Citrus Sinensis ID: 023744

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MAFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMSPGSPSGSDVSDSSVPGLSSNYNIYKPVARSGGINVDVNVVPEPETTSSSNDPPTSLSLSLPGVDSSSEVSNKEMIKQEVRTYMAALEQQRGGACYHGSGGGGDGVLRNVAMQRTG
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHccccccHHHHHHHccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHcccccHHHHccccccccccccHHHccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccHHHHEEEEccc
Coil and Loop (DISEMBL)
mafnrrevdrikgpwspeeDEALQQLVQkhgprnwslisksipgrsgkscrlrwcnqlspqvehraftpeeDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSsmltengiflncngydadfgnsiqqqplklkrsvsagssvpvttglymspgspsgsdvsdssvpglssnyniykpvarsgginvdvnvvpepettsssndpptslslslpgvdsssevsnKEMIKQEVRTYMAALEQQrggacyhgsggggdgVLRNVAMQRTG
Flexible Loop (DISEMBL)
mafnrrevdrikgpwspeeDEALQQLVQkhgprnwslisksipgrsgksCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMSPGSPSGSDVSDSSVPGLSSNYNIYKPVARSGGINVDVNVVPEPettsssndpptslslslpgvdsssevsNKEMIKQEVRTYMAALEQQRGGAcyhgsggggdgVLRNVAMQRTG
Low Complexity Region (SEG)
MAFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMspgspsgsdvsdssvpglssNYNIYKPVARSGGINVDVNVVPEPETTSSSNDPPTSLSLSLPGVDSSSEVSNKEMIKQEVRTYMAALEQQRggacyhgsggggdgVLRNVAMQRTG
Disordered region (IsUnstruct)
************************************LI*********KSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNGYDADFGNSI**********************************************YNIYKPVARSGGINVDVN*******************************************YMA*******GACYH*******************
Disordered Region (DISOPRED)
*************PWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLK**********************************************************************************SGGINV*********************************************************************VLRNVAMQRTG
Disordered Region (DISEMBL)
********DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMS**************PGLSSNYNIYKPVARSGGINVDVNVVP*****************************NKEMIKQEVRTYMAALEQQRGGACYHGSGGGGDGVLRNVAMQRTG
Disordered Region (DISPRO)
MAF**REVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCN**********************************************************IYKPVARSGGINVDVNVVPEPE******DPPTSLSLSLPGVDSSSEVSN****K***RTYMAA***QRGGACYHGSGGGGDGVLRNVAMQRTG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMSPGSPSGSDVSDSSVPGLSSNYNIYKPVARSGGINVDVNVVPEPETTSSSNDPPTSLSLSLPGVDSSSEVSNKEMIKQEVRTYMAALEQQRGGACYHGSGGGGDGVLRNVAMQRTG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	278	2.2.26 [Sep-21-2011]
Q9FDW1	305	Transcription factor MYB4	no	no	0.730	0.665	0.678	1e-70
P06876	636	Transcriptional activator	no	no	0.611	0.267	0.407	3e-34
P10242	640	Transcriptional activator	no	no	0.665	0.289	0.408	4e-34
P51960	751	Myb-related protein A OS=	no	no	0.370	0.137	0.601	8e-34
P10243	752	Myb-related protein A OS=	no	no	0.370	0.136	0.601	8e-34
P46200	640	Transcriptional activator	no	no	0.370	0.160	0.601	9e-34
P01103	641	Transcriptional activator	yes	no	0.370	0.160	0.601	1e-33
P52551	743	Myb-related protein B OS=	N/A	no	0.543	0.203	0.435	1e-33
P52550	757	Myb-related protein A OS=	no	no	0.366	0.134	0.598	4e-33
Q08759	624	Transcriptional activator	N/A	no	0.366	0.163	0.598	5e-33

>sp|Q9FDW1|MYB44_ARATH Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1

 Score =  266 bits (680), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 152/224 (67%), Positives = 172/224 (76%), Gaps = 21/224 (9%)

Query: 9   DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFT 68
           DRIKGPWSPEEDE L++LV K+GPRNW++ISKSIPGRSGKSCRLRWCNQLSPQVEHR F+
Sbjct: 3   DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFS 62

Query: 69  PEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNG 128
            EEDE I RAHA+FGNKWATIARLLNGRTDNA+KNHWNSTLKRKC           +  G
Sbjct: 63  AEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCGG--------YDHRG 114

Query: 129 YDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMSPGSPSGSDVSDSSVPGLSSNYNIYK 188
           YD     S   +P  +KRSVSAGS  PV TGLYMSPGSP+GSDVSDSS   +  +  ++K
Sbjct: 115 YDG----SEDHRP--VKRSVSAGSP-PVVTGLYMSPGSPTGSDVSDSSTIPILPSVELFK 167

Query: 189 PVARSGGINVDVNVVPEP-ETTSSSNDPPTSLSLSLPGVDSSSE 231
           PV R G +     V+P P ET+SSS+DPPTSLSLSLPG D S E
Sbjct: 168 PVPRPGAV-----VLPLPIETSSSSDDPPTSLSLSLPGADVSEE 206

Transcription factor. Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA.
Arabidopsis thaliana (taxid: 3702)

>sp|P06876|MYB_MOUSE Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2

 Score =  145 bits (366), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 86/211 (40%), Positives = 116/211 (54%), Gaps = 41/211 (19%)

Query: 11  IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPE 70
           IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T E
Sbjct: 91  IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 150

Query: 71  EDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNGYD 130
           ED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK               GY 
Sbjct: 151 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ-----------EGY- 198

Query: 131 ADFGNSIQQQPLKLKRSVSAGSSVPVTTGL----------YMSPG---SPSGSDVSDSSV 177
                   Q+P       S  S  PV T            + SP    SPSG    +S  
Sbjct: 199 -------LQEP-------SKASQTPVATSFQKNNHLMGFGHASPPSQLSPSGQSSVNSEY 244

Query: 178 P--GLSSNYNIYKPVARSGGINVDVNVVPEP 206
           P   ++   NI   V     ++V++  VP+P
Sbjct: 245 PYYHIAEAQNISSHVPYPVALHVNIVNVPQP 275

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Mus musculus (taxid: 10090)

>sp|P10242|MYB_HUMAN Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2

 Score =  145 bits (365), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 80/196 (40%), Positives = 114/196 (58%), Gaps = 11/196 (5%)

Query: 11  IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPE 70
           IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T E
Sbjct: 91  IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 150

Query: 71  EDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNGYD 130
           ED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK      E  +  +     
Sbjct: 151 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ---EGYLQESSKASQ 207

Query: 131 ADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMSPGSPSGSDVSDSSVPGLSSNYNIYKPV 190
                S Q      K S   G +    T    + G P+ ++  D S   +S   N+   V
Sbjct: 208 PAVATSFQ------KNSHLMGFAQAPPTAQLPATGQPTVNN--DYSYYHISEAQNVSSHV 259

Query: 191 ARSGGINVDVNVVPEP 206
                ++V++  VP+P
Sbjct: 260 PYPVALHVNIVNVPQP 275

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Homo sapiens (taxid: 9606)

>sp|P51960|MYBA_MOUSE Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2

 Score =  144 bits (362), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 81/103 (78%)

Query: 11  IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPE 70
           IKGPW+ EED+ + +LVQK+GP+ WSLI+K + GR GK CR RW N L+P+V+  ++T E
Sbjct: 86  IKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEE 145

Query: 71  EDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKC 113
           ED +I  AH R GN+WA IA+LL GRTDN+IKNHWNST++RK 
Sbjct: 146 EDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKV 188

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Mus musculus (taxid: 10090)

>sp|P10243|MYBA_HUMAN Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2

 Score =  144 bits (362), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 81/103 (78%)

Query: 11  IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPE 70
           IKGPW+ EED+ + +LVQK+GP+ WSLI+K + GR GK CR RW N L+P+V+  ++T E
Sbjct: 86  IKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEE 145

Query: 71  EDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKC 113
           ED +I  AH R GN+WA IA+LL GRTDN+IKNHWNST++RK 
Sbjct: 146 EDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKV 188

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Homo sapiens (taxid: 9606)

>sp|P46200|MYB_BOVIN Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1

 Score =  144 bits (362), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 82/103 (79%)

Query: 11  IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPE 70
           IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T E
Sbjct: 91  IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 150

Query: 71  EDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKC 113
           ED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK 
Sbjct: 151 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 193

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Bos taurus (taxid: 9913)

>sp|P01103|MYB_CHICK Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=2 SV=1

 Score =  143 bits (361), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 82/103 (79%)

Query: 11  IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPE 70
           IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T E
Sbjct: 91  IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 150

Query: 71  EDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKC 113
           ED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK 
Sbjct: 151 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 193

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Gallus gallus (taxid: 9031)

>sp|P52551|MYBB_XENLA Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2

 Score =  143 bits (360), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/163 (43%), Positives = 101/163 (61%), Gaps = 12/163 (7%)

Query: 9   DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFT 68
           D +KGPW+ EEDE + +LV+K+G ++W+LI+K + GR GK CR RW N L+P+V+  ++T
Sbjct: 80  DLVKGPWTKEEDEKVIELVKKYGTKHWTLIAKQLRGRMGKQCRERWHNHLNPEVKKSSWT 139

Query: 69  PEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNG 128
            EED +I +AH   GN+WA IA+LL GRTDNA+KNHWNST+KRK      E G FL    
Sbjct: 140 EEEDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV-----ETGGFLTVKA 194

Query: 129 -------YDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMSP 164
                   D+ +  +  Q  + L   V   +++P      +SP
Sbjct: 195 SGQQEEREDSGYQAAEDQNHVLLSEPVERSANIPEEPSNILSP 237

Xenopus laevis (taxid: 8355)

>sp|P52550|MYBA_CHICK Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1

 Score =  142 bits (357), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 80/102 (78%)

Query: 11  IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPE 70
           IKGPW+ EED+ + +LVQK+GP+ WSLI+K + GR GK CR RW N L+P+V+  ++T  
Sbjct: 86  IKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEA 145

Query: 71  EDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112
           ED +I  AH R GN+WA IA+LL GRTDN+IKNHWNST++RK
Sbjct: 146 EDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Gallus gallus (taxid: 9031)

>sp|Q08759|MYB_XENLA Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1

 Score =  141 bits (356), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 79/102 (77%)

Query: 11  IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPE 70
           IKGPW+ EED+ + +LV K+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T E
Sbjct: 88  IKGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEE 147

Query: 71  EDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112
           ED  I  AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 148 EDRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 189

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
146217453	317	putative R2R3-Myb transcription factor [	1.0	0.876	0.870	1e-155
146217449	317	putative R2R3-Myb transcription factor [	1.0	0.876	0.876	1e-143
146217447	317	putative R2R3-Myb transcription factor [	1.0	0.876	0.873	1e-143
146217451	317	putative R2R3-Myb transcription factor [	1.0	0.876	0.870	1e-139
224096696	330	predicted protein [Populus trichocarpa]	0.935	0.787	0.631	2e-98
224081769	351	predicted protein [Populus trichocarpa]	0.866	0.686	0.698	9e-93
147835781	301	hypothetical protein VITISV_014739 [Viti	0.888	0.820	0.584	1e-87
225438837	312	PREDICTED: transcription factor MYB44 [V	0.762	0.679	0.736	2e-87
71041082	312	MYB6 [Malus x domestica] gi|302398951|gb	0.942	0.839	0.609	2e-87
63054325	312	sucrose responsive element binding prote	0.762	0.679	0.731	5e-87

>gi|146217453|gb|ABQ10819.1| putative R2R3-Myb transcription factor [Citrus sinensis]

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 276/317 (87%), Positives = 277/317 (87%), Gaps = 39/317 (12%)

Query: 1   MAFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60
           MAFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP
Sbjct: 1   MAFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60

Query: 61  QVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTEN 120
           QVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTEN
Sbjct: 61  QVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTEN 120

Query: 121 GIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMSPGSPSGSDVSDSSVPGL 180
           GIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMSPGSPSGSDVSDSSVPGL
Sbjct: 121 GIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMSPGSPSGSDVSDSSVPGL 180

Query: 181 SSNYNIYKPVARSGGINVDVNVVPEPETTSSSNDPPTSLSLSLPGVDSSSEVSNK----- 235
           SSNYNIYKPVARSGGINVDVNVVPEPETTSSSNDPPTSLS SLPGVDSSSEVSNK     
Sbjct: 181 SSNYNIYKPVARSGGINVDVNVVPEPETTSSSNDPPTSLSPSLPGVDSSSEVSNKVSEST 240

Query: 236 ----------------------------------EMIKQEVRTYMAALEQQRGGACYHGS 261
                                             EMIKQEVRTYMAALEQQRGGACY+GS
Sbjct: 241 QAVNAKASVPAPVSSDSGSKGLVGFSKEFMAVMQEMIKQEVRTYMAALEQQRGGACYNGS 300

Query: 262 GGGGDGVLRNVAMQRTG 278
           GGGGDGVLRNVAMQRTG
Sbjct: 301 GGGGDGVLRNVAMQRTG 317

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146217449|gb|ABQ10817.1| putative R2R3-Myb transcription factor [Citrus sinensis]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 278/317 (87%), Positives = 278/317 (87%), Gaps = 39/317 (12%)

Query: 1   MAFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60
           MAFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP
Sbjct: 1   MAFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60

Query: 61  QVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTEN 120
           QVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTEN
Sbjct: 61  QVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTEN 120

Query: 121 GIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMSPGSPSGSDVSDSSVPGL 180
           GIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMSPGSPSGSDVSDSSVPGL
Sbjct: 121 GIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMSPGSPSGSDVSDSSVPGL 180

Query: 181 SSNYNIYKPVARSGGINVDVNVVPEPETTSSSNDPPTSLSLSLPGVDSSSEVSNK----- 235
           SSNYNIYKPVARSGGINVDVNVVPEPETTSSSNDPPTSLSLSLPGVDSSSEVSNK     
Sbjct: 181 SSNYNIYKPVARSGGINVDVNVVPEPETTSSSNDPPTSLSLSLPGVDSSSEVSNKVSEST 240

Query: 236 ----------------------------------EMIKQEVRTYMAALEQQRGGACYHGS 261
                                             EMIKQEVRTYMAALEQQRGGACYHGS
Sbjct: 241 QAVNAKASVPAPVSSDSGSKGLVGFSKEFMVVMQEMIKQEVRTYMAALEQQRGGACYHGS 300

Query: 262 GGGGDGVLRNVAMQRTG 278
           GGGGDGVLRNVAMQRTG
Sbjct: 301 GGGGDGVLRNVAMQRTG 317

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146217447|gb|ABQ10816.1| putative R2R3-Myb transcription factor [Citrus sinensis]

 Score =  511 bits (1317), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 277/317 (87%), Positives = 278/317 (87%), Gaps = 39/317 (12%)

Query: 1   MAFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60
           MAFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP
Sbjct: 1   MAFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60

Query: 61  QVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTEN 120
           QVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTEN
Sbjct: 61  QVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTEN 120

Query: 121 GIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMSPGSPSGSDVSDSSVPGL 180
           GIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMSPGSPSGSDVSDSSVPGL
Sbjct: 121 GIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMSPGSPSGSDVSDSSVPGL 180

Query: 181 SSNYNIYKPVARSGGINVDVNVVPEPETTSSSNDPPTSLSLSLPGVDSSSEVSNK----- 235
           SSNYNIYKPVARSGGINVDVNVVPEPETTSSSNDPPTSLSLSLPGVDSSSEVSNK     
Sbjct: 181 SSNYNIYKPVARSGGINVDVNVVPEPETTSSSNDPPTSLSLSLPGVDSSSEVSNKVSEST 240

Query: 236 ----------------------------------EMIKQEVRTYMAALEQQRGGACYHGS 261
                                             EMIKQEVRTYMAALEQQRGGACY+GS
Sbjct: 241 QAVNAKASVPAPVSSDSGSKGLVGFSKEFMAVMQEMIKQEVRTYMAALEQQRGGACYNGS 300

Query: 262 GGGGDGVLRNVAMQRTG 278
           GGGGDGVLRNVAMQRTG
Sbjct: 301 GGGGDGVLRNVAMQRTG 317

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146217451|gb|ABQ10818.1| putative R2R3-Myb transcription factor [Citrus sinensis]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 276/317 (87%), Positives = 277/317 (87%), Gaps = 39/317 (12%)

Query: 1   MAFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60
           MAFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP
Sbjct: 1   MAFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60

Query: 61  QVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTEN 120
           QVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTEN
Sbjct: 61  QVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTEN 120

Query: 121 GIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMSPGSPSGSDVSDSSVPGL 180
           GIFLNCNGYDADFG+SIQQQPLKLKRSVSAGSSVPVTTGLYMSPGSPSGSD SDSSVPGL
Sbjct: 121 GIFLNCNGYDADFGDSIQQQPLKLKRSVSAGSSVPVTTGLYMSPGSPSGSDDSDSSVPGL 180

Query: 181 SSNYNIYKPVARSGGINVDVNVVPEPETTSSSNDPPTSLSLSLPGVDSSSEVSNK----- 235
           SSNYNIYKPVARSGGINVDVNVVPEPETTSSSNDPPTSLSLSLPGVDSSSEVSNK     
Sbjct: 181 SSNYNIYKPVARSGGINVDVNVVPEPETTSSSNDPPTSLSLSLPGVDSSSEVSNKVSEST 240

Query: 236 ----------------------------------EMIKQEVRTYMAALEQQRGGACYHGS 261
                                             EMIKQEVRTYMAALEQQRGGACYHGS
Sbjct: 241 HAVNAKASVPAPASSDSGSKGLVGFSKEFMVVMQEMIKQEVRTYMAALEQQRGGACYHGS 300

Query: 262 GGGGDGVLRNVAMQRTG 278
           GGGGDGVLRNVAMQRTG
Sbjct: 301 GGGGDGVLRNVAMQRTG 317

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096696|ref|XP_002310702.1| predicted protein [Populus trichocarpa] gi|222853605|gb|EEE91152.1| predicted protein [Populus trichocarpa]

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 207/328 (63%), Positives = 224/328 (68%), Gaps = 68/328 (20%)

Query: 1   MAFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60
           MA  R+E+DRIKGPWSPEEDEALQ+LVQKHG RNWSLISKSIPGRSGKSCRLRWCNQLSP
Sbjct: 1   MAITRKEMDRIKGPWSPEEDEALQKLVQKHGARNWSLISKSIPGRSGKSCRLRWCNQLSP 60

Query: 61  QVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTEN 120
           QVEHR FTP+ED+ IIRAHARFGNKWATIARLL GRTDNAIKNHWNSTLKRKCSSM  E+
Sbjct: 61  QVEHRPFTPDEDDTIIRAHARFGNKWATIARLLYGRTDNAIKNHWNSTLKRKCSSM-AED 119

Query: 121 GIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMSPGSPSGSDVSDSSVPGL 180
           G F N  GYD +  +    QP  LKRSVSAGS VPV+TGLYMSPGSPSGSDVSDSS+PGL
Sbjct: 120 GNFCNREGYDGNL-DGDNTQP--LKRSVSAGSGVPVSTGLYMSPGSPSGSDVSDSSLPGL 176

Query: 181 SS--NYNIYKPVARSGGINVDVNVVPEPETTSSS---NDPPTSLSLSLPGVDSSSEVSN- 234
           SS  NYNIY+PVAR+G       V+P  ETTSSS   NDPPTSLSLSLPG D SSEVSN 
Sbjct: 177 SSSYNYNIYRPVARTGA------VMPPVETTSSSDNNNDPPTSLSLSLPGAD-SSEVSNQ 229

Query: 235 ------------------------------------------------KEMIKQEVRTYM 246
                                                           +EMI++EVR YM
Sbjct: 230 VGEPSQLPKSNTVTPLLTGRNAPAQEVSPAVGGLSGSVGFNTEFMSVMQEMIRKEVRNYM 289

Query: 247 AALEQQRGGACYHGSGGGGDGVLRNVAM 274
                  GG CY G  G G    RNVA+
Sbjct: 290 MEHSGVGGGMCYQGMSGEG---FRNVAV 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081769|ref|XP_002306488.1| predicted protein [Populus trichocarpa] gi|222855937|gb|EEE93484.1| predicted protein [Populus trichocarpa]

 Score =  345 bits (886), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 181/259 (69%), Positives = 208/259 (80%), Gaps = 18/259 (6%)

Query: 1   MAFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60
           MA  R+E+DRIKGPWSPEEDEAL++LVQ+HGPRNWSLISKSIPGRSGKSCRLRWCNQLSP
Sbjct: 1   MATTRKEMDRIKGPWSPEEDEALKKLVQRHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60

Query: 61  QVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTEN 120
           QVEHRAFTPEED+ IIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSM  ++
Sbjct: 61  QVEHRAFTPEEDDRIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSM-ADD 119

Query: 121 GIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMSPGSPSGSDVSDSSVPGL 180
           G   N  GYD +  +    QP   KRSVSAGS VP++TGLYMSPGSPSGSDVSDSS PGL
Sbjct: 120 GNLSNLEGYDGNL-DVDDTQP--SKRSVSAGSGVPLSTGLYMSPGSPSGSDVSDSSPPGL 176

Query: 181 SS--NYNIYKPVARSGGINVDVNVVPEPETTSSS----NDPPTSLSLSLPGVDSSSEVSN 234
           SS  N+NIY+PVAR+GG      V+P  ET SSS    +DPPT LSLSLPG D ++++ N
Sbjct: 177 SSAHNHNIYRPVARTGG------VLPPVETASSSDNNDDDPPTLLSLSLPGADPATKLPN 230

Query: 235 KEMIKQEVRTYMAALEQQR 253
           +  + +  +  +A   Q+R
Sbjct: 231 R--VVEPTQERVAGSTQER 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147835781|emb|CAN75196.1| hypothetical protein VITISV_014739 [Vitis vinifera]

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 191/327 (58%), Positives = 219/327 (66%), Gaps = 80/327 (24%)

Query: 1   MAFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60
           MA  R++VDRIKGPWSPEED+ALQ+LVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP
Sbjct: 1   MAATRKDVDRIKGPWSPEEDDALQKLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60

Query: 61  QVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTEN 120
           QVEHRAFT EED+ I+RAHARFGNKWATIARLL+GRTDNAIKNHWNSTLKRKCS+ +TE+
Sbjct: 61  QVEHRAFTSEEDDTIMRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSA-ITED 119

Query: 121 GIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMSPGSPSGSDVSDSSVPGL 180
           G F        D+       P  LKRSVSAG++ PV +GLY+SP SP GSDVSDSS+P +
Sbjct: 120 GSF------GGDY------PPHPLKRSVSAGAAAPV-SGLYLSPSSPCGSDVSDSSLPVV 166

Query: 181 SSNYNIYKPVARSGGINVDVNVVPEPETTSSSNDPPTSLSLSLPGVDSSSEVSNK----- 235
           SS++ +Y+PVAR+GGI      +P PETTSSSNDPPTSLSLSLPGVD S EVSN+     
Sbjct: 167 SSSH-VYRPVARTGGI------IP-PETTSSSNDPPTSLSLSLPGVD-SCEVSNRAPEPN 217

Query: 236 ----------------------------------------EMIK----QEVRTYMAALEQ 251
                                                   E I     Q +R YMA LEQ
Sbjct: 218 HAPPGKPYSDDTYDGSFAADSDAPTQPASDGAGYSPLPGGETIYPLQLQSLRNYMAGLEQ 277

Query: 252 QRGGACYHGSGGGGDGVLRNVAMQRTG 278
              G C    G      +RN A++R G
Sbjct: 278 N--GVCLQADG------IRNAAVKRIG 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438837|ref|XP_002283347.1| PREDICTED: transcription factor MYB44 [Vitis vinifera]

 Score =  328 bits (840), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 173/235 (73%), Positives = 197/235 (83%), Gaps = 23/235 (9%)

Query: 1   MAFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60
           MA  R++VDRIKGPWSPEED+ALQ+LVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP
Sbjct: 1   MAATRKDVDRIKGPWSPEEDDALQKLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60

Query: 61  QVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTEN 120
           QVEHRAFT EED+ I+RAHARFGNKWATIARLL+GRTDNAIKNHWNSTLKRKCS+ +TE+
Sbjct: 61  QVEHRAFTSEEDDTIMRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSA-ITED 119

Query: 121 GIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMSPGSPSGSDVSDSSVPGL 180
           G F        D+       P  LKRSVSAG++ PV +GLY+SP SP GSDVSDSS+P +
Sbjct: 120 GSF------GGDY------PPHPLKRSVSAGAAAPV-SGLYLSPSSPCGSDVSDSSLPVV 166

Query: 181 SSNYNIYKPVARSGGINVDVNVVPEPETTSSSNDPPTSLSLSLPGVDSSSEVSNK 235
           SS++ +Y+PVAR+GGI      +P PETTSSSNDPPTSLSLSLPGVD S EVSN+
Sbjct: 167 SSSH-VYRPVARTGGI------IP-PETTSSSNDPPTSLSLSLPGVD-SCEVSNR 212

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|71041082|gb|AAZ20429.1| MYB6 [Malus x domestica] gi|302398951|gb|ADL36770.1| MYB domain class transcription factor [Malus x domestica]

 Score =  328 bits (840), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 197/323 (60%), Positives = 224/323 (69%), Gaps = 61/323 (18%)

Query: 1   MAFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60
           MA +R+++DRIKGPWSPEED++LQ+LVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP
Sbjct: 1   MAVSRKDMDRIKGPWSPEEDDSLQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60

Query: 61  QVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTEN 120
           QVEHRAFTPEED+MIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCS      
Sbjct: 61  QVEHRAFTPEEDDMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSD---GG 117

Query: 121 GIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMSPGSPSGSDVSDSSVPGL 180
           G+ LN  GYD  F    +Q P  LKRSVSAGS VPV+TGLYMSPGSPSGSD SDSS   +
Sbjct: 118 GVDLN-GGYDGHFLRDHEQPP--LKRSVSAGSGVPVSTGLYMSPGSPSGSDASDSSAQVM 174

Query: 181 S-SNYNIYKPVARSGGINVDVNVVPEPETT---------SSSNDPPTSLSLSLPGVDSSS 230
           S S+ ++Y+P+AR+GG      V+P  ETT         S  NDPPTSLSLSLPGVD S 
Sbjct: 175 SLSDCHVYRPLARTGG------VLPPAETTSSSNNNSSNSEKNDPPTSLSLSLPGVD-SE 227

Query: 231 EVSNKE-----------------------------------MIKQEVRTYMAALEQQRGG 255
           EVSN+                                    MI++EVR YMA LEQ   G
Sbjct: 228 EVSNQVAPVTESTQAPAPAPVSTTSVAVQNIPVELLAVMQGMIRKEVRNYMAGLEQS--G 285

Query: 256 ACYHGSGGGGDGVLRNVAMQRTG 278
            C+  +  G +G   NV ++R G
Sbjct: 286 VCFQQAAAGNEGFW-NVGVKRIG 307

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|63054325|gb|AAY28930.1| sucrose responsive element binding protein [Vitis vinifera]

 Score =  327 bits (837), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 172/235 (73%), Positives = 196/235 (83%), Gaps = 23/235 (9%)

Query: 1   MAFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60
           MA  R++ DRIKGPWSPEED+ALQ+LVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP
Sbjct: 1   MAATRKDADRIKGPWSPEEDDALQKLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60

Query: 61  QVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTEN 120
           QVEHRAFT EED+ I+RAHARFGNKWATIARLL+GRTDNAIKNHWNSTLKRKCS+ +TE+
Sbjct: 61  QVEHRAFTSEEDDTIMRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSA-ITED 119

Query: 121 GIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMSPGSPSGSDVSDSSVPGL 180
           G F        D+       P  LKRSVSAG++ PV +GLY+SP SP GSDVSDSS+P +
Sbjct: 120 GSF------GGDY------PPHPLKRSVSAGAAAPV-SGLYLSPSSPCGSDVSDSSLPVV 166

Query: 181 SSNYNIYKPVARSGGINVDVNVVPEPETTSSSNDPPTSLSLSLPGVDSSSEVSNK 235
           SS++ +Y+PVAR+GGI      +P PETTSSSNDPPTSLSLSLPGVD S EVSN+
Sbjct: 167 SSSH-VYRPVARTGGI------IP-PETTSSSNDPPTSLSLSLPGVD-SCEVSNR 212

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
TAIR|locus:2115060	320	MYB73 "myb domain protein 73"	0.636	0.553	0.634	5.4e-65
TAIR|locus:2083113	301	MYB77 "myb domain protein 77"	0.762	0.704	0.564	3.7e-64
TAIR|locus:2058613	309	MYB70 "myb domain protein 70"	0.827	0.744	0.564	4.2e-63
TAIR|locus:2158212	305	MYBR1 "AT5G67300" [Arabidopsis	0.758	0.691	0.532	1.6e-59
TAIR|locus:2078961	399	MYB109 "myb domain protein 109	0.399	0.278	0.687	4.6e-42
TAIR|locus:2061242	367	MYB25 "myb domain protein 25"	0.370	0.280	0.669	1.9e-39
TAIR|locus:2083489	393	MYB1 "myb domain protein 1" [A	0.535	0.379	0.533	1.5e-37
ZFIN|ZDB-GENE-991110-14	641	cmyb "transcription factor cmy	0.366	0.159	0.598	1.5e-34
TAIR|locus:2083599	510	MYB3R-3 "myb domain protein 3r	0.374	0.203	0.586	2.7e-34
UNIPROTKB|I3LQ62	675	MYB "Uncharacterized protein"	0.366	0.151	0.607	1.2e-33

TAIR|locus:2115060 MYB73 "myb domain protein 73" [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
 Identities = 120/189 (63%), Positives = 139/189 (73%)

Query:     5 RREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEH 64
             R+ ++RIKGPWSPEED+ LQ+LVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP+VEH
Sbjct:     6 RKNMERIKGPWSPEEDDLLQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEH 65

Query:    65 RAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFL 124
             RAF+ EEDE IIRAHARFGNKWATI+RLLNGRTDNAIKNHWNSTLKRKCS +  ++  F 
Sbjct:    66 RAFSQEEDETIIRAHARFGNKWATISRLLNGRTDNAIKNHWNSTLKRKCS-VEGQSCDFG 124

Query:   125 NCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMXXXXXXXXXXXXXXXXXXXXNY 184
                GYD + G   ++QPLK  R+ S G  V  +TGLYM                      
Sbjct:   125 GNGGYDGNLG---EEQPLK--RTASGGGGV--STGLYMSPGSPSGSDVSEQSSGGA---- 173

Query:   185 NIYKPVARS 193
             +++KP  RS
Sbjct:   174 HVFKPTVRS 182

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2083113 MYB77 "myb domain protein 77" [Arabidopsis thaliana (taxid:3702)]

 Score = 618 (222.6 bits), Expect = 3.7e-64, Sum P(2) = 3.7e-64
 Identities = 131/232 (56%), Positives = 157/232 (67%)

Query:     9 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFT 68
             DR+KGPWS EEDE L+++V+K+GPRNWS ISKSIPGRSGKSCRLRWCNQLSP+VEHR F+
Sbjct:     3 DRVKGPWSQEEDEQLRRMVEKYGPRNWSAISKSIPGRSGKSCRLRWCNQLSPEVEHRPFS 62

Query:    69 PEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNG 128
             PEEDE I+ A A+FGNKWATIARLLNGRTDNA+KNHWNSTLKRKCS  +    +      
Sbjct:    63 PEEDETIVTARAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCSGGVAVTTV----TE 118

Query:   129 YDADFGNSIQQQPLKLKRSVSAGSS-VPVTTGLYMXXXXXXXXXXXXXXXXXXXXN--YN 185
              + D     Q +P K +RSVS  S+  PV TGLYM                    +    
Sbjct:   119 TEED-----QDRPKK-RRSVSFDSAFAPVDTGLYMSPESPNGIDVSDSSTIPSPSSPVAQ 172

Query:   186 IYKPVARSGGINVDVNVVPEP---ETTSSSNDPPTSLSLSLPGVDSSSEVSN 234
             ++KP+  SGG  V    VP+P   E +SSS DPPTSLSLSLPG +++S   N
Sbjct:   173 LFKPMPISGGFTV----VPQPLPVEMSSSSEDPPTSLSLSLPGAENTSSSHN 220

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0048527 "lateral root development" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2058613 MYB70 "myb domain protein 70" [Arabidopsis thaliana (taxid:3702)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 135/239 (56%), Positives = 156/239 (65%)

Query:     5 RREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEH 64
             R+E+DRIKGPWSPEED+ LQ LVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP+VEH
Sbjct:     6 RKEMDRIKGPWSPEEDDLLQSLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEH 65

Query:    65 RAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLT--ENGI 122
             R FT EED+ II AHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCS      E G 
Sbjct:    66 RGFTAEEDDTIILAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSGGGGGGEEGQ 125

Query:   123 FLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMXXXXXXXXXXXXXXXXXXXX 182
               +  G     GN   ++PLK  R  S G  V V T L                      
Sbjct:   126 SCDFGGNGGYDGNLTDEKPLK--RRASGGGGVVVVTALSPTGSDVSEQSQSSGSVLPVSS 183

Query:   183 NYNIYKPVARSGGINVDVNVVPEPETTSSSNDPPTSLSLSLPGVDSSSEVSNKEMIKQE 241
             + +++KP AR+GG+ ++ +  PE E      DP T L LSLP V+ S+       +K+E
Sbjct:   184 SCHVFKPTARAGGVVIESSS-PEEE----EKDPMTCLRLSLPWVNESTTPPELFPVKRE 237

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2158212 MYBR1 "AT5G67300" [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
 Identities = 123/231 (53%), Positives = 148/231 (64%)

Query:     9 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFT 68
             DRIKGPWSPEEDE L++LV K+GPRNW++ISKSIPGRSGKSCRLRWCNQLSPQVEHR F+
Sbjct:     3 DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFS 62

Query:    69 PEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNG 128
              EEDE I RAHA+FGNKWATIARLLNGRTDNA+KNHWNSTLKRKC           +  G
Sbjct:    63 AEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCGGY--------DHRG 114

Query:   129 YDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMXXXXXXXXXXXXXXXXXXXXNYNIYK 188
             YD     S   +P+K  RSVSAGS  PV TGLYM                    +  ++K
Sbjct:   115 YDG----SEDHRPVK--RSVSAGSP-PVVTGLYMSPGSPTGSDVSDSSTIPILPSVELFK 167

Query:   189 PVARSGGINVDVNVVP-----EPETTSSSNDPPTSLSLSLPGVDSSSEVSN 234
             PV R G + + + +       +P T+ S + P   +S        S+ ++N
Sbjct:   168 PVPRPGAVVLPLPIETSSSSDDPPTSLSLSLPGADVSEESNRSHESTNINN 218

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009651 "response to salt stress" evidence=IEP;IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;IMP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IEP

GO:2000022 "regulation of jasmonic acid mediated signaling pathway" evidence=IMP

GO:2000031 "regulation of salicylic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2078961 MYB109 "myb domain protein 109" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
 Identities = 77/112 (68%), Positives = 90/112 (80%)

Query:    10 RIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTP 69
             ++KGPWS EED  L +LV+K GPRNWSLI++ IPGRSGKSCRLRWCNQL P ++ + F+ 
Sbjct:    54 KVKGPWSTEEDAVLTKLVRKLGPRNWSLIARGIPGRSGKSCRLRWCNQLDPCLKRKPFSD 113

Query:    70 EEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENG 121
             EED MII AHA  GNKWA IA+LL GRTDNAIKNHWNSTL+RK +  L  NG
Sbjct:   114 EEDRMIISAHAVHGNKWAVIAKLLTGRTDNAIKNHWNSTLRRKYAD-LWNNG 164

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0000303 "response to superoxide" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

TAIR|locus:2061242 MYB25 "myb domain protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
 Identities = 69/103 (66%), Positives = 85/103 (82%)

Query:    10 RIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTP 69
             ++KGPW PE+DEAL +LV+  GPRNW+LIS+ IPGRSGKSCRLRWCNQL P ++ + F+ 
Sbjct:    48 KVKGPWLPEQDEALTRLVKMCGPRNWNLISRGIPGRSGKSCRLRWCNQLDPILKRKPFSD 107

Query:    70 EEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112
             EE+ MI+ A A  GNKW+ IA+LL GRTDNAIKNHWNS L+RK
Sbjct:   108 EEEHMIMSAQAVLGNKWSVIAKLLPGRTDNAIKNHWNSNLRRK 150

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

GO:0010090 "trichome morphogenesis" evidence=RCA

TAIR|locus:2083489 MYB1 "myb domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 80/150 (53%), Positives = 98/150 (65%)

Query:     9 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFT 68
             DR+KGPWS EED+ L +LV++ G RNWS I++SIPGRSGKSCRLRWCNQL+P +   +FT
Sbjct:    52 DRVKGPWSKEEDDVLSELVKRLGARNWSFIARSIPGRSGKSCRLRWCNQLNPNLIRNSFT 111

Query:    69 PEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNG 128
               ED+ II AHA  GNKWA IA+LL GRTDNAIKNHWNS L+R+         I      
Sbjct:   112 EVEDQAIIAAHAIHGNKWAVIAKLLPGRTDNAIKNHWNSALRRRFIDFEKAKNIGTGSLV 171

Query:   129 YDADFGNSIQQQPLKLKRSVSAGSSVPVTT 158
              D D G          + ++S+G    VTT
Sbjct:   172 VD-DSGFDRTTTVASSEETLSSGGGCHVTT 200

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

ZFIN|ZDB-GENE-991110-14 cmyb "transcription factor cmyb" [Danio rerio (taxid:7955)]

 Score = 359 (131.4 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
 Identities = 61/102 (59%), Positives = 83/102 (81%)

Query:    11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPE 70
             IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T E
Sbjct:    91 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 150

Query:    71 EDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112
             ED++I +AH + GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct:   151 EDQIIYQAHEKLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009790 "embryo development" evidence=IGI;IMP

GO:0001654 "eye development" evidence=IMP

GO:0060216 "definitive hemopoiesis" evidence=IMP

GO:0035701 "hematopoietic stem cell migration" evidence=IGI

TAIR|locus:2083599 MYB3R-3 "myb domain protein 3r-3" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
 Identities = 61/104 (58%), Positives = 80/104 (76%)

Query:     9 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFT 68
             D IKGPW+ EEDE + +LV+K+GP  WS+I++S+PGR GK CR RW N L+P +   A+T
Sbjct:   132 DLIKGPWTHEEDEKIVELVEKYGPAKWSIIAQSLPGRIGKQCRERWHNHLNPDINKDAWT 191

Query:    69 PEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112
              EE+  ++ AH   GNKWA IA++L GRTDNAIKNHWNS+LK+K
Sbjct:   192 TEEEVALMNAHRSHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKK 235

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

UNIPROTKB|I3LQ62 MYB "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 360 (131.8 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
 Identities = 62/102 (60%), Positives = 82/102 (80%)

Query:    11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPE 70
             IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T E
Sbjct:   126 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 185

Query:    71 EDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112
             ED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct:   186 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 227

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VII.2797.1 hypothetical protein (290 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	278
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	7e-28
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	3e-25
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	1e-20
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	4e-20
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	1e-17
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	5e-17
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	9e-17
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	4e-15
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	8e-13
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-12
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	3e-10
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	4e-07
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	2e-04
cd11659	53	cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding d	5e-04

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  111 bits (278), Expect = 7e-28
 Identities = 77/210 (36%), Positives = 102/210 (48%), Gaps = 12/210 (5%)

Query: 12  KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPE 70
           KG WSPEEDE L + + K+G   WS + K     R GKSCRLRW N L P ++   F+ +
Sbjct: 14  KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQ 73

Query: 71  EDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNGYD 130
           E+ +II  HA  GN+W+ IA  L GRTDN IKN WNS LK+K    L + GI  N +   
Sbjct: 74  EENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKK----LRQRGIDPNTHKPL 129

Query: 131 ADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMSPGS-PSGSDVSDSSVPGLSSNYNIYKP 189
           ++  N   + P    +S  A S V     L  +  S P  +     S     + Y +   
Sbjct: 130 SEVENGEDKNPPTDDKSDKASSVVSNELNLLKADNSKPLAALQEKRSSSISPAGYQLEVE 189

Query: 190 VARSGGINVDVNVVPEPETTSSSN-DPPTS 218
            + S  IN   N        S+SN   PT 
Sbjct: 190 SSSSSKINNSNN-----NNHSNSNLMTPTP 214

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  100 bits (249), Expect = 3e-25
 Identities = 48/102 (47%), Positives = 67/102 (65%), Gaps = 1/102 (0%)

Query: 12  KGPWSPEEDEALQQLVQKHGPRNW-SLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPE 70
           +GPW+ EEDE L   ++K G   W SL  ++   R GKSCRLRW N L P V+    T +
Sbjct: 25  RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSD 84

Query: 71  EDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112
           E+++I+R H   GN+W+ IA  + GRTDN IKN+WN+ L++K
Sbjct: 85  EEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKK 126

Length = 249

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 90.6 bits (225), Expect = 1e-20
 Identities = 37/104 (35%), Positives = 56/104 (53%)

Query: 8   VDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAF 67
             R  G W   EDE L+ LV+K GP NWS ++  +   +GK    RW N L+PQ++ + +
Sbjct: 16  TKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNW 75

Query: 68  TPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 111
           + EEDE +I      G +W+TIA   + RT       + +TL+ 
Sbjct: 76  SEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLED 119

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 81.0 bits (201), Expect = 4e-20
 Identities = 26/47 (55%), Positives = 34/47 (72%)

Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQL 58
          +GPW+PEEDE L + V+KHG  NWS I+K +PGR+   C+ RW N L
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 74.6 bits (184), Expect = 1e-17
 Identities = 26/49 (53%), Positives = 34/49 (69%)

Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60
          KG W+ EEDE L +LV+K+G  NW  I+K +PGR+ + CR RW N L P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 72.7 bits (179), Expect = 5e-17
 Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 2/61 (3%)

Query: 15 WSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEM 74
          W+ EEDE L +LV+K+G  +W  I++ + GR+  +CR RW  +L P+     +T EED+ 
Sbjct: 1  WTEEEDEKLLKLVEKYG-NDWKQIAEEL-GRTPSACRDRWRRKLRPKRSRGPWTKEEDQR 58

Query: 75 I 75
          +
Sbjct: 59 L 59

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 71.8 bits (177), Expect = 9e-17
 Identities = 23/43 (53%), Positives = 30/43 (69%)

Query: 14 PWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCN 56
          PW+ EEDE L + V+K+G  NW  I+K +PGR+ K CR RW N
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRN 43

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 67.5 bits (166), Expect = 4e-15
 Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 66  AFTPEEDEMIIRAHARFGNK-WATIARLLNGRTDNAIKNHWNSTL 109
            +TPEEDE++I A  + GN  W+ IA+ L GRTDN  KN WN+ L
Sbjct: 3   PWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 61.5 bits (150), Expect = 8e-13
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 65  RAFTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLKR 111
             +T EEDE++I    ++G N W  IA+ L GRT    +  W + LK 
Sbjct: 2   GEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 60.3 bits (147), Expect = 2e-12
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 66  AFTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTL 109
            +T EEDE+++ A  ++G N W  IA+ L GRT    +  W + L
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 54.3 bits (131), Expect = 3e-10
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 67  FTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCS 114
           +T EEDE +++   ++GN W  IA  L GRT +A ++ W   L+ K S
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKRS 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 45.6 bits (109), Expect = 4e-07
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 14 PWSPEEDEALQQLVQKHGPRNWSLI---SKSIPGRSGKSCRLRWCN 56
           W+ EEDEAL + V+K+G  NW+ I      +  R+    + +W N
Sbjct: 2  KWTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVDLKDKWRN 47

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 24/112 (21%), Positives = 34/112 (30%), Gaps = 2/112 (1%)

Query: 4   NRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVE 63
           N       K  WS EEDE L  L ++ G + WS I+     R+ + C  R+ N L     
Sbjct: 64  NHLNPQLKKKNWSEEEDEQLIDLDKELGTQ-WSTIADYKDRRTAQQCVERYVNTLEDLSS 122

Query: 64  HRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 115
                 +      +    F    A    +          N   S   R    
Sbjct: 123 THDSKLQRRNEFDKIDP-FNENSARRPDIYEDELLEREVNREASYRLRVPRV 173

Length = 512

>gnl|CDD|212557 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSC 50
          K  W+ EEDE L  L  K  P  W  I+  I GR+ + C
Sbjct: 5  KTEWTREEDEKLLHLA-KLLPTQWRTIAP-IVGRTAQQC 41

In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	278
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	99.97
PLN03091	459	hypothetical protein; Provisional	99.97
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.73
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.73
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.66
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.6
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.49
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.43
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.38
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.37
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.22
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.18
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.14
PLN03212	249	Transcription repressor MYB5; Provisional	99.13
PLN03091	459	hypothetical protein; Provisional	99.08
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.05
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.02
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.0
KOG0048	238	consensus Transcription factor, Myb superfamily [T	98.92
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.16
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.91
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.63
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.57
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.55
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.5
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.42
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.35
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.95
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.95
PRK13923	170	putative spore coat protein regulator protein YlbO	96.74
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.73
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.66
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.64
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.51
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.5
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.29
KOG2656	445	consensus DNA methyltransferase 1-associated prote	96.05
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.89
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.78
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.73
PRK13923	170	putative spore coat protein regulator protein YlbO	95.43
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	95.27
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.12
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	94.64
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	90.99
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	90.63
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	89.81
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	89.71
KOG1194	534	consensus Predicted DNA-binding protein, contains	89.23
PF11626	87	Rap1_C: TRF2-interacting telomeric protein/Rap1 -	89.2
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	88.47
KOG4282	345	consensus Transcription factor GT-2 and related pr	87.48
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	82.97
KOG4282	345	consensus Transcription factor GT-2 and related pr	82.07
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	80.14

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=9.3e-35  Score=263.38  Aligned_cols=111  Identities=44%  Similarity=0.801  Sum_probs=106.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC-CCCcccccccccccCCCccccCCCChHHHHHHHHHHHHcCCC
Q 023744            7 EVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNK   85 (278)
Q Consensus         7 ~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp-~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~~G~k   85 (278)
                      ++..+||+||+|||++|+++|++||+++|..|++.++ +|++++||+||.|||+|+++++.||+|||++|+++|+.|||+
T Consensus         4 k~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr   83 (238)
T KOG0048|consen    4 NPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNR   83 (238)
T ss_pred             CccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcH
Confidence            3446789999999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCHHHHHHHHHHHhhhhhhccc
Q 023744           86 WATIARLLNGRTDNAIKNHWNSTLKRKCSSML  117 (278)
Q Consensus        86 W~~IA~~lpgRT~~~~knRw~~~lk~k~~~~~  117 (278)
                      |+.||++|||||++.|||+|+..+|+|+....
T Consensus        84 Ws~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   84 WSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999998775

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.97  E-value=2.9e-32  Score=245.75  Aligned_cols=112  Identities=42%  Similarity=0.793  Sum_probs=106.7

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhC-CCCCcccccccccccCCCccccCCCChHHHHHHHHHHHHcCC
Q 023744            6 REVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSI-PGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGN   84 (278)
Q Consensus         6 ~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~l-p~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~~G~   84 (278)
                      .++.++|++||+|||++|+++|++||..+|..||+.+ ++|+++|||+||.|+|+|.+++++||+|||++|++++..||+
T Consensus        19 ~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~Gn   98 (249)
T PLN03212         19 TKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGN   98 (249)
T ss_pred             ccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhccc
Confidence            3577899999999999999999999999999999988 699999999999999999999999999999999999999999


Q ss_pred             CccccccccCCCCHHHHHHHHHHHhhhhhhccc
Q 023744           85 KWATIARLLNGRTDNAIKNHWNSTLKRKCSSML  117 (278)
Q Consensus        85 kW~~IA~~lpgRT~~~~knRw~~~lk~k~~~~~  117 (278)
                      +|+.||++|||||+++|||||+.++++++....
T Consensus        99 KWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~  131 (249)
T PLN03212         99 RWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQG  131 (249)
T ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcC
Confidence            999999999999999999999999999877643

>PLN03091 hypothetical protein; Provisional

Probab=99.97  E-value=5.4e-31  Score=252.94  Aligned_cols=111  Identities=48%  Similarity=0.806  Sum_probs=105.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhC-CCCCcccccccccccCCCccccCCCChHHHHHHHHHHHHcCCC
Q 023744            7 EVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSI-PGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNK   85 (278)
Q Consensus         7 ~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~l-p~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~~G~k   85 (278)
                      +.+++||+||+|||++|+++|++||..+|..||+.+ ++|+++|||+||.++|+|.+++++||+|||++|++++++||++
T Consensus         9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnK   88 (459)
T PLN03091          9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR   88 (459)
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcc
Confidence            467899999999999999999999999999999988 5999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCHHHHHHHHHHHhhhhhhccc
Q 023744           86 WATIARLLNGRTDNAIKNHWNSTLKRKCSSML  117 (278)
Q Consensus        86 W~~IA~~lpgRT~~~~knRw~~~lk~k~~~~~  117 (278)
                      |.+||++|+|||+++|||||+.++++++....
T Consensus        89 WskIAk~LPGRTDnqIKNRWnslLKKklr~~~  120 (459)
T PLN03091         89 WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG  120 (459)
T ss_pred             hHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999877543

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.73  E-value=1.5e-18  Score=172.56  Aligned_cols=104  Identities=27%  Similarity=0.486  Sum_probs=97.4

Q ss_pred             cccccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHH
Q 023744            2 AFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHAR   81 (278)
Q Consensus         2 ~~~~~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~   81 (278)
                      |++..+|.+++|+||++||.+|..+|.+||.++|.+|-..+|||+..|||+||.|.|+...+++.||-.||+.|+.+|.+
T Consensus       350 ~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~  429 (939)
T KOG0049|consen  350 FSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKV  429 (939)
T ss_pred             heeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC-CCccccccccCCCCHHH---HHHHH
Q 023744           82 FG-NKWATIARLLNGRTDNA---IKNHW  105 (278)
Q Consensus        82 ~G-~kW~~IA~~lpgRT~~~---~knRw  105 (278)
                      || ++|.+||-+||+||..|   |+.|+
T Consensus       430 YG~g~WakcA~~Lp~~t~~q~~rrR~R~  457 (939)
T KOG0049|consen  430 YGKGNWAKCAMLLPKKTSRQLRRRRLRL  457 (939)
T ss_pred             HccchHHHHHHHccccchhHHHHHHHHH
Confidence            99 68999999999999954   45544

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.73  E-value=4.6e-18  Score=169.17  Aligned_cols=115  Identities=27%  Similarity=0.522  Sum_probs=93.5

Q ss_pred             CcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCC----------------------------------------------
Q 023744            1 MAFNRREVDRIKGPWSPEEDEALQQLVQKHGPRN----------------------------------------------   34 (278)
Q Consensus         1 ~~~~~~~~~~~kg~WT~EED~~L~~lV~kyG~~n----------------------------------------------   34 (278)
                      ||.|+..|++.|..|+.|||+.|..+...++..+                                              
T Consensus       242 ~W~n~l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~  321 (939)
T KOG0049|consen  242 KWYNELNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVK  321 (939)
T ss_pred             HHhhhcCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence            5777777777777777777777777766554444                                              


Q ss_pred             ---------hHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHHcCCC-ccccccccCCCCHHHHHHH
Q 023744           35 ---------WSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNK-WATIARLLNGRTDNAIKNH  104 (278)
Q Consensus        35 ---------W~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~~G~k-W~~IA~~lpgRT~~~~knR  104 (278)
                               |.+|-..||||+..|...||.+.|+|.+++|+||.+||.+|+.+|.+||.+ |.+|-..+|||++.||++|
T Consensus       322 ~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~R  401 (939)
T KOG0049|consen  322 ITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRER  401 (939)
T ss_pred             HhhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHH
Confidence                     555555555566666666888888999999999999999999999999965 9999999999999999999


Q ss_pred             HHHHhhhhhhc
Q 023744          105 WNSTLKRKCSS  115 (278)
Q Consensus       105 w~~~lk~k~~~  115 (278)
                      |.+.|.+..+.
T Consensus       402 Y~nvL~~s~K~  412 (939)
T KOG0049|consen  402 YTNVLNRSAKV  412 (939)
T ss_pred             HHHHHHHhhcc
Confidence            99999876554

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.66  E-value=1e-16  Score=115.39  Aligned_cols=60  Identities=42%  Similarity=0.842  Sum_probs=54.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHH
Q 023744           15 WSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMI   75 (278)
Q Consensus        15 WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~L   75 (278)
                      ||+|||++|+.+|++|| .+|..||+.|+.|+..+|+.||.+.|++.+++++||++||++|
T Consensus         1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG-NDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT-S-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-cCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            99999999999999999 5799999999779999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.60  E-value=1.2e-15  Score=150.90  Aligned_cols=109  Identities=35%  Similarity=0.646  Sum_probs=104.2

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHHcCCC
Q 023744            6 REVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNK   85 (278)
Q Consensus         6 ~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~~G~k   85 (278)
                      +..+++.|.|+..||+.|..+|+.||+.+|..||..+.-|++++|+.||.++++|.+++..|+.|||..|+.+..++|..
T Consensus        14 ~~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~   93 (512)
T COG5147          14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ   93 (512)
T ss_pred             ccceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch
Confidence            45578889999999999999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCHHHHHHHHHHHhhhhhh
Q 023744           86 WATIARLLNGRTDNAIKNHWNSTLKRKCS  114 (278)
Q Consensus        86 W~~IA~~lpgRT~~~~knRw~~~lk~k~~  114 (278)
                      |..||..+++|+..+|.++|..++.....
T Consensus        94 wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          94 WSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            99999999999999999999999987766

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=9.9e-15  Score=142.66  Aligned_cols=105  Identities=30%  Similarity=0.551  Sum_probs=99.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHHcCCCcccc
Q 023744           10 RIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATI   89 (278)
Q Consensus        10 ~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~~G~kW~~I   89 (278)
                      ++-|-|+.-||+.|...|.+||...|+.|++.++-.+.+||+.||..+|+|.+++-.|+.|||+.||.+...+-..|..|
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI   84 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI   84 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCHHHHHHHHHHHhhhhhhc
Q 023744           90 ARLLNGRTDNAIKNHWNSTLKRKCSS  115 (278)
Q Consensus        90 A~~lpgRT~~~~knRw~~~lk~k~~~  115 (278)
                      +..| ||+.++|-.||++++-..+..
T Consensus        85 a~i~-gr~~~qc~eRy~~ll~~~~s~  109 (617)
T KOG0050|consen   85 ADIM-GRTSQQCLERYNNLLDVYVSY  109 (617)
T ss_pred             HHHh-hhhHHHHHHHHHHHHHHHHhh
Confidence            9999 999999999999998776554

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.43  E-value=4.2e-14  Score=97.85  Aligned_cols=47  Identities=51%  Similarity=0.987  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC-CCCcccccccccccC
Q 023744           12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQL   58 (278)
Q Consensus        12 kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp-~Rs~kqcr~Rw~n~L   58 (278)
                      |++||+|||++|+++|.+||..+|..||..|+ +|+..||+.||.+++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            68999999999999999999888999999999 999999999998764

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.38  E-value=4.7e-13  Score=134.09  Aligned_cols=104  Identities=27%  Similarity=0.584  Sum_probs=93.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCcc--ccCCCChHHHHHHHHHHH-------H
Q 023744           11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQV--EHRAFTPEEDEMIIRAHA-------R   81 (278)
Q Consensus        11 ~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i--~k~~WT~EED~~Ll~~v~-------~   81 (278)
                      .+|.||+||++.|..+|.++| .+|..|++.| +|.+..|++||.++..++-  +++.||.||++.|+++|.       .
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q  460 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQ  460 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhc
Confidence            899999999999999999999 5699999999 9999999999999999885  899999999999999995       3


Q ss_pred             c-------------------CCCccccccccCCCCHHHHHHHHHHHhhhhhhcc
Q 023744           82 F-------------------GNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSM  116 (278)
Q Consensus        82 ~-------------------G~kW~~IA~~lpgRT~~~~knRw~~~lk~k~~~~  116 (278)
                      +                   +-+|..|++.+..|+..+|+.+|+.++.+.....
T Consensus       461 ~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~  514 (607)
T KOG0051|consen  461 PQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNK  514 (607)
T ss_pred             ccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhc
Confidence            3                   1159999999999999999999999998865543

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.37  E-value=4.4e-13  Score=92.75  Aligned_cols=46  Identities=30%  Similarity=0.650  Sum_probs=41.8

Q ss_pred             cCCCChHHHHHHHHHHHHcCCC-ccccccccC-CCCHHHHHHHHHHHh
Q 023744           64 HRAFTPEEDEMIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNSTL  109 (278)
Q Consensus        64 k~~WT~EED~~Ll~~v~~~G~k-W~~IA~~lp-gRT~~~~knRw~~~l  109 (278)
                      +++||+|||++|++++.+||.+ |..||..|+ +||..||++||++++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999998 999999999 999999999998764

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.22  E-value=6.5e-12  Score=90.22  Aligned_cols=47  Identities=36%  Similarity=0.742  Sum_probs=40.3

Q ss_pred             CChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhhhh
Q 023744           67 FTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKC  113 (278)
Q Consensus        67 WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k~  113 (278)
                      ||+|||++|++++.+||++|..||+.|+.||..+|++||+..|+.++
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~   47 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKI   47 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTS
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccc
Confidence            99999999999999999999999999966999999999998676543

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.18  E-value=2.4e-11  Score=81.65  Aligned_cols=47  Identities=40%  Similarity=0.794  Sum_probs=44.1

Q ss_pred             cCCCChHHHHHHHHHHHHcC-CCccccccccCCCCHHHHHHHHHHHhh
Q 023744           64 HRAFTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLK  110 (278)
Q Consensus        64 k~~WT~EED~~Ll~~v~~~G-~kW~~IA~~lpgRT~~~~knRw~~~lk  110 (278)
                      +++||++||.+|+.++.+|| .+|..||..|++||..+|++||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            36899999999999999999 999999999999999999999988764

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.14  E-value=4e-11  Score=80.62  Aligned_cols=48  Identities=52%  Similarity=1.008  Sum_probs=44.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCC
Q 023744           12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLS   59 (278)
Q Consensus        12 kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~   59 (278)
                      +++||++||++|..++.+||..+|..||..|++|+..+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            468999999999999999997779999999999999999999988764

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.13  E-value=1.2e-11  Score=112.46  Aligned_cols=58  Identities=26%  Similarity=0.479  Sum_probs=53.9

Q ss_pred             cccccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCC
Q 023744            2 AFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP   60 (278)
Q Consensus         2 ~~~~~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p   60 (278)
                      |.++.+|++.+++||+|||++|++++..||. .|..||+.|++|+..+|+.||+.+++.
T Consensus        68 W~N~L~P~I~kgpWT~EED~lLlel~~~~Gn-KWs~IAk~LpGRTDnqIKNRWns~LrK  125 (249)
T PLN03212         68 WMNYLRPSVKRGGITSDEEDLILRLHRLLGN-RWSLIAGRIPGRTDNEIKNYWNTHLRK  125 (249)
T ss_pred             HHHhhchhcccCCCChHHHHHHHHHHHhccc-cHHHHHhhcCCCCHHHHHHHHHHHHhH
Confidence            6788999999999999999999999999995 599999999999999999999887754

>PLN03091 hypothetical protein; Provisional

Probab=99.08  E-value=3.1e-11  Score=117.17  Aligned_cols=58  Identities=26%  Similarity=0.464  Sum_probs=53.6

Q ss_pred             cccccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCC
Q 023744            2 AFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP   60 (278)
Q Consensus         2 ~~~~~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p   60 (278)
                      |.++.+++++||+||+|||++|++++++||. .|..||+.|+||+..+|+.||+..|+.
T Consensus        57 W~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn-KWskIAk~LPGRTDnqIKNRWnslLKK  114 (459)
T PLN03091         57 WINYLRPDLKRGTFSQQEENLIIELHAVLGN-RWSQIAAQLPGRTDNEIKNLWNSCLKK  114 (459)
T ss_pred             HHhccCCcccCCCCCHHHHHHHHHHHHHhCc-chHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            6788999999999999999999999999996 599999999999999999999876643

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.05  E-value=2e-10  Score=76.08  Aligned_cols=44  Identities=39%  Similarity=0.816  Sum_probs=41.5

Q ss_pred             CCChHHHHHHHHHHHHcC-CCccccccccCCCCHHHHHHHHHHHh
Q 023744           66 AFTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTL  109 (278)
Q Consensus        66 ~WT~EED~~Ll~~v~~~G-~kW~~IA~~lpgRT~~~~knRw~~~l  109 (278)
                      +||+|||..|+.++.+|| .+|..||..+++||..+|++||+.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 89999999999999999999997653

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.02  E-value=2.8e-10  Score=114.36  Aligned_cols=101  Identities=27%  Similarity=0.413  Sum_probs=86.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC---------------C--------ChHHHhhhCCCCCcccccccccccCCCcc-ccCC
Q 023744           11 IKGPWSPEEDEALQQLVQKHGP---------------R--------NWSLISKSIPGRSGKSCRLRWCNQLSPQV-EHRA   66 (278)
Q Consensus        11 ~kg~WT~EED~~L~~lV~kyG~---------------~--------nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i-~k~~   66 (278)
                      .-+.|+++||+.|...|..|-.               .        -|..|...||.|+.++++++-++..+|.- ++|.
T Consensus       307 ~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~~rg~  386 (607)
T KOG0051|consen  307 NLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFENKRGK  386 (607)
T ss_pred             hhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCccccccCC
Confidence            3478999999999999998811               0        17888999999999999885555444444 8999


Q ss_pred             CChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhhh
Q 023744           67 FTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK  112 (278)
Q Consensus        67 WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k  112 (278)
                      ||+||++.|..+|.++|+.|..|++.| ||.+.+|++||..+.+-.
T Consensus       387 wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g  431 (607)
T KOG0051|consen  387 WTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCG  431 (607)
T ss_pred             CCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccc
Confidence            999999999999999999999999999 999999999999888654

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.00  E-value=3e-10  Score=75.22  Aligned_cols=44  Identities=52%  Similarity=1.015  Sum_probs=41.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccccccc
Q 023744           14 PWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQ   57 (278)
Q Consensus        14 ~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~   57 (278)
                      +||+|||++|..++.+||..+|..||..+++|+..+|+.||.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            59999999999999999977899999999999999999999765

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=98.92  E-value=5.7e-10  Score=101.46  Aligned_cols=56  Identities=32%  Similarity=0.568  Sum_probs=52.3

Q ss_pred             cccccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccC
Q 023744            2 AFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQL   58 (278)
Q Consensus         2 ~~~~~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L   58 (278)
                      |.|+++|+++||.||+|||++|+++...+|.+ |..||++|||||...++.+|+..|
T Consensus        52 W~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr-Ws~IA~~LPGRTDNeIKN~Wnt~l  107 (238)
T KOG0048|consen   52 WTNYLRPDLKRGNFSDEEEDLIIKLHALLGNR-WSLIAGRLPGRTDNEVKNHWNTHL  107 (238)
T ss_pred             hhcccCCCccCCCCCHHHHHHHHHHHHHHCcH-HHHHHhhCCCcCHHHHHHHHHHHH
Confidence            78999999999999999999999999999965 999999999999999988885554

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.16  E-value=8.8e-07  Score=88.49  Aligned_cols=108  Identities=22%  Similarity=0.211  Sum_probs=92.7

Q ss_pred             cccccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHH
Q 023744            2 AFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHAR   81 (278)
Q Consensus         2 ~~~~~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~   81 (278)
                      |.++.++.+.++.|+.|||+.|+.+-..+|.. |..|+..+++|+..+|.+||.+.+.+..+ ..|+..++...+.-+..
T Consensus        62 w~~~lnp~lk~~~~~~eed~~li~l~~~~~~~-wstia~~~d~rt~~~~~ery~~~~~~~~s-~~~s~~~~~~~f~k~d~  139 (512)
T COG5147          62 WNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ-WSTIADYKDRRTAQQCVERYVNTLEDLSS-THDSKLQRRNEFDKIDP  139 (512)
T ss_pred             hhhhhchhcccccccHHHHHHHHHHHHhcCch-hhhhccccCccchHHHHHHHHHHhhhhhc-cccccccchhhccccCc
Confidence            45778999999999999999999999999977 99999999999999999999999976655 78999888888888888


Q ss_pred             cCCCccccccccCCCCHHHHHHHHHHHhhh
Q 023744           82 FGNKWATIARLLNGRTDNAIKNHWNSTLKR  111 (278)
Q Consensus        82 ~G~kW~~IA~~lpgRT~~~~knRw~~~lk~  111 (278)
                      |+..|..+....-.+-...|.|++.++...
T Consensus       140 f~~~~~~~~~~~~~~~~~~~~N~~~~~~~~  169 (512)
T COG5147         140 FNENSARRPDIYEDELLEREVNREASYRLR  169 (512)
T ss_pred             hhhhhhhhhhhhhcccchhhhhHHHHHHHH
Confidence            888888888776667777777777555444

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.91  E-value=1.9e-05  Score=57.06  Aligned_cols=49  Identities=16%  Similarity=0.367  Sum_probs=42.5

Q ss_pred             ccCCCChHHHHHHHHHHHHcCC-Cc---cccccccC-CC-CHHHHHHHHHHHhhh
Q 023744           63 EHRAFTPEEDEMIIRAHARFGN-KW---ATIARLLN-GR-TDNAIKNHWNSTLKR  111 (278)
Q Consensus        63 ~k~~WT~EED~~Ll~~v~~~G~-kW---~~IA~~lp-gR-T~~~~knRw~~~lk~  111 (278)
                      .+-.||+||...+++++..+|. +|   ..|++.+. .| |..+|+.|++.++.+
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            3567999999999999999996 99   99999874 45 999999999887644

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.63  E-value=2.9e-05  Score=75.69  Aligned_cols=51  Identities=18%  Similarity=0.449  Sum_probs=47.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccC
Q 023744            8 VDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQL   58 (278)
Q Consensus         8 ~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L   58 (278)
                      -.+...-||.+|+-+|++++..||.+||..||.++..|+...|+++|.+++
T Consensus        68 ~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   68 FPILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence            455667899999999999999999999999999999999999999999876

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.57  E-value=7.6e-05  Score=72.84  Aligned_cols=50  Identities=20%  Similarity=0.495  Sum_probs=45.5

Q ss_pred             cccCCCChHHHHHHHHHHHHcC-CCccccccccCCCCHHHHHHHHHHHhhh
Q 023744           62 VEHRAFTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLKR  111 (278)
Q Consensus        62 i~k~~WT~EED~~Ll~~v~~~G-~kW~~IA~~lpgRT~~~~knRw~~~lk~  111 (278)
                      +-...||.+|+.+||+++..|| ++|..||+++..|+..+|++||.+++-.
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~  120 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVN  120 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhc
Confidence            4457899999999999999999 8999999999999999999999887744

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.55  E-value=7.4e-05  Score=53.93  Aligned_cols=47  Identities=17%  Similarity=0.261  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCh---HHHhhhCC-CC-CcccccccccccC
Q 023744           12 KGPWSPEEDEALQQLVQKHGPRNW---SLISKSIP-GR-SGKSCRLRWCNQL   58 (278)
Q Consensus        12 kg~WT~EED~~L~~lV~kyG~~nW---~~Ia~~lp-~R-s~kqcr~Rw~n~L   58 (278)
                      +-.||+||..+++++|+.+|..+|   ..|++.|. .| +..||+.|+..+.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            457999999999999999998799   99999883 45 9999999887764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.50  E-value=6.2e-05  Score=64.82  Aligned_cols=53  Identities=25%  Similarity=0.409  Sum_probs=46.4

Q ss_pred             ccCCCChHHHHHHHHHHHHcCC-------CccccccccCCCCHHHHHHHHHHHhhhhhhcc
Q 023744           63 EHRAFTPEEDEMIIRAHARFGN-------KWATIARLLNGRTDNAIKNHWNSTLKRKCSSM  116 (278)
Q Consensus        63 ~k~~WT~EED~~Ll~~v~~~G~-------kW~~IA~~lpgRT~~~~knRw~~~lk~k~~~~  116 (278)
                      ....||.|||.+|.+.|..|-.       -+..+++.| +||+.+|.-|||+++|++....
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~~   62 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEEA   62 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHHH
Confidence            4578999999999999998743       289999999 9999999999999999986654

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.42  E-value=7.4e-05  Score=74.30  Aligned_cols=57  Identities=28%  Similarity=0.493  Sum_probs=51.5

Q ss_pred             cccCCCChHHHHHHHHHHHHcC-CCccccccccCCCCHHHHHHHHHHHhhhhhhcccc
Q 023744           62 VEHRAFTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLT  118 (278)
Q Consensus        62 i~k~~WT~EED~~Ll~~v~~~G-~kW~~IA~~lpgRT~~~~knRw~~~lk~k~~~~~~  118 (278)
                      ++.+-|+..||+.|--++.+|| +.|++|+.+++-.++.||++||+.++...+.....
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tew   62 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEW   62 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhh
Confidence            4678999999999999999999 56999999999999999999999999988776543

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.35  E-value=0.00045  Score=61.69  Aligned_cols=99  Identities=17%  Similarity=0.349  Sum_probs=74.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHhhhC---CCCCcccccccccccC----------------CCc-----cccCCCCh
Q 023744           14 PWSPEEDEALQQLVQKHGPRNWSLISKSI---PGRSGKSCRLRWCNQL----------------SPQ-----VEHRAFTP   69 (278)
Q Consensus        14 ~WT~EED~~L~~lV~kyG~~nW~~Ia~~l---p~Rs~kqcr~Rw~n~L----------------~p~-----i~k~~WT~   69 (278)
                      +|++++|-+|+.+|.+-.  +-..|+..+   ..-|.+.+.+||+..|                +|.     ..+.+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            699999999999999843  678887765   4557788899998876                222     14678999


Q ss_pred             HHHHHHHHHHHHcCC---Ccccccc-----ccCCCCHHHHHHHHHHHhhhhhh
Q 023744           70 EEDEMIIRAHARFGN---KWATIAR-----LLNGRTDNAIKNHWNSTLKRKCS  114 (278)
Q Consensus        70 EED~~Ll~~v~~~G~---kW~~IA~-----~lpgRT~~~~knRw~~~lk~k~~  114 (278)
                      +|+++|.........   .|.+|-.     +-++||+.++.+||..+.+..+.
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL  131 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLL  131 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchh
Confidence            999999997766544   3555532     23689999999999866665544

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.95  E-value=0.00052  Score=67.70  Aligned_cols=46  Identities=17%  Similarity=0.414  Sum_probs=42.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccccccc
Q 023744           11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQ   57 (278)
Q Consensus        11 ~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~   57 (278)
                      ....||.+|..+|++.|+.||. +|.+||+++.+|+..||..||.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhh-hHHHHHHHhCCCCHHHHHHHHHcC
Confidence            5568999999999999999995 699999999999999999999874

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.95  E-value=0.00071  Score=50.12  Aligned_cols=50  Identities=18%  Similarity=0.300  Sum_probs=32.5

Q ss_pred             cCCCChHHHHHHHHHHHHcC--------CC-ccccccccC-CCCHHHHHHHHHHHhhhhh
Q 023744           64 HRAFTPEEDEMIIRAHARFG--------NK-WATIARLLN-GRTDNAIKNHWNSTLKRKC  113 (278)
Q Consensus        64 k~~WT~EED~~Ll~~v~~~G--------~k-W~~IA~~lp-gRT~~~~knRw~~~lk~k~  113 (278)
                      +.+||.|||.+|++.|+.+.        |+ |.++++.-+ .+|..+.|+||.+.|+.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            45899999999999997542        22 999998877 8999999999998887664

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.74  E-value=0.00086  Score=58.47  Aligned_cols=53  Identities=23%  Similarity=0.390  Sum_probs=45.3

Q ss_pred             ccCCCChHHHHHHHHHHHHcCCC-------ccccccccCCCCHHHHHHHHHHHhhhhhhcc
Q 023744           63 EHRAFTPEEDEMIIRAHARFGNK-------WATIARLLNGRTDNAIKNHWNSTLKRKCSSM  116 (278)
Q Consensus        63 ~k~~WT~EED~~Ll~~v~~~G~k-------W~~IA~~lpgRT~~~~knRw~~~lk~k~~~~  116 (278)
                      ++..||.|||.+|-+.|..|+..       +..++..| +||..+|..|||++++++....
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Yee~   63 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQEQ   63 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHHHH
Confidence            56789999999999999988753       67777888 9999999999999999886543

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.73  E-value=0.0011  Score=66.55  Aligned_cols=49  Identities=16%  Similarity=0.460  Sum_probs=44.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccccccc
Q 023744            8 VDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQ   57 (278)
Q Consensus         8 ~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~   57 (278)
                      ..-.++.||.+|+-+|++.|+.|| .+|.+|+.++..|+..||..|+.+.
T Consensus       249 ~~~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEAIEMYG-DDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             cccCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccCCCCHHHHHHHHHhc
Confidence            345678899999999999999999 4699999999999999999999764

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.66  E-value=0.001  Score=57.37  Aligned_cols=48  Identities=23%  Similarity=0.549  Sum_probs=41.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC--C----ChHHHhhhCCCCCcccccccccccCC
Q 023744           11 IKGPWSPEEDEALQQLVQKHGP--R----NWSLISKSIPGRSGKSCRLRWCNQLS   59 (278)
Q Consensus        11 ~kg~WT~EED~~L~~lV~kyG~--~----nW~~Ia~~lp~Rs~kqcr~Rw~n~L~   59 (278)
                      ++..||.|||.+|-+.|.+|-.  +    -+.++++.+ +||...|..||+.++.
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VR   56 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVR   56 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHH
Confidence            4568999999999999999831  1    288899998 9999999999998874

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.64  E-value=0.00077  Score=49.92  Aligned_cols=50  Identities=26%  Similarity=0.492  Sum_probs=32.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC------CC--hHHHhhhCC-CCCcccccccccccCCCc
Q 023744           12 KGPWSPEEDEALQQLVQKHGP------RN--WSLISKSIP-GRSGKSCRLRWCNQLSPQ   61 (278)
Q Consensus        12 kg~WT~EED~~L~~lV~kyG~------~n--W~~Ia~~lp-~Rs~kqcr~Rw~n~L~p~   61 (278)
                      +-+||.|||++|.++|+.+..      +|  |.++++.-+ .++-.+-++||.+.|.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~   60 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR   60 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            457999999999999976621      12  999998877 999999999999988654

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.51  E-value=0.0022  Score=64.52  Aligned_cols=44  Identities=14%  Similarity=0.368  Sum_probs=41.4

Q ss_pred             ccCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHH
Q 023744           63 EHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWN  106 (278)
Q Consensus        63 ~k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~  106 (278)
                      .+..||.+|.-+|++++..||-+|.+||.++.+||..+|-.||.
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL  295 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFL  295 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHH
Confidence            45789999999999999999999999999999999999999873

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.50  E-value=0.0013  Score=50.12  Aligned_cols=48  Identities=31%  Similarity=0.598  Sum_probs=33.3

Q ss_pred             cCCCChHHHHHHHHHHHH------cC--C------CccccccccC----CCCHHHHHHHHHHHhhh
Q 023744           64 HRAFTPEEDEMIIRAHAR------FG--N------KWATIARLLN----GRTDNAIKNHWNSTLKR  111 (278)
Q Consensus        64 k~~WT~EED~~Ll~~v~~------~G--~------kW~~IA~~lp----gRT~~~~knRw~~~lk~  111 (278)
                      +..||.+|...||+++..      ++  +      -|..||..|.    .||+.||+++|.++.+.
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~   66 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKK   66 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            357999999999999876      21  1      2999998773    69999999999765544

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.29  E-value=0.0024  Score=63.12  Aligned_cols=43  Identities=16%  Similarity=0.431  Sum_probs=40.7

Q ss_pred             cCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHH
Q 023744           64 HRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWN  106 (278)
Q Consensus        64 k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~  106 (278)
                      ...||.+|..+|++.+..||-.|.+||+++.+||..||--||-
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL  321 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFL  321 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHH
Confidence            4589999999999999999999999999999999999999884

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=96.05  E-value=0.012  Score=57.22  Aligned_cols=84  Identities=17%  Similarity=0.330  Sum_probs=66.8

Q ss_pred             CChHHHhhhCCCCCcccccccccccCCC-------------------------ccccCCCChHHHHHHHHHHHHcCCCcc
Q 023744           33 RNWSLISKSIPGRSGKSCRLRWCNQLSP-------------------------QVEHRAFTPEEDEMIIRAHARFGNKWA   87 (278)
Q Consensus        33 ~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p-------------------------~i~k~~WT~EED~~Ll~~v~~~G~kW~   87 (278)
                      +.|.-+.-..+.|...-...||.....+                         .++...||.||-+-|+++++.|.-+|-
T Consensus        74 ~~W~w~pFtn~aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~  153 (445)
T KOG2656|consen   74 RPWKWVPFTNSARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF  153 (445)
T ss_pred             CCceeeccCCccccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence            4587777777778887788888776322                         123456999999999999999999999


Q ss_pred             ccccc-----cCC-CCHHHHHHHHHHHhhhhhhcc
Q 023744           88 TIARL-----LNG-RTDNAIKNHWNSTLKRKCSSM  116 (278)
Q Consensus        88 ~IA~~-----lpg-RT~~~~knRw~~~lk~k~~~~  116 (278)
                      .|+..     ++. ||-..+|+||+.+.++.+...
T Consensus       154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr  188 (445)
T KOG2656|consen  154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKAR  188 (445)
T ss_pred             EEeeccchhhccccccHHHHHHHHHHHHHHHHHcc
Confidence            99987     555 999999999999888766544

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.89  E-value=0.0069  Score=45.34  Aligned_cols=47  Identities=36%  Similarity=0.519  Sum_probs=38.8

Q ss_pred             CCCCCHHHHHHHHHHHHHh-----CCC-----------ChHHHhhhC-----CCCCcccccccccccC
Q 023744           12 KGPWSPEEDEALQQLVQKH-----GPR-----------NWSLISKSI-----PGRSGKSCRLRWCNQL   58 (278)
Q Consensus        12 kg~WT~EED~~L~~lV~ky-----G~~-----------nW~~Ia~~l-----p~Rs~kqcr~Rw~n~L   58 (278)
                      +..||.+|.+.|+++|.+|     +..           -|..|+..|     +.|+..+|+.+|.++.
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            4679999999999999988     211           199999877     4799999999998764

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.78  E-value=0.0029  Score=48.17  Aligned_cols=46  Identities=26%  Similarity=0.562  Sum_probs=32.7

Q ss_pred             CCCCHHHHHHHHHHHHH--h----C--CC-----ChHHHhhhC----CCCCcccccccccccC
Q 023744           13 GPWSPEEDEALQQLVQK--H----G--PR-----NWSLISKSI----PGRSGKSCRLRWCNQL   58 (278)
Q Consensus        13 g~WT~EED~~L~~lV~k--y----G--~~-----nW~~Ia~~l----p~Rs~kqcr~Rw~n~L   58 (278)
                      -.||.+|...|+.++..  +    +  ..     -|..||..|    -.|++.||+.||.+..
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~   64 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK   64 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            46999999999999987  2    1  11     299999987    4799999999998753

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.73  E-value=0.0075  Score=57.35  Aligned_cols=47  Identities=21%  Similarity=0.526  Sum_probs=43.0

Q ss_pred             cCCCChHHHHHHHHHHHHcC-CCccccccccCCCCHHHHHHHHHHHhh
Q 023744           64 HRAFTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLK  110 (278)
Q Consensus        64 k~~WT~EED~~Ll~~v~~~G-~kW~~IA~~lpgRT~~~~knRw~~~lk  110 (278)
                      -..|+.+|+.+|++.....| ++|..||.++..|+...||.||.++..
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            35699999999999999999 789999999999999999999987764

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=95.43  E-value=0.0056  Score=53.45  Aligned_cols=50  Identities=20%  Similarity=0.541  Sum_probs=40.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCC------hHHHhhhCCCCCcccccccccccCC
Q 023744            9 DRIKGPWSPEEDEALQQLVQKHGPRN------WSLISKSIPGRSGKSCRLRWCNQLS   59 (278)
Q Consensus         9 ~~~kg~WT~EED~~L~~lV~kyG~~n------W~~Ia~~lp~Rs~kqcr~Rw~n~L~   59 (278)
                      ..++..||.|||.+|-+.|.+|+...      ...++..| +|+...|..||+.++.
T Consensus         2 k~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vr   57 (170)
T PRK13923          2 KTRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVR   57 (170)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHH
Confidence            34667899999999999999996432      56666776 9999999999977664

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=95.27  E-value=0.038  Score=60.20  Aligned_cols=99  Identities=15%  Similarity=0.360  Sum_probs=76.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccc-------ccccc------C----------------------
Q 023744           14 PWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRL-------RWCNQ------L----------------------   58 (278)
Q Consensus        14 ~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~-------Rw~n~------L----------------------   58 (278)
                      .|+.-|=..++.+..+||..+...||..|.+++...++.       ||..+      +                      
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~~  905 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIGK  905 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999888999999998888866653       22221      0                      


Q ss_pred             ---------------CCccccCCCChHHHHHHHHHHHHcC-CCcccccc------------ccCCCCHHHHHHHHHHHhh
Q 023744           59 ---------------SPQVEHRAFTPEEDEMIIRAHARFG-NKWATIAR------------LLNGRTDNAIKNHWNSTLK  110 (278)
Q Consensus        59 ---------------~p~i~k~~WT~EED~~Ll~~v~~~G-~kW~~IA~------------~lpgRT~~~~knRw~~~lk  110 (278)
                                     .+..++..||+|||..|+-.+.+|| .+|..|-.            +|..||+..|..|-+.+++
T Consensus       906 k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~  985 (1033)
T PLN03142        906 KLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR  985 (1033)
T ss_pred             HHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence                           1223455799999999999999999 56988833            2357999999999987775


Q ss_pred             hh
Q 023744          111 RK  112 (278)
Q Consensus       111 ~k  112 (278)
                      -.
T Consensus       986 ~~  987 (1033)
T PLN03142        986 LI  987 (1033)
T ss_pred             HH
Confidence            54

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.12  E-value=0.0084  Score=57.01  Aligned_cols=47  Identities=19%  Similarity=0.383  Sum_probs=44.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCC
Q 023744           13 GPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLS   59 (278)
Q Consensus        13 g~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~   59 (278)
                      --|..+|+-+|++.....|.+||..||.++..|....|+.||.+++.
T Consensus        64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            35999999999999999999999999999999999999999998764

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=94.64  E-value=0.035  Score=41.44  Aligned_cols=48  Identities=23%  Similarity=0.510  Sum_probs=38.8

Q ss_pred             cCCCChHHHHHHHHHHHHcCC-----------------Ccccccccc-----CCCCHHHHHHHHHHHhhh
Q 023744           64 HRAFTPEEDEMIIRAHARFGN-----------------KWATIARLL-----NGRTDNAIKNHWNSTLKR  111 (278)
Q Consensus        64 k~~WT~EED~~Ll~~v~~~G~-----------------kW~~IA~~l-----pgRT~~~~knRw~~~lk~  111 (278)
                      ...||.+|...|++++.+|-.                 -|..|+..|     +.||..+++.+|.++...
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~   71 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK   71 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            357999999999999987621                 299999876     259999999999876644

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=90.99  E-value=0.34  Score=37.15  Aligned_cols=48  Identities=35%  Similarity=0.670  Sum_probs=35.1

Q ss_pred             CCChHHHHHHHHHHHHc---CC----------CccccccccC---C--CCHHHHHHHHHHHhhhhhh
Q 023744           66 AFTPEEDEMIIRAHARF---GN----------KWATIARLLN---G--RTDNAIKNHWNSTLKRKCS  114 (278)
Q Consensus        66 ~WT~EED~~Ll~~v~~~---G~----------kW~~IA~~lp---g--RT~~~~knRw~~~lk~k~~  114 (278)
                      .||+++++.|++++.+.   |+          .|..|+..|.   |  .+..+|++|| ..||+...
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~-~~lk~~y~   66 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKW-KTLKKDYR   66 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHH-HHHHHHHH
Confidence            59999999999997543   22          2888988763   2  4779999999 55555443

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=90.63  E-value=0.27  Score=40.56  Aligned_cols=51  Identities=20%  Similarity=0.488  Sum_probs=39.1

Q ss_pred             ccccCCCChHHHHHHHHHHHHcCC----Cccccccc------------cCCCCHHHHHHHHHHHhhh
Q 023744           61 QVEHRAFTPEEDEMIIRAHARFGN----KWATIARL------------LNGRTDNAIKNHWNSTLKR  111 (278)
Q Consensus        61 ~i~k~~WT~EED~~Ll~~v~~~G~----kW~~IA~~------------lpgRT~~~~knRw~~~lk~  111 (278)
                      ..++..||+|||.-|+-.+.+||-    .|..|-..            +..||+..|..|-+.+++-
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~  112 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL  112 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence            456789999999999999999997    58887653            2469999999998777653

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=89.81  E-value=0.26  Score=48.11  Aligned_cols=43  Identities=28%  Similarity=0.513  Sum_probs=40.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccccccc
Q 023744           14 PWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQ   57 (278)
Q Consensus        14 ~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~   57 (278)
                      +|+.+|-+++.+++...|. ++.+|+..+|+|..+|+..+|.+-
T Consensus       367 ~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP~R~RkqIKaKfi~E  409 (507)
T COG5118         367 RWSKKEIEKFYKALSIWGT-DFSLISSLFPNRERKQIKAKFIKE  409 (507)
T ss_pred             cccHHHHHHHHHHHHHhcc-hHHHHHHhcCchhHHHHHHHHHHH
Confidence            7999999999999999995 699999999999999999999764

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=89.71  E-value=0.34  Score=47.34  Aligned_cols=47  Identities=21%  Similarity=0.311  Sum_probs=43.5

Q ss_pred             CCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhh
Q 023744           65 RAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR  111 (278)
Q Consensus        65 ~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~  111 (278)
                      .+||.+|-++..++....|-.++-|+.+||.|...|||.+|.+--|+
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~  412 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV  412 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence            48999999999999999999999999999999999999999765554

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=89.23  E-value=0.46  Score=47.37  Aligned_cols=49  Identities=20%  Similarity=0.260  Sum_probs=44.2

Q ss_pred             cCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhhh
Q 023744           64 HRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK  112 (278)
Q Consensus        64 k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k  112 (278)
                      ...||.||-.++-++...||.++++|-..||.|+...+...|++.-|.+
T Consensus       187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~  235 (534)
T KOG1194|consen  187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTR  235 (534)
T ss_pred             cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999999999999999888766543

>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []

Probab=89.20  E-value=0.5  Score=36.54  Aligned_cols=31  Identities=42%  Similarity=0.842  Sum_probs=19.0

Q ss_pred             CCCCCCCCCHHHHHHH--------HHHHHHhCCCChHHHhhh
Q 023744            8 VDRIKGPWSPEEDEAL--------QQLVQKHGPRNWSLISKS   41 (278)
Q Consensus         8 ~~~~kg~WT~EED~~L--------~~lV~kyG~~nW~~Ia~~   41 (278)
                      |....|-||+|||+.|        .+++++||   +..|..+
T Consensus        43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~~R   81 (87)
T PF11626_consen   43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIERR   81 (87)
T ss_dssp             -TT-TT---HHHHHHHTS--HHHHHHHHHHH----HHHHHHH
T ss_pred             CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHHHH
Confidence            5677899999999999        56677887   6666654

The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=88.47  E-value=0.66  Score=31.91  Aligned_cols=42  Identities=26%  Similarity=0.401  Sum_probs=32.3

Q ss_pred             hHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhh
Q 023744           69 PEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR  111 (278)
Q Consensus        69 ~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~  111 (278)
                      ++++..++.++...|-.|.+||+.+ |.+...|+.+....+++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~   53 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK   53 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence            4677888999999999999999999 99999999998776653

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=87.48  E-value=0.51  Score=44.99  Aligned_cols=49  Identities=20%  Similarity=0.350  Sum_probs=38.7

Q ss_pred             cCCCChHHHHHHHHHHHHc----------CCCcccccccc----CCCCHHHHHHHHHHHhhhh
Q 023744           64 HRAFTPEEDEMIIRAHARF----------GNKWATIARLL----NGRTDNAIKNHWNSTLKRK  112 (278)
Q Consensus        64 k~~WT~EED~~Ll~~v~~~----------G~kW~~IA~~l----pgRT~~~~knRw~~~lk~k  112 (278)
                      ...|+.+|-..||++..+.          +.-|..||+.+    --||+.+|+++|.++.++-
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Y  116 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKY  116 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence            3689999999999987532          23499999854    2499999999998777663

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=82.97  E-value=1.4  Score=36.24  Aligned_cols=34  Identities=35%  Similarity=0.479  Sum_probs=28.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC---CChHHHhhhC
Q 023744            9 DRIKGPWSPEEDEALQQLVQKHGP---RNWSLISKSI   42 (278)
Q Consensus         9 ~~~kg~WT~EED~~L~~lV~kyG~---~nW~~Ia~~l   42 (278)
                      ...+..||.+||.-|+-.+.+||-   ++|..|...+
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~I   82 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEI   82 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence            566778999999999999999998   7899998765

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=82.07  E-value=0.71  Score=44.02  Aligned_cols=46  Identities=24%  Similarity=0.374  Sum_probs=37.3

Q ss_pred             CCCCHHHHHHHHHHHHHh---------CCCChHHHhhhC----CCCCcccccccccccC
Q 023744           13 GPWSPEEDEALQQLVQKH---------GPRNWSLISKSI----PGRSGKSCRLRWCNQL   58 (278)
Q Consensus        13 g~WT~EED~~L~~lV~ky---------G~~nW~~Ia~~l----p~Rs~kqcr~Rw~n~L   58 (278)
                      ..|+.+|-..|+++....         ....|..||+.+    .-|++.+|+.+|.|..
T Consensus        55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~  113 (345)
T KOG4282|consen   55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK  113 (345)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            679999999999998643         123499999955    5799999999998754

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=80.14  E-value=1.5  Score=33.51  Aligned_cols=43  Identities=26%  Similarity=0.603  Sum_probs=31.7

Q ss_pred             CCCHHHHHHHHHHHHHh---CCC---------ChHHHhhhCC-----CCCcccccccccc
Q 023744           14 PWSPEEDEALQQLVQKH---GPR---------NWSLISKSIP-----GRSGKSCRLRWCN   56 (278)
Q Consensus        14 ~WT~EED~~L~~lV~ky---G~~---------nW~~Ia~~lp-----~Rs~kqcr~Rw~n   56 (278)
                      .||+++++.|++++...   |..         .|..|+..|.     ..+..||+.||..
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~   60 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKT   60 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence            59999999999998655   222         2999998873     3455788888744

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	278
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		5e-34
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		5e-34
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		6e-34
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		1e-32
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		6e-32
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		2e-27
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		9e-19
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		1e-15
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		4e-14
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		5e-14
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		7e-13
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		1e-12
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		2e-12
1mbe_A	53	Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53		2e-05
1guu_A	52	Crystal Structure Of C-Myb R1 Length = 52		2e-05
2d9a_A	60	Solution Structure Of Rsgi Ruh-050, A Myb Dna-Bindi		1e-04

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  141 bits (355), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 82/103 (79%)
Query: 11  IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPE 70
           IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T E
Sbjct: 3   IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 71  EDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKC 113
           ED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK 
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  140 bits (354), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 82/103 (79%)
Query: 11  IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPE 70
           IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T E
Sbjct: 3   IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 71  EDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKC 113
           ED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK 
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  140 bits (354), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 82/103 (79%)
Query: 11  IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPE 70
           IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T E
Sbjct: 57  IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 116
Query: 71  EDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKC 113
           ED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK 
Sbjct: 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  136 bits (343), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 59/107 (55%), Positives = 81/107 (75%)
Query: 9   DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFT 68
           D +KGPW+ EED+ + +LV+K+G + W+LI+K + GR GK CR RW N L+P+V+  ++T
Sbjct: 4   DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWT 63
Query: 69  PEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 115
            EED +I  AH   GN+WA IA+LL GRTDNA+KNHWNST+KRK  +
Sbjct: 64  EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVDT 110

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  134 bits (336), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 59/101 (58%), Positives = 79/101 (78%)
Query: 12  KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEE 71
           KGPW+ EED+ + + VQK+GP+ WS I+K + GR GK CR RW N L+P+V+  ++T EE
Sbjct: 27  KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 86
Query: 72  DEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112
           D +I +AH R GN+WA IA+LL GRTDNA+KNHWNST++RK
Sbjct: 87  DRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 78/114 (68%)
Query: 11  IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPE 70
           +KGP++  ED+ +++ V+++GP+NW  I+  +P RS K CR RW N L P V   A+TPE
Sbjct: 1   MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 71  EDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFL 124
           EDE I R + + G+KW+ IA+L+ GRTDNAIKN WNS++ ++ S+      I L
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILL 114

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 90.5 bits (223), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 12  KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEE 71
           K  ++PEEDE L++ V +HG  +W +I+ + P R+ + CR RW N L+P + H  +T EE
Sbjct: 11  KQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69
Query: 72  DEMIIRAHARFGNKWATIARLLNGRTDNAIKNHW 105
           D ++++    +G +WA IA+   GRTD  IKN W
Sbjct: 70  DALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 60/94 (63%)
Query: 12  KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEE 71
           K  ++ EED  LQQLV ++G ++W  IS+ +  R+ + CR RW N ++P +    ++PEE
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60
Query: 72  DEMIIRAHARFGNKWATIARLLNGRTDNAIKNHW 105
           D ++ + +A +G KW  I++ L  R+DN I+N W
Sbjct: 61  DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 42/52 (80%)
Query: 62  VEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKC 113
           V+  ++T EED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK 
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 43/53 (81%)
Query: 61  QVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKC 113
           +V+  ++T EED ++ +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK 
Sbjct: 2   EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/51 (58%), Positives = 40/51 (78%)
Query: 11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
          IKGPW+ EED+ L +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+
Sbjct: 2  IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 40/51 (78%)
Query: 11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
          IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+
Sbjct: 2  IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 40/51 (78%)
Query: 11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
          IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+
Sbjct: 2  IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
          K  W+ EEDE L++LV+++G  +W +I+  +P R+   C+ RW   L+P+
Sbjct: 3  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52

>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1 Length = 52

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
          K  W+ EEDE L++LV+++G  +W +I+  +P R+   C+ RW   L+P+
Sbjct: 3  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52

>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding Domain In Mouse Cdna Length = 60

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 15 WSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLS 59
          W+ EEDE L+ LV++ G ++W  ++   P R+ + C+ RW   LS
Sbjct: 11 WTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	278
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	7e-74
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	3e-73
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	2e-72
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	4e-68
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	1e-67
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	1e-66
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	3e-40
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	2e-32
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	3e-04
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	5e-32
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	5e-30
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	1e-07
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	1e-27
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	6e-16
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	1e-06
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	1e-14
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	4e-06
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	2e-13
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	1e-06
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	4e-13
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	6e-07
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-12
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-08
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	1e-11
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	2e-04
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	1e-11
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	2e-10
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	3e-10
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	1e-06
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	4e-10
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	3e-09
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	3e-09
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	4e-04
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	7e-09
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	8e-09
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	2e-04
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	2e-08
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	2e-08
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	3e-07
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	6e-05
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	9e-07
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	2e-05
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	3e-05
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	6e-05
2cjj_A	93	Radialis; plant development, DNA-binding protein,	4e-04

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  220 bits (562), Expect = 7e-74
 Identities = 62/104 (59%), Positives = 83/104 (79%)

Query: 9   DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFT 68
           + IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 60

Query: 69  PEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112
            EED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  219 bits (561), Expect = 3e-73
 Identities = 57/135 (42%), Positives = 83/135 (61%), Gaps = 4/135 (2%)

Query: 11  IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPE 70
           +KGP++  ED+ +++ V+++GP+NW  I+  +P RS K CR RW N L P V   A+TPE
Sbjct: 1   MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 71  EDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNGYD 130
           EDE I R + + G+KW+ IA+L+ GRTDNAIKN WNS++ ++ S+      I L     D
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILL----PD 116

Query: 131 ADFGNSIQQQPLKLK 145
                     P KL+
Sbjct: 117 RSKKRKAADVPKKLE 131

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  217 bits (555), Expect = 2e-72
 Identities = 59/104 (56%), Positives = 80/104 (76%)

Query: 9   DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFT 68
           +  KGPW+ EED+ + + VQK+GP+ WS I+K + GR GK CR RW N L+P+V+  ++T
Sbjct: 24  ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 83

Query: 69  PEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112
            EED +I +AH R GN+WA IA+LL GRTDNA+KNHWNST++RK
Sbjct: 84  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  205 bits (524), Expect = 4e-68
 Identities = 36/101 (35%), Positives = 62/101 (61%)

Query: 12  KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEE 71
           K  ++ EED  LQQLV ++G ++W  IS+ +  R+ + CR RW N ++P +    ++PEE
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60

Query: 72  DEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112
           D ++ + +A +G KW  I++ L  R+DN I+N W    + +
Sbjct: 61  DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHR 101

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  204 bits (522), Expect = 1e-67
 Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 1/105 (0%)

Query: 12  KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEE 71
           K  ++PEEDE L++ V +HG  +W +I+ + P R+ + CR RW N L+P + H  +T EE
Sbjct: 11  KQKFTPEEDEMLKRAVAQHG-SDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69

Query: 72  DEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSM 116
           D ++++    +G +WA IA+   GRTD  IKN W +   +     
Sbjct: 70  DALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQ 114

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  204 bits (520), Expect = 1e-66
 Identities = 62/104 (59%), Positives = 83/104 (79%)

Query: 9   DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFT 68
           + IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 114

Query: 69  PEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112
            EED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  136 bits (344), Expect = 3e-40
 Identities = 36/106 (33%), Positives = 61/106 (57%), Gaps = 5/106 (4%)

Query: 11  IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPE 70
            K  W+ EEDE L++LV+++G  +W +I+  +P R+   C+ RW   L+P++    +T E
Sbjct: 5   GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKE 64

Query: 71  EDEMIIRAHARFGNK-WATIARLLNGRTDNAI----KNHWNSTLKR 111
           ED+ +I+   ++G K W+ IA+ L GR          NH N  +K+
Sbjct: 65  EDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 110

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score =  112 bits (284), Expect = 2e-32
 Identities = 30/51 (58%), Positives = 40/51 (78%)

Query: 11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
          IKGPW+ EED+ L +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+
Sbjct: 2  IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 66 AFTPEEDEMIIRAHARFG-NKWATIARLLNGRT 97
           +T EED+ +I+   ++G  +W+ IA+ L GR 
Sbjct: 5  PWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRI 37

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score =  111 bits (281), Expect = 5e-32
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEE 71
           G W   EDE L+  V K+G   WS I+  +  +S K C+ RW   L P ++   ++   
Sbjct: 9  GGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPS 68

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score =  106 bits (266), Expect = 5e-30
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
           K  W+ EEDE L++LV+++G  +W +I+  +P R+   C+ RW   L+P+
Sbjct: 2  GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 46.8 bits (112), Expect = 1e-07
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 67  FTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLK 110
           +T EEDE + +   + G + W  IA  L  RTD   ++ W   L 
Sbjct: 6   WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score =  100 bits (251), Expect = 1e-27
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60
          K  W+ EEDE L+ LV++ G ++W  ++   P R+ + C+ RW   LS 
Sbjct: 8  KVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSG 56

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 69.3 bits (170), Expect = 6e-16
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP--GRSGKSCRLRWCN 56
          +  W  EED+ L+  V+K+G  NWS I        R+    + RW  
Sbjct: 2  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 65  RAFTPEEDEMIIRAHARFGN-KWATIARL--LNGRTDNAIKNHWNSTLKRK 112
           +A+  EED+ +     ++G   W+ I      N RT   +K+ W +  K K
Sbjct: 3   QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 66.0 bits (161), Expect = 1e-14
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 10 RIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIP--GRSGKSCRLRWCN 56
          R +  W  EED+ L+  V+K+G  NWS I        R+    + RW  
Sbjct: 8  RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 56

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 42.9 bits (101), Expect = 4e-06
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 64  HRAFTPEEDEMIIRAHARFGN-KWATIARL--LNGRTDNAIKNHWNSTLKRK 112
            +A+  EED+ +     ++G   W+ I      N RT   +K+ W +  K K
Sbjct: 10  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 61

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 62.8 bits (153), Expect = 2e-13
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 10 RIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIP--GRSGKSCRLRWCN 56
            K  W+ EE E ++  VQK+G  NW+ ISK+ P   R+    + RW  
Sbjct: 9  TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRT 57

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 43.9 bits (104), Expect = 1e-06
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 56  NQLSPQVEHRAFTPEEDEMIIRAHARFGN-KWATIARL--LNGRTDNAIKNHWNSTLKR 111
           +  +   + + +T EE E +     ++G   WA I++      RT   IK+ W  T+KR
Sbjct: 3   DSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWR-TMKR 60

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 61.6 bits (150), Expect = 4e-13
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP--GRSGKSCRLRWCN 56
          K  W+ EE E ++  VQK+G  NW+ ISK+ P   R+    + RW  
Sbjct: 2  KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRT 48

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 44.6 bits (106), Expect = 6e-07
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 65  RAFTPEEDEMIIRAHARFGN-KWATIARL--LNGRTDNAIKNHWNSTLKR 111
           + +T EE E +     ++G   WA I++      RT   IK+ W  T+KR
Sbjct: 3   QKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWR-TMKR 51

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 59.4 bits (144), Expect = 3e-12
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRA 66
          K  WS EE+E L  L +   P  W  I+  I GR+   C   +   L    +  +
Sbjct: 9  KTEWSREEEEKLLHLAKLM-PTQWRTIA-PIIGRTAAQCLEHYEFLLDKAAQRDS 61

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 49.8 bits (119), Expect = 1e-08
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 60  PQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKC 113
              +   ++ EE+E ++        +W TIA ++ GRT      H+   L +  
Sbjct: 5   SSGKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLLDKAA 57

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 62.3 bits (150), Expect = 1e-11
 Identities = 33/187 (17%), Positives = 69/187 (36%), Gaps = 19/187 (10%)

Query: 12  KGPWSPEEDEALQQLVQKH-----GPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRA 66
           K  ++ EEDE +  +V+K+         +  IS  +P  +G S R R+   LS ++E+  
Sbjct: 8   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 67

Query: 67  FTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNC 126
              +  +++       GN   T           +IK  +++  +    ++  +   + + 
Sbjct: 68  EVDKFGKLVRDDD---GNLIKT------KVLPPSIKRKFSA-DEDYTLAIAVKKQFYRDL 117

Query: 127 NGYDADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMSPGSPSGSDVSDSSVPGLSSNYNI 186
              D D G S+    +  + + +A +   +T      PGS        +           
Sbjct: 118 FQIDPDTGRSL----ITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIAREF 173

Query: 187 YKPVARS 193
           +K  A  
Sbjct: 174 FKHFAEE 180

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 60  PQVEHRAFTPEEDEMI---IRAHARFGNK---WATIARLLNGRTDNAIKNHWNSTLKRK 112
           P     +FT EEDE I   +R +         +  I+  +   T N+I++ +   L ++
Sbjct: 4   PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR 62

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 57.8 bits (140), Expect = 1e-11
 Identities = 10/48 (20%), Positives = 21/48 (43%)

Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLS 59
             W+ +E+ AL + V   G  NW  ++  +  ++ + C   +    S
Sbjct: 8  DPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 56.7 bits (136), Expect = 2e-10
 Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 10/88 (11%)

Query: 10  RIKGPWSPEEDEALQQLVQKHGPRNWSLI----SKSIPGRSGKSCRLRWCN-----QLSP 60
           RI+ P++  E E L + V+  G   W  +     +++  R+    + +W        ++P
Sbjct: 29  RIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAP 88

Query: 61  QVEHRAFTPEE-DEMIIRAHARFGNKWA 87
           Q    A  P+E  + ++ A A +    +
Sbjct: 89  QQRRGAPVPQELLDRVLAAQAYWSVDSS 116

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 54.6 bits (131), Expect = 3e-10
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRW 54
           G ++PEE E L++L  KHG  +W+ I  ++ GRS  S + R 
Sbjct: 23 VGKYTPEEIEKLKELRIKHG-NDWATIGAAL-GRSASSVKDRC 63

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 67  FTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 115
           +TPEE E +     + GN WATI   L GR+ +++K+     +K  C++
Sbjct: 26  YTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRC-RLMKDTCNT 72

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 55.1 bits (132), Expect = 4e-10
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 10/92 (10%)

Query: 10  RIKGPWSPEEDEALQQLVQKHGPRNWSLISK----SIPGRSGKSCRLRWCN-----QLSP 60
           RI+ P+S  E EAL Q V+K G   W  +          R+    + +W       ++SP
Sbjct: 11  RIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISP 70

Query: 61  QVEHRAFTPEE-DEMIIRAHARFGNKWATIAR 91
           Q       P+E    ++ AH  +  +     +
Sbjct: 71  QQRRGEPVPQELLNRVLNAHGYWTQQQMQQLQ 102

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 52.9 bits (126), Expect = 3e-09
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 10/88 (11%)

Query: 10  RIKGPWSPEEDEALQQLVQKHGPRNWSLISK----SIPGRSGKSCRLRWCNQL------S 59
           RI+ P+S  E EAL + V+  G   W  +      +   R+    + +W   +       
Sbjct: 15  RIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAP 74

Query: 60  PQVEHRAFTPEEDEMIIRAHARFGNKWA 87
            Q        +  + ++ AHA +  +  
Sbjct: 75  QQRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 51.9 bits (124), Expect = 3e-09
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 14 PWSPEEDEALQQLVQKHGPRNWSLISK----SIPGRSGKSCRLRWCN-----QLSPQVEH 64
          P+S  E EAL + V+  G   W  +      +   R+    + +W        ++PQ   
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 65 RAFTPEED-EMIIRAHARFGNK 85
              P++  + ++ AHA +  +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 37.7 bits (87), Expect = 4e-04
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 65  RAFTPEEDEMIIRAHARFG-NKWATIARL----LNGRTDNAIKNHWNSTLKRKCSSMLTE 119
           R F+  E E ++ A    G  +W  +        + RT   +K+ W + +     +    
Sbjct: 1   RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQR 60

Query: 120 NG 121
            G
Sbjct: 61  RG 62

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 50.6 bits (121), Expect = 7e-09
 Identities = 10/46 (21%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 12 KGPWSPEEDEALQQLVQKH---GPRNWSLISKSIPGRSGKSCRLRW 54
          + PW+  + + L+  +Q++       W  I++ +P +S + C  R+
Sbjct: 18 EEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 63

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 50.7 bits (121), Expect = 8e-09
 Identities = 8/52 (15%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 3  FNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRW 54
            + +       W+ +E   L + ++ +   +W+ +S+ +  R+   C L +
Sbjct: 9  LAKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHF 59

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 7/40 (17%), Positives = 18/40 (45%)

Query: 68  TPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNS 107
           T +E  +++ A   + + W  ++  +  RT +    H+  
Sbjct: 22  TEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLR 61

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 9  DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCN 56
          +     W+ EE    ++ + +HG RNWS I++ +  ++   C+  + N
Sbjct: 13 NLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVGSKTVSQCKNFYFN 59

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 49.6 bits (118), Expect = 2e-08
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 56  NQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKC 113
           +     +  + +T EE     +     G  W+ IAR++  +T +  KN + +  KR+ 
Sbjct: 8   SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN 65

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 45.9 bits (109), Expect = 3e-07
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 9  DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCR 51
                W+ EE E  +Q + K G R W+ ISK I  R+    +
Sbjct: 6  SGYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVK 47

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 39.4 bits (92), Expect = 6e-05
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 68  TPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTE 119
           T EE E+  +  A+FG +W  I++L+  RT   +K++     K K    L +
Sbjct: 13  TIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDK 64

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 44.4 bits (105), Expect = 9e-07
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 15 WSPEEDEALQQLVQKHGPRNWSLISKSI-PGRSGKSCRLRWCN 56
          W  +E+  L    +  G  NW+ I+  +   R+ + CR  +  
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLK 54

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 14 PWSPEEDEALQQLVQKHGP-----RNWSLISKSIPGRSGKSCRLR 53
           W+ EE + L+QL+ K+ P     R W  I+  +  R+ K    +
Sbjct: 10 LWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQ 54

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 14 PWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSC 50
           WS +E E  ++   +H  +N+ LI+  +  ++   C
Sbjct: 45 MWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAEC 80

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61

 Score = 39.3 bits (92), Expect = 6e-05
 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 5/46 (10%)

Query: 5  RREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSC 50
          R+ ++     W+  E E  +    +H P+N+ LI+  +  +S   C
Sbjct: 9  RQFMN----VWTDHEKEIFKDKFIQH-PKNFGLIASYLERKSVPDC 49

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 9/44 (20%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 14 PWSPEEDEALQQLVQKHG---PRNWSLISKSIPGRSGKSCRLRW 54
          PWS +E++A ++ +  +    P  W+ +++++ GR+ +  +  +
Sbjct: 10 PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY 53

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	278
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	100.0
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.98
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.95
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.85
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.81
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.75
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.74
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.71
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.71
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.71
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.69
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.69
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.67
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.65
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.65
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.63
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.62
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.61
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.59
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.58
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.58
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.56
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.56
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.56
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.56
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.55
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.55
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.54
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.52
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.51
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.5
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.49
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.23
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.48
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.48
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.48
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.46
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.39
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.37
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.35
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.32
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.32
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.31
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.31
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.97
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.28
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.26
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.24
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.23
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.19
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.16
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.14
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.08
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.98
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.93
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.88
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.85
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.81
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.78
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.67
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.61
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.54
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.49
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.46
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.44
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.4
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.17
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.16
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.06
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.03
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.16
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.89
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.87
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.78
2crg_A	70	Metastasis associated protein MTA3; transcription	97.73
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.66
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.62
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.56
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.47
2crg_A	70	Metastasis associated protein MTA3; transcription	97.45
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	97.0
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.92
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.83
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.79
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.73
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.51
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	95.37
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	94.83
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	93.12
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	92.26
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	90.85
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	89.93

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=1.4e-34  Score=229.65  Aligned_cols=105  Identities=59%  Similarity=1.102  Sum_probs=99.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHHcCCCccc
Q 023744            9 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWAT   88 (278)
Q Consensus         9 ~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~~G~kW~~   88 (278)
                      ++++|+||+|||++|+++|++||..+|..||..|++|+.+||++||.++|+|.+++++||+|||++|++++.+||++|..
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~   80 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE   80 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence            46899999999999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCHHHHHHHHHHHhhhhh
Q 023744           89 IARLLNGRTDNAIKNHWNSTLKRKC  113 (278)
Q Consensus        89 IA~~lpgRT~~~~knRw~~~lk~k~  113 (278)
                      ||++|||||+++|++||+.++++++
T Consensus        81 Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           81 IAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHcCCCCHHHHHHHHHHHHhccC
Confidence            9999999999999999999998863

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=100.00  E-value=2.6e-34  Score=235.99  Aligned_cols=112  Identities=53%  Similarity=0.945  Sum_probs=103.4

Q ss_pred             cccccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHH
Q 023744            2 AFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHAR   81 (278)
Q Consensus         2 ~~~~~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~   81 (278)
                      |.+..+++..+|+||+|||++|+++|++||..+|..||..|++|+.+||++||.++|+|.+++++||+|||++|++++.+
T Consensus        17 w~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~   96 (128)
T 1h8a_C           17 WQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKR   96 (128)
T ss_dssp             -----CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHH
T ss_pred             HHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHH
Confidence            56778999999999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             cCCCccccccccCCCCHHHHHHHHHHHhhhhh
Q 023744           82 FGNKWATIARLLNGRTDNAIKNHWNSTLKRKC  113 (278)
Q Consensus        82 ~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k~  113 (278)
                      ||++|+.||++|||||+++|++||+.++++++
T Consensus        97 ~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~  128 (128)
T 1h8a_C           97 LGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV  128 (128)
T ss_dssp             HCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred             HCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999988763

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=100.00  E-value=4.4e-34  Score=235.81  Aligned_cols=107  Identities=48%  Similarity=0.935  Sum_probs=103.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHHcCCCccccc
Q 023744           11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIA   90 (278)
Q Consensus        11 ~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~~G~kW~~IA   90 (278)
                      +||+||+|||++|+++|.+||..+|..||..|++|+++||++||.++|+|.+++++||+|||++|+++|.+||++|+.||
T Consensus         1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCHHHHHHHHHHHhhhhhhccc
Q 023744           91 RLLNGRTDNAIKNHWNSTLKRKCSSML  117 (278)
Q Consensus        91 ~~lpgRT~~~~knRw~~~lk~k~~~~~  117 (278)
                      ++|+|||+++|++||++++++++....
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~  107 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTNS  107 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999877554

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=5.3e-34  Score=227.73  Aligned_cols=103  Identities=35%  Similarity=0.705  Sum_probs=99.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHHcCCCcccccc
Q 023744           12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIAR   91 (278)
Q Consensus        12 kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~~G~kW~~IA~   91 (278)
                      ||+||+|||++|+++|++||..+|..||..|++|+++||++||.++|+|.+++++||+|||++|++++.+||++|..||+
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~   80 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK   80 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            68999999999999999999889999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHHHHHHHhhhhhh
Q 023744           92 LLNGRTDNAIKNHWNSTLKRKCS  114 (278)
Q Consensus        92 ~lpgRT~~~~knRw~~~lk~k~~  114 (278)
                      +|||||+++|++||+.++++...
T Consensus        81 ~l~gRt~~~~k~rw~~l~r~~~~  103 (107)
T 2k9n_A           81 FLKNRSDNNIRNRWMMIARHRAK  103 (107)
T ss_dssp             HHSSSCHHHHHHHHHHHHHHHHS
T ss_pred             HCCCCCHHHHHHHHHHHHhhHHH
Confidence            99999999999999998887644

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.98  E-value=5.1e-33  Score=228.16  Aligned_cols=106  Identities=37%  Similarity=0.780  Sum_probs=101.1

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHHcCCC
Q 023744            6 REVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNK   85 (278)
Q Consensus         6 ~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~~G~k   85 (278)
                      .....+||+||+|||++|+++|++||. +|..||+.|++|+.+||++||.++|+|.+++++||+|||++|++++.+||++
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~   83 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ   83 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence            356788999999999999999999997 8999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCHHHHHHHHHHHhhhh
Q 023744           86 WATIARLLNGRTDNAIKNHWNSTLKRK  112 (278)
Q Consensus        86 W~~IA~~lpgRT~~~~knRw~~~lk~k  112 (278)
                      |..||++|+|||+++|++||+.++++.
T Consensus        84 W~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           84 WAIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999888775

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=4.2e-32  Score=230.29  Aligned_cols=112  Identities=55%  Similarity=1.002  Sum_probs=106.5

Q ss_pred             cccccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHH
Q 023744            2 AFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHAR   81 (278)
Q Consensus         2 ~~~~~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~   81 (278)
                      |.+..++++.+|+||+|||++|+++|++||..+|..||..|++|+..||++||.++|+|.+++++||+|||++|++++.+
T Consensus        48 w~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~  127 (159)
T 1h89_C           48 WQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKR  127 (159)
T ss_dssp             HHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHH
T ss_pred             HHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHH
Confidence            45678899999999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             cCCCccccccccCCCCHHHHHHHHHHHhhhhh
Q 023744           82 FGNKWATIARLLNGRTDNAIKNHWNSTLKRKC  113 (278)
Q Consensus        82 ~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k~  113 (278)
                      ||++|+.||++|||||+++|++||+.++++++
T Consensus       128 ~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~  159 (159)
T 1h89_C          128 LGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV  159 (159)
T ss_dssp             HCSCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred             HCCCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999988763

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.95  E-value=8e-30  Score=216.22  Aligned_cols=106  Identities=31%  Similarity=0.727  Sum_probs=62.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHHcCC-Ccc
Q 023744            9 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGN-KWA   87 (278)
Q Consensus         9 ~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~~G~-kW~   87 (278)
                      ...+++||+|||++|+++|++||..+|..||..|++|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|.
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~   82 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS   82 (159)
T ss_dssp             ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence            3578999999999999999999988999999999999999999999999999999999999999999999999996 699


Q ss_pred             ccccccCCCCHHHHHHHHHHHhhhhhh
Q 023744           88 TIARLLNGRTDNAIKNHWNSTLKRKCS  114 (278)
Q Consensus        88 ~IA~~lpgRT~~~~knRw~~~lk~k~~  114 (278)
                      .||.+|+|||+.+|++||+++|...+.
T Consensus        83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~  109 (159)
T 1h89_C           83 VIAKHLKGRIGKQCRERWHNHLNPEVK  109 (159)
T ss_dssp             HHHHTSTTCCHHHHHHHHHHTTCTTSC
T ss_pred             HHHHHcCCCCHHHHHHHHHHHhCcccc
Confidence            999999999999999999999876544

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=3.7e-22  Score=147.82  Aligned_cols=66  Identities=29%  Similarity=0.581  Sum_probs=63.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCCCChHHH
Q 023744            7 EVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEED   72 (278)
Q Consensus         7 ~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED   72 (278)
                      .+.+++|+||+|||++|+++|++||..+|..||..|++|+.+||++||.++|+|.+++++||+|||
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            567899999999999999999999988999999999999999999999999999999999999998

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.81  E-value=9.3e-21  Score=155.17  Aligned_cols=77  Identities=27%  Similarity=0.670  Sum_probs=52.5

Q ss_pred             HhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHHcCC-CccccccccCCCCHHHHHHHHHHHhhhhhh
Q 023744           38 ISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGN-KWATIARLLNGRTDNAIKNHWNSTLKRKCS  114 (278)
Q Consensus        38 Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~~G~-kW~~IA~~lpgRT~~~~knRw~~~lk~k~~  114 (278)
                      ||+.|++|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|..||..|+|||..+|++||+.+|...+.
T Consensus         1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~   78 (128)
T 1h8a_C            1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVK   78 (128)
T ss_dssp             ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSC
T ss_pred             CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccc
Confidence            78999999999999999999999999999999999999999999996 699999999999999999999998876543

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.75  E-value=5.4e-19  Score=158.39  Aligned_cols=105  Identities=28%  Similarity=0.402  Sum_probs=92.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCC-----hHHHhhhCCCCCcccccccccccCCCccc-------------------
Q 023744            8 VDRIKGPWSPEEDEALQQLVQKHGPRN-----WSLISKSIPGRSGKSCRLRWCNQLSPQVE-------------------   63 (278)
Q Consensus         8 ~~~~kg~WT~EED~~L~~lV~kyG~~n-----W~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~-------------------   63 (278)
                      ....|++||+|||++|+++|.+||.++     |.+||+.|+|||+.||++||+++|.+.++                   
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~   83 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   83 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence            467789999999999999999998643     99999999999999999999999999986                   


Q ss_pred             ----------cCCCChHHHHHHHHHHHH-c--------------------------------CC----------------
Q 023744           64 ----------HRAFTPEEDEMIIRAHAR-F--------------------------------GN----------------   84 (278)
Q Consensus        64 ----------k~~WT~EED~~Ll~~v~~-~--------------------------------G~----------------   84 (278)
                                +..||.|||-.|+..+.+ |                                |.                
T Consensus        84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  163 (246)
T 1ign_A           84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ  163 (246)
T ss_dssp             CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred             eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence                      789999999999998876 1                                11                


Q ss_pred             ---------CccccccccCCCCHHHHHHHHHHHhhhh
Q 023744           85 ---------KWATIARLLNGRTDNAIKNHWNSTLKRK  112 (278)
Q Consensus        85 ---------kW~~IA~~lpgRT~~~~knRw~~~lk~k  112 (278)
                               .|..||+.+|+||.+++|+||..+++..
T Consensus       164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                     5999999999999999999999988776

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.74  E-value=7.1e-19  Score=143.50  Aligned_cols=83  Identities=22%  Similarity=0.337  Sum_probs=78.2

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhh----CCCCCcccccccccccCC-----CccccC-CCChHHHHHH
Q 023744            6 REVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKS----IPGRSGKSCRLRWCNQLS-----PQVEHR-AFTPEEDEMI   75 (278)
Q Consensus         6 ~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~----lp~Rs~kqcr~Rw~n~L~-----p~i~k~-~WT~EED~~L   75 (278)
                      ....+.+++||+|||+.|+++|++||.++|..|++.    |++||..+|++||+|+++     |.++++ +|++||+.+|
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv   90 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV   90 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence            467889999999999999999999998889999997    489999999999999997     999999 9999999999


Q ss_pred             HHHHHHcCCCccc
Q 023744           76 IRAHARFGNKWAT   88 (278)
Q Consensus        76 l~~v~~~G~kW~~   88 (278)
                      +.++..+||+|.+
T Consensus        91 ~~~h~~~gn~~~~  103 (121)
T 2juh_A           91 LAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHccchhc
Confidence            9999999999987

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.71  E-value=2.2e-18  Score=129.12  Aligned_cols=63  Identities=29%  Similarity=0.439  Sum_probs=48.3

Q ss_pred             cccccccccCCCccccCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhhhh
Q 023744           49 SCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKC  113 (278)
Q Consensus        49 qcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k~  113 (278)
                      ...-||.++|+|.+++++||+|||++|++++.+||++|+.||+.| |||+++||+||+. |++.|
T Consensus         8 ~~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~-L~~~~   70 (73)
T 2llk_A            8 SSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRL-MKDTC   70 (73)
T ss_dssp             -----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHH-CSCCC
T ss_pred             ccCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHH-HHHHc
Confidence            345689999999999999999999999999999999999999999 9999999999974 54443

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.71  E-value=6.8e-18  Score=137.88  Aligned_cols=80  Identities=23%  Similarity=0.355  Sum_probs=74.5

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhh----CCCCCcccccccccccC-----CCccccCCCChHH-HHHH
Q 023744            6 REVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKS----IPGRSGKSCRLRWCNQL-----SPQVEHRAFTPEE-DEMI   75 (278)
Q Consensus         6 ~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~----lp~Rs~kqcr~Rw~n~L-----~p~i~k~~WT~EE-D~~L   75 (278)
                      ....+.+++||+|||+.|+++|++||.++|..|++.    |++|+..+|++||+|++     +|.++++.|+++| +.+|
T Consensus        25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v  104 (122)
T 2roh_A           25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV  104 (122)
T ss_dssp             CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence            456788999999999999999999999899999986    38999999999999999     8999999999999 8999


Q ss_pred             HHHHHHcCCC
Q 023744           76 IRAHARFGNK   85 (278)
Q Consensus        76 l~~v~~~G~k   85 (278)
                      +.+++.||++
T Consensus       105 ~~~h~~~g~~  114 (122)
T 2roh_A          105 LAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhhH
Confidence            9999999985

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.71  E-value=6.8e-18  Score=121.11  Aligned_cols=57  Identities=32%  Similarity=0.687  Sum_probs=54.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccc
Q 023744            7 EVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVE   63 (278)
Q Consensus         7 ~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~   63 (278)
                      .+++.+++||+|||++|+++|++||..+|..||+.|++|+..||++||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            578899999999999999999999987899999999999999999999999999875

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.69  E-value=1e-17  Score=116.91  Aligned_cols=52  Identities=58%  Similarity=1.136  Sum_probs=49.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCc
Q 023744           10 RIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ   61 (278)
Q Consensus        10 ~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~   61 (278)
                      +++|+||+|||++|+++|.+||..+|..||+.|++|+.+||++||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            4689999999999999999999888999999999999999999999999984

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.69  E-value=8.3e-18  Score=124.06  Aligned_cols=65  Identities=25%  Similarity=0.327  Sum_probs=60.3

Q ss_pred             cccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC--CCCcccccccccccCCCccccCCCC
Q 023744            4 NRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIP--GRSGKSCRLRWCNQLSPQVEHRAFT   68 (278)
Q Consensus         4 ~~~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp--~Rs~kqcr~Rw~n~L~p~i~k~~WT   68 (278)
                      +.+.+.+.+++||+|||++|+++|++||..+|..||..|+  +|+..||++||.++|+|.+.++..+
T Consensus         2 ~~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            2 PEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             -CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            5678889999999999999999999999888999999999  9999999999999999999887764

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.67  E-value=2.1e-17  Score=115.20  Aligned_cols=52  Identities=37%  Similarity=0.824  Sum_probs=48.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCc
Q 023744           10 RIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ   61 (278)
Q Consensus        10 ~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~   61 (278)
                      +++|+||+|||++|+++|++||..+|..||+.|++|+..||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            3689999999999999999999878999999999999999999999999884

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=9.1e-17  Score=117.39  Aligned_cols=60  Identities=20%  Similarity=0.328  Sum_probs=56.5

Q ss_pred             cCCCccccCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhhhhhccc
Q 023744           57 QLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSML  117 (278)
Q Consensus        57 ~L~p~i~k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k~~~~~  117 (278)
                      +|+|.+++++||+|||++|++++.+||++|..||+ ++|||++||++||+.+|++.+....
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence            68999999999999999999999999999999999 8899999999999999999877543

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.65  E-value=1.5e-16  Score=118.30  Aligned_cols=58  Identities=26%  Similarity=0.394  Sum_probs=55.2

Q ss_pred             CCCccccCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhhhhhc
Q 023744           58 LSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS  115 (278)
Q Consensus        58 L~p~i~k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k~~~  115 (278)
                      .+|.+++++||+|||++|++++.+||++|..||++|+|||+++||+||+.+++++...
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999998665

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.63  E-value=8.2e-17  Score=117.54  Aligned_cols=54  Identities=33%  Similarity=0.505  Sum_probs=49.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC--CCCcccccccccccCCCccc
Q 023744           10 RIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIP--GRSGKSCRLRWCNQLSPQVE   63 (278)
Q Consensus        10 ~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp--~Rs~kqcr~Rw~n~L~p~i~   63 (278)
                      .+|++||+|||++|+++|++||..+|..||+.++  +|+..||++||+|+++|.++
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            5688999999999999999999989999999875  99999999999999988764

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.62  E-value=2e-16  Score=113.42  Aligned_cols=56  Identities=29%  Similarity=0.436  Sum_probs=51.8

Q ss_pred             CCccccCCCChHHHHHHHHHHHHcC-CCccccccccCCCCHHHHHHHHHHHhhhhhh
Q 023744           59 SPQVEHRAFTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLKRKCS  114 (278)
Q Consensus        59 ~p~i~k~~WT~EED~~Ll~~v~~~G-~kW~~IA~~lpgRT~~~~knRw~~~lk~k~~  114 (278)
                      +|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|++.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            4778999999999999999999999 6999999999999999999999999876543

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.61  E-value=2.6e-16  Score=113.15  Aligned_cols=54  Identities=19%  Similarity=0.370  Sum_probs=51.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCc
Q 023744            8 VDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ   61 (278)
Q Consensus         8 ~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~   61 (278)
                      +.+.+++||+|||++|+++|++||..+|..||+.|++|+.+||++||.++|.+.
T Consensus         4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence            578899999999999999999999888999999999999999999999999764

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.59  E-value=7.8e-16  Score=107.20  Aligned_cols=50  Identities=30%  Similarity=0.540  Sum_probs=46.1

Q ss_pred             cccCCCChHHHHHHHHHHHHcCC-CccccccccCCCCHHHHHHHHHHHhhh
Q 023744           62 VEHRAFTPEEDEMIIRAHARFGN-KWATIARLLNGRTDNAIKNHWNSTLKR  111 (278)
Q Consensus        62 i~k~~WT~EED~~Ll~~v~~~G~-kW~~IA~~lpgRT~~~~knRw~~~lk~  111 (278)
                      +++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||+++|++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999998 899999999999999999999999864

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1.9e-16  Score=115.70  Aligned_cols=60  Identities=25%  Similarity=0.404  Sum_probs=55.5

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCC
Q 023744            5 RREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRA   66 (278)
Q Consensus         5 ~~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~   66 (278)
                      +.+|++.+++||+|||++|+++|+.||. +|..||+ +++|+.+||++||.++|+|.++++.
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence            5789999999999999999999999996 7999999 8899999999999999998877653

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.58  E-value=5.9e-16  Score=108.48  Aligned_cols=49  Identities=31%  Similarity=0.435  Sum_probs=46.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC--CCCcccccccccccCC
Q 023744           11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIP--GRSGKSCRLRWCNQLS   59 (278)
Q Consensus        11 ~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp--~Rs~kqcr~Rw~n~L~   59 (278)
                      ++|+||+|||++|+++|++||..+|..||..|+  +|++.||++||.++++
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            479999999999999999999889999999999  9999999999999874

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.56  E-value=1.6e-15  Score=105.69  Aligned_cols=50  Identities=28%  Similarity=0.670  Sum_probs=46.6

Q ss_pred             cccCCCChHHHHHHHHHHHHcCC-CccccccccCCCCHHHHHHHHHHHhhh
Q 023744           62 VEHRAFTPEEDEMIIRAHARFGN-KWATIARLLNGRTDNAIKNHWNSTLKR  111 (278)
Q Consensus        62 i~k~~WT~EED~~Ll~~v~~~G~-kW~~IA~~lpgRT~~~~knRw~~~lk~  111 (278)
                      +++++||+|||++|+++|.+||. +|..||..|+|||+.||++||+++|+.
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999997 699999999999999999999988753

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.56  E-value=1.8e-15  Score=105.98  Aligned_cols=50  Identities=26%  Similarity=0.494  Sum_probs=46.5

Q ss_pred             ccCCCChHHHHHHHHHHHHcC-CCccccccccC--CCCHHHHHHHHHHHhhhh
Q 023744           63 EHRAFTPEEDEMIIRAHARFG-NKWATIARLLN--GRTDNAIKNHWNSTLKRK  112 (278)
Q Consensus        63 ~k~~WT~EED~~Ll~~v~~~G-~kW~~IA~~lp--gRT~~~~knRw~~~lk~k  112 (278)
                      ++++||+|||++|+++|.+|| ++|..||..|+  |||+.||++||+++++.+
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k   53 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK   53 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence            478999999999999999999 69999999999  999999999999998754

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.56  E-value=2.1e-15  Score=108.31  Aligned_cols=53  Identities=17%  Similarity=0.357  Sum_probs=49.4

Q ss_pred             CCccccCCCChHHHHHHHHHHHHcC-CCccccccccCCCCHHHHHHHHHHHhhh
Q 023744           59 SPQVEHRAFTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLKR  111 (278)
Q Consensus        59 ~p~i~k~~WT~EED~~Ll~~v~~~G-~kW~~IA~~lpgRT~~~~knRw~~~lk~  111 (278)
                      .+.+.+++||+|||++|+++|.+|| ++|..||++|+|||+.||++||+++|..
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            3578899999999999999999999 7999999999999999999999988854

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.56  E-value=2.8e-15  Score=110.43  Aligned_cols=60  Identities=23%  Similarity=0.378  Sum_probs=54.5

Q ss_pred             cCCCccccCCCChHHHHHHHHHHHHcC-CCccccccccC--CCCHHHHHHHHHHHhhhhhhcc
Q 023744           57 QLSPQVEHRAFTPEEDEMIIRAHARFG-NKWATIARLLN--GRTDNAIKNHWNSTLKRKCSSM  116 (278)
Q Consensus        57 ~L~p~i~k~~WT~EED~~Ll~~v~~~G-~kW~~IA~~lp--gRT~~~~knRw~~~lk~k~~~~  116 (278)
                      ..++..++++||+|||++|+++|.+|| ++|..||..|+  |||+.||++||+++|+..+...
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~   65 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS   65 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence            345677899999999999999999999 69999999999  9999999999999999886543

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.55  E-value=1.8e-15  Score=108.12  Aligned_cols=52  Identities=19%  Similarity=0.424  Sum_probs=48.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC-CCCcccccccccccC
Q 023744            7 EVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQL   58 (278)
Q Consensus         7 ~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp-~Rs~kqcr~Rw~n~L   58 (278)
                      ...+.+++||+|||++|+++|++||..+|..||++|+ +|+.+||++||.+++
T Consensus         4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            3456789999999999999999999889999999999 999999999998875

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=2.3e-15  Score=111.15  Aligned_cols=57  Identities=25%  Similarity=0.478  Sum_probs=52.8

Q ss_pred             CCccccCCCChHHHHHHHHHHHHcC-CCccccccccCCCCHHHHHHHHHHHhhhhhhc
Q 023744           59 SPQVEHRAFTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLKRKCSS  115 (278)
Q Consensus        59 ~p~i~k~~WT~EED~~Ll~~v~~~G-~kW~~IA~~lpgRT~~~~knRw~~~lk~k~~~  115 (278)
                      .|.+++++||+|||++|+++|.+|| ++|..||.+|+|||..||++||+++|+..+..
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~   61 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK   61 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccC
Confidence            4678999999999999999999999 79999999999999999999999999876654

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1.4e-15  Score=113.57  Aligned_cols=61  Identities=21%  Similarity=0.290  Sum_probs=55.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC-----CChHHHhhhCCCCCcccccccccccCCCccccCCC
Q 023744            7 EVDRIKGPWSPEEDEALQQLVQKHGP-----RNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAF   67 (278)
Q Consensus         7 ~~~~~kg~WT~EED~~L~~lV~kyG~-----~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~W   67 (278)
                      .++..+++||+|||++|+++|++||.     .+|..||.+|++|+..||++||.++|.+.++.+..
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~   68 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIP   68 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            57889999999999999999999996     68999999999999999999999999887776543

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=5.8e-15  Score=110.25  Aligned_cols=56  Identities=18%  Similarity=0.302  Sum_probs=52.1

Q ss_pred             CCccccCCCChHHHHHHHHHHHHcC------CCccccccccCCCCHHHHHHHHHHHhhhhhh
Q 023744           59 SPQVEHRAFTPEEDEMIIRAHARFG------NKWATIARLLNGRTDNAIKNHWNSTLKRKCS  114 (278)
Q Consensus        59 ~p~i~k~~WT~EED~~Ll~~v~~~G------~kW~~IA~~lpgRT~~~~knRw~~~lk~k~~  114 (278)
                      +|.+.+++||+|||++|++++.+||      ++|..||.+|+|||..||++||+++|++...
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k   64 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK   64 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            5788999999999999999999999      7899999999999999999999999987654

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.51  E-value=1e-14  Score=106.42  Aligned_cols=52  Identities=25%  Similarity=0.508  Sum_probs=46.9

Q ss_pred             cccCCCChHHHHHHHHHHHHcC-CCccccccccC--CCCHHHHHHHHHHHhhhhh
Q 023744           62 VEHRAFTPEEDEMIIRAHARFG-NKWATIARLLN--GRTDNAIKNHWNSTLKRKC  113 (278)
Q Consensus        62 i~k~~WT~EED~~Ll~~v~~~G-~kW~~IA~~lp--gRT~~~~knRw~~~lk~k~  113 (278)
                      .++++||+|||++|+++|.+|| ++|..||+.++  |||+.||++||++++|..+
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl   63 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   63 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence            4688999999999999999999 58999999865  9999999999999988754

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.50  E-value=8.6e-15  Score=109.57  Aligned_cols=57  Identities=30%  Similarity=0.447  Sum_probs=47.0

Q ss_pred             cccccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCc
Q 023744            2 AFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ   61 (278)
Q Consensus         2 ~~~~~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~   61 (278)
                      +.+..+|++.+|+||+|||++|+++|++||.+ |..||+.| +|+..+|++||.. |...
T Consensus        13 ~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l-gRt~~q~knRw~~-L~~~   69 (73)
T 2llk_A           13 NLYFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL-GRSASSVKDRCRL-MKDT   69 (73)
T ss_dssp             ------CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH-TSCHHHHHHHHHH-CSCC
T ss_pred             eeeecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh-CCCHHHHHHHHHH-HHHH
Confidence            56889999999999999999999999999966 99999999 9999999999964 4433

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.49  E-value=4.5e-15  Score=110.25  Aligned_cols=58  Identities=24%  Similarity=0.298  Sum_probs=53.4

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCcccc
Q 023744            6 REVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEH   64 (278)
Q Consensus         6 ~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k   64 (278)
                      ..+++.+++||+|||++|+++|++||. +|..||++|++|+..||+.||.++|++.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            468899999999999999999999996 7999999999999999999999998776655

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.23  E-value=2.2e-15  Score=116.61  Aligned_cols=58  Identities=22%  Similarity=0.318  Sum_probs=54.0

Q ss_pred             cCCCccccCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhhhhh
Q 023744           57 QLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCS  114 (278)
Q Consensus        57 ~L~p~i~k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k~~  114 (278)
                      .+.|.+++++||+|||++|++++.+||++|..||.+|+|||+++|++||+.++++...
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l   66 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNL   66 (89)
Confidence            4678899999999999999999999999999999999999999999999999987543

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.48  E-value=3.5e-14  Score=108.72  Aligned_cols=69  Identities=23%  Similarity=0.355  Sum_probs=61.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHhhh----CCCCCcccccccccccC-----CCccccC-CCChHHHHHHHHHHHH
Q 023744           13 GPWSPEEDEALQQLVQKHGPRNWSLISKS----IPGRSGKSCRLRWCNQL-----SPQVEHR-AFTPEEDEMIIRAHAR   81 (278)
Q Consensus        13 g~WT~EED~~L~~lV~kyG~~nW~~Ia~~----lp~Rs~kqcr~Rw~n~L-----~p~i~k~-~WT~EED~~Ll~~v~~   81 (278)
                      ++||+|||++|+++|++||.++|..|++.    |++||..+|++||+|++     +|.++++ +..++....++.+++.
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            47999999999999999999899999995    89999999999999987     6876665 7777888899999875

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.48  E-value=1.1e-14  Score=119.64  Aligned_cols=87  Identities=30%  Similarity=0.518  Sum_probs=64.8

Q ss_pred             cccccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHH
Q 023744            2 AFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHAR   81 (278)
Q Consensus         2 ~~~~~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~   81 (278)
                      |.++.++++.+|+||+|||++|+++|.+||. +|..||+.|++|+..+|+.||+++|++.+..++|+.+-    +.....
T Consensus        44 w~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~  118 (131)
T 3zqc_A           44 WFNHLDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRS  118 (131)
T ss_dssp             HHHHTSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC
T ss_pred             HhhccCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhh
Confidence            4567899999999999999999999999995 59999999999999999999999999999999988763    111122


Q ss_pred             cCCCcccccccc
Q 023744           82 FGNKWATIARLL   93 (278)
Q Consensus        82 ~G~kW~~IA~~l   93 (278)
                      .+.+|+.|++.|
T Consensus       119 kk~~~~~i~k~~  130 (131)
T 3zqc_A          119 KKRKAADVPKKL  130 (131)
T ss_dssp             ------------
T ss_pred             hhhhhhhcchhc
Confidence            345688887765

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.48  E-value=2.7e-14  Score=102.00  Aligned_cols=49  Identities=24%  Similarity=0.477  Sum_probs=45.8

Q ss_pred             ccccCCCChHHHHHHHHHHHHcC-CCccccccccC-CCCHHHHHHHHHHHh
Q 023744           61 QVEHRAFTPEEDEMIIRAHARFG-NKWATIARLLN-GRTDNAIKNHWNSTL  109 (278)
Q Consensus        61 ~i~k~~WT~EED~~Ll~~v~~~G-~kW~~IA~~lp-gRT~~~~knRw~~~l  109 (278)
                      .+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.||++||++++
T Consensus         6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            45678999999999999999999 89999999999 999999999998775

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.46  E-value=3.2e-14  Score=113.35  Aligned_cols=79  Identities=28%  Similarity=0.387  Sum_probs=69.8

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhC----CCCCcccccccccccC-----CCccccCCCChHHHHH-H
Q 023744            6 REVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSI----PGRSGKSCRLRWCNQL-----SPQVEHRAFTPEEDEM-I   75 (278)
Q Consensus         6 ~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~l----p~Rs~kqcr~Rw~n~L-----~p~i~k~~WT~EED~~-L   75 (278)
                      ....+.+++||+|||++|+++|++||.++|..|++.+    ++||..+|++||+|++     +|.++++.-+++|--. +
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv   86 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV   86 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence            4567889999999999999999999998999999965    8999999999999988     7999999888888775 8


Q ss_pred             HHHHHHcCC
Q 023744           76 IRAHARFGN   84 (278)
Q Consensus        76 l~~v~~~G~   84 (278)
                      +++++.+|+
T Consensus        87 ~~~~~~~~~   95 (105)
T 2aje_A           87 LNAHGYWTQ   95 (105)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            899888774

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.39  E-value=2.3e-13  Score=103.23  Aligned_cols=52  Identities=15%  Similarity=0.342  Sum_probs=48.2

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccC
Q 023744            6 REVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQL   58 (278)
Q Consensus         6 ~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L   58 (278)
                      +.....+++||+|||++|+++|++|| .+|..||++|++|+..||++||.++.
T Consensus        12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~~   63 (79)
T 2yus_A           12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRLP   63 (79)
T ss_dssp             CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTSC
T ss_pred             ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            45667789999999999999999999 78999999999999999999999984

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.37  E-value=3e-13  Score=101.12  Aligned_cols=52  Identities=12%  Similarity=0.307  Sum_probs=47.5

Q ss_pred             CccccCCCChHHHHHHHHHHHHcC----CCccccccccCCCCHHHHHHHHHHHhhh
Q 023744           60 PQVEHRAFTPEEDEMIIRAHARFG----NKWATIARLLNGRTDNAIKNHWNSTLKR  111 (278)
Q Consensus        60 p~i~k~~WT~EED~~Ll~~v~~~G----~kW~~IA~~lpgRT~~~~knRw~~~lk~  111 (278)
                      +.+.+++||.|||.+|++++.+||    ++|.+||++|||||.++|++||+.+++.
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d   69 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG   69 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            456789999999999999999999    6899999999999999999999887653

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.35  E-value=2.9e-13  Score=106.70  Aligned_cols=58  Identities=26%  Similarity=0.532  Sum_probs=52.7

Q ss_pred             cccccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCC
Q 023744            2 AFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP   60 (278)
Q Consensus         2 ~~~~~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p   60 (278)
                      |.+..++++.+|+||+|||++|+++|++||. +|..||+.||+|+..+|+.||..+++.
T Consensus        46 w~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~gRt~~~~k~rw~~~~~~  103 (105)
T 1gv2_A           46 WHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGRTDNAIKNHWNSTMRR  103 (105)
T ss_dssp             HHHTTCCCCCCCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTTCCHHHHHHHHHHHTC-
T ss_pred             HHhccCCcccccCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            4467889999999999999999999999995 699999999999999999999988764

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.32  E-value=5.3e-13  Score=101.17  Aligned_cols=48  Identities=17%  Similarity=0.369  Sum_probs=44.4

Q ss_pred             ccccCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHH
Q 023744           61 QVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNST  108 (278)
Q Consensus        61 ~i~k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~  108 (278)
                      ...+++||+|||++|++++.+||++|.+||++|++||..||++||+.+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456789999999999999999999999999999999999999999643

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.32  E-value=2.2e-13  Score=108.15  Aligned_cols=58  Identities=36%  Similarity=0.511  Sum_probs=52.9

Q ss_pred             cccccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCC
Q 023744            2 AFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP   60 (278)
Q Consensus         2 ~~~~~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p   60 (278)
                      |.+..++++.+|+||+|||++|+++|.+||. +|..||+.||+|+..+|+.||..+++.
T Consensus        43 w~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~gRt~~~~k~rw~~l~r~  100 (107)
T 2k9n_A           43 WNNYINPALRTDPWSPEEDMLLDQKYAEYGP-KWNKISKFLKNRSDNNIRNRWMMIARH  100 (107)
T ss_dssp             HHHHSSSCCTTCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHcccccccccCHHHHHHHHHHHHHhCc-CHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence            4567889999999999999999999999996 699999999999999999999887654

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.31  E-value=4.4e-13  Score=100.25  Aligned_cols=54  Identities=20%  Similarity=0.497  Sum_probs=48.5

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhC---CCChHHHhhhCCCCCcccccccccccCC
Q 023744            6 REVDRIKGPWSPEEDEALQQLVQKHG---PRNWSLISKSIPGRSGKSCRLRWCNQLS   59 (278)
Q Consensus         6 ~~~~~~kg~WT~EED~~L~~lV~kyG---~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~   59 (278)
                      ..+...+++||+|||++|+.+|++||   +.+|..||++||||+.+||++||.+++.
T Consensus        12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            45677889999999999999999999   3569999999999999999999987653

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.31  E-value=1.3e-12  Score=106.63  Aligned_cols=57  Identities=33%  Similarity=0.591  Sum_probs=51.8

Q ss_pred             CCccccCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhhhhhc
Q 023744           59 SPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS  115 (278)
Q Consensus        59 ~p~i~k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k~~~  115 (278)
                      .+..++++||+|||++|+++|.+||.+|..||..|+||+..||++||+++|...+..
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~   62 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISH   62 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCC
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccccccc
Confidence            456789999999999999999999999999999999999999999999999776543

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.97  E-value=2.1e-13  Score=105.44  Aligned_cols=53  Identities=21%  Similarity=0.382  Sum_probs=49.8

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCC
Q 023744            6 REVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLS   59 (278)
Q Consensus         6 ~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~   59 (278)
                      ..+.+.+|+||+|||++|+++|.+||. +|..||..|++||..||++||.++|.
T Consensus        10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lr   62 (89)
T 2ltp_A           10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKK   62 (89)
Confidence            467889999999999999999999996 69999999999999999999999885

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.28  E-value=2.9e-12  Score=92.66  Aligned_cols=51  Identities=20%  Similarity=0.433  Sum_probs=46.8

Q ss_pred             cccCCCChHHHHHHHHHHHHcCCCccccc---cccCCCCHHHHHHHHHHHhhhh
Q 023744           62 VEHRAFTPEEDEMIIRAHARFGNKWATIA---RLLNGRTDNAIKNHWNSTLKRK  112 (278)
Q Consensus        62 i~k~~WT~EED~~Ll~~v~~~G~kW~~IA---~~lpgRT~~~~knRw~~~lk~k  112 (278)
                      .++.+||+|||+.|++.|.+||.+|+.|+   .++++||..+||+||+.+.|+.
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~   59 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP   59 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence            36789999999999999999999999999   5789999999999998887754

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.26  E-value=5.1e-12  Score=96.68  Aligned_cols=50  Identities=22%  Similarity=0.484  Sum_probs=45.8

Q ss_pred             CCCChHHHHHHHHHHHHcCC-Cccccccc----cCCCCHHHHHHHHHHHhhhhhh
Q 023744           65 RAFTPEEDEMIIRAHARFGN-KWATIARL----LNGRTDNAIKNHWNSTLKRKCS  114 (278)
Q Consensus        65 ~~WT~EED~~Ll~~v~~~G~-kW~~IA~~----lpgRT~~~~knRw~~~lk~k~~  114 (278)
                      ++||+|||+.|+++|.+||. +|+.|++.    |+|||+++||+||+++++....
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~   55 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI   55 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccC
Confidence            47999999999999999997 99999985    8999999999999999986643

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.24  E-value=3.1e-12  Score=114.68  Aligned_cols=55  Identities=24%  Similarity=0.458  Sum_probs=49.0

Q ss_pred             CccccCCCChHHHHHHHHHHHHcCCC------ccccccccCCCCHHHHHHHHHHHhhhhhh
Q 023744           60 PQVEHRAFTPEEDEMIIRAHARFGNK------WATIARLLNGRTDNAIKNHWNSTLKRKCS  114 (278)
Q Consensus        60 p~i~k~~WT~EED~~Ll~~v~~~G~k------W~~IA~~lpgRT~~~~knRw~~~lk~k~~  114 (278)
                      +.+++++||+|||++|+++|.+||++      |..||++|||||+++||+||+.+|++++.
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln   64 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE   64 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence            35688999999999999999999985      99999999999999999999999999876

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.23  E-value=9.9e-12  Score=98.97  Aligned_cols=56  Identities=20%  Similarity=0.421  Sum_probs=49.4

Q ss_pred             CCccccCCCChHHHHHHHHHHHHcCC-Ccccccccc----CCCCHHHHHHHHHHHhhhhhh
Q 023744           59 SPQVEHRAFTPEEDEMIIRAHARFGN-KWATIARLL----NGRTDNAIKNHWNSTLKRKCS  114 (278)
Q Consensus        59 ~p~i~k~~WT~EED~~Ll~~v~~~G~-kW~~IA~~l----pgRT~~~~knRw~~~lk~k~~  114 (278)
                      ....++++||.|||+.|+++|.+||. +|+.|++.+    +|||+.+||+||+++++....
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~   68 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKI   68 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTC
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccC
Confidence            34568899999999999999999997 999999865    899999999999999986543

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.19  E-value=7.2e-12  Score=102.09  Aligned_cols=57  Identities=23%  Similarity=0.465  Sum_probs=51.1

Q ss_pred             cCCCccccCCCChHHHHHHHHHHHHcCC-Cccccccc----cCCCCHHHHHHHHHHHhhhhh
Q 023744           57 QLSPQVEHRAFTPEEDEMIIRAHARFGN-KWATIARL----LNGRTDNAIKNHWNSTLKRKC  113 (278)
Q Consensus        57 ~L~p~i~k~~WT~EED~~Ll~~v~~~G~-kW~~IA~~----lpgRT~~~~knRw~~~lk~k~  113 (278)
                      -+.+..++++||.|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+++++...
T Consensus        10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~   71 (121)
T 2juh_A           10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   71 (121)
T ss_dssp             CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence            3566778999999999999999999997 99999987    489999999999999998543

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.16  E-value=2e-11  Score=95.27  Aligned_cols=50  Identities=28%  Similarity=0.595  Sum_probs=45.4

Q ss_pred             ccCCCChHHHHHHHHHHHHcC----CCccccccccCCCCHHHHHHHHHHHhhhh
Q 023744           63 EHRAFTPEEDEMIIRAHARFG----NKWATIARLLNGRTDNAIKNHWNSTLKRK  112 (278)
Q Consensus        63 ~k~~WT~EED~~Ll~~v~~~G----~kW~~IA~~lpgRT~~~~knRw~~~lk~k  112 (278)
                      .+++||.|||.+|++++++||    ++|.+||+.|||||.++|++||+.++...
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999999996    67999999999999999999999887664

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.14  E-value=2.8e-11  Score=98.69  Aligned_cols=55  Identities=22%  Similarity=0.466  Sum_probs=48.8

Q ss_pred             CCccccCCCChHHHHHHHHHHHHcCC-Cccccccc----cCCCCHHHHHHHHHHHhhhhh
Q 023744           59 SPQVEHRAFTPEEDEMIIRAHARFGN-KWATIARL----LNGRTDNAIKNHWNSTLKRKC  113 (278)
Q Consensus        59 ~p~i~k~~WT~EED~~Ll~~v~~~G~-kW~~IA~~----lpgRT~~~~knRw~~~lk~k~  113 (278)
                      ....++++||.|||+.|+++|.+||. +|+.|++.    |+|||..+||+||+++++...
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~   85 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS   85 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            34457899999999999999999997 99999986    389999999999999997653

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.08  E-value=2.9e-11  Score=94.32  Aligned_cols=48  Identities=19%  Similarity=0.526  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---CCChHHHhhhCCCCCcccccccccccC
Q 023744           11 IKGPWSPEEDEALQQLVQKHG---PRNWSLISKSIPGRSGKSCRLRWCNQL   58 (278)
Q Consensus        11 ~kg~WT~EED~~L~~lV~kyG---~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L   58 (278)
                      .+++||+|||++|++++.+|+   +..|..||+.|||||.++|++||.+++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            467999999999999999997   456999999999999999999998764

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.98  E-value=4.2e-10  Score=80.93  Aligned_cols=48  Identities=17%  Similarity=0.135  Sum_probs=44.1

Q ss_pred             ccCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhh
Q 023744           63 EHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLK  110 (278)
Q Consensus        63 ~k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk  110 (278)
                      ...+||+||++++++++.+||.+|..||.+||+||..+|..+|+...|
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            457999999999999999999999999999999999999999976543

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.93  E-value=4.2e-10  Score=81.33  Aligned_cols=50  Identities=20%  Similarity=0.252  Sum_probs=44.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCChHHHh---hhCCCCCcccccccccccCC
Q 023744            9 DRIKGPWSPEEDEALQQLVQKHGPRNWSLIS---KSIPGRSGKSCRLRWCNQLS   59 (278)
Q Consensus         9 ~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia---~~lp~Rs~kqcr~Rw~n~L~   59 (278)
                      .+.+++||+|||+.|++.|++||. +|..|+   .++++|+...+.+||++..+
T Consensus         5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence            357889999999999999999996 899999   57799999999999988754

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.88  E-value=1e-09  Score=85.44  Aligned_cols=64  Identities=14%  Similarity=0.199  Sum_probs=56.9

Q ss_pred             ccccccccccCCCccccCCCChHHHHHHHHHHHHcCCCcccccccc-----CCCCHHHHHHHHHHHhhhhhhc
Q 023744           48 KSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLL-----NGRTDNAIKNHWNSTLKRKCSS  115 (278)
Q Consensus        48 kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~~G~kW~~IA~~l-----pgRT~~~~knRw~~~lk~k~~~  115 (278)
                      .=+.++|.++|.+    .+||.||+..|++++.+||.+|..|+.++     ++||..++|+||+.+.++.+..
T Consensus        18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~   86 (93)
T 3hm5_A           18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV   86 (93)
T ss_dssp             CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            4567899999965    89999999999999999999999999998     5899999999999888776543

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.85  E-value=1.6e-09  Score=77.79  Aligned_cols=49  Identities=20%  Similarity=0.402  Sum_probs=44.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccC
Q 023744            9 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQL   58 (278)
Q Consensus         9 ~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L   58 (278)
                      ....++||+||++++.+++.+|| ++|..||.+|++|+..+|.++|....
T Consensus         9 r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A            9 RQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             cccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            45668999999999999999999 67999999999999999999996543

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.81  E-value=2.4e-09  Score=95.31  Aligned_cols=49  Identities=18%  Similarity=0.400  Sum_probs=45.8

Q ss_pred             ccCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhh
Q 023744           63 EHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR  111 (278)
Q Consensus        63 ~k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~  111 (278)
                      ...+||+||+.++++++.+||++|..||+.|++||..||+++|+.+.++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999999999877765

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.78  E-value=4.4e-09  Score=78.24  Aligned_cols=50  Identities=20%  Similarity=0.355  Sum_probs=44.5

Q ss_pred             ccccCCCChHHHHHHHHHHHHcC----CCccccccccCCCCHHHHHHHHHHHhhh
Q 023744           61 QVEHRAFTPEEDEMIIRAHARFG----NKWATIARLLNGRTDNAIKNHWNSTLKR  111 (278)
Q Consensus        61 ~i~k~~WT~EED~~Ll~~v~~~G----~kW~~IA~~lpgRT~~~~knRw~~~lk~  111 (278)
                      ..+.+.||.|||.+|.+++++|+    ++|.+||.++ |||..+|++||+.+.+.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            34568999999999999999997    5699999998 99999999999877654

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.67  E-value=7.8e-09  Score=101.12  Aligned_cols=47  Identities=19%  Similarity=0.429  Sum_probs=42.9

Q ss_pred             CCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhh
Q 023744           65 RAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR  111 (278)
Q Consensus        65 ~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~  111 (278)
                      ..||.||..++++++.+||.+|..||+.+.+||..||+++|..+.++
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr  427 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  427 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999754443

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.61  E-value=1.7e-08  Score=75.03  Aligned_cols=49  Identities=20%  Similarity=0.317  Sum_probs=43.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC---CCChHHHhhhCCCCCcccccccccccC
Q 023744            9 DRIKGPWSPEEDEALQQLVQKHG---PRNWSLISKSIPGRSGKSCRLRWCNQL   58 (278)
Q Consensus         9 ~~~kg~WT~EED~~L~~lV~kyG---~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L   58 (278)
                      ....+.||.|||++|.+++.+|+   +..|..||..+ +|+..+|+.||+.+.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~   56 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   56 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            44567899999999999999997   35699999998 999999999997654

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.54  E-value=2.6e-08  Score=71.26  Aligned_cols=48  Identities=23%  Similarity=0.399  Sum_probs=43.2

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCCChHHHhh-hCCCCCcccccccccccCC
Q 023744           12 KGPWSPEEDEALQQLVQKH--------GPRNWSLISK-SIPGRSGKSCRLRWCNQLS   59 (278)
Q Consensus        12 kg~WT~EED~~L~~lV~ky--------G~~nW~~Ia~-~lp~Rs~kqcr~Rw~n~L~   59 (278)
                      |.+||+|||++|.++|.+|        |..-|..+++ .+++++-.+||+||.++|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        4445999999 8999999999999998874

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.49  E-value=6.7e-08  Score=69.13  Aligned_cols=47  Identities=23%  Similarity=0.424  Sum_probs=42.5

Q ss_pred             cCCCChHHHHHHHHHHHHc--------CCC-cccccc-ccCCCCHHHHHHHHHHHhh
Q 023744           64 HRAFTPEEDEMIIRAHARF--------GNK-WATIAR-LLNGRTDNAIKNHWNSTLK  110 (278)
Q Consensus        64 k~~WT~EED~~Ll~~v~~~--------G~k-W~~IA~-~lpgRT~~~~knRw~~~lk  110 (278)
                      +.+||.|||..|++.|++|        |++ |..+++ .++++|..++|+||.+.|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        554 999999 8999999999999988764

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.46  E-value=8.9e-08  Score=71.38  Aligned_cols=48  Identities=13%  Similarity=0.278  Sum_probs=42.9

Q ss_pred             cCCCChHHHHHHHHHHHHcCC----CccccccccCCCCHHHHHHHHHHHhhh
Q 023744           64 HRAFTPEEDEMIIRAHARFGN----KWATIARLLNGRTDNAIKNHWNSTLKR  111 (278)
Q Consensus        64 k~~WT~EED~~Ll~~v~~~G~----kW~~IA~~lpgRT~~~~knRw~~~lk~  111 (278)
                      ...||.+|+.+|.++++.|+.    +|.+||..++|||..+|+.||..+++.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            468999999999999999984    599999999999999999999766443

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.44  E-value=9e-08  Score=85.21  Aligned_cols=50  Identities=24%  Similarity=0.346  Sum_probs=45.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCC
Q 023744            9 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLS   59 (278)
Q Consensus         9 ~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~   59 (278)
                      .....+||+||++++++++.+|| ++|..||+.|++||..||+.+|.++.+
T Consensus       130 ~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          130 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            35677999999999999999999 689999999999999999999987763

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.40  E-value=1.8e-07  Score=69.71  Aligned_cols=47  Identities=17%  Similarity=0.366  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CChHHHhhhCCCCCcccccccccccCC
Q 023744           13 GPWSPEEDEALQQLVQKHGP---RNWSLISKSIPGRSGKSCRLRWCNQLS   59 (278)
Q Consensus        13 g~WT~EED~~L~~lV~kyG~---~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~   59 (278)
                      ..||.+|+++|..++..|+.   .+|..||..|++|+..+|+.||...+.
T Consensus         9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            57999999999999999974   469999999999999999999987764

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.17  E-value=2.3e-06  Score=61.71  Aligned_cols=49  Identities=12%  Similarity=0.290  Sum_probs=44.5

Q ss_pred             CccccCCCChHHHHHHHHHHHHcCCCcccccc-ccCCCCHHHHHHHHHHH
Q 023744           60 PQVEHRAFTPEEDEMIIRAHARFGNKWATIAR-LLNGRTDNAIKNHWNST  108 (278)
Q Consensus        60 p~i~k~~WT~EED~~Ll~~v~~~G~kW~~IA~-~lpgRT~~~~knRw~~~  108 (278)
                      |.+....||+||..+..+++.+||.+|..|++ .|++||..+|...|+..
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence            56677899999999999999999999999998 69999999999988643

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.16  E-value=3.1e-06  Score=78.56  Aligned_cols=99  Identities=14%  Similarity=0.266  Sum_probs=79.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccc-------cccccC---------------------------
Q 023744           13 GPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRL-------RWCNQL---------------------------   58 (278)
Q Consensus        13 g~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~-------Rw~n~L---------------------------   58 (278)
                      +.||..|...++.++.+||..+|..||..|++++...++.       ||..+-                           
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~  190 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD  190 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999989999999999999876643       221100                           


Q ss_pred             ----------------CCccccCCCChHHHHHHHHHHHHcCC----Ccccccc------------ccCCCCHHHHHHHHH
Q 023744           59 ----------------SPQVEHRAFTPEEDEMIIRAHARFGN----KWATIAR------------LLNGRTDNAIKNHWN  106 (278)
Q Consensus        59 ----------------~p~i~k~~WT~EED~~Ll~~v~~~G~----kW~~IA~------------~lpgRT~~~~knRw~  106 (278)
                                      .+..+...||+|||..||-++.+||-    .|..|..            ++..||+.+|..|-+
T Consensus       191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~  270 (304)
T 1ofc_X          191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN  270 (304)
T ss_dssp             HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred             HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence                            12224568999999999999999996    4999962            456899999999998


Q ss_pred             HHhhh
Q 023744          107 STLKR  111 (278)
Q Consensus       107 ~~lk~  111 (278)
                      .+++-
T Consensus       271 tLi~~  275 (304)
T 1ofc_X          271 TLITL  275 (304)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88854

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.06  E-value=1.3e-06  Score=64.91  Aligned_cols=43  Identities=23%  Similarity=0.448  Sum_probs=38.7

Q ss_pred             cCCCChHHHHHHHHHHHHcCC----CccccccccCCCCHHHHHHHHH
Q 023744           64 HRAFTPEEDEMIIRAHARFGN----KWATIARLLNGRTDNAIKNHWN  106 (278)
Q Consensus        64 k~~WT~EED~~Ll~~v~~~G~----kW~~IA~~lpgRT~~~~knRw~  106 (278)
                      ...||.||+.+|..+++.|..    +|.+||..|||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999985    6999999999999999999984

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.03  E-value=3.7e-06  Score=64.83  Aligned_cols=49  Identities=16%  Similarity=0.289  Sum_probs=43.9

Q ss_pred             cCCCChHHHHHHHHHHHHcCC---CccccccccCCCCHHHHHHHHHHHhhhh
Q 023744           64 HRAFTPEEDEMIIRAHARFGN---KWATIARLLNGRTDNAIKNHWNSTLKRK  112 (278)
Q Consensus        64 k~~WT~EED~~Ll~~v~~~G~---kW~~IA~~lpgRT~~~~knRw~~~lk~k  112 (278)
                      ---||.|||..||....+-|.   .|+.||..|.+|+.++|++||+.+++-.
T Consensus        33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf   84 (95)
T 1ug2_A           33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            347999999999999999997   6999999999999999999998877543

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.16  E-value=1.3e-06  Score=63.90  Aligned_cols=44  Identities=20%  Similarity=0.406  Sum_probs=40.8

Q ss_pred             CCChHHHHHHHHHHHHcCC---CccccccccCCCCHHHHHHHHHHHhh
Q 023744           66 AFTPEEDEMIIRAHARFGN---KWATIARLLNGRTDNAIKNHWNSTLK  110 (278)
Q Consensus        66 ~WT~EED~~Ll~~v~~~G~---kW~~IA~~lpgRT~~~~knRw~~~lk  110 (278)
                      .||.|||..||..+.+-|.   .|+.||..| +|+++||++||..+++
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            6999999999999999997   699999999 9999999999987664

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.89  E-value=2e-06  Score=63.91  Aligned_cols=44  Identities=16%  Similarity=0.410  Sum_probs=38.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC---CChHHHhhhCCCCCccccccccc
Q 023744           12 KGPWSPEEDEALQQLVQKHGP---RNWSLISKSIPGRSGKSCRLRWC   55 (278)
Q Consensus        12 kg~WT~EED~~L~~lV~kyG~---~nW~~Ia~~lp~Rs~kqcr~Rw~   55 (278)
                      ...||.||+++|..++.+|..   ..|.+||..||||+..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            347999999999999999964   25999999999999999999994

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.87  E-value=1.2e-05  Score=57.90  Aligned_cols=49  Identities=16%  Similarity=0.275  Sum_probs=43.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhh-hCCCCCcccccccccc
Q 023744            7 EVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISK-SIPGRSGKSCRLRWCN   56 (278)
Q Consensus         7 ~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~-~lp~Rs~kqcr~Rw~n   56 (278)
                      .|......||+||-++..+.+.+|| ++|..|++ .|++|+..+|...|..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            4566778999999999999999999 58999999 5899999999877643

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.78  E-value=2.6e-05  Score=60.46  Aligned_cols=51  Identities=16%  Similarity=0.295  Sum_probs=45.9

Q ss_pred             cCCCChHHHHHHHHHHHHcCCCccccccccC-----CCCHHHHHHHHHHHhhhhhh
Q 023744           64 HRAFTPEEDEMIIRAHARFGNKWATIARLLN-----GRTDNAIKNHWNSTLKRKCS  114 (278)
Q Consensus        64 k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lp-----gRT~~~~knRw~~~lk~k~~  114 (278)
                      ...||.||...|++++.+|+-+|..|+..+.     .||..++|+||+.+.++.+.
T Consensus        30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~   85 (93)
T 4iej_A           30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN   85 (93)
T ss_dssp             BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999998763     79999999999998877654

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.73  E-value=3.5e-05  Score=56.62  Aligned_cols=43  Identities=14%  Similarity=0.289  Sum_probs=40.6

Q ss_pred             cCCCChHHHHHHHHHHHHcCCCcccccc-ccCCCCHHHHHHHHH
Q 023744           64 HRAFTPEEDEMIIRAHARFGNKWATIAR-LLNGRTDNAIKNHWN  106 (278)
Q Consensus        64 k~~WT~EED~~Ll~~v~~~G~kW~~IA~-~lpgRT~~~~knRw~  106 (278)
                      ...||+||..+..+++.+||.+|..|++ .|++||..+|...|+
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY   51 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY   51 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence            4689999999999999999999999999 699999999999987

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.66  E-value=3.8e-05  Score=59.57  Aligned_cols=45  Identities=16%  Similarity=0.172  Sum_probs=41.9

Q ss_pred             cCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHH
Q 023744           64 HRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNST  108 (278)
Q Consensus        64 k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~  108 (278)
                      ...||+||.++..++...||.+|..|+..|++||..+|-..|+..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence            468999999999999999999999999999999999999988644

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.62  E-value=3.4e-05  Score=59.90  Aligned_cols=46  Identities=20%  Similarity=0.359  Sum_probs=41.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHhhhC-----CCCCcccccccccccC
Q 023744           12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSI-----PGRSGKSCRLRWCNQL   58 (278)
Q Consensus        12 kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~l-----p~Rs~kqcr~Rw~n~L   58 (278)
                      ..+||.||++.|.+|+++|+.+ |..|+..+     ++|+...+++||..+.
T Consensus        30 ~~~WTkEETd~Lf~L~~~fdlR-W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           30 DDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             BTTBCHHHHHHHHHHHHHTTTC-HHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCC-eeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            3799999999999999999976 99999999     5899999999997643

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.56  E-value=3.4e-05  Score=75.52  Aligned_cols=48  Identities=25%  Similarity=0.356  Sum_probs=43.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccC
Q 023744           10 RIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQL   58 (278)
Q Consensus        10 ~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L   58 (278)
                      +...+||.||.+++++++.+|| ++|..||+.|..|+..||+.+|.++.
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR  425 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            4567999999999999999999 68999999999999999999986643

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.47  E-value=7.3e-05  Score=57.98  Aligned_cols=43  Identities=23%  Similarity=0.503  Sum_probs=39.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccccc
Q 023744           12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWC   55 (278)
Q Consensus        12 kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~   55 (278)
                      ...||+||.+++.+....|| ++|..|+..|++|+..+|-+.|.
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY   85 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYY   85 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHh
Confidence            46799999999999999999 67999999999999999987764

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.45  E-value=8.2e-05  Score=54.64  Aligned_cols=46  Identities=20%  Similarity=0.250  Sum_probs=40.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChHHHhh-hCCCCCcccccccccc
Q 023744           10 RIKGPWSPEEDEALQQLVQKHGPRNWSLISK-SIPGRSGKSCRLRWCN   56 (278)
Q Consensus        10 ~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~-~lp~Rs~kqcr~Rw~n   56 (278)
                      .....||+||-+++.+.+.+|| +||..|++ .|++|+..+|...|..
T Consensus         6 ~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            6 SGMEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            3455899999999999999999 57999999 5999999999877643

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=97.00  E-value=0.00044  Score=59.96  Aligned_cols=101  Identities=14%  Similarity=0.128  Sum_probs=67.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC--CCChHHHhhh--CCCCCcccccccccc-----------------------------
Q 023744           10 RIKGPWSPEEDEALQQLVQKHG--PRNWSLISKS--IPGRSGKSCRLRWCN-----------------------------   56 (278)
Q Consensus        10 ~~kg~WT~EED~~L~~lV~kyG--~~nW~~Ia~~--lp~Rs~kqcr~Rw~n-----------------------------   56 (278)
                      .....||..|-..|+.++.+||  ...|..|+..  +.+++...+..-+..                             
T Consensus         5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~   84 (211)
T 4b4c_A            5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGP   84 (211)
T ss_dssp             ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CC
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccch
Confidence            3456799999999999999999  4569999864  567666432220000                             


Q ss_pred             -------------------------------------cCC-----CccccCCCChHHHHHHHHHHHHcC-CCcccccc--
Q 023744           57 -------------------------------------QLS-----PQVEHRAFTPEEDEMIIRAHARFG-NKWATIAR--   91 (278)
Q Consensus        57 -------------------------------------~L~-----p~i~k~~WT~EED~~Ll~~v~~~G-~kW~~IA~--   91 (278)
                                                           +.-     +..-...||.+||..||..+.+|| ++|..|..  
T Consensus        85 ~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~  164 (211)
T 4b4c_A           85 TFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP  164 (211)
T ss_dssp             EEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred             hhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence                                                 000     011123599999999999999999 78988864  


Q ss_pred             cc--C----------CCCHHHHHHHHHHHhh
Q 023744           92 LL--N----------GRTDNAIKNHWNSTLK  110 (278)
Q Consensus        92 ~l--p----------gRT~~~~knRw~~~lk  110 (278)
                      .|  .          .++...+..|-..+|+
T Consensus       165 ~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~  195 (211)
T 4b4c_A          165 DLSLTHKILPDDPDKKPQAKQLQTRADYLIK  195 (211)
T ss_dssp             SSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred             hcCccccccccccccCCChHHHHHHHHHHHH
Confidence            21  1          2456778888766655

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.92  E-value=0.0016  Score=61.92  Aligned_cols=100  Identities=19%  Similarity=0.311  Sum_probs=76.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHhhhCC-CCCcccccc-------ccccc------C--------------------
Q 023744           13 GPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRL-------RWCNQ------L--------------------   58 (278)
Q Consensus        13 g~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp-~Rs~kqcr~-------Rw~n~------L--------------------   58 (278)
                      +.||.-|=..++.++.+||..+-..||..|. +++...++.       ||..+      +                    
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L  203 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL  203 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999888999999997 888765542       22111      0                    


Q ss_pred             ------------------CCc-cccCCCChHHHHHHHHHHHHcCC----Ccccccc------------ccCCCCHHHHHH
Q 023744           59 ------------------SPQ-VEHRAFTPEEDEMIIRAHARFGN----KWATIAR------------LLNGRTDNAIKN  103 (278)
Q Consensus        59 ------------------~p~-i~k~~WT~EED~~Ll~~v~~~G~----kW~~IA~------------~lpgRT~~~~kn  103 (278)
                                        .+. .+...||++||..||-++.+||-    .|..|-.            +|..||+..|..
T Consensus       204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r  283 (374)
T 2y9y_A          204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR  283 (374)
T ss_dssp             HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred             HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence                              011 13457999999999999999994    4998833            246799999999


Q ss_pred             HHHHHhhhh
Q 023744          104 HWNSTLKRK  112 (278)
Q Consensus       104 Rw~~~lk~k  112 (278)
                      |-+.+++-.
T Consensus       284 Rc~tLi~~I  292 (374)
T 2y9y_A          284 RGNTLLQCL  292 (374)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998888543

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.83  E-value=0.00025  Score=53.52  Aligned_cols=48  Identities=25%  Similarity=0.448  Sum_probs=39.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC------CC---ChHHHhhhC----CCCCcccccccccccC
Q 023744           11 IKGPWSPEEDEALQQLVQKHG------PR---NWSLISKSI----PGRSGKSCRLRWCNQL   58 (278)
Q Consensus        11 ~kg~WT~EED~~L~~lV~kyG------~~---nW~~Ia~~l----p~Rs~kqcr~Rw~n~L   58 (278)
                      +...||.+|-.+|+++...+.      ..   -|..||..|    -.|++.||+.+|.|+.
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            456899999999999997631      11   399999987    3899999999998864

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.79  E-value=0.00022  Score=52.13  Aligned_cols=45  Identities=16%  Similarity=0.454  Sum_probs=40.2

Q ss_pred             CCCHHHHHHHHHHHHHhCC--CChHHHhhhCCCCCcccccccccccCC
Q 023744           14 PWSPEEDEALQQLVQKHGP--RNWSLISKSIPGRSGKSCRLRWCNQLS   59 (278)
Q Consensus        14 ~WT~EED~~L~~lV~kyG~--~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~   59 (278)
                      .||.|||..|+..+++.|+  ..|..||+.+ +|+..|+.+||...++
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            5999999999999999986  2499999999 9999999999977653

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.73  E-value=0.00053  Score=51.65  Aligned_cols=48  Identities=17%  Similarity=0.428  Sum_probs=39.1

Q ss_pred             cCCCChHHHHHHHHHHHHcCC----------CccccccccC----CCCHHHHHHHHHHHhhh
Q 023744           64 HRAFTPEEDEMIIRAHARFGN----------KWATIARLLN----GRTDNAIKNHWNSTLKR  111 (278)
Q Consensus        64 k~~WT~EED~~Ll~~v~~~G~----------kW~~IA~~lp----gRT~~~~knRw~~~lk~  111 (278)
                      ...||.+|..+||.+...+..          .|..||..|.    .||+.||+++|.++.+.
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~   65 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE   65 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            468999999999999875321          4999998763    69999999999776665

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.51  E-value=0.00089  Score=51.59  Aligned_cols=45  Identities=20%  Similarity=0.420  Sum_probs=40.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--CChHHHhhhCCCCCccccccccccc
Q 023744           13 GPWSPEEDEALQQLVQKHGP--RNWSLISKSIPGRSGKSCRLRWCNQ   57 (278)
Q Consensus        13 g~WT~EED~~L~~lV~kyG~--~nW~~Ia~~lp~Rs~kqcr~Rw~n~   57 (278)
                      --||.|||..|+...++.|.  ..|..||+.|.+|+..|+.+||+..
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L   80 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL   80 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence            35999999999999999986  3599999999999999999999653

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=95.37  E-value=0.013  Score=45.21  Aligned_cols=46  Identities=20%  Similarity=0.358  Sum_probs=39.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC-----CCCcccccccccccC
Q 023744           12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-----GRSGKSCRLRWCNQL   58 (278)
Q Consensus        12 kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp-----~Rs~kqcr~Rw~n~L   58 (278)
                      -..||.||...|.+|+++|..+ |..|+....     .|+..++++||....
T Consensus        30 ~~~WT~eETd~LfdLc~~fdlR-w~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           30 DDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             BTTBCHHHHHHHHHHHHHTTTC-HHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCC-eEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            3579999999999999999966 999998873     789999999997653

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=94.83  E-value=0.041  Score=39.69  Aligned_cols=47  Identities=17%  Similarity=0.180  Sum_probs=40.0

Q ss_pred             ccCCCChHHHHHHHHHHHHcCCC---cccccccc--CCCCHHHHHHHHHHHh
Q 023744           63 EHRAFTPEEDEMIIRAHARFGNK---WATIARLL--NGRTDNAIKNHWNSTL  109 (278)
Q Consensus        63 ~k~~WT~EED~~Ll~~v~~~G~k---W~~IA~~l--pgRT~~~~knRw~~~l  109 (278)
                      .+-.||+|..+..++++.++|..   ++.|.+.|  +|.|..+|+.|.+.+.
T Consensus         6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR   57 (64)
T 1irz_A            6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999965   67888765  6899999999987654

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=93.12  E-value=0.1  Score=48.27  Aligned_cols=50  Identities=20%  Similarity=0.421  Sum_probs=42.3

Q ss_pred             CCCChHHHHHHHHHHHHcCC-CccccccccCCCCHHHHHHHHHHHhhhhhhc
Q 023744           65 RAFTPEEDEMIIRAHARFGN-KWATIARLLNGRTDNAIKNHWNSTLKRKCSS  115 (278)
Q Consensus        65 ~~WT~EED~~Ll~~v~~~G~-kW~~IA~~lpgRT~~~~knRw~~~lk~k~~~  115 (278)
                      +.||..|...++.++.+||. +|..||..|+|+|...|+.++ ..|=.++..
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~-~vFw~ry~e  161 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYN-AVFWERCTE  161 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHH-HHHHHHGGG
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHH-HHHHHhHHH
Confidence            57999999999999999996 699999999999999997665 444455543

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=92.26  E-value=0.11  Score=37.35  Aligned_cols=49  Identities=10%  Similarity=0.063  Sum_probs=38.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCC--hHHHhhhC--CCCCccccccccccc
Q 023744            9 DRIKGPWSPEEDEALQQLVQKHGPRN--WSLISKSI--PGRSGKSCRLRWCNQ   57 (278)
Q Consensus         9 ~~~kg~WT~EED~~L~~lV~kyG~~n--W~~Ia~~l--p~Rs~kqcr~Rw~n~   57 (278)
                      +..+-.||+|..+.+.++|.+.|...  +..|.+.|  ++.|..++.-|.++|
T Consensus         4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            45566899999999999999999432  78998876  577888887666543

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=90.85  E-value=0.17  Score=43.34  Aligned_cols=53  Identities=19%  Similarity=0.387  Sum_probs=41.8

Q ss_pred             ccCCCChHHHHHHHHHHHHcC---CCcccccc--ccCCCCHHHHHHHHHHHhhhhhhcc
Q 023744           63 EHRAFTPEEDEMIIRAHARFG---NKWATIAR--LLNGRTDNAIKNHWNSTLKRKCSSM  116 (278)
Q Consensus        63 ~k~~WT~EED~~Ll~~v~~~G---~kW~~IA~--~lpgRT~~~~knRw~~~lk~k~~~~  116 (278)
                      ....||+.|-..|++++.+||   .+|..|+.  .|.+|+...++..+. .|...|...
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~-~f~~~c~~~   63 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGE-LVHNGCIKA   63 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHH-HHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHH-HHHHHHHHH
Confidence            457899999999999999999   47999985  488999999998664 454555443

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=89.93  E-value=0.23  Score=45.18  Aligned_cols=27  Identities=41%  Similarity=0.605  Sum_probs=25.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHhh
Q 023744           14 PWSPEEDEALQQLVQKHGPRNWSLISK   40 (278)
Q Consensus        14 ~WT~EED~~L~~lV~kyG~~nW~~Ia~   40 (278)
                      .|+.+||..|+..|.+||.++|..|..
T Consensus       170 ~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          170 NWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            499999999999999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	278
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	8e-25
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	3e-11
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-23
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	6e-11
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	4e-23
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	5e-12
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	7e-21
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	8e-07
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	6e-17
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	1e-07
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	4e-16
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	5e-16
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	1e-14
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	4e-09
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	1e-14
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-14
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	2e-14
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	6e-08
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	6e-14
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	3e-13
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	2e-13
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	6e-10
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	2e-13
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	4e-13
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	4e-13
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	2e-06
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	6e-09
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	1e-07
d2crga1	57	a.4.1.3 (A:8-64) Metastasis associated protein MTA	0.002

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.7 bits (230), Expect = 8e-25
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 12 KGPWSPEEDEALQQLVQKHGPR-----NWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRA 66
          K  ++ EEDE +  +V+K+  R      +  IS  +P  +G S R R+   LS ++E+  
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 67 FTPEEDEMIIRAHARFGN 84
             +  +++         
Sbjct: 61 EVDKFGKLVRDDDGNLIK 78

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.5 bits (136), Expect = 3e-11
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 65  RAFTPEEDEMIIRAHARFGNK------WATIARLLNGRTDNAIKNHWNSTLKRK 112
            +FT EEDE I+    +   +      +  I+  +   T N+I++ +   L ++
Sbjct: 2   ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR 55

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.2 bits (219), Expect = 2e-23
 Identities = 30/51 (58%), Positives = 40/51 (78%)

Query: 11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
          IKGPW+ EED+ L +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+
Sbjct: 2  IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.3 bits (131), Expect = 6e-11
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 66  AFTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLK 110
            +T EED+ +I+   ++G  +W+ IA+ L GR     +  W++ L 
Sbjct: 5   PWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.1 bits (216), Expect = 4e-23
 Identities = 19/50 (38%), Positives = 33/50 (66%)

Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61
          K  W+ EEDE L++LV+++G  +W +I+  +P R+   C+ RW   L+P+
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.5 bits (139), Expect = 5e-12
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 66  AFTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLK 110
            +T EEDE + +   + G + W  IA  L  RTD   ++ W   L 
Sbjct: 3   RWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 82.4 bits (203), Expect = 7e-21
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 14 PWSPEEDEALQQLVQKHGPRNWSLISK----SIPGRSGKSCRLRWCNQL-----SPQVEH 64
          P+S  E EAL + V+  G   W  +      +   R+    + +W   +     +PQ   
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 65 RAFTPEED-EMIIRAHARFGNK 85
              P++  + ++ AHA +  +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 43.9 bits (103), Expect = 8e-07
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 65  RAFTPEEDEMIIRAHARFGNK-WATIARL----LNGRTDNAIKNHWNSTLKRKCSS 115
           R F+  E E ++ A    G   W  +        + RT   +K+ W + +     +
Sbjct: 1   RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA 56

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.1 bits (174), Expect = 6e-17
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP--GRSGKSCRLRWCN 56
          +  W  EED+ L+  V+K+G  NWS I        R+    + RW  
Sbjct: 2  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (108), Expect = 1e-07
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 65  RAFTPEEDEMIIRAHARFGNK-WATIARL--LNGRTDNAIKNHWNSTLK 110
           +A+  EED+ +     ++G   W+ I      N RT   +K+ W +  K
Sbjct: 3   QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.7 bits (168), Expect = 4e-16
 Identities = 30/45 (66%), Positives = 38/45 (84%)

Query: 66  AFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLK 110
           ++T EED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++
Sbjct: 3   SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.3 bits (167), Expect = 5e-16
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQL 58
          K  W+ EED  + Q  ++     W+ I+K +PGR+  + +  W + +
Sbjct: 1  KTSWTEEEDRIIYQAHKRL-GNRWAEIAKLLPGRTDNAIKNHWNSTM 46

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (158), Expect = 1e-14
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 5  RREVDRI-KGPWSPEEDEALQQLVQKHG---PRNWSLISKSIPGRSGKSCRLRW 54
          R+E  R  + PW+  + + L+  +Q++       W  I++ +P +S + C  R+
Sbjct: 4  RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (118), Expect = 4e-09
 Identities = 6/51 (11%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 59  SPQVEHRAFTPEEDEMIIRAHARFG----NKWATIARLLNGRTDNAIKNHW 105
             +     +T  + +++  A  ++     + W  IAR +  ++       +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (158), Expect = 1e-14
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 8  VDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCN 56
          + +    W+ EE     Q ++K+G  ++  IS  I  +S    +  + N
Sbjct: 1  IQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNKSVVQVKNFFVN 48

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (157), Expect = 2e-14
 Identities = 9/45 (20%), Positives = 25/45 (55%)

Query: 67  FTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 111
           +T EE  + ++A  ++G  +  I+ ++  ++   +KN + +  +R
Sbjct: 8   WTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (155), Expect = 2e-14
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP--GRSGKSCRLRWCNQLSP 60
          K  W+ EE E ++  VQK+G  NW+ ISK+ P   R+    + RW      
Sbjct: 2  KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRL 52

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 6e-08
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 65  RAFTPEEDEMIIRAHARFGNK-WATIARL--LNGRTDNAIKNHWNSTLKRK 112
           + +T EE E +     ++G   WA I++      RT   IK+ W +  +  
Sbjct: 3   QKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 53

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (153), Expect = 6e-14
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEE 71
             W+ EE E  +Q + K   R W+ ISK I  R+    +         +V+        
Sbjct: 2  SVKWTIEEKELFEQGLAKF-GRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETP 60

Query: 72 DE 73
          ++
Sbjct: 61 NQ 62

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (148), Expect = 3e-13
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 67  FTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKC 113
           +T EE E+  +  A+FG +W  I++L+  RT   +K++     K K 
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV 51

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 61.9 bits (150), Expect = 2e-13
 Identities = 10/54 (18%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 14 PWSPEEDEALQQLVQKHG---PRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEH 64
          PWS +E++A ++ +  +    P  W+ +++++ GR+ +  +  +   L   +++
Sbjct: 3  PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE-ILVEDIKY 55

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 52.2 bits (125), Expect = 6e-10
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 65  RAFTPEEDEMIIRAHARFG----NKWATIARLLNGRTDNAIKNHWNSTLK 110
           R ++ +E++   RA A +     ++WA +AR + GRT   +K H+   ++
Sbjct: 2   RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE 51

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (151), Expect = 2e-13
 Identities = 8/45 (17%), Positives = 16/45 (35%)

Query: 67  FTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 111
           ++ +E E       +    +  IA  L  +T      ++  T K 
Sbjct: 20  WSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (148), Expect = 4e-13
 Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 10 RIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCN 56
          ++   WS +E E  ++   +H  +N+ LI+  +  ++   C L +  
Sbjct: 15 QVMNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL 60

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (146), Expect = 4e-13
 Identities = 9/42 (21%), Positives = 20/42 (47%)

Query: 15 WSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCN 56
          W+ +E+ AL + V   G  NW  ++  +  ++ + C   +  
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK 45

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (98), Expect = 2e-06
 Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 67  FTPEEDEMIIRAHARFGNK-WATIARLLNGRTDNAIKNHWN 106
           +T +E+  ++ A    G   W  +A  +  +T    + H+ 
Sbjct: 4   WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 44

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.3 bits (120), Expect = 6e-09
 Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 11 IKGPWSPEEDEALQQLVQKHGPRN--WSLISKSIPGRSGKSCRLRW 54
              W+ E D  +  + Q+ G +   +S+IS+ +  ++      R+
Sbjct: 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRF 77

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.8 bits (111), Expect = 1e-07
 Identities = 11/76 (14%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 39  SKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNK---WATIARLLNG 95
           + ++P  S  +         S   +   +T E D +I+      G +   ++ I++ L  
Sbjct: 8   AGALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN 67

Query: 96  RTDNAIKNHWNSTLKR 111
           +T   + + +   ++ 
Sbjct: 68  KTPVEVSHRFRELMQL 83

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.6 bits (77), Expect = 0.002
 Identities = 9/37 (24%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 15 WSPEEDEALQQLVQKHGPRNWSLISKS-IPGRSGKSC 50
          WS  E    ++ ++K+G ++++ I +  +P +S  S 
Sbjct: 4  WSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSI 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	278
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.76
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.74
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.69
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.66
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.61
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.59
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.57
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.54
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.51
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.5
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.47
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.46
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.45
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.43
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.42
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.39
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.39
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.34
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.3
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.29
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.26
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.24
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.17
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.15
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.13
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.03
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.96
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.79
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.25
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.04
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.92
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.91
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.46
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.34
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.21
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	97.07
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.46
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	95.44
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.25
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.13
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	91.67
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	88.14
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	86.1

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=3.9e-21  Score=146.52  Aligned_cols=71  Identities=25%  Similarity=0.352  Sum_probs=65.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-----ChHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHHc
Q 023744           12 KGPWSPEEDEALQQLVQKHGPR-----NWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARF   82 (278)
Q Consensus        12 kg~WT~EED~~L~~lV~kyG~~-----nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~~   82 (278)
                      |++||+|||++|+++|.+||..     +|.+||+.||+|+++||++||.++|+|.++++.||.+||.+|+..+..+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            6899999999999999999865     4999999999999999999999999999999999999999988766443

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=4.4e-19  Score=122.92  Aligned_cols=52  Identities=58%  Similarity=1.136  Sum_probs=49.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCc
Q 023744           10 RIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ   61 (278)
Q Consensus        10 ~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~   61 (278)
                      ++||+||+|||++|+++|++||..+|..||+.|++|+..||++||.++|+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            4799999999999999999999889999999999999999999999999984

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=3.3e-18  Score=117.44  Aligned_cols=50  Identities=38%  Similarity=0.902  Sum_probs=48.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCc
Q 023744           12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ   61 (278)
Q Consensus        12 kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~   61 (278)
                      |++||+|||++|+++|.+||..+|..||..|++|+..||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            68899999999999999999989999999999999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=2.5e-17  Score=111.73  Aligned_cols=47  Identities=64%  Similarity=1.113  Sum_probs=45.0

Q ss_pred             cCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhh
Q 023744           64 HRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLK  110 (278)
Q Consensus        64 k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk  110 (278)
                      +.+||+|||++|+++|.+||++|+.||.+|||||+++||+||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999998875

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=1.6e-16  Score=109.80  Aligned_cols=50  Identities=28%  Similarity=0.681  Sum_probs=46.7

Q ss_pred             cccCCCChHHHHHHHHHHHHcC-CCccccccccCCCCHHHHHHHHHHHhhh
Q 023744           62 VEHRAFTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLKR  111 (278)
Q Consensus        62 i~k~~WT~EED~~Ll~~v~~~G-~kW~~IA~~lpgRT~~~~knRw~~~lk~  111 (278)
                      +.+|+||+|||++|+++|.+|| ++|..||+.|+|||+.||++||+++|+.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            4689999999999999999999 6899999999999999999999988754

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.59  E-value=1.7e-16  Score=119.62  Aligned_cols=72  Identities=21%  Similarity=0.340  Sum_probs=58.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHhhh----CCCCCcccccccccccC-----CCccccCCCChHHHHHHHHHHHHcC
Q 023744           13 GPWSPEEDEALQQLVQKHGPRNWSLISKS----IPGRSGKSCRLRWCNQL-----SPQVEHRAFTPEEDEMIIRAHARFG   83 (278)
Q Consensus        13 g~WT~EED~~L~~lV~kyG~~nW~~Ia~~----lp~Rs~kqcr~Rw~n~L-----~p~i~k~~WT~EED~~Ll~~v~~~G   83 (278)
                      .+||+|||++|+++|++||..+|..|++.    +++|+..||++||+|+|     .+..+++.|+++|.   +..|..++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~el---l~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDL---LDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHH---HHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHHH---HHHHHHHH
Confidence            37999999999999999999899999975    58999999999999988     56778899998773   33333344


Q ss_pred             CCcc
Q 023744           84 NKWA   87 (278)
Q Consensus        84 ~kW~   87 (278)
                      .+|+
T Consensus        78 ~~ws   81 (83)
T d2ckxa1          78 AYWS   81 (83)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            4554

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.7e-16  Score=109.05  Aligned_cols=53  Identities=32%  Similarity=0.467  Sum_probs=48.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHhhh--CCCCCcccccccccccCCCccc
Q 023744           11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKS--IPGRSGKSCRLRWCNQLSPQVE   63 (278)
Q Consensus        11 ~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~--lp~Rs~kqcr~Rw~n~L~p~i~   63 (278)
                      ++++||+|||++|+++|++||..+|..|++.  +++|++.||++||+|++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            4789999999999999999999899999997  5699999999999999988764

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=1.8e-15  Score=103.48  Aligned_cols=48  Identities=31%  Similarity=0.567  Sum_probs=45.0

Q ss_pred             cCCCChHHHHHHHHHHHHcC-CCccccccccCCCCHHHHHHHHHHHhhh
Q 023744           64 HRAFTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLKR  111 (278)
Q Consensus        64 k~~WT~EED~~Ll~~v~~~G-~kW~~IA~~lpgRT~~~~knRw~~~lk~  111 (278)
                      +++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 5799999999999999999999998864

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=3e-15  Score=101.30  Aligned_cols=46  Identities=30%  Similarity=0.705  Sum_probs=43.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccC
Q 023744           12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQL   58 (278)
Q Consensus        12 kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L   58 (278)
                      |.+||+|||++|+++|++||. +|..||.+||+||..+|+.||.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~gRt~~~~knr~~~~l   46 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGRTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcCCCCHHHHHHHHHHHc
Confidence            679999999999999999996 5999999999999999999998876

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.4e-15  Score=103.02  Aligned_cols=48  Identities=31%  Similarity=0.441  Sum_probs=44.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHhhhC--CCCCcccccccccccC
Q 023744           11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSI--PGRSGKSCRLRWCNQL   58 (278)
Q Consensus        11 ~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~l--p~Rs~kqcr~Rw~n~L   58 (278)
                      ++++||+|||++|+++|.+||..+|..|++.+  .+|++.||++||.|+.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999998999999875  4999999999998865

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.9e-15  Score=99.78  Aligned_cols=45  Identities=20%  Similarity=0.505  Sum_probs=42.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccC
Q 023744           14 PWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQL   58 (278)
Q Consensus        14 ~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L   58 (278)
                      .||+|||++|+++|++||.+||..||+.|++||+.||+.||.+++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHhC
Confidence            499999999999999999999999999999999999999998753

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=2.2e-14  Score=108.67  Aligned_cols=54  Identities=22%  Similarity=0.423  Sum_probs=50.0

Q ss_pred             cCCCChHHHHHHHHHHHHcCCC------ccccccccCCCCHHHHHHHHHHHhhhhhhccc
Q 023744           64 HRAFTPEEDEMIIRAHARFGNK------WATIARLLNGRTDNAIKNHWNSTLKRKCSSML  117 (278)
Q Consensus        64 k~~WT~EED~~Ll~~v~~~G~k------W~~IA~~lpgRT~~~~knRw~~~lk~k~~~~~  117 (278)
                      ++.||+|||++|+++|.+||.+      |..||.+|||||++||++||+++|.+.+....
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~   60 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY   60 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEE
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCC
Confidence            5789999999999999999974      99999999999999999999999999987643

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.8e-14  Score=99.38  Aligned_cols=51  Identities=25%  Similarity=0.522  Sum_probs=46.2

Q ss_pred             ccCCCChHHHHHHHHHHHHcC-CCccccccc--cCCCCHHHHHHHHHHHhhhhh
Q 023744           63 EHRAFTPEEDEMIIRAHARFG-NKWATIARL--LNGRTDNAIKNHWNSTLKRKC  113 (278)
Q Consensus        63 ~k~~WT~EED~~Ll~~v~~~G-~kW~~IA~~--lpgRT~~~~knRw~~~lk~k~  113 (278)
                      ++.+||+|||++|+++|.+|| ++|..|++.  |++||+.||++||+++++..+
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~   54 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   54 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCC
Confidence            467999999999999999999 589999987  569999999999999988754

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.7e-14  Score=97.70  Aligned_cols=48  Identities=27%  Similarity=0.532  Sum_probs=43.4

Q ss_pred             ccCCCChHHHHHHHHHHHHcCC-Ccccccccc--CCCCHHHHHHHHHHHhh
Q 023744           63 EHRAFTPEEDEMIIRAHARFGN-KWATIARLL--NGRTDNAIKNHWNSTLK  110 (278)
Q Consensus        63 ~k~~WT~EED~~Ll~~v~~~G~-kW~~IA~~l--pgRT~~~~knRw~~~lk  110 (278)
                      ++++||+|||+.|+++|.+||. +|..|++.+  .|||+.||++||+++.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            4789999999999999999995 899999874  59999999999988765

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.7e-14  Score=100.42  Aligned_cols=52  Identities=29%  Similarity=0.463  Sum_probs=48.2

Q ss_pred             CCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhhhhhcc
Q 023744           65 RAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSM  116 (278)
Q Consensus        65 ~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k~~~~  116 (278)
                      ..||+|||++|++++.+||.+|..||.+|++||+.+|++||+.++++.....
T Consensus         3 ~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~   54 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCG   54 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSC
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcC
Confidence            5799999999999999999999999999999999999999999998876543

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=9.8e-14  Score=97.99  Aligned_cols=54  Identities=19%  Similarity=0.501  Sum_probs=48.8

Q ss_pred             ccccCCCCCCCCCCHHHHHHHHHHHHHhCCC---ChHHHhhhCCCCCcccccccccc
Q 023744            3 FNRREVDRIKGPWSPEEDEALQQLVQKHGPR---NWSLISKSIPGRSGKSCRLRWCN   56 (278)
Q Consensus         3 ~~~~~~~~~kg~WT~EED~~L~~lV~kyG~~---nW~~Ia~~lp~Rs~kqcr~Rw~n   56 (278)
                      +....+...+++||+|||++|+++|.+||..   +|..||..||+|+..||++||+.
T Consensus         3 ~~~~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1           3 LRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL   59 (60)
T ss_dssp             CCCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred             CccccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4566788899999999999999999999975   49999999999999999999963

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=9.9e-14  Score=93.61  Aligned_cols=44  Identities=18%  Similarity=0.447  Sum_probs=41.5

Q ss_pred             CCChHHHHHHHHHHHHcC-CCccccccccCCCCHHHHHHHHHHHh
Q 023744           66 AFTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTL  109 (278)
Q Consensus        66 ~WT~EED~~Ll~~v~~~G-~kW~~IA~~lpgRT~~~~knRw~~~l  109 (278)
                      .||.|||.+|++++.+|| ++|..||++|++||+.||++||++++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 57999999999999999999998764

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=6.7e-14  Score=100.02  Aligned_cols=58  Identities=26%  Similarity=0.304  Sum_probs=51.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCCCChHH
Q 023744           13 GPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEE   71 (278)
Q Consensus        13 g~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EE   71 (278)
                      .+||+|||++|+++|.+|| .+|..||++|++||..||+.||.+++.+..+.+.+...+
T Consensus         3 ~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~~~~~~   60 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETP   60 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCCCS
T ss_pred             CCCCHHHHHHHHHHHHHhc-chHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            5799999999999999999 689999999999999999999999988777766665443

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.4e-12  Score=91.90  Aligned_cols=50  Identities=12%  Similarity=0.299  Sum_probs=44.9

Q ss_pred             CCccccCCCChHHHHHHHHHHHHcCC----CccccccccCCCCHHHHHHHHHHH
Q 023744           59 SPQVEHRAFTPEEDEMIIRAHARFGN----KWATIARLLNGRTDNAIKNHWNST  108 (278)
Q Consensus        59 ~p~i~k~~WT~EED~~Ll~~v~~~G~----kW~~IA~~lpgRT~~~~knRw~~~  108 (278)
                      .+...+++||+|||++|++++.+||.    +|..||..|||||..||++||..+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45567789999999999999999995    599999999999999999999653

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=1.6e-12  Score=99.54  Aligned_cols=73  Identities=15%  Similarity=0.212  Sum_probs=65.6

Q ss_pred             hhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHHcCCC---ccccccccCCCCHHHHHHHHHHHhhhh
Q 023744           40 KSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNK---WATIARLLNGRTDNAIKNHWNSTLKRK  112 (278)
Q Consensus        40 ~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~~G~k---W~~IA~~lpgRT~~~~knRw~~~lk~k  112 (278)
                      ..+|..+..++..++.+..+.......||.|||++||+.++++|.+   |..||+.|+||+.++|++||+.+++..
T Consensus         9 ~~~p~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf   84 (95)
T d1ug2a_           9 GALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            3567788888888888888888888999999999999999999987   999999999999999999998777654

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.26  E-value=3.2e-13  Score=96.21  Aligned_cols=44  Identities=18%  Similarity=0.533  Sum_probs=40.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---hHHHhhhCCCCCcccccccccc
Q 023744           13 GPWSPEEDEALQQLVQKHGPRN---WSLISKSIPGRSGKSCRLRWCN   56 (278)
Q Consensus        13 g~WT~EED~~L~~lV~kyG~~n---W~~Ia~~lp~Rs~kqcr~Rw~n   56 (278)
                      .+||+|||++|.++|++||..+   |.+||..|++||..||++||+.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4799999999999999999754   9999999999999999999943

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.24  E-value=2.8e-12  Score=91.26  Aligned_cols=46  Identities=30%  Similarity=0.662  Sum_probs=41.8

Q ss_pred             CCCChHHHHHHHHHHHHcCC----CccccccccCCCCHHHHHHHHHHHhh
Q 023744           65 RAFTPEEDEMIIRAHARFGN----KWATIARLLNGRTDNAIKNHWNSTLK  110 (278)
Q Consensus        65 ~~WT~EED~~Ll~~v~~~G~----kW~~IA~~lpgRT~~~~knRw~~~lk  110 (278)
                      .+||+|||.+|++++.+||.    +|.+||.+|||||..||++||+.+++
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~   51 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE   51 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            47999999999999999995    49999999999999999999966543

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.2e-11  Score=89.02  Aligned_cols=47  Identities=15%  Similarity=0.136  Sum_probs=43.4

Q ss_pred             ccCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHh
Q 023744           63 EHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTL  109 (278)
Q Consensus        63 ~k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~l  109 (278)
                      ...+||+|||++|++++.+||.+|..||.+|||||..+|+++|+...
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            44689999999999999999999999999999999999999997543

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.15  E-value=1.6e-11  Score=91.84  Aligned_cols=52  Identities=21%  Similarity=0.457  Sum_probs=46.1

Q ss_pred             CCCChHHHHHHHHHHHHcCC-Cccccccc----cCCCCHHHHHHHHHHHhhhhhhcc
Q 023744           65 RAFTPEEDEMIIRAHARFGN-KWATIARL----LNGRTDNAIKNHWNSTLKRKCSSM  116 (278)
Q Consensus        65 ~~WT~EED~~Ll~~v~~~G~-kW~~IA~~----lpgRT~~~~knRw~~~lk~k~~~~  116 (278)
                      .+||.|||++|+++|.+||. +|..|++.    +++||+.+|++||+++++......
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~   57 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAP   57 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCG
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCc
Confidence            47999999999999999995 89999974    689999999999999998765443

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.1e-11  Score=88.45  Aligned_cols=48  Identities=19%  Similarity=0.429  Sum_probs=44.5

Q ss_pred             cCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhh
Q 023744           64 HRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR  111 (278)
Q Consensus        64 k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~  111 (278)
                      ...||+|||.+|++++..||.+|..||.+|+|||..+|+++|+.+.++
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            467999999999999999999999999999999999999999876653

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.7e-11  Score=84.62  Aligned_cols=48  Identities=25%  Similarity=0.356  Sum_probs=43.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccC
Q 023744           10 RIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQL   58 (278)
Q Consensus        10 ~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L   58 (278)
                      +...+||+|||++|.+++..|| .+|..||.+|++|+..+|+.+|.++.
T Consensus         3 k~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~kt~~q~~~~y~~~~   50 (65)
T d2iw5b1           3 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR   50 (65)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhC-chHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            3456799999999999999999 67999999999999999999998765

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=5.9e-11  Score=85.30  Aligned_cols=49  Identities=20%  Similarity=0.436  Sum_probs=43.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccC
Q 023744            9 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQL   58 (278)
Q Consensus         9 ~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L   58 (278)
                      .....+||+|||++|.++|.+|| .+|..||..|++|+..||+.+|....
T Consensus        14 ~~~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          14 RQVMNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTTTCCCTTTHHHHHHHHHHTT-SCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHC-CcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            44556899999999999999999 57999999999999999999997543

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.79  E-value=1.2e-09  Score=83.22  Aligned_cols=52  Identities=17%  Similarity=0.340  Sum_probs=45.7

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCCCC--hHHHhhhCCCCCccccccccccc
Q 023744            6 REVDRIKGPWSPEEDEALQQLVQKHGPRN--WSLISKSIPGRSGKSCRLRWCNQ   57 (278)
Q Consensus         6 ~~~~~~kg~WT~EED~~L~~lV~kyG~~n--W~~Ia~~lp~Rs~kqcr~Rw~n~   57 (278)
                      .....+...||.|||++|+..++++|+..  |..|++.|++|++.||++||...
T Consensus        27 ~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~L   80 (95)
T d1ug2a_          27 SSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             CCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            34455677899999999999999999755  99999999999999999999654

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=5.1e-07  Score=62.32  Aligned_cols=43  Identities=14%  Similarity=0.288  Sum_probs=39.9

Q ss_pred             CCCChHHHHHHHHHHHHcCCCcccccc-ccCCCCHHHHHHHHHH
Q 023744           65 RAFTPEEDEMIIRAHARFGNKWATIAR-LLNGRTDNAIKNHWNS  107 (278)
Q Consensus        65 ~~WT~EED~~Ll~~v~~~G~kW~~IA~-~lpgRT~~~~knRw~~  107 (278)
                      ..||+||..++.+++..||.+|..|++ .+|+||..+|.+.|+.
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            469999999999999999999999997 5799999999999874

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.4e-06  Score=60.56  Aligned_cols=44  Identities=23%  Similarity=0.419  Sum_probs=39.4

Q ss_pred             CCCChHHHHHHHHHHHHcC----CCccccccccCCCCHHHHHHHHHHHh
Q 023744           65 RAFTPEEDEMIIRAHARFG----NKWATIARLLNGRTDNAIKNHWNSTL  109 (278)
Q Consensus        65 ~~WT~EED~~Ll~~v~~~G----~kW~~IA~~lpgRT~~~~knRw~~~l  109 (278)
                      ..||.||+.+|.+++.+|.    .+|.+||..+ |||..+|..||+.+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            4799999999999999996    3599999999 999999999996443

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.2e-06  Score=59.57  Aligned_cols=44  Identities=20%  Similarity=0.333  Sum_probs=38.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CChHHHhhhCCCCCccccccccccc
Q 023744           13 GPWSPEEDEALQQLVQKHGP---RNWSLISKSIPGRSGKSCRLRWCNQ   57 (278)
Q Consensus        13 g~WT~EED~~L~~lV~kyG~---~nW~~Ia~~lp~Rs~kqcr~Rw~n~   57 (278)
                      +.||+||+.+|.+++.+|..   ..|..||..| ||+..+|..||+.+
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence            47999999999999999953   3499999999 99999999999653

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=3.3e-06  Score=58.06  Aligned_cols=43  Identities=21%  Similarity=0.325  Sum_probs=38.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHhhh-CCCCCccccccccccc
Q 023744           14 PWSPEEDEALQQLVQKHGPRNWSLISKS-IPGRSGKSCRLRWCNQ   57 (278)
Q Consensus        14 ~WT~EED~~L~~lV~kyG~~nW~~Ia~~-lp~Rs~kqcr~Rw~n~   57 (278)
                      .||+||.+++.+.+.+|| +||..|++. +|+|+..+|...|.+.
T Consensus         3 ~WT~eE~~~F~~~~~~yG-Kdf~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHc-ccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            599999999999999999 689999985 6999999999887543

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=5.4e-05  Score=52.34  Aligned_cols=47  Identities=21%  Similarity=0.381  Sum_probs=40.5

Q ss_pred             cCCCChHHHHHHHHHHHHcC--------CC-cccccc-ccCCCCHHHHHHHHHHHhh
Q 023744           64 HRAFTPEEDEMIIRAHARFG--------NK-WATIAR-LLNGRTDNAIKNHWNSTLK  110 (278)
Q Consensus        64 k~~WT~EED~~Ll~~v~~~G--------~k-W~~IA~-~lpgRT~~~~knRw~~~lk  110 (278)
                      +.+||.|||+.|++.|+++.        |. |..+++ .++.+|..+.|+||.+.||
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            46899999999999999874        22 999985 6899999999999988775

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.34  E-value=0.00013  Score=47.44  Aligned_cols=45  Identities=22%  Similarity=0.485  Sum_probs=39.8

Q ss_pred             cCCCChHHHHHHHHHHHHcCCCcccccccc---CCCCHHHHHHHHHHH
Q 023744           64 HRAFTPEEDEMIIRAHARFGNKWATIARLL---NGRTDNAIKNHWNST  108 (278)
Q Consensus        64 k~~WT~EED~~Ll~~v~~~G~kW~~IA~~l---pgRT~~~~knRw~~~  108 (278)
                      +..||+||-.-|+..|+++|+.|..|--.+   +||+..++..+|..+
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            357999999999999999999999997543   799999999999765

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00011  Score=50.71  Aligned_cols=48  Identities=23%  Similarity=0.407  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC------C--hHHHhh-hCCCCCcccccccccccCC
Q 023744           12 KGPWSPEEDEALQQLVQKHGPR------N--WSLISK-SIPGRSGKSCRLRWCNQLS   59 (278)
Q Consensus        12 kg~WT~EED~~L~~lV~kyG~~------n--W~~Ia~-~lp~Rs~kqcr~Rw~n~L~   59 (278)
                      +-+||.|||+.|+++|+.+...      |  |..+++ .++.++-.+-++||.+.|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            4589999999999999998422      2  999985 6799999999999998875

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.07  E-value=0.00048  Score=48.13  Aligned_cols=49  Identities=18%  Similarity=0.192  Sum_probs=40.6

Q ss_pred             ccCCCChHHHHHHHHHHHHcCCCcc---ccccc--cCCCCHHHHHHHHHHHhhh
Q 023744           63 EHRAFTPEEDEMIIRAHARFGNKWA---TIARL--LNGRTDNAIKNHWNSTLKR  111 (278)
Q Consensus        63 ~k~~WT~EED~~Ll~~v~~~G~kW~---~IA~~--lpgRT~~~~knRw~~~lk~  111 (278)
                      .+-.||+||.+.+++++..+|.+|.   .|...  ++|+|..+|+.|.+.+.-+
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~   59 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVA   59 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence            3567999999999999999999885   56554  6899999999998776543

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.46  E-value=0.00082  Score=46.89  Aligned_cols=48  Identities=10%  Similarity=0.070  Sum_probs=38.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCh--HHHhhhC--CCCCccccccccccc
Q 023744           10 RIKGPWSPEEDEALQQLVQKHGPRNW--SLISKSI--PGRSGKSCRLRWCNQ   57 (278)
Q Consensus        10 ~~kg~WT~EED~~L~~lV~kyG~~nW--~~Ia~~l--p~Rs~kqcr~Rw~n~   57 (278)
                      ..+-.||+||.+.+.++|.++|...|  ..|...|  +++|..+|+-|...|
T Consensus         5 k~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            34557999999999999999996544  5777664  888999998776554

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.44  E-value=0.0048  Score=39.81  Aligned_cols=42  Identities=24%  Similarity=0.332  Sum_probs=35.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHhhhC---CCCCccccccccc
Q 023744           13 GPWSPEEDEALQQLVQKHGPRNWSLISKSI---PGRSGKSCRLRWC   55 (278)
Q Consensus        13 g~WT~EED~~L~~lV~kyG~~nW~~Ia~~l---p~Rs~kqcr~Rw~   55 (278)
                      ..||.||-.-|...|+++| .+|..|--.+   +||+......+|.
T Consensus         2 knft~eEv~YL~~GVK~~G-~~WNsILWs~PF~~GR~~vdLA~Ky~   46 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYH   46 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhc-chhhhhhhccCCCCCchhhHHHHHHH
Confidence            4699999999999999999 5699998776   6888877776664

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.25  E-value=0.027  Score=39.43  Aligned_cols=51  Identities=18%  Similarity=0.353  Sum_probs=43.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC---CCChHHHhhhCCCCCcccccccccccCCC
Q 023744           10 RIKGPWSPEEDEALQQLVQKHG---PRNWSLISKSIPGRSGKSCRLRWCNQLSP   60 (278)
Q Consensus        10 ~~kg~WT~EED~~L~~lV~kyG---~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p   60 (278)
                      ..-+.|+++|-.+|..++....   ++-|..||..+..|+...|...|...+..
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCccc
Confidence            3456899999999999998763   34599999999999999999999877643

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.13  E-value=0.026  Score=39.54  Aligned_cols=50  Identities=12%  Similarity=0.281  Sum_probs=42.2

Q ss_pred             cccCCCChHHHHHHHHHHHHcCCC----ccccccccCCCCHHHHHHHHHHHhhh
Q 023744           62 VEHRAFTPEEDEMIIRAHARFGNK----WATIARLLNGRTDNAIKNHWNSTLKR  111 (278)
Q Consensus        62 i~k~~WT~EED~~Ll~~v~~~G~k----W~~IA~~lpgRT~~~~knRw~~~lk~  111 (278)
                      ...+.|+++|-++|-.++..+-..    |..+|-.+..|++..|..+|+..++.
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCccc
Confidence            345689999999999999887643    99999999999999999999765443

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.67  E-value=0.16  Score=33.44  Aligned_cols=48  Identities=21%  Similarity=0.438  Sum_probs=40.2

Q ss_pred             CCChHHHHHHHHHHHHcCC-CccccccccCCCCHHHHHHHHHHHhhhhhh
Q 023744           66 AFTPEEDEMIIRAHARFGN-KWATIARLLNGRTDNAIKNHWNSTLKRKCS  114 (278)
Q Consensus        66 ~WT~EED~~Ll~~v~~~G~-kW~~IA~~lpgRT~~~~knRw~~~lk~k~~  114 (278)
                      .|+.-|=..++++..+||. +-..||..|.|+|...|+... ..|=+++.
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~-~vFw~ry~   49 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYN-AVFWERCT   49 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHH-HHHHHHGG
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHH-HHHHHHHH
Confidence            4999999999999999995 799999999999999988654 55545544

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.14  E-value=0.23  Score=38.43  Aligned_cols=53  Identities=15%  Similarity=0.293  Sum_probs=41.4

Q ss_pred             ccccCCCChHHHHHHHHHHHHcCC-C---cccccc------------ccCCCCHHHHHHHHHHHhhhhh
Q 023744           61 QVEHRAFTPEEDEMIIRAHARFGN-K---WATIAR------------LLNGRTDNAIKNHWNSTLKRKC  113 (278)
Q Consensus        61 ~i~k~~WT~EED~~Ll~~v~~~G~-k---W~~IA~------------~lpgRT~~~~knRw~~~lk~k~  113 (278)
                      ..++..+|+|||.-|+-++.+||- +   |..|-.            .|..||+..|..|-+.+++-.-
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~  114 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIE  114 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHH
Confidence            445567999999999999999994 4   877742            2357999999999987776543

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.10  E-value=0.39  Score=31.45  Aligned_cols=39  Identities=15%  Similarity=0.307  Sum_probs=34.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccc
Q 023744           14 PWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRL   52 (278)
Q Consensus        14 ~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~   52 (278)
                      .|+.-|=..++.+..+||..+-..||..|.+++...++.
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~   39 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIE   39 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHH
Confidence            499999999999999999889999999998888877643