Citrus Sinensis ID: 023778

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MFQVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccEEEEcccccccccccHHHHHHHHHHHHHcccccEEEEcccEEEccccccccccccccHHHHHHHHHHHcccEEEEEcccccccccccccccccEEcccccHHHHHHHHHccccccccccHHHHHHccccEEEccccccccccEEEEccccccccccccccccEEEEEEEccEEEEEEEcccccccccHHHHHHHHHHHcccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccEEEEEEHcccHHHHHHHHHHHHHHcccccHHHHHEEEcccHHHHHHHHHHHHHHccccEEEEcccEEEEEEccccccccEccccHHHHHHHHcccccccEEEEEEEEEEcccccEEEccccccHHHHHHHHHHHcccEEEEEEccccEEcccccccccccccccccHHHHHHHHHHcccccccccHHEHHHccccEEEEEccccccccEEEEcccccccHHHHHHcccEEEEEEcccEEEEEEEccccccccHHHHHHHHHHHHccccEEEEEc
Coil and Loop (DISEMBL)
MFQVRNYVSELSYEFIRSTYNFlsnvdsghatesfTDFVVGHGELWSAQMLAAVVRKNgidckwmdtrevlivnptssnqvdpdfseSEKRLEKWfsqspsntiiatgfiastpdnipttlkrdgsdFSAAIMGALLRAHQVtiwtdvdgvysadprkVSEAVILRTLSYQEAWEMSYFganvlhprtiipvmrydipIVIRNifnlsvpgimicrppvdenedeqiidspvkgfatiDNLALVNvegtgmagvpgtaNAIFGAVKDVGANVIMISQ
Flexible Loop (DISEMBL)
MFQVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLivnptssnqvdpdFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ
Low Complexity Region (SEG)
MFQVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ
Disordered region (IsUnstruct)
***VRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVN***************************NTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMI**
Disordered Region (DISOPRED)
MFQ*RNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVD*****QIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ
Disordered Region (DISEMBL)
MFQVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN**************KWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ
Disordered Region (DISPRO)
MFQVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFQVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	277	2.2.26 [Sep-21-2011]
P37142	921	Bifunctional aspartokinas	N/A	no	0.978	0.294	0.782	1e-124
O81852	916	Bifunctional aspartokinas	yes	no	0.942	0.284	0.789	1e-124
Q9SA18	911	Bifunctional aspartokinas	no	no	0.895	0.272	0.84	1e-124
P49079	920	Bifunctional aspartokinas	N/A	no	0.891	0.268	0.808	1e-120
P49080	917	Bifunctional aspartokinas	N/A	no	0.891	0.269	0.78	1e-116
P27725	819	Bifunctional aspartokinas	N/A	no	0.844	0.285	0.372	3e-42
P00561	820	Bifunctional aspartokinas	N/A	no	0.859	0.290	0.382	6e-42
Q57991	473	Probable aspartokinase OS	yes	no	0.859	0.503	0.398	1e-40
P57290	816	Bifunctional aspartokinas	yes	no	0.873	0.296	0.335	2e-38
Q8K9U9	814	Bifunctional aspartokinas	yes	no	0.898	0.305	0.348	6e-36

>sp|P37142|AKH_DAUCA Bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic (Fragment) OS=Daucus carota PE=1 SV=1

 Score =  444 bits (1143), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/271 (78%), Positives = 234/271 (86%)

Query: 7   YVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMD 66
           +++ L ++ I       +   +GHATESF+DFVVGHGELWSAQ+L+ V+RKNG DC WMD
Sbjct: 178 FLTRLQHDVITLKAMLRAIYIAGHATESFSDFVVGHGELWSAQLLSFVIRKNGGDCNWMD 237

Query: 67  TREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126
           TR+VL+VNP  SNQVDPD+ ESEKRLEKWFS +   TI+ATGFIASTP NIPTTLKRDGS
Sbjct: 238 TRDVLVVNPAGSNQVDPDYLESEKRLEKWFSSNQCQTIVATGFIASTPQNIPTTLKRDGS 297

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           DFSAAIMGALLRA QVTIWTDV+GVYSADPRKVSEAV+L+TLSYQEAWEMSYFGANVLHP
Sbjct: 298 DFSAAIMGALLRAGQVTIWTDVNGVYSADPRKVSEAVVLKTLSYQEAWEMSYFGANVLHP 357

Query: 187 RTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNV 246
           RTI PVMRYDIPIVIRNIFNLS PG MICR  V E ED   ++S VKGFATIDNLAL+NV
Sbjct: 358 RTINPVMRYDIPIVIRNIFNLSAPGTMICRESVGETEDGLKLESHVKGFATIDNLALINV 417

Query: 247 EGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
           EGTGMAGVPGTA AIFGAVKDVGANVIMISQ
Sbjct: 418 EGTGMAGVPGTATAIFGAVKDVGANVIMISQ 448

Daucus carota (taxid: 4039)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3

>sp|O81852|AKH2_ARATH Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH2 PE=1 SV=1

 Score =  444 bits (1142), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/271 (78%), Positives = 239/271 (88%), Gaps = 10/271 (3%)

Query: 15  FIRSTYNFLSNVDS--------GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMD 66
           F+   +N +SN+ +        GHA+ESF+DFV GHGELWSAQML+ VVRK G++CKWMD
Sbjct: 175 FLSHLHNDISNLKAMLRAIYIAGHASESFSDFVAGHGELWSAQMLSYVVRKTGLECKWMD 234

Query: 67  TREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126
           TR+VLIVNPTSSNQVDPDF ESEKRL+KWFS +PS  IIATGFIASTP NIPTTLKRDGS
Sbjct: 235 TRDVLIVNPTSSNQVDPDFGESEKRLDKWFSLNPSKIIIATGFIASTPQNIPTTLKRDGS 294

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           DFSAAIMGALLRA QVTIWTDVDGVYSADPRKV+EAVIL+TLSYQEAWEMSYFGANVLHP
Sbjct: 295 DFSAAIMGALLRARQVTIWTDVDGVYSADPRKVNEAVILQTLSYQEAWEMSYFGANVLHP 354

Query: 187 RTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNV 246
           RTIIPVMRY+IPIVIRNIFNLS PG +IC+PP  E++ +  + +PVKGFATIDNLAL+NV
Sbjct: 355 RTIIPVMRYNIPIVIRNIFNLSAPGTIICQPP--EDDYDLKLTTPVKGFATIDNLALINV 412

Query: 247 EGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
           EGTGMAGVPGTA+ IFG VKDVGANVIMISQ
Sbjct: 413 EGTGMAGVPGTASDIFGCVKDVGANVIMISQ 443

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9SA18|AKH1_ARATH Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH1 PE=1 SV=1

 Score =  443 bits (1140), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/250 (84%), Positives = 230/250 (92%), Gaps = 2/250 (0%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESF+DFVVGHGELWSAQMLAAVVRK+G+DC WMD R+VL+V PTSSNQVDPDF E
Sbjct: 191 AGHATESFSDFVVGHGELWSAQMLAAVVRKSGLDCTWMDARDVLVVIPTSSNQVDPDFVE 250

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SEKRLEKWF+Q+ +  IIATGFIASTP NIPTTLKRDGSDFSAAIM AL R+HQ+TIWTD
Sbjct: 251 SEKRLEKWFTQNSAKIIIATGFIASTPQNIPTTLKRDGSDFSAAIMSALFRSHQLTIWTD 310

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAV+L+TLSYQEAWEMSYFGANVLHPRTIIPVM+YDIPIVIRNIFNL
Sbjct: 311 VDGVYSADPRKVSEAVVLKTLSYQEAWEMSYFGANVLHPRTIIPVMKYDIPIVIRNIFNL 370

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG MICR    ++ED   +D+PVKGFATIDNLALVNVEGTGMAGVPGTA+AIF AVK+
Sbjct: 371 SAPGTMICRQI--DDEDGFKLDAPVKGFATIDNLALVNVEGTGMAGVPGTASAIFSAVKE 428

Query: 268 VGANVIMISQ 277
           VGANVIMISQ
Sbjct: 429 VGANVIMISQ 438

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P49079|AKH1_MAIZE Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic OS=Zea mays GN=AKHSDH1 PE=2 SV=1

 Score =  430 bits (1106), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 202/250 (80%), Positives = 227/250 (90%), Gaps = 3/250 (1%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESF+DFVVGHGELWSAQML+  ++K+G  C WMDTREVL+VNP+ +NQVDPD+ E
Sbjct: 201 AGHATESFSDFVVGHGELWSAQMLSYAIQKSGTPCSWMDTREVLVVNPSGANQVDPDYLE 260

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SEKRLEKWFS+ P+ TIIATGFIASTP+NIPTTLKRDGSDFSAAI+G+L++A QVTIWTD
Sbjct: 261 SEKRLEKWFSRCPAETIIATGFIASTPENIPTTLKRDGSDFSAAIIGSLVKARQVTIWTD 320

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGV+SADPRKVSEAVIL TLSYQEAWEMSYFGANVLHPRTIIPVM+Y+IPIVIRNIFN 
Sbjct: 321 VDGVFSADPRKVSEAVILSTLSYQEAWEMSYFGANVLHPRTIIPVMKYNIPIVIRNIFNT 380

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG MIC+ P +EN D   +++ VK FATID LALVNVEGTGMAGVPGTANAIFGAVKD
Sbjct: 381 SAPGTMICQQPANENGD---LEACVKAFATIDKLALVNVEGTGMAGVPGTANAIFGAVKD 437

Query: 268 VGANVIMISQ 277
           VGANVIMISQ
Sbjct: 438 VGANVIMISQ 447

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P49080|AKH2_MAIZE Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Zea mays GN=AKHSDH2 PE=2 SV=1

 Score =  416 bits (1070), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 195/250 (78%), Positives = 221/250 (88%), Gaps = 3/250 (1%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESF+DFVVGHGELWSAQML+  ++K+G  C WMDTREVL+V P+  NQVDPD+ E
Sbjct: 198 AGHATESFSDFVVGHGELWSAQMLSYAIKKSGAPCSWMDTREVLVVTPSGCNQVDPDYLE 257

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
            EKRL+KWFS+ P+  I+ATGFIAST  NIPTTLKRDGSDFSAAI+G+L+RA QVTIWTD
Sbjct: 258 CEKRLQKWFSRQPAEIIVATGFIASTAGNIPTTLKRDGSDFSAAIVGSLVRARQVTIWTD 317

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGV+SADPRKVSEAVIL TLSYQEAWEMSYFGANVLHPRTIIPVM+ +IPIVIRN+FNL
Sbjct: 318 VDGVFSADPRKVSEAVILSTLSYQEAWEMSYFGANVLHPRTIIPVMKDNIPIVIRNMFNL 377

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG MIC+ P +EN D   +D+ VK FAT+DNLALVNVEGTGMAGVPGTA+AIF AVKD
Sbjct: 378 SAPGTMICKQPANENGD---LDACVKSFATVDNLALVNVEGTGMAGVPGTASAIFSAVKD 434

Query: 268 VGANVIMISQ 277
           VGANVIMISQ
Sbjct: 435 VGANVIMISQ 444

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P27725|AK1H_SERMA Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Serratia marcescens GN=thrA PE=3 SV=1

 Score =  172 bits (435), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 95/255 (37%), Positives = 137/255 (53%), Gaps = 21/255 (8%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G   +S    ++  GE  S  ++  V R  G          V ++NP         + ES
Sbjct: 112 GQCPDSVNAAIICRGEKLSIAIMEGVFRAKGY--------PVTVINPVEKLLAQGHYLES 163

Query: 89  -----EKRLEKWFSQSPSNTII-ATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQV 142
                E  L    +  P++ I+   GF A         L R+GSD+SAA++ A LRA   
Sbjct: 164 TVDIAESTLRIAAAAIPADHIVLMAGFTAGNDKGELVVLGRNGSDYSAAVLAACLRADCC 223

Query: 143 TIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIR 202
            IWTDVDGVY+ DPR V +A +L+++SYQEA E+SYFGA VLHPRTI P+ ++ IP +I+
Sbjct: 224 EIWTDVDGVYTCDPRTVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIK 283

Query: 203 NIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIF 262
           N  N   PG +I +   D        D PVKG   ++N+A++NV G GM G+ G A  +F
Sbjct: 284 NTSNPQAPGTLIGKDSTDA-------DMPVKGITNLNNMAMINVSGPGMKGMVGMAARVF 336

Query: 263 GAVKDVGANVIMISQ 277
             +   G +V++I+Q
Sbjct: 337 AVMSRAGISVVLITQ 351

Serratia marcescens (taxid: 615)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P00561|AK1H_ECOLI Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Escherichia coli (strain K12) GN=thrA PE=1 SV=2

 Score =  171 bits (433), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 96/251 (38%), Positives = 147/251 (58%), Gaps = 13/251 (5%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMD-TREVLIVNPTSSNQVDPDFSE 87
           G   +S    ++  GE  S  ++A V+   G +   +D   ++L V     + VD   +E
Sbjct: 112 GQCPDSINAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVD--IAE 169

Query: 88  SEKRLEKWFSQSPSN-TIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
           S +R+    S+ P++  ++  GF A         L R+GSD+SAA++ A LRA    IWT
Sbjct: 170 STRRIAA--SRIPADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWT 227

Query: 147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFN 206
           DVDGVY+ DPR+V +A +L+++SYQEA E+SYFGA VLHPRTI P+ ++ IP +I+N  N
Sbjct: 228 DVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGN 287

Query: 207 LSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVK 266
              PG +I       +EDE     PVKG + ++N+A+ +V G GM G+ G A  +F A+ 
Sbjct: 288 PQAPGTLI---GASRDEDEL----PVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMS 340

Query: 267 DVGANVIMISQ 277
               +V++I+Q
Sbjct: 341 RARISVVLITQ 351

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|Q57991|AK_METJA Probable aspartokinase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0571 PE=1 SV=1

 Score =  166 bits (421), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/251 (39%), Positives = 138/251 (54%), Gaps = 13/251 (5%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G  T    D+++  GE  S+ +L+  +R  G     ++  E  I+   +         E 
Sbjct: 115 GELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEV 174

Query: 89  EKRLEKWFSQS--PSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
           ++RL     +   P    + TGFI +T +   TTL R GSD+SAA++G  L A  + IWT
Sbjct: 175 KERLLPLLKEGIIP----VVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWT 230

Query: 147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFN 206
           DV GVY+ DPR V  A  +  LSY EA E++YFGA VLHPRTI P M   IPI+++N F 
Sbjct: 231 DVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFE 290

Query: 207 LSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVK 266
               G +I         D ++ DS VK  +TI N+AL+N+ G GM GV GTA  IF A+ 
Sbjct: 291 PESEGTLITN-------DMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALG 343

Query: 267 DVGANVIMISQ 277
           +   NVI+ISQ
Sbjct: 344 EEEVNVILISQ 354

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 4

>sp|P57290|AKH_BUCAI Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=thrA PE=3 SV=1

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 91/271 (33%), Positives = 147/271 (54%), Gaps = 29/271 (10%)

Query: 20  YNFLSNVDSG-----HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVN 74
           +N L N+  G        ++    ++  GE+ S  ++ ++++    +        V I+N
Sbjct: 98  FNELKNIIQGILLLKQCPDNIRAIIISRGEILSVFIMKSILQSKNYN--------VTIIN 149

Query: 75  PTSS------NQVDP--DFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126
           P  +      N +D   D SES+K ++   + + SN I+  GFIA   D     L R+GS
Sbjct: 150 PVKNLVAIGDNYLDSTVDISESKKNIQNM-NINQSNIILMAGFIAGNKDKKLVVLGRNGS 208

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           D+SAA++ A L A+   IWTDVDGV+++DPRKV  A +L+++SYQEA E+SYFGA VLHP
Sbjct: 209 DYSAAVLAACLDANCCEIWTDVDGVFTSDPRKVPNARLLKSISYQEAMELSYFGAKVLHP 268

Query: 187 RTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNV 246
           RTI P+ ++ IP +I+N  N+   G +IC     E +        +KG   +D +A+ N+
Sbjct: 269 RTIEPIAQFKIPCLIKNTNNVKSIGTLICEQNCSEKD-------FLKGVTHLDEIAMFNI 321

Query: 247 EGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
            G  +  V    + IF  +      +++I+Q
Sbjct: 322 SGPHIKDVGSVISRIFTMMSRGNIKILLITQ 352

Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (taxid: 107806)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8K9U9|AKH_BUCAP Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=thrA PE=3 SV=1

 Score =  151 bits (381), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 144/281 (51%), Gaps = 32/281 (11%)

Query: 13  YEFIRST----YNFLSNVDSG-----HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCK 63
           YE  +ST    +N L  + +G        E     ++  GE+ S  ++  +++       
Sbjct: 86  YENTKSTIEIEFNKLKKIINGILLIKQCPEGIKPIIISRGEILSVDIMKNILQSR----- 140

Query: 64  WMDTREVLIVNPTSS-----NQVDP--DFSESEKRLEKWFSQSPSNTIIATGFIASTPDN 116
                EV I+NP ++     N +D   D  ES+KR++K  +    N I+  GFIA   + 
Sbjct: 141 ---NHEVTILNPVTNLLSIGNYLDSTIDIKESKKRIKK-INIDQKNIILMAGFIAGNKEG 196

Query: 117 IPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM 176
               L R+GSD+SAAI+ + L A    IWTDVDGV +ADPR VS   +L  +SYQEA E+
Sbjct: 197 ELVVLGRNGSDYSAAILASCLNAKCCEIWTDVDGVLTADPRIVSNTYLLDYISYQEAMEL 256

Query: 177 SYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFA 236
           SYFGA VLHPRTI P+ ++ IP VI+N  N    G  I +    EN      D+ +KG  
Sbjct: 257 SYFGAKVLHPRTIEPISQFQIPCVIKNTNNTESKGTWIGK----ENNPS---DNSLKGVT 309

Query: 237 TIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
            +DN+ + N+ G+ +     T   IF  +      +I+I Q
Sbjct: 310 YLDNIIMFNISGSCLKDSGNTIARIFTILSRESMKIILIIQ 350

Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) (taxid: 198804)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
255569084	920	aspartate kinase, putative [Ricinus comm	0.902	0.271	0.884	1e-129
224145045	829	predicted protein [Populus trichocarpa]	0.895	0.299	0.872	1e-128
224136137	843	predicted protein [Populus trichocarpa]	0.895	0.294	0.864	1e-126
147856217	841	hypothetical protein VITISV_034964 [Viti	0.931	0.306	0.818	1e-125
297740938	871	unnamed protein product [Vitis vinifera]	0.931	0.296	0.818	1e-125
225460063	918	PREDICTED: bifunctional aspartokinase/ho	0.931	0.281	0.818	1e-125
351721667	916	aspartokinase-homoserine dehydrogenase [	0.902	0.272	0.848	1e-124
297846486	911	AK-HSDH I [Arabidopsis lyrata subsp. lyr	0.895	0.272	0.848	1e-124
357518663	909	Bifunctional aspartokinase/homoserine de	0.902	0.275	0.848	1e-124
357518661	917	Bifunctional aspartokinase/homoserine de	0.898	0.271	0.851	1e-123

>gi|255569084|ref|XP_002525511.1| aspartate kinase, putative [Ricinus communis] gi|223535190|gb|EEF36869.1| aspartate kinase, putative [Ricinus communis]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/250 (88%), Positives = 234/250 (93%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESFTDFVVGHGELWSAQML+ VVRK+G DCKWMDTREVLIVNPTSSNQVDPDF E
Sbjct: 198 AGHATESFTDFVVGHGELWSAQMLSYVVRKSGQDCKWMDTREVLIVNPTSSNQVDPDFVE 257

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SEKRLE+WF++ P  TI+ATGFIASTP NIPTTLKRDGSDFSAAIMGALLRA QVTIWTD
Sbjct: 258 SEKRLEEWFAKHPCKTIVATGFIASTPQNIPTTLKRDGSDFSAAIMGALLRARQVTIWTD 317

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPI+IRNIFNL
Sbjct: 318 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIMIRNIFNL 377

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           + PG MICR   DENED Q ++S VKGFATIDN+ALVNVEGTGMAGVPGTA+AIFGAVKD
Sbjct: 378 ASPGTMICRTSTDENEDCQKLESFVKGFATIDNVALVNVEGTGMAGVPGTASAIFGAVKD 437

Query: 268 VGANVIMISQ 277
           VGANVIMISQ
Sbjct: 438 VGANVIMISQ 447

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145045|ref|XP_002325506.1| predicted protein [Populus trichocarpa] gi|222862381|gb|EEE99887.1| predicted protein [Populus trichocarpa]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/250 (87%), Positives = 236/250 (94%), Gaps = 2/250 (0%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESF+DFVVGHGELW+AQML+ VVRKNG+DC+WMDTREVLIVNP+ SNQVDPDF E
Sbjct: 109 AGHATESFSDFVVGHGELWTAQMLSYVVRKNGLDCEWMDTREVLIVNPSGSNQVDPDFVE 168

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SEKRLE+WFS+ PS TI+ATGFIASTP NIPTTLKRDGSDFSAAIMGA++RA QVTIWTD
Sbjct: 169 SEKRLEEWFSRHPSKTIVATGFIASTPQNIPTTLKRDGSDFSAAIMGAMVRARQVTIWTD 228

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI+PVMRYDIPI+IRNIFNL
Sbjct: 229 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTILPVMRYDIPIMIRNIFNL 288

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG MICRP   ENED Q ++SPVKGFATIDN+ALVNVEGTGMAGVPGTA+AIFGAVKD
Sbjct: 289 SAPGTMICRPA--ENEDGQKLESPVKGFATIDNVALVNVEGTGMAGVPGTASAIFGAVKD 346

Query: 268 VGANVIMISQ 277
           VGANVIMISQ
Sbjct: 347 VGANVIMISQ 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136137|ref|XP_002327390.1| predicted protein [Populus trichocarpa] gi|222835760|gb|EEE74195.1| predicted protein [Populus trichocarpa]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/250 (86%), Positives = 235/250 (94%), Gaps = 2/250 (0%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESF+DFVVGHGELWSAQML+ VVRKNG+DC+WMDTREVLIVNP+ SNQVDPDF+E
Sbjct: 123 AGHATESFSDFVVGHGELWSAQMLSYVVRKNGLDCEWMDTREVLIVNPSGSNQVDPDFAE 182

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SEKRLE+WFS+ PS TI+ATGFIAST  NIPTTLKRDGSDFSAAIMGAL+RA QVTIWTD
Sbjct: 183 SEKRLEEWFSRHPSKTIVATGFIASTQQNIPTTLKRDGSDFSAAIMGALVRARQVTIWTD 242

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI+PVMRYDIPI+IRN+FNL
Sbjct: 243 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIMPVMRYDIPILIRNVFNL 302

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG MICRP   ENED Q ++S VKGFATIDN+ALVNVEGTGMAGVPGTA+AIFGAVKD
Sbjct: 303 SAPGTMICRPA--ENEDGQKLESLVKGFATIDNVALVNVEGTGMAGVPGTASAIFGAVKD 360

Query: 268 VGANVIMISQ 277
           VGANVI+ISQ
Sbjct: 361 VGANVIVISQ 370

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856217|emb|CAN82421.1| hypothetical protein VITISV_034964 [Vitis vinifera]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/264 (81%), Positives = 235/264 (89%), Gaps = 6/264 (2%)

Query: 14  EFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIV 73
           E +R+ Y       +GHA+E F+D +VGHGELWSAQML++VVRK GIDCKWMDTR+VLIV
Sbjct: 111 EMLRAIYI------AGHASELFSDIIVGHGELWSAQMLSSVVRKKGIDCKWMDTRDVLIV 164

Query: 74  NPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIM 133
           NPTS+NQVDPDF ESE RLEKWF Q+PS TI+ATGFIASTP NIPTTLKRDGSDFSAAIM
Sbjct: 165 NPTSANQVDPDFVESEMRLEKWFFQNPSKTIVATGFIASTPQNIPTTLKRDGSDFSAAIM 224

Query: 134 GALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVM 193
           GAL RA QVTIWTDVDGVYSADPRKV+EAVIL  LSYQEAWEMSYFGANVLHPRTIIPVM
Sbjct: 225 GALFRARQVTIWTDVDGVYSADPRKVAEAVILNQLSYQEAWEMSYFGANVLHPRTIIPVM 284

Query: 194 RYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAG 253
           +Y IPIVIRNIFNLS PG MICRP VDENE  Q ++SPVKGFATIDN+AL+NVEGTGMAG
Sbjct: 285 QYGIPIVIRNIFNLSAPGTMICRPSVDENEGNQRLESPVKGFATIDNVALINVEGTGMAG 344

Query: 254 VPGTANAIFGAVKDVGANVIMISQ 277
           VPGTA+AIF AVKDVGANVIMISQ
Sbjct: 345 VPGTASAIFSAVKDVGANVIMISQ 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740938|emb|CBI31250.3| unnamed protein product [Vitis vinifera]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/264 (81%), Positives = 235/264 (89%), Gaps = 6/264 (2%)

Query: 14  EFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIV 73
           E +R+ Y       +GHA+E F+D +VGHGELWSAQML++VVRK GIDCKWMDTR+VLIV
Sbjct: 141 EMLRAIYI------AGHASELFSDIIVGHGELWSAQMLSSVVRKKGIDCKWMDTRDVLIV 194

Query: 74  NPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIM 133
           NPTS+NQVDPDF ESE RLEKWF Q+PS TI+ATGFIASTP NIPTTLKRDGSDFSAAIM
Sbjct: 195 NPTSANQVDPDFVESEMRLEKWFFQNPSKTIVATGFIASTPQNIPTTLKRDGSDFSAAIM 254

Query: 134 GALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVM 193
           GAL RA QVTIWTDVDGVYSADPRKV+EAVIL  LSYQEAWEMSYFGANVLHPRTIIPVM
Sbjct: 255 GALFRARQVTIWTDVDGVYSADPRKVAEAVILNQLSYQEAWEMSYFGANVLHPRTIIPVM 314

Query: 194 RYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAG 253
           +Y IPIVIRNIFNLS PG MICRP VDENE  Q ++SPVKGFATIDN+AL+NVEGTGMAG
Sbjct: 315 QYGIPIVIRNIFNLSAPGTMICRPSVDENEGNQRLESPVKGFATIDNVALINVEGTGMAG 374

Query: 254 VPGTANAIFGAVKDVGANVIMISQ 277
           VPGTA+AIF AVKDVGANVIMISQ
Sbjct: 375 VPGTASAIFSAVKDVGANVIMISQ 398

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460063|ref|XP_002271525.1| PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic-like [Vitis vinifera]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/264 (81%), Positives = 235/264 (89%), Gaps = 6/264 (2%)

Query: 14  EFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIV 73
           E +R+ Y       +GHA+E F+D +VGHGELWSAQML++VVRK GIDCKWMDTR+VLIV
Sbjct: 188 EMLRAIYI------AGHASELFSDIIVGHGELWSAQMLSSVVRKKGIDCKWMDTRDVLIV 241

Query: 74  NPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIM 133
           NPTS+NQVDPDF ESE RLEKWF Q+PS TI+ATGFIASTP NIPTTLKRDGSDFSAAIM
Sbjct: 242 NPTSANQVDPDFVESEMRLEKWFFQNPSKTIVATGFIASTPQNIPTTLKRDGSDFSAAIM 301

Query: 134 GALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVM 193
           GAL RA QVTIWTDVDGVYSADPRKV+EAVIL  LSYQEAWEMSYFGANVLHPRTIIPVM
Sbjct: 302 GALFRARQVTIWTDVDGVYSADPRKVAEAVILNQLSYQEAWEMSYFGANVLHPRTIIPVM 361

Query: 194 RYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAG 253
           +Y IPIVIRNIFNLS PG MICRP VDENE  Q ++SPVKGFATIDN+AL+NVEGTGMAG
Sbjct: 362 QYGIPIVIRNIFNLSAPGTMICRPSVDENEGNQRLESPVKGFATIDNVALINVEGTGMAG 421

Query: 254 VPGTANAIFGAVKDVGANVIMISQ 277
           VPGTA+AIF AVKDVGANVIMISQ
Sbjct: 422 VPGTASAIFSAVKDVGANVIMISQ 445

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721667|ref|NP_001237473.1| aspartokinase-homoserine dehydrogenase [Glycine max] gi|2970447|gb|AAC05981.1| aspartokinase-homoserine dehydrogenase [Glycine max]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/250 (84%), Positives = 229/250 (91%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESFTDFVVGHGELWSAQML+ V+RKNG DCKWMDTR+VLIVNPT SNQVDPD+ E
Sbjct: 194 AGHATESFTDFVVGHGELWSAQMLSLVIRKNGTDCKWMDTRDVLIVNPTGSNQVDPDYLE 253

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SE+RLEKW+S +P   IIATGFIASTP NIPTTLKRDGSDFSAAIMGAL +A QVTIWTD
Sbjct: 254 SEQRLEKWYSLNPCKVIIATGFIASTPQNIPTTLKRDGSDFSAAIMGALFKARQVTIWTD 313

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAVIL+TLSYQEAWEMSYFGANVLHPRTIIPVMRY IPI+IRNIFNL
Sbjct: 314 VDGVYSADPRKVSEAVILKTLSYQEAWEMSYFGANVLHPRTIIPVMRYGIPIMIRNIFNL 373

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG  IC P V+++ED Q + + VKGFATIDNLALVNVEGTGMAGVPGTA+AIFGAVKD
Sbjct: 374 SAPGTKICHPSVNDHEDSQNLQNFVKGFATIDNLALVNVEGTGMAGVPGTASAIFGAVKD 433

Query: 268 VGANVIMISQ 277
           VGANVIMISQ
Sbjct: 434 VGANVIMISQ 443

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846486|ref|XP_002891124.1| AK-HSDH I [Arabidopsis lyrata subsp. lyrata] gi|297336966|gb|EFH67383.1| AK-HSDH I [Arabidopsis lyrata subsp. lyrata]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/250 (84%), Positives = 232/250 (92%), Gaps = 2/250 (0%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESF+DFVVGHGELWSAQMLAAVVRK+G+DC WMD R+VL+V+PTSSNQVDPDF E
Sbjct: 191 AGHATESFSDFVVGHGELWSAQMLAAVVRKSGLDCTWMDARDVLVVSPTSSNQVDPDFVE 250

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SEKRLEKWF+Q+ +  IIATGFIASTP NIPTTLKRDGSDFSAAIMGAL R+HQ+TIWTD
Sbjct: 251 SEKRLEKWFTQNSAKIIIATGFIASTPQNIPTTLKRDGSDFSAAIMGALFRSHQLTIWTD 310

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAV+L+TLSYQEAWEMSYFGANVLHPRTIIPVM+YDIPIVIRNIFNL
Sbjct: 311 VDGVYSADPRKVSEAVVLKTLSYQEAWEMSYFGANVLHPRTIIPVMKYDIPIVIRNIFNL 370

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG MICR    E+ED   +D+PVKGFATIDNLALVNVEGTGMAGVPGTA+AIF AVK+
Sbjct: 371 SAPGTMICRQI--EDEDGYKLDAPVKGFATIDNLALVNVEGTGMAGVPGTASAIFSAVKE 428

Query: 268 VGANVIMISQ 277
           VGANVIMISQ
Sbjct: 429 VGANVIMISQ 438

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518663|ref|XP_003629620.1| Bifunctional aspartokinase/homoserine dehydrogenase [Medicago truncatula] gi|355523642|gb|AET04096.1| Bifunctional aspartokinase/homoserine dehydrogenase [Medicago truncatula]

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/250 (84%), Positives = 228/250 (91%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GH TESFTDFVVGHGELWSAQML+ V+RKNGIDCKWMDTREVLIVNPTSSNQVDPD+ E
Sbjct: 187 AGHVTESFTDFVVGHGELWSAQMLSLVIRKNGIDCKWMDTREVLIVNPTSSNQVDPDYLE 246

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SE+RLEKW+S +P   IIATGFIASTP+NIPTTLKRDGSDFSAAIMG+L RA QVTIWTD
Sbjct: 247 SERRLEKWYSLNPCKVIIATGFIASTPENIPTTLKRDGSDFSAAIMGSLFRARQVTIWTD 306

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAVIL+TLSYQEAWEMSYFGANVLHPRTIIPVMRY IPI+IRNIFNL
Sbjct: 307 VDGVYSADPRKVSEAVILKTLSYQEAWEMSYFGANVLHPRTIIPVMRYGIPILIRNIFNL 366

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG  IC P V + ED+  + + VKGFATIDNLALVNVEGTGMAGVPGTA+AIF AVKD
Sbjct: 367 SAPGTKICHPVVSDYEDKSNLQNYVKGFATIDNLALVNVEGTGMAGVPGTASAIFAAVKD 426

Query: 268 VGANVIMISQ 277
           VGANVIMISQ
Sbjct: 427 VGANVIMISQ 436

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518661|ref|XP_003629619.1| Bifunctional aspartokinase/homoserine dehydrogenase [Medicago truncatula] gi|355523641|gb|AET04095.1| Bifunctional aspartokinase/homoserine dehydrogenase [Medicago truncatula]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/249 (85%), Positives = 227/249 (91%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           GH TESFTDFVVGHGELWSAQML+ V+RKNGIDCKWMDTREVLIVNPTSSNQVDPD+ ES
Sbjct: 196 GHVTESFTDFVVGHGELWSAQMLSLVIRKNGIDCKWMDTREVLIVNPTSSNQVDPDYLES 255

Query: 89  EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
           E+RLEKW+S +P   IIATGFIASTP+NIPTTLKRDGSDFSAAIMG+L RA QVTIWTDV
Sbjct: 256 ERRLEKWYSLNPCKVIIATGFIASTPENIPTTLKRDGSDFSAAIMGSLFRARQVTIWTDV 315

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
           DGVYSADPRKVSEAVIL+TLSYQEAWEMSYFGANVLHPRTIIPVMRY IPI+IRNIFNLS
Sbjct: 316 DGVYSADPRKVSEAVILKTLSYQEAWEMSYFGANVLHPRTIIPVMRYGIPILIRNIFNLS 375

Query: 209 VPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDV 268
            PG  IC P V + ED+  + + VKGFATIDNLALVNVEGTGMAGVPGTA+AIF AVKDV
Sbjct: 376 APGTKICHPVVSDYEDKSNLQNYVKGFATIDNLALVNVEGTGMAGVPGTASAIFAAVKDV 435

Query: 269 GANVIMISQ 277
           GANVIMISQ
Sbjct: 436 GANVIMISQ 444

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
TAIR|locus:2133995	916	AK-HSDH II "aspartate kinase-h	0.895	0.270	0.84	2.6e-111
TAIR|locus:2029564	911	AK-HSDH I "aspartate kinase-ho	0.895	0.272	0.844	5.3e-111
UNIPROTKB|P00561	820	thrA "ThrA" [Escherichia coli	0.942	0.318	0.364	8.2e-39
UNIPROTKB|Q9KPK3	825	VC_2364 "Aspartokinase I/homos	0.826	0.277	0.4	2.3e-38
TIGR_CMR|VC_2364	825	VC_2364 "aspartokinase I/homos	0.826	0.277	0.4	2.3e-38
TIGR_CMR|CPS_4291	825	CPS_4291 "aspartokinase/homose	0.826	0.277	0.393	1.3e-37
TIGR_CMR|SO_3415	822	SO_3415 "aspartokinase I/homos	0.830	0.279	0.376	2.2e-34
UNIPROTKB|P08660	449	lysC "LysC" [Escherichia coli	0.844	0.521	0.318	3.4e-29
UNIPROTKB|P00562	810	metL "MetL" [Escherichia coli	0.667	0.228	0.393	4.1e-29
UNIPROTKB|Q9KUW8	479	VC_0391 "Aspartokinase" [Vibri	0.624	0.361	0.365	3.3e-26

TAIR|locus:2133995 AK-HSDH II "aspartate kinase-homoserine dehydrogenase ii" [Arabidopsis thaliana (taxid:3702)]

 Score = 1099 (391.9 bits), Expect = 2.6e-111, P = 2.6e-111
 Identities = 210/250 (84%), Positives = 231/250 (92%)

Query:    28 SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
             +GHA+ESF+DFV GHGELWSAQML+ VVRK G++CKWMDTR+VLIVNPTSSNQVDPDF E
Sbjct:   196 AGHASESFSDFVAGHGELWSAQMLSYVVRKTGLECKWMDTRDVLIVNPTSSNQVDPDFGE 255

Query:    88 SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
             SEKRL+KWFS +PS  IIATGFIASTP NIPTTLKRDGSDFSAAIMGALLRA QVTIWTD
Sbjct:   256 SEKRLDKWFSLNPSKIIIATGFIASTPQNIPTTLKRDGSDFSAAIMGALLRARQVTIWTD 315

Query:   148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
             VDGVYSADPRKV+EAVIL+TLSYQEAWEMSYFGANVLHPRTIIPVMRY+IPIVIRNIFNL
Sbjct:   316 VDGVYSADPRKVNEAVILQTLSYQEAWEMSYFGANVLHPRTIIPVMRYNIPIVIRNIFNL 375

Query:   208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
             S PG +IC+PP D+ + +  + +PVKGFATIDNLAL+NVEGTGMAGVPGTA+ IFG VKD
Sbjct:   376 SAPGTIICQPPEDDYDLK--LTTPVKGFATIDNLALINVEGTGMAGVPGTASDIFGCVKD 433

Query:   268 VGANVIMISQ 277
             VGANVIMISQ
Sbjct:   434 VGANVIMISQ 443

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004072 "aspartate kinase activity" evidence=IEA;IDA

GO:0004412 "homoserine dehydrogenase activity" evidence=IEA;IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009067 "aspartate family amino acid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA

TAIR|locus:2029564 AK-HSDH I "aspartate kinase-homoserine dehydrogenase i" [Arabidopsis thaliana (taxid:3702)]

 Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
 Identities = 211/250 (84%), Positives = 231/250 (92%)

Query:    28 SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
             +GHATESF+DFVVGHGELWSAQMLAAVVRK+G+DC WMD R+VL+V PTSSNQVDPDF E
Sbjct:   191 AGHATESFSDFVVGHGELWSAQMLAAVVRKSGLDCTWMDARDVLVVIPTSSNQVDPDFVE 250

Query:    88 SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
             SEKRLEKWF+Q+ +  IIATGFIASTP NIPTTLKRDGSDFSAAIM AL R+HQ+TIWTD
Sbjct:   251 SEKRLEKWFTQNSAKIIIATGFIASTPQNIPTTLKRDGSDFSAAIMSALFRSHQLTIWTD 310

Query:   148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
             VDGVYSADPRKVSEAV+L+TLSYQEAWEMSYFGANVLHPRTIIPVM+YDIPIVIRNIFNL
Sbjct:   311 VDGVYSADPRKVSEAVVLKTLSYQEAWEMSYFGANVLHPRTIIPVMKYDIPIVIRNIFNL 370

Query:   208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
             S PG MICR  +D+ ED   +D+PVKGFATIDNLALVNVEGTGMAGVPGTA+AIF AVK+
Sbjct:   371 SAPGTMICRQ-IDD-EDGFKLDAPVKGFATIDNLALVNVEGTGMAGVPGTASAIFSAVKE 428

Query:   268 VGANVIMISQ 277
             VGANVIMISQ
Sbjct:   429 VGANVIMISQ 438

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004072 "aspartate kinase activity" evidence=IEA;IDA

GO:0004412 "homoserine dehydrogenase activity" evidence=IEA;IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009067 "aspartate family amino acid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

UNIPROTKB|P00561 thrA "ThrA" [Escherichia coli K-12 (taxid:83333)]

 Score = 423 (154.0 bits), Expect = 8.2e-39, P = 8.2e-39
 Identities = 101/277 (36%), Positives = 160/277 (57%)

Query:     3 QVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDC 62
             Q++ +V +  +  I+   + +S +  G   +S    ++  GE  S  ++A V+   G + 
Sbjct:    89 QLKTFVDQ-EFAQIKHVLHGISLL--GQCPDSINAALICRGEKMSIAIMAGVLEARGHNV 145

Query:    63 KWMDTREVLI-VNPTSSNQVDPDFSESEKRLEKWFSQSPSN-TIIATGFIASTPDNIPTT 120
               +D  E L+ V     + VD   +ES +R+    S+ P++  ++  GF A         
Sbjct:   146 TVIDPVEKLLAVGHYLESTVD--IAESTRRIAA--SRIPADHMVLMAGFTAGNEKGELVV 201

Query:   121 LKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG 180
             L R+GSD+SAA++ A LRA    IWTDVDGVY+ DPR+V +A +L+++SYQEA E+SYFG
Sbjct:   202 LGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFG 261

Query:   181 ANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDN 240
             A VLHPRTI P+ ++ IP +I+N  N   PG +I       +EDE     PVKG + ++N
Sbjct:   262 AKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLI---GASRDEDEL----PVKGISNLNN 314

Query:   241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
             +A+ +V G GM G+ G A  +F A+     +V++I+Q
Sbjct:   315 MAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQ 351

GO:0050661 "NADP binding" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009088 "threonine biosynthetic process" evidence=IEA

GO:0004412 "homoserine dehydrogenase activity" evidence=IEA;IDA

GO:0004072 "aspartate kinase activity" evidence=IEA;IDA

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=IEA;IDA

GO:0009090 "homoserine biosynthetic process" evidence=IDA

UNIPROTKB|Q9KPK3 VC_2364 "Aspartokinase I/homoserine dehydrogenase, threonine-sensitive" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 419 (152.6 bits), Expect = 2.3e-38, P = 2.3e-38
 Identities = 96/240 (40%), Positives = 138/240 (57%)

Query:    39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-QVDPDFSESEKRLEKWFS 97
             ++  GE  S Q++ AV+   G+    +D  + L+         VD + S    R +    
Sbjct:   128 IISKGERVSIQLMKAVMEAKGLPANLVDPVKYLLAKGDHLEAMVDVEISTQRFR-QAPLP 186

Query:    98 QSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPR 157
             Q   N  I  GF A         L R+GSD+SAA++ A LRA    IWTDVDGVY+ DPR
Sbjct:   187 QQHVN--IMPGFTAGNAQGELVCLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYNCDPR 244

Query:   158 KVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRP 217
              V +A +L++LSYQEA E+SYFGA+VLHP+TI P+ ++ IP +I+N FN    G +I + 
Sbjct:   245 LVDDARLLKSLSYQEAMELSYFGASVLHPKTIAPIAQFQIPCLIKNSFNPQGAGTLIGQ- 303

Query:   218 PVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
               D  ED+  I    KG  T+ NL +VNV G GM G+ G A+ +FGA+     ++++I+Q
Sbjct:   304 --DTGEDKLAI----KGITTLSNLTMVNVSGPGMKGMVGMASRVFGAMSAADVSIVLITQ 357

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0004412 "homoserine dehydrogenase activity" evidence=ISS

GO:0009088 "threonine biosynthetic process" evidence=ISS

TIGR_CMR|VC_2364 VC_2364 "aspartokinase I/homoserine dehydrogenase, threonine-sensitive" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 419 (152.6 bits), Expect = 2.3e-38, P = 2.3e-38
 Identities = 96/240 (40%), Positives = 138/240 (57%)

Query:    39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-QVDPDFSESEKRLEKWFS 97
             ++  GE  S Q++ AV+   G+    +D  + L+         VD + S    R +    
Sbjct:   128 IISKGERVSIQLMKAVMEAKGLPANLVDPVKYLLAKGDHLEAMVDVEISTQRFR-QAPLP 186

Query:    98 QSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPR 157
             Q   N  I  GF A         L R+GSD+SAA++ A LRA    IWTDVDGVY+ DPR
Sbjct:   187 QQHVN--IMPGFTAGNAQGELVCLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYNCDPR 244

Query:   158 KVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRP 217
              V +A +L++LSYQEA E+SYFGA+VLHP+TI P+ ++ IP +I+N FN    G +I + 
Sbjct:   245 LVDDARLLKSLSYQEAMELSYFGASVLHPKTIAPIAQFQIPCLIKNSFNPQGAGTLIGQ- 303

Query:   218 PVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
               D  ED+  I    KG  T+ NL +VNV G GM G+ G A+ +FGA+     ++++I+Q
Sbjct:   304 --DTGEDKLAI----KGITTLSNLTMVNVSGPGMKGMVGMASRVFGAMSAADVSIVLITQ 357

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0004412 "homoserine dehydrogenase activity" evidence=ISS

GO:0009088 "threonine biosynthetic process" evidence=ISS

TIGR_CMR|CPS_4291 CPS_4291 "aspartokinase/homoserine dehydrogenase, threonine-sensitive" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 412 (150.1 bits), Expect = 1.3e-37, P = 1.3e-37
 Identities = 96/244 (39%), Positives = 142/244 (58%)

Query:    39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ 98
             ++  GE  S  +L AV++   +    +   + L  N +S N V  D   S+++ E  +++
Sbjct:   122 IISTGERLSVAILDAVLQAYSVQVSLLAPEKFLYTNKSSLNAV-ADLVLSKEKFEHEYTE 180

Query:    99 SPSNTIIATGFIASTPDN---IP--TTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYS 153
               +   +  GFI    DN    P  TTL R+GSD+SAA++     A    IWTDVDGVY+
Sbjct:   181 L-NQVSLMPGFIGVNADNNDGTPEVTTLGRNGSDYSAAVLAVCAVAECCEIWTDVDGVYN 239

Query:   154 ADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIM 213
             ADPR + EA +L  LSYQEA E+SYFGA+VLHP+TI P+ +Y IP +I+N  N S PG +
Sbjct:   240 ADPRYIKEAKLLDYLSYQEAMELSYFGASVLHPKTIGPIAQYHIPCLIKNTSNPSAPGTL 299

Query:   214 ICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVI 273
             I       NE++Q     VK  + +D+L +VNV G GM G+ G A+ +F  +     +++
Sbjct:   300 I------SNENDQ--QKRVKAISNLDDLTMVNVSGPGMKGMVGMASRVFATMSRENISLV 351

Query:   274 MISQ 277
             +ISQ
Sbjct:   352 LISQ 355

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0004412 "homoserine dehydrogenase activity" evidence=ISS

GO:0009088 "threonine biosynthetic process" evidence=ISS

TIGR_CMR|SO_3415 SO_3415 "aspartokinase I/homoserine dehydrogenase, threonine-sensitive" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 382 (139.5 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 90/239 (37%), Positives = 129/239 (53%)

Query:    39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ 98
             +V  GE  SA ++  V+   GI    +D R++ +        V  D + S+ R +     
Sbjct:   123 IVVAGERLSAALMEQVMLAKGITSAQLDPRKLFLGRGRPLESV-VDIAVSKPRFKNLLLD 181

Query:    99 SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRK 158
                   +  GF A+  D    TL R+GSD+SAA++ A L A    IWTDVDGVY+ DPR 
Sbjct:   182 E-KRVWVMPGFTAADEDGKVVTLGRNGSDYSAAVLAACLDASSCEIWTDVDGVYNTDPRV 240

Query:   159 VSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPP 218
             V++A +L  LSYQEA E+SYFGA VLHP+TI P+ ++ IP  I+N FN   PG +     
Sbjct:   241 VADAKLLSQLSYQEAMELSYFGAKVLHPKTIAPIAQFHIPCYIKNSFNPDAPGTL----- 295

Query:   219 VDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
             V    D   +   VK  + +DN  + +V G GM G+ G A+    A+   G +V +I+Q
Sbjct:   296 VSNLADASGLQ--VKAISNLDNQTMFDVSGPGMKGMVGMASRTLAAISRSGVSVSLITQ 352

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0004412 "homoserine dehydrogenase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

GO:0009088 "threonine biosynthetic process" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

UNIPROTKB|P08660 lysC "LysC" [Escherichia coli K-12 (taxid:83333)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 79/248 (31%), Positives = 129/248 (52%)

Query:    34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE-SEKRL 92
             + TD +V HGEL S  +   ++R+  +  +W D R+V+  N     + +PD +  +E   
Sbjct:   109 ALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFG-RAEPDIAALAELAA 167

Query:    93 EKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY 152
              +   +     +I  GFI S      TTL R GSD++AA++   L A +V IWTDV G+Y
Sbjct:   168 LQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIY 227

Query:   153 SADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGI 212
             + DPR VS A  +  +++ EA EM+ FGA VLHP T++P +R DIP+ + +  +    G 
Sbjct:   228 TTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGT 287

Query:   213 MICRPPVDENEDEQIIDSPV-KGFATIDNLALVNVEGTGMAGVPGTANAIFG--AVKDVG 269
             ++C      N+ E   + P+ +  A   N  L+ +    M    G    +FG  A  ++ 
Sbjct:   288 LVC------NKTE---NPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNIS 338

Query:   270 ANVIMISQ 277
              ++I  S+
Sbjct:   339 VDLITTSE 346

GO:0016597 "amino acid binding" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004072 "aspartate kinase activity" evidence=IEA;IDA

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=IEA;IDA

GO:0009090 "homoserine biosynthetic process" evidence=IDA

UNIPROTKB|P00562 metL "MetL" [Escherichia coli K-12 (taxid:83333)]

 Score = 333 (122.3 bits), Expect = 4.1e-29, P = 4.1e-29
 Identities = 74/188 (39%), Positives = 107/188 (56%)

Query:    15 FIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVN 74
             F+       + +DSG     + + VVGHGE+WSA++++AV+ + G+   W+D RE L   
Sbjct:   102 FVSDLERLAALLDSGINDAVYAE-VVGHGEVWSARLMSAVLNQQGLPAAWLDAREFLRAE 160

Query:    75 PTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMG 134
               +  QVD   S     L++   Q P   ++ TGFI+         L R+GSD+SA  +G
Sbjct:   161 RAAQPQVDEGLSYP--LLQQLLVQHPGKRLVVTGFISRNNAGETVLLGRNGSDYSATQIG 218

Query:   135 ALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMR 194
             AL    +VTIW+DV GVYSADPRKV +A +L  L   EA E++   A VLH RT+ PV  
Sbjct:   219 ALAGVSRVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSG 278

Query:   195 YDIPIVIR 202
              +I + +R
Sbjct:   279 SEIDLQLR 286

GO:0050661 "NADP binding" evidence=IEA

GO:0009088 "threonine biosynthetic process" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=IEA

GO:0004072 "aspartate kinase activity" evidence=IEA;IDA

GO:0004412 "homoserine dehydrogenase activity" evidence=IEA;IDA

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=IEA;IDA

GO:0009090 "homoserine biosynthetic process" evidence=IDA

UNIPROTKB|Q9KUW8 VC_0391 "Aspartokinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 299 (110.3 bits), Expect = 3.3e-26, P = 3.3e-26
 Identities = 64/175 (36%), Positives = 99/175 (56%)

Query:    28 SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
             S  +++  TD +V  GEL S  +L  ++R+ G+D    D REVL  +     + +P   E
Sbjct:   132 SFQSSKKLTDHLVACGELISTYILTQLMRERGVDAVRFDIREVLRTDD-HYGRAEPQLKE 190

Query:    88 -SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
              ++   EK         ++  GFI S      TTL R GSD+SAA++   ++A  + IWT
Sbjct:   191 IAQLAKEKLVPLCEQYVVVTQGFIGSDAQGNTTTLGRGGSDYSAALIAEAVQASGLEIWT 250

Query:   147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVI 201
             DV G+YS DPR   +A  +  +S+ EA EM+ FGA +LHP T++P +R+ IP+ +
Sbjct:   251 DVPGIYSTDPRIAPKAAPIPEISFSEASEMANFGAKILHPSTLLPAVRHGIPVFV 305

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O81852	AKH2_ARATH	1, ., 1, ., 1, ., 3	0.7896	0.9422	0.2849	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.2	LOW CONFIDENCE prediction!
4th Layer	2.7.2.4	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_XIX000654	hypothetical protein (829 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_scaffold_66000196	homoserine kinase (EC-2.7.1.39) (366 aa)	•		•	•		•	•		0.987
	eugene3.37950001	aspartate semialdehyde dehydrogenase (EC-1.2.1.11) (344 aa)						•	•		0.923
	grail3.0035005702	dihydrodipicolinate synthase (EC-4.2.1.52) (363 aa)						•	•		0.922
	eugene3.00081272	aspartate semialdehyde dehydrogenase (EC-1.2.1.11) (375 aa)						•	•		0.921
	eugene3.00100987	aspartate semialdehyde dehydrogenase (EC-1.2.1.11) (375 aa)						•	•		0.921
	estExt_fgenesh4_pg.C_LG_II1351	dihydrodipicolinate synthase (EC-4.2.1.52) (366 aa)						•	•		0.921
	estExt_fgenesh4_pg.C_LG_XVI0748	adenylosuccinate synthase (EC-6.3.4.4); Plays an important role in the de novo pathway of purin [...] (491 aa)				•		•			0.816
	estExt_fgenesh4_pm.C_LG_XVIII0241	SubName- Full=Putative uncharacterized protein; (407 aa)						•			0.810
	estExt_fgenesh4_pg.C_LG_VI1672	aspartate transaminase (EC-2.6.1.1) (449 aa)						•			0.807
	gw1.XIV.3012.1	aspartate transaminase (EC-2.6.1.1) (403 aa)						•			0.806

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	277
cd04257	294	cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kina	3e-98
cd04243	293	cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino	2e-92
PRK09436	819	PRK09436, thrA, bifunctional aspartokinase I/homos	1e-91
COG0527	447	COG0527, LysC, Aspartokinases [Amino acid transpor	2e-84
cd04234	227	cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfa	2e-76
PRK06291	465	PRK06291, PRK06291, aspartate kinase; Provisional	9e-71
TIGR00657	441	TIGR00657, asp_kinases, aspartate kinase	6e-69
TIGR00656	401	TIGR00656, asp_kin_monofn, aspartate kinase, monof	7e-60
PRK09084	448	PRK09084, PRK09084, aspartate kinase III; Validate	2e-51
cd04258	292	cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Ami	5e-51
cd04244	298	cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino	9e-51
PRK09466	810	PRK09466, metL, bifunctional aspartate kinase II/h	3e-46
PRK08961	861	PRK08961, PRK08961, bifunctional aspartate kinase/	2e-45
cd04259	295	cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Ki	3e-40
PRK06635	404	PRK06635, PRK06635, aspartate kinase; Reviewed	4e-39
cd04245	288	cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Ami	8e-37
cd04246	239	cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino	2e-34
PRK09034	454	PRK09034, PRK09034, aspartate kinase; Reviewed	3e-34
cd02115	248	cd02115, AAK, Amino Acid Kinases (AAK) superfamily	1e-32
PLN02551	521	PLN02551, PLN02551, aspartokinase	2e-31
cd04260	244	cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino A	5e-31
cd04261	239	cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino	1e-30
PRK08210	403	PRK08210, PRK08210, aspartate kinase I; Reviewed	3e-30
PRK05925	440	PRK05925, PRK05925, aspartate kinase; Provisional	3e-28
pfam00696	230	pfam00696, AA_kinase, Amino acid kinase family	3e-28
PRK08373	341	PRK08373, PRK08373, aspartate kinase; Validated	7e-28
cd04247	306	cd04247, AAK_AK-Hom3, AAK_AK-Hom3: Amino Acid Kina	3e-27
PRK07431	587	PRK07431, PRK07431, aspartate kinase; Provisional	3e-27
TIGR02078	327	TIGR02078, AspKin_pair, Pyrococcus aspartate kinas	1e-20
PRK08841	392	PRK08841, PRK08841, aspartate kinase; Validated	2e-18
cd04921	80	cd04921, ACT_AKi-HSDH-ThrA-like_1, ACT domains of	1e-13
cd04239	229	cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase	4e-10
PRK06291	465	PRK06291, PRK06291, aspartate kinase; Provisional	9e-09
cd04892	65	cd04892, ACT_AK-like_2, ACT domains C-terminal to	1e-08
cd04924	66	cd04924, ACT_AK-Arch_2, ACT domains of a monofunct	3e-08
PRK00358	231	PRK00358, pyrH, uridylate kinase; Provisional	4e-08
COG0528	238	COG0528, PyrH, Uridylate kinase [Nucleotide transp	4e-08
TIGR02075	232	TIGR02075, pyrH_bact, uridylate kinase	1e-07
cd04254	231	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, t	4e-07
cd04868	60	cd04868, ACT_AK-like, ACT domains C-terminal to th	1e-06
cd04248	304	cd04248, AAK_AK-Ectoine, AAK_AK-Ectoine: Amino Aci	6e-06
PRK14558	231	PRK14558, pyrH, uridylate kinase; Provisional	1e-05
TIGR02076	221	TIGR02076, pyrH_arch, uridylate kinase, putative	2e-05
cd04253	221	cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP k	2e-05
PRK09034	454	PRK09034, PRK09034, aspartate kinase; Reviewed	2e-04
cd04922	66	cd04922, ACT_AKi-HSDH-ThrA_2, ACT domains of the b	5e-04
cd04242	251	cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-k	6e-04
PRK05429	372	PRK05429, PRK05429, gamma-glutamyl kinase; Provisi	9e-04
COG0263	369	COG0263, ProB, Glutamate 5-kinase [Amino acid tran	0.001
TIGR01027	363	TIGR01027, proB, glutamate 5-kinase	0.001
PRK09084	448	PRK09084, PRK09084, aspartate kinase III; Validate	0.002
cd04255	262	cd04255, AAK_UMPK-MosAB, AAK_UMPK-MosAB: This CD i	0.002

>gnl|CDD|239790 cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH)

 Score =  289 bits (742), Expect = 3e-98
 Identities = 97/187 (51%), Positives = 126/187 (67%), Gaps = 2/187 (1%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G   +S    V+  GE  SA++L+A++ + G+D  W+D RE LIV          D   S
Sbjct: 110 GELPDSIRAKVLSFGERLSARLLSALLNQQGLDAAWIDARE-LIVTDGGYLNAVVDIELS 168

Query: 89  EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
           ++R++ WFS +    I+ TGFIAS P    TTL R+GSD+SAAI+ ALL A QV IWTDV
Sbjct: 169 KERIKAWFSSNGK-VIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLDADQVEIWTDV 227

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
           DGVYSADPRKV +A +L +LSYQEA E+SYFGA VLHP+TI PV + +IPI+I+N FN  
Sbjct: 228 DGVYSADPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNPE 287

Query: 209 VPGIMIC 215
            PG +I 
Sbjct: 288 APGTLIS 294

These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Length = 294

>gnl|CDD|239776 cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH)

 Score =  274 bits (704), Expect = 2e-92
 Identities = 83/187 (44%), Positives = 120/187 (64%), Gaps = 2/187 (1%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G  ++     V+  GEL S+++++A +++ G+   W+D RE+ ++          D   S
Sbjct: 109 GELSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDAREL-LLTDDGFLNAVVDLKLS 167

Query: 89  EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
           ++RL +  ++     ++  GFIAS  D   TTL R GSD+SAA++ ALL A +V IWTDV
Sbjct: 168 KERLAQLLAEH-GKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDV 226

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
           DGVY+ADPRKV +A +L+ LSY EA E++YFGA VLHPRTI P +R +IPI I+N FN  
Sbjct: 227 DGVYTADPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNPE 286

Query: 209 VPGIMIC 215
            PG +I 
Sbjct: 287 APGTLIS 293

These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Also included in this CD is the catalytic domain of the aspartokinase (AK) of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Also included in this CD is the catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. Length = 293

>gnl|CDD|181856 PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

 Score =  287 bits (737), Expect = 1e-91
 Identities = 99/241 (41%), Positives = 145/241 (60%), Gaps = 9/241 (3%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWF 96
             ++  GE  S  ++AAV+   G D   +D RE+L+ +     +   D +ES +R+   F
Sbjct: 120 AAIISRGERLSIAIMAAVLEARGHDVTVIDPRELLLAD-GHYLESTVDIAESTRRIAASF 178

Query: 97  SQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADP 156
             +  + I+  GF A        TL R+GSD+SAAI+ A L A    IWTDVDGVY+ADP
Sbjct: 179 IPAD-HVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADP 237

Query: 157 RKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICR 216
           R V +A +L++LSYQEA E+SYFGA VLHPRTI P+ ++ IP +I+N FN   PG +I  
Sbjct: 238 RVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQAPGTLIGA 297

Query: 217 PPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS 276
              ++         PVKG + ++N+A+ NV G GM G+ G A+ +F A+   G +V++I+
Sbjct: 298 ESDED-------SLPVKGISNLNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLIT 350

Query: 277 Q 277
           Q
Sbjct: 351 Q 351

Length = 819

>gnl|CDD|223601 COG0527, LysC, Aspartokinases [Amino acid transport and metabolism]

 Score =  259 bits (664), Expect = 2e-84
 Identities = 97/246 (39%), Positives = 135/246 (54%), Gaps = 9/246 (3%)

Query: 32  TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKR 91
           +    D ++  GE  SA +LAA +   G+D + +D R+  I   ++         +SE+R
Sbjct: 107 SPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERR 166

Query: 92  LEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGV 151
           L +          +  GF     D   TTL R GSD+SAA + A L A +V IWTDVDGV
Sbjct: 167 LLR--LLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGV 224

Query: 152 YSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG 211
           Y+ADPR V +A +L  +SY+EA E++Y GA VLHPR + P MR  IP+ I+N FN   PG
Sbjct: 225 YTADPRIVPDARLLPEISYEEALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNPDAPG 284

Query: 212 IMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGAN 271
            +I      +          VKG A  DN+AL+ V G GM G+ G A  +FG + + G N
Sbjct: 285 TLITAETESDEP-------VVKGIALDDNVALITVSGPGMNGMVGFAARVFGILAEAGIN 337

Query: 272 VIMISQ 277
           V +I+Q
Sbjct: 338 VDLITQ 343

Length = 447

>gnl|CDD|239767 cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;)

 Score =  231 bits (592), Expect = 2e-76
 Identities = 74/177 (41%), Positives = 106/177 (59%), Gaps = 2/177 (1%)

Query: 39  VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ 98
           ++  GE  SA++LAA +R  GI  + +D R+  I     ++        S +RL++  ++
Sbjct: 53  LLSFGERLSARLLAAALRDRGIKARSLDARQAGITT-DDNHGAARIIEISYERLKELLAE 111

Query: 99  SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRK 158
                 + TGFI    D   TTL R GSD+SAA + A L A +V IWTDVDG+Y+ADPR 
Sbjct: 112 I-GKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRI 170

Query: 159 VSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215
           V EA ++  +SY EA E++YFGA VLHPR + P  + +IPI ++N FN   PG +I 
Sbjct: 171 VPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPEAPGTLIT 227

AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback-inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, one is a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this CD is the catalytic domain of the Methylomicrobium alcaliphilum ectoine AK, the first enzyme of the ectoine biosynthetic pathway, found in this bacterium, and several other halophilic/halotolerant bacteria. Length = 227

>gnl|CDD|235773 PRK06291, PRK06291, aspartate kinase; Provisional

 Score =  224 bits (574), Expect = 9e-71
 Identities = 107/247 (43%), Positives = 143/247 (57%), Gaps = 18/247 (7%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN----QVDPDFSESEKRL 92
           D+++  GE  SA +L+  +R  GI    +   E  I+  T SN    +  P   ++ +R+
Sbjct: 123 DYILSFGERLSAPILSGALRDLGIKSVALTGGEAGII--TDSNFGNARPLP---KTYERV 177

Query: 93  EKWFSQSPSNTII--ATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDG 150
           ++         +I   TGFI  T + I TTL R GSD+SAAI+GA L A ++ IWTDVDG
Sbjct: 178 KERLEPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDG 237

Query: 151 VYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVP 210
           V + DPR V EA ++  +SY EA E+SYFGA VLHPRTI P M   IP+ ++N FN   P
Sbjct: 238 VMTTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNPEFP 297

Query: 211 GIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGA 270
           G +I         D +     VK    I N+AL+N+ G GM GVPGTA  IF A+ + G 
Sbjct: 298 GTLITS-------DSESSKRVVKAVTLIKNVALINISGAGMVGVPGTAARIFSALAEEGV 350

Query: 271 NVIMISQ 277
           NVIMISQ
Sbjct: 351 NVIMISQ 357

Length = 465

>gnl|CDD|233076 TIGR00657, asp_kinases, aspartate kinase

 Score =  219 bits (560), Expect = 6e-69
 Identities = 86/243 (35%), Positives = 128/243 (52%), Gaps = 11/243 (4%)

Query: 36  TDFVVGHGELWSAQMLAAVVRKNGIDCKWM-DTREVLIVNPTSSNQVDPDFSESEKRLEK 94
            D ++  GE  SA +L+A + + G+    +      ++ +               +RLE 
Sbjct: 105 MDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARV-IIEILTERLEP 163

Query: 95  WFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSA 154
              +      +  GF  +T     TTL R GSD++AA++ A L+A +  I+TDVDG+Y+ 
Sbjct: 164 LLEEGII--PVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTT 221

Query: 155 DPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMI 214
           DPR V +A  +  +SY+E  E++ FGA VLHPRT+ P MR  IPIV+++ FN   PG +I
Sbjct: 222 DPRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKIPIVVKSTFNPEAPGTLI 281

Query: 215 CRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIM 274
                 E E     +  VKG +   N A V V G GM G PG    +FGA+ + G NV +
Sbjct: 282 V-ASTKEME-----EPIVKGLSLDRNQARVTVSGLGMKG-PGFLARVFGALAEAGINVDL 334

Query: 275 ISQ 277
           I+Q
Sbjct: 335 ITQ 337

Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer.The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis [Amino acid biosynthesis, Aspartate family]. Length = 441

>gnl|CDD|233075 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class

 Score =  194 bits (496), Expect = 7e-60
 Identities = 93/255 (36%), Positives = 131/255 (51%), Gaps = 15/255 (5%)

Query: 25  NVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVD-- 82
                  T    D +V HGE  S+ + +  +R  G+   W+D  E  I+  T  N  +  
Sbjct: 55  KAIRDAITPRERDELVSHGERLSSALFSGALRDLGVKAIWLDGGEAGII--TDDNFGNAK 112

Query: 83  PDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQV 142
            D   +E+RL     +     ++  GF  +T     TTL R GSD++AA++ A L+A +V
Sbjct: 113 IDIIATEERLLPLLEEG--IIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRV 170

Query: 143 TIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIR 202
            I+TDV GVY+ DPR V  A  +  +SY+EA E++ FGA VLHPRT+ P MR  +PI +R
Sbjct: 171 DIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVR 230

Query: 203 NIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIF 262
           + F+    G +I      EN         VKG A   N+  V V G GM G  G    IF
Sbjct: 231 SSFDPE-EGTLITNS--MENPP------LVKGIALRKNVTRVTVHGLGMLGKRGFLARIF 281

Query: 263 GAVKDVGANVIMISQ 277
           GA+ +   NV +ISQ
Sbjct: 282 GALAERNINVDLISQ 296

This model describes a subclass of aspartate kinases. These are mostly Lys-sensitive and not fused to homoserine dehydrogenase, unlike some Thr-sensitive and Met-sensitive forms. Homoserine dehydrogenase is part of Thr and Met but not Lys biosynthetic pathways. Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases [Amino acid biosynthesis, Aspartate family]. Length = 401

>gnl|CDD|236376 PRK09084, PRK09084, aspartate kinase III; Validated

 Score =  173 bits (442), Expect = 2e-51
 Identities = 76/248 (30%), Positives = 124/248 (50%), Gaps = 14/248 (5%)

Query: 32  TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN--QVDPDFSESE 89
           + + TD +V HGEL S  +   ++R+ G+  +W D R+V+    T     + +PD +   
Sbjct: 105 SPALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKVMR---TDDRFGRAEPDVAALA 161

Query: 90  KRLEKWFSQSPSNTIIAT-GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
           +  ++      +  ++ T GFI S      TTL R GSD+SAA++   L A +V IWTDV
Sbjct: 162 ELAQEQLLPLLAEGVVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDV 221

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
            G+Y+ DPR V  A  +  +S++EA EM+ FGA VLHP T++P +R +IP+ + +  +  
Sbjct: 222 PGIYTTDPRIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDPE 281

Query: 209 VPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDV 268
             G  IC    +            +  A   N  L+ +    M    G    +FG +   
Sbjct: 282 AGGTWICNDTENP--------PLFRAIALRRNQTLLTLHSLNMLHARGFLAEVFGILARH 333

Query: 269 GANVIMIS 276
             +V +I+
Sbjct: 334 KISVDLIT 341

Length = 448

>gnl|CDD|239791 cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII

 Score =  168 bits (428), Expect = 5e-51
 Identities = 64/188 (34%), Positives = 104/188 (55%), Gaps = 2/188 (1%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G  + +  D ++  GE  S+ + +  +R+ G+  +W D R VL  + +   +  PD +  
Sbjct: 106 GELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTVLRTD-SRFGRAAPDLNAL 164

Query: 89  EKRLEKWFSQSPSNTIIAT-GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
            +   K      + T++ T GFI ST     TTL R GSD+SAA++   L A ++ IWTD
Sbjct: 165 AELAAKLLKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTD 224

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           V G+Y+ DPR    A  ++ +S+ EA EM+ FGA VLHP T++P +R +IP+ + +  + 
Sbjct: 225 VAGIYTTDPRICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDP 284

Query: 208 SVPGIMIC 215
              G +I 
Sbjct: 285 EAGGTLIT 292

AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Length = 292

>gnl|CDD|239777 cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants

 Score =  168 bits (427), Expect = 9e-51
 Identities = 77/181 (42%), Positives = 104/181 (57%), Gaps = 5/181 (2%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDP---DFSESEKRLE 93
           D++V  GE  SA + +A +R  GI  + +D  E  I+   +     P    +    KRL 
Sbjct: 119 DYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATYERVRKRLL 178

Query: 94  KWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYS 153
               +     ++ TGFI +T D   TTL R GSD+SA I+GA L A ++ IW DVDGV +
Sbjct: 179 P-MLEDGKIPVV-TGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMT 236

Query: 154 ADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIM 213
           ADPR V EA  +  LSY EA E++YFGA VLHPRT+ P M   IP+ ++N FN   PG +
Sbjct: 237 ADPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNPEAPGTL 296

Query: 214 I 214
           I
Sbjct: 297 I 297

The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Length = 298

>gnl|CDD|236530 PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

 Score =  165 bits (419), Expect = 3e-46
 Identities = 70/164 (42%), Positives = 99/164 (60%), Gaps = 2/164 (1%)

Query: 39  VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ 98
           VVGHGE+WSA+++AA++ + G+   W+D R  L     +  QVD     S   L++  +Q
Sbjct: 125 VVGHGEVWSARLMAALLNQQGLPAAWLDARSFLRAERAAQPQVD--EGLSYPLLQQLLAQ 182

Query: 99  SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRK 158
            P   ++ TGFI+         L R+GSD+SA ++GAL    +VTIW+DV GVYSADPRK
Sbjct: 183 HPGKRLVVTGFISRNEAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRK 242

Query: 159 VSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIR 202
           V +A +L  L   EA E++   A VLH RT+ PV   DI + +R
Sbjct: 243 VKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDIDLQLR 286

Length = 810

>gnl|CDD|236358 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

 Score =  162 bits (413), Expect = 2e-45
 Identities = 88/251 (35%), Positives = 122/251 (48%), Gaps = 28/251 (11%)

Query: 39  VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLE---KW 95
           V+G GEL S  + AA +  +G+D  W+D RE L   P       P+ SE  + L    +W
Sbjct: 122 VLGQGELLSTTLGAAYLEASGLDMGWLDAREWLTALP------QPNQSEWSQYLSVSCQW 175

Query: 96  ---------FSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
                    F+  P+  +I  GFIA   D     L R GSD SAA   A L A +V IWT
Sbjct: 176 QSDPALRERFAAQPAQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWT 235

Query: 147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFN 206
           DV G++SA+P++V +A +L  L Y EA E++  GA VLHPR+I P     IP+ I +   
Sbjct: 236 DVPGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDTER 295

Query: 207 LSVPGIMICRPPVDENEDEQIIDSP-VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAV 265
             + G  I         D      P VK  +  + + LV++E  GM    G    +F   
Sbjct: 296 PDLSGTSI---------DGDAEPVPGVKAISRKNGIVLVSMETIGMWQQVGFLADVFTLF 346

Query: 266 KDVGANVIMIS 276
           K  G +V +IS
Sbjct: 347 KKHGLSVDLIS 357

Length = 861

>gnl|CDD|239792 cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria

 Score =  141 bits (356), Expect = 3e-40
 Identities = 67/182 (36%), Positives = 98/182 (53%), Gaps = 7/182 (3%)

Query: 39  VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ------VDPDFSESEKRL 92
           V+  GEL S ++ AA +   G+  KW+D RE+L   PT   +         +   ++  L
Sbjct: 114 VLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPTLGGETMNYLSARCESEYADALL 173

Query: 93  EKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY 152
           +K  +   +  II  GFIA         L R GSD SAA   A L+A +  IWTDV G++
Sbjct: 174 QKRLA-DGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLF 232

Query: 153 SADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGI 212
           +A+P +V  A +L+ L Y EA E++  GA VLHPR I P  R +IP+V+R+     + G 
Sbjct: 233 TANPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERPELSGT 292

Query: 213 MI 214
           +I
Sbjct: 293 LI 294

Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. Length = 295

>gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed

 Score =  140 bits (355), Expect = 4e-39
 Identities = 82/250 (32%), Positives = 126/250 (50%), Gaps = 29/250 (11%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-------QVDPDFSESE 89
           D ++  GE  S  +LA  ++  G+  +     +  I+  T S         +DP      
Sbjct: 67  DMLLSTGEQVSVALLAMALQSLGVKARSFTGWQAGII--TDSAHGKARITDIDPS----- 119

Query: 90  KRLEKWFSQSPSNTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
            R+ +   +     + +  GF     D   TTL R GSD +A  + A L+A +  I+TDV
Sbjct: 120 -RIREALDE---GDVVVVAGFQGVDEDGEITTLGRGGSDTTAVALAAALKADECEIYTDV 175

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
           DGVY+ DPR V +A  L  +SY+E  E++  GA VLHPR++    +Y++P+ +R+ F+  
Sbjct: 176 DGVYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFS-D 234

Query: 209 VPGIMICRPPVDENEDEQIIDSP-VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
            PG +I        E+E+I++ P V G A   + A V V   G+   PG A  IFGA+ +
Sbjct: 235 NPGTLIT------GEEEEIMEQPVVTGIAFDKDEAKVTV--VGVPDKPGIAAQIFGALAE 286

Query: 268 VGANVIMISQ 277
              NV MI Q
Sbjct: 287 ANINVDMIVQ 296

Length = 404

>gnl|CDD|239778 cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species

 Score =  131 bits (332), Expect = 8e-37
 Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 7/180 (3%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREV-LIVNPTSSN-QVDPDFSESEKRLEK 94
           D +   GE  +AQ++AA +   GID +++  ++  L+V     N Q+ P   ES ++++K
Sbjct: 113 DALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILP---ESYQKIKK 169

Query: 95  WFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSA 154
                    ++  GF   + +    T  R GSD + AI+    +A     +TDVDG+Y+A
Sbjct: 170 LRD--SDEKLVIPGFYGYSKNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAA 227

Query: 155 DPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMI 214
           +PR V+    +  ++Y+E  E+SY G +V H   +IP +   IPI I+N  +   PG +I
Sbjct: 228 NPRIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAGIPINIKNTNHPEAPGTLI 287

Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine. Length = 288

>gnl|CDD|239779 cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes

 Score =  124 bits (314), Expect = 2e-34
 Identities = 63/187 (33%), Positives = 98/187 (52%), Gaps = 18/187 (9%)

Query: 36  TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-------QVDPDFSES 88
            D ++  GE  SA +LA  + + GI    +   +  I+  T  +        +DP     
Sbjct: 64  LDMLLSTGEQISAALLAMALNRLGIKAISLTGWQAGIL--TDDHHGNARIIDIDP----- 116

Query: 89  EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
            KR+ +   +   + ++  GF     D   TTL R GSD +A  + A L+A +  I+TDV
Sbjct: 117 -KRILEALEEG--DVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDV 173

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
           DGVY+ADPR V +A  L  +SY E  EM+  GA VLHPR++    +Y++P+ +R+ F+  
Sbjct: 174 DGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFS-E 232

Query: 209 VPGIMIC 215
            PG +I 
Sbjct: 233 NPGTLIT 239

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. In Corynebacterium glutamicum and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinase isoenzyme types found in Pseudomonas, C. glutamicum, and Amycolatopsis lactamdurans. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. The B. subtilis 168 AKII aspartokinase is also described as tetrameric consisting of two alpha and two beta subunits. Some archeal aspartokinases in this group lack recognizable ACT domains. Length = 239

>gnl|CDD|236364 PRK09034, PRK09034, aspartate kinase; Reviewed

 Score =  128 bits (324), Expect = 3e-34
 Identities = 67/214 (31%), Positives = 105/214 (49%), Gaps = 19/214 (8%)

Query: 33  ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREV-LIVNPTSSN-QVDPDFSESEK 90
           +   D     GE  +A+++AA +   GI  +++D +E  +IV     N QV P   ES  
Sbjct: 109 DRLLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLP---ESYD 165

Query: 91  RLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDG 150
            L+K   +     ++  GF   T D    T  R GSD + AI+   ++A     +TDVDG
Sbjct: 166 NLKKL--RDRDEKLVIPGFFGVTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDG 223

Query: 151 VYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVP 210
           +Y+A+PR V     ++ ++Y+E  E+SY G +V H   +IP  R  IPI I+N  N   P
Sbjct: 224 IYAANPRIVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYRGGIPINIKNTNNPEDP 283

Query: 211 GIMICRPPVDENEDEQIIDSPV------KGFATI 238
           G +I        + +    +P+      KGF +I
Sbjct: 284 GTLI------VPDRDNKNKNPITGIAGDKGFTSI 311

Length = 454

>gnl|CDD|239033 cd02115, AAK, Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK)

 Score =  119 bits (301), Expect = 1e-32
 Identities = 63/180 (35%), Positives = 93/180 (51%), Gaps = 8/180 (4%)

Query: 32  TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT--SSNQVDPDFSESE 89
           T+  TD +   GE  S  ++AA + ++GI    +D  +    +P      ++      S 
Sbjct: 62  TDRETDALAAMGEGMSNLLIAAALEQHGIKAVPLDLTQAGFASPNQGHVGKITK---VST 118

Query: 90  KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVD 149
            RL+           I +GF  +       TL R GSD +AA++ A L+A ++ I TDVD
Sbjct: 119 DRLKSLLENG--ILPILSGFGGTDEKET-GTLGRGGSDSTAALLAAALKADRLVILTDVD 175

Query: 150 GVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSV 209
           GVY+ADPRKV +A +L  L+Y+EA E++Y GA VL P+   P  R  IP+ I N  N   
Sbjct: 176 GVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGA 235

The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition. Length = 248

>gnl|CDD|178166 PLN02551, PLN02551, aspartokinase

 Score =  121 bits (305), Expect = 2e-31
 Identities = 71/241 (29%), Positives = 127/241 (52%), Gaps = 12/241 (4%)

Query: 36  TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIV---NPTSSNQVDPDFSESEKRL 92
            D++V  GE  S ++ AA + K G+  +  D  ++  +   + T+++ ++  +    KRL
Sbjct: 165 RDYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRL 224

Query: 93  EKWFSQSPSNTIIATGFIA-STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGV 151
              +   P+  ++ TGF+         TTL R GSD +A  +G  L   ++ +W DVDGV
Sbjct: 225 HGDWIDDPAVPVV-TGFLGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGV 283

Query: 152 YSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG 211
            + DPR    AV +  L++ EA E++YFGA VLHP+++ P    DIP+ ++N +N + PG
Sbjct: 284 LTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPTAPG 343

Query: 212 IMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGAN 271
            +I +     +  + ++ S V       N+ ++++  T M G  G    +F   +D+G +
Sbjct: 344 TLITK---TRDMSKAVLTSIVLK----RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGIS 396

Query: 272 V 272
           V
Sbjct: 397 V 397

Length = 521

>gnl|CDD|239793 cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species

 Score =  115 bits (290), Expect = 5e-31
 Identities = 63/180 (35%), Positives = 99/180 (55%), Gaps = 6/180 (3%)

Query: 36  TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE-SEKRLEK 94
            D ++  GE+ SA +L + +R  G+    +   +  I+  T  N  +    + + K++  
Sbjct: 69  LDLLMSCGEIISAVVLTSTLRAQGLKAVALTGAQAGIL--TDDNYSNAKIIKVNPKKILS 126

Query: 95  WFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSA 154
              +   + ++  GF   T D   TTL R GSD +AA +GA L A  V I+TDVDG+ +A
Sbjct: 127 ALKEG--DVVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTA 184

Query: 155 DPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMI 214
           DPR V  A IL  +SY E ++M++ GA V+HPR +   M+ +IPI IR+  +   PG +I
Sbjct: 185 DPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRSTMS-ENPGTLI 243

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. Length = 244

>gnl|CDD|239794 cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences

 Score =  114 bits (287), Expect = 1e-30
 Identities = 63/187 (33%), Positives = 94/187 (50%), Gaps = 18/187 (9%)

Query: 36  TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-------QVDPDFSES 88
            D ++  GE  S  +LA  + + GI    +   +  I+  T  +        +DPD    
Sbjct: 64  LDVLLSTGEQVSIALLAMALNRLGIKAISLTGWQAGIL--TDGHHGKARIIDIDPD---- 117

Query: 89  EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
             R+ +   +   + +I  GF     D   TTL R GSD SA  + A L A +  I+TDV
Sbjct: 118 --RIRELLEEG--DVVIVAGFQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDV 173

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
           DGVY+ADPR V +A  L  +SY E  EM+  GA VLHPR++    +Y +P+ + + F+  
Sbjct: 174 DGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFS-E 232

Query: 209 VPGIMIC 215
            PG +I 
Sbjct: 233 EPGTLIT 239

In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and theronine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinases found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans aspartokinases are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides. Length = 239

>gnl|CDD|236188 PRK08210, PRK08210, aspartate kinase I; Reviewed

 Score =  116 bits (294), Expect = 3e-30
 Identities = 64/213 (30%), Positives = 114/213 (53%), Gaps = 7/213 (3%)

Query: 36  TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE-KRLEK 94
            D ++  GE+ S+ + + ++ +NGI    +   +  I+  T  N  +    E    R+ +
Sbjct: 71  QDLLMSCGEIISSVVFSNMLNENGIKAVALTGGQAGII--TDDNFTNAKIIEVNPDRILE 128

Query: 95  WFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSA 154
              +   + ++  GF   T +   TTL R GSD +AA +G  L+A  V I+TDVDG+ +A
Sbjct: 129 ALEEG--DVVVVAGFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTA 186

Query: 155 DPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMI 214
           DPR V +A +L  +SY E ++M+Y GA V+HPR +   M+ +IP+ IR+ ++   PG +I
Sbjct: 187 DPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYS-DSPGTLI 245

Query: 215 CRPPVDENEDEQIIDSPVKGFATIDNLALVNVE 247
                 +   + + +  + G A + N+  + V+
Sbjct: 246 TSLGDAKGGID-VEERLITGIAHVSNVTQIKVK 277

Length = 403

>gnl|CDD|235646 PRK05925, PRK05925, aspartate kinase; Provisional

 Score =  111 bits (280), Expect = 3e-28
 Identities = 55/175 (31%), Positives = 95/175 (54%), Gaps = 6/175 (3%)

Query: 43  GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQS-PS 101
           GE  SA ++ A      +  ++++ R+V I+      +  PD +  +     W   +   
Sbjct: 109 GEDISASLICAYCCTYVLPLEFLEARQV-ILTDDQYLRAVPDLALMQ---TAWHELALQE 164

Query: 102 NTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVS 160
           + I I  GFI +      T L R GSDFSA+++  L +A +V I+TDV+G+Y+ DP+ + 
Sbjct: 165 DAIYIMQGFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIK 224

Query: 161 EAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215
           +A ++  LS++E   ++ FGA VLHP  + P +R  IPI + + F+++  G  I 
Sbjct: 225 DAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFDVTKGGTWIY 279

Length = 440

>gnl|CDD|216067 pfam00696, AA_kinase, Amino acid kinase family

 Score =  107 bits (269), Expect = 3e-28
 Identities = 50/172 (29%), Positives = 72/172 (41%), Gaps = 26/172 (15%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWF 96
             VV  GE   A+ +A ++   G+    +D                       + +++  
Sbjct: 80  RIVVSLGERLGARAVALLLSDGGLPAVRLD-------------------LVDTEAIKELL 120

Query: 97  SQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADP 156
                   + TGF         TTL R  SD  AA++   L A ++ I TDVDGVY+ADP
Sbjct: 121 EAG--VVPVITGFGGENDTGETTTLGRGSSDTLAALLAEALGADKLIILTDVDGVYTADP 178

Query: 157 RKVSEAVILRTLSYQEAWEMS-----YFGANVLHPRTIIPVMRYDIPIVIRN 203
           RK  +A ++  LSY EA E+        G  V HP  +    R  IP+ I N
Sbjct: 179 RKNPDAKLIPELSYDEAEELLAAGDVTGGMKVKHPAALKAARRGGIPVHIIN 230

This family includes kinases that phosphorylate a variety of amino acid substrates, as well as uridylate kinase and carbamate kinase. This family includes: Aspartokinase EC:2.7.2.4, Acetylglutamate kinase EC:2.7.2.8, Glutamate 5-kinase EC:2.7.2.11, Uridylate kinase EC:2.7.4.-, Carbamate kinase EC:2.7.2.2. Length = 230

>gnl|CDD|236250 PRK08373, PRK08373, aspartate kinase; Validated

 Score =  109 bits (274), Expect = 7e-28
 Identities = 58/180 (32%), Positives = 91/180 (50%), Gaps = 4/180 (2%)

Query: 22  FLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQV 81
            L N      +E+  D+++  GE  SA + A  +   GI  K +D  E+L    +  N  
Sbjct: 88  KLFNSRPDLPSEALRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEILEAKGSFGN-A 146

Query: 82  DPDFSESEKRLEKWFSQSPSNTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAH 140
             D  +S++ ++  +       + +  GFI +  +    TL R GSD+SA  +G LL A 
Sbjct: 147 FIDIKKSKRNVKILYELLERGRVPVVPGFIGNL-NGFRATLGRGGSDYSAVALGVLLNAK 205

Query: 141 QVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIV 200
            V I +DV+G+Y+ADP+ V  A ++  LSY EA   +  G   LH + I PV +  IPI+
Sbjct: 206 AVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAAKLGMKALHWKAIEPV-KGKIPII 264

Length = 341

>gnl|CDD|239780 cd04247, AAK_AK-Hom3, AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains

 Score =  106 bits (267), Expect = 3e-27
 Identities = 58/179 (32%), Positives = 102/179 (56%), Gaps = 2/179 (1%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDF-SESEKRLEKW 95
           D V+  GE  S + +AAV+R  G+D +++D   + +    S   +D  F  E  + L + 
Sbjct: 126 DLVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHI-VDLDFSIEALDQTFYDELAQVLGEK 184

Query: 96  FSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSAD 155
            +   +   + TGF  + P  + + + R  +D  AA+    L A ++ IW +VDG+++AD
Sbjct: 185 ITACENRVPVVTGFFGNVPGGLLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTAD 244

Query: 156 PRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMI 214
           PRKV  A +L +++ +EA E++Y+G+ V+HP T+  V++  IPI I+N+ N    G +I
Sbjct: 245 PRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKARIPIRIKNVENPRGEGTVI 303

Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Length = 306

>gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional

 Score =  110 bits (276), Expect = 3e-27
 Identities = 59/179 (32%), Positives = 92/179 (51%), Gaps = 6/179 (3%)

Query: 102 NTIIATGF--IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKV 159
             ++  GF  I+ + +   TTL R GSD SA  + A L A    I+TDV GV + DPR V
Sbjct: 129 KVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLV 188

Query: 160 SEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPV 219
            EA ++  +S  E  E++  GA+VLHPR +     Y +P+V+R+ ++ + PG ++  PP 
Sbjct: 189 PEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSWSDA-PGTLVTSPPP 247

Query: 220 DENEDEQI-IDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
                  + +  PV G    ++ A V +    +   PG A  +F  +   G NV +I Q
Sbjct: 248 RPRSLGGLELGKPVDGVELDEDQAKVALL--RVPDRPGIAAQLFEELAAQGVNVDLIIQ 304

Length = 587

>gnl|CDD|131133 TIGR02078, AspKin_pair, Pyrococcus aspartate kinase subunit, putative

 Score = 89.5 bits (222), Expect = 1e-20
 Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 8/169 (4%)

Query: 33  ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRL 92
           E+  D+++  GE  SA + A      GI+ K +D  ++        N    D  +S++  
Sbjct: 94  EALRDYILSLGERLSAVIFAE-----GINGKVVDPWDIFFAKGDFGN-AFIDIKKSKRNA 147

Query: 93  EKWFSQSPSNTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGV 151
           +  +    S  I +  GF  +  +    TL R GSD+SA  +G LL +  V I +DV+G+
Sbjct: 148 KILYEVLESGKIPVIPGFYGNL-NGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGI 206

Query: 152 YSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIV 200
           ++ADP+ V  A ++  LSY+E    +  G   L  +       Y IP++
Sbjct: 207 FTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEYKIPVL 255

This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between [Amino acid biosynthesis, Aspartate family]. Length = 327

>gnl|CDD|181563 PRK08841, PRK08841, aspartate kinase; Validated

 Score = 83.6 bits (207), Expect = 2e-18
 Identities = 57/215 (26%), Positives = 89/215 (41%), Gaps = 21/215 (9%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWF 96
           D ++  GE  S  +LA  + K G   + +   +  IV     N       ++   + +  
Sbjct: 67  DVLLSAGEQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATIKHIDTS-TITELL 125

Query: 97  SQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADP 156
            Q     +I  GF     +   TTL R GSD +A  +   L A +  I+TDVDGVY+ DP
Sbjct: 126 EQD--QIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDP 183

Query: 157 RKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICR 216
           R V  A  L  + +     M+  GA VLH  ++    ++ +P+ + + F           
Sbjct: 184 RVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSF----------- 232

Query: 217 PPVDENEDEQIID----SPVKGFATIDNLALVNVE 247
              +  E   I        V G A   +LAL+ VE
Sbjct: 233 ---EVGEGTLIKGEAGTQAVCGIALQRDLALIEVE 264

Length = 392

>gnl|CDD|153193 cd04921, ACT_AKi-HSDH-ThrA-like_1, ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

 Score = 64.5 bits (158), Expect = 1e-13
 Identities = 23/37 (62%), Positives = 28/37 (75%)

Query: 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
           +AL+N+EGTGM GVPG A  IF A+   G NVI+ISQ
Sbjct: 1   VALINIEGTGMVGVPGIAARIFSALARAGINVILISQ 37

This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains were shown to be involved in allosteric activation. Also included in this CD is the first of two ACT domains of a tetrameric, monofunctional, threonine-sensitive, AK found in Methanococcus jannaschii and other related archaeal species. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 80

>gnl|CDD|239772 cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis

 Score = 57.9 bits (141), Expect = 4e-10
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           D +AA+    + A  +   T+VDGVY ADP+K  +A     +SY E  +    G  V+  
Sbjct: 135 DTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKK---GLKVMDA 191

Query: 187 RTIIPVMRYDIPIVIRNIFNLSVPG 211
             +    R  IPI+   +FN   PG
Sbjct: 192 TALTLCRRNKIPII---VFNGLKPG 213

Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Also included in this CD are the alpha and beta subunits of the Mo storage protein (MosA and MosB) characterized as an alpha4-beta4 octamer containing an ATP-dependent, polynuclear molybdenum-oxide cluster. These and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 229

>gnl|CDD|235773 PRK06291, PRK06291, aspartate kinase; Provisional

 Score = 55.3 bits (134), Expect = 9e-09
 Identities = 20/46 (43%), Positives = 27/46 (58%)

Query: 232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
           V+      ++ +V V G GMAG PG A  IF A+ + G N+ MISQ
Sbjct: 389 VRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQ 434

Length = 465

>gnl|CDD|153164 cd04892, ACT_AK-like_2, ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

 Score = 50.2 bits (121), Expect = 1e-08
 Identities = 21/36 (58%), Positives = 25/36 (69%)

Query: 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
           ALV+V G GM G PG A  IF A+ + G N+IMISQ
Sbjct: 1   ALVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36

This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli (EC), three different AK isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis (BS) isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as is a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium, and apparently, unique to cyanobacteria, are AKs with two tandem pairs of ACT domains, C-terminal to the catalytic domain. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this CD are the ACT domains of the Methylomicrobium alcaliphilum AK; the first enzyme of the ectoine biosynthetic pathway found in this bacterium and several other halophilic/halotolerant bacteria. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 65

>gnl|CDD|153196 cd04924, ACT_AK-Arch_2, ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

 Score = 49.0 bits (117), Expect = 3e-08
 Identities = 21/37 (56%), Positives = 26/37 (70%)

Query: 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
           +A+V V G+GM G PG A  +FGA+   G NVIMISQ
Sbjct: 1   VAVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQ 37

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 66

>gnl|CDD|234735 PRK00358, pyrH, uridylate kinase; Provisional

 Score = 52.4 bits (127), Expect = 4e-08
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 146 TDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIF 205
           T+VDGVY ADP+K  +A     L+Y E  E       V+    I       IPI+   +F
Sbjct: 156 TNVDGVYDADPKKDPDAKKYDRLTYDEVLEKGL---KVMDATAISLARDNKIPII---VF 209

Query: 206 NLSVPG 211
           N++ PG
Sbjct: 210 NMNKPG 215

Length = 231

>gnl|CDD|223602 COG0528, PyrH, Uridylate kinase [Nucleotide transport and metabolism]

 Score = 52.6 bits (127), Expect = 4e-08
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 127 DFSAAIMGALLRAHQVTIWT-DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           D +AA+    + A  +   T  VDGVY ADP+K  +A    TL+Y E  ++      V+ 
Sbjct: 142 DTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLK---VMD 198

Query: 186 PRTIIPVMRYDIPIVIRNIFN 206
           P          IPI++ NI  
Sbjct: 199 PTAFSLARDNGIPIIVFNINK 219

Length = 238

>gnl|CDD|213681 TIGR02075, pyrH_bact, uridylate kinase

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           D +AA+    + A  +   T+VDGVY+ADP+K  +A    T++Y EA +       V+  
Sbjct: 138 DTAAALRAIEINADVILKGTNVDGVYTADPKKNKDAKKYDTITYNEALKK---NLKVMDL 194

Query: 187 RTIIPVMRYDIPIVIRNIF 205
                    ++PIV+ NI 
Sbjct: 195 TAFALARDNNLPIVVFNID 213

This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076 [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 232

>gnl|CDD|239787 cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

 Score = 49.4 bits (119), Expect = 4e-07
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +D +AA+    + A  +   T VDGVY ADP+K   A     L+Y E       G  V+ 
Sbjct: 136 TDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSK---GLKVMD 192

Query: 186 PRTIIPVMRYDIPIVIRNIFNLSVPG 211
                     ++PIV   +FN++ PG
Sbjct: 193 ATAFTLCRDNNLPIV---VFNINEPG 215

The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 231

>gnl|CDD|153140 cd04868, ACT_AK-like, ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 19/36 (52%), Positives = 23/36 (63%)

Query: 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
           A V++ G GM G PG A  IF A+ + G NV MISQ
Sbjct: 1   AKVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ 36

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli (EC), three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis (BS) isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as is a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium, and apparently, unique to cyanobacteria, are aspartokinases with two tandem pairs of ACT domains, C-terminal to the catalytic domain. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this AK family CD are the ACT domains of the Methylomicrobium alcaliphilum AK; the first enzyme of the ectoine biosynthetic pathway found in this bacterium and several other halophilic/halotolerant bacteria. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 60

>gnl|CDD|239781 cd04248, AAK_AK-Ectoine, AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 42/182 (23%), Positives = 81/182 (44%), Gaps = 16/182 (8%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWF 96
           + +   GE  SA   A +++  G++ +++D          S  +   D +  E+  E + 
Sbjct: 134 ELLASLGEAHSAFNTALLLQNRGVNARFVDL---------SGWRDSGDMTLDERISEAFR 184

Query: 97  SQSPSNTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSAD 155
              P + + I TG+ A   + +     R  S+ + + +  L  A +  I  +   + SAD
Sbjct: 185 DIDPRDELPIVTGY-AKCAEGLMREFDRGYSEMTFSRIAVLTGASEAIIHKEFH-LSSAD 242

Query: 156 PRKVSEAV---ILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGI 212
           P+ V E     I RT +Y  A +++  G   +HP+    + +  IP+ ++N F    PG 
Sbjct: 243 PKLVGEDKARPIGRT-NYDVADQLANLGMEAIHPKAAKGLRQAGIPLRVKNTFEPDHPGT 301

Query: 213 MI 214
           +I
Sbjct: 302 LI 303

Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon. Length = 304

>gnl|CDD|173023 PRK14558, pyrH, uridylate kinase; Provisional

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +D +AA+    ++A  +   T VDG+Y  DP+K  +A  +  L++ EA +M   G  V+ 
Sbjct: 134 TDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKM---GLKVMD 190

Query: 186 PRTIIPVMRYDIPIVIRNIF 205
                   +Y I I++ N F
Sbjct: 191 TEAFSICKKYGITILVINFF 210

Length = 231

>gnl|CDD|233711 TIGR02076, pyrH_arch, uridylate kinase, putative

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS 177
           D  AA++    +A  +   T+VDGVY  DP+K  +A     L+ +E  E+ 
Sbjct: 118 DAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIV 168

This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 221

>gnl|CDD|239786 cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 20/51 (39%), Positives = 27/51 (52%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS 177
           D  AA++   L A  +   T+VDGVYS DPRK  +A     LS  E  ++ 
Sbjct: 118 DAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIV 168

The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 221

>gnl|CDD|236364 PRK09034, PRK09034, aspartate kinase; Reviewed

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 238 IDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
             +LA++ V G GM    G A  I  A+ +   N+ MI+Q
Sbjct: 382 EHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQ 421

Length = 454

>gnl|CDD|153194 cd04922, ACT_AKi-HSDH-ThrA_2, ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
           L+++ + G GMAG PG A   F A+     N+  I+Q
Sbjct: 1   LSILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ 37

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains were shown to be involved in allosteric activation. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 66

>gnl|CDD|239775 cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis

 Score = 40.1 bits (95), Expect = 6e-04
 Identities = 11/38 (28%), Positives = 24/38 (63%)

Query: 130 AAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRT 167
           +A++  L+ A  + + +DVDG+Y  +PR+  +A ++  
Sbjct: 148 SALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPE 185

G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requirement and the proline-triggered aggregation are greatly diminished and abolished, respectively, and more proline is needed for inhibition. Although plant and animal G5Ks are part of a bifunctional polypeptide, delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR; ProA); bacterial and yeast G5Ks are monofunctional single-polypeptide enzymes. In this CD, all three domain architectures are present: G5K, G5K+PUA, and G5K+G5PR. Length = 251

>gnl|CDD|235460 PRK05429, PRK05429, gamma-glutamyl kinase; Provisional

 Score = 40.1 bits (95), Expect = 9e-04
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRT 167
           D  +A++  L+ A  + + TDVDG+Y+ADPRK  +A ++  
Sbjct: 154 DTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPE 194

Length = 372

>gnl|CDD|223341 COG0263, ProB, Glutamate 5-kinase [Amino acid transport and metabolism]

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 12/39 (30%), Positives = 25/39 (64%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL 165
           D  +A++  L+ A  + + +D+DG+Y A+PR   +A ++
Sbjct: 152 DTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLI 190

Length = 369

>gnl|CDD|162163 TIGR01027, proB, glutamate 5-kinase

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 15/39 (38%), Positives = 25/39 (64%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL 165
           D  +A++  L+ A  + + TDVDG+Y ADPR   +A ++
Sbjct: 146 DTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLI 184

Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family [Amino acid biosynthesis, Glutamate family]. Length = 363

>gnl|CDD|236376 PRK09084, PRK09084, aspartate kinase III; Validated

 Score = 39.4 bits (93), Expect = 0.002
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
           + LALV + G  ++   G A  +FG ++    N+ MI  
Sbjct: 382 EGLALVALIGNNLSKACGVAKRVFGVLEPF--NIRMICY 418

Length = 448

>gnl|CDD|239788 cd04255, AAK_UMPK-MosAB, AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQE 172
           +D  A ++  ++ A  +    D DG+Y+ADP+K  +A  +  +S  E
Sbjct: 163 TDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAE 209

The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 262

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	277
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	100.0
PLN02551	521	aspartokinase	100.0
PRK09084	448	aspartate kinase III; Validated	100.0
PRK09034	454	aspartate kinase; Reviewed	100.0
PRK06291	465	aspartate kinase; Provisional	100.0
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	100.0
PRK09181	475	aspartate kinase; Validated	100.0
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	100.0
PRK05925	440	aspartate kinase; Provisional	100.0
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	100.0
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	100.0
cd04245	288	AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Ki	100.0
KOG0456	559	consensus Aspartate kinase [Amino acid transport a	100.0
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	100.0
PRK08841	392	aspartate kinase; Validated	100.0
cd04258	292	AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Ki	100.0
cd04257	294	AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfa	100.0
cd04243	293	AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kina	100.0
PRK08210	403	aspartate kinase I; Reviewed	100.0
cd04247	306	AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfa	100.0
cd04244	298	AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kina	100.0
PRK06635	404	aspartate kinase; Reviewed	100.0
cd04259	295	AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Super	100.0
PRK08373	341	aspartate kinase; Validated	100.0
PRK07431	587	aspartate kinase; Provisional	100.0
cd04248	304	AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase S	100.0
TIGR02078	327	AspKin_pair Pyrococcus aspartate kinase subunit, p	100.0
cd04261	239	AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kina	100.0
cd04260	244	AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase	100.0
cd04234	227	AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK)	100.0
cd04246	239	AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kina	100.0
cd02115	248	AAK Amino Acid Kinases (AAK) superfamily, catalyti	99.97
PRK14558	231	pyrH uridylate kinase; Provisional	99.95
cd04239	229	AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-lik	99.94
cd04242	251	AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K	99.94
PRK00358	231	pyrH uridylate kinase; Provisional	99.93
PF00696	242	AA_kinase: Amino acid kinase family Match to Gluta	99.93
PRK14557	247	pyrH uridylate kinase; Provisional	99.92
PRK12314	266	gamma-glutamyl kinase; Provisional	99.92
cd04254	231	AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbi	99.92
COG0528	238	PyrH Uridylate kinase [Nucleotide transport and me	99.92
PRK14556	249	pyrH uridylate kinase; Provisional	99.91
TIGR02075	233	pyrH_bact uridylate kinase. This protein, also cal	99.91
PRK13402	368	gamma-glutamyl kinase; Provisional	99.9
PRK05429	372	gamma-glutamyl kinase; Provisional	99.88
cd04253	221	AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMP	99.88
TIGR01027	363	proB glutamate 5-kinase. Bacterial ProB proteins h	99.87
TIGR02076	221	pyrH_arch uridylate kinase, putative. This family	99.86
cd04241	252	AAK_FomA-like AAK_FomA-like: This CD includes a fo	99.85
PRK14058	268	acetylglutamate/acetylaminoadipate kinase; Provisi	99.85
cd04250	279	AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase	99.83
cd04249	252	AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kina	99.81
PRK00942	283	acetylglutamate kinase; Provisional	99.81
TIGR00761	231	argB acetylglutamate kinase. This model describes	99.8
cd04238	256	AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate	99.79
PLN02512	309	acetylglutamate kinase	99.79
cd04255	262	AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes th	99.79
COG0263	369	ProB Glutamate 5-kinase [Amino acid transport and	99.78
CHL00202	284	argB acetylglutamate kinase; Provisional	99.78
cd04251	257	AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kina	99.78
PTZ00489	264	glutamate 5-kinase; Provisional	99.78
cd04256	284	AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase	99.77
PLN02418	718	delta-1-pyrroline-5-carboxylate synthase	99.77
COG1608	252	Predicted archaeal kinase [General function predic	99.69
COG0548	265	ArgB Acetylglutamate kinase [Amino acid transport	99.68
TIGR01092	715	P5CS delta l-pyrroline-5-carboxylate synthetase. T	99.64
cd04236	271	AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NA	99.57
cd04235	308	AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes bot	99.56
PRK12353	314	putative amino acid kinase; Reviewed	99.56
cd04252	248	AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutam	99.55
TIGR00746	310	arcC carbamate kinase. The seed alignment for this	99.51
cd04237	280	AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG)	99.5
PRK05279	441	N-acetylglutamate synthase; Validated	99.48
TIGR01890	429	N-Ac-Glu-synth amino-acid N-acetyltransferase. Thi	99.44
PRK12686	312	carbamate kinase; Reviewed	99.43
cd04240	203	AAK_UC AAK_UC: Uncharacterized (UC) amino acid kin	99.41
PRK12454	313	carbamate kinase-like carbamoyl phosphate syntheta	99.38
PRK12354	307	carbamate kinase; Reviewed	99.37
KOG1154	285	consensus Gamma-glutamyl kinase [Amino acid transp	99.31
PRK09411	297	carbamate kinase; Reviewed	99.29
PRK12352	316	putative carbamate kinase; Reviewed	99.21
PRK04531	398	acetylglutamate kinase; Provisional	99.11
PLN02825	515	amino-acid N-acetyltransferase	99.09
COG2054	212	Uncharacterized archaeal kinase related to asparto	98.93
COG0549	312	ArcC Carbamate kinase [Amino acid transport and me	98.54
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	98.2
cd04937	64	ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela	98.16
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	98.16
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	98.13
cd04915	66	ACT_AK-Ectoine_2 ACT domains located C-terminal to	98.1
cd04924	66	ACT_AK-Arch_2 ACT domains of a monofunctional aspa	98.02
PRK06291	465	aspartate kinase; Provisional	98.01
cd04916	66	ACT_AKiii-YclM-BS_2 ACT domains located C-terminal	97.96
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	97.95
cd04933	78	ACT_AK1-AT_1 ACT domains located C-terminal to the	97.92
PLN02551	521	aspartokinase	97.91
cd04918	65	ACT_AK1-AT_2 ACT domains located C-terminal to the	97.91
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	97.9
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	97.89
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	97.87
cd04934	73	ACT_AK-Hom3_1 CT domains located C-terminal to the	97.85
cd04912	75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	97.8
PRK09034	454	aspartate kinase; Reviewed	97.73
cd04921	80	ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunc	97.71
cd04890	62	ACT_AK-like_1 ACT domains found C-terminal to the	97.7
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	97.69
cd04936	63	ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-	97.6
PRK06635	404	aspartate kinase; Reviewed	97.59
cd04892	65	ACT_AK-like_2 ACT domains C-terminal to the cataly	97.57
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	97.56
cd04868	60	ACT_AK-like ACT domains C-terminal to the catalyti	97.56
PRK05925	440	aspartate kinase; Provisional	97.54
cd04923	63	ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-	97.53
PRK09181	475	aspartate kinase; Validated	97.48
cd04917	64	ACT_AKiii-LysC-EC_2 ACT domains located C-terminal	97.46
PRK08210	403	aspartate kinase I; Reviewed	97.43
cd04920	63	ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AK	97.33
PRK07431	587	aspartate kinase; Provisional	97.31
PRK09084	448	aspartate kinase III; Validated	97.31
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	97.29
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	97.04
PRK08841	392	aspartate kinase; Validated	96.91
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	96.89
cd04914	67	ACT_AKi-DapG-BS_1 ACT domains of the diaminopimela	96.83
KOG0456	559	consensus Aspartate kinase [Amino acid transport a	96.7
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	96.65
KOG2436	520	consensus Acetylglutamate kinase/acetylglutamate s	96.28
COG3830	90	ACT domain-containing protein [Signal transduction	95.86
cd04910	71	ACT_AK-Ectoine_1 ACT domains located C-terminal to	95.43
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	94.94
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	92.59
PRK00194	90	hypothetical protein; Validated	91.25
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	90.94
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	90.86
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	90.79
cd04911	76	ACT_AKiii-YclM-BS_1 ACT domains located C-terminal	89.93
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	89.79
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	89.29
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	88.25
PRK04435	147	hypothetical protein; Provisional	86.37
COG1058	255	CinA Predicted nucleotide-utilizing enzyme related	84.39
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	82.67
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	81.95
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	81.62
cd02116	60	ACT ACT domains are commonly involved in specifica	80.19

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=100.00  E-value=3.4e-59  Score=447.01  Aligned_cols=241  Identities=41%  Similarity=0.633  Sum_probs=224.9

Q ss_pred             cCCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEec
Q 023778           28 SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIAT  107 (277)
Q Consensus        28 ~~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~  107 (277)
                      .++++++.+|+++|+||++|+.+++.+|+++|++|.+++++++++.+++.++++.+....+...+..+++  .+.|||++
T Consensus       103 ~~~~~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~~a~i~~~~~~~~l~~~~~--~~~v~Vv~  180 (447)
T COG0527         103 LGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERRLLRLLE--EGKVPVVA  180 (447)
T ss_pred             ccCCCHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCcccccccchhhhhhhHHHHhc--CCcEEEec
Confidence            3578999999999999999999999999999999999999999999988888877665444333777776  78999999


Q ss_pred             CccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHH
Q 023778          108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR  187 (277)
Q Consensus       108 G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~  187 (277)
                      ||+|.+++|+++|||||||||+|++||.+|+|+++.||||||||||+|||++|+|++|++|||+||.||+++|++++||+
T Consensus       181 GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~Ar~i~~isyeEa~ELA~~GAkVLHpr  260 (447)
T COG0527         181 GFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDARLLPEISYEEALELAYLGAKVLHPR  260 (447)
T ss_pred             CceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCcceEcCccCHHHHHHHHHCCchhcCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHh
Q 023778          188 TIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD  267 (277)
Q Consensus       188 a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~  267 (277)
                      |++|+++++||++|+|+++|+.+||+|.+...+       ..+.+++|+.++|+++|++.|.+|...+|+++++|..|++
T Consensus       261 av~pa~~~~Ip~~i~~t~~p~~~GTlI~~~~~~-------~~~~v~gIa~~~~~~~i~v~~~~~~~~~g~~a~vf~~l~~  333 (447)
T COG0527         261 AVEPAMRSGIPLRIKNTFNPDAPGTLITAETES-------DEPVVKGIALDDNVALITVSGPGMNGMVGFAARVFGILAE  333 (447)
T ss_pred             HHHHHHhcCCcEEEEecCCCCCCceEEecCCcC-------CCCceEEEEeCCCeEEEEEEccCccccccHHHHHHHHHHH
Confidence            999999999999999999999999999987543       1268999999999999999999999999999999999999


Q ss_pred             CCCcEEEEeC
Q 023778          268 VGANVIMISQ  277 (277)
Q Consensus       268 ~~I~V~~isq  277 (277)
                      +||+|+||+|
T Consensus       334 ~~i~v~~I~q  343 (447)
T COG0527         334 AGINVDLITQ  343 (447)
T ss_pred             cCCcEEEEEe
Confidence            9999999987

>PLN02551 aspartokinase

Probab=100.00  E-value=4.4e-58  Score=447.22  Aligned_cols=254  Identities=27%  Similarity=0.473  Sum_probs=229.7

Q ss_pred             HHHHHHHHHhhhcC-----CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHH
Q 023778           16 IRSTYNFLSNVDSG-----HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEK   90 (277)
Q Consensus        16 i~~~~~~L~~~~~~-----~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~   90 (277)
                      +...++.|++++++     +++++.+|+++|+||+||+++++.+|++.|+++.++|++++++++++.|+++.++ +.+.+
T Consensus       140 ~~~~~~~l~~ll~~i~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~-~~~~~  218 (521)
T PLN02551        140 VEKLLDELEQLLKGIAMMKELTPRTRDYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADIL-EATYP  218 (521)
T ss_pred             HHHHHHHHHHHHHhhhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchh-hhhHH
Confidence            44556677777664     6789999999999999999999999999999999999999977888888877665 45556


Q ss_pred             HHHHHhhc---CCCceEEecCccccC-CCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEe
Q 023778           91 RLEKWFSQ---SPSNTIIATGFIAST-PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILR  166 (277)
Q Consensus        91 ~i~~~l~~---~~~~VpVv~G~i~~~-~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~  166 (277)
                      .+++.+..   ..+.|||++||+|.+ .+|+++|||||||||+|+++|++|+|+++.||||||||||+|||.+|+|++++
T Consensus       219 ~l~~~l~~~~~~~~~v~Vv~GFig~~~~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~  298 (521)
T PLN02551        219 AVAKRLHGDWIDDPAVPVVTGFLGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVP  298 (521)
T ss_pred             HHHHHHHhhhccCCeEEEEcCccccCCCCCcEEecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEec
Confidence            66665531   245899999999999 89999999999999999999999999999999999999999999999999999


Q ss_pred             eeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEE
Q 023778          167 TLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNV  246 (277)
Q Consensus       167 ~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isv  246 (277)
                      +|||+||.||+++|++++||+|+.||++++||++|+|+++|+.+||+|.+....       ....+++|+.++|+++|+|
T Consensus       299 ~lsy~Ea~elA~~GakVlhp~ai~pa~~~~Ipi~vknt~~p~~~GT~I~~~~~~-------~~~~v~~It~~~~v~li~i  371 (521)
T PLN02551        299 YLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPTAPGTLITKTRDM-------SKAVLTSIVLKRNVTMLDI  371 (521)
T ss_pred             ccCHHHHHHHHhCCCcccCHHHHHHHHHCCceEEEEecCCCCCCCcEEeccccc-------CCCcccceecCCCeEEEEE
Confidence            999999999999999999999999999999999999999999999999865321       2357999999999999999


Q ss_pred             ecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          247 EGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       247 vg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      .|.+|.+.+|+++++|+.|+++||+|+||+|
T Consensus       372 ~~~~m~~~~g~~arvf~~l~~~~I~Vd~Iss  402 (521)
T PLN02551        372 VSTRMLGQYGFLAKVFSTFEDLGISVDVVAT  402 (521)
T ss_pred             ecCCCCCcccHHHHHHHHHHHcCCcEEEEec
Confidence            9999999999999999999999999999986

>PRK09084 aspartate kinase III; Validated

Probab=100.00  E-value=6.7e-55  Score=419.91  Aligned_cols=254  Identities=30%  Similarity=0.523  Sum_probs=231.5

Q ss_pred             HHHHHHHHHHHhhhcC---CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHH
Q 023778           14 EFIRSTYNFLSNVDSG---HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEK   90 (277)
Q Consensus        14 ~~i~~~~~~L~~~~~~---~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~   90 (277)
                      +.++..++.|++++++   +++++.+|.++|+||+||+++++.+|+++|+++.++++++++ .+++.|++++++++.+..
T Consensus        84 ~~i~~~~~~l~~l~~~~~~~~~~~~~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~i-~t~~~~~~~~~~~~~~~~  162 (448)
T PRK09084         84 EEIERLLENITVLAEAASLATSPALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKVM-RTDDRFGRAEPDVAALAE  162 (448)
T ss_pred             HHHHHHHHHHHHHHHhhhhcCChhhhhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHeE-EecCCCCcccccHHHHHH
Confidence            4577888889988877   478899999999999999999999999999999999999984 566778877888766766


Q ss_pred             HHHHHhhc--CCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeee
Q 023778           91 RLEKWFSQ--SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL  168 (277)
Q Consensus        91 ~i~~~l~~--~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~i  168 (277)
                      .+.+.+.+  ..+ |||++||+|.+.+|+++||||||||++|+++|.+|+|+++++|||||||||+|||++|+|+++++|
T Consensus       163 ~~~~~~~~~~~~~-v~Vv~Gf~g~~~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~i  241 (448)
T PRK09084        163 LAQEQLLPLLAEG-VVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEI  241 (448)
T ss_pred             HHHHHHHHhhcCC-cEEecCeeecCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEcccC
Confidence            55554432  245 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEec
Q 023778          169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEG  248 (277)
Q Consensus       169 s~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg  248 (277)
                      +|+||.+|+++|++++||+++.++++++||++|+|+++|+.+||+|.+...        ..+.+++|+.++|+++|+|.+
T Consensus       242 s~~ea~ela~~Ga~vlh~~~~~~~~~~~i~i~i~~~~~~~~~GT~I~~~~~--------~~~~v~~it~~~~i~lItv~~  313 (448)
T PRK09084        242 SFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDPEAGGTWICNDTE--------NPPLFRAIALRRNQTLLTLHS  313 (448)
T ss_pred             CHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEEeCCCCCCCceEEecCCC--------CCCeeEEEEeeCCEEEEEEec
Confidence            999999999999999999999999999999999999999999999987532        124799999999999999999


Q ss_pred             CCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          249 TGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       249 ~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      .+|.+.+|+++++|+.|++++|+|+||+|
T Consensus       314 ~~~~~~~g~~a~if~~l~~~~I~Vd~I~s  342 (448)
T PRK09084        314 LNMLHARGFLAEVFGILARHKISVDLITT  342 (448)
T ss_pred             CCCCccccHHHHHHHHHHHcCCeEEEEec
Confidence            99999999999999999999999999986

>PRK09034 aspartate kinase; Reviewed

Probab=100.00  E-value=6.5e-55  Score=420.78  Aligned_cols=250  Identities=27%  Similarity=0.421  Sum_probs=224.0

Q ss_pred             HHHHHHHHhhhcCCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHh
Q 023778           17 RSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWF   96 (277)
Q Consensus        17 ~~~~~~L~~~~~~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l   96 (277)
                      ..+++.|...++ ..+++.+|.++|+||+||+.+++.+|+++|+++.+++++++++++++.++++.++. .+.+.+.+++
T Consensus        94 ~~~l~~l~~~~~-~~~~~~~d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~~~~~a~i~~-~~~~~~~~~~  171 (454)
T PRK09034         94 EEILEHLANLAS-RNPDRLLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLP-ESYDNLKKLR  171 (454)
T ss_pred             HHHHHHHHHhhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecCCcCceeEcH-hhHHHHHHHH
Confidence            344444444443 46788999999999999999999999999999999999999777888888766653 3556777666


Q ss_pred             hcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHH
Q 023778           97 SQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM  176 (277)
Q Consensus        97 ~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l  176 (277)
                      .  .+.|||++||+|.+.+|+++|||||||||+|+++|.+|+|+++++|||||||||+|||.+|+|+++++|||+||.+|
T Consensus       172 ~--~~~v~Vv~GFig~~~~g~~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~el  249 (454)
T PRK09034        172 D--RDEKLVIPGFFGVTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMREL  249 (454)
T ss_pred             h--cCCEEEecCccccCCCCCEEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHH
Confidence            5  56799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchh
Q 023778          177 SYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPG  256 (277)
Q Consensus       177 ~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~g  256 (277)
                      +++|+++|||+|+.+|++++||++|+|+++|+.+||+|.+.....      ....+++|+.++|+++|++.+.+|.+.+|
T Consensus       250 a~~Gakvlhp~ai~~a~~~~Ipi~v~~~~~p~~~GT~I~~~~~~~------~~~~Vk~It~~~~i~~Itv~~~~~~~~~g  323 (454)
T PRK09034        250 SYAGFSVFHDEALIPAYRGGIPINIKNTNNPEDPGTLIVPDRDNK------NKNPITGIAGDKGFTSIYISKYLMNREVG  323 (454)
T ss_pred             HhCCcccCCHHHHHHHHHcCCCEEEEcCCCCCCCccEEEeccccC------ccccceEEEecCCEEEEEEccCCCCCCcc
Confidence            999999999999999999999999999999999999998654211      12479999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEe
Q 023778          257 TANAIFGAVKDVGANVIMIS  276 (277)
Q Consensus       257 v~a~if~~L~~~~I~V~~is  276 (277)
                      +++++|+.|+++||+|+|++
T Consensus       324 ~~a~if~~la~~~I~Vd~i~  343 (454)
T PRK09034        324 FGRKVLQILEDHGISYEHMP  343 (454)
T ss_pred             HHHHHHHHHHHcCCeEEEEc
Confidence            99999999999999999984

>PRK06291 aspartate kinase; Provisional

Probab=100.00  E-value=3.9e-53  Score=409.71  Aligned_cols=255  Identities=43%  Similarity=0.656  Sum_probs=229.2

Q ss_pred             HHHHHHHHHHHhhhcC-----CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCC---c
Q 023778           14 EFIRSTYNFLSNVDSG-----HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPD---F   85 (277)
Q Consensus        14 ~~i~~~~~~L~~~~~~-----~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~---~   85 (277)
                      +.+...++.|++++.+     +++++.+|.++|+||+||+++++.+|+++|++|.+++++++.+++.+.++.+.++   +
T Consensus        95 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~~~~~~~  174 (465)
T PRK06291         95 KTIDSRIEELEKALVGVSYLGELTPRSRDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTY  174 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCChHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEchHHCcEEecCCCCceeechhhH
Confidence            3455667777777763     5678899999999999999999999999999999999999877787777765443   3


Q ss_pred             hHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEE
Q 023778           86 SESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (277)
Q Consensus        86 ~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i  165 (277)
                      ....+.++.+++  .+.|||++||+|.+++|+++|+||||||++|+++|.+|+|+++++||||||||++||+.+|+|+++
T Consensus       175 ~~~~~~~~~ll~--~~~vpVv~Gfig~~~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i  252 (465)
T PRK06291        175 ERVKERLEPLLK--EGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVI  252 (465)
T ss_pred             HHHHHHHHHHhh--cCcEEEEeCcEEcCCCCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCCCCCCCCCCCCCCeEc
Confidence            334455666666  789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEE
Q 023778          166 RTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVN  245 (277)
Q Consensus       166 ~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Is  245 (277)
                      ++++|+|+.+++++|++++||+|+.+|+++|||++|.|+++|+++||+|.+....       ..+.+++|++++|+++|+
T Consensus       253 ~~l~~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~~~gt~i~~~~~~-------~~~~V~~It~~~~valIs  325 (465)
T PRK06291        253 PKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNPEFPGTLITSDSES-------SKRVVKAVTLIKNVALIN  325 (465)
T ss_pred             cccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEecCCCCCCCceEEEecccc-------cCcccceEEeeCCEEEEE
Confidence            9999999999999999999999999999999999999999999999999865321       235799999999999999


Q ss_pred             EecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          246 VEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       246 vvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      ++|.+|.+.+|+++++|++|+++||+|+|++|
T Consensus       326 I~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq  357 (465)
T PRK06291        326 ISGAGMVGVPGTAARIFSALAEEGVNVIMISQ  357 (465)
T ss_pred             EeCCCCCCCccHHHHHHHHHHHCCCcEEEEEe
Confidence            99999999999999999999999999999987

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=100.00  E-value=1.8e-53  Score=432.75  Aligned_cols=254  Identities=30%  Similarity=0.474  Sum_probs=229.4

Q ss_pred             HHHHHHHHHHHhhhcCCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHH
Q 023778           14 EFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLE   93 (277)
Q Consensus        14 ~~i~~~~~~L~~~~~~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~   93 (277)
                      +.++..++.|+++++++++++.+|.++|+||+||+++++.+|+++|+++.++++++++. +++. +...+++..+.++++
T Consensus       100 ~~i~~~~~~l~~~l~~~~~~~~~d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~i~-~~~~-~~~~i~~~~~~~~l~  177 (810)
T PRK09466        100 SRLISDLERLAALLDGGINDAQYAEVVGHGEVWSARLMAALLNQQGLPAAWLDARSFLR-AERA-AQPQVDEGLSYPLLQ  177 (810)
T ss_pred             HHHHHHHHHHHHHhhccCCchhhhheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHhee-cCCC-CCcccchhhhHHHHH
Confidence            34667788888888899999999999999999999999999999999999999999843 4333 344565556678888


Q ss_pred             HHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHH
Q 023778           94 KWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEA  173 (277)
Q Consensus        94 ~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~  173 (277)
                      +++....+.|||++||+|.+.+|+++|+|||||||+|+++|++|+|++++||||||||||+|||.+|+|+++++|||+||
T Consensus       178 ~~~~~~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea  257 (810)
T PRK09466        178 QLLAQHPGKRLVVTGFISRNEAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEA  257 (810)
T ss_pred             HHHhccCCeEEEeeCccccCCCCCEEEcCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHH
Confidence            88864345899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCC
Q 023778          174 WEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAG  253 (277)
Q Consensus       174 ~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~  253 (277)
                      .||+++|++++||+|++|+++++||++|+|+|+|+.+||+|.....        ....++.|+..+|+++|++.+.+|.+
T Consensus       258 ~ela~~GakVlHp~ti~pa~~~~Ipi~V~ntf~p~~~GT~I~~~~~--------~~~~v~~It~~~~v~~i~i~~~~~~g  329 (810)
T PRK09466        258 SELARLAAPVLHARTLQPVSGSDIDLQLRCSYQPEQGSTRIERVLA--------SGTGARIVTSLDDVCLIELQVPASHD  329 (810)
T ss_pred             HHHHHcCccccCHHHHHHHHHcCCeEEEecCCCCCCCceEEecCcc--------cccceeeeeccCCEEEEEEecCCcCC
Confidence            9999999999999999999999999999999999999999975321        12367899999999999999999889


Q ss_pred             chhHHHHHHHHHHhCCCcEEEEeC
Q 023778          254 VPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       254 ~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      .+|+++++|++|++++|+|+||+|
T Consensus       330 ~~g~~~~if~~l~~~~I~v~~i~~  353 (810)
T PRK09466        330 FKLAQKELDQLLKRAQLRPLAVGV  353 (810)
T ss_pred             cchHHHHHHHHHHHCCCeEEEEEe
Confidence            999999999999999999999975

>PRK09181 aspartate kinase; Validated

Probab=100.00  E-value=1.2e-52  Score=405.55  Aligned_cols=243  Identities=21%  Similarity=0.295  Sum_probs=213.3

Q ss_pred             HHHHHHHHHhhhc------CCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHH
Q 023778           16 IRSTYNFLSNVDS------GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE   89 (277)
Q Consensus        16 i~~~~~~L~~~~~------~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~   89 (277)
                      ++..++.|+++++      ++++++.+|+++|+||+||+++|+.+|+++|++|.++|+..+.. +.        ++ .+.
T Consensus       113 ~~~~l~~l~~~l~~~~~~l~e~~~~~~D~l~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~-~~--------~~-~~~  182 (475)
T PRK09181        113 ARACLIDLQRLCAYGHFSLDEHLLTVREMLASIGEAHSAFNTALLLQNRGVNARFVDLTGWDD-DD--------PL-TLD  182 (475)
T ss_pred             HHHHHHHHHHHHhcCcchhhccChhHhHHHhhHhHHHHHHHHHHHHHhCCCCeEEeccccccC-Cc--------cc-chH
Confidence            3566667776654      47899999999999999999999999999999999999866532 11        11 134


Q ss_pred             HHHHHHhhc--CCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCC--CCCeEE
Q 023778           90 KRLEKWFSQ--SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKV--SEAVIL  165 (277)
Q Consensus        90 ~~i~~~l~~--~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~--~~a~~i  165 (277)
                      +++++.+..  ..+.|||++||+ .+.+|+++|||||||||+|+++|++|+|++++|||||+ |||+|||.+  |+|+++
T Consensus       183 ~~i~~~l~~~~~~~~v~Vv~GF~-~~~~G~itTLGRGGSDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i  260 (475)
T PRK09181        183 ERIKKAFKDIDVTKELPIVTGYA-KCKEGLMRTFDRGYSEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPI  260 (475)
T ss_pred             HHHHHHHhhhccCCcEEEecCCc-CCCCCCEEecCCChHHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEc
Confidence            667776652  246799999996 57789999999999999999999999999999999996 999999999  699999


Q ss_pred             eeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEE
Q 023778          166 RTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVN  245 (277)
Q Consensus       166 ~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Is  245 (277)
                      ++|||+||.||+++|++|+||+|++||++++||++|+|+++|+.+||+|.+....       ..+.+++|+..+|+++|+
T Consensus       261 ~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ipi~V~nt~~p~~~GT~I~~~~~~-------~~~~ik~It~~~~~~~i~  333 (475)
T PRK09181        261 GRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRIKNTFEPEHPGTLITKDYVS-------EQPRVEIIAGSDKVFALE  333 (475)
T ss_pred             CccCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCCCCCCeEEecCccc-------ccccceeEeccCCEEEEE
Confidence            9999999999999999999999999999999999999999999999999864321       234689999999999999


Q ss_pred             EecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          246 VEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       246 vvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      |.|.+|.+.+|+++++|+.|++++|+|+|++|
T Consensus       334 i~~~~~~~~~g~~~~if~~l~~~~i~v~~i~s  365 (475)
T PRK09181        334 VFDQDMVGEDGYDLEILEILTRHKVSYISKAT  365 (475)
T ss_pred             EcCCCCCCcchHHHHHHHHHHHcCCeEEEEEe
Confidence            99999999999999999999999999999875

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=100.00  E-value=2.5e-52  Score=426.43  Aligned_cols=255  Identities=40%  Similarity=0.678  Sum_probs=234.9

Q ss_pred             HHHHHHHHHHHhhhcC-----CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHH
Q 023778           14 EFIRSTYNFLSNVDSG-----HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES   88 (277)
Q Consensus        14 ~~i~~~~~~L~~~~~~-----~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~   88 (277)
                      +.++..++.|++++++     +++++.+|+++|+||+||+++++.+|+++|++|.++++++++ .+++.++++.++++.+
T Consensus        92 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i-~t~~~~~~~~~~~~~~  170 (819)
T PRK09436         92 AKVDQEFAQLKDILHGISLLGECPDSVNAAIISRGERLSIAIMAAVLEARGHDVTVIDPRELL-LADGHYLESTVDIAES  170 (819)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCChhhhhheeeHHHHHHHHHHHHHHHhCCCCeEEECHHHeE-EecCCCCCceechHhh
Confidence            5677778888887764     678899999999999999999999999999999999999985 4566777778888788


Q ss_pred             HHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeee
Q 023778           89 EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL  168 (277)
Q Consensus        89 ~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~i  168 (277)
                      .+.+++++.. .+.|||++||+|.+.+|+++|+||||||++|+++|.+++|+++++|||||||||+||+.+|+|++++++
T Consensus       171 ~~~i~~~~~~-~~~v~Vv~Gfig~~~~G~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~i  249 (819)
T PRK09436        171 TRRIAASFIP-ADHVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSL  249 (819)
T ss_pred             HHHHHHHHhc-CCcEEEecCcccCCCCCCEEEeCCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEe
Confidence            8888888752 478999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEec
Q 023778          169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEG  248 (277)
Q Consensus       169 s~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg  248 (277)
                      +|+|+.+|+++|++++||+|+.+|+++|||++|+|+++|+.+||+|++....       ..+++++|++++|+++|+|+|
T Consensus       250 sy~ea~el~~~G~kvlhp~a~~~a~~~~Ipi~i~n~~~p~~~GT~I~~~~~~-------~~~~Vk~It~~~dvalIsV~G  322 (819)
T PRK09436        250 SYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQAPGTLIGAESDE-------DSLPVKGISNLNNMAMFNVSG  322 (819)
T ss_pred             cHHHHHHHHhcCCccchHHHHHHHHHCCceEEEccCCCCCCCceEEEecCcc-------cccccceEEEeCCEEEEEEEc
Confidence            9999999999999999999999999999999999999999999999865321       235799999999999999999


Q ss_pred             CCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          249 TGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       249 ~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      .+|.+.||+++|+|++|+++||+|+|++|
T Consensus       323 ~gm~~~~G~~arIf~~La~~gI~V~mIsq  351 (819)
T PRK09436        323 PGMKGMVGMASRVFAALSRAGISVVLITQ  351 (819)
T ss_pred             CCCCCCcCHHHHHHHHHHHCCCcEEEEEc
Confidence            99999999999999999999999999987

>PRK05925 aspartate kinase; Provisional

Probab=100.00  E-value=1.4e-50  Score=388.15  Aligned_cols=248  Identities=25%  Similarity=0.409  Sum_probs=218.1

Q ss_pred             HHHHHHhhh-cCCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhh
Q 023778           19 TYNFLSNVD-SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFS   97 (277)
Q Consensus        19 ~~~~L~~~~-~~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~   97 (277)
                      .++.|++++ .++++++.+|.++|+||+||+++++.+|+++|+++.+++++++ +.++++|+++.++++.+.+.+.....
T Consensus        84 ~~~~L~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~-i~t~~~~~~a~~~~~~~~~~~~~~~~  162 (440)
T PRK05925         84 WWERLEHFEDVEEISSEDQARILAIGEDISASLICAYCCTYVLPLEFLEARQV-ILTDDQYLRAVPDLALMQTAWHELAL  162 (440)
T ss_pred             HHHHHHHHHHhCcCCchhhhhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHh-EeecCCccccccCHHHHHHHHHHhhc
Confidence            344555555 3667888999999999999999999999999999999999998 45667788778887666666655442


Q ss_pred             cCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHH
Q 023778           98 QSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS  177 (277)
Q Consensus        98 ~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~  177 (277)
                       ..+.|||++||+|.+.+|+++|+||||||++|+++|.+++|+++++|||||||||+||+.+|+|++|++++|+|+.+|+
T Consensus       163 -~~~~v~Vv~GF~g~~~~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~ela  241 (440)
T PRK05925        163 -QEDAIYIMQGFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNLA  241 (440)
T ss_pred             -cCCcEEEecCcceeCCCCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHHH
Confidence             2568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhH
Q 023778          178 YFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGT  257 (277)
Q Consensus       178 ~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv  257 (277)
                      ++|++++||.++++|+++|||++|.|+++|+.+||+|.+.....     ...+.+++|+.++|+++|++.+..  ..+++
T Consensus       242 ~~Ga~vl~~~~~~~a~~~~Ipi~I~~~~~p~~~GT~i~~~~~~~-----~~~~~ik~It~~~~~~~i~v~~~~--~~~~~  314 (440)
T PRK05925        242 SFGAKVLHPPMLKPCVRAGIPIFVTSTFDVTKGGTWIYASDKEV-----SYEPRIKALSLKQNQALWSVDYNS--LGLVR  314 (440)
T ss_pred             hCCCCcCCHHHHHHHHHCCCcEEEecCCCCCCCccEEecCCccc-----cCCCceEEEEEeCCEEEEEEecCC--cchhH
Confidence            99999999999999999999999999999999999998743110     023469999999999999997643  35788


Q ss_pred             HHHHHHHHHhCCCcEEEE
Q 023778          258 ANAIFGAVKDVGANVIMI  275 (277)
Q Consensus       258 ~a~if~~L~~~~I~V~~i  275 (277)
                      ++++|+.|+++||+|+++
T Consensus       315 ~~~if~~l~~~~I~vd~i  332 (440)
T PRK05925        315 LEDVLGILRSLGIVPGLV  332 (440)
T ss_pred             HHHHHHHHHHcCCcEEEE
Confidence            999999999999999887

>TIGR00657 asp_kinases aspartate kinase

Probab=100.00  E-value=1.1e-49  Score=383.52  Aligned_cols=237  Identities=36%  Similarity=0.563  Sum_probs=218.1

Q ss_pred             ChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccc
Q 023778           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (277)
Q Consensus        32 ~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~  111 (277)
                      +++.+|.++|+||+||+.+++++|+++|++++++++.+..+++++++++..+......+.+.++++  .+.|||++||+|
T Consensus       101 ~~~~~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~~~~~~~~~~~~l~~~l~--~~~vpVv~G~~g  178 (441)
T TIGR00657       101 KPREMDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARVIIEILTERLEPLLE--EGIIPVVAGFQG  178 (441)
T ss_pred             CcchHhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCceeecHhhhHHHHHHHHh--cCCEEEEeCcEe
Confidence            467889999999999999999999999999999999998888877776544334556788999887  789999999999


Q ss_pred             cCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHH
Q 023778          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIP  191 (277)
Q Consensus       112 ~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~  191 (277)
                      .+.+|+++++||||||++|+++|.+|+|+++++||||||||++||+.+|+++++++++|+|+.+|+++|++++||+|+.+
T Consensus       179 ~~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~is~~ea~el~~~G~~v~~~~a~~~  258 (441)
T TIGR00657       179 ATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEP  258 (441)
T ss_pred             eCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCccCHHHHHHHHhcCCcccCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCc
Q 023778          192 VMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGAN  271 (277)
Q Consensus       192 a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~  271 (277)
                      +++++||++|+|+++|+.+||+|.+....+      ..+.+++++.++|+++|+|.|.+|.+ +|+++++|++|+++||+
T Consensus       259 ~~~~~i~i~i~~~~~~~~~GT~I~~~~~~~------~~~~i~~It~~~~v~~Isv~g~~~~~-~g~la~if~~L~~~~I~  331 (441)
T TIGR00657       259 AMRAKIPIVVKSTFNPEAPGTLIVASTKEM------EEPIVKGLSLDRNQARVTVSGLGMKG-PGFLARVFGALAEAGIN  331 (441)
T ss_pred             HHHcCCeEEEecCCCCCCCceEEEeCCCcc------ccCccceEEEeCCEEEEEEECCCCCC-ccHHHHHHHHHHHcCCe
Confidence            999999999999999999999998754311      23579999999999999999999998 99999999999999999


Q ss_pred             EEEEeC
Q 023778          272 VIMISQ  277 (277)
Q Consensus       272 V~~isq  277 (277)
                      |++++|
T Consensus       332 I~~i~q  337 (441)
T TIGR00657       332 VDLITQ  337 (441)
T ss_pred             EEEEEe
Confidence            999986

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=100.00  E-value=3e-49  Score=376.10  Aligned_cols=236  Identities=38%  Similarity=0.584  Sum_probs=217.9

Q ss_pred             CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcc
Q 023778           31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (277)
Q Consensus        31 ~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i  110 (277)
                      .++..+|.++++||++|+++++++|+++|+++.++++.+..+++.+++++.++....+.+.++++++  .+.|||++||+
T Consensus        61 ~~~~~~~~i~~~Ge~~s~~~~~~~l~~~g~~a~~l~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~l~--~~~vpVi~g~~  138 (401)
T TIGR00656        61 ITPRERDELVSHGERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGNAKIDIIATEERLLPLLE--EGIIVVVAGFQ  138 (401)
T ss_pred             CChHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEeccccceEEeCCCCCceEeeecchHHHHHHHHh--CCCEEEecCcc
Confidence            4567789999999999999999999999999999999998777777776555554445588899987  78999999999


Q ss_pred             ccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHH
Q 023778          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII  190 (277)
Q Consensus       111 ~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~  190 (277)
                      |.+.+|+++++||||||++|+++|.+|+|+++++||||||||++||+.+|+|+++++++|+|+.+|+++|++++||+|+.
T Consensus       139 ~~~~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~  218 (401)
T TIGR00656       139 GATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVE  218 (401)
T ss_pred             eeCCCCCEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCcEECCccCHHHHHHHHHcCCcccCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCC
Q 023778          191 PVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGA  270 (277)
Q Consensus       191 ~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I  270 (277)
                      +|++++||++|+|+++|+ +||+|.+...        ..+.+++|++++|+++|+|+|.+|.+.+|+++++|++|++++|
T Consensus       219 ~a~~~~i~i~i~~~~~~~-~gT~I~~~~~--------~~~~v~~I~~~~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I  289 (401)
T TIGR00656       219 PAMRSGVPIEVRSSFDPE-EGTLITNSME--------NPPLVKGIALRKNVTRVTVHGLGMLGKRGFLARIFGALAERNI  289 (401)
T ss_pred             HHHHCCCeEEEEECCCCC-CCeEEEeCcc--------cCCceEEEEEECCEEEEEEecCCCCCCccHHHHHHHHHHHcCC
Confidence            999999999999999998 8999987532        2247999999999999999999999999999999999999999


Q ss_pred             cEEEEeC
Q 023778          271 NVIMISQ  277 (277)
Q Consensus       271 ~V~~isq  277 (277)
                      +++|++|
T Consensus       290 ~i~~i~~  296 (401)
T TIGR00656       290 NVDLISQ  296 (401)
T ss_pred             cEEEEEc
Confidence            9999987

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species

Probab=100.00  E-value=4.3e-48  Score=352.36  Aligned_cols=195  Identities=28%  Similarity=0.468  Sum_probs=177.1

Q ss_pred             HHHHHHHHhhhcCCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHh
Q 023778           17 RSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWF   96 (277)
Q Consensus        17 ~~~~~~L~~~~~~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l   96 (277)
                      ...++.|.+++. ..+++.+|.++|+||+||+++++.+|++.|+++.+++++++.++++++++++.+.. .+.+.+.+++
T Consensus        94 ~~~~~~l~~~~~-~~~~~~~d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~-~~~~~~~~~~  171 (288)
T cd04245          94 AEILENLANLDY-ANPDYLLDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILP-ESYQKIKKLR  171 (288)
T ss_pred             HHHHHHHHHhhc-cCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecCCccccccch-hhHHHHHHHH
Confidence            333444444433 35688999999999999999999999999999999999999777778887766654 3667888888


Q ss_pred             hcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHH
Q 023778           97 SQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM  176 (277)
Q Consensus        97 ~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l  176 (277)
                      +  .+.|||++||+|.+.+|++++||||||||+|+++|.+|+|+++++|||||||||+|||++|+|+.+++|||+||.+|
T Consensus       172 ~--~~~v~Vv~Gf~g~~~~G~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~el  249 (288)
T cd04245         172 D--SDEKLVIPGFYGYSKNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMREL  249 (288)
T ss_pred             h--CCCEEEEeCccccCCCCCEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHHH
Confidence            7  67899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEe
Q 023778          177 SYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (277)
Q Consensus       177 ~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~  215 (277)
                      +++|+++|||+|+.+|++++||++|+|+++|+.+||+|.
T Consensus       250 a~~GakVlhp~ai~~a~~~~Ipi~v~n~~~p~~~GT~I~  288 (288)
T cd04245         250 SYAGFSVFHDEALIPAIEAGIPINIKNTNHPEAPGTLIV  288 (288)
T ss_pred             HHCCCcccCHHHHHHHHHCCCcEEEeeCCCCCCCCceeC
Confidence            999999999999999999999999999999999999984

Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.

>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-48  Score=357.53  Aligned_cols=257  Identities=27%  Similarity=0.441  Sum_probs=226.3

Q ss_pred             cHHHHHHHHHHHHhhhcC-----CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCch
Q 023778           12 SYEFIRSTYNFLSNVDSG-----HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFS   86 (277)
Q Consensus        12 ~~~~i~~~~~~L~~~~~~-----~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~   86 (277)
                      +...+.++++.|+++++|     |.+.+.+|+++|+||.||+++++++|++.|++|..+|..++..++.+.+.+.+.. +
T Consensus       163 d~~v~~~~le~leq~Lk~i~mm~Elt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D~~~I~~~~~d~~t~~d~~-~  241 (559)
T KOG0456|consen  163 DPAVIAKLLEGLEQLLKGIAMMKELTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQYDAFEIGFITTDDFTNDDIL-E  241 (559)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHhhhhhhHHHHHHHHHHHHhcCccceeechhheeccccccccchhHH-H
Confidence            445567778888998875     8999999999999999999999999999999999999999987765555432221 1


Q ss_pred             HHHHHHHHHhh-c--CCCceEEecCccc-cCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCC
Q 023778           87 ESEKRLEKWFS-Q--SPSNTIIATGFIA-STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA  162 (277)
Q Consensus        87 ~~~~~i~~~l~-~--~~~~VpVv~G~i~-~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a  162 (277)
                      .+...+.+++. .  .++.|||++||.| .-..|-++++||||+|.+|+.+|.+||++++.+|+|||||+|+||+++|.|
T Consensus       242 a~~~av~k~~~~~~aken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~A  321 (559)
T KOG0456|consen  242 ATYPAVSKLLSGDWAKENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGA  321 (559)
T ss_pred             HHHHHHHHhcccccccCCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCc
Confidence            22222223332 1  3578999999999 557889999999999999999999999999999999999999999999999


Q ss_pred             eEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCee
Q 023778          163 VILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLA  242 (277)
Q Consensus       163 ~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia  242 (277)
                      ++++.++++||.||+|+|+.++||-++.++++.+||++|.|..+|..+||+|.++..       +.+....+|+.++|+.
T Consensus       322 r~vp~lT~dEAaELaYfGaqVlHP~sM~~~~~~~IPvRvKN~~NP~~~GTvI~~d~~-------m~k~~~TsI~lK~nv~  394 (559)
T KOG0456|consen  322 RLVPYLTFDEAAELAYFGAQVLHPFSMRPAREGRIPVRVKNSYNPTAPGTVITPDRD-------MSKAGLTSIVLKRNVT  394 (559)
T ss_pred             cccCccCHHHHHHHHhhhhhhccccccchhhccCcceEeecCCCCCCCceEeccchh-------hhhccceEEEEeccEE
Confidence            999999999999999999999999999999999999999999999999999998753       2456789999999999


Q ss_pred             EEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEe
Q 023778          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS  276 (277)
Q Consensus       243 ~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~is  276 (277)
                      +|.|.+.+|.+..||++++|..|.+.||.|+.|+
T Consensus       395 mldI~Str~l~q~GFLAkvFti~ek~~isVDvva  428 (559)
T KOG0456|consen  395 MLDIASTRMLGQHGFLAKVFTIFEKLGISVDVVA  428 (559)
T ss_pred             EEEecccchhhhhhHHHHHHHHHHHhCcEEEEEE
Confidence            9999999999999999999999999999999886

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=100.00  E-value=1.1e-47  Score=395.28  Aligned_cols=254  Identities=33%  Similarity=0.488  Sum_probs=221.3

Q ss_pred             HHHHHHHHHHhhhc-----CCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCC-------CcC
Q 023778           15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-------QVD   82 (277)
Q Consensus        15 ~i~~~~~~L~~~~~-----~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g-------~~~   82 (277)
                      .+...++.|+++++     ++++++.+|.++|+||+||+.+++.+|+++|+++.++|++++++++++.++       +..
T Consensus        93 ~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~~~~~~~~~  172 (861)
T PRK08961         93 VLAERLAALQRLLDGIRALTRASLRWQAEVLGQGELLSTTLGAAYLEASGLDMGWLDAREWLTALPQPNQSEWSQYLSVS  172 (861)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCChhhhheEEEehHHHHHHHHHHHHHhCCCCcEEEcHHHhEeecCccccccccccccce
Confidence            45667777877775     467889999999999999999999999999999999999999665542111       112


Q ss_pred             CCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCC
Q 023778           83 PDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA  162 (277)
Q Consensus        83 ~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a  162 (277)
                      ++.......++.++. ..+.|||++||+|.+.+|+++||||||||++|+++|.+|+|+++++|||||||||+||+.+|+|
T Consensus       173 ~~~~~~~~~~~~~~~-~~~~v~Vv~Gf~g~~~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a  251 (861)
T PRK08961        173 CQWQSDPALRERFAA-QPAQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDA  251 (861)
T ss_pred             ecHhhHHHHHHHHhc-cCCeEEEeCCcceeCCCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCc
Confidence            222112233444443 2336999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCee
Q 023778          163 VILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLA  242 (277)
Q Consensus       163 ~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia  242 (277)
                      +++++++|+|+.+|++.|++++||+|+++|+++|||++|+|+++|+.+||+|.++..        ..+.+++|+.++|++
T Consensus       252 ~~i~~ls~~e~~el~~~g~~v~~~~a~~~a~~~~i~i~v~~~~~~~~~gT~I~~~~~--------~~~~v~~It~~~~v~  323 (861)
T PRK08961        252 RLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDTERPDLSGTSIDGDAE--------PVPGVKAISRKNGIV  323 (861)
T ss_pred             eEecccCHHHHHHHHHCCCeEECHHHHHHHHHCCCCEEEEeCCCCCCCccEEeCCCC--------CCCcceeEEEECCEE
Confidence            999999999999999999999999999999999999999999999999999986531        235799999999999


Q ss_pred             EEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       243 ~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +|+|.+.+|.+.+|+++++|+.|++++|+|+||+|
T Consensus       324 lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I~s  358 (861)
T PRK08961        324 LVSMETIGMWQQVGFLADVFTLFKKHGLSVDLISS  358 (861)
T ss_pred             EEEEecCCccccccHHHHHHHHHHHcCCeEEEEEc
Confidence            99999999999999999999999999999999985

>PRK08841 aspartate kinase; Validated

Probab=100.00  E-value=2.1e-47  Score=361.89  Aligned_cols=227  Identities=26%  Similarity=0.368  Sum_probs=204.6

Q ss_pred             CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcc
Q 023778           31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (277)
Q Consensus        31 ~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i  110 (277)
                      .+++.+|.++|+||++|+.+++.+|++.|+++.+++++++.+++++.++..++.. ...+.+.++++  .+.|||++||+
T Consensus        61 ~~~~~~d~l~s~GE~~s~~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~i~~-~~~~~i~~ll~--~~~vpVv~Gf~  137 (392)
T PRK08841         61 PTARELDVLLSAGEQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATIKH-IDTSTITELLE--QDQIVIVAGFQ  137 (392)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEehhHcCEEecCCCCCceech-hhHHHHHHHHh--CCCEEEEeCCc
Confidence            3566789999999999999999999999999999999998777776665444432 23578888887  78899999999


Q ss_pred             ccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHH
Q 023778          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII  190 (277)
Q Consensus       111 ~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~  190 (277)
                      |.+++|+++|+||||||++|+++|.+|+|+++++||||||||++||+++|+|+++++|+|+||.+|+++|++++||+|++
T Consensus       138 g~~~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~~Ga~vlhp~ai~  217 (392)
T PRK08841        138 GRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQ  217 (392)
T ss_pred             ccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHHHHHhcCccccCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCC
Q 023778          191 PVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGA  270 (277)
Q Consensus       191 ~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I  270 (277)
                      +|+++|||++|+|++++ .+||+|....         ..+.+++|+.++|+++|++.+.       .++++|+.|++++|
T Consensus       218 ~a~~~~Ipi~i~n~~~~-~~GT~I~~~~---------~~~~i~~i~~~~~~~~i~v~~~-------~~~~i~~~l~~~~i  280 (392)
T PRK08841        218 HAWKHSVPLRVLSSFEV-GEGTLIKGEA---------GTQAVCGIALQRDLALIEVESE-------SLPSLTKQCQMLGI  280 (392)
T ss_pred             HHHHCCCeEEEEecCCC-CCCeEEEecc---------CCCcEEEEEEeCCeEEEEeccc-------hHHHHHHHHHHcCC
Confidence            99999999999999986 5799996532         2357999999999999999763       46899999999999


Q ss_pred             cEEEEeC
Q 023778          271 NVIMISQ  277 (277)
Q Consensus       271 ~V~~isq  277 (277)
                      ++++++|
T Consensus       281 ~v~~i~~  287 (392)
T PRK08841        281 EVWNVIE  287 (392)
T ss_pred             CEEEEEe
Confidence            9999875

>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=100.00  E-value=2.5e-47  Score=347.94  Aligned_cols=200  Identities=31%  Similarity=0.574  Sum_probs=184.1

Q ss_pred             HHHHHHHHHHhhhcC-----CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHH
Q 023778           15 FIRSTYNFLSNVDSG-----HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE   89 (277)
Q Consensus        15 ~i~~~~~~L~~~~~~-----~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~   89 (277)
                      .+...+++|++++++     +++++.+|.++|+||+||+++++.+|+++|+++.+++++++ +.+++++++++++.+.+.
T Consensus        87 ~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~~~~~a~~~~~~~~  165 (292)
T cd04258          87 KLEELLEELTQLAEGAALLGELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTV-LRTDSRFGRAAPDLNALA  165 (292)
T ss_pred             HHHHHHHHHHHHHhhhccccccChHhHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHe-EEecCCCccccccHHHHH
Confidence            466778888888864     67889999999999999999999999999999999999999 456677888888887777


Q ss_pred             HHHHHHhhc-CCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeee
Q 023778           90 KRLEKWFSQ-SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL  168 (277)
Q Consensus        90 ~~i~~~l~~-~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~i  168 (277)
                      +.+.+.+.. ..+.|||++||+|.+.+|+++||||||||++|+++|.+|+|+++++||||||||++||+++|+|++++++
T Consensus       166 ~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~i  245 (292)
T cd04258         166 ELAAKLLKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEI  245 (292)
T ss_pred             HHHHHHHHHhhcCCEEEECCccccCCCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEecee
Confidence            777776643 2568999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEe
Q 023778          169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (277)
Q Consensus       169 s~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~  215 (277)
                      +|+||.+|+++|++++||+|+.++++++||++|+|+++|+.+||+|+
T Consensus       246 sy~Ea~ela~~Gakvlhp~a~~~~~~~~ipi~i~~~~~p~~~GT~I~  292 (292)
T cd04258         246 SFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDPEAGGTLIT  292 (292)
T ss_pred             CHHHHHHHHHCCCcccCHHHHHHHHHcCCcEEEEeCCCCCCCCceeC
Confidence            99999999999999999999999999999999999999999999984

AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.

>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH)

Probab=100.00  E-value=2.9e-47  Score=348.32  Aligned_cols=200  Identities=49%  Similarity=0.798  Sum_probs=184.1

Q ss_pred             HHHHHHHHHHHhhhc-----CCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHH
Q 023778           14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES   88 (277)
Q Consensus        14 ~~i~~~~~~L~~~~~-----~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~   88 (277)
                      +.|...++.|+++++     ++++++.+|.++|+||+||+++++.+|+++|+++.+++++++ +.+++.++.+.++.+.+
T Consensus        90 ~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~~~~~a~~~~~~~  168 (294)
T cd04257          90 SALGNDLEELKDLLEGIYLLGELPDSIRAKVLSFGERLSARLLSALLNQQGLDAAWIDAREL-IVTDGGYLNAVVDIELS  168 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCChhHhhhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHe-eEecCCCCceEechHhh
Confidence            446667777877776     467899999999999999999999999999999999999997 45666777777887777


Q ss_pred             HHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeee
Q 023778           89 EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL  168 (277)
Q Consensus        89 ~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~i  168 (277)
                      .+.+++++... +.|||++||+|.+.+|+++|+||||||++|+++|.+|+|+++++||||||||++||+.+|+|++++++
T Consensus       169 ~~~l~~~~~~~-~~v~Vv~Gfig~~~~G~~ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~i  247 (294)
T cd04257         169 KERIKAWFSSN-GKVIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSL  247 (294)
T ss_pred             HHHHHHHHhcC-CCEEEecCcccCCCCCCEEECCCCchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEecee
Confidence            88999888732 78999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEe
Q 023778          169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (277)
Q Consensus       169 s~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~  215 (277)
                      +|+|+.+++++|++++||+|+.+++++|||++|+|+++|+.+||+|+
T Consensus       248 s~~ea~~l~~~Gakv~h~~~~~~a~~~~Ipi~i~~~~~p~~~GT~I~  294 (294)
T cd04257         248 SYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNPEAPGTLIS  294 (294)
T ss_pred             CHHHHHHHHhCCCcccCHHHHHHHHHCCCCEEEeeCCCCCCCCCEeC
Confidence            99999999999999999999999999999999999999999999984

These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act

>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH)

Probab=100.00  E-value=4.8e-47  Score=346.75  Aligned_cols=200  Identities=43%  Similarity=0.736  Sum_probs=184.0

Q ss_pred             HHHHHHHHHHHhhhcC-----CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHH
Q 023778           14 EFIRSTYNFLSNVDSG-----HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES   88 (277)
Q Consensus        14 ~~i~~~~~~L~~~~~~-----~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~   88 (277)
                      +.+...++.|++++++     +++++.+|.++|+||+||+++++.+|+++|+++.++++++++ .+++.++.+.+++..+
T Consensus        89 ~~i~~~~~~l~~~l~~~~~~~~~s~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i-~t~~~~~~~~~~~~~s  167 (293)
T cd04243          89 AALDSLLERLKDLLEGIRLLGELSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDARELL-LTDDGFLNAVVDLKLS  167 (293)
T ss_pred             HHHHHHHHHHHHHHHhhhhhccCCchhhhHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHeE-EecCCCCcchhhhHHH
Confidence            4566778888888764     578999999999999999999999999999999999999884 4556677777777777


Q ss_pred             HHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeee
Q 023778           89 EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL  168 (277)
Q Consensus        89 ~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~i  168 (277)
                      .+.++.++.. .+.|||++||+|.+.+|+++|+||||||++|+++|.+++|+++++||||||||++||+.+|+|++++++
T Consensus       168 ~~~~~~~~~~-~~~v~Vv~Gfig~~~~G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~l  246 (293)
T cd04243         168 KERLAQLLAE-HGKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKEL  246 (293)
T ss_pred             HHHHHHHHhc-CCCEEEecCccccCCCCCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEecee
Confidence            7889988872 178999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEe
Q 023778          169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (277)
Q Consensus       169 s~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~  215 (277)
                      +|+|+.+|+++|++++||+|+.++++++||++|+|+++|+.+||+|+
T Consensus       247 s~~ea~~l~~~Gakvl~p~ai~~a~~~~i~i~i~~~~~p~~~GT~I~  293 (293)
T cd04243         247 SYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNPEAPGTLIS  293 (293)
T ss_pred             CHHHHHHHHhCCCcccCHHHHHHHHHCCCcEEEecCCCCCCCCCEeC
Confidence            99999999999999999999999999999999999999999999984

These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-

>PRK08210 aspartate kinase I; Reviewed

Probab=100.00  E-value=2.7e-46  Score=356.23  Aligned_cols=240  Identities=28%  Similarity=0.454  Sum_probs=210.5

Q ss_pred             CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcc
Q 023778           31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (277)
Q Consensus        31 ~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i  110 (277)
                      .+++..+.++++||.+|+++++++|+++|+++.++++.+..+++.+.++..++.. ...+.++++++  .+.|||++||+
T Consensus        66 ~~~~~~~~l~~~Ge~~s~~~~~~~l~~~Gi~a~~l~~~~~~~~t~~~~~~~~v~~-~~~~~l~~~l~--~~~vpVi~G~~  142 (403)
T PRK08210         66 ISKREQDLLMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIE-VNPDRILEALE--EGDVVVVAGFQ  142 (403)
T ss_pred             CChHHHHHHHhHhHHHHHHHHHHHHHhCCCCeEEechHHccEEccCCCCceeeeh-hhHHHHHHHHh--cCCEEEeeCee
Confidence            4567789899999999999999999999999999999988677766665433322 23478888887  78999999999


Q ss_pred             ccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHH
Q 023778          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII  190 (277)
Q Consensus       111 ~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~  190 (277)
                      +.+++|+++|+||||||++|+++|.+|+|++++|||||||||++||+.+|+++++++|+|+|+.+|+++|++++||+|++
T Consensus       143 ~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~  222 (403)
T PRK08210        143 GVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVE  222 (403)
T ss_pred             ecCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCC
Q 023778          191 PVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGA  270 (277)
Q Consensus       191 ~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I  270 (277)
                      +|++++||++|+|++++ .+||+|.+...... ..+...+.+++|+..+|+++|+|.+.++  .+|+++++|+.|+++||
T Consensus       223 ~~~~~~i~i~i~~~~~~-~~gT~I~~~~~~~~-~~~~~~~~v~~It~~~~i~~isv~~~~~--~~g~la~If~~L~~~~I  298 (403)
T PRK08210        223 IAMQANIPLRIRSTYSD-SPGTLITSLGDAKG-GIDVEERLITGIAHVSNVTQIKVKAKEN--AYDLQQEVFKALAEAGI  298 (403)
T ss_pred             HHHHCCCeEEEEecCCC-cCCcEEEecCcccc-ccccccCceEEEEEcCCcEEEEEecCCC--cchHHHHHHHHHHHcCC
Confidence            99999999999999985 46999987532100 0001235799999999999999987665  39999999999999999


Q ss_pred             cEEEEeC
Q 023778          271 NVIMISQ  277 (277)
Q Consensus       271 ~V~~isq  277 (277)
                      +|++++|
T Consensus       299 ~i~~i~~  305 (403)
T PRK08210        299 SVDFINI  305 (403)
T ss_pred             eEEEEEe
Confidence            9999987

>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains

Probab=100.00  E-value=7.8e-47  Score=346.32  Aligned_cols=202  Identities=30%  Similarity=0.515  Sum_probs=172.8

Q ss_pred             HHHHHHHHHHHhhhc-----CCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCC-chH
Q 023778           14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPD-FSE   87 (277)
Q Consensus        14 ~~i~~~~~~L~~~~~-----~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~-~~~   87 (277)
                      +.++..++.|++++.     ++++++.+|.++|+||+||+++++.+|++.|+++.++++++++. ++......... ...
T Consensus        98 ~~i~~~~~~l~~~l~~~~~l~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~i~-~~~~~~~~~~~~~~~  176 (306)
T cd04247          98 EEINKECELLRKYLEAAKILSEISPRTKDLVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHIVD-LDFSIEALDQTFYDE  176 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhcchHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEcHHHhee-cCCCccccccchhHH
Confidence            345667777777775     46789999999999999999999999999999999999999853 43221011111 122


Q ss_pred             HHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEee
Q 023778           88 SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRT  167 (277)
Q Consensus        88 ~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~  167 (277)
                      ..+.+.+.+....+.|||++||+|.+.+|+++||||||||++|+++|..|+|+++++|||||||||+||+.+|+|++|++
T Consensus       177 ~~~~~~~~~~~~~~~v~Vv~GFig~~~~G~~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~  256 (306)
T cd04247         177 LAQVLGEKITACENRVPVVTGFFGNVPGGLLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPS  256 (306)
T ss_pred             HHHHHHHHhhccCCceEEeeccEecCCCCCeEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecc
Confidence            33334344432346799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeC
Q 023778          168 LSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICR  216 (277)
Q Consensus       168 is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~  216 (277)
                      |+|+||.+|+++|++++||+|+.||++++||++|+|+++|+.+||+|.+
T Consensus       257 is~~ea~el~~~GakVlHp~ti~pa~~~~Ipi~i~nt~~P~~~GT~I~~  305 (306)
T cd04247         257 ITPEEAAELTYYGSEVIHPFTMEQVIKARIPIRIKNVENPRGEGTVIYP  305 (306)
T ss_pred             cCHHHHHHHHhCcCcccCHHHHHHHHHcCCcEEEecCCCCCCCCcEEcC
Confidence            9999999999999999999999999999999999999999999999976

Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.

>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants

Probab=100.00  E-value=1.8e-46  Score=343.97  Aligned_cols=200  Identities=41%  Similarity=0.636  Sum_probs=179.5

Q ss_pred             HHHHHHHHHHHhhhcC-----CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCC---c
Q 023778           14 EFIRSTYNFLSNVDSG-----HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPD---F   85 (277)
Q Consensus        14 ~~i~~~~~~L~~~~~~-----~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~---~   85 (277)
                      +.|+..+++|++++++     +++++.+|.++|+||+||+++++.+|+++|++|.+++++++.+++++.+++..++   .
T Consensus        91 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~a~~~~~~~  170 (298)
T cd04244          91 SIIDSLLEELEKLLYGIAYLGELTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATY  170 (298)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCchHhhHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHcceeecCcccccccchhHH
Confidence            5577788888888764     6788899999999999999999999999999999999999977777766654332   2


Q ss_pred             hHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEE
Q 023778           86 SESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (277)
Q Consensus        86 ~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i  165 (277)
                      ......+..+++  .+.|||++||+|.+.+|+++|+||||||++|+++|.+|+|+++++||||||||++||+.+|+++++
T Consensus       171 ~~i~~~l~~ll~--~~~vpVv~Gfig~~~~g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~dP~~~~~a~~i  248 (298)
T cd04244         171 ERVRKRLLPMLE--DGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTI  248 (298)
T ss_pred             HHHHHHHHHHhh--cCCEEEEeCccccCCCCCEEEecCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEc
Confidence            223334445555  679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEe
Q 023778          166 RTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (277)
Q Consensus       166 ~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~  215 (277)
                      ++++|+||.+|+++|++++||+|+.+|++++||++|+|+++|+.+||+|+
T Consensus       249 ~~lsy~Ea~el~~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~p~~~GT~I~  298 (298)
T cd04244         249 PRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNPEAPGTLIT  298 (298)
T ss_pred             CccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEeeCCCCCCCCCEeC
Confidence            99999999999999999999999999999999999999999999999984

The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.

>PRK06635 aspartate kinase; Reviewed

Probab=100.00  E-value=2e-45  Score=350.13  Aligned_cols=235  Identities=31%  Similarity=0.495  Sum_probs=212.1

Q ss_pred             ChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccc
Q 023778           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (277)
Q Consensus        32 ~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~  111 (277)
                      ++..++.++++||.+|+++++++|+++|+++.++++.++.++++.+|+..++. ....+.++++++  .+.|||++||+|
T Consensus        62 ~~~~~~~~~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~--~~~ipVi~g~~~  138 (404)
T PRK06635         62 DPRELDMLLSTGEQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHGKARIT-DIDPSRIREALD--EGDVVVVAGFQG  138 (404)
T ss_pred             CHHHHHHHhhhhHHHHHHHHHHHHHhCCCCeEEeChhhCCEEecCCCCceEee-ecCHHHHHHHHh--CCCEEEecCccE
Confidence            56778999999999999999999999999999999999977776666543332 123578888887  789999999999


Q ss_pred             cCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHH
Q 023778          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIP  191 (277)
Q Consensus       112 ~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~  191 (277)
                      .+++|+++++||||||++|+++|.+|+|+++++||||||||++||+.+|+++++++++|+|+.+|++.|++++||+|+.+
T Consensus       139 ~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~~~~a~~~  218 (404)
T PRK06635        139 VDEDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEY  218 (404)
T ss_pred             eCCCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHHHcCCcccCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCc
Q 023778          192 VMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGAN  271 (277)
Q Consensus       192 a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~  271 (277)
                      ++++++|++|.|++++ .+||+|......     ....+.+++++..+++++|+++|  |.+.||+++++|++|+++||+
T Consensus       219 ~~~~~i~~~i~~~~~~-~~gT~i~~~~~~-----~~~~~~i~~I~~~~~v~~Isv~g--~~~~~g~l~~i~~~L~~~~I~  290 (404)
T PRK06635        219 AKKYNVPLRVRSSFSD-NPGTLITGEEEE-----IMEQPVVTGIAFDKDEAKVTVVG--VPDKPGIAAQIFGALAEANIN  290 (404)
T ss_pred             HHHcCceEEEEcCCCC-CCCCEEeeCCcc-----ccccCceEEEEecCCeEEEEECC--CCCCccHHHHHHHHHHHcCCe
Confidence            9999999999999987 689999875420     01235799999999999999998  889999999999999999999


Q ss_pred             EEEEeC
Q 023778          272 VIMISQ  277 (277)
Q Consensus       272 V~~isq  277 (277)
                      |++++|
T Consensus       291 i~~is~  296 (404)
T PRK06635        291 VDMIVQ  296 (404)
T ss_pred             EEEEEe
Confidence            999987

>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria

Probab=100.00  E-value=5.5e-46  Score=339.92  Aligned_cols=199  Identities=34%  Similarity=0.543  Sum_probs=178.5

Q ss_pred             HHHHHHHHHHhhhcC-----CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCC-------cC
Q 023778           15 FIRSTYNFLSNVDSG-----HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ-------VD   82 (277)
Q Consensus        15 ~i~~~~~~L~~~~~~-----~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~-------~~   82 (277)
                      .+...++.|++++++     +++++.+|.++|+||+||+++++.+|++.|+++.+++++++++++ +.++.       +.
T Consensus        85 ~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~~~-~~~~~~~~~~~~a~  163 (295)
T cd04259          85 LLANDLAQLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTAT-PTLGGETMNYLSAR  163 (295)
T ss_pred             HHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHheeec-ccccccccccccce
Confidence            466677778777754     688999999999999999999999999999999999999996544 44543       33


Q ss_pred             CCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCC
Q 023778           83 PDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA  162 (277)
Q Consensus        83 ~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a  162 (277)
                      ++.+.+.+++.+.+.. .+.|||++||+|.+.+|+++||||||||++|+++|.+++|+++++||||||||++||+.+|+|
T Consensus       164 v~~~~~~~~l~~~l~~-~~~v~Vv~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt~DP~~~~~a  242 (295)
T cd04259         164 CESEYADALLQKRLAD-GAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHA  242 (295)
T ss_pred             ehhhhhHHHHHHHHhc-CCceeEeCCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCC
Confidence            3334566788888762 257999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEe
Q 023778          163 VILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (277)
Q Consensus       163 ~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~  215 (277)
                      +++++++|+|+.+|+++|++++||+|+++|++++||++|+|+++|+.+||+|+
T Consensus       243 ~~i~~ls~~ea~~l~~~Ga~v~h~~a~~~a~~~~ipi~i~~~~~p~~~GT~I~  295 (295)
T cd04259         243 RLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERPELSGTLIT  295 (295)
T ss_pred             eEeceeCHHHHHHHHHcCCcccCHHHHHHHHHCCCCEEEEeCCCCCCCCcEeC
Confidence            99999999999999999999999999999999999999999999999999984

Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.

>PRK08373 aspartate kinase; Validated

Probab=100.00  E-value=1.8e-44  Score=334.91  Aligned_cols=204  Identities=30%  Similarity=0.432  Sum_probs=182.8

Q ss_pred             CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHH---HHHHHHhhcCCCceEEec
Q 023778           31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE---KRLEKWFSQSPSNTIIAT  107 (277)
Q Consensus        31 ~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~---~~i~~~l~~~~~~VpVv~  107 (277)
                      ++++.+|+++|+||++|+.+++.+|+++|+++.+++++++ +.+++.++++.++++.+.   +.+.++++  .+.|||++
T Consensus        97 ~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~-i~t~~~~~~a~i~~~~s~~~~~~l~~~l~--~g~VpVv~  173 (341)
T PRK08373         97 PSEALRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEI-LEAKGSFGNAFIDIKKSKRNVKILYELLE--RGRVPVVP  173 (341)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHh-eeecCCccceeechhhhhhhHHHHHHHHh--CCcEEEEe
Confidence            4578899999999999999999999999999999999998 456677777766654433   55666666  78999999


Q ss_pred             CccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHH
Q 023778          108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR  187 (277)
Q Consensus       108 G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~  187 (277)
                      ||++ +.+|.++|+||||||++|+++|.+|+|++++|||||||||++||+.+|+|++++++||+||.+|+++|++++||+
T Consensus       174 Gf~g-~~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~isy~Ea~ela~~Gakvlhp~  252 (341)
T PRK08373        174 GFIG-NLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAAKLGMKALHWK  252 (341)
T ss_pred             CCcc-CCCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEcccCCHHHHHHHHHCcChhhhHH
Confidence            9998 889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecC
Q 023778          188 TIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGT  249 (277)
Q Consensus       188 a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~  249 (277)
                      |++++++ +||++|+|+++| .+||+|.+...        ..+.+..+ ..+|.|.|+++|.
T Consensus       253 ai~~a~~-~Ipi~v~~t~~~-~~GT~I~~~~~--------~~~~~~~~-~~~~~~~i~~~~~  303 (341)
T PRK08373        253 AIEPVKG-KIPIIFGRTRDW-RMGTLVSNESS--------GMPILVHK-VGEEHAEILVVGV  303 (341)
T ss_pred             HHHHHHc-CCcEEEecCCCC-CCCcEEecCCC--------CCceEEEE-ecCCEEEEEEecc
Confidence            9999999 999999999998 48999987543        22567777 8999999999984

>PRK07431 aspartate kinase; Provisional

Probab=100.00  E-value=1.1e-43  Score=352.85  Aligned_cols=242  Identities=28%  Similarity=0.433  Sum_probs=209.8

Q ss_pred             CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCc
Q 023778           30 HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGF  109 (277)
Q Consensus        30 ~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~  109 (277)
                      ..+....+.++++||.+|+.+++.+|+++|+++.++++.++.+++++.++..++.. ...+.++++++  .+.|||++||
T Consensus        60 ~~~~~~~~~~ls~Ge~~s~~l~~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~~i~~-~~~~~l~~~l~--~g~vpVv~g~  136 (587)
T PRK07431         60 NPPRREMDMLLSTGEQVSIALLSMALHELGQPAISLTGAQVGIVTESEHGRARILE-IKTDRIQRHLD--AGKVVVVAGF  136 (587)
T ss_pred             CCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEechhHcCeEecCCCCceeeee-ccHHHHHHHHh--CCCeEEecCC
Confidence            44566889999999999999999999999999999999998777766655433321 12368888887  7899999999


Q ss_pred             cccCCC--CCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHH
Q 023778          110 IASTPD--NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR  187 (277)
Q Consensus       110 i~~~~~--G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~  187 (277)
                      +|.+.+  |+++|+||||||++|+++|.+|+|+++++||||||||++||+.+|+|++|++++|+|+.+|+++|+++|||+
T Consensus       137 ~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~~G~~v~~~~  216 (587)
T PRK07431        137 QGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASLGASVLHPR  216 (587)
T ss_pred             cCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHhCCCceEhHH
Confidence            887644  889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCC-CcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHH
Q 023778          188 TIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE-NEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVK  266 (277)
Q Consensus       188 a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~-~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~  266 (277)
                      |+.+++++|||++|+|++. +.+||+|.+..... ...+.....+++++++.+|++++++.  +|.+.+|+++++|+.|+
T Consensus       217 a~~~~~~~~i~i~i~~~~~-~~~GT~i~~~~~~~~~~~~~~~~~~i~gi~~~~~~a~itl~--~~~~~~g~~a~if~~l~  293 (587)
T PRK07431        217 AVEIARNYGVPLVVRSSWS-DAPGTLVTSPPPRPRSLGGLELGKPVDGVELDEDQAKVALL--RVPDRPGIAAQLFEELA  293 (587)
T ss_pred             HHHHHHHcCCcEEEecCCC-CCCCeEEEeCCcccccccchhcccccceEEEecCceEEEEe--cCCCcccHHHHHHHHHH
Confidence            9999999999999999994 56899998654321 00011113468999999999999996  68899999999999999


Q ss_pred             hCCCcEEEEeC
Q 023778          267 DVGANVIMISQ  277 (277)
Q Consensus       267 ~~~I~V~~isq  277 (277)
                      ++||+|+||+|
T Consensus       294 ~~~I~v~~i~q  304 (587)
T PRK07431        294 AQGVNVDLIIQ  304 (587)
T ss_pred             HcCCcEEEEEe
Confidence            99999999987

>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria

Probab=100.00  E-value=8.3e-44  Score=323.38  Aligned_cols=188  Identities=21%  Similarity=0.337  Sum_probs=163.1

Q ss_pred             HHHHHHHHHhhhc------CCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHH
Q 023778           16 IRSTYNFLSNVDS------GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE   89 (277)
Q Consensus        16 i~~~~~~L~~~~~------~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~   89 (277)
                      .+.|+..|.++|.      ++++++.+|.++|+||++|+.+++.+|++.|++|.++|...+.. . ...   . +    .
T Consensus       107 ~~~~l~~~~~~~~~g~~~l~e~~~~~rd~l~S~GE~~Sa~l~a~~L~~~Gi~A~~vD~~~~~~-~-~~~---t-~----~  176 (304)
T cd04248         107 ARACLHDLARLCSSGYFSLAEHLLAARELLASLGEAHSAFNTALLLQNRGVNARFVDLSGWRD-S-GDM---T-L----D  176 (304)
T ss_pred             HHHHHHHHHHHHHhhHHHHhhCCHHHHHHHhhhCHHHHHHHHHHHHHHCCCCeEEECcccccc-c-CCC---C-c----H
Confidence            4566677777774      37899999999999999999999999999999999999876632 1 111   1 1    2


Q ss_pred             HHHHHHhhc--CCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCC--CCCeEE
Q 023778           90 KRLEKWFSQ--SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKV--SEAVIL  165 (277)
Q Consensus        90 ~~i~~~l~~--~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~--~~a~~i  165 (277)
                      +++.+.+..  ..+.|||++|| +.+.+|+++|||||||||+|+++|.+|+|++++|||||+ |||+|||.+  ++|++|
T Consensus       177 ~~i~~~~~~~~~~~~v~IvtGF-~~~~~G~itTLGRGGSDyTAs~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i  254 (304)
T cd04248         177 ERISEAFRDIDPRDELPIVTGY-AKCAEGLMREFDRGYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPI  254 (304)
T ss_pred             HHHHHHHHhhccCCcEEEeCCc-cCCCCCCEEEcCCCcHHHHHHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEe
Confidence            444444431  24579999999 567899999999999999999999999999999999995 999999999  689999


Q ss_pred             eeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEe
Q 023778          166 RTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (277)
Q Consensus       166 ~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~  215 (277)
                      +++||+||.||+++|++++||+|++++++++||++|+|+|+|+.+||+|+
T Consensus       255 ~~lsY~EA~ELA~~GakvLHP~ai~pa~~~~IPi~Vkntf~P~~~GTlIt  304 (304)
T cd04248         255 GRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRVKNTFEPDHPGTLIT  304 (304)
T ss_pred             CccCHHHHHHHHHcChhhcCHHHHHHHHHcCCeEEEecCCCCCCCCceeC
Confidence            99999999999999999999999999999999999999999999999994

Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.

>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative

Probab=100.00  E-value=1.9e-41  Score=313.08  Aligned_cols=195  Identities=27%  Similarity=0.427  Sum_probs=172.3

Q ss_pred             CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHH---HHHHhhcCCCceEEec
Q 023778           31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKR---LEKWFSQSPSNTIIAT  107 (277)
Q Consensus        31 ~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~---i~~~l~~~~~~VpVv~  107 (277)
                      +++..+|+++|+||+||+++++.     |+++.++++++++ .+++.++++.++++.+...   +.++++  .+.|||++
T Consensus        92 ~~~~~~d~I~s~GE~lSa~Lla~-----gi~a~~vd~~~~i-~t~~~~~~a~~~~~~~~~~~~~l~~~l~--~g~IpVv~  163 (327)
T TIGR02078        92 PKEALRDYILSLGERLSAVIFAE-----GINGKVVDPWDIF-FAKGDFGNAFIDIKKSKRNAKILYEVLE--SGKIPVIP  163 (327)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHc-----cCCcEEEcHHHHh-ccCCcCCceeechhhhHhhHHHHHHHHh--CCcEEEEe
Confidence            35678999999999999999987     8999999999984 5667788777776555444   444554  78999999


Q ss_pred             CccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHH
Q 023778          108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR  187 (277)
Q Consensus       108 G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~  187 (277)
                      ||++ +.+|.++|+||||||++|+++|.+|+|+++++||||||||++||+.+|+|+++++++|+||.+++++|++++||+
T Consensus       164 Gf~~-~~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy~Ea~ela~~Gakvlhp~  242 (327)
T TIGR02078       164 GFYG-NLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWK  242 (327)
T ss_pred             CCcc-CCCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEccccCHHHHHHHHHCCchhhHHH
Confidence            9998 889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecC-eeEEEE
Q 023778          188 TIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDN-LALVNV  246 (277)
Q Consensus       188 a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~n-ia~Isv  246 (277)
                      |+++++++|||++|+|+++|+ +||+|+....           ....++++++ ++.|++
T Consensus       243 a~~~a~~~~Ipi~I~~t~~~~-~GT~I~~~~~-----------~~~~i~~~~~~i~~v~~  290 (327)
T TIGR02078       243 AADLAKEYKIPVLFGRTRDWR-MGTLISNRSS-----------GMPLMVYKDGELLVVNV  290 (327)
T ss_pred             HHHHHHHCCCeEEEEeCCCcC-CCcEEecCCC-----------CCcEEEEccCcEEEEEE
Confidence            999999999999999999997 7999987542           1333788888 888887

This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.

>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences

Probab=100.00  E-value=1.8e-38  Score=282.82  Aligned_cols=181  Identities=33%  Similarity=0.479  Sum_probs=165.5

Q ss_pred             CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcc
Q 023778           31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (277)
Q Consensus        31 ~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i  110 (277)
                      .+.+..+.++++||++++.++++.|+++|++++++++.++.+++.++++..++.. ...+.++++++  .+.|||++||+
T Consensus        59 ~~~~~~~~i~a~Ge~~~~~l~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~i~~-~~~~~l~~ll~--~~~ipVi~G~~  135 (239)
T cd04261          59 PPARELDVLLSTGEQVSIALLAMALNRLGIKAISLTGWQAGILTDGHHGKARIID-IDPDRIRELLE--EGDVVIVAGFQ  135 (239)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEechhhCCEEecCCCCcceech-hhHHHHHHHHH--cCCeEEEcCcc
Confidence            3567788899999999999999999999999999999998766666664433322 23478888888  78999999999


Q ss_pred             ccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHH
Q 023778          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII  190 (277)
Q Consensus       111 ~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~  190 (277)
                      +.+++|.++++|||++|++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|+|+.+|++.|++++||+|++
T Consensus       136 ~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~~G~~~~~~~a~~  215 (239)
T cd04261         136 GINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVE  215 (239)
T ss_pred             ccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCceEccccCHHHHHHHHhccccccCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCcEEEEeccCCCCCeeEEe
Q 023778          191 PVMRYDIPIVIRNIFNLSVPGIMIC  215 (277)
Q Consensus       191 ~a~~~~i~v~I~n~~~~~~~GT~I~  215 (277)
                      ++.++|||++|.|+++|+ +||+|+
T Consensus       216 ~~~~~~i~i~I~n~~~~~-~gt~i~  239 (239)
T cd04261         216 LAKKYGVPLRVLSSFSEE-PGTLIT  239 (239)
T ss_pred             HHHHcCCeEEEecCCCCC-CCcEeC
Confidence            999999999999999999 999984

In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and

>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species

Probab=100.00  E-value=3e-38  Score=282.30  Aligned_cols=182  Identities=34%  Similarity=0.508  Sum_probs=165.5

Q ss_pred             CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCc
Q 023778           30 HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGF  109 (277)
Q Consensus        30 ~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~  109 (277)
                      ..++...+.++++||.+++.+++++|+++|+++..+++.+..+++.+.++..++.. ...+.++++++  .+.|||++||
T Consensus        63 ~~t~~~~~~~~~~Ge~~~~~~~~~~l~~~Gi~a~~l~~~~~~lit~~~~~~~~v~~-~~~~~l~~ll~--~g~VPVv~g~  139 (244)
T cd04260          63 DISPRELDLLMSCGEIISAVVLTSTLRAQGLKAVALTGAQAGILTDDNYSNAKIIK-VNPKKILSALK--EGDVVVVAGF  139 (244)
T ss_pred             CCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechHHcCEEecCCCCceeeec-cCHHHHHHHHh--CCCEEEecCC
Confidence            35667789999999999999999999999999999999998777766665433221 12367888887  7899999999


Q ss_pred             cccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHH
Q 023778          110 IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI  189 (277)
Q Consensus       110 i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~  189 (277)
                      ++.|++|++++++|||+|++|+++|.+|+|+++++||||||||++||+.++++++|++|+|+|+.+|++.|++++||+|+
T Consensus       140 ~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~  219 (244)
T cd04260         140 QGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAV  219 (244)
T ss_pred             cccCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCcEEEEeccCCCCCeeEEe
Q 023778          190 IPVMRYDIPIVIRNIFNLSVPGIMIC  215 (277)
Q Consensus       190 ~~a~~~~i~v~I~n~~~~~~~GT~I~  215 (277)
                      ++++++++|++|.|+++|+ +||+|+
T Consensus       220 ~~~~~~~i~v~I~~~~~~~-~gt~i~  244 (244)
T cd04260         220 EIAMQANIPIRIRSTMSEN-PGTLIT  244 (244)
T ss_pred             HHHHHcCCeEEEecCCCCC-CCCEeC
Confidence            9999999999999999998 999984

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet

>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;)

Probab=100.00  E-value=1.3e-38  Score=281.71  Aligned_cols=200  Identities=39%  Similarity=0.639  Sum_probs=172.6

Q ss_pred             HHHHHHHHHHHHhhhc---------C--CCChhHHH--HHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCC
Q 023778           13 YEFIRSTYNFLSNVDS---------G--HATESFTD--FVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN   79 (277)
Q Consensus        13 ~~~i~~~~~~L~~~~~---------~--~~~~~~~~--~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g   79 (277)
                      .+.++...+.+.++..         |  ..+.....  .++|+||.+|+++++++|+++|+++.++++.++.+++++. +
T Consensus        14 ~~~~~~~~~~i~~l~~g~~vvvV~Sg~~~~t~~l~~~~~~~s~Ge~~~~~l~~~~l~~~Gi~a~~l~~~~~~~~~~~~-~   92 (227)
T cd04234          14 AERIKRVADIIKAYEKGNRVVVVVSAMGGVTDLLIELALLLSFGERLSARLLAAALRDRGIKARSLDARQAGITTDDN-H   92 (227)
T ss_pred             HHHHHHHHHHHHHhhcCCCEEEEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCHHHCCEEcCCc-c
Confidence            3456666666655411         1  23444333  6888999999999999999999999999999997766543 2


Q ss_pred             CcCCCchHHHHHHHHHhhcCC-CceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCC
Q 023778           80 QVDPDFSESEKRLEKWFSQSP-SNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRK  158 (277)
Q Consensus        80 ~~~~~~~~~~~~i~~~l~~~~-~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~  158 (277)
                      ......+...+.++++++  . +.|||++||++.+++|++++++|||+|++|+++|.+|+|+++++||||||||++||+.
T Consensus        93 ~~~~~~~~~~~~l~~~l~--~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~  170 (227)
T cd04234          93 GAARIIEISYERLKELLA--EIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRI  170 (227)
T ss_pred             chhhHHHHHHHHHHHHHh--hCCCEEEecCceecCCCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCC
Confidence            223334556788999888  7 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEe
Q 023778          159 VSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (277)
Q Consensus       159 ~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~  215 (277)
                      +|+++++++++|+|+.+|+..|+++|||+|+++|.+++||++|+|+++|+.+||+|+
T Consensus       171 ~~~a~~i~~i~~~e~~~l~~~G~~~~~~~a~~~a~~~~i~i~i~~~~~~~~~gT~I~  227 (227)
T cd04234         171 VPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPEAPGTLIT  227 (227)
T ss_pred             CCCceEcCcCCHHHHHHHHhCCccccCHHHHHHHHHcCCeEEEEeCCCCCCCCCEeC
Confidence            999999999999999999999999999999999999999999999999999999984

AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd

>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes

Probab=100.00  E-value=7e-38  Score=278.91  Aligned_cols=180  Identities=33%  Similarity=0.522  Sum_probs=164.7

Q ss_pred             ChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccc
Q 023778           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (277)
Q Consensus        32 ~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~  111 (277)
                      +....+.+++.||.+|+.++++.|+++|++++++++.+..+++...+++.++. ..+.+.++++++  .+.|||++||++
T Consensus        60 ~~~~~~~i~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~~~-~~~~~~l~~ll~--~g~ipVi~g~~~  136 (239)
T cd04246          60 SPRELDMLLSTGEQISAALLAMALNRLGIKAISLTGWQAGILTDDHHGNARII-DIDPKRILEALE--EGDVVVVAGFQG  136 (239)
T ss_pred             CHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEeccccCCEEecCCCCceeec-hhhHHHHHHHHh--cCCEEEEcCccc
Confidence            56678899999999999999999999999999999999766665556443333 234578888888  789999999999


Q ss_pred             cCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHH
Q 023778          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIP  191 (277)
Q Consensus       112 ~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~  191 (277)
                      .+++|.+++++|||+|++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|+|+.++++.|++++||+|+++
T Consensus       137 ~~~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~~G~~~~~~~a~~~  216 (239)
T cd04246         137 VNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVEL  216 (239)
T ss_pred             cCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCcEEEEeccCCCCCeeEEe
Q 023778          192 VMRYDIPIVIRNIFNLSVPGIMIC  215 (277)
Q Consensus       192 a~~~~i~v~I~n~~~~~~~GT~I~  215 (277)
                      ++++|||++|+|+++|+ +||+|+
T Consensus       217 a~~~gi~i~i~~~~~~~-~gt~i~  239 (239)
T cd04246         217 AKKYNVPLRVRSSFSEN-PGTLIT  239 (239)
T ss_pred             HHHCCCeEEEecCCCCC-CCcEeC
Confidence            99999999999999999 999984

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati

>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK)

Probab=99.97  E-value=1.8e-30  Score=231.19  Aligned_cols=180  Identities=37%  Similarity=0.499  Sum_probs=156.9

Q ss_pred             CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcc
Q 023778           31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (277)
Q Consensus        31 ~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i  110 (277)
                      .+....+.+++.|+.+++.++++.|+++|+++.++++.++...+. .++..........+.++++++  .+.|||++||.
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~a~~~~~~~~~~~~~-~~~~~g~~~~~~~~~l~~~l~--~~~ipVv~g~~  137 (248)
T cd02115          61 ITDRETDALAAMGEGMSNLLIAAALEQHGIKAVPLDLTQAGFASP-NQGHVGKITKVSTDRLKSLLE--NGILPILSGFG  137 (248)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEchHHcCeEeC-CCCCcccceeeCHHHHHHHHh--CCcEEEecCeE
Confidence            346677889999999999999999999999999999998876553 333322223334588899998  78999999998


Q ss_pred             ccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHH
Q 023778          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII  190 (277)
Q Consensus       111 ~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~  190 (277)
                      +.+.+ +..+++|+++|++|+.+|.+|+|++++|||||||||++||++++++++|++|+|+|+.+++..|..++||+++.
T Consensus       138 ~~~~~-~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~k~~a~~  216 (248)
T cd02115         138 GTDEK-ETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAAD  216 (248)
T ss_pred             eccCC-ceeeecCCCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcCCcCeECCcCCHHHHHHHHHcCCCccCHHHHH
Confidence            87765 67788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCcEEEEeccC--------CCCCeeEE
Q 023778          191 PVMRYDIPIVIRNIFN--------LSVPGIMI  214 (277)
Q Consensus       191 ~a~~~~i~v~I~n~~~--------~~~~GT~I  214 (277)
                      ++.+++++++|.|+++        ++.+||+|
T Consensus       217 ~~~~~~~~v~I~~~~~~~~l~~~~~~~~GT~I  248 (248)
T cd02115         217 PAARAGIPVRIANTENPGALALFTPDGGGTLI  248 (248)
T ss_pred             HHHHcCCcEEEEeCCCcccccccCCCCCCCCC
Confidence            9999999999999987        45667764

The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.

>PRK14558 pyrH uridylate kinase; Provisional

Probab=99.95  E-value=7.8e-27  Score=206.99  Aligned_cols=182  Identities=23%  Similarity=0.322  Sum_probs=147.1

Q ss_pred             ccHHHHHHHHHHHHhhhc---------C-----------CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccc
Q 023778           11 LSYEFIRSTYNFLSNVDS---------G-----------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREV   70 (277)
Q Consensus        11 ~~~~~i~~~~~~L~~~~~---------~-----------~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~   70 (277)
                      ++.+.|+...++|+++.+         |           ..++...|.+.++||+||+.+++.+|.+.|++++++++.  
T Consensus        20 ~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~g~~~~~~~~~~~d~ig~~~~~ln~~~~~~~l~~~gi~a~~~~~~--   97 (231)
T PRK14558         20 FDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVELKELSPTRADQIGMLGTVINALYLKDIFEKSGLKAVIVSQI--   97 (231)
T ss_pred             cCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEeccc--
Confidence            666777777777765431         1           234456788888899999999999999999999999862  


Q ss_pred             eeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeecccc
Q 023778           71 LIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDG  150 (277)
Q Consensus        71 ~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~G  150 (277)
                      .  ....     + .+.+.+.+..+++  .+.|||++|+.+   ...      +.+|++|+++|..++|+++++||||||
T Consensus        98 ~--~~~~-----~-~~~~~~~i~~ll~--~g~vpV~~G~~~---~~~------~~~D~~a~~lA~~l~a~~l~~~tdVdG  158 (231)
T PRK14558         98 V--NLPS-----V-EPINYDDIELYFR--AGYIVIFAGGTS---NPF------FTTDTAAALRAVEMKADILIKATKVDG  158 (231)
T ss_pred             c--ccch-----h-hhhhHHHHHHHHH--CCCEEEEECCCC---CCC------CCcHHHHHHHHHHcCCCEEEEEecCCe
Confidence            1  1111     1 1234578888887  789999999853   111      235999999999999999999999999


Q ss_pred             ccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCC---------CCeeEEeC
Q 023778          151 VYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS---------VPGIMICR  216 (277)
Q Consensus       151 vyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~---------~~GT~I~~  216 (277)
                      ||++||+++|+|+++++++|+|+.++   |.+++||+++++|.++|+|++|+|+++|+         ..||+|.+
T Consensus       159 vy~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~d~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~  230 (231)
T PRK14558        159 IYDKDPKKFPDAKKIDHLTFSEAIKM---GLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLVVP  230 (231)
T ss_pred             eEccCCCCCCCCeEcccccHHHHHHc---CcccccHHHHHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCC
Confidence            99999999999999999999999886   78999999999999999999999998663         46888854

>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis

Probab=99.94  E-value=4.2e-25  Score=195.59  Aligned_cols=158  Identities=23%  Similarity=0.282  Sum_probs=133.8

Q ss_pred             hhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcccc
Q 023778           33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (277)
Q Consensus        33 ~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~  112 (277)
                      +...+.+.+.|+.+++.+++..|.++|+++..+++.++...+.      ..+    .+.+..+++  .+.|||++||.+.
T Consensus        62 ~~~~~~~~~~~~~l~~~l~~~~l~~~Gi~a~~~~~~~~~~~~~------~~~----~~~l~~~l~--~g~ipVi~g~~g~  129 (229)
T cd04239          62 RATADYIGMLATVMNALALQDALEKLGVKTRVMSAIPMQGVAE------PYI----RRRAIRHLE--KGRIVIFGGGTGN  129 (229)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCHHHHhhhhc------ccc----HHHHHHHHh--CCCEEEEeCccCC
Confidence            4456778889999999999999999999999999887643221      112    366888887  8899999999642


Q ss_pred             CCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHH
Q 023778          113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPV  192 (277)
Q Consensus       113 ~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a  192 (277)
                      .     .    +.+|++|+++|.+|+|++++|||||||||++||+.+|+|++|++++++|+.+++.   +++||.+++++
T Consensus       130 ~-----~----~~sD~~A~~lA~~l~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~---~~~~~~a~~~~  197 (229)
T cd04239         130 P-----G----FTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGL---KVMDATALTLC  197 (229)
T ss_pred             C-----C----CCcHHHHHHHHHHcCCCEEEEEECCCcccCCCCCCCCCCeEEeEEcHHHHHHHhc---CCccHHHHHHH
Confidence            1     1    2479999999999999999999999999999999999999999999999998853   88999999999


Q ss_pred             HhCCCcEEEEeccCCC---------CCeeEE
Q 023778          193 MRYDIPIVIRNIFNLS---------VPGIMI  214 (277)
Q Consensus       193 ~~~~i~v~I~n~~~~~---------~~GT~I  214 (277)
                      .++++|++|.|+++|+         ..||+|
T Consensus       198 ~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i  228 (229)
T cd04239         198 RRNKIPIIVFNGLKPGNLLRALKGEHVGTLI  228 (229)
T ss_pred             HHCCCeEEEECCCChhHHHHHHcCCCCCeEe
Confidence            9999999999998763         357776

Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als

>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis

Probab=99.94  E-value=2.5e-25  Score=199.71  Aligned_cols=166  Identities=17%  Similarity=0.286  Sum_probs=135.1

Q ss_pred             hHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccC
Q 023778           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (277)
Q Consensus        34 ~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~  113 (277)
                      ...+.++|+||..+.++++..|+++|+++.     +++ .+++.|..... +....+.++.+++  .+.|||+++     
T Consensus        65 ~~~~~~~~~Gq~~l~~~~~~~l~~~Gi~~~-----q~l-~t~~~~~~~~~-~~~~~~~i~~ll~--~g~iPVv~~-----  130 (251)
T cd04242          65 PEKQALAAVGQSLLMALYEQLFAQYGIKVA-----QIL-LTRDDFEDRKR-YLNARNTLETLLE--LGVIPIINE-----  130 (251)
T ss_pred             hHHHHHHHHhHHHHHHHHHHHHHHcCCeEE-----EEE-EehhHhcchHH-HHHHHHHHHHHHH--CCCEEEEcC-----
Confidence            345789999999999999999999999963     333 34444432211 1222466778887  789999964     


Q ss_pred             CCCCcee--ccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeC--HHHHHHHH-----hhcCCcc
Q 023778          114 PDNIPTT--LKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS--YQEAWEMS-----YFGANVL  184 (277)
Q Consensus       114 ~~G~~~~--lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is--~~e~~~l~-----~~g~~v~  184 (277)
                       ++.+++  ++|+++|++|+++|.+|+|++++|||||||||++||+.+|++++|++++  ++|+.+++     .++.++|
T Consensus       131 -~d~v~~~~~~~~~~D~~A~~lA~~l~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm  209 (251)
T cd04242         131 -NDTVATEEIRFGDNDRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGM  209 (251)
T ss_pred             -CCCeeeeccccCChHHHHHHHHHHcCCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCc
Confidence             233444  7899999999999999999999999999999999999999999999999  99999985     5678999


Q ss_pred             hH--HHHHHHHhCCCcEEEEeccCCC---------CCeeEE
Q 023778          185 HP--RTIIPVMRYDIPIVIRNIFNLS---------VPGIMI  214 (277)
Q Consensus       185 ~p--~a~~~a~~~~i~v~I~n~~~~~---------~~GT~I  214 (277)
                      +|  +++..+.++|++++|.|++.|+         ..||+|
T Consensus       210 ~~Kl~a~~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i  250 (251)
T cd04242         210 RTKLKAARIATEAGIPVVIANGRKPDVLLDILAGEAVGTLF  250 (251)
T ss_pred             HHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHcCCCCCeEe
Confidence            99  6889999999999999987663         468876

G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir

>PRK00358 pyrH uridylate kinase; Provisional

Probab=99.93  E-value=6.5e-25  Score=194.49  Aligned_cols=156  Identities=22%  Similarity=0.291  Sum_probs=128.3

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCC
Q 023778           35 FTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTP  114 (277)
Q Consensus        35 ~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~  114 (277)
                      ..+.+.+.+++++++++++.|.++|+++..+++..+...+     .   .  ...+.+.++++  .+.|||++|+.+   
T Consensus        66 ~~~~~~~~~~~l~~~ll~~~l~~~Gi~a~~~~~~~~~~~~-----~---~--~~~~~~~~~l~--~g~vPVv~g~~~---  130 (231)
T PRK00358         66 TADYMGMLATVMNALALQDALERAGVDTRVQSAIPMPQVA-----E---P--YIRRRAIRHLE--KGRVVIFAAGTG---  130 (231)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhccccc-----C---c--ccHHHHHHHHH--CCCEEEEECCCC---
Confidence            3566778899999999999999999999876664432211     1   1  12356778887  889999988632   


Q ss_pred             CCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHh
Q 023778          115 DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMR  194 (277)
Q Consensus       115 ~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~  194 (277)
                      +.      .+.+|++|+++|.+|+|+++++||||||||++||+.+|+|++|++++|+|+.++   |++++|+.++++|.+
T Consensus       131 ~~------~~ssD~~A~~lA~~l~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~d~~a~~~a~~  201 (231)
T PRK00358        131 NP------FFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEK---GLKVMDATAISLARD  201 (231)
T ss_pred             CC------CCCchHHHHHHHHHcCCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHHHHHc---CCcchhHHHHHHHHH
Confidence            11      124799999999999999999999999999999999999999999999998776   889999999999999


Q ss_pred             CCCcEEEEeccCCC---------CCeeEE
Q 023778          195 YDIPIVIRNIFNLS---------VPGIMI  214 (277)
Q Consensus       195 ~~i~v~I~n~~~~~---------~~GT~I  214 (277)
                      +++|++|.|+++|+         ..||+|
T Consensus       202 ~~i~v~I~~g~~~~~l~~~l~g~~~GT~i  230 (231)
T PRK00358        202 NKIPIIVFNMNKPGNLKRVVKGEHIGTLV  230 (231)
T ss_pred             cCCcEEEECCCCchHHHHHHCCCCCCEEe
Confidence            99999999987663         468877

>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families

Probab=99.93  E-value=4.4e-26  Score=202.20  Aligned_cols=113  Identities=35%  Similarity=0.487  Sum_probs=108.2

Q ss_pred             HHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeee
Q 023778           89 EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL  168 (277)
Q Consensus        89 ~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~i  168 (277)
                      .+.++++++  .+.|||++||.+.+.+|++++++++++|++|+.||.+|+|++++|||||||||++||+.+|+++++++|
T Consensus       124 ~~~i~~~l~--~~~ipVv~g~~~~~~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l  201 (242)
T PF00696_consen  124 KEAIRELLE--QGIIPVVSGFAGIDDDGEVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPEL  201 (242)
T ss_dssp             HHHHHHHHH--TTSEEEEESEEEEETTSTEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEE
T ss_pred             HHHHHHHHH--CCCEEEEeCCcccCCCCCcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEe
Confidence            488899998  789999999998999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHH------hhcCCcchHHHHHHHHhCCCcEEEEe
Q 023778          169 SYQEAWEMS------YFGANVLHPRTIIPVMRYDIPIVIRN  203 (277)
Q Consensus       169 s~~e~~~l~------~~g~~v~~p~a~~~a~~~~i~v~I~n  203 (277)
                      +++|+.+++      ..|+++.||.|++++.++++|++|+|
T Consensus       202 ~~~e~~~l~~~~~~~~~gm~~k~~~a~~~~~~~~~~v~I~n  242 (242)
T PF00696_consen  202 SYDEAEELASKSGDVTGGMKPKHPAALEAAEEGGIPVHIIN  242 (242)
T ss_dssp             EHHHHHHHHHHTTSSTTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             eHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCcEEEeC
Confidence            999999999      78889999999999999999999986

In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....

>PRK14557 pyrH uridylate kinase; Provisional

Probab=99.92  E-value=1.3e-24  Score=194.54  Aligned_cols=163  Identities=18%  Similarity=0.252  Sum_probs=129.2

Q ss_pred             ChhHHHHHhhhcHHHHHHHHHHHHHHC-CCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcc
Q 023778           32 TESFTDFVVGHGELWSAQMLAAVVRKN-GIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (277)
Q Consensus        32 ~~~~~~~v~s~Ge~~s~~ll~~~L~~~-Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i  110 (277)
                      ++...|.+.++||+||++++..+|++. +..+..+        ++..++...  .+....++.+.++  .|.|||++||.
T Consensus        67 ~~~~~D~ig~~g~~lna~ll~~~l~~~~~~~~~i~--------t~~~~~~~~--~~~~~~~~~~~l~--~g~VvV~~G~~  134 (247)
T PRK14557         67 DRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVM--------TSIPFNAVA--EPYIRLRAVHHLD--NGYIVIFGGGN  134 (247)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhhhCCceeEE--------ecccccccc--chhhHHHHHHHHh--CCCEEEEECCc
Confidence            445678999999999999999999984 5554333        333222211  1112245666676  78899999986


Q ss_pred             ccCCCCCceeccCCCchHHHHHHHHHhCcceEEEee-ccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHH
Q 023778          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT-DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI  189 (277)
Q Consensus       111 ~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~t-DV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~  189 (277)
                      +.   +.++      +|++|+++|..++|+.+++|| |||||||+||+++|+|++|++++|+|+.   ..+.++|++.|+
T Consensus       135 g~---~~~s------tD~lAallA~~l~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~~---~~~~~~~~~~A~  202 (247)
T PRK14557        135 GQ---PFVT------TDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVV---RQNIQVMDQAAL  202 (247)
T ss_pred             CC---CccC------hHHHHHHHHHHhCCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChhhhc---ccCHHHHHHHHH
Confidence            63   4444      499999999999999999995 9999999999999999999999999884   456789999999


Q ss_pred             HHHHhCCCcEEEEeccCCC---------CCeeEEeCCC
Q 023778          190 IPVMRYDIPIVIRNIFNLS---------VPGIMICRPP  218 (277)
Q Consensus       190 ~~a~~~~i~v~I~n~~~~~---------~~GT~I~~~~  218 (277)
                      ++|.++|||++|+|+.+|+         ..||+|.+..
T Consensus       203 ~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~~  240 (247)
T PRK14557        203 LLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDA  240 (247)
T ss_pred             HHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecCc
Confidence            9999999999999998763         5799997653

>PRK12314 gamma-glutamyl kinase; Provisional

Probab=99.92  E-value=2.1e-24  Score=195.29  Aligned_cols=169  Identities=17%  Similarity=0.225  Sum_probs=132.2

Q ss_pred             hHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccC
Q 023778           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (277)
Q Consensus        34 ~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~  113 (277)
                      ..++.++|+||.++.+++..+|+++|+++     +++ +.+.+.|.+.+. +....+.++++++  .|.|||+.+     
T Consensus        75 ~~~~a~aa~Gq~~l~~~~~~~~~~~g~~~-----~q~-llT~~~~~~~~~-~~~~~~~l~~ll~--~g~IPVv~~-----  140 (266)
T PRK12314         75 AEKQALAAVGQPELMSLYSKFFAEYGIVV-----AQI-LLTRDDFDSPKS-RANVKNTFESLLE--LGILPIVNE-----  140 (266)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHcCCeE-----EEE-EEecccccchHH-HHHHHHHHHHHHH--CCCEEEEcC-----
Confidence            45688999999999999999999999975     455 345455543222 2334577888887  889999964     


Q ss_pred             CCCCceecc----CCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCH--HHHHHHHhh-----cCC
Q 023778          114 PDNIPTTLK----RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSYF-----GAN  182 (277)
Q Consensus       114 ~~G~~~~lg----rggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~--~e~~~l~~~-----g~~  182 (277)
                       ++.+++.+    +|++|++|+++|.+++|++++|||||||||++||+.+|+|++|+++++  .|..+++..     |.+
T Consensus       141 -nd~v~~~~~~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~tG  219 (266)
T PRK12314        141 -NDAVATDEIDTKFGDNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTG  219 (266)
T ss_pred             -CCCeeeccccceecchHHHHHHHHHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCcccC
Confidence             23333333    788999999999999999999999999999999999999999999987  566565432     333


Q ss_pred             cc--hHHHHHHHHhCCCcEEEEeccCC---------CCCeeEEeCC
Q 023778          183 VL--HPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMICRP  217 (277)
Q Consensus       183 v~--~p~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~~~  217 (277)
                      +|  +++++..|.++|++++|.|+++|         +..||+|.+.
T Consensus       220 GM~~Kl~aa~~a~~~gv~v~I~~g~~~~~i~~~l~g~~~GT~i~~~  265 (266)
T PRK12314        220 GMVTKLKAAKFLMEAGIKMVLANGFNPSDILDFLEGESIGTLFAPK  265 (266)
T ss_pred             chHHHHHHHHHHHHCCCeEEEEcCCCchHHHHHHcCCCCceEEccC
Confidence            44  55789999999999999998766         3579999653

>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

Probab=99.92  E-value=3.5e-24  Score=190.01  Aligned_cols=156  Identities=24%  Similarity=0.291  Sum_probs=131.3

Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCC
Q 023778           36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD  115 (277)
Q Consensus        36 ~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~  115 (277)
                      .|.+.+.|+++|+.++++.|.+.|+++.++++.+...+..      ..+    .+.++++++  .+.|||++|+.+    
T Consensus        67 ~d~~g~~~~~~n~~ll~~~L~~~Gv~a~~l~~~~~~~~~~------~~~----~~~l~~~l~--~g~ipV~~g~~G----  130 (231)
T cd04254          67 ADYMGMLATVINALALQDALESLGVKTRVMSAIPMQGVAE------PYI----RRRAIRHLE--KGRVVIFAGGTG----  130 (231)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCCeEEEcHHHhhhhhc------ccC----HHHHHHHHH--CCCEEEEECCcC----
Confidence            4567778999999999999999999999999987622111      123    378888887  789999998754    


Q ss_pred             CCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhC
Q 023778          116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRY  195 (277)
Q Consensus       116 G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~  195 (277)
                       ...+    .+|++|+++|.+|+|+++++||||||||++||+.+|+++++++++++|+.+.   |.+++|+.++++|.++
T Consensus       131 -~~~~----~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~~~~~~---~~~~~d~~a~~~a~~~  202 (231)
T cd04254         131 -NPFF----TTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSK---GLKVMDATAFTLCRDN  202 (231)
T ss_pred             -CCCC----CcHHHHHHHHHHcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHHHHHhc---chhhhHHHHHHHHHHC
Confidence             2111    2599999999999999999999999999999999999999999999998763   7889999999999999


Q ss_pred             CCcEEEEeccCCC---------CCeeEEe
Q 023778          196 DIPIVIRNIFNLS---------VPGIMIC  215 (277)
Q Consensus       196 ~i~v~I~n~~~~~---------~~GT~I~  215 (277)
                      |++++|+|+++|+         ..||+|+
T Consensus       203 gi~~~I~~g~~~~~l~~~l~g~~~GT~i~  231 (231)
T cd04254         203 NLPIVVFNINEPGNLLKAVKGEGVGTLIS  231 (231)
T ss_pred             CCeEEEEeCCCccHHHHHHCCCCCCEEeC
Confidence            9999999987663         4688873

The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be

>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]

Probab=99.92  E-value=1.9e-23  Score=182.33  Aligned_cols=181  Identities=23%  Similarity=0.270  Sum_probs=150.2

Q ss_pred             ccHHHHHHHHHHHHhhhcC----------------------CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccc
Q 023778           11 LSYEFIRSTYNFLSNVDSG----------------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (277)
Q Consensus        11 ~~~~~i~~~~~~L~~~~~~----------------------~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~   68 (277)
                      .+.++++..-++|+++...                      -.++...|++-....+++|.++.+.|.+.|++++.+++.
T Consensus        25 id~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~g~~r~~~D~mGmlaTvmNal~L~~aL~~~~~~~~v~sai  104 (238)
T COG0528          25 IDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMDRVTADYMGMLATVMNALALQDALERLGVDTRVQSAI  104 (238)
T ss_pred             CCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHHcCCchhhhhHHHHHHHHHHHHHHHHHHHhcCCcceecccc
Confidence            6788888888888777631                      255667888888899999999999999999999999887


Q ss_pred             cceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeec-
Q 023778           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD-  147 (277)
Q Consensus        69 ~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tD-  147 (277)
                      ....+          ..+.+.+...++++  ++.|+|..|-   +.+.+.+|      |++|+++|..++||-++..|+ 
T Consensus       105 ~~~~~----------~e~~~~~~A~~~l~--~grVvIf~gG---tg~P~fTT------Dt~AALrA~ei~ad~ll~atn~  163 (238)
T COG0528         105 AMPQV----------AEPYSRREAIRHLE--KGRVVIFGGG---TGNPGFTT------DTAAALRAEEIEADVLLKATNK  163 (238)
T ss_pred             cCccc----------cCccCHHHHHHHHH--cCCEEEEeCC---CCCCCCch------HHHHHHHHHHhCCcEEEEeccC
Confidence            66321          12234577888887  8999998872   22333444      999999999999999999995 


Q ss_pred             cccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCC---------CCCeeEEe
Q 023778          148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC  215 (277)
Q Consensus       148 V~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~  215 (277)
                      |||||++||+++|+|+.+++|||+|+.++   +.++|||.|+.++++++||++++|.+.+         ++.||.|.
T Consensus       164 VDGVY~~DPkk~pdA~~~~~Lty~e~l~~---~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~  237 (238)
T COG0528         164 VDGVYDADPKKDPDAKKYDTLTYDEVLKI---GLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVE  237 (238)
T ss_pred             CCceeCCCCCCCCCceecccCCHHHHHHh---cCeeecHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCCceEec
Confidence            99999999999999999999999999887   5899999999999999999999997765         36778774

>PRK14556 pyrH uridylate kinase; Provisional

Probab=99.91  E-value=3e-23  Score=184.84  Aligned_cols=181  Identities=19%  Similarity=0.255  Sum_probs=148.6

Q ss_pred             ccHHHHHHHHHHHHhhhc-C------------------C----CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEcc
Q 023778           11 LSYEFIRSTYNFLSNVDS-G------------------H----ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDT   67 (277)
Q Consensus        11 ~~~~~i~~~~~~L~~~~~-~------------------~----~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~   67 (277)
                      ++.++++.+-++++++.+ |                  .    .++...|++-..+.+++|.++.+.|.+.|++++.+++
T Consensus        35 ~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT~iNal~l~~~l~~~~~~~~v~sa  114 (249)
T PRK14556         35 INVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATADSMGMIATMINALALRDMLISEGVDAEVFSA  114 (249)
T ss_pred             cCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEeec
Confidence            677778777777777654 1                  1    3455789998999999999999999999999999988


Q ss_pred             ccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeec
Q 023778           68 REVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD  147 (277)
Q Consensus        68 ~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tD  147 (277)
                      ....-     +  .++   .+.+.+.++++  +|.|+|+.|+.|   ++.++      +|++|+++|..++|+.+++|||
T Consensus       115 ~~~~~-----~--~e~---~~~~~~~~~l~--~g~vvi~~gg~G---~p~~S------tD~lAallA~~l~Ad~Lii~Td  173 (249)
T PRK14556        115 KGVDG-----L--LKV---ASAHEFNQELA--KGRVLIFAGGTG---NPFVT------TDTTASLRAVEIGADALLKATT  173 (249)
T ss_pred             cccCc-----C--CCC---CCHHHHHHHHh--CCCEEEEECCCC---CCcCC------cHHHHHHHHHHcCCCEEEEEeC
Confidence            65421     1  111   24577888887  788999888654   34444      3999999999999999999999


Q ss_pred             cccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCC---------CCCeeEEe
Q 023778          148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC  215 (277)
Q Consensus       148 V~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~  215 (277)
                      ||||||+||+++|+|+++++++|+|+.+.   +..+|++.+++++.++|||++|+|+++|         +..||+|.
T Consensus       174 VDGVYd~DP~~~p~A~~i~~I~~~e~~~~---~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~  247 (249)
T PRK14556        174 VNGVYDKDPNKYSDAKRFDKVTFSEVVSK---ELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVT  247 (249)
T ss_pred             CCccCCCCCCCCCCceEeeEEchhhhccc---chHhHHHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCceEEE
Confidence            99999999999999999999999998763   5689999999999999999999998766         35799885

>TIGR02075 pyrH_bact uridylate kinase

Probab=99.91  E-value=1.2e-23  Score=186.78  Aligned_cols=156  Identities=22%  Similarity=0.274  Sum_probs=131.4

Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCC
Q 023778           36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD  115 (277)
Q Consensus        36 ~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~  115 (277)
                      .|.+.+.++.+++++++++|.+.|+++.++++.++.. ....         ...+.++++++  .+.|||+.|+.+.   
T Consensus        68 ~d~~g~~~~~l~~~l~~~~L~~~Gi~a~~l~~~~~~~-~~~~---------~~~~~i~~ll~--~g~VpV~~g~~g~---  132 (233)
T TIGR02075        68 ADYMGMLATVINGLALRDALEKLGVKTRVLSAISMPQ-ICES---------YIRRKAIKHLE--KGKVVIFSGGTGN---  132 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCcEEeccccCCC-Cccc---------cCHHHHHHHHH--CCCEEEEECCCCC---
Confidence            5778888999999999999999999999999887641 1111         12377888887  7899999987542   


Q ss_pred             CCceeccCCCchHHHHHHHHHhCcceEEEeec-cccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHh
Q 023778          116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD-VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMR  194 (277)
Q Consensus       116 G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tD-V~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~  194 (277)
                      ..      ..+|++|+++|..|+|++++|||| |||||++||+++|+++++++++|+|+.++   |.+++|+.++++|.+
T Consensus       133 ~~------~s~D~~a~~lA~~l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~e~~~~---~~~~~d~~~~~~a~~  203 (233)
T TIGR02075       133 PF------FTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYETITYNEALKK---NLKVMDLTAFALARD  203 (233)
T ss_pred             CC------CCchHHHHHHHHHcCCCEEEEeecccCeEEcCCCCCCCCCeECcEecHHHHHhc---CHHHHHHHHHHHHHH
Confidence            11      135999999999999999999999 99999999999999999999999998765   778999999999999


Q ss_pred             CCCcEEEEeccCCC---------CCeeEEe
Q 023778          195 YDIPIVIRNIFNLS---------VPGIMIC  215 (277)
Q Consensus       195 ~~i~v~I~n~~~~~---------~~GT~I~  215 (277)
                      +|++++|+|+++|+         ..||+|+
T Consensus       204 ~~i~v~i~~g~~~~~l~~~l~g~~~GT~i~  233 (233)
T TIGR02075       204 NNLPIVVFNIDEPGALKKVILGKGIGTLVS  233 (233)
T ss_pred             CCCeEEEEeCCCcchHHHHHCCCCCCEEeC
Confidence            99999999987663         5688773

This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.

>PRK13402 gamma-glutamyl kinase; Provisional

Probab=99.90  E-value=1.1e-22  Score=191.36  Aligned_cols=195  Identities=17%  Similarity=0.248  Sum_probs=149.6

Q ss_pred             cccHHHHHHHHHHHHhhhc----------C-------C------CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEc
Q 023778           10 ELSYEFIRSTYNFLSNVDS----------G-------H------ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMD   66 (277)
Q Consensus        10 ~~~~~~i~~~~~~L~~~~~----------~-------~------~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~   66 (277)
                      .++.+++....+++.++.+          |       .      ..-..++.+.+.|+.++...+...|.++|+++..  
T Consensus        23 ~l~~~~i~~la~~I~~l~~~G~~vvlVsSGava~G~~~l~~~~~~~~~~~qalaavGq~~l~~~~~~~f~~~g~~~aq--  100 (368)
T PRK13402         23 GCSSHYLLGLVQQIVYLKDQGHQVVLVSSGAVAAGYHKLGFIDRPSVPEKQAMAAAGQGLLMATWSKLFLSHGFPAAQ--  100 (368)
T ss_pred             CcCHHHHHHHHHHHHHHHHCCCEEEEEeCChhhcCccccCCCCCCCccHHHHHHHhhHHHHHHHHHHHHHHCCCeEEE--
Confidence            3567777777766665442          1       0      1223467788999999999999999999999843  


Q ss_pred             cccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCcee--ccCCCchHHHHHHHHHhCcceEEE
Q 023778           67 TREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTT--LKRDGSDFSAAIMGALLRAHQVTI  144 (277)
Q Consensus        67 ~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~--lgrggsD~~A~~lA~~l~A~~l~i  144 (277)
                         +++ +.+.+.+. -.|...+..+..+++  .+.|||+..      ++.+++  +++|++|++|+++|.+++|+.++|
T Consensus       101 ---vLl-T~~d~~~~-~~y~n~~~~l~~LL~--~g~IPIine------nD~v~~~el~~GdnD~lAa~vA~~l~Ad~Lii  167 (368)
T PRK13402        101 ---LLL-THGDLRDR-ERYINIRNTINVLLE--RGILPIINE------NDAVTTDRLKVGDNDNLSAMVAALADADTLII  167 (368)
T ss_pred             ---EEE-ecchhhhH-HHHHHHHHHHHHHHH--CCcEEEEeC------CCcEeecccccCChHHHHHHHHHHhCCCEEEE
Confidence               333 33333211 113334577888887  889999963      223343  778999999999999999999999


Q ss_pred             eeccccccccCCCCCCCCeEEeeeCH--HHHHHHH-----hhcCCcchH--HHHHHHHhCCCcEEEEeccCC--------
Q 023778          145 WTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMS-----YFGANVLHP--RTIIPVMRYDIPIVIRNIFNL--------  207 (277)
Q Consensus       145 ~tDV~Gvyt~dP~~~~~a~~i~~is~--~e~~~l~-----~~g~~v~~p--~a~~~a~~~~i~v~I~n~~~~--------  207 (277)
                      ||||||||++||+.+|+|++|+++++  +|+.+++     ..|.++|+|  .++..|.++|+|++|.|+..|        
T Consensus       168 lTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~  247 (368)
T PRK13402        168 LSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTADIFNQLLK  247 (368)
T ss_pred             EecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCCchHHHHHhc
Confidence            99999999999999999999999997  7777776     357889999  588999999999999999876        


Q ss_pred             -CCCeeEEeCCCC
Q 023778          208 -SVPGIMICRPPV  219 (277)
Q Consensus       208 -~~~GT~I~~~~~  219 (277)
                       +..||+|.+...
T Consensus       248 g~~~GT~i~~~~~  260 (368)
T PRK13402        248 GQNPGTYFTPEEK  260 (368)
T ss_pred             CCCCceEEecCCC
Confidence             357999987543

>PRK05429 gamma-glutamyl kinase; Provisional

Probab=99.88  E-value=2e-21  Score=183.50  Aligned_cols=171  Identities=19%  Similarity=0.247  Sum_probs=134.1

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecC-ccccC
Q 023778           35 FTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATG-FIAST  113 (277)
Q Consensus        35 ~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G-~i~~~  113 (277)
                      ..+.+.+.||..+++++.+.|+++|+++..+     + ++.+.+.. ...+......+..+++  .+.|||+++ +... 
T Consensus        75 ~~qa~aavGq~~L~~~~~~~l~~~gi~~~qi-----l-~t~~d~~~-~~~~ln~~~~i~~Ll~--~g~IPVi~~nd~v~-  144 (372)
T PRK05429         75 EKQAAAAVGQSRLMQAYEELFARYGITVAQI-----L-LTRDDLED-RERYLNARNTLRTLLE--LGVVPIINENDTVA-  144 (372)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHCCCCEEEE-----E-eehhHhhh-hhHhhhHHHHHHHHHH--CCCEEEEcCCCccc-
Confidence            4577889999999999999999999997653     2 23322211 1112223466778887  789999973 2111 


Q ss_pred             CCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCH--HHHHHHHh-----hcCCcchH
Q 023778          114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSY-----FGANVLHP  186 (277)
Q Consensus       114 ~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~--~e~~~l~~-----~g~~v~~p  186 (277)
                          ...+++|++|++|+++|.+++|+.++|||||||||++||+.+|++++|+++++  +|+.+++.     .|.++|+|
T Consensus       145 ----~~~l~~gd~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~  220 (372)
T PRK05429        145 ----TDEIKFGDNDTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMAT  220 (372)
T ss_pred             ----eecccccChHHHHHHHHHHcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHH
Confidence                11256789999999999999999999999999999999999999999999998  67888853     56789999


Q ss_pred             --HHHHHHHhCCCcEEEEeccCC---------CCCeeEEeCCCC
Q 023778          187 --RTIIPVMRYDIPIVIRNIFNL---------SVPGIMICRPPV  219 (277)
Q Consensus       187 --~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~~~~~  219 (277)
                        .++..+.++|++++|.|+..|         +..||+|.+...
T Consensus       221 Kl~aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~  264 (372)
T PRK05429        221 KLEAARIATRAGIPVVIASGREPDVLLRLLAGEAVGTLFLPQEK  264 (372)
T ss_pred             HHHHHHHHHHCCCeEEEEcCCCccHHHHHhcCCCCCEEEeeCCc
Confidence              688999999999999998765         357999987543

>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

Probab=99.88  E-value=1.7e-21  Score=171.73  Aligned_cols=146  Identities=23%  Similarity=0.231  Sum_probs=119.1

Q ss_pred             hhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcccc
Q 023778           33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (277)
Q Consensus        33 ~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~  112 (277)
                      +...|.+...++.++++++...|. .|+++..+                  +    .+.+.++++  .+.|||++||++ 
T Consensus        60 ~~~~d~~g~~~~~ln~~~~~~~l~-~~~~~~~~------------------~----~~~~~~~l~--~g~vpv~~G~~~-  113 (221)
T cd04253          60 EAFLDEIGIMATRLNARLLIAALG-DAYPPVPT------------------S----YEEALEAMF--TGKIVVMGGTEP-  113 (221)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHh-cCCCcCCC------------------C----HHHHHHHHH--cCCeEEEECCCC-
Confidence            334566667788888888887776 66654322                  1    145667777  789999999964 


Q ss_pred             CCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhh-----cC-CcchH
Q 023778          113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-----GA-NVLHP  186 (277)
Q Consensus       113 ~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~-----g~-~v~~p  186 (277)
                         + .+      +|++|+++|..++|+++++||||||||++||+.+|+|++|++++++|+.+++..     |. .++|+
T Consensus       114 ---~-~s------~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~d~  183 (221)
T cd04253         114 ---G-QS------TDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDP  183 (221)
T ss_pred             ---C-Cc------cHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCCCCeEeeEeCHHHHHHHccCCCcCCCCCcchHH
Confidence               2 22      399999999999999999999999999999999999999999999999999765     43 57899


Q ss_pred             HHHHHHHhCCCcEEEEeccCCC---------CCeeEE
Q 023778          187 RTIIPVMRYDIPIVIRNIFNLS---------VPGIMI  214 (277)
Q Consensus       187 ~a~~~a~~~~i~v~I~n~~~~~---------~~GT~I  214 (277)
                      .+++++.+++++++|+|+.+|+         ..||+|
T Consensus       184 ~a~~~~~~~gi~~~I~~g~~p~~l~~~l~g~~~GT~I  220 (221)
T cd04253         184 LAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTII  220 (221)
T ss_pred             HHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCeEe
Confidence            9999999999999999987663         468876

The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi

>TIGR01027 proB glutamate 5-kinase

Probab=99.87  E-value=3e-21  Score=181.75  Aligned_cols=170  Identities=17%  Similarity=0.248  Sum_probs=132.9

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEec-CccccC
Q 023778           35 FTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIAT-GFIAST  113 (277)
Q Consensus        35 ~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~-G~i~~~  113 (277)
                      .++.+.+.|+.++..++...|.++|+++..     ++ .+.+.+.+. -.+......+..+++  .+.|||++ ++... 
T Consensus        67 ~~qa~aa~Gq~~l~~~~~~~l~~~Gi~~aq-----il-lt~~d~~~~-~~~lna~~~i~~Ll~--~g~iPVi~end~v~-  136 (363)
T TIGR01027        67 EKQALAAVGQVRLMQLYEQLFSQYGIKVAQ-----IL-LTRADFSDR-ERYLNARNTLEALLE--LGVVPIINENDTVA-  136 (363)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHcCCeEEE-----EE-EeccchhhH-HHHHHHHHHHHHHHh--CCCEEEEeCCCcee-
Confidence            457889999999999999999999999633     33 343333221 112234467788887  78999996 32111 


Q ss_pred             CCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHH--HHHHHH-----hhcCCcchH
Q 023778          114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ--EAWEMS-----YFGANVLHP  186 (277)
Q Consensus       114 ~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~--e~~~l~-----~~g~~v~~p  186 (277)
                          +..+++|++|++|+++|.+++|+.++|||||||||++||+.+|+|++|+++++.  +..+++     .+|.++|+|
T Consensus       137 ----~~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~  212 (363)
T TIGR01027       137 ----TEEIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMRT  212 (363)
T ss_pred             ----eeecCcCChHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCchH
Confidence                133677899999999999999999999999999999999999999999999864  455564     367789999


Q ss_pred             H--HHHHHHhCCCcEEEEeccCCC---------CCeeEEeCCC
Q 023778          187 R--TIIPVMRYDIPIVIRNIFNLS---------VPGIMICRPP  218 (277)
Q Consensus       187 ~--a~~~a~~~~i~v~I~n~~~~~---------~~GT~I~~~~  218 (277)
                      +  |+..|.++|++++|.|+..|+         ..||+|.+..
T Consensus       213 Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~  255 (363)
T TIGR01027       213 KLQAADLATRAGVPVIIASGSKPEKIADALEGAPVGTLFHAQA  255 (363)
T ss_pred             HHHHHHHHHHCCCeEEEEeCCCccHHHHHhcCCCCcEEEeeCC
Confidence            7  889999999999999998653         4699998754

Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.

>TIGR02076 pyrH_arch uridylate kinase, putative

Probab=99.86  E-value=5.3e-21  Score=168.44  Aligned_cols=147  Identities=24%  Similarity=0.257  Sum_probs=118.2

Q ss_pred             hhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcccc
Q 023778           33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (277)
Q Consensus        33 ~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~  112 (277)
                      +...|.+...+++++++++...|...++++...+                  .    ....+.+.  .+.+||++||++ 
T Consensus        59 ~~~~~~~g~~~~~ln~~~l~~ll~~~~~~~~~~~------------------~----~~~~~~l~--~g~ipv~~G~~~-  113 (221)
T TIGR02076        59 ETFLDEIGIDATRLNAMLLIAALGDDAYPKVPEN------------------F----EEALEAMS--LGKIVVMGGTHP-  113 (221)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHhcCCCCcCCC------------------H----HHHHHHHH--cCCEEEEcCCCC-
Confidence            3345677778899999998888887777754221                  1    23344555  678999999862 


Q ss_pred             CCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHh---hcCC---cchH
Q 023778          113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY---FGAN---VLHP  186 (277)
Q Consensus       113 ~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~---~g~~---v~~p  186 (277)
                         | .+      +|++|+++|.+++|+++++||||||||++||+++|+|++|++++++|+.+++.   +|.+   .+++
T Consensus       114 ---~-~s------~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~~~  183 (221)
T TIGR02076       114 ---G-HT------TDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDP  183 (221)
T ss_pred             ---C-CC------cHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEeeEECHHHHHHHhcCCCccCCCCceeHH
Confidence               3 22      49999999999999999999999999999999999999999999999999876   2333   5799


Q ss_pred             HHHHHHHhCCCcEEEEeccCCC---------CCeeEE
Q 023778          187 RTIIPVMRYDIPIVIRNIFNLS---------VPGIMI  214 (277)
Q Consensus       187 ~a~~~a~~~~i~v~I~n~~~~~---------~~GT~I  214 (277)
                      .+++.+.+++++++|.|+.+|+         ..||+|
T Consensus       184 ~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i  220 (221)
T TIGR02076       184 LAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTII  220 (221)
T ss_pred             HHHHHHHHCCCcEEEECCCCccHHHHHHCCCCCCeEe
Confidence            9999999999999999987663         358876

This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.

>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms

Probab=99.85  E-value=1.4e-20  Score=168.72  Aligned_cols=145  Identities=15%  Similarity=0.191  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHCCCCeEEEccccceeecCCCCCC-cCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCc
Q 023778           48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS  126 (277)
Q Consensus        48 ~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggs  126 (277)
                      ...++++|.++|+++.++++.++.....   |. ..++    .+.++++++  .+.|||++|+++.+.+|++.++   ++
T Consensus        82 n~~~~~~l~~~g~~a~~l~~~~~~~~~~---g~~~~~~----~~~l~~ll~--~g~iPVi~~~~~~~~~~~~~~~---~~  149 (252)
T cd04241          82 NSIVVDALLEAGVPAVSVPPSSFFVTEN---GRIVSFD----LEVIKELLD--RGFVPVLHGDVVLDEGGGITIL---SG  149 (252)
T ss_pred             HHHHHHHHHHCCCCeEEEChHHeEEecC---Ceeeeec----HHHHHHHHh--CCCEEEEcCCeEecCCCCeEEe---Ch
Confidence            3578899999999999999998765432   22 2233    478888998  8999999998888888877765   38


Q ss_pred             hHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhh-------cCCcchHH--HHHHHHhCCC
Q 023778          127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-------GANVLHPR--TIIPVMRYDI  197 (277)
Q Consensus       127 D~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~-------g~~v~~p~--a~~~a~~~~i  197 (277)
                      |++|+.+|.+|+|++++|||||||||++||   |++++|++++++|+.++...       ...+|.++  ++..+.++|+
T Consensus       150 D~~A~~lA~~l~A~~li~ltdv~Gv~~~~P---~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a~~~Gv  226 (252)
T cd04241         150 DDIVVELAKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLELARRGI  226 (252)
T ss_pred             HHHHHHHHHHcCCCEEEEEeCCCeeECCCC---CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999   88999999999888888642       34688885  6777888999


Q ss_pred             cEEEEeccCC
Q 023778          198 PIVIRNIFNL  207 (277)
Q Consensus       198 ~v~I~n~~~~  207 (277)
                      +++|.|+.+|
T Consensus       227 ~v~I~~g~~~  236 (252)
T cd04241         227 EVYIFNGDKP  236 (252)
T ss_pred             eEEEEeCCCH
Confidence            9999998765

Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).

>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional

Probab=99.85  E-value=2.7e-20  Score=168.60  Aligned_cols=163  Identities=14%  Similarity=0.211  Sum_probs=131.1

Q ss_pred             HhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCC------------------CC-CC-cCCCchHHHHHHHHHhhc
Q 023778           39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT------------------SS-NQ-VDPDFSESEKRLEKWFSQ   98 (277)
Q Consensus        39 v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~------------------~~-g~-~~~~~~~~~~~i~~~l~~   98 (277)
                      ..++| .++..++ +.|.++|++|+++++.+..+++..                  .| |. .+++    .+.++.+++ 
T Consensus        75 ~~a~~-~ln~~lv-~~L~~~Gv~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~----~~~i~~ll~-  147 (268)
T PRK14058         75 IMAMA-LINKQLV-ERLQSLGVNAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVN----TDLLKLLLK-  147 (268)
T ss_pred             HHHHH-HHHHHHH-HHHHhCCCCccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEEC----HHHHHHHHH-
Confidence            55788 6777776 599999999999999987543211                  11 11 1233    378999998 


Q ss_pred             CCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHh
Q 023778           99 SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY  178 (277)
Q Consensus        99 ~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~  178 (277)
                       .+.|||++|+ +.+..|+++++   ++|++|+.+|.+|+|++++|||||||||++||+   +++++++++++|+.++..
T Consensus       148 -~g~iPVi~~~-~~~~~g~~~~i---~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~  219 (268)
T PRK14058        148 -AGYLPVVAPP-ALSEEGEPLNV---DGDRAAAAIAGALKAEALVLLSDVPGLLRDPPD---EGSLIERITPEEAEELSK  219 (268)
T ss_pred             -CCCEEEEeCc-eECCCCcEEec---CHHHHHHHHHHHcCCCEEEEEeCChhhccCCCC---CCcCccCcCHHHHHHHhh
Confidence             8899999997 66677888766   589999999999999999999999999999984   478999999999999977


Q ss_pred             hcCCcchHH--HHHHHHhCCC-cEEEEeccCCC-------CCeeEEeC
Q 023778          179 FGANVLHPR--TIIPVMRYDI-PIVIRNIFNLS-------VPGIMICR  216 (277)
Q Consensus       179 ~g~~v~~p~--a~~~a~~~~i-~v~I~n~~~~~-------~~GT~I~~  216 (277)
                      ....+|.|+  ++..+.++|+ +++|.|+..|+       ..||+|.+
T Consensus       220 ~~tGgM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l~G~GT~I~~  267 (268)
T PRK14058        220 AAGGGMKKKVLMAAEAVEGGVGRVIIADANVDDPISAALAGEGTVIVN  267 (268)
T ss_pred             ccCCccHHHHHHHHHHHHcCCCEEEEEcCCCcchHHHHhCCCceEEec
Confidence            777889885  6777888899 69999987664       35999864

>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis

Probab=99.83  E-value=7.4e-20  Score=166.64  Aligned_cols=154  Identities=14%  Similarity=0.186  Sum_probs=123.2

Q ss_pred             cHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCC------------cCCCchHHHHHHHHHhhcCCCceEEecCcc
Q 023778           43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ------------VDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (277)
Q Consensus        43 Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~------------~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i  110 (277)
                      |+ ++.. +++.|++.|++++++++.+..+++..+++.            .++ .....+.++++++  .+.|||++| +
T Consensus        93 g~-ln~~-l~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i-~~i~~~~i~~ll~--~g~IPVi~~-~  166 (279)
T cd04250          93 GK-VNKE-IVSLINRAGGKAVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEV-TEVNPELLETLLE--AGYIPVIAP-V  166 (279)
T ss_pred             Cc-hHHH-HHHHHHHcCCCcceeecCCCCEEEEEECcccccCCCcccCcccce-EEEcHHHHHHHHH--CCCeEEEcC-C
Confidence            74 5555 599999999999999999876665444331            011 0112478888888  889999999 5


Q ss_pred             ccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhh--cCCcchHH-
Q 023778          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF--GANVLHPR-  187 (277)
Q Consensus       111 ~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~--g~~v~~p~-  187 (277)
                      +.++.|++++++   +|.+|+.+|.+|+|++++|||||||||++||+   ++++|++++++|+.+++..  ...+|.++ 
T Consensus       167 ~~~~~g~~~~~~---~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~~~tGgm~~Kl  240 (279)
T cd04250         167 GVGEDGETYNIN---ADTAAGAIAAALKAEKLILLTDVAGVLDDPND---PGSLISEISLKEAEELIADGIISGGMIPKV  240 (279)
T ss_pred             ccCCCCcEEEeC---HHHHHHHHHHHhCCCEEEEEECCcccccCCCC---CccccccCCHHHHHHHHHcCCCCCchHHHH
Confidence            888889888774   89999999999999999999999999999985   4799999999999999754  35788885 


Q ss_pred             -HHHHHHhCCCc-EEEEeccCCC
Q 023778          188 -TIIPVMRYDIP-IVIRNIFNLS  208 (277)
Q Consensus       188 -a~~~a~~~~i~-v~I~n~~~~~  208 (277)
                       ++..+.++|++ ++|.|+..|+
T Consensus       241 ~~a~~a~~~g~~~v~I~~g~~~~  263 (279)
T cd04250         241 EACIEALEGGVKAAHIIDGRVPH  263 (279)
T ss_pred             HHHHHHHHhCCCEEEEeCCCCCc
Confidence             66677788886 9999987664

In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A

>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis

Probab=99.81  E-value=1.7e-19  Score=161.96  Aligned_cols=156  Identities=17%  Similarity=0.196  Sum_probs=120.4

Q ss_pred             hHHHHHhhh-cHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCC-------C-cCCCchHHHHHHHHHhhcCCCceE
Q 023778           34 SFTDFVVGH-GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-------Q-VDPDFSESEKRLEKWFSQSPSNTI  104 (277)
Q Consensus        34 ~~~~~v~s~-Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g-------~-~~~~~~~~~~~i~~~l~~~~~~Vp  104 (277)
                      ...+.+.+. ++.++..++...+ ++|++++++++.+..+++..+++       . .+++    .+.++.+++  .+.||
T Consensus        67 ~~l~~~~~~~~~~~n~~lv~~l~-~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~G~v~~i~----~~~l~~ll~--~g~ip  139 (252)
T cd04249          67 EQIPYITGALAGTANKQLMAQAI-KAGLKPVGLSLADGGMTAVTQLDPELGAVGKATAND----PSLLNDLLK--AGFLP  139 (252)
T ss_pred             HHHHHHHHHHcCcccHHHHHHHH-hCCCCceeeeccCCCEEEEEEcCCCCCcccceEEEc----HHHHHHHHH--CCCEE
Confidence            344454443 5566666666665 89999999999987666543332       1 1233    378888888  88999


Q ss_pred             EecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc--CC
Q 023778          105 IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--AN  182 (277)
Q Consensus       105 Vv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g--~~  182 (277)
                      |++| ++.+++|++++++   +|++|+.+|.+|+|+ +++||||+|||+.||      +++++++++|+.++...|  ..
T Consensus       140 Vi~~-~g~~~~g~~~~~~---~D~~A~~lA~~l~A~-~i~ltdv~Gv~~~~~------~~i~~i~~~e~~~~~~~g~~~g  208 (252)
T cd04249         140 IISS-IGADDQGQLMNVN---ADQAATAIAQLLNAD-LVLLSDVSGVLDADK------QLISELNAKQAAELIEQGVITD  208 (252)
T ss_pred             EECC-CEECCCCCEeeec---HHHHHHHHHHHcCCC-EEEEeCCcccCCCCC------cCccccCHHHHHHHHhcCCCcC
Confidence            9998 4889999999885   899999999999999 689999999998765      689999999999997654  35


Q ss_pred             cchH---HHHHHHHhCCCcEEEEeccCC
Q 023778          183 VLHP---RTIIPVMRYDIPIVIRNIFNL  207 (277)
Q Consensus       183 v~~p---~a~~~a~~~~i~v~I~n~~~~  207 (277)
                      +|.|   .|++.+...+++++|.|+..|
T Consensus       209 Gm~~kl~~a~~~~~~~~~~v~I~~g~~~  236 (252)
T cd04249         209 GMIVKVNAALDAAQSLRRGIDIASWQYP  236 (252)
T ss_pred             CcHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence            6666   466666767789999998765

There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).

>PRK00942 acetylglutamate kinase; Provisional

Probab=99.81  E-value=3.3e-19  Score=162.62  Aligned_cols=156  Identities=19%  Similarity=0.221  Sum_probs=125.0

Q ss_pred             cHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCC---------CC-cCCCchHHHHHHHHHhhcCCCceEEecCcccc
Q 023778           43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSS---------NQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (277)
Q Consensus        43 Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~---------g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~  112 (277)
                      | .++ ..+.+.|+++|+++.++++.+..+++...+         |. ..++    .+.++++++  .|.|||+++ ++.
T Consensus       102 G-~l~-~~i~~~L~~~Gv~a~~l~~~~~~~~ta~~~~~~~~~~~~g~i~~i~----~~~l~~ll~--~g~vpVv~~-~~~  172 (283)
T PRK00942        102 G-KVN-KELVSLINKHGGKAVGLSGKDGGLITAKKLEEDEDLGFVGEVTPVN----PALLEALLE--AGYIPVISP-IGV  172 (283)
T ss_pred             C-chH-HHHHHHHHhCCCCccceeeccCCEEEEEECCCCCCCccccceEEEC----HHHHHHHHH--CCCEEEEcC-cEE
Confidence            6 455 445599999999999999998766655333         11 1233    478899998  889999997 588


Q ss_pred             CCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc--CCcchHH--H
Q 023778          113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR--T  188 (277)
Q Consensus       113 ~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p~--a  188 (277)
                      +.+|++++++   +|++|+.||.+|+|++++|||||||||++      +++++++++++|+.+++..+  .++|.|+  +
T Consensus       173 ~~~g~~~~l~---~D~~A~~lA~~l~A~~li~~tdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~tggm~~Kl~~  243 (283)
T PRK00942        173 GEDGETYNIN---ADTAAGAIAAALGAEKLILLTDVPGVLDD------KGQLISELTASEAEELIEDGVITGGMIPKVEA  243 (283)
T ss_pred             CCCCcEEEEC---HHHHHHHHHHHcCCCEEEEEECCcccccC------CCcccccCCHHHHHHHHHcCCCCCchHHHHHH
Confidence            9999998884   89999999999999999999999999986      47899999999999998654  3678775  5


Q ss_pred             HHHHHhCCC-cEEEEeccCC----------CCCeeEEeC
Q 023778          189 IIPVMRYDI-PIVIRNIFNL----------SVPGIMICR  216 (277)
Q Consensus       189 ~~~a~~~~i-~v~I~n~~~~----------~~~GT~I~~  216 (277)
                      +..+.++|+ +++|.|+..|          +..||+|.+
T Consensus       244 a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~  282 (283)
T PRK00942        244 ALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVP  282 (283)
T ss_pred             HHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEec
Confidence            566677887 4999987654          347999865

>TIGR00761 argB acetylglutamate kinase

Probab=99.80  E-value=3.1e-19  Score=158.19  Aligned_cols=143  Identities=17%  Similarity=0.237  Sum_probs=113.3

Q ss_pred             cHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCC-----CC-cCCCchHHHHHHHHHhhcCCCceEEecCccccCCCC
Q 023778           43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSS-----NQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDN  116 (277)
Q Consensus        43 Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~-----g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G  116 (277)
                      ++.++. .+.+.|+++|++++++++.+..+++...+     +. .++. ....+.++++++  .+.|||++|+ +.+.+|
T Consensus        75 ~g~~~~-~i~~~L~~~G~~a~~l~~~~~~~it~~~~~~~~~~~~g~i~-~i~~~~i~~~l~--~g~IPVi~~~-~~~~~g  149 (231)
T TIGR00761        75 IGQVNK-ELVALLNKHGINAIGLTGGDGQLFTARSLDKEDLGYVGEIK-KVNKALLEALLK--AGYIPVISSL-ALTAEG  149 (231)
T ss_pred             hcchHH-HHHHHHHhCCCCcccccCCCCCEEEEEECCCccCCcccceE-EEcHHHHHHHHH--CCCeEEECCC-ccCCCC
Confidence            334554 45569999999999999998644443222     11 1111 112488999998  8899999995 888889


Q ss_pred             CceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc--CCcchHH--HHHHH
Q 023778          117 IPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR--TIIPV  192 (277)
Q Consensus       117 ~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p~--a~~~a  192 (277)
                      ++++++   +|++|+.||.+|+|++++|||||||||++||+     ++|++++++|+.++++.|  ..+|.|+  ++..+
T Consensus       150 ~~~~l~---sD~~A~~lA~~l~A~~li~ltdv~Gv~~~d~~-----~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a~~a  221 (231)
T TIGR00761       150 QALNVN---ADTAAGALAAALGAEKLVLLTDVPGILNGDGQ-----SLISEIPLEEIEQLIEQGIITGGMIPKVNAALEA  221 (231)
T ss_pred             cEEEeC---HHHHHHHHHHHcCCCEEEEEECCCCeecCCCC-----eeccccCHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence            999885   89999999999999999999999999999874     799999999999998866  5788885  66777


Q ss_pred             HhCCCc
Q 023778          193 MRYDIP  198 (277)
Q Consensus       193 ~~~~i~  198 (277)
                      .++|++
T Consensus       222 ~~~gv~  227 (231)
T TIGR00761       222 LRGGVK  227 (231)
T ss_pred             HHcCCC
Confidence            888887

This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.

>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like

Probab=99.79  E-value=7.7e-19  Score=157.95  Aligned_cols=147  Identities=17%  Similarity=0.238  Sum_probs=117.9

Q ss_pred             cHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCC----------CC-cCCCchHHHHHHHHHhhcCCCceEEecCccc
Q 023778           43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSS----------NQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (277)
Q Consensus        43 Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~----------g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~  111 (277)
                      | .++.. +++.|+++|++++++++.+..+++..++          |. ..++    .+.++.+++  .+.|||++| ++
T Consensus        77 g-~ln~~-i~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~----~~~l~~ll~--~g~ipVv~~-~~  147 (256)
T cd04238          77 G-KVNKE-LVSLLNRAGGKAVGLSGKDGGLIKAEKKEEKDIDLGFVGEVTEVN----PELLETLLE--AGYIPVIAP-IA  147 (256)
T ss_pred             C-chHHH-HHHHHHhCCCCCCCcccccCCEEEEEECCCCCCCcccccceEEEC----HHHHHHHHH--CCCEEEECC-cE
Confidence            6 45555 4999999999999999998766654332          21 1233    378888988  889999998 58


Q ss_pred             cCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc--CCcchHH--
Q 023778          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR--  187 (277)
Q Consensus       112 ~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p~--  187 (277)
                      .++.|++++++   +|++|+++|.+|+|++++|||||+|||++      +++++++++++|+.++...+  ...|.|+  
T Consensus       148 ~~~~g~~~~~~---~D~~A~~lA~~l~a~~li~ltdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~  218 (256)
T cd04238         148 VDEDGETYNVN---ADTAAGAIAAALKAEKLILLTDVPGVLDD------PGSLISELTPKEAEELIEDGVISGGMIPKVE  218 (256)
T ss_pred             ECCCCcEEEEC---HHHHHHHHHHHcCCCEEEEEeCCccccCC------CCCccccCCHHHHHHHHHcCCCCCChHHHHH
Confidence            88889988874   89999999999999999999999999986      27899999999999987533  4778885  


Q ss_pred             HHHHHHhCCC-cEEEEeccCC
Q 023778          188 TIIPVMRYDI-PIVIRNIFNL  207 (277)
Q Consensus       188 a~~~a~~~~i-~v~I~n~~~~  207 (277)
                      ++..+.++++ +++|.|+..|
T Consensus       219 ~a~~~~~~g~~~v~I~~g~~~  239 (256)
T cd04238         219 AALEALEGGVRKVHIIDGRVP  239 (256)
T ss_pred             HHHHHHHhCCCEEEEeCCCCC
Confidence            5566667776 5999998765

Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).

>PLN02512 acetylglutamate kinase

Probab=99.79  E-value=2.5e-18  Score=158.78  Aligned_cols=155  Identities=17%  Similarity=0.210  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHCCCCeEEEccccceeecCCCCC---------C-cCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCC
Q 023778           48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN---------Q-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNI  117 (277)
Q Consensus        48 ~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g---------~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~  117 (277)
                      ...+++.|+++|++++++++.+..+++..+++         . ..++    .+.++.+++  .+.|||++|+ +.++.|+
T Consensus       129 n~~lv~~L~~~Gv~av~l~g~d~~~i~a~~~~~~~~~~~~G~i~~v~----~~~i~~lL~--~g~IPVi~~~-~~d~~g~  201 (309)
T PLN02512        129 NKSLVSLINKAGGTAVGLSGKDGRLLRARPSPNSADLGFVGEVTRVD----PTVLRPLVD--DGHIPVIATV-AADEDGQ  201 (309)
T ss_pred             HHHHHHHHHHcCCCeEEeehhhCCEEEEEEcCcCccccccceeeecC----HHHHHHHHh--CCCEEEEeCc-eECCCCC
Confidence            56688999999999999999885444433221         1 1233    378899998  8899999996 8888898


Q ss_pred             ceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc--CCcchHH--HHHHHH
Q 023778          118 PTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR--TIIPVM  193 (277)
Q Consensus       118 ~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p~--a~~~a~  193 (277)
                      +.++   ++|.+|+.||.+|+|++++|||||||||+++|   +++++|++++++|+.++...|  ..+|.|+  ++..+.
T Consensus       202 ~~~i---~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~~---~~~~lI~~i~~~e~~~l~~~~~vtGGM~~Kl~aa~~a~  275 (309)
T PLN02512        202 AYNI---NADTAAGEIAAALGAEKLILLTDVAGVLEDKD---DPGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSL  275 (309)
T ss_pred             Eecc---CHHHHHHHHHHHcCCCEEEEEeCCcceeCCCC---CCcCCCcccCHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence            8777   48999999999999999999999999999864   347899999999999987543  5789885  556677


Q ss_pred             hCCCc-EEEEeccCC----------CCCeeEEe
Q 023778          194 RYDIP-IVIRNIFNL----------SVPGIMIC  215 (277)
Q Consensus       194 ~~~i~-v~I~n~~~~----------~~~GT~I~  215 (277)
                      ++|++ ++|.|+..|          +..||+|.
T Consensus       276 ~~Gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~  308 (309)
T PLN02512        276 AQGVKTAHIIDGRVPHSLLLEILTDEGAGTMIT  308 (309)
T ss_pred             HcCCCEEEEecCCCCChHHHHHhcCCCCeeEEe
Confidence            88996 899987655          24688885

>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis

Probab=99.79  E-value=1.6e-18  Score=156.54  Aligned_cols=191  Identities=14%  Similarity=0.167  Sum_probs=123.5

Q ss_pred             cHHHHHHHHHHHHhhhcCCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEc------ccc-ceeecC--CCCCCcC
Q 023778           12 SYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMD------TRE-VLIVNP--TSSNQVD   82 (277)
Q Consensus        12 ~~~~i~~~~~~L~~~~~~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~------~~~-~~~~~~--~~~g~~~   82 (277)
                      +.++++.+.++|+++.++      .+.++.+|.--.++....+....|++....+      ... ..+.+.  ..++...
T Consensus        46 ~~~~i~~la~~i~~~~~~------~~vilV~GGG~~~r~~~~~~~~~g~~~~~~~~~~~aa~~ln~lv~~~~l~~~g~~~  119 (262)
T cd04255          46 GAEAVLPLVEEIVALRPE------HKLLILTGGGTRARHVYSIGLDLGMPTGVLAKLGASVSEQNAEMLATLLAKHGGSK  119 (262)
T ss_pred             cHHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            456677777777776642      2344445554455533333445666544432      111 001111  1122111


Q ss_pred             CCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCC------chHHHHHHHHHhCcceEEEeeccccccccCC
Q 023778           83 PDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG------SDFSAAIMGALLRAHQVTIWTDVDGVYSADP  156 (277)
Q Consensus        83 ~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrgg------sD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP  156 (277)
                      +. ......++++++  .+.|||++|+.+.+   ..++++|+|      +|++|+++|.+++|+++++||||||||++||
T Consensus       120 i~-~~~~~~l~~lL~--~g~vPVi~g~~~~~---~~~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGVy~~dP  193 (262)
T cd04255         120 VG-HGDLLQLPTFLK--AGRAPVISGMPPYG---LWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTADP  193 (262)
T ss_pred             cc-cccHHHHHHHHH--CCCeEEEeCCcCCC---eeeecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCeeECCCC
Confidence            10 011256888887  89999999986533   223444444      8999999999999999999999999999999


Q ss_pred             CCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhC--CCcEEEEeccCCC---------CCeeEEe
Q 023778          157 RKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRY--DIPIVIRNIFNLS---------VPGIMIC  215 (277)
Q Consensus       157 ~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~--~i~v~I~n~~~~~---------~~GT~I~  215 (277)
                      +.+|++++|++++++|+.++.. +..+|...+...+...  .++++|.|+..|+         ..||+|.
T Consensus       194 ~~~~~a~~i~~i~~~~~~~~~~-~~~~~~~~~~~~l~aa~~~~~v~I~~g~~~~~L~~~l~g~~~GT~i~  262 (262)
T cd04255         194 KKNKKAEFIPEISAAELLKKDL-DDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALRGEHVGTIIR  262 (262)
T ss_pred             CCCCCCeEccEeCHHHHHHHhc-CCCCCcHHHHHHHHHhCCCCcEEEEeCCCCCHHHHHHcCCCCceEeC
Confidence            9999999999999998877742 2334666666555533  2699999987663         4688773

The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).

>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]

Probab=99.78  E-value=9.8e-18  Score=153.90  Aligned_cols=194  Identities=15%  Similarity=0.264  Sum_probs=151.0

Q ss_pred             cccHHHHHHHHHHHHhhhc-C---------------------CCCh--hHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEE
Q 023778           10 ELSYEFIRSTYNFLSNVDS-G---------------------HATE--SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWM   65 (277)
Q Consensus        10 ~~~~~~i~~~~~~L~~~~~-~---------------------~~~~--~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l   65 (277)
                      +++.++++.+..++.++.+ |                     ..+.  ..+-.+.|.|+......+...|..+|+++   
T Consensus        24 ~l~~~~l~~l~~~ia~L~~~G~eVilVSSGAiaaG~~~Lg~~~rp~~l~~kQA~AAVGQ~~Lm~~y~~~f~~~g~~v---  100 (369)
T COG0263          24 GLDRSKLEELVRQVAALHKAGHEVVLVSSGAIAAGRTRLGLPKRPKTLAEKQAAAAVGQVRLMQLYEELFARYGIKV---  100 (369)
T ss_pred             CcCHHHHHHHHHHHHHHHhCCCEEEEEccchhhhChhhcCCCCCCcchHHHHHHHHhCHHHHHHHHHHHHHhcCCee---
Confidence            3667788888887777653 1                     1112  23555788999999999999999999985   


Q ss_pred             ccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCcee--ccCCCchHHHHHHHHHhCcceEE
Q 023778           66 DTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTT--LKRDGSDFSAAIMGALLRAHQVT  143 (277)
Q Consensus        66 ~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~--lgrggsD~~A~~lA~~l~A~~l~  143 (277)
                        .++.+ |.+.+.+ .-.|.+.+..+..+++  .|.|||+      |+|.-+.+  +-.|++|.+++++|...+||.++
T Consensus       101 --~QiLL-Tr~D~~~-r~ry~Nar~Tl~~Ll~--~gvVPII------NENDtva~~EikfGDND~LsA~VA~lv~ADlLv  168 (369)
T COG0263         101 --GQILL-TRDDFSD-RRRYLNARNTLSALLE--LGVVPII------NENDTVATEEIKFGDNDTLSALVAILVGADLLV  168 (369)
T ss_pred             --eEEEe-ehhhhhh-HHHHHHHHHHHHHHHH--CCceeee------cCCCceeeeeeeecCCchHHHHHHHHhCCCEEE
Confidence              45544 4333322 1235556677888887  8999997      56665544  44578899999999999999999


Q ss_pred             EeeccccccccCCCCCCCCeEEeeeCH--HHHHHHHh-----hcCCcchHH--HHHHHHhCCCcEEEEeccCCC------
Q 023778          144 IWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSY-----FGANVLHPR--TIIPVMRYDIPIVIRNIFNLS------  208 (277)
Q Consensus       144 i~tDV~Gvyt~dP~~~~~a~~i~~is~--~e~~~l~~-----~g~~v~~p~--a~~~a~~~~i~v~I~n~~~~~------  208 (277)
                      ++||+||+||+||+.+|+|++|++++-  .|...++.     +|.++|..+  |++.|.++|++++|.++..|+      
T Consensus       169 lLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~~g~~~~~i~~~~  248 (369)
T COG0263         169 LLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIASGSKPDVILDAL  248 (369)
T ss_pred             EEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEEEecCCCcchHHHHH
Confidence            999999999999999999999999874  57777754     567899885  889999999999999998764      


Q ss_pred             ---CCeeEEeCCC
Q 023778          209 ---VPGIMICRPP  218 (277)
Q Consensus       209 ---~~GT~I~~~~  218 (277)
                         ..||++.+..
T Consensus       249 ~~~~~GT~F~~~~  261 (369)
T COG0263         249 EGEAVGTLFEPQA  261 (369)
T ss_pred             hCCCCccEEecCC
Confidence               5799998655

>CHL00202 argB acetylglutamate kinase; Provisional

Probab=99.78  E-value=5.1e-18  Score=155.01  Aligned_cols=159  Identities=16%  Similarity=0.201  Sum_probs=126.5

Q ss_pred             hcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCC-----CCC----cCCCchHHHHHHHHHhhcCCCceEEecCcccc
Q 023778           42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTS-----SNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (277)
Q Consensus        42 ~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~-----~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~  112 (277)
                      .|+.  ...+++.|.+.|++++++++.+..+++...     ++.    .+++.    +.++.+++  .+.|||++|+ +.
T Consensus       101 ~g~l--n~~lv~~L~~~Gv~av~l~~~d~~~i~a~~~~~~d~~~~G~i~~v~~----~~i~~ll~--~g~iPVi~~~-~~  171 (284)
T CHL00202        101 AGKV--NKDLVGSINANGGKAVGLCGKDANLIVARASDKKDLGLVGEIQQVDP----QLIDMLLE--KNYIPVIASV-AA  171 (284)
T ss_pred             hhHH--HHHHHHHHHhCCCCeeeeeeccCCEEEEEeCCCcccccceeEEecCH----HHHHHHHH--CCCEEEECCC-cc
Confidence            4666  788899999999999999999865543221     121    23443    88899998  8899999995 88


Q ss_pred             CCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc--CCcchHH--H
Q 023778          113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR--T  188 (277)
Q Consensus       113 ~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p~--a  188 (277)
                      +..|++.+++   +|++|+.+|.+|+|++++|||||+|||+++ . .| .+++++++++|+.+++..|  ..+|.|+  +
T Consensus       172 ~~~g~~~ni~---~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~~-~-d~-~~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~a  245 (284)
T CHL00202        172 DHDGQTYNIN---ADVVAGEIAAKLNAEKLILLTDTPGILADI-N-DP-NSLISTLNIKEARNLASTGIISGGMIPKVNC  245 (284)
T ss_pred             CCCCcEEecC---HHHHHHHHHHHhCCCEEEEEeCChhhcCCC-C-CC-CCccccccHHHHHHHHhcCCCCCCHHHHHHH
Confidence            8889988874   899999999999999999999999999842 1 12 3799999999999998654  4789885  6


Q ss_pred             HHHHHhCCCc-EEEEeccCCC----------CCeeEEe
Q 023778          189 IIPVMRYDIP-IVIRNIFNLS----------VPGIMIC  215 (277)
Q Consensus       189 ~~~a~~~~i~-v~I~n~~~~~----------~~GT~I~  215 (277)
                      +..+.++|++ ++|.++..|+          ..||+|.
T Consensus       246 a~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~i~  283 (284)
T CHL00202        246 CIRALAQGVEAAHIIDGKEKHALLLEILTEKGIGSMLV  283 (284)
T ss_pred             HHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCCceEEe
Confidence            6778888997 8999887653          3688874

>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC)

Probab=99.78  E-value=2.1e-18  Score=155.41  Aligned_cols=157  Identities=14%  Similarity=0.189  Sum_probs=122.1

Q ss_pred             hHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCC-------------------CC-cCCCchHHHHHHH
Q 023778           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSS-------------------NQ-VDPDFSESEKRLE   93 (277)
Q Consensus        34 ~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~-------------------g~-~~~~~~~~~~~i~   93 (277)
                      +..+.+....+.++..+ ++.|.++|++++++++.+..+++....                   |. ..++    .+.++
T Consensus        65 ~~l~~~~~a~~~ln~~i-v~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~----~~~i~  139 (257)
T cd04251          65 ETLEVFVMVMGLINKKI-VARLHSLGVKAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVN----SDLIE  139 (257)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHhCCCCceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEc----HHHHH
Confidence            34444444446677775 559999999999999988644332211                   11 1233    38889


Q ss_pred             HHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHH
Q 023778           94 KWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEA  173 (277)
Q Consensus        94 ~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~  173 (277)
                      .+++  .+.|||++++ +.+.+|++.++   ++|++|+.+|.+|+|++++|||||+|||++       ++++++++++|+
T Consensus       140 ~ll~--~g~vpVi~~~-~~~~~G~~~~i---~~D~~A~~lA~~L~A~~li~~tdv~Gv~~~-------~~~i~~i~~~e~  206 (257)
T cd04251         140 ALLD--AGYLPVVSPV-AYSEEGEPLNV---DGDRAAAAIAAALKAERLILLTDVEGLYLD-------GRVIERITVSDA  206 (257)
T ss_pred             HHHh--CCCeEEEeCc-EECCCCcEEec---CHHHHHHHHHHHcCCCEEEEEeCChhheeC-------CcccCccCHHHH
Confidence            9998  8899999886 66788998887   489999999999999999999999999963       789999999999


Q ss_pred             HHHHhhcCCcchHH--HHHHHHhCCCc-EEEEeccCCC
Q 023778          174 WEMSYFGANVLHPR--TIIPVMRYDIP-IVIRNIFNLS  208 (277)
Q Consensus       174 ~~l~~~g~~v~~p~--a~~~a~~~~i~-v~I~n~~~~~  208 (277)
                      .++...-..+|.|+  ++..+.++|++ ++|.++..|+
T Consensus       207 ~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~~~~  244 (257)
T cd04251         207 ESLLEKAGGGMKRKLLAAAEAVEGGVREVVIGDARADS  244 (257)
T ss_pred             HHHHhhCCCchHHHHHHHHHHHHcCCCEEEEecCCCcc
Confidence            99976556788884  67778888885 8898887664

This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).

>PTZ00489 glutamate 5-kinase; Provisional

Probab=99.78  E-value=1.5e-17  Score=150.13  Aligned_cols=169  Identities=18%  Similarity=0.240  Sum_probs=125.2

Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCC
Q 023778           36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD  115 (277)
Q Consensus        36 ~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~  115 (277)
                      +....+.|......++.+.|.++|+.+..+     .++. ..+.. ...+....+.++++++  .+.|||+.|. .....
T Consensus        72 ~qa~aaiGq~~L~~~y~~~f~~~~~~~aqi-----Llt~-~d~~~-~~~~~n~~~~l~~lL~--~g~VPIinen-d~~~~  141 (264)
T PTZ00489         72 KQALASMGQPLLMHMYYTELQKHGILCAQM-----LLAA-YDLDS-RKRTINAHNTIEVLIS--HKVIPIINEN-DATAL  141 (264)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHhCCCeEEEe-----eeec-ccccc-chhhHHHHHHHHHHHH--CCCEEEECCC-CCccc
Confidence            344556777777888999999999987433     2222 22211 2234566788999998  8999999883 11112


Q ss_pred             CCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeE---EeeeCHHHHHHHH----hhcCCcchHH-
Q 023778          116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI---LRTLSYQEAWEMS----YFGANVLHPR-  187 (277)
Q Consensus       116 G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~---i~~is~~e~~~l~----~~g~~v~~p~-  187 (277)
                      .++. +  |++|.+|+++|..++|+.++|+|||||||++||+.+|+|++   +++++.++.....    ..+.++|.++ 
T Consensus       142 ~e~~-~--gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~~~~~~~~tGGM~~Kl  218 (264)
T PTZ00489        142 HELV-F--GDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNNRFATGGIVTKL  218 (264)
T ss_pred             ceeE-e--CChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhcCcCCCcccCChHHHH
Confidence            2332 2  56899999999999999999999999999999999999997   7788887664432    2456788884 


Q ss_pred             -HHHHHHhCCCcEEEEeccCCC-----------CCeeEEeCC
Q 023778          188 -TIIPVMRYDIPIVIRNIFNLS-----------VPGIMICRP  217 (277)
Q Consensus       188 -a~~~a~~~~i~v~I~n~~~~~-----------~~GT~I~~~  217 (277)
                       ++..+.++|++++|.|+..|+           ..||+|.+.
T Consensus       219 ~aa~~a~~~Gi~v~I~~g~~~~~i~~~l~g~~~~~GT~~~~~  260 (264)
T PTZ00489        219 QAAQFLLERGGKMYLSSGFHLEKARDFLIGGSHEIGTLFYPR  260 (264)
T ss_pred             HHHHHHHHCCCCEEEEeCCCchHHHHHHcCCCCCCceEEeec
Confidence             788899999999999987552           269999764

>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis

Probab=99.77  E-value=6.7e-18  Score=154.13  Aligned_cols=168  Identities=18%  Similarity=0.225  Sum_probs=127.0

Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecC-ccccCC
Q 023778           36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATG-FIASTP  114 (277)
Q Consensus        36 ~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G-~i~~~~  114 (277)
                      +-.+.+.|+.....++.+.|.++|+.+     .++++ +.+.|.+.+. +....+.++.+++  .+.|||++| +...+.
T Consensus        94 ~qa~aa~gq~~L~~~y~~~f~~~~~~~-----~q~ll-t~~d~~~~~~-~~~~~~~l~~lL~--~g~iPVi~~nD~v~~~  164 (284)
T cd04256          94 GRACAAVGQSGLMALYEAMFTQYGITV-----AQVLV-TKPDFYDEQT-RRNLNGTLEELLR--LNIIPIINTNDAVSPP  164 (284)
T ss_pred             HHHHHHcccHHHHHHHHHHHHHcCCcH-----HHeee-eccccccHHH-HHHHHHHHHHHHH--CCCEEEEeCCCccccc
Confidence            355778999999999999999999885     56644 5444543221 2344577788887  889999986 333221


Q ss_pred             -----CCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHh-----hcCCcc
Q 023778          115 -----DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY-----FGANVL  184 (277)
Q Consensus       115 -----~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~-----~g~~v~  184 (277)
                           +|+.. ...+++|++|+++|..++|+.++++|||||||++||+ .|++++|++++..+..++..     .|..+|
T Consensus       165 ~~~~~~~~~~-~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gtGGM  242 (284)
T cd04256         165 PEPDEDLQGV-ISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTGGM  242 (284)
T ss_pred             cccccccccc-ccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCC-CCCCeEcccccHhHHHHhhcccccCcccCCc
Confidence                 22221 1124689999999999999999999999999999997 69999999999887766632     346899


Q ss_pred             hHH--HHHHHHhCCCcEEEEeccCC---------CCCeeEE
Q 023778          185 HPR--TIIPVMRYDIPIVIRNIFNL---------SVPGIMI  214 (277)
Q Consensus       185 ~p~--a~~~a~~~~i~v~I~n~~~~---------~~~GT~I  214 (277)
                      .|+  ++..+.++|++++|.|+..|         +..||+|
T Consensus       243 ~~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~~~l~G~~~GT~~  283 (284)
T cd04256         243 EAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFF  283 (284)
T ss_pred             HHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHcCCCCCEEe
Confidence            985  88889999999999998765         3568876

G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.

>PLN02418 delta-1-pyrroline-5-carboxylate synthase

Probab=99.77  E-value=5.3e-18  Score=172.04  Aligned_cols=171  Identities=16%  Similarity=0.221  Sum_probs=127.7

Q ss_pred             HHH--HHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCc-cc
Q 023778           35 FTD--FVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGF-IA  111 (277)
Q Consensus        35 ~~~--~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~-i~  111 (277)
                      ..+  .++|+||.++++++..+|++.|+++     .+++ .+++.|++... +....+.++.+++  .+.|||+.|. ..
T Consensus        90 ~~~~qa~aa~Gq~~l~~~~~~~f~~~g~~~-----~qil-lT~~~~~~~~~-~~~~~~~l~~ll~--~g~iPVv~~nd~v  160 (718)
T PLN02418         90 ELDGKACAAVGQSELMALYDTLFSQLDVTA-----SQLL-VTDSDFRDPDF-RKQLSETVESLLD--LRVIPIFNENDAV  160 (718)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHcCCeE-----EEEE-ecHhHhcchhH-hHhHHHHHHHHHH--CCCEEEEcCCCCc
Confidence            445  7899999999999999999999954     4553 45444543222 2345678888887  7899999873 22


Q ss_pred             cCCCCC----ceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHH-HHh-----hcC
Q 023778          112 STPDNI----PTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWE-MSY-----FGA  181 (277)
Q Consensus       112 ~~~~G~----~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~-l~~-----~g~  181 (277)
                      .+..+.    ...+  +++|++|+++|.+++|+.++|||||||||++||+ .+++++|++++..+... +..     .+.
T Consensus       161 ~~~~~~~~~~~~~~--~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~t  237 (718)
T PLN02418        161 STRRAPYEDSSGIF--WDNDSLAALLALELKADLLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGR  237 (718)
T ss_pred             cccccccccccCee--cCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCC-CCCceEcceecccchhhhhhcccccccCC
Confidence            222110    0011  3689999999999999999999999999999998 58999999998655432 221     246


Q ss_pred             CcchH--HHHHHHHhCCCcEEEEeccCCC---------CCeeEEeCC
Q 023778          182 NVLHP--RTIIPVMRYDIPIVIRNIFNLS---------VPGIMICRP  217 (277)
Q Consensus       182 ~v~~p--~a~~~a~~~~i~v~I~n~~~~~---------~~GT~I~~~  217 (277)
                      ++|.|  .++..+.++|++++|.|+..|+         ..||+|.+.
T Consensus       238 GGM~~Kl~Aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  284 (718)
T PLN02418        238 GGMTAKVKAAVNAASAGIPVVITSGYALDNIRKVLRGERVGTLFHQD  284 (718)
T ss_pred             CCcHHHHHHHHHHHHCCCcEEEeCCCCcchHHHHhcCCCCceEeccc
Confidence            79999  5788899999999999987653         579999763

>COG1608 Predicted archaeal kinase [General function prediction only]

Probab=99.69  E-value=1.6e-16  Score=139.02  Aligned_cols=154  Identities=18%  Similarity=0.150  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHH-HHHHHHHhhcCCCceEEecCccccCCC-CCceeccCCC
Q 023778           48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES-EKRLEKWFSQSPSNTIIATGFIASTPD-NIPTTLKRDG  125 (277)
Q Consensus        48 ~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~-~~~i~~~l~~~~~~VpVv~G~i~~~~~-G~~~~lgrgg  125 (277)
                      +..+++.|.+.|++++.+.|..+. +.+++     +.+  + .+.++.+++  .+.|||++|++..+.+ |.....|   
T Consensus        83 ~~~V~~~l~~~Gv~av~~~P~s~~-~~~gr-----~~~--~~l~~i~~~l~--~gfvPvl~GDVv~d~~~g~~IiSG---  149 (252)
T COG1608          83 NSIVVDALLDAGVRAVSVVPISFS-TFNGR-----ILY--TYLEAIKDALE--KGFVPVLYGDVVPDDDNGYEIISG---  149 (252)
T ss_pred             HHHHHHHHHhcCCccccccCccee-ecCCc-----eee--chHHHHHHHHH--cCCEeeeecceEEcCCCceEEEec---
Confidence            567889999999999988888875 23322     222  2 378888898  8999999999999977 5545444   


Q ss_pred             chHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHh--hcCCcchH--HHHHHHHhCCCcEEE
Q 023778          126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY--FGANVLHP--RTIIPVMRYDIPIVI  201 (277)
Q Consensus       126 sD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~--~g~~v~~p--~a~~~a~~~~i~v~I  201 (277)
                       |..+..||+.|++++++|+|||||||+.||.+.|+++.+++++..++..=+.  -=..+|--  +++..+.+.+.++++
T Consensus       150 -DdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi  228 (252)
T COG1608         150 -DDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALLEIARYGKEVYI  228 (252)
T ss_pred             -cHHHHHHHHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhhhcCcCcccchhhHHHHHHHHHHHHhcCceEEE
Confidence             9999999999999999999999999999999999999998876653322211  00245544  355556667778999


Q ss_pred             EeccCC---------CCCeeEEe
Q 023778          202 RNIFNL---------SVPGIMIC  215 (277)
Q Consensus       202 ~n~~~~---------~~~GT~I~  215 (277)
                      +|+..|         +.+||+|.
T Consensus       229 ~ng~~~~ni~~~l~G~~vGT~I~  251 (252)
T COG1608         229 FNGNKPENIYRALRGENVGTRID  251 (252)
T ss_pred             ECCCCHHHHHHHhcCCCCceEec
Confidence            998755         46899985

>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]

Probab=99.68  E-value=9.5e-16  Score=137.39  Aligned_cols=159  Identities=18%  Similarity=0.204  Sum_probs=130.3

Q ss_pred             hhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCC--------CCC----cCCCchHHHHHHHHHhhcCCCceEEecC
Q 023778           41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTS--------SNQ----VDPDFSESEKRLEKWFSQSPSNTIIATG  108 (277)
Q Consensus        41 s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~--------~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G  108 (277)
                      .+|+.  .+-+++.|.+.|.+++.++..+-.+++..+        +|.    ..+|    .+.++.+++  ++.|||+++
T Consensus        79 l~G~v--Nk~iva~l~~~g~~avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn----~~~i~~ll~--~~~IpViap  150 (265)
T COG0548          79 LGGTV--NKEIVARLSKHGGQAVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVN----PELIERLLD--NGAIPVIAP  150 (265)
T ss_pred             HHHHH--HHHHHHHHHHhCCcceeeeecCCCEEEEEEcccccccccceeeeEEEEC----HHHHHHHHh--CCCceEEec
Confidence            34666  788999999999999999998854443222        221    1233    378888888  889999999


Q ss_pred             ccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc--CCcchH
Q 023778          109 FIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHP  186 (277)
Q Consensus       109 ~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p  186 (277)
                      . +.+.+|++.++.   +|++|+.+|.+|+|++++++|||+|||+..|+  +  +++++++.+|+.++...|  ..+|.|
T Consensus       151 i-a~~~~G~~~Nvn---aD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~--~--s~i~~~~~~~~~~li~~~~i~~GMi~  222 (265)
T COG0548         151 I-AVDEDGETLNVN---ADTAAGALAAALKAEKLILLTDVPGVLDDKGD--P--SLISELDAEEAEELIEQGIITGGMIP  222 (265)
T ss_pred             c-eECCCCcEEeeC---HHHHHHHHHHHcCCCeEEEEeCCcccccCCCC--c--eeeccCCHHHHHHHHhcCCccCccHH
Confidence            5 999999999984   99999999999999999999999999988754  2  799999999999999877  578999


Q ss_pred             H--HHHHHHhCCCc-EEEEeccCC----------CCCeeEEe
Q 023778          187 R--TIIPVMRYDIP-IVIRNIFNL----------SVPGIMIC  215 (277)
Q Consensus       187 ~--a~~~a~~~~i~-v~I~n~~~~----------~~~GT~I~  215 (277)
                      +  ++..|.+.|++ ++|.|+..|          +..||.|.
T Consensus       223 Kv~~a~~A~~~Gv~~v~ii~g~~~~~ll~eLFt~~giGT~i~  264 (265)
T COG0548         223 KVEAALEALESGVRRVHIISGRVPHSLLLELFTRDGIGTMIV  264 (265)
T ss_pred             HHHHHHHHHHhCCCeEEEecCCCcchHHHHHhcCCCcceEec
Confidence            5  77889999995 999998755          35688875

>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase

Probab=99.64  E-value=5.6e-15  Score=150.14  Aligned_cols=164  Identities=12%  Similarity=0.189  Sum_probs=119.0

Q ss_pred             HHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCC
Q 023778           38 FVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNI  117 (277)
Q Consensus        38 ~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~  117 (277)
                      .+.+.|+.....++...|...++.+     .++++ +.+.|.+... +....+.++.+++  .+.|||+.+      ++.
T Consensus        87 a~aa~gq~~L~~~y~~~f~~~~i~~-----aQ~Ll-t~~d~~~~~~-~~~~~~~l~~lL~--~g~iPVin~------nD~  151 (715)
T TIGR01092        87 ACAAVGQSGLMALYETMFTQLDITA-----AQILV-TDLDFRDEQF-RRQLNETVHELLR--MNVVPVVNE------NDA  151 (715)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCee-----EEEEe-chhhcccHHH-HHHHHHHHHHHHH--CCCEEEEcC------CCc
Confidence            3456666666666777777777764     55544 4444432211 3344678888887  889999975      122


Q ss_pred             ceeccC---------CCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHH-HHHh-----hcCC
Q 023778          118 PTTLKR---------DGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAW-EMSY-----FGAN  182 (277)
Q Consensus       118 ~~~lgr---------ggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~-~l~~-----~g~~  182 (277)
                      +++.++         +++|++|+++|.+++|+.++++|||||||++||+ .|++++|++++..+.. ++..     .+.+
T Consensus       152 V~~~~~~~~~~~g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~~~tG  230 (715)
T TIGR01092       152 VSTRAAPYSDSQGIFWDNDSLAALLALELKADLLILLSDVEGLYDGPPS-DDDSKLIDTFYKEKHQGEITFGTKSRLGRG  230 (715)
T ss_pred             ccccccccccccceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCC-CCCCeEeeeecccchhhhhccCcccccCCC
Confidence            333332         3579999999999999999999999999999996 6999999999875444 3322     3467


Q ss_pred             cchH--HHHHHHHhCCCcEEEEeccCC---------CCCeeEEeCC
Q 023778          183 VLHP--RTIIPVMRYDIPIVIRNIFNL---------SVPGIMICRP  217 (277)
Q Consensus       183 v~~p--~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~~~  217 (277)
                      +|.+  +++..+.++|++++|.|+..|         +..||+|.+.
T Consensus       231 GM~~Kl~aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~~~~~  276 (715)
T TIGR01092       231 GMTAKVKAAVWAAYGGTPVIIASGTAPKNITKVVEGKKVGTLFHED  276 (715)
T ss_pred             CchHHHHHHHHHHHCCCeEEEeCCCCcchHHHHhcCCCCceEeccc
Confidence            8988  578889999999999998765         3469999664

This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.

>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals

Probab=99.57  E-value=3.9e-14  Score=128.31  Aligned_cols=141  Identities=14%  Similarity=0.152  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHCCCCeEEEccccceeec----C-CCCCC-cCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceec
Q 023778           48 AQMLAAVVRKNGIDCKWMDTREVLIVN----P-TSSNQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTL  121 (277)
Q Consensus        48 ~~ll~~~L~~~Gi~a~~l~~~~~~~~~----~-~~~g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~l  121 (277)
                      ...+++.|++.|++++++++...++..    + +.-|. .++|.    +.++.+++  .|.|||+++ ++.+.+|++.++
T Consensus       100 n~~Lv~~L~~~G~~A~gl~g~~~~i~a~~~~d~g~vG~V~~Vd~----~~I~~lL~--~g~IPVisp-lg~~~~G~~~Ni  172 (271)
T cd04236         100 CKTLVEALQANSAAAHPLFSGESVLQAEEPEPGASKGPSVSVDT----ELLQWCLG--SGHIPLVCP-IGETSSGRSVSL  172 (271)
T ss_pred             HHHHHHHHHhCCCCeeeecCccceEEEEEcccCCccceEEEECH----HHHHHHHh--CCCeEEECC-ceECCCCCEEEE
Confidence            667899999999999999987533321    1 11222 24554    88999998  899999999 589999999998


Q ss_pred             cCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCH-HHHHHHHhhc--CCcc---hH--HHHHHHH
Q 023778          122 KRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY-QEAWEMSYFG--ANVL---HP--RTIIPVM  193 (277)
Q Consensus       122 grggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~-~e~~~l~~~g--~~v~---~p--~a~~~a~  193 (277)
                      +   +|..|+.+|.+|+|++++|+||++|||+.      +.++|++++. +|+.+|...|  ..+|   -|  +++..++
T Consensus       173 N---aD~~A~~lA~aL~A~KLIfltd~~GV~~~------~g~lI~~l~~~~e~~~li~~g~i~gGm~~ki~ki~~~l~~l  243 (271)
T cd04236         173 D---SSEVTTAIAKALQPIKVIFLNRSGGLRDQ------KHKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNAL  243 (271)
T ss_pred             C---HHHHHHHHHHHcCCCEEEEEeCCcceECC------CCCCccccCcHHHHHHHHhCCEEcCCeeechHHHHHHHHhc
Confidence            5   89999999999999999999999999963      2579999995 9999998876  4677   56  3677788


Q ss_pred             hCCCcEEEEec
Q 023778          194 RYDIPIVIRNI  204 (277)
Q Consensus       194 ~~~i~v~I~n~  204 (277)
                      ..++.++|.+.
T Consensus       244 ~~g~sv~I~~~  254 (271)
T cd04236         244 PSMSSAVITSA  254 (271)
T ss_pred             ccCCeEEEeCh
Confidence            89999989873

Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).

>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP

Probab=99.56  E-value=1e-13  Score=127.33  Aligned_cols=120  Identities=19%  Similarity=0.218  Sum_probs=90.9

Q ss_pred             HHHHHHhhcCCCceEEecCc----cccCCCCCceec-cCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeE
Q 023778           90 KRLEKWFSQSPSNTIIATGF----IASTPDNIPTTL-KRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI  164 (277)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~----i~~~~~G~~~~l-grggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~  164 (277)
                      +.++.+++  .+.|||++|.    +..+ +|...+. ...++|++|+++|..++|+.++++|||||||+.+|  .|++++
T Consensus       172 ~~I~~Ll~--~g~IpI~~GggGiPv~~~-~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~~--~pda~~  246 (308)
T cd04235         172 EAIKTLVD--NGVIVIAAGGGGIPVVRE-GGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINFG--KPNQKA  246 (308)
T ss_pred             HHHHHHHH--CCCEEEEECCCccCEEEc-CCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCCC--CCCCeE
Confidence            55777787  8999999986    2322 2332221 12356999999999999999999999999999654  489999


Q ss_pred             EeeeCHHHHHHHHh---hcCCcchHH---HHHHHHhCCCcEEEEeccCC-----CCCeeEE
Q 023778          165 LRTLSYQEAWEMSY---FGANVLHPR---TIIPVMRYDIPIVIRNIFNL-----SVPGIMI  214 (277)
Q Consensus       165 i~~is~~e~~~l~~---~g~~v~~p~---a~~~a~~~~i~v~I~n~~~~-----~~~GT~I  214 (277)
                      |++++++|+.++..   ++.++|.|+   |++.+.+.+.+++|.+..+.     ...||+|
T Consensus       247 i~~Is~~e~~~l~~~g~~~tGGM~pKv~aA~~~a~~gg~~v~I~~~~~i~~aL~G~~GT~I  307 (308)
T cd04235         247 LEQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAIITSLENAEAALEGKAGTVI  307 (308)
T ss_pred             cCCcCHHHHHHHHhcCccccCCcHHHHHHHHHHHHhCCCeEEECCHHHHHHHHCCCCCeEE
Confidence            99999999999875   456799997   66777777788899774321     1268887

Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).

>PRK12353 putative amino acid kinase; Reviewed

Probab=99.56  E-value=1.2e-13  Score=127.94  Aligned_cols=123  Identities=20%  Similarity=0.215  Sum_probs=92.7

Q ss_pred             HHHHHHHhhcCCCceEEecCc--ccc-CCCCCceecc-CCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeE
Q 023778           89 EKRLEKWFSQSPSNTIIATGF--IAS-TPDNIPTTLK-RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI  164 (277)
Q Consensus        89 ~~~i~~~l~~~~~~VpVv~G~--i~~-~~~G~~~~lg-rggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~  164 (277)
                      .+.++.+++  .+.|||++|+  ++. ++++.+.+.. .+++|.+|+++|.+|+|++++++|||||||++||  .|++++
T Consensus       175 ~~~i~~lL~--~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy~~~~--~~~a~~  250 (314)
T PRK12353        175 IEAIKTLVD--AGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVYINFG--KPNQKK  250 (314)
T ss_pred             HHHHHHHHH--CCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCccccCCCC--CCCCeE
Confidence            477888888  8999999987  222 2334332211 3568999999999999999999999999999766  389999


Q ss_pred             EeeeCHHHHHHHHh---hcCCcchHH--HH-HHH-HhCCCcEEEEecc------CCCCCeeEEeC
Q 023778          165 LRTLSYQEAWEMSY---FGANVLHPR--TI-IPV-MRYDIPIVIRNIF------NLSVPGIMICR  216 (277)
Q Consensus       165 i~~is~~e~~~l~~---~g~~v~~p~--a~-~~a-~~~~i~v~I~n~~------~~~~~GT~I~~  216 (277)
                      |++++++|+.++..   .+.++|.|+  ++ +.+ .+.+++++|.|..      +.+ .||+|.+
T Consensus       251 i~~i~~~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~~~~i~~~l~g~-~GT~i~~  314 (314)
T PRK12353        251 LDEVTVSEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITSLEKAKEALEGK-AGTVIVK  314 (314)
T ss_pred             CcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECCchHHHHHhCCC-CCeEecC
Confidence            99999999988864   345778885  44 445 4778999998743      223 7998853

>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP)

Probab=99.55  E-value=1.3e-13  Score=123.59  Aligned_cols=145  Identities=12%  Similarity=0.119  Sum_probs=107.6

Q ss_pred             hhcHHHHHHHHHHHHHHCCCCeEEEccccceeec---CCCCC---C-cCCCchHHHHHHHHHhhcCCCceEEecCccccC
Q 023778           41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVN---PTSSN---Q-VDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (277)
Q Consensus        41 s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~---~~~~g---~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~  113 (277)
                      +.++.  ...+++.|.++|++++++++..+ ...   ...+|   . .++|.    +.++++++  .+.|||++|+ +.+
T Consensus        72 al~~v--n~~iv~~l~~~g~~a~~l~~~~~-~a~~~~~~d~g~~G~v~~i~~----~~i~~~L~--~g~IPVi~p~-~~~  141 (248)
T cd04252          72 VFLEE--NLKLVEALERNGARARPITSGVF-EAEYLDKDKYGLVGKITGVNK----APIEAAIR--AGYLPILTSL-AET  141 (248)
T ss_pred             HHHHH--HHHHHHHHHhCCCCcccccCceE-EEEECcCccCCccCceeeECH----HHHHHHHH--CCCeEEECCc-eEC
Confidence            45554  56677789999999999987633 221   11122   2 23444    88999998  8999999995 778


Q ss_pred             CCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCH-HHHHHHHhhc--CCcchHH--H
Q 023778          114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY-QEAWEMSYFG--ANVLHPR--T  188 (277)
Q Consensus       114 ~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~-~e~~~l~~~g--~~v~~p~--a  188 (277)
                      ..|++.+++   +|..|+.+|.+|+|++++|+|||+|||+.      +.+++++++. +++.++...+  ..+|.|+  +
T Consensus       142 ~~g~~~nvn---aD~~A~~lA~aL~a~kli~ltdv~GV~~~------~g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~  212 (248)
T cd04252         142 PSGQLLNVN---ADVAAGELARVLEPLKIVFLNETGGLLDG------TGKKISAINLDEEYDDLMKQPWVKYGTKLKIKE  212 (248)
T ss_pred             CCCCEEEEC---HHHHHHHHHHHcCCCeEEEEECCcccCCC------CCCcccccCHHHHHHHHHHcCCcCCchHHHHHH
Confidence            889888874   89999999999999999999999999964      3579999986 4777777654  3678885  4


Q ss_pred             HHHHHhC--CC-cEEEEec
Q 023778          189 IIPVMRY--DI-PIVIRNI  204 (277)
Q Consensus       189 ~~~a~~~--~i-~v~I~n~  204 (277)
                      +..+.+.  ++ .++|.+.
T Consensus       213 ~~~~~~~~~~~~~v~i~~~  231 (248)
T cd04252         213 IKELLDTLPRSSSVSITSP  231 (248)
T ss_pred             HHHHHHhCCCceEEEEECC
Confidence            4455555  33 4777653

The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th

>TIGR00746 arcC carbamate kinase

Probab=99.51  E-value=5.7e-13  Score=122.89  Aligned_cols=121  Identities=17%  Similarity=0.194  Sum_probs=89.1

Q ss_pred             HHHHHHhhcCCCceEEecCc--ccc-CCCCCceec-cCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEE
Q 023778           90 KRLEKWFSQSPSNTIIATGF--IAS-TPDNIPTTL-KRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (277)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~--i~~-~~~G~~~~l-grggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i  165 (277)
                      +.++.+++  .|.++|.+|.  ++. +++|.+... -.+++|.+|+++|.+|+||.++++|||||||++ | ..|+++++
T Consensus       173 ~~I~~LL~--~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~-~-~~p~a~~i  248 (310)
T TIGR00746       173 ETIKTLVE--NGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYIN-Y-GKPDEKAL  248 (310)
T ss_pred             HHHHHHHH--CCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCC-C-CCCCCcCC
Confidence            57788887  7777666653  222 344443211 024689999999999999999999999999986 4 35889999


Q ss_pred             eeeCHHHHHHHHh---hcCCcchHH--H-HHHHHhCCCcEEEEecc------CCCCCeeEEe
Q 023778          166 RTLSYQEAWEMSY---FGANVLHPR--T-IIPVMRYDIPIVIRNIF------NLSVPGIMIC  215 (277)
Q Consensus       166 ~~is~~e~~~l~~---~g~~v~~p~--a-~~~a~~~~i~v~I~n~~------~~~~~GT~I~  215 (277)
                      ++++++|+.++..   ++.++|.|+  + ++.+.+.+.+++|.|..      +.+ .||+|.
T Consensus       249 ~~it~~e~~~~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~~~~i~~~l~G~-~GT~I~  309 (310)
T TIGR00746       249 REVTVEELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITSLENAVEALEGK-AGTRVT  309 (310)
T ss_pred             cCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEechHHHHHHHCCC-CCcEEe
Confidence            9999999999874   456788884  3 46666667889998743      234 799885

The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.

>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts

Probab=99.50  E-value=3.5e-13  Score=122.95  Aligned_cols=147  Identities=16%  Similarity=0.194  Sum_probs=110.7

Q ss_pred             hcHHHHHHHHHHHHHHCCCCeEEEccccceee-----cCC--------CCC---C-cCCCchHHHHHHHHHhhcCCCceE
Q 023778           42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIV-----NPT--------SSN---Q-VDPDFSESEKRLEKWFSQSPSNTI  104 (277)
Q Consensus        42 ~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~-----~~~--------~~g---~-~~~~~~~~~~~i~~~l~~~~~~Vp  104 (277)
                      .|+.  ...+.+.|++ |++++++.+..+...     ...        .++   . ..++    .+.++.+++  .+.||
T Consensus        94 ~g~v--~~~l~~~l~~-~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~----~~~i~~lL~--~g~ip  164 (280)
T cd04237          94 AGAV--RLEIEALLSM-GLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRID----ADAIRRQLD--QGSIV  164 (280)
T ss_pred             HHHH--HHHHHHHHHh-hccccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEc----HHHHHHHHH--CCCEE
Confidence            4665  6667777755 888876654322111     110        111   1 1233    388899998  88999


Q ss_pred             EecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc---C
Q 023778          105 IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG---A  181 (277)
Q Consensus       105 Vv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g---~  181 (277)
                      |+++ ++.+.+|++.+++   +|..|+.||.+|+|++++|+|||||||++      +.+++++++.+|+.++...+   .
T Consensus       165 v~~~-~g~~~~g~~lnvn---aD~~A~~LA~~L~a~klv~ltdv~GV~~~------~~~~i~~i~~~e~~~l~~~~~~~~  234 (280)
T cd04237         165 LLSP-LGYSPTGEVFNLS---MEDVATAVAIALKADKLIFLTDGPGLLDD------DGELIRELTAQEAEALLETGALLT  234 (280)
T ss_pred             EECC-ceECCCCCEEeeC---HHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCccccCCHHHHHHHHHcCCCCC
Confidence            9998 4888889988874   79999999999999999999999999963      36899999999999998755   3


Q ss_pred             CcchHH--HHHHHHhCCC-cEEEEeccCC
Q 023778          182 NVLHPR--TIIPVMRYDI-PIVIRNIFNL  207 (277)
Q Consensus       182 ~v~~p~--a~~~a~~~~i-~v~I~n~~~~  207 (277)
                      .+|.|+  ++..+.++|+ +++|.++..|
T Consensus       235 ggM~~Kv~~a~~a~~~Gv~~v~I~~~~~~  263 (280)
T cd04237         235 NDTARLLQAAIEACRGGVPRVHLISYAED  263 (280)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence            789996  6677778899 5999998665

Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).

>PRK05279 N-acetylglutamate synthase; Validated

Probab=99.48  E-value=6.5e-13  Score=128.31  Aligned_cols=153  Identities=15%  Similarity=0.163  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHCCCCeEEEccccceeecCC-------------CCCC----cCCCchHHHHHHHHHhhcCCCceEEecCcc
Q 023778           48 AQMLAAVVRKNGIDCKWMDTREVLIVNPT-------------SSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (277)
Q Consensus        48 ~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~-------------~~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i  110 (277)
                      ...+.+.|. .|++++++.+..+...+..             .+|.    ..++    .+.++.+++  .|.|||+++ +
T Consensus       105 ~~~l~~~l~-~g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~v~----~~~i~~ll~--~g~ipV~~~-i  176 (441)
T PRK05279        105 RLDIEARLS-MGLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRRID----AEAIRRQLD--SGAIVLLSP-L  176 (441)
T ss_pred             HHHHHHHHh-ccCCCCcccCCcceEeeccEEEEEECCCCCCccccceeeEEEEe----HHHHHHHHH--CCCeEEECC-c
Confidence            566777774 5999888766544332210             1221    1223    378888998  889999966 5


Q ss_pred             ccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHh---hc--CCcch
Q 023778          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY---FG--ANVLH  185 (277)
Q Consensus       111 ~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~---~g--~~v~~  185 (277)
                      +.+.+|++.+++   +|.+|+.||.+|+|++++|+|||||||+.      ++++|++++.+|+.++..   .|  ..+|.
T Consensus       177 ~~~~~g~~~ni~---~D~~a~~lA~~l~a~~lv~ltdv~GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~~~ggM~  247 (441)
T PRK05279        177 GYSPTGESFNLT---MEEVATQVAIALKADKLIFFTESQGVLDE------DGELIRELSPNEAQALLEALEDGDYNSGTA  247 (441)
T ss_pred             eECCCCCEEEEC---HHHHHHHHHHHcCCCEEEEEECCCCccCC------CCchhhhCCHHHHHHHHhhhhcCCCCccHH
Confidence            888889988774   89999999999999999999999999953      478999999999988875   33  47898


Q ss_pred             HH--HHHHHHhCCC-cEEEEeccCC----------CCCeeEEeCC
Q 023778          186 PR--TIIPVMRYDI-PIVIRNIFNL----------SVPGIMICRP  217 (277)
Q Consensus       186 p~--a~~~a~~~~i-~v~I~n~~~~----------~~~GT~I~~~  217 (277)
                      |+  ++..+.++|+ +++|.++..|          +..||+|...
T Consensus       248 ~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~  292 (441)
T PRK05279        248 RFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVME  292 (441)
T ss_pred             HHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEecC
Confidence            95  5566677899 5999998655          3479999875

>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase

Probab=99.44  E-value=1.7e-12  Score=124.97  Aligned_cols=117  Identities=13%  Similarity=0.122  Sum_probs=96.9

Q ss_pred             HHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeC
Q 023778           90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS  169 (277)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is  169 (277)
                      +.++.+++  .+.|||+++. +.+.+|++.+++   +|..|+.||.+|+|++++|+|||+|||++      +.++|++|+
T Consensus       151 ~~l~~ll~--~g~ipvi~pi-~~~~~g~~~nvn---aD~~A~~lA~al~a~kli~ltdv~Gv~~~------~g~~i~~i~  218 (429)
T TIGR01890       151 EGIRRQLD--AGSIVLLSPL-GHSPTGETFNLD---MEDVATSVAISLKADKLIYFTLSPGISDP------DGTLAAELS  218 (429)
T ss_pred             HHHHHHHH--CCCeEEECCc-ccCCCCCEEEeC---HHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCCcccCC
Confidence            88999998  8899999984 888899999885   89999999999999999999999999963      367999999


Q ss_pred             HHHHHHHHhhcCCc-chHH--HHHHHHhCCCc-EEEEeccCC----------CCCeeEEeCCC
Q 023778          170 YQEAWEMSYFGANV-LHPR--TIIPVMRYDIP-IVIRNIFNL----------SVPGIMICRPP  218 (277)
Q Consensus       170 ~~e~~~l~~~g~~v-~~p~--a~~~a~~~~i~-v~I~n~~~~----------~~~GT~I~~~~  218 (277)
                      .+|+.++....... |.|+  ++..|.+.|++ ++|.++..|          +..||+|....
T Consensus       219 ~~~~~~l~~~~~~~~~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~~d~  281 (429)
T TIGR01890       219 PQEVESLAERLGSETTRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGIGTSISKEA  281 (429)
T ss_pred             HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCCcceEeccc
Confidence            99999887543333 4775  66777888975 999998654          35799998754

This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.

>PRK12686 carbamate kinase; Reviewed

Probab=99.43  E-value=1.1e-12  Score=120.63  Aligned_cols=123  Identities=19%  Similarity=0.243  Sum_probs=91.4

Q ss_pred             HHHHHHHhhcCCCceEEecCc--cc-cCCCCCceecc-CCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeE
Q 023778           89 EKRLEKWFSQSPSNTIIATGF--IA-STPDNIPTTLK-RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI  164 (277)
Q Consensus        89 ~~~i~~~l~~~~~~VpVv~G~--i~-~~~~G~~~~lg-rggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~  164 (277)
                      .+.++.+++  .+.|||.+|.  ++ .++++.+.... .+++|.+|+.||.+|+|++++|+|||||||+ ||+ .|++++
T Consensus       173 ~~~I~~Ll~--~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~-~~~-~p~ak~  248 (312)
T PRK12686        173 HDTIRTLVD--GGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFI-NFN-KPNQQK  248 (312)
T ss_pred             HHHHHHHHH--CCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhcc-CCC-CCCCeE
Confidence            367888888  8899999876  21 23445433321 3578999999999999999999999999998 465 478999


Q ss_pred             EeeeCHHHHHHHHh---hcCCcchHH--HHHHHHh--CCCcEEEEeccCC-----CCCeeEEe
Q 023778          165 LRTLSYQEAWEMSY---FGANVLHPR--TIIPVMR--YDIPIVIRNIFNL-----SVPGIMIC  215 (277)
Q Consensus       165 i~~is~~e~~~l~~---~g~~v~~p~--a~~~a~~--~~i~v~I~n~~~~-----~~~GT~I~  215 (277)
                      |++++.+|+.++..   ++..+|.|+  ++..+.+  .+.+++|.+..+.     ...||+|.
T Consensus       249 I~~I~~~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~~~~i~~aL~G~~GT~I~  311 (312)
T PRK12686        249 LDDITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITSLEQAKEALAGNAGTHIT  311 (312)
T ss_pred             CCccCHHHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeCchHHHHHhCCCCCeEEe
Confidence            99999999999875   345789996  4444443  3578888874321     13799884

>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria

Probab=99.41  E-value=8.3e-13  Score=115.12  Aligned_cols=103  Identities=21%  Similarity=0.223  Sum_probs=81.7

Q ss_pred             HHHHHHHhhcCCCceEEecCcccc----CCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeE
Q 023778           89 EKRLEKWFSQSPSNTIIATGFIAS----TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI  164 (277)
Q Consensus        89 ~~~i~~~l~~~~~~VpVv~G~i~~----~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~  164 (277)
                      ...+...+.  .+.+||+.++ +.    +..++..++   .+|..|+.+|..++|++++++|||||||++|      +++
T Consensus        81 ~~~~~~~~~--~g~ipV~~P~-~~~~~~~~~~~~~~~---ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~d------a~~  148 (203)
T cd04240          81 LAELTDVLE--RGKIAILLPY-RLLLDTDPLPHSWEV---TSDSIAAWLAKKLGAKRLVIVTDVDGIYEKD------GKL  148 (203)
T ss_pred             HHHHHHHHH--CCCcEEEeCc-hhhcccCCCCccccc---CHHHHHHHHHHHcCCCEEEEEeCCccccCCC------CcC
Confidence            367777777  7899999875 33    223333332   3799999999999999999999999999864      899


Q ss_pred             EeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCC
Q 023778          165 LRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS  208 (277)
Q Consensus       165 i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~  208 (277)
                      ++++++.|+..     ...+++.+.+.+.+++++++|+|+..|+
T Consensus       149 i~~i~~~e~~~-----~~~id~~~~~~~~~~gi~v~I~~g~~~~  187 (203)
T cd04240         149 VNEIAAAELLG-----ETSVDPAFPRLLTKYGIRCYVVNGDDPE  187 (203)
T ss_pred             ccccCHHHhCC-----CCeehhhHHHHHHhCCCeEEEECCCCcc
Confidence            99999987643     5677776778889999999999987663

Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.

>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed

Probab=99.38  E-value=4.4e-12  Score=116.66  Aligned_cols=123  Identities=19%  Similarity=0.162  Sum_probs=91.3

Q ss_pred             HHHHHHhhcCCCceEEecCcc---ccCCCCCceecc-CCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEE
Q 023778           90 KRLEKWFSQSPSNTIIATGFI---ASTPDNIPTTLK-RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (277)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~i---~~~~~G~~~~lg-rggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i  165 (277)
                      +.++.+++  .+.|||++|.-   ..+.+|++.++. ..+.|.+|+.||..|+|++++|+|||||||++ |+ .|+++++
T Consensus       176 ~aI~~LLe--~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~-~~-~p~~~~i  251 (313)
T PRK12454        176 EVIKALVE--NGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYLN-YG-KPDQKPL  251 (313)
T ss_pred             HHHHHHHH--CCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeCC-CC-CCCCeEc
Confidence            66778887  89999999862   144556554432 23569999999999999999999999999986 43 4789999


Q ss_pred             eeeCHHHHHHHHh---hcCCcchHH--HH-HHHHhCCCcEEEEeccCC-----CCCeeEEeC
Q 023778          166 RTLSYQEAWEMSY---FGANVLHPR--TI-IPVMRYDIPIVIRNIFNL-----SVPGIMICR  216 (277)
Q Consensus       166 ~~is~~e~~~l~~---~g~~v~~p~--a~-~~a~~~~i~v~I~n~~~~-----~~~GT~I~~  216 (277)
                      ++++++|+.++..   ++...|.|+  ++ +.+.+.+.+++|.+..+.     ...||+|.+
T Consensus       252 ~~It~~e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~~~~i~~aL~G~~GT~I~~  313 (313)
T PRK12454        252 DKVTVEEAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIASLEKAVEALEGKTGTRIIP  313 (313)
T ss_pred             cccCHHHHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECchHHHHHHHCCCCCeEeCC
Confidence            9999999988764   335679884  44 555555677888764321     136999853

>PRK12354 carbamate kinase; Reviewed

Probab=99.37  E-value=1.2e-11  Score=113.40  Aligned_cols=124  Identities=20%  Similarity=0.179  Sum_probs=89.8

Q ss_pred             HHHHHHHhhcCCCceEEecCc--cc--cCCCCCceecc-CCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCe
Q 023778           89 EKRLEKWFSQSPSNTIIATGF--IA--STPDNIPTTLK-RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAV  163 (277)
Q Consensus        89 ~~~i~~~l~~~~~~VpVv~G~--i~--~~~~G~~~~lg-rggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~  163 (277)
                      .+.++.+++  .+.|||.+|.  ++  .+.++...... ..++|.+|+.||..++|+.++|+|||||||++++  .|+++
T Consensus       165 ~~~I~~Ll~--~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~--~p~~k  240 (307)
T PRK12354        165 IRPIRWLLE--KGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWG--KPTQR  240 (307)
T ss_pred             HHHHHHHHH--CCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCC--CCCCe
Confidence            478888988  7888777542  11  12223322211 3468999999999999999999999999998743  47899


Q ss_pred             EEeeeCHHHHHHHHhhcCCcchHH--H-HHHHHhCCCcEEEEeccC-----CCCCeeEEeCC
Q 023778          164 ILRTLSYQEAWEMSYFGANVLHPR--T-IIPVMRYDIPIVIRNIFN-----LSVPGIMICRP  217 (277)
Q Consensus       164 ~i~~is~~e~~~l~~~g~~v~~p~--a-~~~a~~~~i~v~I~n~~~-----~~~~GT~I~~~  217 (277)
                      +|++++.+|+.++ .+....|.|+  + ++.+.+.+.+++|.+..+     ....||+|.+.
T Consensus       241 ~i~~it~~e~~~~-~f~~GgM~pKV~AA~~~~~~gg~~viI~~~~~l~~al~G~~GT~I~~~  301 (307)
T PRK12354        241 AIAQATPDELREL-GFAAGSMGPKVEAACEFVRATGKIAGIGSLEDIQAILAGEAGTRISPE  301 (307)
T ss_pred             ECCCCCHHHHHhh-CCCcCChHHHHHHHHHHHHhCCCEEEECCHHHHHHHHCCCCceEEecC
Confidence            9999999999988 5677899996  3 455555566788865321     12379999764

>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]

Probab=99.31  E-value=1.2e-11  Score=108.07  Aligned_cols=160  Identities=16%  Similarity=0.228  Sum_probs=110.9

Q ss_pred             HhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCc
Q 023778           39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIP  118 (277)
Q Consensus        39 v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~  118 (277)
                      ..+.|.--...++-..|.++|+++     .++.+ |...+-+- -.+.+....+.+++.  -+.|||+.-      |..+
T Consensus        92 ~AAvGQ~~Lmalye~lF~Qy~~~i-----AQvLv-T~~Di~d~-~~r~Nl~~Ti~eLL~--m~viPIvNe------NDav  156 (285)
T KOG1154|consen   92 CAAVGQSGLMALYETLFTQYGITI-----AQVLV-TRNDILDE-QQRKNLQNTISELLS--MNVIPIVNE------NDAV  156 (285)
T ss_pred             HHHhCcchHHHHHHHHHHHhccch-----heeee-cCcchhhH-HHHHHHHHHHHHHHh--CCceeeecC------CCcc
Confidence            445566555677888999999985     45544 33222110 012233456677776  789999843      3322


Q ss_pred             ee--ccCCC---chHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHH-H-----HHhhcCCcchHH
Q 023778          119 TT--LKRDG---SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAW-E-----MSYFGANVLHPR  187 (277)
Q Consensus       119 ~~--lgrgg---sD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~-~-----l~~~g~~v~~p~  187 (277)
                      ..  .-+|+   +|.+|+++|..++||.++++|||||+||.+|.. ..+++++..+..+.. +     -+..|.++|..+
T Consensus       157 s~~~~~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~-~~~~li~~~~~~~~~v~~tfG~~SkvGtGGM~tK  235 (285)
T KOG1154|consen  157 SPREIPFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDA-DPSKLIHTFSPGDPQVSTTFGSKSKVGTGGMETK  235 (285)
T ss_pred             CCcccccCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCCC-CcceeeeeeccCCCCCccccCccCccCcCcchhh
Confidence            11  22344   799999999999999999999999999966553 457888888776554 2     234567899884


Q ss_pred             --HHHHHHhCCCcEEEEeccCCCCCeeEE
Q 023778          188 --TIIPVMRYDIPIVIRNIFNLSVPGIMI  214 (277)
Q Consensus       188 --a~~~a~~~~i~v~I~n~~~~~~~GT~I  214 (277)
                        |+..|...|++++|.|+..|+..++.+
T Consensus       236 v~AA~~A~~~Gv~viI~~g~~p~~I~~iv  264 (285)
T KOG1154|consen  236 VKAAVNALNAGVSVIITNGDAPENITDIV  264 (285)
T ss_pred             HHHHHHHhcCCceEEEeCCCChHHHHHHH
Confidence              789999999999999999887544333

>PRK09411 carbamate kinase; Reviewed

Probab=99.29  E-value=5.5e-11  Score=108.45  Aligned_cols=118  Identities=18%  Similarity=0.248  Sum_probs=88.1

Q ss_pred             HHHHHHhhcCCCceEEecCc--cc--cCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEE
Q 023778           90 KRLEKWFSQSPSNTIIATGF--IA--STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (277)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~--i~--~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i  165 (277)
                      +.++.+++  .+.|||.+|.  ++  .+.+|...++   +.|.+|+.||.+|+|++++|+|||||||..++  .|++++|
T Consensus       167 ~~I~~Ll~--~G~IVI~~gGGGIPV~~~~~G~e~vI---DkD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~~--~p~~~~I  239 (297)
T PRK09411        167 EAIELLLK--EGHVVICSGGGGVPVTEDGAGSEAVI---DKDLAAALLAEQINADGLVILTDADAVYENWG--TPQQRAI  239 (297)
T ss_pred             HHHHHHHH--CCCEEEecCCCCCCeEEcCCCeEEec---CHHHHHHHHHHHhCCCEEEEEeCchhhccCCC--CCCCcCC
Confidence            78889998  7888888643  22  2233444433   57999999999999999999999999998642  5788999


Q ss_pred             eeeCHHHHHHHHhhcCCcchHH---HHHHHHhCCCcEEEEeccCC-----CCCeeEEe
Q 023778          166 RTLSYQEAWEMSYFGANVLHPR---TIIPVMRYDIPIVIRNIFNL-----SVPGIMIC  215 (277)
Q Consensus       166 ~~is~~e~~~l~~~g~~v~~p~---a~~~a~~~~i~v~I~n~~~~-----~~~GT~I~  215 (277)
                      ++++.+|+..+.. ....|.|+   |++.+...+.+++|.+..+.     ...||+|.
T Consensus       240 ~~it~~e~~~~~~-~~GgM~pKVeAA~~~v~~~g~~a~I~~l~~~~~~l~G~~GT~I~  296 (297)
T PRK09411        240 RHATPDELAPFAK-ADGAMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCIS  296 (297)
T ss_pred             CCcCHHHHHHhcc-CCCCcHHHHHHHHHHHHhCCCeEEECChhHHHHHHCCCCCeEEe
Confidence            9999999987764 45678885   44666667788988763221     23699884

>PRK12352 putative carbamate kinase; Reviewed

Probab=99.21  E-value=1.4e-10  Score=107.34  Aligned_cols=123  Identities=14%  Similarity=0.141  Sum_probs=87.3

Q ss_pred             HHHHHHHhhcCCCceEEec-----CccccCCCCCceeccC-CCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCC
Q 023778           89 EKRLEKWFSQSPSNTIIAT-----GFIASTPDNIPTTLKR-DGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA  162 (277)
Q Consensus        89 ~~~i~~~l~~~~~~VpVv~-----G~i~~~~~G~~~~lgr-ggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a  162 (277)
                      .+.++.+++  .+.|+|.+     +. +.+..|+..++.- =+.|.+|+.+|.+|+|++++|+|||+|||.++|+  +++
T Consensus       176 ~~~I~~ll~--~g~iVi~~ggggiPv-~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV~GV~~d~~~--~~~  250 (316)
T PRK12352        176 APAIKALIQ--QGFVVIGAGGGGIPV-VRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKVCIHFGK--PQQ  250 (316)
T ss_pred             HHHHHHHHH--CCCEEEecCCCCCCE-EeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCchhhccCCCC--CCc
Confidence            377888887  78885554     22 2233343322100 1379999999999999999999999999987654  678


Q ss_pred             eEEeeeCHHHHHHHHhhc---CCcchHH--HHHHHHhCCC-cEEEEeccCC-----CCCeeEEeC
Q 023778          163 VILRTLSYQEAWEMSYFG---ANVLHPR--TIIPVMRYDI-PIVIRNIFNL-----SVPGIMICR  216 (277)
Q Consensus       163 ~~i~~is~~e~~~l~~~g---~~v~~p~--a~~~a~~~~i-~v~I~n~~~~-----~~~GT~I~~  216 (277)
                      +++++++.+|+.++...|   ...|.|+  ++..+.+.|+ +++|.+....     ...||+|..
T Consensus       251 ~li~~lt~~e~~~li~~g~i~~GgM~pKl~aA~~al~~Gv~~v~I~~~~~i~~al~g~~GT~I~~  315 (316)
T PRK12352        251 QALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITTPECLPAALRGETGTHIIK  315 (316)
T ss_pred             ccccccCHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHhCCCeEEEcchHHHHHHHcCCCCeEEEe
Confidence            899999999999998644   4678884  5545556665 6999874320     137898853

>PRK04531 acetylglutamate kinase; Provisional

Probab=99.11  E-value=1.4e-09  Score=103.81  Aligned_cols=113  Identities=14%  Similarity=0.214  Sum_probs=83.8

Q ss_pred             HHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCH-
Q 023778           92 LEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY-  170 (277)
Q Consensus        92 i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~-  170 (277)
                      ++.+++  .|.|||++++ +.+.+|++.+++   +|..|+.||.+|+|++++++|||+|||+.|      .+++++++. 
T Consensus       122 I~~~L~--~g~IPVlspl-g~~~~G~~~Nvn---aD~vA~~LA~aL~a~KLIfltdv~GV~d~~------g~~i~~i~~~  189 (398)
T PRK04531        122 VESSLR--AGSIPVIASL-GETPSGQILNIN---ADVAANELVSALQPYKIIFLTGTGGLLDAD------GKLISSINLS  189 (398)
T ss_pred             HHHHHH--CCCEEEEeCc-EECCCCcEEEEC---HHHHHHHHHHHcCCCEEEEEECCCCccCCC------CCCcccCCHH
Confidence            556666  8999999986 778889988774   899999999999999999999999999643      679999996 


Q ss_pred             HHHHHHHhhc--CCcchHH--HHHHHHhCCCc-EEEEeccCC----------CCCeeEEeCC
Q 023778          171 QEAWEMSYFG--ANVLHPR--TIIPVMRYDIP-IVIRNIFNL----------SVPGIMICRP  217 (277)
Q Consensus       171 ~e~~~l~~~g--~~v~~p~--a~~~a~~~~i~-v~I~n~~~~----------~~~GT~I~~~  217 (277)
                      +|...+...+  ..+|.|+  ++..+.+ ++| +.+.+...|          +..||.|...
T Consensus       190 ~e~~~l~~~~~vtgGM~~KL~~a~~al~-~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g  250 (398)
T PRK04531        190 TEYDHLMQQPWINGGMKLKLEQIKELLD-RLPLESSVSITSPSDLAKELFTHKGSGTLVRRG  250 (398)
T ss_pred             HHHHHHHhcCCCCccHHHHHHHHHHHHh-CCCcEEEEEecCCCHHHHHHccCCCCCeEEecC
Confidence            5777775433  3678775  4444444 343 444333333          3579999764

>PLN02825 amino-acid N-acetyltransferase

Probab=99.09  E-value=8.2e-10  Score=108.21  Aligned_cols=109  Identities=9%  Similarity=0.101  Sum_probs=84.1

Q ss_pred             HHHHHCCCCe----EEEccccceeecCC--------CCCC----cCCCchHHHHHHHHHhhcCCCceEEecCccccCCCC
Q 023778           53 AVVRKNGIDC----KWMDTREVLIVNPT--------SSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDN  116 (277)
Q Consensus        53 ~~L~~~Gi~a----~~l~~~~~~~~~~~--------~~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G  116 (277)
                      ..|+++|+++    ..++..+-.+++..        .+|.    .++|.    +.|+.+++  .|.|||+++. |.+.+|
T Consensus       111 ~~l~~~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~----~~i~~~L~--~g~Ipvispl-g~s~~G  183 (515)
T PLN02825        111 PNLRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDV----SRIKERLD--SNCIVLLSNL-GYSSSG  183 (515)
T ss_pred             hHHHhcCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEEEEcH----HHHHHHHh--CCCeEEECCc-eECCCC
Confidence            3579999998    56655443222211        2332    24554    88899998  8999999995 999999


Q ss_pred             CceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHh
Q 023778          117 IPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY  178 (277)
Q Consensus       117 ~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~  178 (277)
                      ++.|+.   +|..|+.+|.+|+|++++|+||++ +++.      +.+++++++.+|+.++..
T Consensus       184 e~~Nin---aD~vA~avA~aL~A~KLI~ltd~~-~~~~------~g~li~~l~~~e~~~li~  235 (515)
T PLN02825        184 EVLNCN---TYEVATACALAIGADKLICIVDGP-ILDE------NGRLIRFMTLEEADMLIR  235 (515)
T ss_pred             CEEeeC---HHHHHHHHHHHcCCCeEEEEeCcc-eecC------CCCCcCcCCHHHHHHHHH
Confidence            999984   999999999999999999999977 5532      357999999999998864

>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]

Probab=98.93  E-value=1.6e-09  Score=91.35  Aligned_cols=83  Identities=25%  Similarity=0.350  Sum_probs=72.2

Q ss_pred             chHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEecc
Q 023778          126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIF  205 (277)
Q Consensus       126 sD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~  205 (277)
                      ||..+..+|+.+++.++++.|||||||+.+|+    ++++++|+..|...    |-..++|-+-.++.+++++++|.|+.
T Consensus       118 SDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~----~kLv~eI~A~dl~~----~~t~vD~~~P~Ll~k~~m~~~Vvng~  189 (212)
T COG2054         118 SDSISVWIAAKAGATEVVKATDVDGIYEEDPK----GKLVREIRASDLKT----GETSVDPYLPKLLVKYKMNCRVVNGK  189 (212)
T ss_pred             ccHHHHHHHHHcCCcEEEEEecCCcccccCCc----chhhhhhhHhhccc----CcccccchhhHHHHHcCCceEEECCC
Confidence            69999999999999999999999999998765    58999888776643    66788998889999999999999998


Q ss_pred             CCC----------CCeeEEeC
Q 023778          206 NLS----------VPGIMICR  216 (277)
Q Consensus       206 ~~~----------~~GT~I~~  216 (277)
                      .|+          .+||+|.+
T Consensus       190 ~pervi~~lrGk~~v~T~Ivg  210 (212)
T COG2054         190 EPERVILALRGKEVVGTLIVG  210 (212)
T ss_pred             CHHHHHHHHhccccceEEEeC
Confidence            874          47888865

>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]

Probab=98.54  E-value=5.2e-07  Score=81.38  Aligned_cols=123  Identities=21%  Similarity=0.275  Sum_probs=86.4

Q ss_pred             HHHHHHhhcCCCceEEecCc--cccCC--CCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEE
Q 023778           90 KRLEKWFSQSPSNTIIATGF--IASTP--DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (277)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~--i~~~~--~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i  165 (277)
                      +.|+.+++  .|.++|..|-  ++.-+  +|..-.=.-=+-|.+++.||..++||.++|+||||+||-.=-  -|+-+.+
T Consensus       175 ~~Ik~L~~--~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~n~g--kp~q~~L  250 (312)
T COG0549         175 EAIKALLE--SGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYVNFG--KPNQQAL  250 (312)
T ss_pred             HHHHHHHh--CCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchheecCC--Cccchhh
Confidence            56777887  7778877663  11111  111000000135999999999999999999999999997522  2678999


Q ss_pred             eeeCHHHHHHHHh---hcCCcchHH---HHHHHHhCCCcEEEEeccCC-----CCCeeEEeC
Q 023778          166 RTLSYQEAWEMSY---FGANVLHPR---TIIPVMRYDIPIVIRNIFNL-----SVPGIMICR  216 (277)
Q Consensus       166 ~~is~~e~~~l~~---~g~~v~~p~---a~~~a~~~~i~v~I~n~~~~-----~~~GT~I~~  216 (277)
                      ++++.+|+.....   |...-|-|+   |+..+...|=+..|.+-.+.     ...||.|.+
T Consensus       251 ~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~ItsLe~~~~~l~g~~GT~I~~  312 (312)
T COG0549         251 DRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITSLENAEAALEGKAGTVIVP  312 (312)
T ss_pred             cccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECcHHHHHHHhccCCCcEecC
Confidence            9999999988865   445788885   66777777778888765432     357998853

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=98.20  E-value=2.7e-06  Score=60.09  Aligned_cols=37  Identities=35%  Similarity=0.517  Sum_probs=35.4

Q ss_pred             eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +++|+++|.+|.+.+++.+++|++|+++||+++|++|
T Consensus         1 ~~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q   37 (66)
T cd04919           1 LAILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQ   37 (66)
T ss_pred             CeEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEe
Confidence            5799999999999999999999999999999999986

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=98.16  E-value=3.7e-06  Score=59.51  Aligned_cols=37  Identities=30%  Similarity=0.555  Sum_probs=35.0

Q ss_pred             eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +++|+++|.+|...||+++|+|++|+++||++.+++|
T Consensus         1 ~~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~   37 (64)
T cd04937           1 CAKVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTAD   37 (64)
T ss_pred             CeEEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEc
Confidence            4789999999999999999999999999999999875

This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=98.16  E-value=3.7e-06  Score=59.11  Aligned_cols=37  Identities=38%  Similarity=0.699  Sum_probs=35.3

Q ss_pred             eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +++|+++|.+|.+.+++.+++|++|+++||+++|++|
T Consensus         1 ~~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~   37 (66)
T cd04922           1 LSILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ   37 (66)
T ss_pred             CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence            4789999999999999999999999999999999986

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=98.13  E-value=3.4e-06  Score=60.18  Aligned_cols=40  Identities=40%  Similarity=0.654  Sum_probs=36.5

Q ss_pred             eecCeeEEEEecCCCCC-chhHHHHHHHHHHhCCCcEEEEe
Q 023778          237 TIDNLALVNVEGTGMAG-VPGTANAIFGAVKDVGANVIMIS  276 (277)
Q Consensus       237 ~~~nia~Isvvg~gm~~-~~gv~a~if~~L~~~~I~V~~is  276 (277)
                      +.+++++|+|+|.+|.. .||+++++|+.|+++||+|.++|
T Consensus         2 ~~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is   42 (65)
T PF13840_consen    2 IEEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS   42 (65)
T ss_dssp             EESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred             ccCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence            57899999999999976 99999999999999999999986

>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway

Probab=98.10  E-value=6e-06  Score=59.04  Aligned_cols=36  Identities=28%  Similarity=0.455  Sum_probs=34.1

Q ss_pred             eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +++|+++|.||. .||+++|+|++|++.||++.|++|
T Consensus         2 ~a~VsvVG~gm~-~~gv~~ki~~~L~~~~I~v~~i~~   37 (66)
T cd04915           2 VAIVSVIGRDLS-TPGVLARGLAALAEAGIEPIAAHQ   37 (66)
T ss_pred             EEEEEEECCCCC-cchHHHHHHHHHHHCCCCEEEEEe
Confidence            689999999995 899999999999999999999987

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas

>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

Probab=98.02  E-value=1e-05  Score=56.75  Aligned_cols=37  Identities=57%  Similarity=0.924  Sum_probs=35.3

Q ss_pred             eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +++|+++|.++...+++.+++|+.|++++|+++|++|
T Consensus         1 ~~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q   37 (66)
T cd04924           1 VAVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQ   37 (66)
T ss_pred             CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence            4799999999999999999999999999999999986

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06291 aspartate kinase; Provisional

Probab=98.01  E-value=1.5e-05  Score=77.80  Aligned_cols=96  Identities=22%  Similarity=0.332  Sum_probs=66.1

Q ss_pred             CcchHHHHHHHHhCCCcEEEEeccCCC-CCeeEEeCCCCCC---CcchhhccCCceeeEeecCeeEEEEecCCCCCchhH
Q 023778          182 NVLHPRTIIPVMRYDIPIVIRNIFNLS-VPGIMICRPPVDE---NEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGT  257 (277)
Q Consensus       182 ~v~~p~a~~~a~~~~i~v~I~n~~~~~-~~GT~I~~~~~~~---~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv  257 (277)
                      .++..+.+..+.++||++...+....+ ...-.|.....+.   .+........++.+++.+|+++|+++|.+|.+.+|+
T Consensus       335 ~g~~arvf~~L~~~gI~V~mIsq~sse~sIsf~V~~~d~~~av~~L~~~~~~~~~~~i~~~~~~a~IsvvG~gm~~~~gv  414 (465)
T PRK06291        335 PGTAARIFSALAEEGVNVIMISQGSSESNISLVVDEADLEKALKALRREFGEGLVRDVTFDKDVCVVAVVGAGMAGTPGV  414 (465)
T ss_pred             ccHHHHHHHHHHHCCCcEEEEEecCCCceEEEEEeHHHHHHHHHHHHHHHHHhcCcceEEeCCEEEEEEEcCCccCCcCh
Confidence            345557788889999998776533222 1221222111000   000001112467899999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcEEEEeC
Q 023778          258 ANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       258 ~a~if~~L~~~~I~V~~isq  277 (277)
                      ++|+|++|+++||+|.||+|
T Consensus       415 ~~rif~aL~~~~I~v~~isq  434 (465)
T PRK06291        415 AGRIFSALGESGINIKMISQ  434 (465)
T ss_pred             HHHHHHHHHHCCCCEEEEEe
Confidence            99999999999999999997

>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=97.96  E-value=1.5e-05  Score=55.94  Aligned_cols=37  Identities=38%  Similarity=0.535  Sum_probs=35.2

Q ss_pred             eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +++|+++|.++...+++.+++|+.|+++||+++|++|
T Consensus         1 ~~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~   37 (66)
T cd04916           1 LALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQ   37 (66)
T ss_pred             CeEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence            4789999999999999999999999999999999986

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=97.95  E-value=1.5e-05  Score=58.47  Aligned_cols=37  Identities=22%  Similarity=0.354  Sum_probs=34.8

Q ss_pred             eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +++|+|.+.+|.+.||+++++|+.|++++|+|+||+|
T Consensus         1 ~~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~   37 (75)
T cd04932           1 QTLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT   37 (75)
T ss_pred             CEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee
Confidence            4789999999999999999999999999999999986

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=97.92  E-value=1.8e-05  Score=58.61  Aligned_cols=37  Identities=19%  Similarity=0.421  Sum_probs=35.1

Q ss_pred             eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +++|+|.+.+|.+.||+++++|+.|+++||+|+||+|
T Consensus         1 ~~~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~q   37 (78)
T cd04933           1 VTMLDITSTRMLGQYGFLAKVFSIFETLGISVDVVAT   37 (78)
T ss_pred             CEEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe
Confidence            4689999999999999999999999999999999986

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.

>PLN02551 aspartokinase

Probab=97.91  E-value=4.3e-05  Score=75.55  Aligned_cols=94  Identities=11%  Similarity=0.093  Sum_probs=64.7

Q ss_pred             CcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCC--c--chhh---ccCCceeeEeecCeeEEEEecCCCCCc
Q 023778          182 NVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDEN--E--DEQI---IDSPVKGFATIDNLALVNVEGTGMAGV  254 (277)
Q Consensus       182 ~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~--~--~~~~---~~~~v~~i~~~~nia~Isvvg~gm~~~  254 (277)
                      .++..+.+..+.++||++....... ....-.+........  .  ..+.   .-..+..+.+.+++++|+++|. |..+
T Consensus       380 ~g~~arvf~~l~~~~I~Vd~IssSe-~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~~~~V~v~~~vAiISvVG~-~~~~  457 (521)
T PLN02551        380 YGFLAKVFSTFEDLGISVDVVATSE-VSISLTLDPSKLWSRELIQQELDHLVEELEKIAVVNLLQGRSIISLIGN-VQRS  457 (521)
T ss_pred             ccHHHHHHHHHHHcCCcEEEEeccC-CEEEEEEehhHhhhhhhHHHHHHHHHHHhhcCCeEEEeCCEEEEEEEcc-CCCC
Confidence            4556678889999999987765432 122222222211110  0  0000   0113567899999999999998 8889


Q ss_pred             hhHHHHHHHHHHhCCCcEEEEeC
Q 023778          255 PGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       255 ~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +|+++|+|++|+++||||+||+|
T Consensus       458 ~gvaariF~aLa~~gInV~mIsq  480 (521)
T PLN02551        458 SLILEKVFRVLRTNGVNVQMISQ  480 (521)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEEe
Confidence            99999999999999999999997

>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=97.91  E-value=1.9e-05  Score=56.11  Aligned_cols=35  Identities=26%  Similarity=0.345  Sum_probs=33.0

Q ss_pred             eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      ++|+++|. +...+|+++|+|++|+++||+|.|++|
T Consensus         2 a~VsvVG~-~~~~~~~~~~i~~aL~~~~I~v~~i~~   36 (65)
T cd04918           2 SIISLIGN-VQRSSLILERAFHVLYTKGVNVQMISQ   36 (65)
T ss_pred             cEEEEECC-CCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence            68999999 888899999999999999999999987

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=97.90  E-value=3.8e-05  Score=74.51  Aligned_cols=93  Identities=25%  Similarity=0.248  Sum_probs=62.1

Q ss_pred             cchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCc---chhhc-cCCceeeEeecCeeEEEEecCCCCCchhHH
Q 023778          183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENE---DEQII-DSPVKGFATIDNLALVNVEGTGMAGVPGTA  258 (277)
Q Consensus       183 v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~---~~~~~-~~~v~~i~~~~nia~Isvvg~gm~~~~gv~  258 (277)
                      ++..+-+..+.+++|++........+ .+-.+.....+.+.   ..... ......+.+++++++|+++|.||.++||++
T Consensus       322 g~~a~vf~~l~~~~i~v~~I~q~~~~-~~i~~~v~~~~~~~a~~~l~~~~~~~~~~v~~~~~~a~vsiVG~gm~~~~gva  400 (447)
T COG0527         322 GFAARVFGILAEAGINVDLITQSISE-VSISFTVPESDAPRALRALLEEKLELLAEVEVEEGLALVSIVGAGMRSNPGVA  400 (447)
T ss_pred             cHHHHHHHHHHHcCCcEEEEEeccCC-CeEEEEEchhhHHHHHHHHHHHHhhhcceEEeeCCeeEEEEEccccccCcCHH
Confidence            55567788889999987544322211 22222221111000   00000 011126889999999999999999999999


Q ss_pred             HHHHHHHHhCCCcEEEEe
Q 023778          259 NAIFGAVKDVGANVIMIS  276 (277)
Q Consensus       259 a~if~~L~~~~I~V~~is  276 (277)
                      +++|++|++++|||.||+
T Consensus       401 a~~f~aL~~~~ini~~is  418 (447)
T COG0527         401 ARIFQALAEENINIIMIS  418 (447)
T ss_pred             HHHHHHHHhCCCcEEEEE
Confidence            999999999999999997

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=97.89  E-value=3.9e-05  Score=79.74  Aligned_cols=95  Identities=20%  Similarity=0.279  Sum_probs=66.5

Q ss_pred             cchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCC--------cchhhccCCceeeEeecCeeEEEEecCCCCCc
Q 023778          183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDEN--------EDEQIIDSPVKGFATIDNLALVNVEGTGMAGV  254 (277)
Q Consensus       183 v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~--------~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~  254 (277)
                      ++-.+.+..+.++||++...+....+..=+...+...-..        +..+.....++.+++.+|+++|+++|.+|.+.
T Consensus       330 G~~arIf~~La~~gI~V~mIsqssSe~sIsf~V~~~d~~~av~~L~~~f~~el~~~~~~~i~~~~~valIsvvG~gm~~~  409 (819)
T PRK09436        330 GMASRVFAALSRAGISVVLITQSSSEYSISFCVPQSDAAKAKRALEEEFALELKEGLLEPLEVEENLAIISVVGDGMRTH  409 (819)
T ss_pred             CHHHHHHHHHHHCCCcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCEEEEEEEccCcccC
Confidence            4445778889999999877653322211122222211000        11111223577899999999999999999999


Q ss_pred             hhHHHHHHHHHHhCCCcEEEEeC
Q 023778          255 PGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       255 ~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +|+++|+|++|++.||||.||+|
T Consensus       410 ~gv~arif~aL~~~~InI~~Isq  432 (819)
T PRK09436        410 PGIAAKFFSALGRANINIVAIAQ  432 (819)
T ss_pred             cCHHHHHHHHHHHCCCCEEEEEe
Confidence            99999999999999999999997

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=97.87  E-value=2.4e-05  Score=57.41  Aligned_cols=37  Identities=30%  Similarity=0.424  Sum_probs=35.1

Q ss_pred             eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +++|++.+.+|.+.+|+++++|++|++++|+|+||+|
T Consensus         1 ~~~i~i~~~~~~~~~g~~~~IF~~La~~~I~vDmI~~   37 (75)
T cd04935           1 IRLVSMETLGMWQQVGFLADVFAPFKKHGVSVDLVST   37 (75)
T ss_pred             CEEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe
Confidence            4689999999999999999999999999999999986

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains

Probab=97.85  E-value=2.7e-05  Score=56.90  Aligned_cols=37  Identities=19%  Similarity=0.261  Sum_probs=35.1

Q ss_pred             eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      ++.|+|.+.+|...+|+++++|+.|+++||+|+||+|
T Consensus         1 ~~~I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~~   37 (73)
T cd04934           1 ILVINIHSNKKSLSHGFLARIFAILDKYRLSVDLIST   37 (73)
T ss_pred             CEEEEEEcccCccccCHHHHHHHHHHHcCCcEEEEEe
Confidence            4689999999999999999999999999999999986

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=97.80  E-value=4.2e-05  Score=55.91  Aligned_cols=37  Identities=27%  Similarity=0.451  Sum_probs=34.9

Q ss_pred             eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +++|+++|.+|.+.+|+++++|++|++++|++++++|
T Consensus         1 ~~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~   37 (75)
T cd04912           1 ITLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIST   37 (75)
T ss_pred             CEEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEc
Confidence            4789999999999999999999999999999999975

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD

>PRK09034 aspartate kinase; Reviewed

Probab=97.73  E-value=5.5e-05  Score=73.68  Aligned_cols=94  Identities=19%  Similarity=0.147  Sum_probs=64.6

Q ss_pred             cchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCC----Ccchhhc-cCCceeeEeecCeeEEEEecCCCCCchhH
Q 023778          183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE----NEDEQII-DSPVKGFATIDNLALVNVEGTGMAGVPGT  257 (277)
Q Consensus       183 v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~----~~~~~~~-~~~v~~i~~~~nia~Isvvg~gm~~~~gv  257 (277)
                      .+-.+.+..+.++||++...+... ....-.+...+.+.    ....+.. ...+.++++.+|+++|+++|.+|.+.||+
T Consensus       323 g~~a~if~~la~~~I~Vd~i~ss~-~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I~~~~~va~VsivG~g~~~~~gv  401 (454)
T PRK09034        323 GFGRKVLQILEDHGISYEHMPSGI-DDLSIIIRERQLTPKKEDEILAEIKQELNPDELEIEHDLAIIMVVGEGMRQTVGV  401 (454)
T ss_pred             cHHHHHHHHHHHcCCeEEEEcCCC-cEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceEEEeCCEEEEEEECCCCCCCccH
Confidence            344467788899999987764221 11222222211110    0000111 12457899999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcEEEEeC
Q 023778          258 ANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       258 ~a~if~~L~~~~I~V~~isq  277 (277)
                      ++|+|++|+++||||+||+|
T Consensus       402 ~arif~aL~~~~InV~mIsq  421 (454)
T PRK09034        402 AAKITKALAEANINIQMINQ  421 (454)
T ss_pred             HHHHHHHHHHCCCCEEEEEe
Confidence            99999999999999999987

>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=97.71  E-value=6.8e-05  Score=54.93  Aligned_cols=37  Identities=62%  Similarity=0.996  Sum_probs=35.2

Q ss_pred             eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +++|+++|.+|.+.+++.+++|+.|++++|+++|++|
T Consensus         1 ~~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~   37 (80)
T cd04921           1 VALINIEGTGMVGVPGIAARIFSALARAGINVILISQ   37 (80)
T ss_pred             CEEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEe
Confidence            5789999999999999999999999999999999986

This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat

>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=97.70  E-value=6.6e-05  Score=52.40  Aligned_cols=35  Identities=23%  Similarity=0.307  Sum_probs=33.3

Q ss_pred             EEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       243 ~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      .|+|.+.+|.+.+|+.+++|+.|++++|+++|++|
T Consensus         2 ~i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~i~t   36 (62)
T cd04890           2 AIEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPT   36 (62)
T ss_pred             EEEEeccccCcccCHHHHHHHHHHHcCCeEEEEec
Confidence            58999999999999999999999999999999975

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel

>TIGR00657 asp_kinases aspartate kinase

Probab=97.69  E-value=0.00013  Score=70.64  Aligned_cols=95  Identities=22%  Similarity=0.273  Sum_probs=65.4

Q ss_pred             cchHHHHHHHHhCCCcEEEEeccCCC-CCeeEEeCCCCCCC---cchhhccCCceeeEeecCeeEEEEecCCCCCchhHH
Q 023778          183 VLHPRTIIPVMRYDIPIVIRNIFNLS-VPGIMICRPPVDEN---EDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTA  258 (277)
Q Consensus       183 v~~p~a~~~a~~~~i~v~I~n~~~~~-~~GT~I~~~~~~~~---~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~  258 (277)
                      ++-.+.+..+.+++|++.......++ ...-.|.....+..   +........++.|++.+|+++|+++|.+|.+.||++
T Consensus       316 g~la~if~~L~~~~I~I~~i~q~~se~sIs~~I~~~~~~~a~~~L~~~~~~~~~~~I~~~~~~a~VsvvG~~~~~~~g~~  395 (441)
T TIGR00657       316 GFLARVFGALAEAGINVDLITQSSSETSISFTVDKEDADQAKTLLKSELNLSALSSVEVEKGLAKVSLVGAGMKSAPGVA  395 (441)
T ss_pred             cHHHHHHHHHHHcCCeEEEEEecCCCceEEEEEEHHHHHHHHHHHHHHHHhcCcceEEEcCCeEEEEEEcCCCCCCCchH
Confidence            34456778889999997666422222 11212222110000   000111346788999999999999999999999999


Q ss_pred             HHHHHHHHhCCCcEEEEeC
Q 023778          259 NAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       259 a~if~~L~~~~I~V~~isq  277 (277)
                      +++|++|+++||||+|++|
T Consensus       396 a~if~~La~~~Inv~~i~~  414 (441)
T TIGR00657       396 SKIFEALAQNGINIEMISS  414 (441)
T ss_pred             HHHHHHHHHCCCCEEEEEe
Confidence            9999999999999999974

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=97.60  E-value=0.00013  Score=50.42  Aligned_cols=36  Identities=42%  Similarity=0.680  Sum_probs=33.8

Q ss_pred             eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      ++|+++|.++.+.+++.+++|+.|++++|+++|++|
T Consensus         1 ~~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~   36 (63)
T cd04936           1 AKVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIST   36 (63)
T ss_pred             CEEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence            478999999999999999999999999999999975

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu

>PRK06635 aspartate kinase; Reviewed

Probab=97.59  E-value=0.00021  Score=68.38  Aligned_cols=95  Identities=21%  Similarity=0.188  Sum_probs=65.6

Q ss_pred             cchHHHHHHHHhCCCcEEEEeccCCCC--CeeEE-eCCCCCCCc--chhh--ccCCceeeEeecCeeEEEEecCCCCCch
Q 023778          183 VLHPRTIIPVMRYDIPIVIRNIFNLSV--PGIMI-CRPPVDENE--DEQI--IDSPVKGFATIDNLALVNVEGTGMAGVP  255 (277)
Q Consensus       183 v~~p~a~~~a~~~~i~v~I~n~~~~~~--~GT~I-~~~~~~~~~--~~~~--~~~~v~~i~~~~nia~Isvvg~gm~~~~  255 (277)
                      ++-.+.+..+.++||++...+...++.  ..-.+ .+.......  ....  ....++.+++.+|+++++++|.+|.+.|
T Consensus       275 g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~~~a~~~L~~~~~~~~~~~i~~~~~ia~isvvG~~~~~~~  354 (404)
T PRK06635        275 GIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDLEKALELLEEVKDEIGAESVTYDDDIAKVSVVGVGMRSHP  354 (404)
T ss_pred             cHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHHHHHHHHHHHHHHHcCcceEEEcCCeEEEEEECCCCCCCc
Confidence            444467788899999988776654331  11122 121110000  0000  0124677999999999999999999999


Q ss_pred             hHHHHHHHHHHhCCCcEEEEeC
Q 023778          256 GTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       256 gv~a~if~~L~~~~I~V~~isq  277 (277)
                      |+++++|++|+++||||.++++
T Consensus       355 g~~a~i~~~La~~~Ini~~i~s  376 (404)
T PRK06635        355 GVAAKMFEALAEEGINIQMIST  376 (404)
T ss_pred             hHHHHHHHHHHHCCCCEEEEEe
Confidence            9999999999999999999864

>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=97.57  E-value=0.00015  Score=49.82  Aligned_cols=36  Identities=58%  Similarity=0.924  Sum_probs=34.2

Q ss_pred             eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      ++|+++|.+|.+.+++.+++|+.|++++|++++++|
T Consensus         1 ~~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~   36 (65)
T cd04892           1 ALVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ   36 (65)
T ss_pred             CEEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence            579999999999999999999999999999999987

This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=97.56  E-value=0.0002  Score=68.45  Aligned_cols=94  Identities=20%  Similarity=0.283  Sum_probs=63.9

Q ss_pred             cchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCC----cchhhccCCceeeEeecCeeEEEEecCCCCCchhHH
Q 023778          183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDEN----EDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTA  258 (277)
Q Consensus       183 v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~----~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~  258 (277)
                      ++-.+.+..+.+++|++...+....+..=+.+.+......    +...........+.+++++++|+++|.+|.+.||++
T Consensus       275 g~~~~if~~L~~~~I~i~~i~~~~s~~~Is~~V~~~d~~~a~~~L~~~~~~~~~~~i~~~~~~a~IsvVG~~~~~~~g~~  354 (401)
T TIGR00656       275 GFLARIFGALAERNINVDLISQTPSETSISLTVDETDADEAVRALKDQSGAAGLDRVEVEEGLAKVSIVGAGMVGAPGVA  354 (401)
T ss_pred             cHHHHHHHHHHHcCCcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHHhcCCceEEEeCCeEEEEEECCCcccCccHH
Confidence            4455677888999999877765432211122222211000    000000112467889999999999999999999999


Q ss_pred             HHHHHHHHhCCCcEEEEe
Q 023778          259 NAIFGAVKDVGANVIMIS  276 (277)
Q Consensus       259 a~if~~L~~~~I~V~~is  276 (277)
                      +++|++|+++||||.+++
T Consensus       355 a~i~~~L~~~gIni~~i~  372 (401)
T TIGR00656       355 SEIFSALEEKNINILMIG  372 (401)
T ss_pred             HHHHHHHHHCCCcEEEEE
Confidence            999999999999999875

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=97.56  E-value=0.00017  Score=48.57  Aligned_cols=36  Identities=53%  Similarity=0.792  Sum_probs=33.8

Q ss_pred             eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      ++|+++|.+|...+|+.+++|+.|++++|++++++|
T Consensus         1 ~~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~   36 (60)
T cd04868           1 AKVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ   36 (60)
T ss_pred             CEEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence            478999999999999999999999999999999986

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am

>PRK05925 aspartate kinase; Provisional

Probab=97.54  E-value=0.00039  Score=67.49  Aligned_cols=90  Identities=13%  Similarity=0.003  Sum_probs=61.4

Q ss_pred             HHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCC-cch-hhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHH
Q 023778          186 PRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDEN-EDE-QIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFG  263 (277)
Q Consensus       186 p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~-~~~-~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~  263 (277)
                      .+.+..+.++||++.+.++.. ....-.|........ ... ......+..+++.+|+++|+++|.||.+ +++++++|+
T Consensus       316 ~~if~~l~~~~I~vd~i~s~~-~sis~~i~~~~~~~~~~~~l~~~l~~~~~i~~~~~~a~VsvVG~gm~~-~~v~~~~~~  393 (440)
T PRK05925        316 EDVLGILRSLGIVPGLVMAQN-LGVYFTIDDDDISEEYPQHLTDALSAFGTVSCEGPLALITMIGAKLAS-WKVVRTFTE  393 (440)
T ss_pred             HHHHHHHHHcCCcEEEEeccC-CEEEEEEechhccHHHHHHHHHHhcCCceEEEECCEEEEEEeCCCccc-ccHHHHHHH
Confidence            367788899999985553332 222222222111110 000 0011245678999999999999999997 789999999


Q ss_pred             HHHhCCCcEEEEeC
Q 023778          264 AVKDVGANVIMISQ  277 (277)
Q Consensus       264 ~L~~~~I~V~~isq  277 (277)
                      +|++.+|||.+++|
T Consensus       394 aL~~~~Ini~~i~~  407 (440)
T PRK05925        394 KLRGYQTPVFCWCQ  407 (440)
T ss_pred             HHhhCCCCEEEEEC
Confidence            99999999999987

>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=97.53  E-value=0.00019  Score=49.59  Aligned_cols=36  Identities=42%  Similarity=0.677  Sum_probs=33.8

Q ss_pred             eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      ++|+++|.++...+++.+++|+.|++++|++++++|
T Consensus         1 ~~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~   36 (63)
T cd04923           1 AKVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIST   36 (63)
T ss_pred             CEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEc
Confidence            478999999999999999999999999999999975

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09181 aspartate kinase; Validated

Probab=97.48  E-value=0.00017  Score=70.54  Aligned_cols=92  Identities=15%  Similarity=0.225  Sum_probs=60.3

Q ss_pred             CcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCC--Ccchhhcc-CCceeeEeecCeeEEEEecCCCCCchhHH
Q 023778          182 NVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE--NEDEQIID-SPVKGFATIDNLALVNVEGTGMAGVPGTA  258 (277)
Q Consensus       182 ~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~--~~~~~~~~-~~v~~i~~~~nia~Isvvg~gm~~~~gv~  258 (277)
                      .++..+.+..+.+++|++....... ....-.+ ....+.  ....+... -....+.. +++++|++||.||. +||++
T Consensus       343 ~g~~~~if~~l~~~~i~v~~i~ss~-~sis~~v-~~~~~~~~~~~~~L~~~~~~~~i~~-~~~a~VsvVG~gm~-~~gv~  418 (475)
T PRK09181        343 DGYDLEILEILTRHKVSYISKATNA-NTITHYL-WGSLKTLKRVIAELEKRYPNAEVTV-RKVAIVSAIGSNIA-VPGVL  418 (475)
T ss_pred             chHHHHHHHHHHHcCCeEEEEEecC-cEEEEEE-cCChHHHHHHHHHHHHhcCCceEEE-CCceEEEEeCCCCC-cccHH
Confidence            3455577888999999976554332 1122122 221110  00000110 11235664 99999999999995 99999


Q ss_pred             HHHHHHHHhCCCcEEEEeC
Q 023778          259 NAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       259 a~if~~L~~~~I~V~~isq  277 (277)
                      +|+|++|+++||||.|++|
T Consensus       419 ak~f~aL~~~~Ini~~i~q  437 (475)
T PRK09181        419 AKAVQALAEAGINVLALHQ  437 (475)
T ss_pred             HHHHHHHHHCCCCeEEEEe
Confidence            9999999999999999997

>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=97.46  E-value=0.00019  Score=50.52  Aligned_cols=35  Identities=40%  Similarity=0.587  Sum_probs=31.3

Q ss_pred             eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +++|+++|.+|.+.||+++|+|++|++  ++|.+++|
T Consensus         1 ~alIsvvG~~~~~~~~v~~~i~~~L~~--i~i~~i~~   35 (64)
T cd04917           1 LALVALIGNDISETAGVEKRIFDALED--INVRMICY   35 (64)
T ss_pred             CeEEEEECCCccCCcCHHHHHHHHHHh--CCeEEEEE
Confidence            589999999999999999999999975  78877775

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08210 aspartate kinase I; Reviewed

Probab=97.43  E-value=0.00042  Score=66.42  Aligned_cols=112  Identities=20%  Similarity=0.240  Sum_probs=71.8

Q ss_pred             eEEeeeCHHHHHHHHh-hc---CCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEee
Q 023778          163 VILRTLSYQEAWEMSY-FG---ANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATI  238 (277)
Q Consensus       163 ~~i~~is~~e~~~l~~-~g---~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~  238 (277)
                      +.++.+++.+-..+.. ++   ..++..+.+..+.++||++...+... + .++................... ..+.+.
T Consensus       260 ~~v~~It~~~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~-~-~is~~v~~~~~~~a~~~l~~~~-~~v~~~  336 (403)
T PRK08210        260 RLITGIAHVSNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP-T-EVVFTVSDEDSEKAKEILENLG-LKPSVR  336 (403)
T ss_pred             CceEEEEEcCCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC-c-eEEEEEcHHHHHHHHHHHHHhC-CcEEEe
Confidence            3566666654332222 11   13455567788999999987765542 2 2333323211000000001111 157889


Q ss_pred             cCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       239 ~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +|+++|+++|.+|.+.||+++|+|++|+++||+|.++++
T Consensus       337 ~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~  375 (403)
T PRK08210        337 ENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSAD  375 (403)
T ss_pred             CCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEec
Confidence            999999999999999999999999999999999998764

>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC)

Probab=97.33  E-value=0.00035  Score=49.32  Aligned_cols=34  Identities=12%  Similarity=0.178  Sum_probs=30.3

Q ss_pred             eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEE
Q 023778          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMI  275 (277)
Q Consensus       242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~i  275 (277)
                      ++|+++|.||...||+++|+|++|++.+|++.+.
T Consensus         1 a~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i~~   34 (63)
T cd04920           1 AAVSLVGRGIRSLLHKLGPALEVFGKKPVHLVSQ   34 (63)
T ss_pred             CEEEEECCCcccCccHHHHHHHHHhcCCceEEEE
Confidence            5899999999999999999999999987776554

This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07431 aspartate kinase; Provisional

Probab=97.31  E-value=0.00038  Score=69.89  Aligned_cols=44  Identities=36%  Similarity=0.601  Sum_probs=41.7

Q ss_pred             eeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEe
Q 023778          233 KGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS  276 (277)
Q Consensus       233 ~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~is  276 (277)
                      ..+.+++++++|+++|.||..+||+++|+|++|+++||+|.+++
T Consensus       511 ~~i~~~~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~  554 (587)
T PRK07431        511 AEVEDGPAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA  554 (587)
T ss_pred             ceEEEeCCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence            45788999999999999999999999999999999999999986

>PRK09084 aspartate kinase III; Validated

Probab=97.31  E-value=0.00091  Score=65.11  Aligned_cols=109  Identities=16%  Similarity=0.198  Sum_probs=69.7

Q ss_pred             EEeeeCHHHHHHHHhh------cCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCC--------Ccchhhcc
Q 023778          164 ILRTLSYQEAWEMSYF------GANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE--------NEDEQIID  229 (277)
Q Consensus       164 ~i~~is~~e~~~l~~~------g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~--------~~~~~~~~  229 (277)
                      .++-+++.+-..+...      +..++-.+.+..+.+++|++...+... ....-.|.......        .+..+.  
T Consensus       296 ~v~~it~~~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~sse-~sIs~~i~~~~~~~~~~~~~~~~l~~el--  372 (448)
T PRK09084        296 LFRAIALRRNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITTSE-VSVSLTLDTTGSTSTGDTLLTQALLTEL--  372 (448)
T ss_pred             eeEEEEeeCCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEeccC-cEEEEEEechhhhhhhhHHHHHHHHHHH--
Confidence            4666665543333221      223455578889999999987766432 12222232221110        010111  


Q ss_pred             CCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       230 ~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      ..+..+.+++|+++|+++|.+|.++||+++|+|++|++  +||.||+|
T Consensus       373 ~~~~~i~~~~~va~IsvvG~gm~~~~gv~arif~aL~~--~nI~~I~q  418 (448)
T PRK09084        373 SQLCRVEVEEGLALVALIGNNLSKACGVAKRVFGVLEP--FNIRMICY  418 (448)
T ss_pred             hcCCeEEEECCeEEEEEECCCcccCcChHHHHHHHHHh--CCeEEEEE
Confidence            13567899999999999999999999999999999986  67888876

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=97.29  E-value=0.00073  Score=70.21  Aligned_cols=94  Identities=13%  Similarity=0.134  Sum_probs=64.0

Q ss_pred             cchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhc--cCCceeeEeecCeeEEEEecCCCCCchhHHHH
Q 023778          183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQII--DSPVKGFATIDNLALVNVEGTGMAGVPGTANA  260 (277)
Q Consensus       183 v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~--~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~  260 (277)
                      .+..+.+..+.+++|++...+....+ ....+.-...+.+......  ......+.+++++++|+++|.||.+++|+++|
T Consensus       332 g~~~~if~~l~~~~I~v~~i~~~~s~-~sis~~i~~~~~~~~~~~l~~~~~~~~i~v~~~~a~VsvVG~gm~~~~gv~~~  410 (810)
T PRK09466        332 LAQKELDQLLKRAQLRPLAVGVHPDR-QLLQLAYTSEVADSALKLLDDAALPGELKLREGLALVALVGAGVTRNPLHCHR  410 (810)
T ss_pred             hHHHHHHHHHHHCCCeEEEEEecCCC-cEEEEEEeHHHHHHHHHHHHhhcCCCcEEEeCCeEEEEEeCCCcccCccHHHH
Confidence            33457788899999997776543222 2223322211100000000  01236789999999999999999999999999


Q ss_pred             HHHHHHhCCCcEEEEeC
Q 023778          261 IFGAVKDVGANVIMISQ  277 (277)
Q Consensus       261 if~~L~~~~I~V~~isq  277 (277)
                      +|++|++++|++.+++|
T Consensus       411 ~f~aL~~~~I~ii~~~~  427 (810)
T PRK09466        411 FYQQLKDQPVEFIWQSE  427 (810)
T ss_pred             HHHHHHhCCCcEEEEeC
Confidence            99999999999988765

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=97.04  E-value=0.0011  Score=44.92  Aligned_cols=34  Identities=44%  Similarity=0.677  Sum_probs=30.3

Q ss_pred             eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      ++|+++|  +.+.+|+.+++|+.|.+++|++++++|
T Consensus         1 ~~v~v~~--~~~~~~~~~~i~~~L~~~~i~i~~i~~   34 (61)
T cd04891           1 AQVTIKG--VPDKPGVAAKIFSALAEAGINVDMIVQ   34 (61)
T ss_pred             CEEEEec--CCCCCcHHHHHHHHHHHcCCcEEEEEE
Confidence            4678876  578899999999999999999999886

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08841 aspartate kinase; Validated

Probab=96.91  E-value=0.0018  Score=62.04  Aligned_cols=83  Identities=11%  Similarity=-0.003  Sum_probs=56.5

Q ss_pred             HHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHH
Q 023778          186 PRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAV  265 (277)
Q Consensus       186 p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L  265 (277)
                      ++.+..+.+++|++.......   ....+.-+..+  .. .........+.+.+|+++|+++|.+|   ||+++|+|.+|
T Consensus       269 ~~i~~~l~~~~i~v~~i~~~~---~~~~~~v~~~~--~~-~~~~~~~~~i~~~~~~a~vsvVG~~~---~gv~~~~~~aL  339 (392)
T PRK08841        269 PSLTKQCQMLGIEVWNVIEEA---DRAQIVIKQDA--CA-KLKLVFDDKIRNSESVSLLTLVGLEA---NGMVEHACNLL  339 (392)
T ss_pred             HHHHHHHHHcCCCEEEEEecC---CcEEEEECHHH--HH-HHHHhCcccEEEeCCEEEEEEECCCC---hHHHHHHHHHH
Confidence            466777888999977664322   12222211110  00 00111233578899999999999975   99999999999


Q ss_pred             HhCCCcEEEEeC
Q 023778          266 KDVGANVIMISQ  277 (277)
Q Consensus       266 ~~~~I~V~~isq  277 (277)
                      ++++|+|.|++|
T Consensus       340 ~~~~I~i~~i~~  351 (392)
T PRK08841        340 AQNGIDVRQCST  351 (392)
T ss_pred             HhCCCCEEEEEC
Confidence            999999999986

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=96.89  E-value=0.0017  Score=45.94  Aligned_cols=35  Identities=40%  Similarity=0.615  Sum_probs=31.2

Q ss_pred             eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +++|+++|  +.+.+|+++++|+.|+++||++++++|
T Consensus         1 ~~~v~v~~--~~~~~g~~~~i~~~L~~~~I~i~~i~~   35 (75)
T cd04913           1 QAKITLRG--VPDKPGVAAKIFGALAEANINVDMIVQ   35 (75)
T ss_pred             CeEEEECC--CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence            36788876  678899999999999999999999986

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=96.83  E-value=0.0023  Score=45.68  Aligned_cols=34  Identities=18%  Similarity=0.316  Sum_probs=29.7

Q ss_pred             eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      ++|+|.+.-  +.||+++++|+.|++++|+|+||+|
T Consensus         2 ~~vtv~~~~--~~~~~~a~if~~La~~~InvDmI~~   35 (67)
T cd04914           2 TQIKVKAKD--NENDLQQRVFKALANAGISVDLINV   35 (67)
T ss_pred             eEEEEecCC--CCccHHHHHHHHHHHcCCcEEEEEe
Confidence            678888754  5699999999999999999999975

This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and

>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]

Probab=96.70  E-value=0.00049  Score=64.85  Aligned_cols=96  Identities=16%  Similarity=0.222  Sum_probs=63.4

Q ss_pred             cCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCC------Ccc-hhhccCCceeeEeecCeeEEEEecCCCC
Q 023778          180 GANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE------NED-EQIIDSPVKGFATIDNLALVNVEGTGMA  252 (277)
Q Consensus       180 g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~------~~~-~~~~~~~v~~i~~~~nia~Isvvg~gm~  252 (277)
                      |..++-.+.+....+.||.|-+..+..-. ..-.+.+.....      +++ ...+-..+..+.+.++.++|+++|. |.
T Consensus       405 ~q~GFLAkvFti~ek~~isVDvvaTSEV~-iSltL~~~~~~sreliq~~l~~a~eeL~ki~~vdll~~~sIiSLiGn-vq  482 (559)
T KOG0456|consen  405 GQHGFLAKVFTIFEKLGISVDVVATSEVS-ISLTLDPSKLDSRELIQGELDQAVEELEKIAVVDLLKGRSIISLIGN-VQ  482 (559)
T ss_pred             hhhhHHHHHHHHHHHhCcEEEEEEeeeEE-EEEecChhhhhhHHHHHhhHHHHHHHHHHhhhhhhhccchHHhhhhh-hh
Confidence            44555566677778888887776554311 111111111110      000 0011134556678899999999998 99


Q ss_pred             CchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          253 GVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       253 ~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      ...|++.|+|..|+++||||+||||
T Consensus       483 ~ss~i~~rmF~~l~e~giNvqMISQ  507 (559)
T KOG0456|consen  483 NSSGILERMFCVLAENGINVQMISQ  507 (559)
T ss_pred             hhhHHHHHHHHHHHhcCcceeeecc
Confidence            9999999999999999999999999

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=96.65  E-value=0.0068  Score=63.69  Aligned_cols=92  Identities=12%  Similarity=0.041  Sum_probs=60.0

Q ss_pred             CcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCC--Ccchhh---ccCCceeeEeecCeeEEEEecCCCCCchh
Q 023778          182 NVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE--NEDEQI---IDSPVKGFATIDNLALVNVEGTGMAGVPG  256 (277)
Q Consensus       182 ~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~--~~~~~~---~~~~v~~i~~~~nia~Isvvg~gm~~~~g  256 (277)
                      ..+..+.+..+.+++|++...+... ... |.........  +...+.   .-..+..+.+.+++++|+++|.||.+++|
T Consensus       336 ~g~~a~if~~la~~~I~Vd~I~sse-~si-s~~i~~~~~~~~~~~~~~l~~~l~~~~~i~~~~~va~ISvVG~gm~~~~g  413 (861)
T PRK08961        336 VGFLADVFTLFKKHGLSVDLISSSE-TNV-TVSLDPSENLVNTDVLAALSADLSQICRVKIIVPCAAVSLVGRGMRSLLH  413 (861)
T ss_pred             ccHHHHHHHHHHHcCCeEEEEEcCC-CEE-EEEEccccccchHHHHHHHHHHHhhcCcEEEeCCeEEEEEeCCCcccCcC
Confidence            4566678889999999987765432 111 2222221100  000000   01124567899999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEeC
Q 023778          257 TANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       257 v~a~if~~L~~~~I~V~~isq  277 (277)
                      +++|+|++|++.+|  .|++|
T Consensus       414 v~arif~aL~~~~I--~~i~~  432 (861)
T PRK08961        414 KLGPAWATFGAERV--HLISQ  432 (861)
T ss_pred             hHHHHHHHHhhcCe--EEEEC
Confidence            99999999998654  55554

>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]

Probab=96.28  E-value=0.0078  Score=58.46  Aligned_cols=118  Identities=13%  Similarity=0.068  Sum_probs=84.5

Q ss_pred             hhcHHHHHHHHHHHHHHCCCCeEEEccccce--eecCC--------CCCC----cCCCchHHHHHHHHHhhcCCCceEEe
Q 023778           41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVL--IVNPT--------SSNQ----VDPDFSESEKRLEKWFSQSPSNTIIA  106 (277)
Q Consensus        41 s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~--~~~~~--------~~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv  106 (277)
                      -+||.  ..-+...|+++|-.+++.++....  .++.+        .|+.    ..++    .++++.+++  .|.+|++
T Consensus       170 ~~~E~--n~~lv~nL~~~g~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd----~d~i~~l~~--~G~mp~L  241 (520)
T KOG2436|consen  170 VSLEA--NLNLVINLSQLGTRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVD----VDRIRHLLD--AGSMPLL  241 (520)
T ss_pred             chhhh--hhHHHHHHHHhhceeccccccccccceeecccccccccceeeeecccceec----hhhhhhhhh--CCCchhe
Confidence            46777  444888999999998888766322  11211        2221    2343    378888887  8899999


Q ss_pred             cCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHH
Q 023778          107 TGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM  176 (277)
Q Consensus       107 ~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l  176 (277)
                      ... +.+..|+++|+.   +|..|..+|..|+|+.++.++|+ |..-.     .+.+.++.++.+|...+
T Consensus       242 ~sl-a~TaSGqvlnvN---a~~~a~elA~~L~~~kli~l~d~-g~~l~-----e~ge~~S~l~l~~e~~~  301 (520)
T KOG2436|consen  242 RSL-AATASGQVLNVN---ADEVAGELALALGPDKLILLMDK-GRILK-----ENGEDISSLILQEEDAG  301 (520)
T ss_pred             hhh-cccCccceEEee---HHHHhhHHHhccCcceeEEeccc-ccccc-----cCcccccccccchhHhh
Confidence            885 889999999884   89999999999999999999997 44322     34556677766655554

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=95.86  E-value=0.0099  Score=44.94  Aligned_cols=35  Identities=29%  Similarity=0.374  Sum_probs=32.0

Q ss_pred             CeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       240 nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      ..++|+|.|.   ++||+.+.++++|+++|+||.=|||
T Consensus         2 ~~avITV~Gk---Dr~GIva~is~vLAe~~vNIldisQ   36 (90)
T COG3830           2 MRAVITVIGK---DRVGIVAAVSRVLAEHGVNILDISQ   36 (90)
T ss_pred             ceEEEEEEcC---CCCchhHHHHHHHHHcCCcEEEHHH
Confidence            4689999996   6999999999999999999998887

>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway

Probab=95.43  E-value=0.036  Score=40.22  Aligned_cols=35  Identities=17%  Similarity=0.187  Sum_probs=31.8

Q ss_pred             eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEe
Q 023778          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS  276 (277)
Q Consensus       242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~is  276 (277)
                      ..|.|.+.+|.+.+|+.+++|+.|+++++++.+..
T Consensus         2 ~alevfdqdMvG~~g~d~~i~~~l~~~~v~ii~K~   36 (71)
T cd04910           2 FALEVFDQDMVGEVGYDLEILELLQRFKVSIIAKD   36 (71)
T ss_pred             eEEEEeCCCccCChhHHHHHHHHHHHcCCeEEEEe
Confidence            45789999999999999999999999999998754

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=94.94  E-value=0.017  Score=39.88  Aligned_cols=27  Identities=30%  Similarity=0.391  Sum_probs=24.6

Q ss_pred             CCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          251 MAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       251 m~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +.++||+++++++.|+++||||..+.|
T Consensus         7 ~~drpG~l~~v~~~la~~~inI~~~~~   33 (66)
T PF01842_consen    7 VPDRPGILADVTEILADHGINIDSISQ   33 (66)
T ss_dssp             EETSTTHHHHHHHHHHHTTEEEEEEEE
T ss_pred             cCCCCCHHHHHHHHHHHcCCCHHHeEE
Confidence            558999999999999999999998864

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=92.59  E-value=0.17  Score=36.48  Aligned_cols=32  Identities=25%  Similarity=0.497  Sum_probs=27.7

Q ss_pred             EEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       243 ~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +|++.|.   ++||+.+++.+.|+++|+||.=++|
T Consensus         1 ~vtv~G~---DrpGiv~~vt~~la~~~~nI~dl~~   32 (75)
T cd04870           1 LITVTGP---DRPGLTSALTEVLAAHGVRILDVGQ   32 (75)
T ss_pred             CEEEEcC---CCCCHHHHHHHHHHHCCCCEEeccc
Confidence            3788885   6999999999999999999986654

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=91.25  E-value=0.34  Score=36.05  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=29.4

Q ss_pred             eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      ...+++.|.   ++||+++++.+.|+++|+||.-++|
T Consensus         3 ~~~ltv~g~---DrpGiva~vt~~la~~g~nI~~~~~   36 (90)
T PRK00194          3 KAIITVIGK---DKVGIIAGVSTVLAELNVNILDISQ   36 (90)
T ss_pred             eEEEEEEcC---CCCCHHHHHHHHHHHcCCCEEehhh
Confidence            357888886   5999999999999999999987764

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=90.94  E-value=0.43  Score=34.74  Aligned_cols=32  Identities=28%  Similarity=0.465  Sum_probs=28.4

Q ss_pred             EEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       243 ~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +|++.|.   ++||+.+++.+.|+++|.||.-++|
T Consensus         3 iltv~g~---Dr~GiVa~vs~~la~~g~nI~d~~q   34 (77)
T cd04893           3 VISALGT---DRPGILNELTRAVSESGCNILDSRM   34 (77)
T ss_pred             EEEEEeC---CCChHHHHHHHHHHHcCCCEEEcee
Confidence            5788886   6999999999999999999987765

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=90.86  E-value=0.28  Score=34.87  Aligned_cols=31  Identities=23%  Similarity=0.399  Sum_probs=26.1

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       244 Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +.+..   .++||.++++++.|+++|++|.+++|
T Consensus         3 l~i~~---~d~~g~l~~I~~~la~~~inI~~i~~   33 (76)
T cd04888           3 LSLLL---EHRPGVLSKVLNTIAQVRGNVLTINQ   33 (76)
T ss_pred             EEEEe---cCCCchHHHHHHHHHHcCCCEEEEEe
Confidence            44554   35799999999999999999999875

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=90.79  E-value=0.32  Score=35.27  Aligned_cols=33  Identities=27%  Similarity=0.456  Sum_probs=26.4

Q ss_pred             eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      .+|++.|.   ++||+.++++++|+++|.||.=+.|
T Consensus         3 ~vItv~G~---DrpGiv~~v~~~l~~~g~ni~d~~~   35 (76)
T PF13740_consen    3 LVITVVGP---DRPGIVAAVTGVLAEHGCNIEDSRQ   35 (76)
T ss_dssp             EEEEEEEE-----TTHHHHHHHHHHCTT-EEEEEEE
T ss_pred             EEEEEEec---CCCcHHHHHHHHHHHCCCcEEEEEE
Confidence            57899996   6999999999999999999876654

>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=89.93  E-value=0.36  Score=35.48  Aligned_cols=34  Identities=12%  Similarity=0.140  Sum_probs=30.4

Q ss_pred             eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEE
Q 023778          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMI  275 (277)
Q Consensus       242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~i  275 (277)
                      +.|++....|....||..|+++.|+++||+++.+
T Consensus         2 ~~I~i~K~~Mn~evGF~rk~L~I~E~~~is~Eh~   35 (76)
T cd04911           2 CSIYISKYLMNREVGFGRKLLSILEDNGISYEHM   35 (76)
T ss_pred             ceEehhHhhccchhcHHHHHHHHHHHcCCCEeee
Confidence            4567778889999999999999999999999876

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=89.79  E-value=0.52  Score=35.03  Aligned_cols=33  Identities=24%  Similarity=0.399  Sum_probs=28.8

Q ss_pred             eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      ..|++.|.   ++||+++++.+.|+++|+||.-++|
T Consensus         2 ~vl~i~g~---D~pGiva~vt~~la~~g~nI~~~~~   34 (88)
T cd04872           2 AVITVVGK---DRVGIVAGVSTKLAELNVNILDISQ   34 (88)
T ss_pred             EEEEEEcC---CCCCHHHHHHHHHHHcCCCEEechh
Confidence            46788886   5999999999999999999987765

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=89.29  E-value=0.63  Score=33.27  Aligned_cols=32  Identities=22%  Similarity=0.442  Sum_probs=27.6

Q ss_pred             EEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       243 ~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +|++.|.   ++||+++++.+.|+++|+||.-++|
T Consensus         1 ii~v~g~---D~~Giv~~it~~l~~~g~nI~~~~~   32 (74)
T cd04875           1 ILTLSCP---DRPGIVAAVSGFLAEHGGNIVESDQ   32 (74)
T ss_pred             CEEEEcC---CCCCHHHHHHHHHHHcCCCEEeeee
Confidence            3678875   6999999999999999999987654

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=88.25  E-value=0.95  Score=31.58  Aligned_cols=25  Identities=20%  Similarity=0.438  Sum_probs=22.3

Q ss_pred             CCCchhHHHHHHHHHHhCCCcEEEE
Q 023778          251 MAGVPGTANAIFGAVKDVGANVIMI  275 (277)
Q Consensus       251 m~~~~gv~a~if~~L~~~~I~V~~i  275 (277)
                      +.+.||.++++.+.|+++||||.-+
T Consensus         8 v~d~pG~La~v~~~l~~~~inI~~i   32 (66)
T cd04908           8 LENKPGRLAAVTEILSEAGINIRAL   32 (66)
T ss_pred             EcCCCChHHHHHHHHHHCCCCEEEE
Confidence            5689999999999999999999643

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>PRK04435 hypothetical protein; Provisional

Probab=86.37  E-value=1.2  Score=36.83  Aligned_cols=37  Identities=16%  Similarity=0.349  Sum_probs=30.8

Q ss_pred             ecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          238 IDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       238 ~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      ....+.|.+..   .+.||+++++++.|+++|+||..|+|
T Consensus        66 ~~r~vtL~i~l---~Dr~GlLs~Il~~IA~~~aNIltI~q  102 (147)
T PRK04435         66 KGKIITLSLLL---EDRSGTLSKVLNVIAEAGGNILTINQ  102 (147)
T ss_pred             CCcEEEEEEEE---ecCCCHHHHHHHHHHHcCCCeEEEEE
Confidence            44556677764   46899999999999999999999986

>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]

Probab=84.39  E-value=5.9  Score=35.83  Aligned_cols=68  Identities=24%  Similarity=0.289  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCc
Q 023778           47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS  126 (277)
Q Consensus        47 s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggs  126 (277)
                      ++..+++.|..+|++......     +-+        +.+...+.++.+.+  .-.+.|++|-+|.+.|           
T Consensus        22 Na~~la~~L~~~G~~v~~~~~-----VgD--------~~~~I~~~l~~a~~--r~D~vI~tGGLGPT~D-----------   75 (255)
T COG1058          22 NAAFLADELTELGVDLARITT-----VGD--------NPDRIVEALREASE--RADVVITTGGLGPTHD-----------   75 (255)
T ss_pred             hHHHHHHHHHhcCceEEEEEe-----cCC--------CHHHHHHHHHHHHh--CCCEEEECCCcCCCcc-----------
Confidence            467899999999999866432     111        23344566777766  4678888887887766           


Q ss_pred             hHHHHHHHHHhCcc
Q 023778          127 DFSAAIMGALLRAH  140 (277)
Q Consensus       127 D~~A~~lA~~l~A~  140 (277)
                      |.|+-.+|++||-+
T Consensus        76 DiT~e~vAka~g~~   89 (255)
T COG1058          76 DLTAEAVAKALGRP   89 (255)
T ss_pred             HhHHHHHHHHhCCC
Confidence            99999999999954

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=82.67  E-value=1.7  Score=29.05  Aligned_cols=25  Identities=20%  Similarity=0.404  Sum_probs=22.1

Q ss_pred             CCCchhHHHHHHHHHHhCCCcEEEE
Q 023778          251 MAGVPGTANAIFGAVKDVGANVIMI  275 (277)
Q Consensus       251 m~~~~gv~a~if~~L~~~~I~V~~i  275 (277)
                      +.+.||.++++++.|.++|+||.-+
T Consensus         5 ~~d~~G~l~~i~~~l~~~~inI~~~   29 (56)
T cd04889           5 VENKPGRLAEVTEILAEAGINIKAI   29 (56)
T ss_pred             eCCCCChHHHHHHHHHHcCCCEeeE
Confidence            4578999999999999999998644

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=81.95  E-value=2.5  Score=30.36  Aligned_cols=31  Identities=23%  Similarity=0.320  Sum_probs=26.4

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       244 Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      |++.|.   ++||+++++.+.|+++|+||.-++|
T Consensus         2 l~v~g~---D~~Giv~~it~~l~~~~~nI~~~~~   32 (81)
T cd04869           2 VEVVGN---DRPGIVHEVTQFLAQRNINIEDLST   32 (81)
T ss_pred             EEEEeC---CCCCHHHHHHHHHHHcCCCeEEeEe
Confidence            567775   5999999999999999999986653

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=81.62  E-value=0.86  Score=31.08  Aligned_cols=25  Identities=20%  Similarity=0.436  Sum_probs=22.3

Q ss_pred             CCCchhHHHHHHHHHHhCCCcEEEE
Q 023778          251 MAGVPGTANAIFGAVKDVGANVIMI  275 (277)
Q Consensus       251 m~~~~gv~a~if~~L~~~~I~V~~i  275 (277)
                      +.++||.++++++.|+++|+||..+
T Consensus         6 ~~d~pG~L~~i~~~l~~~~~nI~~i   30 (65)
T cd04882           6 VPDKPGGLHEILQILSEEGINIEYM   30 (65)
T ss_pred             eCCCCcHHHHHHHHHHHCCCChhhe
Confidence            5589999999999999999998654

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=80.19  E-value=2.8  Score=26.05  Aligned_cols=25  Identities=24%  Similarity=0.488  Sum_probs=22.1

Q ss_pred             CchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          253 GVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       253 ~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +.+|..+++++.|+++++++..+.+
T Consensus         7 ~~~~~l~~i~~~l~~~~~~i~~~~~   31 (60)
T cd02116           7 DRPGLLAKVLSVLAEAGINITSIEQ   31 (60)
T ss_pred             CCCchHHHHHHHHHHCCCcEEEEEe
Confidence            4789999999999999999987753

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	277
2hmf_A	469	Structure Of A Threonine Sensitive Aspartokinase Fr		1e-41
3c1n_C	473	Crystal Structure Of Allosteric Inhibition Threonin		1e-41
2j0x_A	449	Crystal Structure Of E. Coli Aspartokinase Iii In C		3e-26
2cdq_A	510	Crystal Structure Of Arabidopsis Thaliana Aspartate		3e-24
3tvi_A	446	Crystal Structure Of Clostridium Acetobutylicum Asp		4e-18
3l76_A	600	Crystal Structure Of Aspartate Kinase From Synechoc		2e-13
3ab4_A	421	Crystal Structure Of Feedback Inhibition Resistant		2e-13
3aaw_A	421	Crystal Structure Of Aspartate Kinase From Coryneba		2e-13
2ij9_A	219	Crystal Structure Of Uridylate Kinase From Archaeog		3e-04
3ek5_A	243	Unique Gtp-Binding Pocket And Allostery Of Ump Kina		6e-04

>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From Methanococcus Jannaschii Complexed With Mg-Adp And Aspartate Length = 469

Iteration: 1
 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/251 (39%), Positives = 138/251 (54%), Gaps = 13/251 (5%)
Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G  T    D+++  GE  S+ +L+  +R  G     ++  E  I+   +         E 
Sbjct: 114 GELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEV 173
Query: 89  EKRLEKWFSQS--PSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
           ++RL     +   P    + TGFI +T +   TTL R GSD+SAA++G  L A  + IWT
Sbjct: 174 KERLLPLLKEGIIP----VVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWT 229
Query: 147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFN 206
           DV GVY+ DPR V  A  +  LSY EA E++YFGA VLHPRTI P M   IPI+++N F 
Sbjct: 230 DVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFE 289
Query: 207 LSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVK 266
               G +I         D ++ DS VK  +TI N+AL+N+ G GM GV GTA  IF A+ 
Sbjct: 290 PESEGTLITN-------DMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALG 342
Query: 267 DVGANVIMISQ 277
           +   NVI+ISQ
Sbjct: 343 EEEVNVILISQ 353

>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition Threonine-Sensitive Aspartokinase From Methanococcus Jannaschii With L-Threonine Length = 473

Iteration: 1
 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/251 (39%), Positives = 138/251 (54%), Gaps = 13/251 (5%)
Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G  T    D+++  GE  S+ +L+  +R  G     ++  E  I+   +         E 
Sbjct: 115 GELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEV 174
Query: 89  EKRLEKWFSQS--PSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
           ++RL     +   P    + TGFI +T +   TTL R GSD+SAA++G  L A  + IWT
Sbjct: 175 KERLLPLLKEGIIP----VVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWT 230
Query: 147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFN 206
           DV GVY+ DPR V  A  +  LSY EA E++YFGA VLHPRTI P M   IPI+++N F 
Sbjct: 231 DVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFE 290
Query: 207 LSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVK 266
               G +I         D ++ DS VK  +TI N+AL+N+ G GM GV GTA  IF A+ 
Sbjct: 291 PESEGTLITN-------DMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALG 343
Query: 267 DVGANVIMISQ 277
           +   NVI+ISQ
Sbjct: 344 EEEVNVILISQ 354

>pdb|2J0X|A Chain A, Crystal Structure Of E. Coli Aspartokinase Iii In Complex With Lysine And Aspartate (T-State) Length = 449

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 127/248 (51%), Gaps = 14/248 (5%)
Query: 34  SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLE 93
           + TD +V HGEL S  +   ++R+  +  +W D R+V+  N     + +PD +   +   
Sbjct: 109 ALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTN-DRFGRAEPDIAALAELAA 167
Query: 94  KWFS-QSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY 152
                +     +I  GFI S      TTL R GSD++AA++   L A +V IWTDV G+Y
Sbjct: 168 LQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIY 227
Query: 153 SADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGI 212
           + DPR VS A  +  +++ EA EM+ FGA VLHP T++P +R DIP+ + +  +    G 
Sbjct: 228 TTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGT 287
Query: 213 MICRPPVDENEDEQIIDSPV-KGFATIDNLALVNVEGTGMAGVPGTANAIFG--AVKDVG 269
           ++C      N+ E   + P+ +  A   N  L+ +    M    G    +FG  A  ++ 
Sbjct: 288 LVC------NKTE---NPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNIS 338
Query: 270 ANVIMISQ 277
            ++I  S+
Sbjct: 339 VDLITTSE 346

>pdb|2CDQ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Aspartate Kinase Complexed With Lysine And S-Adenosylmethionine Length = 510

Iteration: 1
 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 12/240 (5%)
Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNP---TSSNQVDPDFSESEKRLE 93
           D++V  GE  S ++ AA +   G+  +  D  E+  +     T+ + ++  +    KRL 
Sbjct: 141 DYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLY 200
Query: 94  KWFSQSPSNTIIATGFIAST-PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY 152
             +   P+  I+ TGF+         TTL R GSD +A  +G  L   ++ +W DVDGV 
Sbjct: 201 DDWMHDPAVPIV-TGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVL 259
Query: 153 SADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGI 212
           + DP     A  +  L++ EA E++YFGA VLHP+++ P    +IP+ ++N +N   PG 
Sbjct: 260 TCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGT 319
Query: 213 MICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANV 272
           +I +          +  S +       N+ ++++  T M G  G    +F   +++G +V
Sbjct: 320 IITKT-------RDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISV 372

>pdb|3TVI|A Chain A, Crystal Structure Of Clostridium Acetobutylicum Aspartate Kinase (Caak): An Important Allosteric Enzyme For Industrial Amino Acids Production Length = 446

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 16/226 (7%)
Query: 22  FLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQV 81
           +L  V       + +D+    GE  +  +LA       ++ +++D  EV+  + +     
Sbjct: 95  YLEKVKKNIENGASSDYAASRGEYLNGVILAKY-----LNAEFIDAAEVIFFDKSGCFDE 149
Query: 82  DPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQ 141
              +   EK  EK  S    N  +  GF  S+ +    T  R GSD + +I+ A + A  
Sbjct: 150 KKSY---EKIKEKVLS---CNKAVIPGFYGSSFNGDVKTFSRGGSDVTGSIISAGVNADL 203
Query: 142 VTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVI 201
              WTDV G   ADPR V     +  +SY+E  E+SY GA VLH   I PV    IPI I
Sbjct: 204 YENWTDVSGFLXADPRIVENPKTISKISYKELRELSYXGATVLHEEAIFPVKDSGIPINI 263
Query: 202 RNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVE 247
           +N    S PG +I       +  ++I    + G A   N  ++ +E
Sbjct: 264 KNTNKPSDPGTLIL-----SDTHKEINLGTITGIAGKKNFTVIAIE 304

>pdb|3L76|A Chain A, Crystal Structure Of Aspartate Kinase From Synechocystis Length = 600

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
Query: 91  RLEKWFSQSPSNTIIATGF--IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
           RLE    +     ++  GF  I+S      TTL R GSD SA  + A L+A    I+TDV
Sbjct: 120 RLEHHLREG--KVVVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDV 177
Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
            G+ + DPR V EA ++  ++  E  E++  GA VLHPR +     Y IP+V+R+ ++  
Sbjct: 178 PGILTTDPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWS-D 236
Query: 209 VPGIMICRPPV 219
            PG  +  PPV
Sbjct: 237 EPGTKVVAPPV 247

>pdb|3AB4|A Chain A, Crystal Structure Of Feedback Inhibition Resistant Mutant Of Aspartate Kinase From Corynebacterium Glutamicum In Complex With Lysine And Threonine Length = 421

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 7/159 (4%)
Query: 119 TTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY 178
           TTL R GSD +A  + A L A    I++DVDGVY+ADPR V  A  L  LS++E  E++ 
Sbjct: 147 TTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAA 206
Query: 179 FGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATI 238
            G+ +L  R++     +++P+ +R+ ++ + PG +I        ED  + ++ + G AT 
Sbjct: 207 VGSKILVLRSVEYARAFNVPLRVRSSYS-NDPGTLIA----GSMEDIPVEEAVLTGVATD 261
Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
            + A V V   G++  PG A  +F A+ D   N+ M+ Q
Sbjct: 262 KSEAKVTV--LGISDKPGEAAKVFRALADAEINIDMVLQ 298

>pdb|3AAW|A Chain A, Crystal Structure Of Aspartate Kinase From Corynebacterium Glutamicum In Complex With Lysine And Threonine Length = 421

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 7/159 (4%)
Query: 119 TTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY 178
           TTL R GSD +A  + A L A    I++DVDGVY+ADPR V  A  L  LS++E  E++ 
Sbjct: 147 TTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAA 206
Query: 179 FGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATI 238
            G+ +L  R++     +++P+ +R+ ++ + PG +I        ED  + ++ + G AT 
Sbjct: 207 VGSKILVLRSVEYARAFNVPLRVRSSYS-NDPGTLIA----GSMEDIPVEEAVLTGVATD 261
Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
            + A V V   G++  PG A  +F A+ D   N+ M+ Q
Sbjct: 262 KSEAKVTV--LGISDKPGEAAKVFRALADAEINIDMVLQ 298

>pdb|2IJ9|A Chain A, Crystal Structure Of Uridylate Kinase From Archaeoglobus Fulgidus Length = 219

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 43/167 (25%)
Query: 10  ELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTRE 69
           +L+ E+I+S            A+E+F D++                   GI    ++   
Sbjct: 43  KLAREYIKSAREL-------GASETFCDYI-------------------GIAATRLNAML 76
Query: 70  VLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFS 129
           ++   P+++ +V  DF E+E+ L K +       ++  G           T     +D +
Sbjct: 77  LISAIPSAAKKVPVDFMEAEE-LSKLY-----RVVVMGG-----------TFPGHTTDAT 119
Query: 130 AAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM 176
           AA++   ++A      T+VDGVYSADP+  + AV    LS Q+  E+
Sbjct: 120 AALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEI 166

>pdb|3EK5|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From A Gram- Negative Phytopathogen Bacterium Length = 243

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 134 GALLRAHQVTI-----WTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRT 188
           GA LRA ++        T VDGVY  DP+K S+AV   +L+Y E       G  V+    
Sbjct: 148 GAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIMQ---GLEVMDTAA 204
Query: 189 IIPVMRYDIPIVIRNIFNLSVPGIMI 214
                  D+P+    IF +S PG+++
Sbjct: 205 FALARDSDLPL---RIFGMSEPGVLL 227

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	277
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	1e-104
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	2e-05
2j0w_A	449	Lysine-sensitive aspartokinase 3; feedback inhibit	2e-99
2j0w_A	449	Lysine-sensitive aspartokinase 3; feedback inhibit	1e-05
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	1e-92
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	7e-04
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	7e-92
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	6e-36
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	9e-36
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	2e-11
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	1e-05
2brx_A	244	Uridylate kinase; UMP kinase, amino acid kinase, p	3e-11
2j4j_A	226	Uridylate kinase; transferase, nucleoside monophos	5e-11
4a7w_A	240	Uridylate kinase; transferase; HET: GTP; 1.80A {He	9e-11
2ogx_B	270	Molybdenum storage protein subunit beta; open alph	6e-10
2ogx_A	276	Molybdenum storage protein subunit alpha; open alp	2e-09
2ij9_A	219	Uridylate kinase; structural genomics, protein str	3e-09
3nwy_A	281	Uridylate kinase; allosterically activated form, A	4e-09
2va1_A	256	Uridylate kinase; UMPK, transferase, pyrimidine bi	2e-08
3ek6_A	243	Uridylate kinase; UMPK unique GTP B site, alloster	2e-08
1ybd_A	239	Uridylate kinase; alpha/beta/alpha fold, hexamer,	9e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
2a1f_A	247	Uridylate kinase; PYRH, structural genomics, PSI,	2e-07
1z9d_A	252	Uridylate kinase, UK, UMP kinase; structural genom	3e-07
2jjx_A	255	Uridylate kinase, UMP kinase; structural genomics,	2e-06
3ll9_A	269	Isopentenyl phosphate kinase; mevalonate biosynthe	7e-06
3ll5_A	249	Gamma-glutamyl kinase related protein; alternate m	4e-05
2j5v_A	367	Glutamate 5-kinase; proline biosynthesis, gamma gl	8e-04

>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* Length = 449

 Score =  297 bits (762), Expect = 2e-99
 Identities = 75/255 (29%), Positives = 123/255 (48%), Gaps = 10/255 (3%)

Query: 23  LSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVD 82
           L+   +   + + TD +V HGEL S  +   ++R+  +  +W D R+V+  N       +
Sbjct: 98  LAEAAALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGR-AE 156

Query: 83  PDFSESEKRLEKWFSQSPSNTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQ 141
           PD +   +          +  + I  GFI S      TTL R GSD++AA++   L A +
Sbjct: 157 PDIAALAELAALQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASR 216

Query: 142 VTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVI 201
           V IWTDV G+Y+ DPR VS A  +  +++ EA EM+ FGA VLHP T++P +R DIP+ +
Sbjct: 217 VDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFV 276

Query: 202 RNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAI 261
            +  +    G ++C    +            +  A   N  L+ +    M    G    +
Sbjct: 277 GSSKDPRAGGTLVCNKTENPP--------LFRALALRRNQTLLTLHSLNMLHSRGFLAEV 328

Query: 262 FGAVKDVGANVIMIS 276
           FG +     +V +I+
Sbjct: 329 FGILARHNISVDLIT 343

>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* Length = 449

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 238 IDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
            + LALV + G  ++   G    +FG ++    N+ MI  
Sbjct: 383 EEGLALVALIGNDLSKACGVGKEVFGVLEPF--NIRMICY 420

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 Length = 510

 Score =  281 bits (722), Expect = 1e-92
 Identities = 64/251 (25%), Positives = 114/251 (45%), Gaps = 10/251 (3%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
              T    D++V  GE  S ++ AA +   G+  +  D  E+  +        D   +  
Sbjct: 133 KELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATY 192

Query: 89  EKRLEKWFSQ--SPSNTIIATGFIAST-PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIW 145
               ++ +          I TGF+         TTL R GSD +A  +G  L   ++ +W
Sbjct: 193 PAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVW 252

Query: 146 TDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIF 205
            DVDGV + DP     A  +  L++ EA E++YFGA VLHP+++ P    +IP+ ++N +
Sbjct: 253 KDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSY 312

Query: 206 NLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAV 265
           N   PG +I        +   +  S +       N+ ++++  T M G  G    +F   
Sbjct: 313 NPKAPGTIIT-------KTRDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIF 365

Query: 266 KDVGANVIMIS 276
           +++G +V +++
Sbjct: 366 EELGISVDVVA 376

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 Length = 510

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 238 IDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
           +   A++++ G  +          F  +   G NV MISQ
Sbjct: 417 LKGRAIISLIG-NVQHSSLILERAFHVLYTKGVNVQMISQ 455

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum} Length = 446

 Score =  278 bits (712), Expect = 7e-92
 Identities = 65/257 (25%), Positives = 107/257 (41%), Gaps = 16/257 (6%)

Query: 21  NFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ 80
            +L  V       + +D+    GE  +  +LA       ++ +++D  EV+  + +    
Sbjct: 94  YYLEKVKKNIENGASSDYAASRGEYLNGVILAKY-----LNAEFIDAAEVIFFDKSGC-- 146

Query: 81  VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAH 140
              D  +S +++++       N  +  GF  S+ +    T  R GSD + +I+ A + A 
Sbjct: 147 --FDEKKSYEKIKEKVL--SCNKAVIPGFYGSSFNGDVKTFSRGGSDVTGSIISAGVNAD 202

Query: 141 QVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIV 200
               WTDV G   ADPR V     +  +SY+E  E+SY GA VLH   I PV    IPI 
Sbjct: 203 LYENWTDVSGFLMADPRIVENPKTISKISYKELRELSYMGATVLHEEAIFPVKDSGIPIN 262

Query: 201 IRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANA 260
           I+N    S PG +I      E          + G A   N  ++ +E   +    G    
Sbjct: 263 IKNTNKPSDPGTLILSDTHKEIN-----LGTITGIAGKKNFTVIAIEKALLNSEVGFCRK 317

Query: 261 IFGAVKDVGANVIMISQ 277
           I   ++  G +   +  
Sbjct: 318 ILSILEMYGVSFEHMPS 334

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A Length = 421

 Score =  131 bits (333), Expect = 6e-36
 Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 10/176 (5%)

Query: 104 IIATGF--IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSE 161
            I  GF  +     ++ TTL R GSD +A  + A L A    I++DVDGVY+ADPR V  
Sbjct: 131 CIVAGFQGVNKETRDV-TTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPN 189

Query: 162 AVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE 221
           A  L  LS++E  E++  G+ +L  R++     +++P+ +R+ ++ + PG +I       
Sbjct: 190 AQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYS-NDPGTLIA----GS 244

Query: 222 NEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
            ED  + ++ + G AT  + A V V   G++  PG A  +F A+ D   N+ M+ Q
Sbjct: 245 MEDIPVEEAVLTGVATDKSEAKVTV--LGISDKPGEAAKVFRALADAEINIDMVLQ 298

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600

 Score =  133 bits (337), Expect = 9e-36
 Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 6/177 (3%)

Query: 104 IIATGF--IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSE 161
           ++  GF  I+S      TTL R GSD SA  + A L+A    I+TDV G+ + DPR V E
Sbjct: 131 VVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPE 190

Query: 162 AVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE 221
           A ++  ++  E  E++  GA VLHPR +     Y IP+V+R+ ++   PG  +  PPV  
Sbjct: 191 AQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWS-DEPGTKVVAPPVQN 249

Query: 222 NEDEQIIDSP-VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
                +  +  V G     + A V +    +   PG A+ +F  +     ++ +I Q
Sbjct: 250 RSLVGLEIAKAVDGVEYDADQAKVAL--LRVPDRPGVASKLFRDIAQQQVDIDLIIQ 304

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis} Length = 157

 Score = 59.9 bits (146), Expect = 2e-11
 Identities = 7/49 (14%), Positives = 17/49 (34%)

Query: 229 DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
              +K  A  D + ++ V+ +           +F   +     V M++ 
Sbjct: 6   KDCIKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVAT 54

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis} Length = 157

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 219 VDENEDEQIIDSPVKGFATID---NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMI 275
           +D +++   I   +     +    ++ ++ + G       G    I  A+K V   V MI
Sbjct: 63  IDNDKNLPDIVRALSDIGDVTVDKDMVIICIVGDMEWDNVGFEARIINALKGV--PVRMI 120

Query: 276 SQ 277
           S 
Sbjct: 121 SY 122

>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* Length = 244

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 13/96 (13%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           D  AA++   L+A  + + T+VDGVY+ADP+K   A  ++ +  +E  E+   G  +   
Sbjct: 140 DAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIV--GKGIEKA 197

Query: 187 RTIIPV--------MRYDIPIVIRNIFNLSVPGIMI 214
            +   +         R  I  +   +        + 
Sbjct: 198 GSSSVIDPLAAKIIARSGIKTI---VIGKEDAKDLF 230

>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* Length = 226

 Score = 60.1 bits (146), Expect = 5e-11
 Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 12/94 (12%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +   AA++     +  + + T+VDGVY  DPR  ++  ++  L+ Q+  ++     +V  
Sbjct: 119 TAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQ- 177

Query: 186 PRTIIPV--------MRYDIPIVIRNIFNLSVPG 211
             T   +         R  I ++   + N     
Sbjct: 178 AGTYELLDPLAIKIVERSKIRVI---VMNYRKLN 208

>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A* Length = 240

 Score = 59.5 bits (144), Expect = 9e-11
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +D +A +    + +  +   T VDG+Y  DP K  +A  L TLSY +A         V+ 
Sbjct: 144 TDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIG---DIEVMD 200

Query: 186 PRTIIPVMRYDIPIVIRNIFNLSVPG 211
              I       +PIV   + N+   G
Sbjct: 201 DTAISLAKDNKLPIV---VCNMFKKG 223

>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 270

 Score = 57.5 bits (139), Expect = 6e-10
 Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           D    ++       Q+    D DG+Y+A+P+   +A  +  +S  E         ++L  
Sbjct: 170 DAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKG-LHDSILEF 228

Query: 187 R--TIIPVMRYDIPIVIRNIFNLSVPG 211
               ++   ++   +    + N  VPG
Sbjct: 229 PVLDLLQSAQHVREVQ---VVNGLVPG 252

>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 276

 Score = 55.7 bits (134), Expect = 2e-09
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 6/113 (5%)

Query: 102 NTIIATGFIASTPDNIPTTLKRDGS-DFSAAIMGALLRAHQVTIWTDVDGVYSADPR--K 158
             ++ + F        P +       D  A ++     A  +TI  +VDG+Y+ADP    
Sbjct: 145 RAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPD 204

Query: 159 VSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG 211
             +A  L   S  +  +             ++   R+   +    + N  VPG
Sbjct: 205 RGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQ---VVNGLVPG 254

>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3 Length = 219

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM------SYF 179
           +D +AA++   ++A      T+VDGVYSADP+  + AV    LS Q+  E+         
Sbjct: 116 TDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAG 175

Query: 180 GANVLHPRTIIPVMRYDIPIVI 201
              V+       + R  I   +
Sbjct: 176 TNVVIDLLAAKIIERSKIKTYV 197

>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} Length = 281

 Score = 55.0 bits (132), Expect = 4e-09
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +D +AA     + A  V +   VDGV++ DPR   EA +L  +S++E  +    G  V  
Sbjct: 185 TDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDR---GLRVAD 241

Query: 186 PRTIIPVMRYDIPIVIRNIFNLSVPG 211
                  M   +PI+   +FNL   G
Sbjct: 242 ATAFSLCMDNGMPIL---VFNLLTDG 264

>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} Length = 256

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 126 SDFSAAIMGALLRAHQVTIWTD-VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVL 184
           +D  AAI  A   +  + +  + VDGVY +DP+    A     +++  A         V+
Sbjct: 159 TDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMALTQ---NLKVM 215

Query: 185 HPRTIIPVMRYDIPIVIRNIFNLSVPG 211
               +      +I ++   +FN+  P 
Sbjct: 216 DATALALCQENNINLL---VFNIDKPN 239

>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} PDB: 3ek5_A Length = 243

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 37/179 (20%), Positives = 60/179 (33%), Gaps = 27/179 (15%)

Query: 33  ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRL 92
               D +     + +A  +   + K G                 S+ +++    +  +R 
Sbjct: 73  RVTGDHMGMLATVINALAMQDALEKLGAKV-----------RVMSAIKINDVCEDFIRRR 121

Query: 93  EKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY 152
                +     I A G                  D  AA+    + A  +   T VDGVY
Sbjct: 122 AIRHLEKGRIAIFAAGTGNPFFTT----------DSGAALRAIEIGADLLLKATKVDGVY 171

Query: 153 SADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG 211
             DP+K S+AV   +L+Y E       G  V+           D+P+    IF +S PG
Sbjct: 172 DKDPKKHSDAVRYDSLTYDEVIMQ---GLEVMDTAAFALARDSDLPLR---IFGMSEPG 224

>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 Length = 239

 Score = 50.7 bits (121), Expect = 9e-08
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +D +AA+ GA +    +   T+VDGVY+ADP+K   A    T+++ EA         V+ 
Sbjct: 143 TDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLK---NLKVMD 199

Query: 186 PRTIIPVMRYDIPIVIRNIFNLSVPG 211
                      + IV   +F ++  G
Sbjct: 200 ATAFALCRERKLNIV---VFGIAKEG 222

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 1e-07
 Identities = 29/206 (14%), Positives = 62/206 (30%), Gaps = 60/206 (29%)

Query: 44  ELWSAQMLAAVVRKNGIDCK-WMDTREVLIVN--------PTSSNQVDPDFSESEKR--L 92
            + +A+   A      + CK  + TR   + +          S +      +  E +  L
Sbjct: 252 NVQNAKAWNAF----NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 93  EKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTI--WTDVDG 150
            K+                  P ++P  +    +    +I+   +R    T   W  V+ 
Sbjct: 308 LKYLDCR--------------PQDLPREVL-TTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 151 VYSADPRKVSEAVILRTLSYQEAWEM-SYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSV 209
                  K++  +I  +L+  E  E    F          + V      I          
Sbjct: 353 ------DKLTT-IIESSLNVLEPAEYRKMFDR--------LSVFPPSAHI---------- 387

Query: 210 PGIMICR--PPVDENEDEQIIDSPVK 233
           P I++      V +++   +++   K
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHK 413

>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* Length = 247

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +D +A + G  + A  V   T VDGVY  DP K  +A + + LSY E  +       V+ 
Sbjct: 144 TDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDK---ELKVMD 200

Query: 186 PRTIIPVMRYDIPIVIRNIFNLSVPG 211
                    + +PI    +FN+  PG
Sbjct: 201 LSAFTLARDHGMPIR---VFNMGKPG 223

>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 Length = 252

 Score = 49.2 bits (117), Expect = 3e-07
 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 7/87 (8%)

Query: 126 SDFSAAIMGALLRAHQVTIWTD-VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVL 184
           +D +AA+  A + A  + +  + VDGVY+ADP+K + AV    L++ E  +    G  ++
Sbjct: 143 TDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKR---GLKIM 199

Query: 185 HPRTIIPVMRYDIPIVIRNIFNLSVPG 211
                   M  DI +V   +FN++  G
Sbjct: 200 DATASTLSMDNDIDLV---VFNMNEAG 223

>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis} Length = 255

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 126 SDFSAAIMGALLRAHQVTIWTD-VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVL 184
           +D+ +      + +  + +    VDGV+++DP+    A + R L+Y +          V+
Sbjct: 149 TDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---NIQVM 205

Query: 185 HPRTIIPVMRYDIPIVIRNIFNLSVPG 211
               ++    Y++P     +FN   PG
Sbjct: 206 DQAALLLARDYNLPAH---VFNFDEPG 229

>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 269

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 130 AAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM 176
                  L   +V + TDVDGVY+ +P+K  +A +L  +   +  E 
Sbjct: 164 INHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLES 210

>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* Length = 249

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 130 AAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWE-MSYFG 180
            A M  LL+       TDVDG+YS DP++  +AV+LR +     ++ +    
Sbjct: 151 MADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDIDTNITFDRVQNDV 202

>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A Length = 367

 Score = 39.4 bits (93), Expect = 8e-04
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 130 AAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRT 167
           +A+   L  A ++ + TD  G+Y+ADPR   +A +++ 
Sbjct: 153 SALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKD 190

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	277
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	100.0
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	100.0
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	100.0
2j0w_A	449	Lysine-sensitive aspartokinase 3; feedback inhibit	100.0
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	100.0
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	100.0
1ybd_A	239	Uridylate kinase; alpha/beta/alpha fold, hexamer,	99.93
3ek6_A	243	Uridylate kinase; UMPK unique GTP B site, alloster	99.92
2a1f_A	247	Uridylate kinase; PYRH, structural genomics, PSI,	99.92
2jjx_A	255	Uridylate kinase, UMP kinase; structural genomics,	99.92
2j4j_A	226	Uridylate kinase; transferase, nucleoside monophos	99.92
4a7w_A	240	Uridylate kinase; transferase; HET: GTP; 1.80A {He	99.92
1z9d_A	252	Uridylate kinase, UK, UMP kinase; structural genom	99.91
2ap9_A	299	NAG kinase, acetylglutamate kinase, AGK; structura	99.91
2j5v_A	367	Glutamate 5-kinase; proline biosynthesis, gamma gl	99.91
3nwy_A	281	Uridylate kinase; allosterically activated form, A	99.9
3ll9_A	269	Isopentenyl phosphate kinase; mevalonate biosynthe	99.89
2ogx_A	276	Molybdenum storage protein subunit alpha; open alp	99.89
2brx_A	244	Uridylate kinase; UMP kinase, amino acid kinase, p	99.89
2va1_A	256	Uridylate kinase; UMPK, transferase, pyrimidine bi	99.88
2egx_A	269	Putative acetylglutamate kinase; struc genomics, N	99.88
2ako_A	251	Glutamate 5-kinase; structural genomics, PSI, prot	99.88
3d40_A	286	FOMA protein; fosfomycin, antibiotic resistance, k	99.87
2ij9_A	219	Uridylate kinase; structural genomics, protein str	99.87
2rd5_A	298	Acetylglutamate kinase-like protein; protein-prote	99.86
1gs5_A	258	Acetylglutamate kinase; carbamate kinase, amino ac	99.86
2v5h_A	321	Acetylglutamate kinase; amino-acid biosynthesis, t	99.85
2ogx_B	270	Molybdenum storage protein subunit beta; open alph	99.85
2bty_A	282	Acetylglutamate kinase; N-acetyl-L-glutamate kinas	99.84
3ll5_A	249	Gamma-glutamyl kinase related protein; alternate m	99.82
2buf_A	300	Acetylglutamate kinase; acetyglutamate kinase, ADP	99.82
3l86_A	279	Acetylglutamate kinase; ARGB, amino-acid biosynthe	99.8
1e19_A	314	Carbamate kinase-like carbamoylphosphate synthetas	99.8
3k4o_A	266	Isopentenyl phosphate kinase; small molecule kinas	99.76
2e9y_A	316	Carbamate kinase; transferase, structural genomics	99.72
3d2m_A	456	Putative acetylglutamate synthase; protein-COA-Glu	99.7
3zzh_A	307	Acetylglutamate kinase; transferase, arginine bios	99.69
2we5_A	310	Carbamate kinase 1; arginine catabolism, arginine	99.67
4ab7_A	464	Protein Arg5,6, mitochondrial; transferase, argini	99.65
3kzf_A	317	Carbamate kinase; arginine dihydrolase pathway, gi	99.62
3s6g_A	460	N-acetylglutamate kinase / N-acetylglutamate SYNT;	99.61
3s6k_A	467	Acetylglutamate kinase; synthase, transferase; 2.8	99.5
4axs_A	332	Carbamate kinase; oxidoreductase; 2.50A {Mycoplasm	99.34
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	98.69
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	98.59
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	98.53
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	98.53
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	98.46
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	98.32
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	98.31
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	98.15
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	98.14
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	98.09
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	98.08
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	98.01
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	97.92
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	97.8
2j0w_A	449	Lysine-sensitive aspartokinase 3; feedback inhibit	97.42
2f06_A	144	Conserved hypothetical protein; structural genomic	96.51
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	89.11
3kbq_A	172	Protein TA0487; structural genomics, CINA, protein	82.37
2nyi_A	195	Unknown protein; protein structure initiative, PSI	81.89
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	81.53

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=100.00  E-value=2.7e-52  Score=405.58  Aligned_cols=255  Identities=27%  Similarity=0.466  Sum_probs=227.8

Q ss_pred             HHHHHHHHHHHhhhc-----CCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCC---c
Q 023778           14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPD---F   85 (277)
Q Consensus        14 ~~i~~~~~~L~~~~~-----~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~---~   85 (277)
                      +.++..++.|++++.     ++++++.+|+++|+||++|+.+++.+|+++|++|+++++.++.+++++.+++.+++   +
T Consensus       113 ~~i~~~~~~l~~~l~~~~~~~~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi~A~~l~~~~~~l~t~~~~~~~~i~~~~~  192 (510)
T 2cdq_A          113 SVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATY  192 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCEECSCSTTCCBCTTHH
T ss_pred             HHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEhhHeeEEEecCCCccchhhHHH
Confidence            456677777777653     47889999999999999999999999999999999999999955666667665543   2


Q ss_pred             hHHHHHHHH-HhhcCCCceEEecCccccCC-CCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCe
Q 023778           86 SESEKRLEK-WFSQSPSNTIIATGFIASTP-DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAV  163 (277)
Q Consensus        86 ~~~~~~i~~-~l~~~~~~VpVv~G~i~~~~-~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~  163 (277)
                      ....+.+.+ +++  .+.|||++||+|.++ +|.++|+||||||++|+++|.+|+|+++++||||||||++|||.+|+|+
T Consensus       193 ~~~~~~l~~~Ll~--~g~IpVv~Gf~g~~~~~g~ittlgrGgsD~tAa~lA~~l~Ad~l~i~TDVdGVytaDPr~v~~A~  270 (510)
T 2cdq_A          193 PAVAKRLYDDWMH--DPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRAT  270 (510)
T ss_dssp             HHHHHHHHHHHHH--SCCEEEEESSEEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTTCTTCC
T ss_pred             HHHHHHHHHHHHh--CCcEEEEeCccccCCCCCceEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCcCCCCCCCCCCCE
Confidence            223455554 556  789999999999998 9999999999999999999999999999999999999999999999999


Q ss_pred             EEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeE
Q 023778          164 ILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLAL  243 (277)
Q Consensus       164 ~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~  243 (277)
                      +|++++|+|+.+|+++|+++|||+|+++|.++|||++|+|+++|+.+||+|.+....       ..+.+++|+.++|+++
T Consensus       271 ~I~~Is~~E~~ela~~Ga~vmh~~a~~~a~~~gIpv~I~n~~~p~~~GT~I~~~~~~-------~~~~v~gIa~~~~~~~  343 (510)
T 2cdq_A          271 PVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTIITKTRDM-------TKSILTSIVLKRNVTM  343 (510)
T ss_dssp             BCCEEEHHHHHHHHHHHSSCCCHHHHHHHHHHTCCEEEEETTSTTSCCEEEESCCCC-------TTCCEEEEEEEEEEEE
T ss_pred             EecEeCHHHHHHHHhcCcchhHHHHHHHHHHCCCeEEEEccCcCCCCCeEEeccccc-------cccccccccccCCeEE
Confidence            999999999999999999999999999999999999999999999999999875421       2347999999999999


Q ss_pred             EEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       244 Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      |+|.|.+|.+.+||++++|+.|+++||+|+||+|
T Consensus       344 I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~s  377 (510)
T 2cdq_A          344 LDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT  377 (510)
T ss_dssp             EEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred             EEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEEe
Confidence            9999999999999999999999999999999975

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=100.00  E-value=1.3e-50  Score=388.10  Aligned_cols=228  Identities=28%  Similarity=0.427  Sum_probs=205.4

Q ss_pred             hHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccC
Q 023778           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (277)
Q Consensus        34 ~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~  113 (277)
                      +..|+++|+||+||+++++.+|     ++.++++++++++++   +. ..+++.+.++++++++  .+.|||++||+|.+
T Consensus       107 ~~~D~lls~GE~lS~~lla~~l-----~a~~~~~~~~~~~~~---~~-~~~~~~~~~~l~~~l~--~~~v~Vv~Gf~g~~  175 (446)
T 3tvi_A          107 ASSDYAASRGEYLNGVILAKYL-----NAEFIDAAEVIFFDK---SG-CFDEKKSYEKIKEKVL--SCNKAVIPGFYGSS  175 (446)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHH-----TCEECCGGGTCBBCC------CBCHHHHHHHHHHHTT--TCSSEECCCSEEEC
T ss_pred             ccHHHHHHhHHHHHHHHHHHHh-----cceeECHHHheeeCC---CC-ceehHhhHHHHHHHHh--cCCeEEeeCceecC
Confidence            6789999999999999999996     599999999987765   22 3566778899999997  78999999999999


Q ss_pred             CCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHH
Q 023778          114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVM  193 (277)
Q Consensus       114 ~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~  193 (277)
                      ++|.++|+||||||++|+++|.+|+|+++++||||||||++|||++|+|++|++++|+|+.+|+++|+++|||+|+++|+
T Consensus       176 ~~g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a~~i~~is~~e~~ela~~Ga~vl~~~a~~~a~  255 (446)
T 3tvi_A          176 FNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTISKISYKELRELSYMGATVLHEEAIFPVK  255 (446)
T ss_dssp             TTSCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHTTTC----CCSTTTHHHH
T ss_pred             CCCCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCCeEcceeCHHHHHHHHhCCCCcchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEE
Q 023778          194 RYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVI  273 (277)
Q Consensus       194 ~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~  273 (277)
                      ++|||++|+|+++|+.+||+|.+....+.     ..+.+++|+.++|+++|+|.|.+|.+.||+++++|+.|++++|+|+
T Consensus       256 ~~~ipi~i~~~~~p~~~GT~i~~~~~~~~-----~~~~v~gIa~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd  330 (446)
T 3tvi_A          256 DSGIPINIKNTNKPSDPGTLILSDTHKEI-----NLGTITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFE  330 (446)
T ss_dssp             HSSCCEEEEETTBTTSCCEEEECTTTSCC-----CTTCCCEEEEEEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEE
T ss_pred             HcCCeEEEecCCCCCCCCEEEecCCcccc-----cCcceEEEEecCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEE
Confidence            99999999999999999999987653210     1137899999999999999999999999999999999999999999


Q ss_pred             EEeC
Q 023778          274 MISQ  277 (277)
Q Consensus       274 ~isq  277 (277)
                      ||+|
T Consensus       331 ~i~~  334 (446)
T 3tvi_A          331 HMPS  334 (446)
T ss_dssp             EBCE
T ss_pred             EEec
Confidence            9874

>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*

Probab=100.00  E-value=1.6e-50  Score=388.46  Aligned_cols=251  Identities=30%  Similarity=0.523  Sum_probs=220.3

Q ss_pred             HHHHHHHHHHhhh---cCCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHH
Q 023778           15 FIRSTYNFLSNVD---SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKR   91 (277)
Q Consensus        15 ~i~~~~~~L~~~~---~~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~   91 (277)
                      .++..++.|+.+.   .-..+++.+|+++|+||.+|+.+++.+|+++|++++++++.++ +.+++.|++.+++...+.+.
T Consensus        87 ~i~~~~~~l~~l~~~~~~~~~~~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~-l~t~~~~~~~~~~~~~~~~~  165 (449)
T 2j0w_A           87 EIERLLENITVLAEAAALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRFGRAEPDIAALAEL  165 (449)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGT-CBBCSCTTSCCBCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHh-eeecCCCCCccccHhHhHHH
Confidence            3455555553221   1133589999999999999999999999999999999999999 55666777766765443333


Q ss_pred             ----HHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEee
Q 023778           92 ----LEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRT  167 (277)
Q Consensus        92 ----i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~  167 (277)
                          ++.+++   +.|||++||+|.+++|.++|+||||||++|+++|.+|+|+++++||||||||++|||.+|+|++|++
T Consensus       166 ~~~~l~~l~~---~~IpVv~Gf~g~~~~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~DPr~~~~a~~i~~  242 (449)
T 2j0w_A          166 AALQLLPRLN---EGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDE  242 (449)
T ss_dssp             HHHHTHHHHH---HSEEEEESSEEECTTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESE
T ss_pred             HHHHHHHHhc---CCEEEEeCCeeeCCCCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccCCcCcCCCCCCCCCEEccC
Confidence                333333   3499999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEe
Q 023778          168 LSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVE  247 (277)
Q Consensus       168 is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvv  247 (277)
                      ++|+|+.+|+++|+++|||+|+++|.++|||++|+|+++|+.+||+|.+...        ..+.+++|+.++|+++|+|.
T Consensus       243 is~~e~~ela~~G~kvlh~~a~~~a~~~gi~v~I~~~~~p~~~GT~I~~~~~--------~~~~v~gIa~~~~~~~i~i~  314 (449)
T 2j0w_A          243 IAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNKTE--------NPPLFRALALRRNQTLLTLH  314 (449)
T ss_dssp             EEHHHHHHHHHTTCTTSCTTTHHHHHHHTCCEEEEESSCTTSCCEEEESCCS--------SCCSEEEEEEEEEEEEEEEC
T ss_pred             ccHHHHHHHHhcCCccchHHHHHHHHHCCCeEEEEECCCCCCCeeEEecccc--------cccccccceeeCCEEEEEEE
Confidence            9999999999999999999999999999999999999999999999987642        23579999999999999999


Q ss_pred             cCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          248 GTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       248 g~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      |.+|.+.+|+++++|+.|++++|+|+||+|
T Consensus       315 ~~~m~~~~g~~~~if~~l~~~~i~vd~i~s  344 (449)
T 2j0w_A          315 SLNMLHSRGFLAEVFGILARHNISVDLITT  344 (449)
T ss_dssp             CCSCSCHHHHHHHHTTTTTTTTCCCSEEEE
T ss_pred             ecCCCCccCHHHHHHHHHHHcCCCEEEEEe
Confidence            999999999999999999999999999975

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=100.00  E-value=5.2e-46  Score=354.76  Aligned_cols=237  Identities=27%  Similarity=0.402  Sum_probs=185.6

Q ss_pred             CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcc
Q 023778           31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (277)
Q Consensus        31 ~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i  110 (277)
                      .+++..|.++++||.+++.+++.+|+++|+++.++++.++.+++++.++..++.. ...+.++++++  .+.|||++||+
T Consensus        61 ~~~~~~d~~~a~Ge~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~~~~v~~-~~~~~i~~~l~--~g~ipVv~g~~  137 (421)
T 3ab4_A           61 PPAREMDMLLTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVD-VTPGRVREALD--EGKICIVAGFQ  137 (421)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECCCC------------------CCHHHHHHHHH--TTCEEEC----
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCCCeeech-hhHHHHHHHHh--CCCEEEEeCCc
Confidence            4578899999999999999999999999999999999998666665555433321 12378888888  88999999999


Q ss_pred             ccCCC-CCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHH
Q 023778          111 ASTPD-NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI  189 (277)
Q Consensus       111 ~~~~~-G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~  189 (277)
                      |.+++ |+++|+||||||++|+++|.+|+|++++|||||||||++||+.+|++++|++++|+|+.+|+++|++++||+|+
T Consensus       138 g~~~~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~el~~~Ga~v~~~~a~  217 (421)
T 3ab4_A          138 GVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVGSKILVLRSV  217 (421)
T ss_dssp             --------------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSCTTTSTTCCBCSEECHHHHHHHHHTTCCSSCHHHH
T ss_pred             CcCCCCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCCCCCCCCCeEccccCHHHHHHHHhcCCcCchHHHH
Confidence            99999 99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCC
Q 023778          190 IPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVG  269 (277)
Q Consensus       190 ~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~  269 (277)
                      .+|.++|||++|+|+++| .+||+|.+...+.    ....+.+++++.++|+++|+|.|  |.+.||+++++|+.|+++|
T Consensus       218 ~~a~~~gi~v~I~n~~~~-~~GT~I~~~~~~~----~~~~~~i~~i~~~~~~~~i~v~~--~~~~~g~~~~If~~La~~~  290 (421)
T 3ab4_A          218 EYARAFNVPLRVRSSYSN-DPGTLIAGSMEDI----PVEEAVLTGVATDKSEAKVTVLG--ISDKPGEAAKVFRALADAE  290 (421)
T ss_dssp             HHHHHTTCCEEEEESSSC-CCCEEECSCGGGS----CTTTCCCCEEEEECSEEEEEEEE--EESSTTHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCEEEecCcCC-CCCeEEEecCccc----ccccCccceEEeeCCEEEEEEec--cCCcccHHHHHHHHHHHcC
Confidence            999999999999999998 7999998751100    00235699999999999999998  7789999999999999999


Q ss_pred             CcEEEEeC
Q 023778          270 ANVIMISQ  277 (277)
Q Consensus       270 I~V~~isq  277 (277)
                      |+|+||+|
T Consensus       291 I~vd~I~q  298 (421)
T 3ab4_A          291 INIDMVLQ  298 (421)
T ss_dssp             CCCEEEEE
T ss_pred             CcEEEEEc
Confidence            99999986

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=100.00  E-value=1.8e-46  Score=371.61  Aligned_cols=242  Identities=27%  Similarity=0.403  Sum_probs=206.3

Q ss_pred             CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCc
Q 023778           30 HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGF  109 (277)
Q Consensus        30 ~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~  109 (277)
                      ..+++..|+++++||++|+.+++.+|+++|+++++++++++.+++++.+++.++.. ...+.++++++  .+.|||++||
T Consensus        60 ~~~~~~~d~l~s~Ge~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~~~~~~~-~~~~~i~~ll~--~g~IpVv~Gf  136 (600)
T 3l76_A           60 NPCRREMDMLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSRARILE-IRPDRLEHHLR--EGKVVVVAGF  136 (600)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC-------CCE-EEECCHHHHHT--TTCEEEEECE
T ss_pred             CCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCCCceecc-ccHHHHHHHHh--CCCEEEEECC
Confidence            34678889999999999999999999999999999999999877776665544332 11266888887  7899999999


Q ss_pred             cccCCCC--CceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHH
Q 023778          110 IASTPDN--IPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR  187 (277)
Q Consensus       110 i~~~~~G--~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~  187 (277)
                      +|.+++|  +++++||||||++|+++|.+|+|+++++||||||||++|||++|+|++|++++|+|+.+|+++|+++|||+
T Consensus       137 ~g~~~~g~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~ela~~G~~vm~p~  216 (600)
T 3l76_A          137 QGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPEAQLMAEITCDEMLELASLGAKVLHPR  216 (600)
T ss_dssp             EEC----CEEEECCCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHTGGGGTTTCCHH
T ss_pred             eecCCCCCEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCCCCCCCCCCeEeeEEcHHHHHHHHhCCCCccHHH
Confidence            9999999  89999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCC-CcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHH
Q 023778          188 TIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE-NEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVK  266 (277)
Q Consensus       188 a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~-~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~  266 (277)
                      |+++|.++|||++|+|+++ +.+||+|.+..... ........+.+++|+.++|+++|++.  +|.+.||+++++|+.|+
T Consensus       217 a~~~a~~~gipv~I~n~~~-~~~GT~I~~~~~~~~~~~~~~~~~~v~gi~~~~~~~~i~i~--~~~~~~g~~~~if~~La  293 (600)
T 3l76_A          217 AVEIARNYGIPLVVRSSWS-DEPGTKVVAPPVQNRSLVGLEIAKAVDGVEYDADQAKVALL--RVPDRPGVASKLFRDIA  293 (600)
T ss_dssp             HHHHHHHHTCCEEEEETTC-CSCCEEEECCCCCSCCCCCCBSSCSCCEEEEECCCEEEEEE--EEECSTTHHHHHHHHHH
T ss_pred             HHHHHHHCCCeEEEEECCC-CCCCeEEecCCccccccccccccCcceEEEeeCCEEEEEEe--CCCCcccHHHHHHHHHH
Confidence            9999999999999999998 47999998765310 00000134679999999999999998  68899999999999999


Q ss_pred             hCCCcEEEEeC
Q 023778          267 DVGANVIMISQ  277 (277)
Q Consensus       267 ~~~I~V~~isq  277 (277)
                      +++|+|+||+|
T Consensus       294 ~~~I~Vd~I~q  304 (600)
T 3l76_A          294 QQQVDIDLIIQ  304 (600)
T ss_dssp             HTTCCCCCEEB
T ss_pred             HcCCCEEEEEe
Confidence            99999999987

>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3

Probab=99.93  E-value=7.3e-25  Score=193.41  Aligned_cols=160  Identities=19%  Similarity=0.240  Sum_probs=132.1

Q ss_pred             hhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcccc
Q 023778           33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (277)
Q Consensus        33 ~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~  112 (277)
                      ++..+.+.+.|+.++++++.++|.+.|+++.++++.+...+++ .+    .+    .+.+ ++++  .+.|||++|+.+ 
T Consensus        71 ~~~~~~~~~~~~~~~~~l~~~~l~~~G~~~~~~~~~~~~~~~~-~~----~~----~~~~-~ll~--~g~ipVv~g~~g-  137 (239)
T 1ybd_A           71 RATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAE-TY----AR----PKAI-QYLE--EGKVVIFAAGTG-  137 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSSSCE-EC----CH----HHHH-HHHH--TTCEEEEESTTS-
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeeccccccc-ch----hH----HHHH-HHHh--CCcEEEEECCcc-
Confidence            3445667778999999999999999999999998877643321 11    11    1334 6777  889999987632 


Q ss_pred             CCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHH
Q 023778          113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPV  192 (277)
Q Consensus       113 ~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a  192 (277)
                          .    .++++|++|+++|.+|+|++++|||||||||++||+.+|+|++|++++++|+.++   |.++|||+++.+|
T Consensus       138 ----~----~~~~~D~~Aa~lA~~l~Ad~liilTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a  206 (239)
T 1ybd_A          138 ----N----PFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLK---NLKVMDATAFALC  206 (239)
T ss_dssp             ----S----TTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEEHHHHHHT---TCCSSCHHHHHHH
T ss_pred             ----C----CCCCcHHHHHHHHHhcCCCEEEEeeCCCccCCCCCCCCCCCeEccccCHHHHHHh---cccccCHHHHHHH
Confidence                1    1357899999999999999999999999999999999999999999999999875   7899999999999


Q ss_pred             HhCCCcEEEEeccCCC---------CCeeEEeC
Q 023778          193 MRYDIPIVIRNIFNLS---------VPGIMICR  216 (277)
Q Consensus       193 ~~~~i~v~I~n~~~~~---------~~GT~I~~  216 (277)
                      .++|+|++|.|+++|+         ..||+|.+
T Consensus       207 ~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~~  239 (239)
T 1ybd_A          207 RERKLNIVVFGIAKEGSLKRVITGEDEGTLVHC  239 (239)
T ss_dssp             HHTTCCEEEECTTSTTHHHHHHHTCSCSEEEEC
T ss_pred             HHcCCcEEEEeCCChhHHHHHHcCCCCCeEEcC
Confidence            9999999999998763         56998864

>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A

Probab=99.92  E-value=3.8e-24  Score=189.91  Aligned_cols=182  Identities=20%  Similarity=0.207  Sum_probs=144.5

Q ss_pred             ccHHHHHHHHHHHHhhhc---------C--C-----------CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccc
Q 023778           11 LSYEFIRSTYNFLSNVDS---------G--H-----------ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (277)
Q Consensus        11 ~~~~~i~~~~~~L~~~~~---------~--~-----------~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~   68 (277)
                      ++.++++...+++.++.+         |  .           .+....|.+-.....+++.++..+|.+.|++++.+++.
T Consensus        29 ~~~~~i~~la~~i~~l~~~G~~vviV~gGG~~~~~~~~~~~g~~~~~~d~~g~l~t~~N~~~l~~al~~~G~~a~~~~~~  108 (243)
T 3ek6_A           29 IDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGAGLAASGMDRVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAI  108 (243)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEEECSTTTSCSTTTSCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechh
Confidence            567788777777766542         1  1           12233444433455788888999999999999999998


Q ss_pred             cceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeecc
Q 023778           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV  148 (277)
Q Consensus        69 ~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV  148 (277)
                      ++..+++      ..+    .+.+.++++  .|.|||++|+.     |..    ++++|++|+++|.+|+|+++++||||
T Consensus       109 ~~~~v~~------~~~----~~~~~~lL~--~g~IpVv~~~~-----g~~----~~~~D~~Aa~lA~~l~Ad~li~lTdV  167 (243)
T 3ek6_A          109 KINDVCE------DFI----RRRAIRHLE--KGRIAIFAAGT-----GNP----FFTTDSGAALRAIEIGADLLLKATKV  167 (243)
T ss_dssp             CBTTTBE------ECC----HHHHHHHHH--TTCEEEEESTT-----SST----TCCHHHHHHHHHHHHTCSEEEEECSS
T ss_pred             hcCcccC------cCC----HHHHHHHHH--CCcEEEEECCC-----CCC----cCChHHHHHHHHHHcCCCEEEEEeCC
Confidence            7643321      122    367888888  89999999842     221    25689999999999999999999999


Q ss_pred             ccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCC---------CCCeeEEeC
Q 023778          149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMICR  216 (277)
Q Consensus       149 ~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~~  216 (277)
                      ||||++||+++|+|+++++++++|+.+   .|.++|+++|+..|.++|+|++|+|+++|         +..||+|.+
T Consensus       168 dGvy~~dp~~~p~a~~i~~i~~~e~~~---~g~~~~~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~  241 (243)
T 3ek6_A          168 DGVYDKDPKKHSDAVRYDSLTYDEVIM---QGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG  241 (243)
T ss_dssp             SSCBSSCGGGCTTCCBCSEECHHHHHH---HTCCSSCHHHHHHHHHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred             CccCCCCCCCCCCceecccccHHHHHh---CCchhHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence            999999999999999999999999876   37889999999999999999999999765         357999976

>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*

Probab=99.92  E-value=1.2e-24  Score=193.40  Aligned_cols=182  Identities=18%  Similarity=0.204  Sum_probs=139.4

Q ss_pred             ccHHHHHHHHHHHHhhh---------cC-------------CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccc
Q 023778           11 LSYEFIRSTYNFLSNVD---------SG-------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (277)
Q Consensus        11 ~~~~~i~~~~~~L~~~~---------~~-------------~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~   68 (277)
                      ++.+.++...+++..+.         +|             ..+++..|.+.+.|+.+++++++++|.+.|+++.++++.
T Consensus        28 ~~~~~i~~~a~~I~~l~~~G~~vVlVhGgG~~~~~~~~~~~g~~~~~~d~~~~~~~~~~~~ll~~~l~~~G~~~~~~~~~  107 (247)
T 2a1f_A           28 IDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAF  107 (247)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCHHHHHHHHHHHHHHHHCCCeEEEEECCChHhcchhHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCCeEEeccc
Confidence            46677777777766543         21             134445677788999999999999999999999999987


Q ss_pred             cceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeecc
Q 023778           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV  148 (277)
Q Consensus        69 ~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV  148 (277)
                      +...+++ .       +  ....++++++  .+.|||++|+.     |.    .++++|++|+.+|.+|+|++++|||||
T Consensus       108 ~~~~~~~-~-------~--~~~~~~~ll~--~g~ipVi~~~~-----g~----~~~~~D~~Aa~lA~~l~Ad~liilTDV  166 (247)
T 2a1f_A          108 QLNGICD-T-------Y--NWSEAIKMLR--EKRVVIFSAGT-----GN----PFFTTDSTACLRGIEIEADVVLKATKV  166 (247)
T ss_dssp             CCTTTSE-E-------C--CHHHHHHHHH--TTCEEEEESTT-----SC----SSCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred             ccccccc-h-------h--hHHHHHHHHh--CCCEEEEeCCc-----CC----CCCCcHHHHHHHHHhCCCCEEEEEeCC
Confidence            7643221 1       1  1234577887  88999999842     22    235789999999999999999999999


Q ss_pred             ccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCC---------CCCeeEEeC
Q 023778          149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMICR  216 (277)
Q Consensus       149 ~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~~  216 (277)
                      ||||++||+++|++++|++++++|+.++   |.++|+|+++.+|.++|+|++|.|+++|         +..||+|..
T Consensus       167 dGvy~~dP~~~p~a~~i~~i~~~e~~~~---g~~~m~~~aa~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~  240 (247)
T 2a1f_A          167 DGVYDCDPAKNPDAKLYKNLSYAEVIDK---ELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICE  240 (247)
T ss_dssp             SSCBCC-------CCBCSEECHHHHHHT---TCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEECC
T ss_pred             CcccCCCCCCCCCCeEcccCCHHHHHHc---CccccCHHHHHHHHHcCCcEEEEeCCCchHHHHHHcCCCCceEEee
Confidence            9999999999999999999999999875   7899999999999999999999999765         357999964

>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}

Probab=99.92  E-value=2.2e-24  Score=192.59  Aligned_cols=151  Identities=18%  Similarity=0.293  Sum_probs=126.7

Q ss_pred             cHHHHHHHHHHHHHH-CCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceec
Q 023778           43 GELWSAQMLAAVVRK-NGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTL  121 (277)
Q Consensus        43 Ge~~s~~ll~~~L~~-~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~l  121 (277)
                      +..+++.+++.+|.+ .|+++.++++.++..+++      ..+    ...+.++++  .+.|||++|  + ++++.++  
T Consensus        86 ~~~~~~~ll~~~l~~~~Gi~a~~l~~~~~~~v~~------~~~----~~~~~~lL~--~g~IpVi~g--g-~g~~~vt--  148 (255)
T 2jjx_A           86 GTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAE------PYI----RLRAVHHLD--NGYIVIFGG--G-NGQPFVT--  148 (255)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCEEEEESSCCCSSSE------ECC----HHHHHHHHH--TTCEEEEES--T-TSCSSCC--
T ss_pred             HHHHHHHHHHHHHHhhcCCceEEecHHHcCcccC------ccc----HHHHHHHHh--CCcEEEEeC--C-CCCCccc--
Confidence            346888889999999 999999999988753332      112    234447887  889999998  3 3333333  


Q ss_pred             cCCCchHHHHHHHHHhCcceEEEee-ccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEE
Q 023778          122 KRDGSDFSAAIMGALLRAHQVTIWT-DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIV  200 (277)
Q Consensus       122 grggsD~~A~~lA~~l~A~~l~i~t-DV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~  200 (277)
                          +|++|+.+|.+|+|++++||| ||||||++||+++|++++|++++|+|+.++   |.++|+|.|++++.++|+|++
T Consensus       149 ----tD~~Aa~lA~~l~Ad~liilT~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~---G~~~m~~~a~~~a~~~gi~v~  221 (255)
T 2jjx_A          149 ----TDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---NIQVMDQAALLLARDYNLPAH  221 (255)
T ss_dssp             ----SHHHHHHHHHHHTCSEEEEEESSCCSCBSSCTTTCSSCCBCSEEEHHHHHHT---TCCSSCHHHHHHHHHHTCCEE
T ss_pred             ----hHHHHHHHHHhcCCCEEEEEeCCcCeeECCCCCCCCCCeEeeEecHHHHHHc---CCccCHHHHHHHHHHcCCeEE
Confidence                499999999999999999999 999999999999999999999999998875   889999999999999999999


Q ss_pred             EEeccCCC---------CCeeEEeCC
Q 023778          201 IRNIFNLS---------VPGIMICRP  217 (277)
Q Consensus       201 I~n~~~~~---------~~GT~I~~~  217 (277)
                      |+|+++|+         ..||+|.++
T Consensus       222 I~~~~~~~~l~~~l~g~~~GT~I~~~  247 (255)
T 2jjx_A          222 VFNFDEPGVMRRICLGEHVGTLINDD  247 (255)
T ss_dssp             EEETTSTTHHHHHHBTCCCSEEEESS
T ss_pred             EEeCCCchHHHHHhcCCCCceEEecC
Confidence            99998873         689999874

>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*

Probab=99.92  E-value=1.8e-24  Score=189.62  Aligned_cols=150  Identities=19%  Similarity=0.233  Sum_probs=125.8

Q ss_pred             ChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccc
Q 023778           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (277)
Q Consensus        32 ~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~  111 (277)
                      ++...+.+.+.|+.+++.+++.+|+++|+++           +       ..+    .++++++++  .+.|||++|  +
T Consensus        60 ~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~-----------~-------~~~----~~~i~~ll~--~g~ipVi~g--g  113 (226)
T 2j4j_A           60 GEAYLDLLGIWASRLNAYLVMFSLQDLAYMH-----------V-------PQS----LEEFIQDWS--HGKVVVTGG--F  113 (226)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTTSBCSC-----------C-------CSS----HHHHHHHHT--TSSBEEECC--C
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHhCCCC-----------C-------cCC----HHHHHHHHH--CCCEEEEcC--C
Confidence            3456778889999999999999999999964           0       123    377888887  889999998  2


Q ss_pred             cCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhh-cCC------cc
Q 023778          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-GAN------VL  184 (277)
Q Consensus       112 ~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~-g~~------v~  184 (277)
                       ..        .+++|++|+.+|.+|+|++++|||||||||++||+++|++++|++++++|+.+++.. |.+      ++
T Consensus       114 -~~--------~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~l~~~~~~~~ggm~~~~  184 (226)
T 2j4j_A          114 -QP--------GQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELL  184 (226)
T ss_dssp             -ST--------TSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHHHC----------CCS
T ss_pred             -CC--------CCCcHHHHHHHHHhcCCCEEEEeeccceeeCCCCCCCCCCeEccccCHHHHHHHhhcCCCCcCCccccc
Confidence             11        356899999999999999999999999999999999999999999999999999543 555      88


Q ss_pred             hHHHHHHHHhCCCcEEEEeccCC---------CCCeeEEeC
Q 023778          185 HPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMICR  216 (277)
Q Consensus       185 ~p~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~~  216 (277)
                      |++++.+|.++|+|++|.|+++|         +..||+|.+
T Consensus       185 k~~a~~~a~~~gi~v~I~~~~~~~~l~~~~~g~~~GT~i~~  225 (226)
T 2j4j_A          185 DPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEP  225 (226)
T ss_dssp             CHHHHHHHHHTTCEEEEEEGGGGGGHHHHHTTCSSCEEEEC
T ss_pred             hHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEEee
Confidence            99999999999999999998765         357999975

>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*

Probab=99.92  E-value=5.8e-24  Score=188.38  Aligned_cols=180  Identities=18%  Similarity=0.223  Sum_probs=141.1

Q ss_pred             ccHHHHHHHHHHHHhhhc---------C--C------------CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEcc
Q 023778           11 LSYEFIRSTYNFLSNVDS---------G--H------------ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDT   67 (277)
Q Consensus        11 ~~~~~i~~~~~~L~~~~~---------~--~------------~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~   67 (277)
                      ++.++++...+++.++.+         |  .            .+....|.+-.....+++.+++++|.++|++++.+++
T Consensus        27 ~~~~~i~~~a~~I~~l~~~G~~vvlV~gGG~~~~g~~~~~~G~~~~~~~~~~~~la~~~n~~l~~~~l~~~G~~av~lt~  106 (240)
T 4a7w_A           27 IDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRGVSAAQGGIIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSA  106 (240)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEEECCTTTC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCHHHHHHHHHHHHHHHHCCCcEEEEECCcHHHhHhHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEecH
Confidence            567777777777765542         1  0            1111223332234678899999999999999999998


Q ss_pred             ccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeec
Q 023778           68 REVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD  147 (277)
Q Consensus        68 ~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tD  147 (277)
                      .++...+.      ..+    .+.+.++++  .+.|||++|+.     |..    .+++|++|+++|.+|+|+++++|||
T Consensus       107 ~d~~~~~~------~~~----~~~i~~lL~--~g~ipVi~~~~-----g~~----~~~~D~~Aa~lA~~l~Ad~li~lTd  165 (240)
T 4a7w_A          107 IEIKEICE------SYI----YRKAIRHLE--KGRVVIFGAGT-----GNP----FFTTDTAATLRAIEIGSDLIIKATK  165 (240)
T ss_dssp             SCCTTTSE------ECC----HHHHHHHHH--TTCEEEEESTT-----SCT----TSCHHHHHHHHHHHTTCSEEEEEES
T ss_pred             HHcCcccC------cCc----HHHHHHHHH--CCCEEEEeCCC-----CCC----CCChHHHHHHHHHHcCCCEEEEccC
Confidence            88743221      122    367788888  89999999852     221    1357999999999999999999999


Q ss_pred             cccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCC----------CCeeEE
Q 023778          148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS----------VPGIMI  214 (277)
Q Consensus       148 V~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~----------~~GT~I  214 (277)
                      |||||++||+.+|+|+++++++++|+.++   |.++|+++|+.+|.++|+|++|+|+++|+          ..||.|
T Consensus       166 VdGvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~g~GT~i  239 (240)
T 4a7w_A          166 VDGIYDKDPNKFKDAKKLDTLSYNDALIG---DIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMV  239 (240)
T ss_dssp             SSSEESSCTTTCTTCCEESEECHHHHHHS---SCCSSCHHHHHHHHHTTCCEEEEESSSTTHHHHHHHHSCSSCEEE
T ss_pred             CCceECCCCCCCCCCeEcceecHHHHHhc---CccccHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCceee
Confidence            99999999999999999999999998774   78999999999999999999999998763          468887

>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3

Probab=99.91  E-value=1.2e-23  Score=187.40  Aligned_cols=184  Identities=20%  Similarity=0.248  Sum_probs=145.5

Q ss_pred             ccHHHHHHHHHHHHhhh---------cC--C-----------CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccc
Q 023778           11 LSYEFIRSTYNFLSNVD---------SG--H-----------ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (277)
Q Consensus        11 ~~~~~i~~~~~~L~~~~---------~~--~-----------~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~   68 (277)
                      ++.+.++...++|..+.         +|  .           .+++..+.+.+.++.++++++..+|.+.|+++..+++.
T Consensus        27 ~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~~~~lg~~~~~~~~~~~~~~~~~~~ll~~al~~~G~~~~~~~~~  106 (252)
T 1z9d_A           27 IDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAI  106 (252)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccchHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecc
Confidence            45677777777776553         21  1           23333455566778889999999999999999999887


Q ss_pred             cceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEee-c
Q 023778           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT-D  147 (277)
Q Consensus        69 ~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~t-D  147 (277)
                      +...+.+ .+         ....+.++++  .+.|||++|+.     |.    .++++|++|+.+|.+|+|++++||| |
T Consensus       107 ~~~~~~~-~~---------~~~~~~~lL~--~g~IpVi~~~~-----g~----~~~~~D~~Aa~lA~~l~Ad~LiilT~D  165 (252)
T 1z9d_A          107 PMQNVAE-PY---------IRGRALRHLE--KNRIVVFGAGI-----GS----PYFSTDTTAALRAAEIEADAILMAKNG  165 (252)
T ss_dssp             CBTTTBE-EC---------CHHHHHHHHH--TTCEEEEESTT-----SC----TTCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred             ccccccC-cc---------hHHHHHHHHh--CCCEEEEeCCc-----CC----CCCChHHHHHHHHHhcCCCEEEEecCC
Confidence            6532221 11         1234477887  88999999832     22    2567999999999999999999999 9


Q ss_pred             cccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCC---------CCeeEEeCCC
Q 023778          148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS---------VPGIMICRPP  218 (277)
Q Consensus       148 V~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~---------~~GT~I~~~~  218 (277)
                      |||||++||+++|++++|++++++|+.+   .|.++|+++++..|.++|+|++|.|+++|+         ..||+|.+..
T Consensus       166 VdGvy~~dP~~~~~a~~i~~i~~~e~~~---~~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~  242 (252)
T 1z9d_A          166 VDGVYNADPKKDANAVKFDELTHGEVIK---RGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNKV  242 (252)
T ss_dssp             CCSCBSSCTTTCTTCCBCSEEEHHHHHT---TTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC-
T ss_pred             CCeeeCCCCCCCCCCeEeeEecHHHHHh---ccccccCHHHHHHHHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecCC
Confidence            9999999999999999999999999876   477899999999999999999999998774         6899998764

>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2

Probab=99.91  E-value=1.1e-23  Score=192.21  Aligned_cols=169  Identities=14%  Similarity=0.200  Sum_probs=137.0

Q ss_pred             HhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCC-c---CCCc-------hHHHHHHHHHhhcCCCceEEec
Q 023778           39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ-V---DPDF-------SESEKRLEKWFSQSPSNTIIAT  107 (277)
Q Consensus        39 v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~-~---~~~~-------~~~~~~i~~~l~~~~~~VpVv~  107 (277)
                      .++.|+. + ..+++.|.+.|++++++++.+..+++...++. .   .+++       ....+.++++++  .+.|||++
T Consensus       100 ~~~~G~l-~-~~l~~~L~~~g~~av~lt~~d~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~--~g~IpVv~  175 (299)
T 2ap9_A          100 MVLFGQV-G-RELVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVA--AGRIPVVS  175 (299)
T ss_dssp             HHHHHTH-H-HHHHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECHHHHHHHHH--TTCEEEEE
T ss_pred             HHHhhHH-H-HHHHHHHHhCCCCceEechhHCCEEEEEecccccccccCCCCcceeEEEecHHHHHHHHh--CCCeEEEC
Confidence            3447884 3 34899999999999999998864443222210 0   0110       012478889998  89999999


Q ss_pred             CccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHH
Q 023778          108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR  187 (277)
Q Consensus       108 G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~  187 (277)
                      |+ +.++.|+.+++   ++|++|+.+|.+|+|++++|||||||||++||+   ++++|++++++|+.+++.++.++|+|+
T Consensus       176 ~v-~~~~~G~~~~l---~~D~~Aa~lA~~l~Ad~liilTDVdGV~~~dP~---~~~~i~~is~~e~~~l~~~~~ggM~~K  248 (299)
T 2ap9_A          176 TL-APDADGVVHNI---NADTAAAAVAEALGAEKLLMLTDIDGLYTRWPD---RDSLVSEIDTGTLAQLLPTLELGMVPK  248 (299)
T ss_dssp             SE-EECTTCCEEEE---CHHHHHHHHHHHTTCSEEEEEESSSSEETTTTC---TTCEESEEEHHHHHHHGGGSCTTTHHH
T ss_pred             Ce-eECCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEeCChhhhcCCCC---CCcChhhcCHHHHHHHHHhhcCchHHH
Confidence            97 88899998887   599999999999999999999999999999998   579999999999999998889999996


Q ss_pred             --HHHHHHhCCCc-EEEEeccCCC----------CCeeEEeCCC
Q 023778          188 --TIIPVMRYDIP-IVIRNIFNLS----------VPGIMICRPP  218 (277)
Q Consensus       188 --a~~~a~~~~i~-v~I~n~~~~~----------~~GT~I~~~~  218 (277)
                        ++..+.++|+| ++|.|+++|+          ..||+|.+..
T Consensus       249 l~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~GT~i~~~~  292 (299)
T 2ap9_A          249 VEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVRGE  292 (299)
T ss_dssp             HHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEECCC
T ss_pred             HHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCcEEEecCC
Confidence              78889999999 9999997663          4699998753

>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A

Probab=99.91  E-value=6.2e-24  Score=198.91  Aligned_cols=170  Identities=16%  Similarity=0.215  Sum_probs=105.3

Q ss_pred             hHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccC
Q 023778           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (277)
Q Consensus        34 ~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~  113 (277)
                      ...+.+.+.|+..+++.+...|.++|+++..     +.+ +.+.+.. ...+....+.++++++  .+.|||+.+.    
T Consensus        70 ~~~qa~aavGq~~l~~~~~~~l~~~G~~~~q-----vll-t~~d~~~-~~r~~n~~~~i~~LL~--~g~IPIv~en----  136 (367)
T 2j5v_A           70 ASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQ-----MLL-TRADMED-RERFLNARDTLRALLD--NNVVPVINEN----  136 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTCCEEE-----EEE-CGGGGSS-HHHHHHHHHHHHHHHH--TTCEEEEEEC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCceEE-----EEE-ecccccC-ceEEEhHHHHHHHHHH--CCCEEEECCC----
Confidence            3566677899999999999999999999863     333 3222321 1222333467888888  8999999632    


Q ss_pred             CCCCcee--ccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCH--HHHHHHHh-----hcCCcc
Q 023778          114 PDNIPTT--LKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSY-----FGANVL  184 (277)
Q Consensus       114 ~~G~~~~--lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~--~e~~~l~~-----~g~~v~  184 (277)
                        +.+.+  +.+|++|++|+++|.+++|+.++|||||||||++||+++|++++|+++++  +|+.+++.     +|.++|
T Consensus       137 --d~v~~~el~~gd~D~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~~~s~~gtGgM  214 (367)
T 2j5v_A          137 --DAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGM  214 (367)
T ss_dssp             --TTSCCGGGCCCSHHHHHHHHHHHHTCSEEEEEECC------------------------------------------C
T ss_pred             --CceecccccCCCHHHHHHHHHHhcCCCEEEEeecCCceECCCCCCCCCCeEeeeeCCCHHHHHHHhhccCCCcCcCcc
Confidence              23333  56889999999999999999999999999999999999999999999999  89999865     477899


Q ss_pred             hH--HHHHHHHhCCCcEEEEeccCCC---------CCeeEEeCCC
Q 023778          185 HP--RTIIPVMRYDIPIVIRNIFNLS---------VPGIMICRPP  218 (277)
Q Consensus       185 ~p--~a~~~a~~~~i~v~I~n~~~~~---------~~GT~I~~~~  218 (277)
                      +|  +|+..|.++|+|++|.|+++|+         ..||+|.+..
T Consensus       215 ~~Kl~Aa~~a~~~Gv~v~I~~g~~~~~L~~~l~g~~~GT~i~~~~  259 (367)
T 2j5v_A          215 STKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQA  259 (367)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEETTSTTHHHHHHHTCCCSEEECCCS
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCCCchHHHHHhcCCCCcEEEEcCc
Confidence            99  6889999999999999998875         6899998754

>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}

Probab=99.90  E-value=9.8e-23  Score=184.25  Aligned_cols=181  Identities=20%  Similarity=0.262  Sum_probs=138.7

Q ss_pred             ccHHHHHHHHHHHHhhhc-----------C-----------CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccc
Q 023778           11 LSYEFIRSTYNFLSNVDS-----------G-----------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (277)
Q Consensus        11 ~~~~~i~~~~~~L~~~~~-----------~-----------~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~   68 (277)
                      ++.++++...+++.++.+           |           ..+....|.+-..++.+++.++.+.|.++|++++.+.+.
T Consensus        69 ld~~~i~~la~~I~~l~~~G~~vviV~GgG~i~~g~~~~~~gl~~~~~d~~g~lat~~n~~~l~~~L~~~Gi~a~~~~~~  148 (281)
T 3nwy_A           69 LDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAI  148 (281)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEEECCTTC---CCTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCHHHHHHHHHHHHHHHHCCCeEEEEECChhHhhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence            677788777777766542           1           122334566667788999999999999999999888777


Q ss_pred             cceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeecc
Q 023778           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV  148 (277)
Q Consensus        69 ~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV  148 (277)
                      +...+++ .|    .+    .+.+ ++++  .+.|||++|+.     |..    ++++|++|+++|.+|+|+.+++||||
T Consensus       149 ~~~~~~~-~~----~~----~~~l-~lL~--~g~IpVv~g~~-----g~~----~~~~D~~Aa~lA~~l~Ad~LiilTDV  207 (281)
T 3nwy_A          149 TMGQVAE-PY----LP----LRAV-RHLE--KGRVVIFGAGM-----GLP----YFSTDTTAAQRALEIGADVVLMAKAV  207 (281)
T ss_dssp             CCGGGSE-EC----CH----HHHH-HHHH--TTCEEEEESTT-----SST----TCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred             ccccccc-cc----ch----HHHH-HHHH--cCCeEEEECCC-----CCC----CCCHHHHHHHHHHHcCCCEEEEeecc
Confidence            6544332 11    11    2334 7787  89999999842     221    35789999999999999999999999


Q ss_pred             ccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCC---------CCCeeEEe
Q 023778          149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC  215 (277)
Q Consensus       149 ~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~  215 (277)
                      ||||++||+++|+|++|++++++|+.+   .|..+++++|+..|.++|+|++|+|+++|         +..||+|.
T Consensus       208 dGVy~~dP~~~p~A~~i~~is~~e~~~---~g~~v~k~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~  280 (281)
T 3nwy_A          208 DGVFAEDPRVNPEAELLTAVSHREVLD---RGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT  280 (281)
T ss_dssp             SSCBCC-----CCCCBCSEECHHHHHT---TTCCSSCHHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred             CccccCCCCcCCCCeEcccccHHHHHH---cCCCcHHHHHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence            999999999999999999999999854   47889999999999999999999999876         35799885

>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.89  E-value=5.7e-23  Score=184.91  Aligned_cols=156  Identities=16%  Similarity=0.168  Sum_probs=120.9

Q ss_pred             HHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCC--CCceeccCCCc
Q 023778           49 QMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD--NIPTTLKRDGS  126 (277)
Q Consensus        49 ~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~--G~~~~lgrggs  126 (277)
                      ..++++|.++|++++.+++.+..+++.+..  ..++.    +.++++++  .+.|||++||++.+.+  |++.++   ++
T Consensus        92 ~~l~~~L~~~G~~a~~l~g~~~~~~~~g~v--~~v~~----~~i~~lL~--~g~ipVi~~~~~~~~~~~g~~~~~---~~  160 (269)
T 3ll9_A           92 SHVCDALLAEGIPAVSMQPSAFIRAHAGRI--SHADI----SLIRSYLE--EGMVPVVYGDVVLDSDRRLKFSVI---SG  160 (269)
T ss_dssp             HHHHHHHHHTTCCEEECCGGGTEEEETTEE--EEECC----HHHHHHHH--TTCEEEEECEEEEBSCTTTSEEEE---CH
T ss_pred             HHHHHHHHHCCCcEEEEcchHcCeEecCee--eeecH----HHHHHHHH--CCCEEEECCCEEecccccCcceec---ch
Confidence            358999999999999999999866553211  23444    78899998  8999999999998888  888776   48


Q ss_pred             hHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHh-----hcCCcchHH--HHHHHHhCCCcE
Q 023778          127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY-----FGANVLHPR--TIIPVMRYDIPI  199 (277)
Q Consensus       127 D~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~-----~g~~v~~p~--a~~~a~~~~i~v  199 (277)
                      |++|+.+|.+|+|+++++||||||||++||+.+|++++|+++++.|+.++..     .+..+|.|+  ++..+.++|+++
T Consensus       161 D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~~~~~~~~tgGM~~Kl~aa~~a~~~Gv~v  240 (269)
T 3ll9_A          161 DQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLLAEKGVES  240 (269)
T ss_dssp             HHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC-------------------SHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhcccCCCcCcCCcHHHHHHHHHHHhCCCeE
Confidence            9999999999999999999999999999999999999999999999977643     345688885  567777899999


Q ss_pred             EEEeccCC---------CCC-eeEEe
Q 023778          200 VIRNIFNL---------SVP-GIMIC  215 (277)
Q Consensus       200 ~I~n~~~~---------~~~-GT~I~  215 (277)
                      +|.|++.|         +.. ||+|.
T Consensus       241 ~I~~g~~~~~l~~~~~g~~~~GT~i~  266 (269)
T 3ll9_A          241 EIINAAVPGNIERALLGEEVRGTRIT  266 (269)
T ss_dssp             EEEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred             EEEeCCCchHHHHHHCCCCCCcEEEE
Confidence            99998766         345 99886

>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}

Probab=99.89  E-value=5e-23  Score=185.94  Aligned_cols=159  Identities=17%  Similarity=0.171  Sum_probs=126.6

Q ss_pred             hhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcccc
Q 023778           33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (277)
Q Consensus        33 ~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~  112 (277)
                      +...+.+...++.++..+++..+...|++++.                    +....+.++++++  .+.|||++||++.
T Consensus        98 ~~~l~~v~~~~~~~n~~l~~~ll~~~g~~~v~--------------------~~~~~~~i~~lL~--~g~IpVi~~~~~~  155 (276)
T 2ogx_A           98 VGSLAPLAASEAGQNGHILAAMLASEGVSYVE--------------------HPTVADQLAIHLS--ATRAVVGSAFPPY  155 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGTCCBCC--------------------HHHHHHHHHHHHH--HSSEEEEESSCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--------------------ccChHHHHHHHHh--CCCEEEEcCCccc
Confidence            34455555666777777777776667765321                    1123467888888  7899999998776


Q ss_pred             CC--C-CCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCC--CCCCCeEEeeeCHHHHHHHHhhcCCcchHH
Q 023778          113 TP--D-NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPR--KVSEAVILRTLSYQEAWEMSYFGANVLHPR  187 (277)
Q Consensus       113 ~~--~-G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~--~~~~a~~i~~is~~e~~~l~~~g~~v~~p~  187 (277)
                      +.  . |..  +.++++|++|+.+|.+|+|++++|||||||||++||+  .+|++++|++++++|+.+++  |.++|+|+
T Consensus       156 ~~~e~~G~~--~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~~~~~~~a~~i~~i~~~e~~~~~--g~ggM~~K  231 (276)
T 2ogx_A          156 HHHEFPGSR--IPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSE--GPLPVDRA  231 (276)
T ss_dssp             GGGCCSSSS--SCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTTSTTGGGCCEESEEEHHHHHTSC--SCCSSCHH
T ss_pred             ccccccCCc--CCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCccCCCCCeEcceeCHHHHHHHh--CcCChHHH
Confidence            62  2 222  2346799999999999999999999999999999999  89999999999999999887  78999999


Q ss_pred             HHHHHH--hCCCcEEEEeccCC---------CCCeeEEeCC
Q 023778          188 TIIPVM--RYDIPIVIRNIFNL---------SVPGIMICRP  217 (277)
Q Consensus       188 a~~~a~--~~~i~v~I~n~~~~---------~~~GT~I~~~  217 (277)
                      +...+.  +++++++|.|+++|         +..||+|.+.
T Consensus       232 ~~~~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  272 (276)
T 2ogx_A          232 LLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTG  272 (276)
T ss_dssp             HHHHHHTCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEECS
T ss_pred             HHHHHHHhcCCCeEEEEECCCccHHHHHHcCCCCceEEccC
Confidence            988888  55889999999877         5689999864

>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*

Probab=99.89  E-value=1e-22  Score=180.72  Aligned_cols=150  Identities=24%  Similarity=0.269  Sum_probs=124.1

Q ss_pred             ChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccc
Q 023778           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (277)
Q Consensus        32 ~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~  111 (277)
                      ++...+.+.+.|+.+++.++...|.+.|+++      +            .++    .+.+.++++  .+.|||++|   
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~------~------------~~~----~~~i~~lL~--~g~IpVi~g---  132 (244)
T 2brx_A           80 SETFKDFIGIQITRANAMLLIAALREKAYPV------V------------VED----FWEAWKAVQ--LKKIPVMGG---  132 (244)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHGGGBCSS------C------------BCS----HHHHHHHHH--TTCBCEECC---
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHcCCCC------C------------cCC----HHHHHHHHh--CCCEEEEcC---
Confidence            4456677788899999999999999999754      0            123    266788888  899999998   


Q ss_pred             cCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhh-cC-----Ccch
Q 023778          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-GA-----NVLH  185 (277)
Q Consensus       112 ~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~-g~-----~v~~  185 (277)
                          |..    .+++|++|+.+|.+|+|++++|||||||||++||+++|++++|++++++|+.+++.. |.     .+++
T Consensus       133 ----g~~----~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~a~~i~~i~~~e~~~~~~~~g~~~g~m~~~~  204 (244)
T 2brx_A          133 ----THP----GHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVID  204 (244)
T ss_dssp             ----CST----TCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------CCSC
T ss_pred             ----CCC----CCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeeEECHHHHHHHHhccCCCCCCCcchH
Confidence                221    246799999999999999999999999999999999999999999999999998543 43     7889


Q ss_pred             HHHHHHHHhCCCcEEEEeccCC---------CCCeeEEeC
Q 023778          186 PRTIIPVMRYDIPIVIRNIFNL---------SVPGIMICR  216 (277)
Q Consensus       186 p~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~~  216 (277)
                      +.|++.+.+.++|++|.|+++|         +..||+|.+
T Consensus       205 ~~A~~~~~~~~~~v~I~ng~~~~~l~~~l~g~~~GT~i~~  244 (244)
T 2brx_A          205 PLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP  244 (244)
T ss_dssp             HHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEECC
T ss_pred             HHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEecC
Confidence            9999999999999999998654         357999853

>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}

Probab=99.88  E-value=4e-22  Score=178.05  Aligned_cols=181  Identities=14%  Similarity=0.168  Sum_probs=130.0

Q ss_pred             ccHHHHHHHHHHHHhhh--------cC--C-----------CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEcccc
Q 023778           11 LSYEFIRSTYNFLSNVD--------SG--H-----------ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTRE   69 (277)
Q Consensus        11 ~~~~~i~~~~~~L~~~~--------~~--~-----------~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~   69 (277)
                      ++.+.++...++|..+.        +|  .           .++...+..-..+..+++.++.++|.+.|+++..+....
T Consensus        44 ~~~~~i~~~a~~i~~l~~g~~vVlVhGgG~~~~~~~~~~~g~~~~~~~~~~~l~~~~n~~l~~~~l~~~Gi~a~~~~~~t  123 (256)
T 2va1_A           44 IDFIKINDLAEQIEKISKKYIVSIVLGGGNIWRGSIAKELDMDRNLADNMGMMATIINGLALENALNHLNVNTIVLSAIK  123 (256)
T ss_dssp             SCHHHHHHHHHHHHHHTTTSEEEEEECCTTTCCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEEECCcHHhccchHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeee
Confidence            45677777777776642        21  1           112223333344557778888999999999999887654


Q ss_pred             ceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeec-c
Q 023778           70 VLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD-V  148 (277)
Q Consensus        70 ~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tD-V  148 (277)
                      ..     .+.+..     ....+.++++  .+.|||++|.     .|.    .++++|++|+.+|.+|+|++++|||| |
T Consensus       124 ~~-----~~~~~~-----~~~~~~~lL~--~g~IpVi~~~-----~g~----~~~~~D~~Aa~lA~~l~Ad~LiilTD~V  182 (256)
T 2va1_A          124 CD-----KLVHES-----SANNIKKAIE--KEQVMIFVAG-----TGF----PYFTTDSCAAIRAAETESSIILMGKNGV  182 (256)
T ss_dssp             CT-----TTCEEC-----CHHHHHHHHH--TTCEEEEEST-----TSS----SSCCHHHHHHHHHHHHTCSEEEEEESSC
T ss_pred             cc-----cccchh-----hHHHHHHHHh--CCcEEEEECC-----CCC----CCCChhHHHHHHHHhCCCCEEEEeeccc
Confidence            32     221111     1233467887  8999999982     232    24678999999999999999999999 9


Q ss_pred             ccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCC---------CCCeeEEe
Q 023778          149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC  215 (277)
Q Consensus       149 ~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~  215 (277)
                      ||||++||+++|++++|++++++|+.++   +.++|+++|+..|.++|+|++|.|+++|         +..||+|.
T Consensus       183 dGVy~~dP~~~p~a~~i~~is~~e~~~~---~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~  255 (256)
T 2va1_A          183 DGVYDSDPKINPNAQFYEHITFNMALTQ---NLKVMDATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS  255 (256)
T ss_dssp             CSBCSCC--------CBSEEEHHHHHHH---TCCSSCHHHHHHHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred             CeEEcCCCCCCCCCEEccEEcHHHHHHh---ccCCccHHHHHHHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence            9999999999999999999999999887   4678899999999999999999999766         35799885

>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3

Probab=99.88  E-value=8.1e-23  Score=181.71  Aligned_cols=159  Identities=13%  Similarity=0.149  Sum_probs=120.4

Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCC
Q 023778           36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD  115 (277)
Q Consensus        36 ~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~  115 (277)
                      .+.+.+.|+....+.+..+|.++|+++..+      ..+.+.+.. ...+....+.++.+++  .+.|||++|+-+... 
T Consensus        65 ~~~l~~~~q~~l~~~~~~~l~~~G~~~~~i------~~~~~~~~~-~~~~~~~~~~i~~ll~--~g~ipVi~~~d~v~~-  134 (251)
T 2ako_A           65 KQVLAAIGQPFLISVYNELLAKFNKLGGQI------LLTGKDFDS-RKATKHAKNAIDMMIN--LGILPIINENDATAI-  134 (251)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTCCEEEE------EECTGGGGC-HHHHHHHHHHHHHHHH--TTCEEEEEECTTTCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcEEEE------EeccchhcC-cceEehHHHHHHHHHH--CCCEEEEeCCCceee-
Confidence            467888999999999999999999998643      223222211 1111122367888887  889999986411111 


Q ss_pred             CCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHH--HHHHHHh-----hcCCcchH--
Q 023778          116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ--EAWEMSY-----FGANVLHP--  186 (277)
Q Consensus       116 G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~--e~~~l~~-----~g~~v~~p--  186 (277)
                      ++.   .++++|++|+.+|.+|+|++++|||||||||++||+++|++++|++++++  |+.+++.     ++.++|.|  
T Consensus       135 ~~~---~~~~~D~~Aa~lA~~l~Ad~liilTdVdGVy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~~ggm~~k~  211 (251)
T 2ako_A          135 EEI---VFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKL  211 (251)
T ss_dssp             HHH---HBTTTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHH
T ss_pred             cce---eecCchHHHHHHHHhcCCCEEEEEeCCCceeeCCCCCCCCCeEeeEeccchHHHHHHhcccCCCCccCchHHHH
Confidence            112   35789999999999999999999999999999999999999999999998  9988865     56777776  


Q ss_pred             HHHHHHHhCCCcEEEEeccCC
Q 023778          187 RTIIPVMRYDIPIVIRNIFNL  207 (277)
Q Consensus       187 ~a~~~a~~~~i~v~I~n~~~~  207 (277)
                      +|+..|.++|+|++|.|+++|
T Consensus       212 ~aa~~a~~~gv~v~I~~g~~~  232 (251)
T 2ako_A          212 KAAKFLLEHNKKMFLASGFDL  232 (251)
T ss_dssp             HHHHHHHHTTCEEEEEESSSC
T ss_pred             HHHHHHHHCCCeEEEEeCCCh
Confidence            588999999999999998665

>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*

Probab=99.87  E-value=2e-22  Score=182.90  Aligned_cols=156  Identities=13%  Similarity=0.035  Sum_probs=123.1

Q ss_pred             HHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCC
Q 023778           38 FVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNI  117 (277)
Q Consensus        38 ~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~  117 (277)
                      ...+.|+......+...|.++|+++..+.+.+..++.+   +...++.    +.++++++  .+.|||++|+++.+.+|+
T Consensus        93 ~~~~vt~g~l~~~l~~~l~~~G~~a~~l~~~~~~~t~d---g~~~~~~----~~i~~lL~--~g~IpVi~gd~~~~~~g~  163 (286)
T 3d40_A           93 AGLTEATFEVKKRWAEKLRGIGVDAFPLQLAAMCTLRN---GIPQLRS----EVLRDVLD--HGALPVLAGDALFDEHGK  163 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTEEEET---TEEEECC----SHHHHHHH--TTCEEEEECEEEEBTTSC
T ss_pred             hcchhhHHHHHHHHHHHHHHcCCcEEEEEeecCCcccC---CeEEehH----HHHHHHHH--CcCEEEEcCCeEEcCCCC
Confidence            34566666678899999999999999998876653222   1112222    57888888  899999999888888887


Q ss_pred             ceeccCCCchHHHHHHHHH-hCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHh--------hcCCcchH--
Q 023778          118 PTTLKRDGSDFSAAIMGAL-LRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY--------FGANVLHP--  186 (277)
Q Consensus       118 ~~~lgrggsD~~A~~lA~~-l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~--------~g~~v~~p--  186 (277)
                      +.   ++++|++|+++|.+ |+|++++|||||||||++||+   ++++|+++++.|+.++..        ++.++|+|  
T Consensus       164 ~~---~~~~D~~Aa~lA~~~l~Ad~LiilTDVdGVy~~dP~---~a~~i~~is~~e~~~l~~~~~~~~~~~~tggM~~Kl  237 (286)
T 3d40_A          164 LW---AFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAG---GDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKL  237 (286)
T ss_dssp             EE---EECGGGHHHHTTTTCCSCEEEEEEESSSSCEECC------CEECCEEETTSCHHHHHHHHHSCC----CHHHHHH
T ss_pred             EE---eeCHHHHHHHHHHhhCCCCEEEEecCCCeeEcCCCC---CCcCCcccCHHHHHHHHHhhccccCCcccCcHHHHH
Confidence            53   45799999999999 999999999999999999998   899999999987766632        35689999  


Q ss_pred             HHHHHHHhCCCcEEEEeccCCC
Q 023778          187 RTIIPVMRYDIPIVIRNIFNLS  208 (277)
Q Consensus       187 ~a~~~a~~~~i~v~I~n~~~~~  208 (277)
                      +|+..+.++|+|++|.|+++|+
T Consensus       238 ~Aa~~a~~~gv~v~I~~g~~p~  259 (286)
T 3d40_A          238 DALVTCARRGAECFIMRGDPGS  259 (286)
T ss_dssp             HHHHHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHCCCcEEEEeCCCCC
Confidence            5889999999999999998764

>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3

Probab=99.87  E-value=1.9e-21  Score=169.37  Aligned_cols=147  Identities=24%  Similarity=0.277  Sum_probs=118.7

Q ss_pred             ChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccc
Q 023778           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (277)
Q Consensus        32 ~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~  111 (277)
                      ++...+.+.+.++.+++.++...|... +             ..     ..++    .+.++++++  .+.|||++|   
T Consensus        58 ~~~~l~~~~~~~~~~~~~l~~~~~~~~-~-------------~~-----~~~~----~~~i~~ll~--~g~ipVi~~---  109 (219)
T 2ij9_A           58 SETFCDYIGIAATRLNAMLLISAIPSA-A-------------KK-----VPVD----FMEAEELSK--LYRVVVMGG---  109 (219)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHCTTB-C-------------SS-----CCSS----HHHHHHHHT--TCSEEEECC---
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHh-c-------------CC-----CcCC----HHHHHHHHH--CCCEEEEeC---
Confidence            455667777888888888888766543 1             10     0133    367888887  899999998   


Q ss_pred             cCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhh-cC-----Ccch
Q 023778          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-GA-----NVLH  185 (277)
Q Consensus       112 ~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~-g~-----~v~~  185 (277)
                          |..    .|++|++|+.+|.+|+|++++|||||||||++||+++|++++|++++++|+.+++.. |.     .+++
T Consensus       110 ----g~~----~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~~~~~~g~~~g~~~~~~  181 (219)
T 2ij9_A          110 ----TFP----GHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVID  181 (219)
T ss_dssp             ----CSS----SSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEECHHHHHHHTCC-----CCCCCSC
T ss_pred             ----CCC----CCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCCCCCCCeEeeeeCHHHHHHHHhcCCCCCCCccchH
Confidence                222    246899999999999999999999999999999999999999999999999999654 43     7889


Q ss_pred             HHHHHHHHhCCCcEEEEeccCC---------CCCeeEEe
Q 023778          186 PRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC  215 (277)
Q Consensus       186 p~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~  215 (277)
                      +.|++.+.+.++|++|.|+ +|         +..||+|.
T Consensus       182 ~~a~~~~~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i~  219 (219)
T 2ij9_A          182 LLAAKIIERSKIKTYVILG-TPENIMKAVKGEAVGTVIA  219 (219)
T ss_dssp             HHHHHHHHHHTCCEEEEEC-CHHHHHHHHTTCCCSEEEC
T ss_pred             HHHHHHHHHCCCeEEEEEC-CHhHHHHHHcCCCCCeEeC
Confidence            9999999999999999997 54         45789873

>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}

Probab=99.86  E-value=4.3e-21  Score=174.90  Aligned_cols=161  Identities=15%  Similarity=0.175  Sum_probs=130.2

Q ss_pred             hhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCC------CCC----cCCCchHHHHHHHHHhhcCCCceEEecCcc
Q 023778           41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTS------SNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (277)
Q Consensus        41 s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~------~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i  110 (277)
                      +.|+.  ...++..|.+.|++++.+++.+..++....      ++.    ..++    .+.++++++  .+.|||++|+ 
T Consensus       113 ~~G~~--n~~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~v~----~~~i~~lL~--~g~IpVi~~v-  183 (298)
T 2rd5_A          113 LVGKV--NKNLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVD----PSVLRPLVD--YGYIPVIASV-  183 (298)
T ss_dssp             HHHTH--HHHHHHHHHHTTSCEEEEETTGGGCEEEEECTTHHHHBSEEEEEEEC----GGGHHHHHH--TTCEEEEESE-
T ss_pred             HhchH--HHHHHHHHHhCCCCccccChHHCCEEEEEeCCccccCCcceEEEEEC----HHHHHHHHh--CCCEEEEcCe-
Confidence            35776  457899999999999999887543332211      221    1123    367888888  8999999997 


Q ss_pred             ccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc--CCcchHH-
Q 023778          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR-  187 (277)
Q Consensus       111 ~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p~-  187 (277)
                      +.++.|+..++   ++|++|+.+|.+|+|++++|||||||||++||+  | +++|++++++|+.+++..|  .++|.|+ 
T Consensus       184 ~~~~~G~~~~i---~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~~dp~--~-a~~i~~is~~e~~~~~~~g~~~gGM~~Kl  257 (298)
T 2rd5_A          184 AADDSGQAYNI---NADTVAGELAAALGAEKLILLTDVAGILENKED--P-SSLIKEIDIKGVKKMIEDGKVAGGMIPKV  257 (298)
T ss_dssp             EECTTSCEEEE---CHHHHHHHHHHHHTCSEEEEEESSSSEESSSSC--T-TSEECEEEHHHHHHHHHTTSSCTTHHHHH
T ss_pred             eECCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEeCCcCeecCCCC--C-CCCcccCCHHHHHHHHHCCCCCCchHHHH
Confidence            88888988877   489999999999999999999999999999998  4 8999999999999998754  4679985 


Q ss_pred             -HHHHHHhCCCc-EEEEeccCCC----------CCeeEEeC
Q 023778          188 -TIIPVMRYDIP-IVIRNIFNLS----------VPGIMICR  216 (277)
Q Consensus       188 -a~~~a~~~~i~-v~I~n~~~~~----------~~GT~I~~  216 (277)
                       ++..+.++|+| ++|.|+..|+          ..||+|.+
T Consensus       258 ~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i~~  298 (298)
T 2rd5_A          258 KCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG  298 (298)
T ss_dssp             HHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEEEEC
T ss_pred             HHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCceEEeC
Confidence             78888999998 9999987653          46898864

>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*

Probab=99.86  E-value=3e-21  Score=172.35  Aligned_cols=155  Identities=15%  Similarity=0.100  Sum_probs=123.2

Q ss_pred             cHHHHHHHHHHHHHHCCCCeEEEccccceeecCC-------CCCCc-CCCchHHHHHHHHHhhcCCCceEEecCccccCC
Q 023778           43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT-------SSNQV-DPDFSESEKRLEKWFSQSPSNTIIATGFIASTP  114 (277)
Q Consensus        43 Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~-------~~g~~-~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~  114 (277)
                      ++.+++.++ +.|+++|+++..+++.+..+++..       ..|.. .++.    +.++++++  .+.|||++|+ +.+.
T Consensus        81 ~~~~n~~l~-~~l~~~G~~a~~l~~~~~~~~~~~~~~~d~~~~g~~~~~~~----~~i~~ll~--~g~ipVi~~~-g~~~  152 (258)
T 1gs5_A           81 AGTANKTLL-AWAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSP----KLINSLLE--NGYLPVVSSI-GVTD  152 (258)
T ss_dssp             HTHHHHHHH-HHHHHTTCCEEEECTTGGGCEEEEECCGGGBSBEEEEECCC----HHHHHHHH--TTCEEEECSE-EECT
T ss_pred             hccchHHHH-HHHHHCCCCeEEEeecCCCEEEEEEcCCCCCCcCceeEECH----HHHHHHHH--CCCEEEEeCC-cCCC
Confidence            445666666 467999999999999886444431       11221 2443    67888898  8999999998 8888


Q ss_pred             CCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcC-----CcchHHHH
Q 023778          115 DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGA-----NVLHPRTI  189 (277)
Q Consensus       115 ~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~-----~v~~p~a~  189 (277)
                      .|+++++   ++|++|+.+|.+|+|+ +++||||||||++|      +++|++++++|+.+++..|.     +..++.|+
T Consensus       153 ~g~~~~~---~~D~~Aa~lA~~l~Ad-li~ltdV~Gv~~~d------~~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~a~  222 (258)
T 1gs5_A          153 EGQLMNV---NADQAATALAATLGAD-LILLSDVSGILDGK------GQRIAEMTAAKAEQLIEQGIITDGMIVKVNAAL  222 (258)
T ss_dssp             TSCEEEC---CHHHHHHHHHHHHTCE-EEEEESSSSCBCTT------SCBCCEECHHHHHHHHHTTCSCTHHHHHHHHHH
T ss_pred             CCcEEEe---cHHHHHHHHHHHhCCc-EEEEeCCCceECCC------CCCCcccCHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence            9998887   4999999999999999 99999999999975      57999999999999976542     44455688


Q ss_pred             HHHHhCCCcEEEEeccCC---------CCCeeEEe
Q 023778          190 IPVMRYDIPIVIRNIFNL---------SVPGIMIC  215 (277)
Q Consensus       190 ~~a~~~~i~v~I~n~~~~---------~~~GT~I~  215 (277)
                      +++.+.++|++|.|+++|         +..||+|.
T Consensus       223 ~~~~~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i~  257 (258)
T 1gs5_A          223 DAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL  257 (258)
T ss_dssp             HHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred             HHHHhCCCEEEEecCCCchHHHHHhcCCCCcEEEe
Confidence            888888999999998765         35789884

>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*

Probab=99.85  E-value=7.8e-21  Score=175.00  Aligned_cols=170  Identities=15%  Similarity=0.161  Sum_probs=132.9

Q ss_pred             hHHHHH--hhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCC-----CCCCc----CCCchHHHHHHHHHhhcCCCc
Q 023778           34 SFTDFV--VGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT-----SSNQV----DPDFSESEKRLEKWFSQSPSN  102 (277)
Q Consensus        34 ~~~~~v--~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~-----~~g~~----~~~~~~~~~~i~~~l~~~~~~  102 (277)
                      ...+.+  ++.|+.  ...++..|.+.|++++.+++.+..++...     .++..    .++    .+.++++++  .|.
T Consensus       117 ~~l~~~~~~~~G~i--n~~l~~~L~~~g~~a~gl~~~~a~~l~a~~~~~~d~g~~g~v~~v~----~~~i~~lL~--~g~  188 (321)
T 2v5h_A          117 DTMEVVEMVLVGRV--NKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVN----SEVIEPLLE--RGY  188 (321)
T ss_dssp             HHHHHHHHHHHHTH--HHHHHHHHHHHTCCEEEECTTGGGSEEEEECSSCSSBSBEEEEEEC----GGGTHHHHH--TTC
T ss_pred             HHHHHHHHHHhChH--HHHHHHHHHhCCCCeeeeChhhccEEEeecCCCccccccceeEEec----HHHHHHHHH--CCC
Confidence            444443  346776  45789999999999999987754222211     23321    123    367888888  899


Q ss_pred             eEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc--
Q 023778          103 TIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--  180 (277)
Q Consensus       103 VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g--  180 (277)
                      |||+++ ++.++.|+..++   ++|++|+.+|.+|+|++++|+|||||||++||+   ++++|++++++|+.+++..|  
T Consensus       189 IpVi~~-v~~~~~G~~~~i---~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dp~---~a~~i~~is~~e~~~l~~~g~~  261 (321)
T 2v5h_A          189 IPVISS-VAADENGQSFNI---NADTVAGEIAAALNAEKLILLTDTRGILEDPKR---PESLIPRLNIPQSRELIAQGIV  261 (321)
T ss_dssp             EEEEES-EEECTTSCEEEC---CHHHHHHHHHHHTTCSEEEEEESSSSCBSSTTC---TTCBCCEEEHHHHHHHHHTTSS
T ss_pred             eEEEeC-ceECCCCCEEEe---CHHHHHHHHHHHcCCCEEEEeeCCCceEcCCCC---CCeeeeEEcHHHHHHHHhCCCC
Confidence            999996 488888876544   589999999999999999999999999999998   58999999999999998754  


Q ss_pred             CCcchH--HHHHHHHhCCCc-EEEEeccCC----------CCCeeEEeCCC
Q 023778          181 ANVLHP--RTIIPVMRYDIP-IVIRNIFNL----------SVPGIMICRPP  218 (277)
Q Consensus       181 ~~v~~p--~a~~~a~~~~i~-v~I~n~~~~----------~~~GT~I~~~~  218 (277)
                      .++|+|  +++..|.++|+| ++|.|+..|          +..||+|.+..
T Consensus       262 ~gGM~~Kl~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~~~  312 (321)
T 2v5h_A          262 GGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGSG  312 (321)
T ss_dssp             CTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEEEECC-
T ss_pred             cCcHHHHHHHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCceEEECCc
Confidence            578998  588999999999 999997654          35799998753

>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}

Probab=99.85  E-value=1.6e-20  Score=169.01  Aligned_cols=146  Identities=17%  Similarity=0.218  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceecc---C
Q 023778           47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLK---R  123 (277)
Q Consensus        47 s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lg---r  123 (277)
                      +..++...|.++|++.          ++.       .|+    +.++++++  .+.|||++|+.+.+.....++.|   +
T Consensus       110 ~~l~~~~~l~~~G~~~----------vt~-------~d~----~~i~~lL~--~g~ipVi~g~~g~~~~~~~~~~g~~~~  166 (270)
T 2ogx_B          110 NAAMLGQLLAKHGIPV----------VGG-------AGL----SAVPLSLA--EVNAVVFSGMPPYKLWMRPAAEGVIPP  166 (270)
T ss_dssp             HHHHHHHHHGGGTCCB----------CCS-------STT----CHHHHHCT--TCCEEEEECSCTTGGGCCCCSSSSSCS
T ss_pred             HHHHHHHHHHhcCCce----------ecH-------hhH----HHHHHHHh--CCCEEEEeCCccccccccccccccCCC
Confidence            3555666666777761          121       233    35788887  88999999987655321111222   3


Q ss_pred             CCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHh--CCCcEEE
Q 023778          124 DGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMR--YDIPIVI  201 (277)
Q Consensus       124 ggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~--~~i~v~I  201 (277)
                      +++|++|+.+|.+++|+++++||||||||++||+++|++++|++++++|+.+++..| .++++.+...+..  .++|++|
T Consensus       167 ~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~g-~~~~ggm~~kl~aa~~~~~v~I  245 (270)
T 2ogx_B          167 YRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKGLHD-SILEFPVLDLLQSAQHVREVQV  245 (270)
T ss_dssp             SCHHHHHHHHHHHHTCSEEEEEESSSSEESSCSSSCTTCCEESEEEHHHHHHTTCCC-TTSCHHHHHHHHHCSSCCEEEE
T ss_pred             CCcHHHHHHHHHhcCCCEEEEEeCCCcccCCCCCCCCCCeEcceeCHHHHHHHhcCC-CcccHHHHHHHHHhhcCCcEEE
Confidence            789999999999999999999999999999999999999999999999999987544 5677766655554  5779999


Q ss_pred             EeccCCC---------CCeeEEeC
Q 023778          202 RNIFNLS---------VPGIMICR  216 (277)
Q Consensus       202 ~n~~~~~---------~~GT~I~~  216 (277)
                      .|+++|+         ..||+|.+
T Consensus       246 ~~g~~~~~l~~~l~g~~~GT~i~~  269 (270)
T 2ogx_B          246 VNGLVPGNLTRALAGEHVGTIITA  269 (270)
T ss_dssp             EETTSTTHHHHHHTTCCCSEEEEC
T ss_pred             EeCCCchHHHHHHcCCCCCeEecC
Confidence            9998764         67999975

>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2

Probab=99.84  E-value=3.3e-20  Score=167.68  Aligned_cols=158  Identities=18%  Similarity=0.145  Sum_probs=127.2

Q ss_pred             hhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCC------CCCC-c---CCCchHHHHHHHHHhhcCCCceEEecCcc
Q 023778           41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT------SSNQ-V---DPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (277)
Q Consensus        41 s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~------~~g~-~---~~~~~~~~~~i~~~l~~~~~~VpVv~G~i  110 (277)
                      +.|+.  ...++..|.+.|++++.+++.+..++...      .++. .   .++    .+.++++++  .+.|||++|+ 
T Consensus        98 ~~G~~--~~~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~~~----~~~i~~ll~--~g~IpVi~~v-  168 (282)
T 2bty_A           98 LVGKI--NKEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVN----PEILHALIE--NDYIPVIAPV-  168 (282)
T ss_dssp             HHHTH--HHHHHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEEC----THHHHHHHH--TTCEEEEESE-
T ss_pred             HhhHH--HHHHHHHHHhCCCCceecChhhCCEEEEecCCcccCCCcceEEEEec----HHHHHHHHH--CCCEEEECCC-
Confidence            36776  56689999999999999987754322211      2332 1   233    378889998  8999999997 


Q ss_pred             ccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc--CCcchH--
Q 023778          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHP--  186 (277)
Q Consensus       111 ~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p--  186 (277)
                      +.++.|+..++   ++|++|+.+|.+|+|++++|||||||||++     |  ++|++++++|+.+++..|  .++|.|  
T Consensus       169 ~~~~~G~~~~~---~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~-----~--~~i~~i~~~e~~~~~~~g~~~gGM~~K~  238 (282)
T 2bty_A          169 GIGEDGHSYNI---NADTAAAEIAKSLMAEKLILLTDVDGVLKD-----G--KLISTLTPDEAEELIRDGTVTGGMIPKV  238 (282)
T ss_dssp             EECSSSCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSSCEET-----T--EECCEECHHHHHHHHTTTCSCTTHHHHH
T ss_pred             ccCCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEeCCCCeecC-----c--hhhhhCCHHHHHHHHHcCCCCCcHHHHH
Confidence            88888988877   589999999999999999999999999997     2  899999999999998755  366877  


Q ss_pred             HHHHHHHhCCCc-EEEEeccCCC----------CCeeEEeCC
Q 023778          187 RTIIPVMRYDIP-IVIRNIFNLS----------VPGIMICRP  217 (277)
Q Consensus       187 ~a~~~a~~~~i~-v~I~n~~~~~----------~~GT~I~~~  217 (277)
                      +++..+.++|+| ++|.|+..|+          ..||+|.+.
T Consensus       239 ~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~  280 (282)
T 2bty_A          239 ECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKEL  280 (282)
T ss_dssp             HHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCC
T ss_pred             HHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCceEEEeC
Confidence            588999999998 9999987653          579999753

>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*

Probab=99.82  E-value=5.6e-20  Score=163.59  Aligned_cols=152  Identities=16%  Similarity=0.186  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCC
Q 023778           45 LWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRD  124 (277)
Q Consensus        45 ~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrg  124 (277)
                      .++..++ ++|.++|+++..+++.++.. .    ++  ++.    +.++++++  .+.|||++|+++.+.+|++.++   
T Consensus        83 ~ln~~~v-~~l~~~G~~a~~l~~~~~~~-~----g~--v~~----~~i~~ll~--~g~ipVi~~~~~~~~~~~~~~~---  145 (249)
T 3ll5_A           83 NLDLMVI-DAMIEMGMRPISVPISALRY-D----GR--FDY----TPLIRYID--AGFVPVSYGDVYIKDEHSYGIY---  145 (249)
T ss_dssp             HHHHHHH-HHHHHTTCCEEECCGGGSCB-S----SS--BCC----HHHHHHHH--TTCEEEEECEEEEEETTEEEEE---
T ss_pred             HHHHHHH-HHHHHCCCcEEEEcHHHccc-c----cE--EcH----HHHHHHHH--CCCEEEECCCEEEcCCCceeee---
Confidence            3444444 89999999999999988753 1    22  233    78899998  8999999998887766765543   


Q ss_pred             CchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHH--hhcCCcchHH--HHHHH-HhCCCcE
Q 023778          125 GSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS--YFGANVLHPR--TIIPV-MRYDIPI  199 (277)
Q Consensus       125 gsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~--~~g~~v~~p~--a~~~a-~~~~i~v  199 (277)
                      ++|++|+.+|.+|+|++++|||||||||++||+.+|+++++++++ +++....  ..+..+|.|+  ++..+ .++|+++
T Consensus       146 ~~D~~Aa~lA~~l~Ad~li~ltdvdGv~~~dp~~~~~a~~i~~i~-~~~~~~~~~~~~tGgM~~Kl~aA~~a~~~~Gv~v  224 (249)
T 3ll5_A          146 SGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDID-TNITFDRVQNDVTGGIGKKFESMVKMKSSVKNGV  224 (249)
T ss_dssp             CHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCCEEC-CCC-------------HHHHHHHHHHHTTCTTCE
T ss_pred             cHHHHHHHHHHhcCCCEEEEEeCCCccCCCCCCCCCCcEEHHHHH-HHHhcccCCCeeECCHHHHHHHHHHHHHhcCCEE
Confidence            589999999999999999999999999999999999999999995 2222221  1345788885  45555 8999999


Q ss_pred             EEEeccCC--------CCC-eeEE
Q 023778          200 VIRNIFNL--------SVP-GIMI  214 (277)
Q Consensus       200 ~I~n~~~~--------~~~-GT~I  214 (277)
                      +|.|++.|        +.. ||+|
T Consensus       225 ~I~~g~~~~~l~~l~g~~~~GT~i  248 (249)
T 3ll5_A          225 YLINGNHPERIGDIGKESFIGTVI  248 (249)
T ss_dssp             EEEETTSGGGGGGTTSTTCCSEEE
T ss_pred             EEEeCCChhHHHHhCCCCCCCEEe
Confidence            99998654        345 8877

>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2

Probab=99.82  E-value=3.5e-19  Score=162.47  Aligned_cols=169  Identities=14%  Similarity=0.178  Sum_probs=131.7

Q ss_pred             hHHHHH--hhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCC-----------------CCCCc-CCCchHHHHHHH
Q 023778           34 SFTDFV--VGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT-----------------SSNQV-DPDFSESEKRLE   93 (277)
Q Consensus        34 ~~~~~v--~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~-----------------~~g~~-~~~~~~~~~~i~   93 (277)
                      ...+.+  ++.|+.  ...+++.|.+.|++++.+++.+-.+++..                 .++.. .+.+ ...+.++
T Consensus        94 ~~l~~~~~~~~G~~--~~~l~~~l~~~g~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~~g~v~~-v~~~~i~  170 (300)
T 2buf_A           94 ATMDVVEMVLGGQV--NKDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTG-VNVGLLN  170 (300)
T ss_dssp             HHHHHHHHHHHHTH--HHHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEE-ECHHHHH
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHhCCCCEEEecCCCCCeeeeeeccccccchhhcccccccCCcceeEEE-ECHHHHH
Confidence            344444  446887  88999999999999999987644322211                 12211 1111 1147788


Q ss_pred             HHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHH
Q 023778           94 KWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEA  173 (277)
Q Consensus        94 ~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~  173 (277)
                      ++++  .+.|||+++ ++.++.|+..++   ++|++|+.+|.+|+|++++|||||||||++      ++++|++++++|+
T Consensus       171 ~lL~--~g~IpVi~~-v~~~~~G~~~~i---~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~------~a~~i~~i~~~e~  238 (300)
T 2buf_A          171 MLVK--GDFIPVIAP-IGVGSNGESYNI---NADLVAGKVAEALKAEKLMLLTNIAGLMDK------QGQVLTGLSTEQV  238 (300)
T ss_dssp             HHHH--TTCEEEEEE-EEECTTSCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSCCBCT------TSCBCCEECHHHH
T ss_pred             HHHH--CCCEEEEcC-ceeCCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEeCCCCeECC------CCcChhhCCHHHH
Confidence            8998  899999996 488888888766   489999999999999999999999999986      4889999999999


Q ss_pred             HHHHhhc--CCcchH--HHHHHHHhCCCc-EEEEeccCCC----------CCeeEEeCC
Q 023778          174 WEMSYFG--ANVLHP--RTIIPVMRYDIP-IVIRNIFNLS----------VPGIMICRP  217 (277)
Q Consensus       174 ~~l~~~g--~~v~~p--~a~~~a~~~~i~-v~I~n~~~~~----------~~GT~I~~~  217 (277)
                      .+++..|  .++|+|  +++..+.++|+| ++|.|+..|+          ..||+|.+.
T Consensus       239 ~~~~~~~~~~ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~  297 (300)
T 2buf_A          239 NELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR  297 (300)
T ss_dssp             HHHHHTTCSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECC
T ss_pred             HHHHHcCCCCCccHHHHHHHHHHHHhCCCEEEEeeCCCCchHHHHHhcCCCCceEEEeC
Confidence            9998754  578999  578889999999 9999986553          579999764

>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}

Probab=99.80  E-value=2.2e-19  Score=162.14  Aligned_cols=148  Identities=14%  Similarity=0.266  Sum_probs=124.7

Q ss_pred             HHHHHHHHHCCCCeEEEccccceeecCCCC-----CC----cCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCce
Q 023778           49 QMLAAVVRKNGIDCKWMDTREVLIVNPTSS-----NQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPT  119 (277)
Q Consensus        49 ~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~-----g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~  119 (277)
                      ..+++.|.+.|+++..+++.+..+++...+     +.    .+++    .+.++++++  .+.|||++| ++.+++|+..
T Consensus       117 ~~i~~~L~~~G~~a~~l~g~dg~llta~~~~~~d~g~vG~i~~v~----~~~i~~lL~--~g~IPVi~~-v~~~~~G~~~  189 (279)
T 3l86_A          117 KNLQEKLRQAGVSCQQLKSDIKHVVAADYLDKDTYGYVGDVTHIN----KRVIEEFLE--NRQIPILAS-LGYSKEGDML  189 (279)
T ss_dssp             HHHHHHHHHTTCCEEECSGGGGGTEEEEESCHHHHBSBEEEEEEC----HHHHHHHHH--TTCEEEEES-EEECTTSCEE
T ss_pred             HHHHHHHHhCCCCEEEEecCcCCEEEeeccCccccCcccccchhh----HHHHHHHHh--CCcEEEECC-cEECCCCCEe
Confidence            789999999999999999988655554322     11    1233    488999998  899999999 7888889888


Q ss_pred             eccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc--CCcchH--HHHHHHHhC
Q 023778          120 TLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHP--RTIIPVMRY  195 (277)
Q Consensus       120 ~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p--~a~~~a~~~  195 (277)
                      ++   ++|++|+.+|.+|+|++++|+|||||||+       ++++|++++++|+.+++..+  ..+|.|  +++..|.++
T Consensus       190 ~i---~~D~~Aa~lA~~L~Ad~LiilTDVdGV~~-------d~~~I~~i~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~~  259 (279)
T 3l86_A          190 NI---NADYLATAVAVALAADKLILMTNVKGVLE-------NGAVLEKITSHQVQEKIDTAVITAGMIPKIESAAKTVAA  259 (279)
T ss_dssp             EC---CHHHHHHHHHHHTTCSEEEEECSSSSCEE-------TTEECCEEEGGGSHHHHHTTSSCTTHHHHHHHHHHHHHT
T ss_pred             ec---CHHHHHHHHHHHcCCCEEEEEeCCCcccc-------CCEehhhccHHHHHHHHhCCCCcCcHHHHHHHHHHHHHc
Confidence            77   58999999999999999999999999994       47899999999999997644  578888  588999999


Q ss_pred             CCc-EEEEeccCCCCCeeEEeC
Q 023778          196 DIP-IVIRNIFNLSVPGIMICR  216 (277)
Q Consensus       196 ~i~-v~I~n~~~~~~~GT~I~~  216 (277)
                      |++ ++|.|++..   ||+|..
T Consensus       260 Gv~~v~I~~~~~~---GT~i~~  278 (279)
T 3l86_A          260 GVGQVLIGDNLLT---GTLITA  278 (279)
T ss_dssp             TCSEEEEESSSSC---SEEEEC
T ss_pred             CCCEEEEeccCCC---CeEEec
Confidence            998 999999974   999965

>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1

Probab=99.80  E-value=1e-18  Score=160.31  Aligned_cols=120  Identities=17%  Similarity=0.153  Sum_probs=98.9

Q ss_pred             HHHHHHHhhcCCCceEEecCc----cccCCCCCceecc---CCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCC
Q 023778           89 EKRLEKWFSQSPSNTIIATGF----IASTPDNIPTTLK---RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSE  161 (277)
Q Consensus        89 ~~~i~~~l~~~~~~VpVv~G~----i~~~~~G~~~~lg---rggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~  161 (277)
                      .+.++++++  .+.|||++|+    ++.+.++   ++|   ++++|++|+.+|.+|+|++++|+|||||||++||  +|+
T Consensus       176 ~~~i~~lL~--~g~IpV~~Gg~giPi~~~~d~---~~g~~~~~d~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~~p--~~~  248 (314)
T 1e19_A          176 AETIKKLVE--RGVIVIASGGGGVPVILEDGE---IKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYG--TEK  248 (314)
T ss_dssp             HHHHHHHHH--TTCEEECSGGGCEEEEEETTE---EEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEETTT--STT
T ss_pred             HHHHHHHHH--CCCEEEEeCCCccCeEECCCC---cceeEEeccHHHHHHHHHHHcCCCEEEEeccCCEEECCCC--CCC
Confidence            478899998  8999999985    3333333   344   4889999999999999999999999999999999  489


Q ss_pred             CeEEeeeCHHHHHHHHhhc---CCcchHH---HHHHHHhCCCcEEEEec------cCCCCCeeEEeC
Q 023778          162 AVILRTLSYQEAWEMSYFG---ANVLHPR---TIIPVMRYDIPIVIRNI------FNLSVPGIMICR  216 (277)
Q Consensus       162 a~~i~~is~~e~~~l~~~g---~~v~~p~---a~~~a~~~~i~v~I~n~------~~~~~~GT~I~~  216 (277)
                      +++|++++++|+.+++..|   .++|.|+   |++.+.+.+++++|.|.      +.. ..||+|.+
T Consensus       249 a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~~~l~~~~~g-~~GT~i~~  314 (314)
T 1e19_A          249 EQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEG-KTGTQVLP  314 (314)
T ss_dssp             CEECCEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEGGGHHHHHTT-SSSEEEEC
T ss_pred             CeECCEECHHHHHHHHhCCCcCCCChHHHHHHHHHHHHhCCCeEEEecHHHHHHHHcC-CCCeEEcC
Confidence            9999999999999997754   3789997   66778888999999983      343 47999964

>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*

Probab=99.76  E-value=1.6e-17  Score=149.16  Aligned_cols=153  Identities=13%  Similarity=0.082  Sum_probs=114.7

Q ss_pred             hhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCce
Q 023778           40 VGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPT  119 (277)
Q Consensus        40 ~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~  119 (277)
                      -+.++ ++. .++++|.++|+++..+++.++...+.+    ..++.    +.++++++  .+.|||++||++.+.+|++.
T Consensus        94 ~a~~~-ln~-~l~~~l~~~G~~a~~l~~~d~~~~~~g----~~v~~----~~i~~lL~--~g~ipVi~~~~~~~~~g~~~  161 (266)
T 3k4o_A           94 RAMRR-FNN-IIIDTLQSYDIPAVSIQPSSFVVFGDK----LIFDT----SAIKEMLK--RNLVPVIHGDIVIDDKNGYR  161 (266)
T ss_dssp             HHHHH-HHH-HHHHHHHTTTCCEEEECGGGTCEESSS----CBCCC----HHHHHHHH--TTCEEEEECEEEEESSSCEE
T ss_pred             HHHHH-HHH-HHHHHHHHCCCcEEEeeHHHcCcccCc----eEecH----HHHHHHHH--CCCEEEEeCCEEEcCCCCee
Confidence            34444 344 478999999999999999988665532    23444    78899998  89999999988888877764


Q ss_pred             eccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHh--------hcCCcchHHH--H
Q 023778          120 TLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY--------FGANVLHPRT--I  189 (277)
Q Consensus       120 ~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~--------~g~~v~~p~a--~  189 (277)
                      +   +++|++|+.+|.+|+|+++++|||||||| +||+      ++++++..|+.++..        .+..+|.|+.  +
T Consensus       162 ~---~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~~------~i~~~~~~e~~~l~~~~~~~~~~~~tGGM~~Kv~aa  231 (266)
T 3k4o_A          162 I---ISGDDIVPYLANELKADLILYATDVDGVL-IDNK------PIKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMI  231 (266)
T ss_dssp             E---ECHHHHHHHHHHHHTCSEEEEEESSSSSB-SSSS------BCSEECTTTHHHHHHHHHSTTCSCCSSHHHHHHHHH
T ss_pred             e---eCHHHHHHHHHHHcCCCEEEEEecCCeEE-eCCe------ecCcCCHHHHHHHHHHhccccCCcccCCHHHHHHHH
Confidence            3   46899999999999999999999999999 8876      455555544444432        2345788863  3


Q ss_pred             HHHHhCCCcEEEEeccCC---------CCCeeEEeCC
Q 023778          190 IPVMRYDIPIVIRNIFNL---------SVPGIMICRP  217 (277)
Q Consensus       190 ~~a~~~~i~v~I~n~~~~---------~~~GT~I~~~  217 (277)
                      ..+.+   +++|.|++.|         +..||+|.+.
T Consensus       232 ~~a~~---~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  265 (266)
T 3k4o_A          232 RKNKC---RGFVFNGNKANNIYKALLGEVEGTEIDFS  265 (266)
T ss_dssp             HHTTC---EEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred             HHHhc---CEEEEeCCCccHHHHHhCCCCCceEEEeC
Confidence            33333   9999998765         3579999874

>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}

Probab=99.72  E-value=8.4e-17  Score=147.72  Aligned_cols=120  Identities=19%  Similarity=0.228  Sum_probs=95.3

Q ss_pred             HHHHHHHhhcCCCceEEecCcc----ccCCCCCc----eeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCC
Q 023778           89 EKRLEKWFSQSPSNTIIATGFI----ASTPDNIP----TTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVS  160 (277)
Q Consensus        89 ~~~i~~~l~~~~~~VpVv~G~i----~~~~~G~~----~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~  160 (277)
                      .+.++++++  .+.|||++|+-    +.+++|..    .++   ++|++|+.+|.+|+|+.++|+|||||||+ ||+ +|
T Consensus       176 ~~~i~~lL~--~g~IpI~~g~~g~pv~~~~~g~~~g~~~~i---d~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp~-~p  248 (316)
T 2e9y_A          176 RDLIAEASA--ESPAVVALGGGGVPVVERPGGVLEPVEAVV---DKDLASSLLATQLNADLLVILTDVPGVAV-NYG-RE  248 (316)
T ss_dssp             HHHHHHHHH--HCSEEEECGGGCEEEEECTTSCEEECSCCC---CHHHHHHHHHHHTTCSEEEEEESSSSCEE-TTT-ST
T ss_pred             HHHHHHHHH--CCCEEEEECCCCCCeeECCCCCeecceeee---CHHHHHHHHHHHcCCCEEEEEeCchHhhC-CCC-CC
Confidence            478888998  78999998743    34566632    222   68999999999999999999999999999 885 78


Q ss_pred             CCeEEeeeCHHHHHHHHhh---cCCcchHH--HHHHHHhCCC-cEEEEecc------CCCCCeeEEeC
Q 023778          161 EAVILRTLSYQEAWEMSYF---GANVLHPR--TIIPVMRYDI-PIVIRNIF------NLSVPGIMICR  216 (277)
Q Consensus       161 ~a~~i~~is~~e~~~l~~~---g~~v~~p~--a~~~a~~~~i-~v~I~n~~------~~~~~GT~I~~  216 (277)
                      ++++|++++++|+.+++..   +..+|.|+  ++..+.++|+ +++|.|..      .. ..||+|.+
T Consensus       249 ~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~~~~l~~~l~g-~~GT~i~~  315 (316)
T 2e9y_A          249 GERWLRRAAASELKKYLREGHFPPGSMGPKVEAAISFVERTGKPAVIGSLEEARQVLSL-QAGTVVML  315 (316)
T ss_dssp             TCEECSEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHHCSCEEEEESTTHHHHHTT-SSSEEEEC
T ss_pred             CCcCCcEEcHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEECcHHHHHHHHcC-CCCeEEec
Confidence            9999999999999999763   34678885  5666778899 79997631      22 57999864

>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*

Probab=99.70  E-value=1.3e-16  Score=152.80  Aligned_cols=161  Identities=14%  Similarity=0.090  Sum_probs=120.7

Q ss_pred             hcHHHHHHHHHHHHHHCCCCe----EEEccccceeecCCC--------CCC-cCCCchHHHHHHHHHhhcCCCceEEecC
Q 023778           42 HGELWSAQMLAAVVRKNGIDC----KWMDTREVLIVNPTS--------SNQ-VDPDFSESEKRLEKWFSQSPSNTIIATG  108 (277)
Q Consensus        42 ~Ge~~s~~ll~~~L~~~Gi~a----~~l~~~~~~~~~~~~--------~g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G  108 (277)
                      .|+.  ...+.+.|. .|+++    +.+++.+..+++...        ++. ..+..-. .+.++++++  .|.|||+++
T Consensus       119 ~G~~--~~~l~~~l~-~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~-~~~i~~lL~--~g~ipIi~~  192 (456)
T 3d2m_A          119 AGTV--RSRFEAALC-GSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTD-TAALRFQLD--AGNIVWMPP  192 (456)
T ss_dssp             HHHH--HHHHHHHHH-TC--------CCCEECCSCEEEEECCEETTEECBTBEEEEEEC-HHHHHHHHH--TTCEEEECS
T ss_pred             HhHH--HHHHHHHHh-cccccCCCccceeeccCcEEEEEEcccccCcccCceeeEEEEC-HHHHHHHHH--CCCeEEECC
Confidence            4654  346677888 99998    667666533333211        121 0111111 378999998  899999999


Q ss_pred             ccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchH--
Q 023778          109 FIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP--  186 (277)
Q Consensus       109 ~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p--  186 (277)
                      + +.+..|++.++   ++|++|+.+|.+|+|+.++|+|||||||++      ++++|++++++|+.+++..|.++|.|  
T Consensus       193 ~-~~~~~g~~~~~---~~D~~Aa~lA~~l~Ad~li~lTdvdGv~~~------~~~~i~~i~~~e~~~~~~~g~ggm~~Kl  262 (456)
T 3d2m_A          193 L-GHSYGGKTFNL---DMVQAAASVAVSLQAEKLVYLTLSDGISRP------DGTLAETLSAQEAQSLAEHAASETRRLI  262 (456)
T ss_dssp             E-EECTTSCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSSCBCT------TSCBCSEEEHHHHHHHHTTCCHHHHHHH
T ss_pred             c-ccCCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEECCccccCC------CCCccccCCHHHHHHHHhccCCChHHHH
Confidence            6 77888988876   589999999999999999999999999985      58899999999999998777789999  


Q ss_pred             HHHHHHHhCCCc-EEEEeccCC----------CCCeeEEeCCC
Q 023778          187 RTIIPVMRYDIP-IVIRNIFNL----------SVPGIMICRPP  218 (277)
Q Consensus       187 ~a~~~a~~~~i~-v~I~n~~~~----------~~~GT~I~~~~  218 (277)
                      +++..|.++|++ ++|.|+..|          +..||+|.+..
T Consensus       263 ~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~GT~i~~~~  305 (456)
T 3d2m_A          263 SSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKEA  305 (456)
T ss_dssp             HHHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCSSEEEECCC
T ss_pred             HHHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCCceeeeccc
Confidence            578888999996 999997544          45799998754

>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*

Probab=99.69  E-value=3.5e-16  Score=142.88  Aligned_cols=166  Identities=14%  Similarity=0.125  Sum_probs=122.5

Q ss_pred             hHHHHH-hhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecC---CCCC---C-cCCCchHHHHHHHHHhhcCCCceEE
Q 023778           34 SFTDFV-VGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNP---TSSN---Q-VDPDFSESEKRLEKWFSQSPSNTII  105 (277)
Q Consensus        34 ~~~~~v-~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~---~~~g---~-~~~~~~~~~~~i~~~l~~~~~~VpV  105 (277)
                      +..+.+ -.+|+ + ...+++.|.+.|++|+++++. ++....   ..+|   + .+++.    +.++++++  .|.|||
T Consensus       114 ~~l~vv~m~~~~-v-n~~lv~~L~~~G~~Av~l~gg-~~~a~~~~~~d~g~~G~i~~v~~----~~i~~lL~--~g~IpV  184 (307)
T 3zzh_A          114 HTMAVVRKCFLE-Q-NLKLVTALEQLGVRARPITSG-VFTADYLDKDKYKLVGNIKSVTK----EPIEASIK--AGALPI  184 (307)
T ss_dssp             HHHHHHHHHHHH-H-HHHHHHHHHHTTCCEEEECSS-SEEEEESCHHHHBSBEEEEEECC----HHHHHHHH--HTCEEE
T ss_pred             HHHHHHHHHHHH-H-HHHHHHHHHhCCCCeeEEcCC-cEEEEecCccccCccccccccCH----HHHHHHHH--CCCEEE
Confidence            344443 23565 4 466689999999999999873 322110   0122   1 23554    78899998  889999


Q ss_pred             ecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHH-HHHHHhhc--CC
Q 023778          106 ATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQE-AWEMSYFG--AN  182 (277)
Q Consensus       106 v~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e-~~~l~~~g--~~  182 (277)
                      ++|+ +.+.+|++.++   ++|++|+.+|.+|+|++++|+|||||||++     |++++|+++++.| +.++...+  ..
T Consensus       185 i~~~-g~~~~G~~~~i---~~D~~A~~lA~~L~Ad~Li~lTdV~GV~~~-----~~~~~i~~i~~~e~~~~l~~~~~~tG  255 (307)
T 3zzh_A          185 LTSL-AETASGQMLNV---NADVAAGELARVFEPLKIVYLNEKGGIING-----STGEKISMINLDEEYDDLMKQSWVKY  255 (307)
T ss_dssp             ECCC-EECTTCBEEBC---CHHHHHHHHHHHHCCSEEEEECSSCSCEET-----TTTEECCEEEHHHHHHHHHTSTTSCH
T ss_pred             EeCC-eECCCCcEEec---CHHHHHHHHHHhCCCCEEEEEeCCcceecC-----CCCcCCcccCHHHHHHHHHhCCCCCC
Confidence            9997 78888988876   589999999999999999999999999986     5789999999976 66776543  46


Q ss_pred             cchHH--HHHHHHh---CCCcEEEEecc-------CCCCCeeEEeCC
Q 023778          183 VLHPR--TIIPVMR---YDIPIVIRNIF-------NLSVPGIMICRP  217 (277)
Q Consensus       183 v~~p~--a~~~a~~---~~i~v~I~n~~-------~~~~~GT~I~~~  217 (277)
                      +|.|+  +++.|.+   .+.++.|.+..       ..+..||+|.+.
T Consensus       256 GM~~Kl~aa~~a~~~v~~g~~v~I~~~~~ll~elft~~g~GT~I~~~  302 (307)
T 3zzh_A          256 GTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRG  302 (307)
T ss_dssp             HHHHHHHHHHHHHHHSCTTCCEEEECGGGHHHHHHSCCCCSEEEECC
T ss_pred             cHHHHHHHHHHHHHHhccCeEEEEeCccHHHHHHhcCCCCcEEEecC
Confidence            88886  3333333   37889998742       346789999874

>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*

Probab=99.67  E-value=2.6e-16  Score=144.07  Aligned_cols=120  Identities=16%  Similarity=0.195  Sum_probs=95.5

Q ss_pred             HHHHHHHhhcCCCceEEecCcccc-----CCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCe
Q 023778           89 EKRLEKWFSQSPSNTIIATGFIAS-----TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAV  163 (277)
Q Consensus        89 ~~~i~~~l~~~~~~VpVv~G~i~~-----~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~  163 (277)
                      .+.++++++  .+.|||++|+.|.     +..|+..+   .++|++|+.+|.+|+|++++|+|||||||+ || .+|+++
T Consensus       172 ~~~i~~lL~--~g~IpIi~Gg~Gipv~~~~~~g~~~~---~~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp-~~~~a~  244 (310)
T 2we5_A          172 AETINTLIK--NDIITISCGGGGIPVVGQELKGVEAV---IDKDFASEKLAELVDADALVILTGVDYVCI-NY-GKPDEK  244 (310)
T ss_dssp             HHHHHHHHH--TTCEEECCGGGCEEEETTTTEECCCC---CCHHHHHHHHHHHTTCSEEEEECSCSSCEE-ST-TSTTCE
T ss_pred             HHHHHHHHH--CCCEEEEECCCCCCCcCCCCCCcEee---cCHHHHHHHHHHHcCCCEEEEEeCchHhhC-CC-CCCCCe
Confidence            488999998  8999999976431     12333333   358999999999999999999999999999 88 488999


Q ss_pred             EEeeeCHHHHHHHHhhc---CCcchHH--HHHHHHhCCC--cEEEEec------cCCCCCeeEEe
Q 023778          164 ILRTLSYQEAWEMSYFG---ANVLHPR--TIIPVMRYDI--PIVIRNI------FNLSVPGIMIC  215 (277)
Q Consensus       164 ~i~~is~~e~~~l~~~g---~~v~~p~--a~~~a~~~~i--~v~I~n~------~~~~~~GT~I~  215 (277)
                      +|++++++|+.+++..|   ..+|.|+  ++..+.++|+  +++|.|.      +..+..||+|.
T Consensus       245 ~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~~~~l~~~l~g~~~GT~i~  309 (310)
T 2we5_A          245 QLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITSLENLGSMSGDEIVGTVVT  309 (310)
T ss_dssp             ECCEEEHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHSTTCEEEEECSGGGGGCBTTBCCSEEEE
T ss_pred             ECCEEcHHHHHHHhhCCCCCCCChHHHHHHHHHHHHcCCCceEEECcHHHHHHHHcCCCCCeEEe
Confidence            99999999999997644   3678885  6677788888  8999752      23346789885

>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*

Probab=99.65  E-value=3.8e-15  Score=142.81  Aligned_cols=159  Identities=14%  Similarity=0.152  Sum_probs=121.5

Q ss_pred             hcHHHHHHHHHHHHHHCCCCeEEEccccceeec---CCCCCC----cCCCchHHHHHHHHHhhcCCCceEEecCccccCC
Q 023778           42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIVN---PTSSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTP  114 (277)
Q Consensus        42 ~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~---~~~~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~  114 (277)
                      .|+ + ...+++.|.++|++|+++++. ++...   ...+|.    .+++.    +.++.+++  .|.|||++|+ +.+.
T Consensus       123 ~~~-v-n~~lv~~L~~~G~~Avglsgg-~~~a~~~~~~d~g~vG~I~~v~~----~~I~~lL~--~G~IPVi~~~-g~~~  192 (464)
T 4ab7_A          123 FLE-Q-NLKLVTALEQLGVRARPITSG-VFTADYLDKDKYKLVGNIKSVTK----EPIEASIK--AGALPILTSL-AETA  192 (464)
T ss_dssp             HHH-H-HHHHHHHHHHTTCCEEEECSS-SEEEEESCTTTTBSBEEEEEECC----HHHHHHHH--TTCEEEEESE-EECT
T ss_pred             HHH-H-HHHHHHHHHhCCCCeEEECCC-cEEEEecCccccCCcCcccccCH----HHHHHHHH--CCcEEEEcCC-cCCC
Confidence            454 3 466889999999999999873 32221   112332    23554    88999998  8999999997 8888


Q ss_pred             CCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHH-HHHHHhhc--CCcchHH--HH
Q 023778          115 DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQE-AWEMSYFG--ANVLHPR--TI  189 (277)
Q Consensus       115 ~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e-~~~l~~~g--~~v~~p~--a~  189 (277)
                      +|++.++   ++|++|+.+|.+|+|++++++|||+|||++     |++++|+++++.| +.++...|  ..+|.|+  ++
T Consensus       193 ~G~~~ni---~~D~~Aa~lA~~L~Ad~Li~lTdV~GV~~~-----~~~~lI~~it~~e~~~~li~~~~~tgGM~pKl~aa  264 (464)
T 4ab7_A          193 SGQMLNV---NADVAAGELARVFEPLKIVYLNEKGGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREI  264 (464)
T ss_dssp             TCBEEEC---CHHHHHHHHHHHHCCSEEEEEESSCSEECT-----TTCCEECEEEHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred             CCCEEEe---cHHHHHHHHHHHcCCCEEEEEecccccccC-----CCCcCCcccCHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence            8998876   599999999999999999999999999986     4689999999976 56676543  4679986  45


Q ss_pred             HHHHhC---CCcEEEEecc-------CCCCCeeEEeCCC
Q 023778          190 IPVMRY---DIPIVIRNIF-------NLSVPGIMICRPP  218 (277)
Q Consensus       190 ~~a~~~---~i~v~I~n~~-------~~~~~GT~I~~~~  218 (277)
                      +.|.+.   +.++.|.+..       ..+..||+|.+..
T Consensus       265 ~aa~~~v~~g~~v~I~~~~~ll~eLft~~g~GT~I~~~~  303 (464)
T 4ab7_A          265 KELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRGY  303 (464)
T ss_dssp             HHHHTTSCTTCEEEEEESTTHHHHTTSSSTTSEEEECCC
T ss_pred             HHHHHhcccCcEEEEecChHHHHHHhcCCCCceEEecCc
Confidence            555543   7789998742       3456899998873

>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}

Probab=99.62  E-value=2.7e-15  Score=136.76  Aligned_cols=122  Identities=15%  Similarity=0.145  Sum_probs=94.5

Q ss_pred             HHHHHHhhcCCCceEEecCcccc---CCCCCce-eccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEE
Q 023778           90 KRLEKWFSQSPSNTIIATGFIAS---TPDNIPT-TLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (277)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~i~~---~~~G~~~-~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i  165 (277)
                      +.|+.+++  .+.|||++|+-|.   ++++..+ +...+++|++|+.+|.+|+|+.++|+|||||||+ ||+ .|++++|
T Consensus       179 ~~I~~LL~--~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIiLTDVdGVy~-dp~-~p~a~~I  254 (317)
T 3kzf_A          179 GVIKTLID--NNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI-NYK-KPDERKL  254 (317)
T ss_dssp             HHHHHHHH--TTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEECCSSSSCEE-SSS-CSSCEEC
T ss_pred             HHHHHHHH--CCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEEecCCCeeeC-CCC-CCCCeEC
Confidence            67888888  8999999876443   2333332 3346679999999999999999999999999999 999 5999999


Q ss_pred             eeeCHHHHHHHHhhc---CCcchHH--HHHH-HHhCCCcEEEEecc------CCCCCeeEEeC
Q 023778          166 RTLSYQEAWEMSYFG---ANVLHPR--TIIP-VMRYDIPIVIRNIF------NLSVPGIMICR  216 (277)
Q Consensus       166 ~~is~~e~~~l~~~g---~~v~~p~--a~~~-a~~~~i~v~I~n~~------~~~~~GT~I~~  216 (277)
                      ++++++|+.+++..|   ...|.|+  ++.. +.+.+.+++|.|..      +.+ .||+|.+
T Consensus       255 ~~it~~e~~~li~~g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~~~l~~~l~G~-~GT~I~~  316 (317)
T 3kzf_A          255 EEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGK-CGTRIIK  316 (317)
T ss_dssp             CEEEHHHHHHHHTTTSCC--CCHHHHHHHHHHHHHHCCCEEECCGGGHHHHHTTS-SSEEEEC
T ss_pred             cCcCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEEcchHHHHHHHCCC-CCeEEec
Confidence            999999999997543   4678885  4444 45556689999874      233 7999976

>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*

Probab=99.61  E-value=7.4e-15  Score=140.86  Aligned_cols=157  Identities=14%  Similarity=0.148  Sum_probs=119.5

Q ss_pred             hcHHHHHHHHHHHHHHCCCCeEEEccccce--eecCCCCCC----cCCCchHHHHHHHHHhhcCCCceEEecCccccCCC
Q 023778           42 HGELWSAQMLAAVVRKNGIDCKWMDTREVL--IVNPTSSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD  115 (277)
Q Consensus        42 ~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~--~~~~~~~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~  115 (277)
                      .| .++ ..++++|.+.|++|+++.+..+.  ..+...+|.    ..++.    +.++++++  .|.|||++++ +.+..
T Consensus       133 lg-~vn-~~lv~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~----~~i~~lL~--~g~IpVi~p~-g~~~~  203 (460)
T 3s6g_A          133 LT-QAN-LALVDAIRDAGGRAAAVPRGVFEADIVDADKLGRVGEPRHIHL----DLVGSAAR--AGQAAILACL-GETPD  203 (460)
T ss_dssp             HH-HHH-HHHHHHHHHTTCCEEEECSSSEEEEESCTTTTBSEEEEEEECC----HHHHHHHH--TTCEEEEECE-EECTT
T ss_pred             HH-HHH-HHHHHHHHhCCCCceEEecCeEEEEEecCcccCccCcceEEcH----HHHHHHHH--CCcEEEEECc-eECCC
Confidence            56 455 45556999999999999985441  112223432    23554    88999998  8999999986 77888


Q ss_pred             CCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHH-HHHHHHhhc--CCcchHH--HHH
Q 023778          116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ-EAWEMSYFG--ANVLHPR--TII  190 (277)
Q Consensus       116 G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~-e~~~l~~~g--~~v~~p~--a~~  190 (277)
                      |++.++   ++|.+|+.+|.+|+|++++++|||+|||+.      ++++|++++.. |+.++...+  ..+|.|+  ++.
T Consensus       204 G~~~~i---~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~------~~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~  274 (460)
T 3s6g_A          204 GTLVNI---NADVAVRALVHALQPYKVVFLTGTGGLLDE------DGDILSSINLATDFGDLMQADWVNGGMRLKLEEIK  274 (460)
T ss_dssp             CCEEEE---CHHHHHHHHHHHHCCSEEEEECSSCSCBCT------TSSBCCEEEHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred             CcEEec---CHHHHHHHHHHHcCCCEEEEEeCCccccCC------CCeecceeCcHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence            998876   589999999999999999999999999974      47899999996 888887643  4688885  556


Q ss_pred             HHHhCCC-cEEEEeccCC----------CCCeeEEeCC
Q 023778          191 PVMRYDI-PIVIRNIFNL----------SVPGIMICRP  217 (277)
Q Consensus       191 ~a~~~~i-~v~I~n~~~~----------~~~GT~I~~~  217 (277)
                      .+.+ ++ ++.+.++..|          +..||+|.+.
T Consensus       275 ~a~~-gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~~  311 (460)
T 3s6g_A          275 RLLD-DLPLSSSVSITRPSELARELFTHAGSGTLIRRG  311 (460)
T ss_dssp             HHHH-TSCTTCEEEEECGGGHHHHHHSSCCSSEEEECC
T ss_pred             HHHh-CCCcEEEEEeCCCcHHHHHHhcCCCCceEEEcC
Confidence            6666 55 4777776543          4689999876

>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}

Probab=99.50  E-value=1.4e-14  Score=139.01  Aligned_cols=166  Identities=13%  Similarity=0.121  Sum_probs=119.7

Q ss_pred             hHHHHHh-hhcHHHHHHHHHHHHHHCCCCeEEEccccce--eecCCCCC---C-cCCCchHHHHHHHHHhhcCCCceEEe
Q 023778           34 SFTDFVV-GHGELWSAQMLAAVVRKNGIDCKWMDTREVL--IVNPTSSN---Q-VDPDFSESEKRLEKWFSQSPSNTIIA  106 (277)
Q Consensus        34 ~~~~~v~-s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~--~~~~~~~g---~-~~~~~~~~~~~i~~~l~~~~~~VpVv  106 (277)
                      ...+.+. +.| .++. .++++|.++|++|+++.+..+.  ..+...+|   + ..++.    +.++.+++  .|.|||+
T Consensus       127 ~~l~vv~~~~g-~vn~-~Lv~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~----~~i~~lL~--~g~IpVi  198 (467)
T 3s6k_A          127 HALAIVRKVFQ-ASNL-KLVEALQQNGARATSITGGVFEAEYLNRDTYGLVGEVKAVNL----APIEASLQ--AGSIPVI  198 (467)
T ss_dssp             HHHHHHHHHHH-HHHH-HHHHHHHHHTCCBCCCCSSSBCCCBSCSSSSBSBBCCCCBCC----HHHHTHHH--HTCBCCC
T ss_pred             HHHHHHHHHHH-HHHH-HHHHHHHhCCCCceEEcCccEEEEeccCcccCccceEEEEcH----HHHHHHHH--CCCEEEE
Confidence            3344443 356 4555 4555999999999999885441  11222333   2 24555    78899998  8899999


Q ss_pred             cCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHH-HHHHHHhhc--CCc
Q 023778          107 TGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ-EAWEMSYFG--ANV  183 (277)
Q Consensus       107 ~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~-e~~~l~~~g--~~v  183 (277)
                      ++. +.+..|++.++   ++|++|+.+|.+|+|++++|+|||+|||+.      ++++|++++.. |+.++...+  ..+
T Consensus       199 ~pv-g~~~~G~~~~i---~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~------~~~lI~~i~~~~e~~~l~~~~~~tGG  268 (467)
T 3s6k_A          199 TSL-GETPSGQILNV---NADFAANELVQELQPYKIIFLTGTGGLLDA------EGKLIDSINLSTEYDHLMQQPWINGG  268 (467)
T ss_dssp             CSC-CCCSSSCCCBC---CHHHHHHHHHHHHCCSSCCCCCSSCSCCCS------SCCCCCCCCTTTTTHHHHTSSSCCSH
T ss_pred             ECc-eECCCCcEEec---CHHHHHHHHHHhcCCCEEEEEecccceeCC------CCCCccccChHHHHHHHHhcCCCCCc
Confidence            953 55677888776   589999999999999999999999999974      46789999985 777776533  578


Q ss_pred             chHH--HHHHHHhCCCcEEEEeccCC----------CCCeeEEeCC
Q 023778          184 LHPR--TIIPVMRYDIPIVIRNIFNL----------SVPGIMICRP  217 (277)
Q Consensus       184 ~~p~--a~~~a~~~~i~v~I~n~~~~----------~~~GT~I~~~  217 (277)
                      |.|+  ++..+.+...++.+.++..|          +..||+|.+.
T Consensus       269 M~~Kl~aa~~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i~~~  314 (467)
T 3s6k_A          269 MRVKIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLVRRG  314 (467)
T ss_dssp             HHHHHHHHHHHHTTSCSSCCBCCCCTTTHHHHHHSSCTTSCCBCCC
T ss_pred             hHHHHHHHHHHHhCCCcEEEEEeCCchHHHHHHhcCCCcceEEeCC
Confidence            8885  56666664335777776554          3579999875

>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}

Probab=99.34  E-value=7.5e-12  Score=115.31  Aligned_cols=119  Identities=15%  Similarity=0.164  Sum_probs=87.7

Q ss_pred             HHHHHHhhcCCCceEEecCc--cccC-----CCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCC
Q 023778           90 KRLEKWFSQSPSNTIIATGF--IAST-----PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA  162 (277)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~--i~~~-----~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a  162 (277)
                      +.+..+++  .+.|||..|.  ++..     .+|...+   .++|++|+.+|.+++||.++|+|||||||+.+|+  |++
T Consensus       194 ~~I~~L~~--~g~Ivi~~ggggipv~~~~~~~~G~~~v---id~D~~Aa~lA~~l~Ad~LiiLTdV~gv~~~~~~--~~~  266 (332)
T 4axs_A          194 DAIKQNVN--NGCVCIVGGGGGIPTIIQDNQYIGVDGV---IDKDFALAKIADAVNADIFVVLTAVDYVYVDFNK--PTQ  266 (332)
T ss_dssp             HHHHHHHH--TTCEEECCGGGCEEEEESSSCEEECSSC---CCHHHHHHHHHHHTTCSEEEEECSCSSCEESTTS--TTC
T ss_pred             HHHHHhhc--CCeEEEecccCCCCccccCCcccCceee---echHHHHHHHHHHhCCceEEEEecCCceEcCCCC--cch
Confidence            66788887  7888877552  1111     1222222   4689999999999999999999999999998876  789


Q ss_pred             eEEeeeCHHHHHHHHhhc---CCcchHH--HHHHHHhCCC--cEEEEeccC-----CCCCeeEEe
Q 023778          163 VILRTLSYQEAWEMSYFG---ANVLHPR--TIIPVMRYDI--PIVIRNIFN-----LSVPGIMIC  215 (277)
Q Consensus       163 ~~i~~is~~e~~~l~~~g---~~v~~p~--a~~~a~~~~i--~v~I~n~~~-----~~~~GT~I~  215 (277)
                      ++|++++.+|+.++...|   ...|-||  |+..+.+++.  .++|.+..+     ....||+|.
T Consensus       267 ~~i~~it~~e~~~~~~~g~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~~~~~~~~l~g~~GT~Iv  331 (332)
T 4axs_A          267 KALKTVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIADLSKVEDALKGLSGTKII  331 (332)
T ss_dssp             EECSSCBHHHHHHHHHTTCSCTTTTHHHHHHHHHHHTTCTTCEEEEECSTTHHHHTTTSSSEEEB
T ss_pred             hhcccCCHHHHHHHHHCCCcCcCCcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHCCCCCcEEe
Confidence            999999999999997644   5679996  5666666654  566755321     124699985

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=98.69  E-value=8.2e-08  Score=80.64  Aligned_cols=96  Identities=18%  Similarity=0.215  Sum_probs=68.5

Q ss_pred             CCcchHHHHHHHHhCCCc--EEEEeccCCCCCeeEEeCCCCCCCc-----chh--hccCCceeeEeecCeeEEEEecCCC
Q 023778          181 ANVLHPRTIIPVMRYDIP--IVIRNIFNLSVPGIMICRPPVDENE-----DEQ--IIDSPVKGFATIDNLALVNVEGTGM  251 (277)
Q Consensus       181 ~~v~~p~a~~~a~~~~i~--v~I~n~~~~~~~GT~I~~~~~~~~~-----~~~--~~~~~v~~i~~~~nia~Isvvg~gm  251 (277)
                      ..++-.+.+.++.++||+  +.+.|.++|+..+|.|+-.-...+.     ..+  ......+.+++.+++++|+++|.||
T Consensus        26 ~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~~~a~~~l~~~~~~~~~~~v~~~~~~a~VsvVG~gm  105 (178)
T 2dtj_A           26 KPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGM  105 (178)
T ss_dssp             STTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHHHHHHHHHHTTTTTTTCSEEEEESCEEEEEEEEECC
T ss_pred             CccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccHHHHHHHHHHHHHhcCCCeEEEeCCeEEEEEEcCCc
Confidence            455666788899999965  5556666665556666421100000     000  0112356789999999999999999


Q ss_pred             CCchhHHHHHHHHHHhCCCcEEEEe
Q 023778          252 AGVPGTANAIFGAVKDVGANVIMIS  276 (277)
Q Consensus       252 ~~~~gv~a~if~~L~~~~I~V~~is  276 (277)
                      .+.||+++|+|++|+++||||.||+
T Consensus       106 ~~~~Gv~arif~aLa~~~InI~~is  130 (178)
T 2dtj_A          106 KSHPGVTAEFMEALRDVNVNIELIS  130 (178)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             ccCccHHHHHHHHHHHCCCCEEEEE
Confidence            9999999999999999999999985

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=98.59  E-value=4.7e-08  Score=83.85  Aligned_cols=96  Identities=19%  Similarity=0.133  Sum_probs=63.5

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEeccCCC-CCee-EEeCC--CCCCCcch----h-hccCCceeeEeecCeeEEEEecCCC
Q 023778          181 ANVLHPRTIIPVMRYDIPIVIRNIFNLS-VPGI-MICRP--PVDENEDE----Q-IIDSPVKGFATIDNLALVNVEGTGM  251 (277)
Q Consensus       181 ~~v~~p~a~~~a~~~~i~v~I~n~~~~~-~~GT-~I~~~--~~~~~~~~----~-~~~~~v~~i~~~~nia~Isvvg~gm  251 (277)
                      ..++-.+.+..+.++||++-.......+ ..++ .++-.  ..+.....    + ........+.+++++++|+++|.||
T Consensus        46 ~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~~~~~~~l~~~~~~~~~~~v~~~~~iakVSvVG~GM  125 (200)
T 4go7_X           46 IPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLLYDDHIGKVSLIGAGM  125 (200)
T ss_dssp             STTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGHHHHHHHHHTTHHHHCCSEEEEECCEEEEEEEEESC
T ss_pred             CccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhHHHHHHHHHHHHhhhceeeEEEecCeeeeeeecccc
Confidence            3455567778888889886554332211 1122 12111  00000000    0 0112456889999999999999999


Q ss_pred             CCchhHHHHHHHHHHhCCCcEEEEe
Q 023778          252 AGVPGTANAIFGAVKDVGANVIMIS  276 (277)
Q Consensus       252 ~~~~gv~a~if~~L~~~~I~V~~is  276 (277)
                      .++||+++|+|++|+++||||.||+
T Consensus       126 ~~~~GVaak~F~aLa~~~INI~mIs  150 (200)
T 4go7_X          126 RSHPGVTATFCEALAAVGVNIELIS  150 (200)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             ccCCCcHHHHHHHHHHCCCCEEEEE
Confidence            9999999999999999999999997

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=98.53  E-value=4.8e-08  Score=83.78  Aligned_cols=48  Identities=33%  Similarity=0.469  Sum_probs=45.2

Q ss_pred             ccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          228 IDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       228 ~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +++.|++|+.++|.++|+|.|  |.+.||+++|+|++|+++||||+||+|
T Consensus        22 E~~vVtGIa~~~~~a~Iti~g--~~~~pG~aa~IF~~La~~~InVDmI~Q   69 (200)
T 4go7_X           22 EDPILTGVAHDRSEAKVTIVG--LPDIPGYAAKVFRAVADADVNIDMVLQ   69 (200)
T ss_dssp             CSCEEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHTTCCCCCEEC
T ss_pred             ccCcEEEEEccCCEEEEEEec--CCCCccHHHHHHHHHHHhCcceEEEee
Confidence            456799999999999999986  899999999999999999999999998

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=98.53  E-value=6.2e-08  Score=79.66  Aligned_cols=50  Identities=14%  Similarity=0.114  Sum_probs=46.8

Q ss_pred             ccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          228 IDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       228 ~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      ..+.+++|+.++|+++|+|.|.+|.+.||+++++|+.|+++||+|+||+|
T Consensus         5 ~~~~v~gIa~~~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~   54 (157)
T 3mah_A            5 EKDCIKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVAT   54 (157)
T ss_dssp             --CCCCEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEEC
T ss_pred             CCCceEEEEecCCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEe
Confidence            45789999999999999999999999999999999999999999999987

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=98.46  E-value=2.8e-07  Score=77.75  Aligned_cols=97  Identities=22%  Similarity=0.206  Sum_probs=66.4

Q ss_pred             cCCcchHHHHHHHHhCCCcEEEEeccCCCC-Ce-eEEe---CCCCCCC----cchhhccCCceeeEeecCeeEEEEecCC
Q 023778          180 GANVLHPRTIIPVMRYDIPIVIRNIFNLSV-PG-IMIC---RPPVDEN----EDEQIIDSPVKGFATIDNLALVNVEGTG  250 (277)
Q Consensus       180 g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~-~G-T~I~---~~~~~~~----~~~~~~~~~v~~i~~~~nia~Isvvg~g  250 (277)
                      +..++..+.+..+.++||++.......++. .| +.|+   +...-..    +..-...-....+.+++++++|+++|.|
T Consensus        26 ~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~~~~el~~~~v~~~~~va~VsvVG~g  105 (181)
T 3s1t_A           26 DIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLLYDDHIGKVSLIGAG  105 (181)
T ss_dssp             SSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHHTHHHHCCSEEEEESCEEEEEEEEEC
T ss_pred             CCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHHHHHhcCcceEEEeCCEEEEEEEecc
Confidence            455667778888999999876554433321 22 1221   2211000    0000001135678999999999999999


Q ss_pred             CCCchhHHHHHHHHHHhCCCcEEEEe
Q 023778          251 MAGVPGTANAIFGAVKDVGANVIMIS  276 (277)
Q Consensus       251 m~~~~gv~a~if~~L~~~~I~V~~is  276 (277)
                      |.+.||+++|+|++|+++||||.||+
T Consensus       106 m~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A          106 MRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             cccCchHHHHHHHHHHHCCCcEEEEE
Confidence            99999999999999999999999986

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=98.32  E-value=4.4e-07  Score=75.25  Aligned_cols=95  Identities=20%  Similarity=0.109  Sum_probs=64.0

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEeccCCCCCe----eEEeCCCCCCC--cchh--hccCCceeeEeecCeeEEEEecCCCC
Q 023778          181 ANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG----IMICRPPVDEN--EDEQ--IIDSPVKGFATIDNLALVNVEGTGMA  252 (277)
Q Consensus       181 ~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~G----T~I~~~~~~~~--~~~~--~~~~~v~~i~~~~nia~Isvvg~gm~  252 (277)
                      ..++-.+.+..+.++||++...+...... |    +.+.+......  ...+  .....++.+++++++++|+|+|.+|.
T Consensus        36 ~~G~~~~if~~La~~~Invd~i~~s~~~~-g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~i~~~~~~a~vsvvG~~m~  114 (167)
T 2re1_A           36 KPGVAYQILGAVADANIEVDMIIQNVGSE-GTTDFSFTVPRGDYKQTLEILSERQDSIGAASIDGDDTVCKVSAVGLGMR  114 (167)
T ss_dssp             CTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCSEEEEESSEEEEEEECSSCT
T ss_pred             CcCHHHHHHHHHHHcCCeEEEEEcCCCCC-CeeEEEEEEechHHHHHHHHHHHHHHHcCCceEEecCCEEEEEEECCCcC
Confidence            34566678888899999876654432211 3    12223211000  0000  01123567899999999999999999


Q ss_pred             CchhHHHHHHHHHHhCCCcEEEEe
Q 023778          253 GVPGTANAIFGAVKDVGANVIMIS  276 (277)
Q Consensus       253 ~~~gv~a~if~~L~~~~I~V~~is  276 (277)
                      +.||+++|+|++|+++||||.|++
T Consensus       115 ~~~Gv~a~i~~aL~~~~InI~~is  138 (167)
T 2re1_A          115 SHVGVAAKIFRTLAEEGINIQMIS  138 (167)
T ss_dssp             TCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred             CCcCHHHHHHHHHHHCCCcEEEEE
Confidence            999999999999999999999875

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=98.31  E-value=4.6e-07  Score=75.11  Aligned_cols=95  Identities=17%  Similarity=0.174  Sum_probs=62.5

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEeccCCC-CCe-eE---EeCCCCCCC-c-chhh--ccCCceeeEeecCeeEEEEecCCC
Q 023778          181 ANVLHPRTIIPVMRYDIPIVIRNIFNLS-VPG-IM---ICRPPVDEN-E-DEQI--IDSPVKGFATIDNLALVNVEGTGM  251 (277)
Q Consensus       181 ~~v~~p~a~~~a~~~~i~v~I~n~~~~~-~~G-T~---I~~~~~~~~-~-~~~~--~~~~v~~i~~~~nia~Isvvg~gm  251 (277)
                      ..++-.+.+..+.++||++...+...+. ..| +.   +.+...... . ....  ..... .+.+.+++++++++|.||
T Consensus        27 ~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~~~~~~~~-~v~~~~~~a~vsvVG~gm  105 (167)
T 2dt9_A           27 QPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEPVLAEIGG-EAILRPDIAKVSIVGVGL  105 (167)
T ss_dssp             STTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHHHHHHHCC-EEEEECSEEEEEEEESSG
T ss_pred             CCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHHHHHHhCC-cEEEeCCEEEEEEECCCc
Confidence            3455567778888889987655443221 123 12   222111000 0 0000  00123 788999999999999999


Q ss_pred             CCchhHHHHHHHHHHhCCCcEEEEe
Q 023778          252 AGVPGTANAIFGAVKDVGANVIMIS  276 (277)
Q Consensus       252 ~~~~gv~a~if~~L~~~~I~V~~is  276 (277)
                      .+.||+++|+|++|+++||||.||+
T Consensus       106 ~~~~Gv~a~~f~aL~~~~InI~~is  130 (167)
T 2dt9_A          106 ASTPEVPAKMFQAVASTGANIEMIA  130 (167)
T ss_dssp             GGSTHHHHHHHHHHHHTTCCCCEEE
T ss_pred             ccCcCHHHHHHHHHHHCCCCEEEEE
Confidence            9999999999999999999999985

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=98.14  E-value=1.5e-06  Score=83.07  Aligned_cols=96  Identities=25%  Similarity=0.241  Sum_probs=65.9

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCC---cchhhc-cCCceeeEeecCeeEEEEecCCCCCchh
Q 023778          181 ANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDEN---EDEQII-DSPVKGFATIDNLALVNVEGTGMAGVPG  256 (277)
Q Consensus       181 ~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~---~~~~~~-~~~v~~i~~~~nia~Isvvg~gm~~~~g  256 (277)
                      ..++..+.+..+.+++|++...+... ....-.+........   ...+.. .-....+.+++++++|+++|.||.++||
T Consensus       311 ~~g~~~~if~~l~~~~i~vd~i~~~~-~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v~v~~~vA~VSvVG~gM~~~~G  389 (446)
T 3tvi_A          311 EVGFCRKILSILEMYGVSFEHMPSGV-DSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIEIHPNMALVATVGTGMAKTKG  389 (446)
T ss_dssp             STTHHHHHHHHHHTTTCCEEEBCEET-TEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEEEEEEEEEEEEEECGGGSSCTT
T ss_pred             cHHHHHHHHHHHHHcCCcEEEEecCC-CEEEEEEecchHHHHHHHHHHHHHHhcCCCcEEEeCCeEEEEEECCCccCChh
Confidence            44566678889999999987664321 111112211110000   000001 1134578999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEeC
Q 023778          257 TANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       257 v~a~if~~L~~~~I~V~~isq  277 (277)
                      +++|+|++|+++||||.||+|
T Consensus       390 vaarif~aLa~~~InI~mIsq  410 (446)
T 3tvi_A          390 IANKIFTALSKENVNIRMIDQ  410 (446)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEE
T ss_pred             HHHHHHHHHHHCCCCEEEEEe
Confidence            999999999999999999997

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=98.09  E-value=1.7e-06  Score=71.64  Aligned_cols=47  Identities=43%  Similarity=0.541  Sum_probs=43.4

Q ss_pred             cCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          229 DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       229 ~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      .+.+++|+.++|+++|+|.|  |.+.||+++++|+.|+++||+|+||+|
T Consensus        13 ~~~V~gIa~~~~~~~i~v~~--~~~~~G~~~~if~~La~~~Invd~i~~   59 (167)
T 2re1_A           13 RAAVTGIAFDKNQARINVRG--VPDKPGVAYQILGAVADANIEVDMIIQ   59 (167)
T ss_dssp             --CCCEEEEECCCEEEEEEE--EECCTTHHHHHHHHHHTTTCCCCCEEE
T ss_pred             CCCeEEEEecCCEEEEEEec--CCCCcCHHHHHHHHHHHcCCeEEEEEc
Confidence            45799999999999999998  889999999999999999999999986

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=98.08  E-value=1e-06  Score=72.34  Aligned_cols=90  Identities=14%  Similarity=0.101  Sum_probs=55.4

Q ss_pred             cchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHH
Q 023778          183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIF  262 (277)
Q Consensus       183 v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if  262 (277)
                      ++..+.+..+.++||++...+... ... |...++...-....+.. .....+++.+++++|+++|.||.+.||+++|+|
T Consensus        33 g~~~~if~~La~~~I~vd~I~~s~-~~I-sf~v~~~~~~~~il~~l-~~~~~v~~~~~~a~vsvvG~gm~~~~gv~a~~f  109 (157)
T 3mah_A           33 HFMRKLFEIFEFYQEPVDMVATSE-VGV-SLTIDNDKNLPDIVRAL-SDIGDVTVDKDMVIICIVGDMEWDNVGFEARII  109 (157)
T ss_dssp             HHHHHHHHHHHHTTCCCSCEECCS-SEE-EEEESCCTTHHHHHHHH-TTTEEEEEEEEEEEEEEEC------CCHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCEEEEEecC-CEE-EEEECChHHHHHHHHHH-hccCeEEEeCCeEEEEEECCCcccCccHHHHHH
Confidence            344567788889999865554332 111 22223221000000011 125788999999999999999999999999999


Q ss_pred             HHHHhCCCcEEEEeC
Q 023778          263 GAVKDVGANVIMISQ  277 (277)
Q Consensus       263 ~~L~~~~I~V~~isq  277 (277)
                      ++|+  +|||.||+|
T Consensus       110 ~aL~--~Ini~~isq  122 (157)
T 3mah_A          110 NALK--GVPVRMISY  122 (157)
T ss_dssp             HTTT--TSCCSEEEE
T ss_pred             HHhC--CCCeEEEee
Confidence            9999  999999987

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=98.01  E-value=3.7e-06  Score=83.10  Aligned_cols=45  Identities=31%  Similarity=0.498  Sum_probs=42.8

Q ss_pred             ceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEe
Q 023778          232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS  276 (277)
Q Consensus       232 v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~is  276 (277)
                      ...+.+++++|+|++||.||.++||+++|+|++|+++||||.||+
T Consensus       518 ~~~v~~~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis  562 (600)
T 3l76_A          518 DAAIVVNKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA  562 (600)
T ss_dssp             TCEEEEECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred             CceEEEeCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence            357899999999999999999999999999999999999999997

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=97.92  E-value=9e-06  Score=78.84  Aligned_cols=95  Identities=13%  Similarity=0.081  Sum_probs=65.2

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCC------cchhh-ccCCceeeEeecCeeEEEEecCCCCC
Q 023778          181 ANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDEN------EDEQI-IDSPVKGFATIDNLALVNVEGTGMAG  253 (277)
Q Consensus       181 ~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~------~~~~~-~~~~v~~i~~~~nia~Isvvg~gm~~  253 (277)
                      ..++..+.+..+.+++|++....+.. ....-.|........      +.... .-.....+.+++|+++|+++|. |.+
T Consensus       354 ~~g~~~~if~~la~~~I~vd~I~sse-~sis~~v~~~~~~~~~~~~~~l~~~~~el~~~~~v~~~~~~a~VsiVG~-m~~  431 (510)
T 2cdq_A          354 QVGFLAKVFSIFEELGISVDVVATSE-VSISLTLDPSKLWSRELIQQELDHVVEELEKIAVVNLLKGRAIISLIGN-VQH  431 (510)
T ss_dssp             CTTHHHHHHHHHHHTTCCEEEEEEET-TEEEEEECCGGGSSSCCCHHHHHHHHHHHTTTSEEEEEEEEEEEEEEEC-GGG
T ss_pred             cccHHHHHHHHHHHcCCcEEEEEeCC-CeEEEEEechHhhhhhHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEEEE-CCC
Confidence            34566788899999999976664331 112212211110000      00000 0123467899999999999999 999


Q ss_pred             chhHHHHHHHHHHhCCCcEEEEeC
Q 023778          254 VPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       254 ~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +||+++|+|++|+++||||.||+|
T Consensus       432 ~~Gvaa~~f~aL~~~~InI~mIsq  455 (510)
T 2cdq_A          432 SSLILERAFHVLYTKGVNVQMISQ  455 (510)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSEEEE
T ss_pred             ChhHHHHHHHHHHHCCCCEEEEEe
Confidence            999999999999999999999997

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=97.80  E-value=1.6e-05  Score=75.30  Aligned_cols=95  Identities=20%  Similarity=0.239  Sum_probs=63.2

Q ss_pred             CcchHHHHHHHHhCCCcEEEEeccCCC-CCe-eEE---eCCCCCCC-c-chh-h-ccCCceeeEeecCeeEEEEecCCCC
Q 023778          182 NVLHPRTIIPVMRYDIPIVIRNIFNLS-VPG-IMI---CRPPVDEN-E-DEQ-I-IDSPVKGFATIDNLALVNVEGTGMA  252 (277)
Q Consensus       182 ~v~~p~a~~~a~~~~i~v~I~n~~~~~-~~G-T~I---~~~~~~~~-~-~~~-~-~~~~v~~i~~~~nia~Isvvg~gm~  252 (277)
                      .++..+.+..+.+++|++........+ ..| +.|   .+...... . ..+ . ..-....+.+++|+++|+|+|.+|.
T Consensus       276 ~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v~~~~~~a~vsvVG~gm~  355 (421)
T 3ab4_A          276 PGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMK  355 (421)
T ss_dssp             TTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEEEEECCEEEEEEECGGGT
T ss_pred             ccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceEEEeCCeEEEEEEccCcc
Confidence            344557788899999997665421111 013 222   22211000 0 000 0 1113457899999999999999999


Q ss_pred             CchhHHHHHHHHHHhCCCcEEEEe
Q 023778          253 GVPGTANAIFGAVKDVGANVIMIS  276 (277)
Q Consensus       253 ~~~gv~a~if~~L~~~~I~V~~is  276 (277)
                      ++||+++|+|++|+++||||.||+
T Consensus       356 ~~~Gv~a~~f~aL~~~~InI~~is  379 (421)
T 3ab4_A          356 SHPGVTAEFMEALRDVNVNIELIS  379 (421)
T ss_dssp             SCTTHHHHHHHHHHHTTCCCCEEE
T ss_pred             cCccHHHHHHHHHHHCCCCEEEEE
Confidence            999999999999999999999985

>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*

Probab=97.42  E-value=3.3e-05  Score=73.76  Aligned_cols=44  Identities=25%  Similarity=0.410  Sum_probs=40.9

Q ss_pred             ceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       232 v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +..+.+++|+++|+++|.||.++||+++|+|++|++  |||.||+|
T Consensus       377 ~~~v~~~~~~a~vsvVG~gm~~~~gv~~~~f~aL~~--ini~mIsq  420 (449)
T 2j0w_A          377 LCRVEVEEGLALVALIGNDLSKACGVGKEVFGVLEP--FNIRMICY  420 (449)
T ss_dssp             HSCEEEEEEEEEEEEEESSCTTSSSHHHHHHSSCTT--SCCCEEEE
T ss_pred             CCeEEEeCCeEEEEEECCCccccccHHHHHHHHHhC--CCeEEEEe
Confidence            457899999999999999999999999999999965  99999987

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=96.51  E-value=0.0046  Score=49.18  Aligned_cols=82  Identities=16%  Similarity=0.201  Sum_probs=49.1

Q ss_pred             HHHHHHHHhCCCcEEEEeccCCCCCe-eEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHH
Q 023778          186 PRTIIPVMRYDIPIVIRNIFNLSVPG-IMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGA  264 (277)
Q Consensus       186 p~a~~~a~~~~i~v~I~n~~~~~~~G-T~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~  264 (277)
                      .+.+..+.++||++...........| +.+...+.+. ..........       .....+++|.+|.++||+++++|++
T Consensus        21 ~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~d~~~-a~~~L~~~G~-------~v~~~svv~v~~~d~pGvla~i~~~   92 (144)
T 2f06_A           21 TEVTEVLAKENINLSALCIAENADFGILRGIVSDPDK-AYKALKDNHF-------AVNITDVVGISCPNVPGALAKVLGF   92 (144)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESCHHH-HHHHHHHTTC-------CEEEEEEEEEEEESSTTHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeCCHHH-HHHHHHHcCC-------eEeeeeEEEEEeCCCCcHHHHHHHH
Confidence            45667778889987655433222346 3454221100 0000000111       1233478888999999999999999


Q ss_pred             HHhCCCcE-EEE
Q 023778          265 VKDVGANV-IMI  275 (277)
Q Consensus       265 L~~~~I~V-~~i  275 (277)
                      |+++|||| .|+
T Consensus        93 L~~~~InI~~~~  104 (144)
T 2f06_A           93 LSAEGVFIEYMY  104 (144)
T ss_dssp             HHHTTCCEEEEE
T ss_pred             HHHCCCCEEEEE
Confidence            99999999 444

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=89.11  E-value=0.53  Score=33.62  Aligned_cols=34  Identities=29%  Similarity=0.473  Sum_probs=29.3

Q ss_pred             eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      ...|++.|.   ++||+++++.+.|+++|+||.-++|
T Consensus         5 ~~~l~v~~~---DrpGila~vt~~la~~~~NI~~i~~   38 (91)
T 1zpv_A            5 KAIITVVGK---DKSGIVAGVSGKIAELGLNIDDISQ   38 (91)
T ss_dssp             EEEEEEEES---CCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred             eEEEEEEEC---CCCCHHHHHHHHHHHcCCCEEEEEe
Confidence            356888876   6999999999999999999987764

>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}

Probab=82.37  E-value=5.8  Score=32.45  Aligned_cols=69  Identities=13%  Similarity=0.156  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCC
Q 023778           46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG  125 (277)
Q Consensus        46 ~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrgg  125 (277)
                      -++..+++.|++.|+.+....     ++.+        |.+...+.++++++  ...+.|++|-++.+.           
T Consensus        23 tN~~~l~~~L~~~G~~v~~~~-----iv~D--------d~~~I~~~l~~a~~--~~DlVittGG~g~~~-----------   76 (172)
T 3kbq_A           23 TNAAFIGNFLTYHGYQVRRGF-----VVMD--------DLDEIGWAFRVALE--VSDLVVSSGGLGPTF-----------   76 (172)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEE-----EECS--------CHHHHHHHHHHHHH--HCSEEEEESCCSSST-----------
T ss_pred             HHHHHHHHHHHHCCCEEEEEE-----EeCC--------CHHHHHHHHHHHHh--cCCEEEEcCCCcCCc-----------
Confidence            367789999999999865532     2232        34445567777776  457788877555433           


Q ss_pred             chHHHHHHHHHhCcc
Q 023778          126 SDFSAAIMGALLRAH  140 (277)
Q Consensus       126 sD~~A~~lA~~l~A~  140 (277)
                      -|++.-.+|.+++.+
T Consensus        77 ~D~T~ea~a~~~~~~   91 (172)
T 3kbq_A           77 DDMTVEGFAKCIGQD   91 (172)
T ss_dssp             TCCHHHHHHHHHTCC
T ss_pred             ccchHHHHHHHcCCC
Confidence            389999999999954

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=81.89  E-value=1.2  Score=36.96  Aligned_cols=35  Identities=23%  Similarity=0.347  Sum_probs=30.7

Q ss_pred             CeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       240 nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +...|+|.|.   ++||++++|.+.|+++|+||.-+.|
T Consensus        92 ~~~iltv~g~---DrpGiva~Vt~~La~~g~nI~~~~~  126 (195)
T 2nyi_A           92 REYELYVEGP---DSEGIVEAVTAVLAKKGANIVELET  126 (195)
T ss_dssp             EEEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred             cEEEEEEEeC---CCcCHHHHHHHHHHHcCCCEEEcee
Confidence            4578999986   5999999999999999999987765

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=81.53  E-value=1.5  Score=30.70  Aligned_cols=32  Identities=25%  Similarity=0.384  Sum_probs=26.2

Q ss_pred             eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEe
Q 023778          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS  276 (277)
Q Consensus       242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~is  276 (277)
                      ..|.+.+.   ++||+++++.+.|++.|+||.-+.
T Consensus         6 ~~l~v~~~---Dr~G~L~~I~~~la~~~inI~~i~   37 (88)
T 2ko1_A            6 AGIRIVGE---DKNGMTNQITGVISKFDTNIRTIV   37 (88)
T ss_dssp             EEEEEEEE---CCTTHHHHHHHHHTTSSSCEEEEE
T ss_pred             EEEEEEEE---CCCcHHHHHHHHHHHCCCCeEEEE
Confidence            34566643   799999999999999999997665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	277
d2j0wa1	292	c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli	1e-41
d2cdqa1	304	c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Ar	3e-38
d2hmfa1	302	c.73.1.3 (A:2-303) Aspartokinase {Methanococcus ja	7e-36
d2a1fa1	236	c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophi	2e-10
d2cdqa2	91	d.58.18.10 (A:329-419) Aspartokinase {Thale cress	6e-10
d2hmfa3	100	d.58.18.10 (A:304-403) Aspartokinase {Methanococcu	1e-09
d2ij9a1	219	c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeog	2e-09
d2j0wa2	91	d.58.18.10 (A:295-385) Aspartokinase {Escherichia	5e-09
d1ybda1	236	c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseri	7e-08
d2hmfa2	67	d.58.18.10 (A:404-470) Aspartokinase {Methanococcu	1e-06
d2j0wa3	64	d.58.18.10 (A:386-449) Aspartokinase {Escherichia	5e-06
d2brxa1	225	c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococc	2e-05
d1z9da1	238	c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptoc	4e-05
d2cdqa3	75	d.58.18.10 (A:420-494) Aspartokinase {Thale cress	0.002

>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

 Score =  142 bits (359), Expect = 1e-41
 Identities = 66/194 (34%), Positives = 104/194 (53%), Gaps = 6/194 (3%)

Query: 32  TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKR 91
           + + TD +V HGEL S  +   ++R+  +  +W D R+V+  N           + +E  
Sbjct: 105 SPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELA 164

Query: 92  LEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGV 151
             +   +     +I  GFI S      TTL R GSD++AA++   L A +V IWTDV G+
Sbjct: 165 ALQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGI 224

Query: 152 YSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG 211
           Y+ DPR VS A  +  +++ EA EM+ FGA VLHP T++P +R DIP+ + +  +    G
Sbjct: 225 YTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGG 284

Query: 212 IMICRPPVDENEDE 225
            ++C      N+ E
Sbjct: 285 TLVC------NKTE 292

>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 304

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  134 bits (337), Expect = 3e-38
 Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 3/183 (1%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIV---NPTSSNQVDPDFSESEKRLE 93
           D++V  GE  S ++ AA +   G+  +  D  E+  +   + T+ + ++  +    KRL 
Sbjct: 117 DYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLY 176

Query: 94  KWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYS 153
             +   P+  I+             TTL R GSD +A  +G  L   ++ +W DVDGV +
Sbjct: 177 DDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLT 236

Query: 154 ADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIM 213
            DP     A  +  L++ EA E++YFGA VLHP+++ P    +IP+ ++N +N   PG +
Sbjct: 237 CDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTI 296

Query: 214 ICR 216
           I +
Sbjct: 297 ITK 299

>d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

 Score =  128 bits (321), Expect = 7e-36
 Identities = 75/214 (35%), Positives = 109/214 (50%), Gaps = 3/214 (1%)

Query: 3   QVRNYVSELSYEFIRSTYNFLSNVDS-GHATESFTDFVVGHGELWSAQMLAAVVRKNGID 61
           +++  V ++    I      L  V   G  T    D+++  GE  S+ +L+  +R  G  
Sbjct: 87  EIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEK 146

Query: 62  CKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTL 121
              ++  E  I+   +         E ++RL     +      + TGFI +T +   TTL
Sbjct: 147 SIALEGGEAGIITDNNFGSARVKRLEVKERLLPLLKEG--IIPVVTGFIGTTEEGYITTL 204

Query: 122 KRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGA 181
            R GSD+SAA++G  L A  + IWTDV GVY+ DPR V  A  +  LSY EA E++YFGA
Sbjct: 205 GRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGA 264

Query: 182 NVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215
            VLHPRTI P M   IPI+++N F     G +I 
Sbjct: 265 KVLHPRTIEPAMEKGIPILVKNTFEPESEGTLIT 298

>d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Haemophilus influenzae [TaxId: 727]

 Score = 57.7 bits (138), Expect = 2e-10
 Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 12/111 (10%)

Query: 114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEA 173
             +  T      +D +A + G  + A  V   T VDGVY  DP K  +A + + LSY E 
Sbjct: 129 IFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEV 188

Query: 174 WEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSV---------PGIMIC 215
            +       V+          + +PI + N+               G  IC
Sbjct: 189 IDK---ELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTIC 236

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 52.8 bits (127), Expect = 6e-10
 Identities = 8/46 (17%), Positives = 22/46 (47%)

Query: 232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
           +       N+ ++++  T M G  G    +F   +++G +V +++ 
Sbjct: 4   LTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT 49

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 100

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

 Score = 52.1 bits (125), Expect = 1e-09
 Identities = 27/49 (55%), Positives = 34/49 (69%)

Query: 229 DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
           DS VK  +TI N+AL+N+ G GM GV GTA  IF A+ +   NVI+ISQ
Sbjct: 3   DSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQ 51

>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]} Length = 219

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 54.1 bits (129), Expect = 2e-09
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 6/93 (6%)

Query: 117 IPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM 176
           +  T     +D +AA++   ++A      T+VDGVYSADP+  + AV    LS Q+  E+
Sbjct: 107 MGGTFPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEI 166

Query: 177 SYFGANVLHPRTIIPV------MRYDIPIVIRN 203
               +       +I +       R  I   +  
Sbjct: 167 VSRSSAKAGTNVVIDLLAAKIIERSKIKTYVIL 199

>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

 Score = 50.2 bits (120), Expect = 5e-09
 Identities = 9/47 (19%), Positives = 17/47 (36%)

Query: 231 PVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
             +  A   N  L+ +    M    G    +FG +     +V +I+ 
Sbjct: 4   LFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITT 50

>d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Neisseria meningitidis [TaxId: 487]

 Score = 49.7 bits (117), Expect = 7e-08
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQE 172
                 T      +D +AA+ GA +    +   T+VDGVY+ADP+K   A    T+++ E
Sbjct: 127 VIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDE 186

Query: 173 AWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSV 209
           A         V+            + IV+  I     
Sbjct: 187 ALLK---NLKVMDATAFALCRERKLNIVVFGIAKEGS 220

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 67

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

 Score = 43.1 bits (102), Expect = 1e-06
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
            +++V G GM G  G A  IF AV + GAN+ MI+Q
Sbjct: 2   CVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQ 37

>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 64

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

 Score = 41.3 bits (97), Expect = 5e-06
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS 276
           LALV + G  ++   G    +FG ++     +I   
Sbjct: 1   LALVALIGNDLSKACGVGKEVFGVLEPFNIRMICYG 36

>d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           D  AA++   L+A  + + T+VDGVY+ADP+K   A  ++ +  +E  E+   G      
Sbjct: 121 DAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGS 180

Query: 187 RTII------PVMRYDIPIVIRNIFN 206
            ++I       + R  I  ++    +
Sbjct: 181 SSVIDPLAAKIIARSGIKTIVIGKED 206

>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]} Length = 238

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 41.5 bits (96), Expect = 4e-05
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 4/182 (2%)

Query: 26  VDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDF 85
             SG                 +A      V+ +           +++ +      VD   
Sbjct: 40  HVSGVQIALVIGGGNLWRGEPAADAGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRV 99

Query: 86  SESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIW 145
             +               +                     +D +AA+  A + A  + + 
Sbjct: 100 QTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMA 159

Query: 146 T-DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNI 204
              VDGVY+ADP+K + AV    L++ E  +    G  ++        M  DI +V+ N+
Sbjct: 160 KNGVDGVYNADPKKDANAVKFDELTHGEVIKR---GLKIMDATASTLSMDNDIDLVVFNM 216

Query: 205 FN 206
             
Sbjct: 217 NE 218

>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
           A++++ G  +          F  +   G NV MISQ
Sbjct: 2   AIISLIG-NVQHSSLILERAFHVLYTKGVNVQMISQ 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	277
d2cdqa1	304	Aspartokinase {Thale cress (Arabidopsis thaliana)	100.0
d2j0wa1	292	Aspartokinase {Escherichia coli [TaxId: 562]}	100.0
d2hmfa1	302	Aspartokinase {Methanococcus jannaschii [TaxId: 21	100.0
d2brxa1	225	Uridylate kinase PyrH {Pyrococcus furiosus [TaxId:	99.89
d2akoa1	250	Glutamate 5-kinase {Campylobacter jejuni [TaxId: 1	99.88
d2a1fa1	236	Uridylate kinase PyrH {Haemophilus influenzae [Tax	99.87
d2ij9a1	219	Uridylate kinase PyrH {Archaeoglobus fulgidus [Tax	99.86
d1ybda1	236	Uridylate kinase PyrH {Neisseria meningitidis [Tax	99.84
d1z9da1	238	Uridylate kinase PyrH {Streptococcus pyogenes [Tax	99.73
d2bufa1	300	N-acetyl-l-glutamate kinase {Pseudomonas aeruginos	99.65
d2btya1	282	N-acetyl-l-glutamate kinase {Thermotoga maritima [	99.64
d2ap9a1	291	N-acetyl-l-glutamate kinase {Mycobacterium tubercu	99.62
d1e19a_	313	Carbamate kinase {Archaeon Pyrococcus furiosus [Ta	99.41
d1b7ba_	307	Carbamate kinase {Enterococcus faecium [TaxId: 135	99.38
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	99.09
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	99.02
d2j0wa2	91	Aspartokinase {Escherichia coli [TaxId: 562]}	98.88
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	98.75
d1gs5a_	258	N-acetyl-l-glutamate kinase {Escherichia coli [Tax	98.68
d2cdqa3	75	Aspartokinase {Thale cress (Arabidopsis thaliana)	98.43
d2j0wa3	64	Aspartokinase {Escherichia coli [TaxId: 562]}	97.87
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	93.86
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	92.38
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	91.8
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	87.86
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	85.95
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	85.06
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	82.98
d1zhva2	66	Hypothetical protein Atu0741 {Agrobacterium tumefa	82.63

>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.5e-52  Score=380.58  Aligned_cols=203  Identities=29%  Similarity=0.483  Sum_probs=184.0

Q ss_pred             HHHHHHHHHHHhhhc-----CCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHH
Q 023778           14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES   88 (277)
Q Consensus        14 ~~i~~~~~~L~~~~~-----~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~   88 (277)
                      +.+.+.+++|+++++     ++++++.+|+++|+||+||+.+++++|++.|+++.++|++++++++++++++++++...+
T Consensus        89 ~~~~~~~~~l~~~l~~i~~~~~~s~~~~D~ils~GE~lSa~ll~~~L~~~gi~a~~~d~~~~~iit~~~~~~a~~~~~~~  168 (304)
T d2cdqa1          89 SVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATY  168 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCEECSCSTTCCBCTTHH
T ss_pred             hHHHHHHHHHHHHHhhhccccccchhhHHHHHHhHHHHHHHHHHHHHHHcCCceEEEeecccccccccccccccccccch
Confidence            456677777877776     589999999999999999999999999999999999999998777888888877765444


Q ss_pred             HHH----HHHHhhcCCCceEEecCccccC-CCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCe
Q 023778           89 EKR----LEKWFSQSPSNTIIATGFIAST-PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAV  163 (277)
Q Consensus        89 ~~~----i~~~l~~~~~~VpVv~G~i~~~-~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~  163 (277)
                      ...    +..+++  .+.|||++||+|.+ ++|+++|||||||||+|+++|.+|+|++++||||||||||+|||.+++|+
T Consensus       169 ~~~~~~~~~~~~~--~~~v~vv~Gfig~~~~~G~~ttLGRgGSD~TAa~la~~l~A~~~~iwtDV~Gi~taDPr~v~~a~  246 (304)
T d2cdqa1         169 PAVAKRLYDDWMH--DPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRAT  246 (304)
T ss_dssp             HHHHHHHHHHHHH--SCCEEEEESSEEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTTCTTCC
T ss_pred             hhhHHHHhhhhhc--cCcEEEeeccccccCcCCceeeeccCccccHHHHHHHHhCchHHHHhcCcchheeccccccCCce
Confidence            433    334455  67899999999997 78999999999999999999999999999999999999999999999999


Q ss_pred             EEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCC
Q 023778          164 ILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPP  218 (277)
Q Consensus       164 ~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~  218 (277)
                      +|++|||+||.||+++|++++||+|+.|+++++||++|+|+++|+.+||+|+++.
T Consensus       247 ~i~~lsy~EA~ela~~GakvlHp~ti~p~~~~~Ipi~i~nt~~p~~~GT~I~~~~  301 (304)
T d2cdqa1         247 PVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTIITKTR  301 (304)
T ss_dssp             BCCEEEHHHHHHHHHHHSSCCCHHHHHHHHHHTCCEEEEETTSTTSCCEEEESCC
T ss_pred             EcCccCHHHHHHHHhCCCcccCHHHHHHHHHCCCcEEEecCCCCCCCCCEEeCCC
Confidence            9999999999999999999999999999999999999999999999999998653

>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1e-51  Score=374.69  Aligned_cols=204  Identities=32%  Similarity=0.582  Sum_probs=179.9

Q ss_pred             HHHHHHHHHHHhhhc---CCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHH
Q 023778           14 EFIRSTYNFLSNVDS---GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEK   90 (277)
Q Consensus        14 ~~i~~~~~~L~~~~~---~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~   90 (277)
                      +.++..++.|+.+++   .+++++.+|.++|+||+||+++++.+|+++|+++.++|++++++ +++.+++..++...+.+
T Consensus        84 ~~l~~~~~~l~~l~~~~~~~~s~~~~d~Ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~i~-t~~~~~~a~~~~~~~~~  162 (292)
T d2j0wa1          84 EEIERLLENITVLAEAAALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMR-TNDRFGRAEPDIAALAE  162 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGTCB-BCSCTTSCCBCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcccChHHHHHHHhhhHHHhHHHHHHHHHhcCCCccccchhheee-cCCccccccchhhhhhh
Confidence            445666666655543   57889999999999999999999999999999999999999965 55667777888766554


Q ss_pred             HHHHHh-hcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeC
Q 023778           91 RLEKWF-SQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS  169 (277)
Q Consensus        91 ~i~~~l-~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is  169 (277)
                      .....+ ......|||++||+|.+.+|+++|||||||||+|+++|.+|+|++++||||||||||+|||.+++|++|++||
T Consensus       163 ~~~~~~~~~~~~~i~Vv~GFig~~~~G~~ttLGRgGSDytAa~~a~~l~A~~v~iwtDV~Gi~taDP~~v~~A~~i~~ls  242 (292)
T d2j0wa1         163 LAALQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIA  242 (292)
T ss_dssp             HHHHHTHHHHHHSEEEEESSEEECTTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEEE
T ss_pred             hhhhhhhhhhcccccccccccccccCCceEeeccCcccHHHHHHHHHhhcHHHHHhccCcceeechhhcCCCceEcceeC
Confidence            443322 2112359999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCC
Q 023778          170 YQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPP  218 (277)
Q Consensus       170 ~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~  218 (277)
                      |+||.||+++|++|+||+|+.|+++++||++|+|+++|+.+||+|+++.
T Consensus       243 y~EA~ela~~GakVlhp~ti~p~~~~~Ipi~i~nt~~p~~~GT~I~~~~  291 (292)
T d2j0wa1         243 FAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNKT  291 (292)
T ss_dssp             HHHHHHHHHTTCTTSCTTTHHHHHHHTCCEEEEESSCTTSCCEEEESCC
T ss_pred             HHHHHHHHhCCccccCHHHHHHHHHcCCcEEEeeCCCCCCCCCeEecCC
Confidence            9999999999999999999999999999999999999999999998753

>d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=4.2e-51  Score=372.20  Aligned_cols=202  Identities=37%  Similarity=0.553  Sum_probs=191.0

Q ss_pred             HHHHHHHHHHHhhhc-----CCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHH
Q 023778           14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES   88 (277)
Q Consensus        14 ~~i~~~~~~L~~~~~-----~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~   88 (277)
                      +++++.+++|+++|+     ++++++.+|.++|+||+||+.+++.+|+++|+++.+++++++++.+++.+++..++...+
T Consensus        94 ~~i~~~l~~L~~~l~~~~~~~e~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~  173 (302)
T d2hmfa1          94 KIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEV  173 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEECTTTTTEEECSCTTSCCEEEECH
T ss_pred             HHHHHHHHHHHHHHHHhhhcccCCHHHHHHHhhhhhhHHhHHHHHHHHHcCCceEEeeccccccccCCccchhhhhhhhh
Confidence            457778888888886     488999999999999999999999999999999999999999888888888877777778


Q ss_pred             HHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeee
Q 023778           89 EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL  168 (277)
Q Consensus        89 ~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~i  168 (277)
                      .+++.+++.  .+.|||++||+|.+.+|+++|||||||||+|+++|.+|+|+++++||||+|||++||+.+|+|++++++
T Consensus       174 ~~~l~~~~~--~~~v~Vv~GFig~~~~G~~ttLgRgGSD~tA~~la~~l~A~~~~i~tdv~gi~~~dP~~~~~a~~~~~~  251 (302)
T d2hmfa1         174 KERLLPLLK--EGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKL  251 (302)
T ss_dssp             HHHHHHHHH--TTCEEEEESSEEECTTCCEEECCTTTHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEE
T ss_pred             HHHHHHHHh--cCCeEEeecccccCCCCCEEEEeccCcccHHHHHHHHhccHHHHHHhccchhccchhhcCCCceEeccc
Confidence            888998887  789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCC
Q 023778          169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRP  217 (277)
Q Consensus       169 s~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~  217 (277)
                      +|+||.||+++|+++|||+|+.+|+++|||++|+|+++|+.+||+|+++
T Consensus       252 ~y~ea~eLa~~g~~v~h~~~~~~~~~~~i~i~v~~~~~~~~~gT~i~~~  300 (302)
T d2hmfa1         252 SYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITND  300 (302)
T ss_dssp             EHHHHHHHHHTTCTTSCGGGHHHHHHTTCCEEEEETTSTTSCCEEEESC
T ss_pred             CHHHHHHHHhCCCcccCHHHHHHHHHcCCCEEEeeCCCCCCCCCEEcCC
Confidence            9999999999999999999999999999999999999999999999875

>d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.89  E-value=2.6e-23  Score=180.06  Aligned_cols=151  Identities=25%  Similarity=0.299  Sum_probs=121.7

Q ss_pred             CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcc
Q 023778           31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (277)
Q Consensus        31 ~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i  110 (277)
                      .++...+.+...++++++.++.+.|.+.|++..          .        .++    ....+++.  .+.|||+.+..
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~--------~~~----~~~~~~l~--~~~ipv~~~~~  115 (225)
T d2brxa1          60 SSETFKDFIGIQITRANAMLLIAALREKAYPVV----------V--------EDF----WEAWKAVQ--LKKIPVMGGTH  115 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSC----------B--------CSH----HHHHHHHH--TTCBCEECCCS
T ss_pred             hhhHHHHHhhhhHHHHHHHHHHHHHHhhhcccc----------c--------ccH----HHHHHHHH--hcccccccCCC
Confidence            456677888888999999999999998887731          1        122    23345565  67899986632


Q ss_pred             ccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcC------Ccc
Q 023778          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGA------NVL  184 (277)
Q Consensus       111 ~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~------~v~  184 (277)
                      +    +       +.+|++|+++|..|+|++++||||||||||+||+++|+|++|++++++|+.+++..|.      .++
T Consensus       116 ~----~-------~~~D~lAa~lA~~l~Ad~lii~TDVdGVyt~dP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~g~gg~~  184 (225)
T d2brxa1         116 P----G-------HTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVI  184 (225)
T ss_dssp             T----T-------CCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------CCS
T ss_pred             C----C-------cchhHHHHHHHHHhCchhhhhhhhhhhhhhcccccccccccceEEecchHHHHhccCccccCCCCcc
Confidence            1    1       2359999999999999999999999999999999999999999999999999987553      366


Q ss_pred             hHHHHHHHHhCCCcEEEEeccCC---------CCCeeEEeC
Q 023778          185 HPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMICR  216 (277)
Q Consensus       185 ~p~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~~  216 (277)
                      ++.|++.|.++|+|++|+|+++|         +..||+|.|
T Consensus       185 ~k~Aa~~a~~~gi~v~I~ng~~~~~l~~~l~ge~~GT~i~P  225 (225)
T d2brxa1         185 DPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP  225 (225)
T ss_dssp             CHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEECC
T ss_pred             cHHHHHHHHHCCCcEEEEeCCCcchHHHHHCCCCCCcEecC
Confidence            77789999999999999999865         568999965

>d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Glutamate 5-kinase
species: Campylobacter jejuni [TaxId: 197]

Probab=99.88  E-value=1.7e-22  Score=177.29  Aligned_cols=167  Identities=13%  Similarity=0.156  Sum_probs=126.5

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCC
Q 023778           35 FTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTP  114 (277)
Q Consensus        35 ~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~  114 (277)
                      ..+.+.+.|+..+..++...|..+|+.+...-....      .+.. ...+....+.+..+++  .+.+||+.+.    .
T Consensus        63 ~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~l~~~~------~~~~-~~~~~~~~~~~~~~l~--~~~ipv~~~~----~  129 (250)
T d2akoa1          63 NKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGK------DFDS-RKATKHAKNAIDMMIN--LGILPIINEN----D  129 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEECTG------GGGC-HHHHHHHHHHHHHHHH--TTCEEEEEEC----T
T ss_pred             hhhhhhcccchhHHHHHHHHhhhccccccccccccc------chhh-hhhhhhhhHHHHHHHH--hCcccccccC----c
Confidence            345677889999999999999999998765422111      1100 1112233466778887  8899998663    3


Q ss_pred             CCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCH--HHHHHHHh-----hcCCcchHH
Q 023778          115 DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSY-----FGANVLHPR  187 (277)
Q Consensus       115 ~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~--~e~~~l~~-----~g~~v~~p~  187 (277)
                      .+.+....++++|++|+++|..++|++++++||||||||+||+++|+|++|+++++  ++..++..     .|..+|.++
T Consensus       130 ~~~~~~~~~~~~D~~A~~lA~~~~a~~li~~tdVdGVyd~dP~~~~~Ak~i~~It~~~~~~~~~~~~~~s~~~tGGM~~K  209 (250)
T d2akoa1         130 ATAIEEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTK  209 (250)
T ss_dssp             TTCCHHHHBTTTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHH
T ss_pred             cccccccccccchhhHHHHHHhcccceeeeccCCCceeeCCCcccccccchhhccccchHHhhhhcccCCCCCCCchHHH
Confidence            35556677889999999999999999999999999999999999999999999998  44444432     346789884


Q ss_pred             --HHHHHHhCCCcEEEEeccCCC-----------CCeeEE
Q 023778          188 --TIIPVMRYDIPIVIRNIFNLS-----------VPGIMI  214 (277)
Q Consensus       188 --a~~~a~~~~i~v~I~n~~~~~-----------~~GT~I  214 (277)
                        |+..|.++|+|++|.|+++|+           ..||+|
T Consensus       210 l~aa~~~~~~gi~v~I~nG~~~~~l~~~l~~~~~~~GTv~  249 (250)
T d2akoa1         210 LKAAKFLLEHNKKMFLASGFDLSVAKTFLLEDKQIGGTLF  249 (250)
T ss_dssp             HHHHHHHHHTTCEEEEEESSSCHHHHHHHHSCCCCSSEEE
T ss_pred             HHHHHHHHHCCCCEEEecCCCccHHHHHHhCCCCCCceEe
Confidence              788999999999999998762           358887

>d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Haemophilus influenzae [TaxId: 727]

Probab=99.87  E-value=2.9e-21  Score=167.14  Aligned_cols=180  Identities=17%  Similarity=0.147  Sum_probs=124.4

Q ss_pred             ccHHHHHHHHHHHHhhhcC----------------------CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccc
Q 023778           11 LSYEFIRSTYNFLSNVDSG----------------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (277)
Q Consensus        11 ~~~~~i~~~~~~L~~~~~~----------------------~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~   68 (277)
                      ++.++|+...+++.++.+.                      ..+....+..........+.++...+.............
T Consensus        25 i~~~~i~~la~~I~~l~~~g~~vivVssg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (236)
T d2a1fa1          25 IDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAF  104 (236)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCHHHHHHHHHHHHHHHHCCCeEEEEecccccchhhhhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhh
Confidence            5778888888888776641                      122333444445555666667777777777766554432


Q ss_pred             cceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeecc
Q 023778           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV  148 (277)
Q Consensus        69 ~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV  148 (277)
                      ...  .        .........+....+  .+.++++.+.         ..+.+|++|.+|+++|.+++|+.++++|||
T Consensus       105 ~~~--~--------~~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~~dnD~laa~vA~~~~Ad~lii~TDV  163 (236)
T d2a1fa1         105 QLN--G--------ICDTYNWSEAIKMLR--EKRVVIFSAG---------TGNPFFTTDSTACLRGIEIEADVVLKATKV  163 (236)
T ss_dssp             CCT--T--------TSEECCHHHHHHHHH--TTCEEEEEST---------TSCSSCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred             hhh--h--------hHHHhhhhhhhhhhh--hccccccccc---------ccCCCCCCcHHHHHHHHHhchhHHHHhhcc
Confidence            221  0        001112244555555  5666665432         123457789999999999999999999999


Q ss_pred             ccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCC---------CCCeeEE
Q 023778          149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMI  214 (277)
Q Consensus       149 ~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I  214 (277)
                      |||||+||+++|+|+++++++++|+.+.   |+++++++|++.|+++|||++|+|+++|         +.+||+|
T Consensus       164 dGvyt~dP~~~~~A~~i~~i~~~e~l~~---G~~v~k~~Aa~~a~~~gi~v~I~ng~~~~~l~~~l~Ge~~GTlI  235 (236)
T d2a1fa1         164 DGVYDCDPAKNPDAKLYKNLSYAEVIDK---ELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTI  235 (236)
T ss_dssp             SSCBCC-------CCBCSEECHHHHHHT---TCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEE
T ss_pred             cccccccccccccccccccccHHHHHhc---CCceeHHHHHHHHHHCCCeEEEEeCCCCcHHHHHHcCCCCccee
Confidence            9999999999999999999999998774   8999999999999999999999999987         4679998

>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.86  E-value=6.3e-21  Score=164.05  Aligned_cols=113  Identities=24%  Similarity=0.229  Sum_probs=94.3

Q ss_pred             HHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeC
Q 023778           90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS  169 (277)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is  169 (277)
                      ...+++++  .+.+||..|++.           ++.+|++|+++|..++|+.++++||||||||+||+++|+|++|++++
T Consensus        93 ~~~~~l~~--~~~v~v~~~~~~-----------~~stD~laa~vA~~l~Ad~liilTDVDGvYt~dP~~~~~A~~i~~is  159 (219)
T d2ij9a1          93 MEAEELSK--LYRVVVMGGTFP-----------GHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLS  159 (219)
T ss_dssp             HHHHHHHT--TCSEEEECCCSS-----------SSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEEC
T ss_pred             HHHHHHhc--cCCceEECCCCC-----------CCcccHHHHHHHHHcCchHhhhccCcccccccccccCcccccccccC
Confidence            45566665  678898877532           12359999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc------CCcchHHHHHHHHhCCCcEEEEecc--------CCCCCeeEEe
Q 023778          170 YQEAWEMSYFG------ANVLHPRTIIPVMRYDIPIVIRNIF--------NLSVPGIMIC  215 (277)
Q Consensus       170 ~~e~~~l~~~g------~~v~~p~a~~~a~~~~i~v~I~n~~--------~~~~~GT~I~  215 (277)
                      |+|+.+++..+      ..++++.|++.|.++|+|++|.|+.        +.+..||+|+
T Consensus       160 ~~e~~~~~~~~~~~~~gg~~~k~~Aa~~a~~~gi~~~I~~g~~~ni~~~l~Ge~vGT~Is  219 (219)
T d2ij9a1         160 PQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVILGTPENIMKAVKGEAVGTVIA  219 (219)
T ss_dssp             HHHHHHHTCC-----CCCCCSCHHHHHHHHHHTCCEEEEECCHHHHHHHHTTCCCSEEEC
T ss_pred             HHHHHHHhhccCccCCCCCcchHHHHHHHHHcCCcEEEecCCCcHHHHHHCCCCCceEeC
Confidence            99999986432      2378999999999999999999985        2356899984

>d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Neisseria meningitidis [TaxId: 487]

Probab=99.84  E-value=7.4e-20  Score=157.61  Aligned_cols=181  Identities=19%  Similarity=0.207  Sum_probs=135.5

Q ss_pred             ccHHHHHHHHHHHHhhhcC----------------------CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccc
Q 023778           11 LSYEFIRSTYNFLSNVDSG----------------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (277)
Q Consensus        11 ~~~~~i~~~~~~L~~~~~~----------------------~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~   68 (277)
                      ++.++|+.+.+++.++.+.                      ..+........+....+....+...+...+.........
T Consensus        24 i~~~~i~~la~~I~~l~~~g~~vviVssG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (236)
T d1ybda1          24 INHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRATADYMGMMATVMNALALKDAFETLGIKARVQSAL  103 (236)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCHHHHHHHHHHHHHHHHCCCEEEEEeccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            6788888888888776541                      123334444555566667777778888888887776543


Q ss_pred             cceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeecc
Q 023778           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV  148 (277)
Q Consensus        69 ~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV  148 (277)
                      .....          ........+...++  .+.++++...         ....+|++|.+|+++|..++|+.++++|||
T Consensus       104 ~~~~~----------~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~gdnD~laa~vA~~~~ad~liilTdV  162 (236)
T d1ybda1         104 SMQQI----------AETYARPKAIQYLE--EGKVVIFAAG---------TGNPFFTTDTAAALRGAEMNCDVMLKATNV  162 (236)
T ss_dssp             CBSSS----------CEECCHHHHHHHHH--TTCEEEEEST---------TSSTTCCHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             hhhhh----------hhhHHHHHHHhhhc--cCceeccccc---------cccccccchHHHHHHHHHhCccceeeccCc
Confidence            32211          11112344555555  5566665321         123467889999999999999999999999


Q ss_pred             ccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCC---------CCCeeEEe
Q 023778          149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC  215 (277)
Q Consensus       149 ~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~  215 (277)
                      |||||+||+++++|++++.++++|+.+.   |.++|+++|++.|+++|||++|+|+++|         +..||+|.
T Consensus       163 dGvy~~dP~~~~~a~~~~~~~~~e~~~~---g~~~m~~~Aa~~a~~~gi~v~I~ng~~~~~i~~~l~Ge~vGTlIh  235 (236)
T d1ybda1         163 DGVYTADPKKDPSATRYETITFDEALLK---NLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH  235 (236)
T ss_dssp             SSCBSSCGGGCTTCCBCSEEEHHHHHHT---TCCSSCHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEE
T ss_pred             cchhhccccccccceeeccccHHHHHhc---CchHHHHHHHHHHHHCCCcEEEEeCCCccHHHHHHcCCCCCcEeC
Confidence            9999999999999999999999988654   8899999999999999999999999987         56899984

>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.73  E-value=1e-16  Score=136.92  Aligned_cols=184  Identities=16%  Similarity=0.166  Sum_probs=131.5

Q ss_pred             ccHHHHHHHHHHHHhhhcC----------------------CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccc
Q 023778           11 LSYEFIRSTYNFLSNVDSG----------------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (277)
Q Consensus        11 ~~~~~i~~~~~~L~~~~~~----------------------~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~   68 (277)
                      ++.++|++..++|+++.+.                      ...........+.+......++...+...|+........
T Consensus        24 l~~~~l~~ia~~I~~l~~~g~~Vv~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  103 (238)
T d1z9da1          24 IDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAI  103 (238)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             cCHHHHHHHHHHHHHHHHCCCEEEEEecccccccceeccccCCcchhHHHHHHHHHHHHHHHHHHHHhhCCccchhhhhh
Confidence            6788898888888776541                      233334445556667777788888899999988776544


Q ss_pred             cceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeecc
Q 023778           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV  148 (277)
Q Consensus        69 ~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV  148 (277)
                      ......      ....   ....+....   ...++.....   +     .....++.|..++++|..++|+.++++|||
T Consensus       104 ~~~~~~------~~~~---~~~~i~~~~---~~~~~~~~~~---~-----~~~~~~~~d~~~~~~a~~~~a~~li~~tdV  163 (238)
T d1z9da1         104 PMQNVA------EPYI---RGRALRHLE---KNRIVVFGAG---I-----GSPYFSTDTTAALRAAEIEADAILMAKNGV  163 (238)
T ss_dssp             CBTTTB------EECC---HHHHHHHHH---TTCEEEEEST---T-----SCTTCCHHHHHHHHHHHTTCSEEEEEESSC
T ss_pred             hhHHHH------hhhh---HHHHHhhhc---cccccceecc---e-----eccCCCCchHHHHHHHHHhhhhhhcccccc
Confidence            321100      0011   112333222   2223332221   1     111234568899999999999999999999


Q ss_pred             ccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCC---------CCCeeEEeCC
Q 023778          149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMICRP  217 (277)
Q Consensus       149 ~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~~~  217 (277)
                      ||+|++||+.+++|++++.+++.|...   .|..+|++.|++.+.++|||++|.|+++|         +.+||+|+.+
T Consensus       164 dGvy~~~P~~~~~a~~~~~~~~~~~~~---~g~~~~k~~Aa~~a~~~gi~v~I~nG~~p~~i~~~l~Ge~~GTlIt~~  238 (238)
T d1z9da1         164 DGVYNADPKKDANAVKFDELTHGEVIK---RGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNK  238 (238)
T ss_dssp             CSCBSSCTTTCTTCCBCSEEEHHHHHT---TTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred             cceecccccccccchhhccccccchhc---cCcchhHHHHHHHHHHCCCcEEEEeCCCcchHHHHHCCCCCceEeccC
Confidence            999999999999999999999998754   48899999999999999999999999987         5689999763

>d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.65  E-value=1.5e-15  Score=136.25  Aligned_cols=157  Identities=13%  Similarity=0.190  Sum_probs=124.7

Q ss_pred             cHHHHHHHHHHHHHHCCCCeEEEccccceeecCCC-----------------CCC----cCCCchHHHHHHHHHhhcCCC
Q 023778           43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTS-----------------SNQ----VDPDFSESEKRLEKWFSQSPS  101 (277)
Q Consensus        43 Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~-----------------~g~----~~~~~~~~~~~i~~~l~~~~~  101 (277)
                      |+.  ...+++.|.+.|+++.++++.+...+...+                 ++.    ..++    .+.++.+++  .+
T Consensus       105 g~v--n~~lv~~l~~~g~~a~~l~~~d~~~i~~~~~~~~~~~~~~~~~~~id~g~~G~v~~v~----~~~i~~ll~--~g  176 (300)
T d2bufa1         105 GQV--NKDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVN----VGLLNMLVK--GD  176 (300)
T ss_dssp             HTH--HHHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEEC----HHHHHHHHH--TT
T ss_pred             hHH--HHHHHHHHHhcCCcccccCCCccceEEeecccccccCcccccccccccCcccceeecc----hhHHHHHhc--CC
Confidence            454  567888999999999999887754332111                 111    1133    377888888  89


Q ss_pred             ceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcC
Q 023778          102 NTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGA  181 (277)
Q Consensus       102 ~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~  181 (277)
                      .|||+++ ++.+.+|+..++   ++|.+|+.+|.+|+|++++|+|||||||+.+      .+++++++.+|+.++...|.
T Consensus       177 ~Ipvis~-~~~~~~G~~~ni---n~D~~Aa~lA~~L~AdkLI~Ltdv~Gv~~~~------g~~~~~l~~~~~~~li~~~~  246 (300)
T d2bufa1         177 FIPVIAP-IGVGSNGESYNI---NADLVAGKVAEALKAEKLMLLTNIAGLMDKQ------GQVLTGLSTEQVNELIADGT  246 (300)
T ss_dssp             CEEEEEE-EEECTTSCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSCCBCTT------SCBCCEECHHHHHHHHHTTC
T ss_pred             CeEEecc-cccCcccchhcc---cHHHHHHHHHHHcCCCeEEEEcCCCccccCC------CcchhhccHHHHHHHHHcCC
Confidence            9999998 488999999887   4899999999999999999999999999654      45789999999999987663


Q ss_pred             --CcchHH--HHHHHHhCCCc-EEEEeccCC----------CCCeeEEeCC
Q 023778          182 --NVLHPR--TIIPVMRYDIP-IVIRNIFNL----------SVPGIMICRP  217 (277)
Q Consensus       182 --~v~~p~--a~~~a~~~~i~-v~I~n~~~~----------~~~GT~I~~~  217 (277)
                        .+|.|+  ++..|.++|++ ++|.|+..|          +..||.|+++
T Consensus       247 i~gGM~~Kl~aa~~a~~~Gv~rv~Ii~g~~~~~ll~eLft~~g~GT~I~~~  297 (300)
T d2bufa1         247 IYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR  297 (300)
T ss_dssp             SCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECC
T ss_pred             cCchHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHcCCCCceeEEecC
Confidence              689885  67778999997 999998655          4589999875

>d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.64  E-value=3.9e-15  Score=132.16  Aligned_cols=165  Identities=17%  Similarity=0.106  Sum_probs=127.4

Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeec------CCCCC---C-cCCCchHHHHHHHHHhhcCCCceEE
Q 023778           36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVN------PTSSN---Q-VDPDFSESEKRLEKWFSQSPSNTII  105 (277)
Q Consensus        36 ~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~------~~~~g---~-~~~~~~~~~~~i~~~l~~~~~~VpV  105 (277)
                      .+.+......+....+...|.+.|+++..+++.+.....      ...++   . ..+|.    +.++.+++  .+.|||
T Consensus        91 ~~~~~~~~~~~~n~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~d~~~~g~~~~v~~----~~i~~lL~--~~~ipv  164 (282)
T d2btya1          91 MEIVEMVLVGKINKEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNP----EILHALIE--NDYIPV  164 (282)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEECT----HHHHHHHH--TTCEEE
T ss_pred             HHHHHHHHhchhhHHHHHHHHhcCCCeeeeeccccceeEeccccccccccccccccccCh----HHHHHHHh--CCCcee
Confidence            333333333345778889999999999999887653321      11121   1 23443    78899998  899999


Q ss_pred             ecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc--CCc
Q 023778          106 ATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANV  183 (277)
Q Consensus       106 v~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v  183 (277)
                      ++++ +.+.+|++.++   ++|.+|+.+|.+++|++++|+|||+|+|+       +.+++++++..|+.++...+  .++
T Consensus       165 i~~~-~~~~~g~~~nl---~~d~~aa~iA~~l~AdkLI~ltdv~Gl~~-------d~~~i~~~~~~~~~~~~~~~~~tgG  233 (282)
T d2btya1         165 IAPV-GIGEDGHSYNI---NADTAAAEIAKSLMAEKLILLTDVDGVLK-------DGKLISTLTPDEAEELIRDGTVTGG  233 (282)
T ss_dssp             EESE-EECSSSCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSSCEE-------TTEECCEECHHHHHHHHTTTCSCTT
T ss_pred             ecCc-ccCCcceeeec---cccchhHHHhhhcCCceeEEeccccceec-------CccccccCCHHHHHHHHHcCCcCch
Confidence            9996 78889998876   48999999999999999999999999995       35789999999999987654  467


Q ss_pred             chHH--HHHHHHhCCCc-EEEEeccCC----------CCCeeEEeCC
Q 023778          184 LHPR--TIIPVMRYDIP-IVIRNIFNL----------SVPGIMICRP  217 (277)
Q Consensus       184 ~~p~--a~~~a~~~~i~-v~I~n~~~~----------~~~GT~I~~~  217 (277)
                      |.++  ++..|.++|++ ++|.|+..|          +..||+|++.
T Consensus       234 M~~Kl~aA~~A~~~GV~~v~I~~g~~~~~ll~elft~~g~GT~I~~~  280 (282)
T d2btya1         234 MIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKEL  280 (282)
T ss_dssp             HHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCC
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhCCCCceEEEEeC
Confidence            8884  77888999998 999998655          4579999764

>d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.62  E-value=5.6e-15  Score=131.55  Aligned_cols=157  Identities=13%  Similarity=0.184  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHCCCCeEEEccccceeecC-----------CCCCC----cCCCchHHHHHHHHHhhcCCCceEEecCccc
Q 023778           47 SAQMLAAVVRKNGIDCKWMDTREVLIVNP-----------TSSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (277)
Q Consensus        47 s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~-----------~~~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~  111 (277)
                      ....+.+.+.+.|+.+..+..........           ..++.    ..++    .+.+..+++  .+.+||++++ +
T Consensus       106 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~G~v~~v~----~~~I~~ll~--~g~ipvi~~~-~  178 (291)
T d2ap9a1         106 VGRELVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVN----TAAMLDLVA--AGRIPVVSTL-A  178 (291)
T ss_dssp             HHHHHHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEEC----HHHHHHHHH--TTCEEEEESE-E
T ss_pred             HHHHHHHHHHhcCCccccchhhhcccccccccccccccccccceeecccccch----HHHHHHHHh--cCCCcccCcc-c
Confidence            45678888899999999987665433211           01111    1222    377888998  8999999996 8


Q ss_pred             cCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHH--HH
Q 023778          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR--TI  189 (277)
Q Consensus       112 ~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~--a~  189 (277)
                      .+.+|+..++   ++|.+|+.+|.+++|++++|+|||||||+.+|+.   .+.++.++..|+.++...+..+|.|+  ++
T Consensus       179 ~~~~g~~~n~---d~D~lAa~lA~~l~AdkLI~LTdv~Gv~~~~~~~---~~~~~~~~~~~~~~~~~~~~gGM~~Kl~aA  252 (291)
T d2ap9a1         179 PDADGVVHNI---NADTAAAAVAEALGAEKLLMLTDIDGLYTRWPDR---DSLVSEIDTGTLAQLLPTLELGMVPKVEAC  252 (291)
T ss_dssp             ECTTCCEEEE---CHHHHHHHHHHHTTCSEEEEEESSSSEETTTTCT---TCEESEEEHHHHHHHGGGSCTTTHHHHHHH
T ss_pred             cCCccccccc---cHHHHHHHHHHhcCCcEEEEeeccCccccccccc---ccccccCCHHHHHHHHhhhhCchHHHHHHH
Confidence            8888998775   5899999999999999999999999999988864   35778889999999987777899985  66


Q ss_pred             HHHHhCCCc-EEEEeccCC----------CCCeeEEeC
Q 023778          190 IPVMRYDIP-IVIRNIFNL----------SVPGIMICR  216 (277)
Q Consensus       190 ~~a~~~~i~-v~I~n~~~~----------~~~GT~I~~  216 (277)
                      ..|.++|+| ++|.|+..|          +..||+|..
T Consensus       253 ~~a~~~Gv~rv~Ii~g~~~~~ll~eLft~~g~GT~I~r  290 (291)
T d2ap9a1         253 LRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVR  290 (291)
T ss_dssp             HHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEEC
T ss_pred             HHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCceEEec
Confidence            778889998 999998654          458999864

>d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: Carbamate kinase
domain: Carbamate kinase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.41  E-value=1.4e-12  Score=116.88  Aligned_cols=120  Identities=17%  Similarity=0.209  Sum_probs=91.7

Q ss_pred             HHHHHHhhcCCCceEEecCcccc-------CCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCC
Q 023778           90 KRLEKWFSQSPSNTIIATGFIAS-------TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA  162 (277)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~i~~-------~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a  162 (277)
                      ..+..+++  .+.+|++.+....       +.+|+..+.   ++|..|+.+|.+++|+.++|+|||||||+.+|+  +++
T Consensus       176 ~~i~~~~~--~~~i~vl~~~~~~~v~~~~~~~~G~~~ni---naD~lAa~vA~~l~Ad~LIlLTdv~Gv~~~~~~--~~~  248 (313)
T d1e19a_         176 ETIKKLVE--RGVIVIASGGGGVPVILEDGEIKGVEAVI---DKDLAGEKLAEEVNADIFMILTDVNGAALYYGT--EKE  248 (313)
T ss_dssp             HHHHHHHH--TTCEEECSGGGCEEEEEETTEEEECCCCC---CHHHHHHHHHHHTTCSEEEEEESSSSCEETTTS--TTC
T ss_pred             cceeeccc--cchhhhhccCCCCCccccCCCcCceEEec---chhHHHHHHHHHHHHHHHHhccCCcceeccCCC--ccc
Confidence            66777787  7889988764211       124555543   589999999999999999999999999987765  678


Q ss_pred             eEEeeeCHHHHHHHHhhc---CCcchHH--HHHHHHhCCC-cEEEEeccCC-----CCCeeEEeC
Q 023778          163 VILRTLSYQEAWEMSYFG---ANVLHPR--TIIPVMRYDI-PIVIRNIFNL-----SVPGIMICR  216 (277)
Q Consensus       163 ~~i~~is~~e~~~l~~~g---~~v~~p~--a~~~a~~~~i-~v~I~n~~~~-----~~~GT~I~~  216 (277)
                      ++|++++.+|+.++...|   ..+|.||  ++..|.++|+ +++|.+..+.     +..||+|.|
T Consensus       249 ~~i~~l~~~e~~~li~~g~~~~GGM~~Kv~aA~~a~~~Gv~~v~I~~~~~i~~~l~g~~GT~i~P  313 (313)
T d1e19a_         249 QWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEGKTGTQVLP  313 (313)
T ss_dssp             EECCEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEGGGHHHHHTTSSSEEEEC
T ss_pred             ceeeeCCHHHHHHHhhCCCcccCChHHHHHHHHHHHHhCCCEEEECChHHHHHHHCCCCCCEEcC
Confidence            999999999999998644   4679996  6666677776 5888764321     136999976

>d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium [TaxId: 1352]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: Carbamate kinase
domain: Carbamate kinase
species: Enterococcus faecium [TaxId: 1352]

Probab=99.38  E-value=7.5e-13  Score=117.92  Aligned_cols=118  Identities=16%  Similarity=0.216  Sum_probs=90.5

Q ss_pred             HHHHHHhhcCCCceEEecCc-----cccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeE
Q 023778           90 KRLEKWFSQSPSNTIIATGF-----IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI  164 (277)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~-----i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~  164 (277)
                      ..+...++  .+.+|+..+-     .+.+.+|+..+.   ++|.+|+.+|.+++|++++|+|||||||+.+|+  ++.++
T Consensus       172 ~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~g~~~ni---naD~lAa~iA~~l~Ad~Li~lTdv~Gv~~~~~~--~~~~~  244 (307)
T d1b7ba_         172 ETINTLIK--NDIITISCGGGGIPVVGQELKGVEAVI---DKDFASEKLAELVDADALVILTGVDYVCINYGK--PDEKQ  244 (307)
T ss_dssp             HHHHHHHH--TTEEEECSGGGCEEEETTTTEECSCCC---CHHHHHHHHHHHHTCSEEEEECSSSSCEETTTS--TTCEE
T ss_pred             hhhhhhhh--cCceeeccCCccccccccCCCCcEEec---chhHHHHHHHHHhhhhheeeccccCceeeCCCc--ccccc
Confidence            55666665  6777776442     134456676654   589999999999999999999999999998875  67789


Q ss_pred             EeeeCHHHHHHHHhhc---CCcchHH--HHHHHHhCCCc-EEEEec-------cCCCCCeeEE
Q 023778          165 LRTLSYQEAWEMSYFG---ANVLHPR--TIIPVMRYDIP-IVIRNI-------FNLSVPGIMI  214 (277)
Q Consensus       165 i~~is~~e~~~l~~~g---~~v~~p~--a~~~a~~~~i~-v~I~n~-------~~~~~~GT~I  214 (277)
                      +++++.+|+.++...|   .++|.||  |+..|.++|++ ++|.+.       +..+..||.|
T Consensus       245 i~~l~~~e~~~l~~~g~~~~GGM~pKl~aA~~al~~Gv~~~~ii~~~~~l~~l~~~~~~GT~I  307 (307)
T d1b7ba_         245 LTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITSLENLGSMSGDEIVGTVV  307 (307)
T ss_dssp             CSEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHTTSTTCEEEEECHHHHTTCSSCSCEEECC
T ss_pred             cccCCHHHHHHHHHCCCcccCChHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHcCCCCCCCC
Confidence            9999999999998754   4679996  78888999996 666544       2234568865

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=99.09  E-value=5.2e-11  Score=89.51  Aligned_cols=49  Identities=55%  Similarity=0.774  Sum_probs=47.4

Q ss_pred             cCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          229 DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       229 ~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      ++.+++|++.+|+++|+++|.+|.+.||+++|+|++|+++||||+||+|
T Consensus         3 ~~~vk~I~~~~nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ   51 (100)
T d2hmfa3           3 DSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQ   51 (100)
T ss_dssp             SSSCCEEEEEEEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCceeEEEecCCEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeec
Confidence            4689999999999999999999999999999999999999999999997

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.02  E-value=1.2e-10  Score=86.08  Aligned_cols=48  Identities=19%  Similarity=0.375  Sum_probs=46.2

Q ss_pred             CCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       230 ~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      ..+++|++++|+++|+++|.+|.+.||+++++|++|+++||||+||+|
T Consensus         2 ~~v~~I~~~~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~   49 (91)
T d2cdqa2           2 SILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT   49 (91)
T ss_dssp             CCEEEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CceEEEEEeCCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEEe
Confidence            368999999999999999999999999999999999999999999986

>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=2.1e-10  Score=84.63  Aligned_cols=48  Identities=19%  Similarity=0.270  Sum_probs=46.5

Q ss_pred             CCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       230 ~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +.+++|++++|+++|+|+|.+|.+.||+++|+|++|+++||||+||+|
T Consensus         3 p~vk~I~~~~~~~~i~v~g~~m~~~~G~~~~if~~L~~~~Inv~mis~   50 (91)
T d2j0wa2           3 PLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITT   50 (91)
T ss_dssp             CSEEEEEEEEEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEE
T ss_pred             CcceEEEEeCCEEEEEEEeCCCCCCcCHHHHHHHHHHHcCCcEEEEEc
Confidence            579999999999999999999999999999999999999999999986

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=98.75  E-value=3e-09  Score=73.87  Aligned_cols=37  Identities=46%  Similarity=0.766  Sum_probs=35.9

Q ss_pred             eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +++|+++|.||.++||+++|+|++|+++||||.||+|
T Consensus         1 Va~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq   37 (67)
T d2hmfa2           1 VCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQ   37 (67)
T ss_dssp             EEEEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEE
T ss_pred             CEEEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeee
Confidence            5899999999999999999999999999999999997

>d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=2.2e-07  Score=78.45  Aligned_cols=151  Identities=14%  Similarity=0.067  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHCCCCeEEEccccceeecCCC----CC---C-cCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCce
Q 023778           48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTS----SN---Q-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPT  119 (277)
Q Consensus        48 ~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~----~g---~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~  119 (277)
                      ...+...+...|.++...............    +.   . ..++.    ..+...++  .+.+|++.++ +.+.++...
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~--~~~i~v~~~~-~~~~~~~~~  157 (258)
T d1gs5a_          85 NKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSP----KLINSLLE--NGYLPVVSSI-GVTDEGQLM  157 (258)
T ss_dssp             HHHHHHHHHHTTCCEEEECTTGGGCEEEEECCGGGBSBEEEEECCC----HHHHHHHH--TTCEEEECSE-EECTTSCEE
T ss_pred             HHHHHHHHhccCcccccccccccccccccccccccccccccccccc----chHHHHHh--cccccccccc-ccccCCcEE
Confidence            566778888999999888766542221100    10   1 12333    56677777  7899999986 667777776


Q ss_pred             eccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhh--cCCcchHH--HHHHHHhC
Q 023778          120 TLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF--GANVLHPR--TIIPVMRY  195 (277)
Q Consensus       120 ~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~--g~~v~~p~--a~~~a~~~  195 (277)
                      ++   ++|..++.+|..++|+. ++++|++|+|..++.      ..+.++..+.......  +.++|-|+  ++..|.++
T Consensus       158 ~~---~~~~~a~~~a~~l~a~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aA~~a~~~  227 (258)
T d1gs5a_         158 NV---NADQAATALAATLGADL-ILLSDVSGILDGKGQ------RIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAART  227 (258)
T ss_dssp             EC---CHHHHHHHHHHHHTCEE-EEEESSSSCBCTTSC------BCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHH
T ss_pred             Ee---chhhhhhhHHHHHHhhh-hhhcccccccccccc------cccccchHHHHHHHhCCcccchHHHHHHHHHHHHHc
Confidence            65   47999999999999986 577899999976654      3455566666655443  45789885  67888999


Q ss_pred             CCc-EEEEeccCC---------CCCeeEEe
Q 023778          196 DIP-IVIRNIFNL---------SVPGIMIC  215 (277)
Q Consensus       196 ~i~-v~I~n~~~~---------~~~GT~I~  215 (277)
                      |++ ++|.|+..|         +..||+|.
T Consensus       228 Gv~~v~I~~g~~~~~L~~l~~g~~~GT~i~  257 (258)
T d1gs5a_         228 LGRPVDIASWRHAEQLPALFNGMPMGTRIL  257 (258)
T ss_dssp             HTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred             CCCEEEEEeCCCchHHHHHhcCCCCceEEe
Confidence            996 999998654         45799984

>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.43  E-value=3.1e-08  Score=70.11  Aligned_cols=35  Identities=29%  Similarity=0.353  Sum_probs=33.9

Q ss_pred             eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      |+|+++| +|...||+++|+|++|+++||||.||+|
T Consensus         2 a~IsvVG-~~~~~~Giaarif~aL~~~~InV~mIsq   36 (75)
T d2cdqa3           2 AIISLIG-NVQHSSLILERAFHVLYTKGVNVQMISQ   36 (75)
T ss_dssp             EEEEEEE-CGGGHHHHHHHHHHHHHHHTCCCSEEEE
T ss_pred             cEEEEEC-CCCCChhHHHHHHHHHHHcCCceEEEEc
Confidence            7899999 8999999999999999999999999997

>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=2.8e-06  Score=57.82  Aligned_cols=35  Identities=29%  Similarity=0.520  Sum_probs=29.8

Q ss_pred             eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      +|+|+++|.||.+.||+++|+|++|++.+  |.|++|
T Consensus         1 la~IsvvG~gm~~~~gi~arif~~L~~~n--I~~i~~   35 (64)
T d2j0wa3           1 LALVALIGNDLSKACGVGKEVFGVLEPFN--IRMICY   35 (64)
T ss_dssp             EEEEEEEESSCTTSSSHHHHHHSSCTTSC--CCEEEE
T ss_pred             CeEEEEECCCcccCccHHHHHHHHHhhCC--CeEEEE
Confidence            58999999999999999999999997654  555554

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.86  E-value=0.037  Score=38.13  Aligned_cols=33  Identities=30%  Similarity=0.508  Sum_probs=29.6

Q ss_pred             eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      ++|++.|.   ++||+.+++.+.|+++|+||.=++|
T Consensus         3 ~vitv~g~---DrpGiVa~vt~~l~~~g~NI~d~~q   35 (83)
T d1zpva1           3 AIITVVGK---DKSGIVAGVSGKIAELGLNIDDISQ   35 (83)
T ss_dssp             EEEEEEES---CCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred             EEEEEEcC---CCCCHHHHHHHHHHHCCCeEEEEEe
Confidence            57899986   6999999999999999999987765

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=92.38  E-value=0.066  Score=37.11  Aligned_cols=35  Identities=26%  Similarity=0.410  Sum_probs=30.2

Q ss_pred             CeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778          240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (277)
Q Consensus       240 nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq  277 (277)
                      ...+|++.|.   ++||+++++.+.|+++|+||.=++|
T Consensus         4 ~~~vitv~G~---DrpGiva~vt~~l~~~g~NI~d~~~   38 (86)
T d1u8sa1           4 QHLVITAVGT---DRPGICNEVVRLVTQAGCNIIDSRI   38 (86)
T ss_dssp             EEEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred             cEEEEEEEeC---CCChHHHHHHHHHHHCCCeEEEeEe
Confidence            3457899996   6999999999999999999987664

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=91.80  E-value=0.089  Score=35.27  Aligned_cols=30  Identities=7%  Similarity=0.172  Sum_probs=26.0

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHhCCCcEEEEe
Q 023778          244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS  276 (277)
Q Consensus       244 Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~is  276 (277)
                      |+|.   +.++||.++++...|+++||||..++
T Consensus         6 isV~---~eNkpG~L~~v~~~~~~~~inI~sl~   35 (70)
T d2f06a2           6 LSIF---LENKSGRLTEVTEVLAKENINLSALC   35 (70)
T ss_dssp             EEEE---ECSSSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEE---EeCCCcHHHHHHHHHHHCCCCEEEEE
Confidence            5666   45799999999999999999999875

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=87.86  E-value=0.15  Score=34.01  Aligned_cols=25  Identities=20%  Similarity=0.421  Sum_probs=22.8

Q ss_pred             CCCchhHHHHHHHHHHhCCCcEEEE
Q 023778          251 MAGVPGTANAIFGAVKDVGANVIMI  275 (277)
Q Consensus       251 m~~~~gv~a~if~~L~~~~I~V~~i  275 (277)
                      +.++||-++++.+.|+++||||.-+
T Consensus         6 v~d~pG~L~~v~~~L~~~~InI~~~   30 (71)
T d2f06a1           6 CPNVPGALAKVLGFLSAEGVFIEYM   30 (71)
T ss_dssp             EESSTTHHHHHHHHHHHTTCCEEEE
T ss_pred             ecCCccHHHHHHHHHHHCCCCEEEE
Confidence            6689999999999999999999754

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.95  E-value=0.35  Score=32.70  Aligned_cols=24  Identities=21%  Similarity=0.270  Sum_probs=22.0

Q ss_pred             CCchhHHHHHHHHHHhCCCcEEEE
Q 023778          252 AGVPGTANAIFGAVKDVGANVIMI  275 (277)
Q Consensus       252 ~~~~gv~a~if~~L~~~~I~V~~i  275 (277)
                      .++||+++++-+.|+++||||..+
T Consensus        11 ~D~PGvi~~I~~~l~~~~iNI~~m   34 (78)
T d1ygya3          11 VDRPGALGKIGTLLGTAGVNIQAA   34 (78)
T ss_dssp             SCCTTHHHHHHHHHHHTTCCEEEE
T ss_pred             CCcCCHHHHHHHHHHhcCcChhhh
Confidence            479999999999999999999865

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=85.06  E-value=0.5  Score=32.81  Aligned_cols=30  Identities=17%  Similarity=0.102  Sum_probs=25.8

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHhCCCcEEEEe
Q 023778          244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS  276 (277)
Q Consensus       244 Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~is  276 (277)
                      |.|.|.   ++||+.+++.+.|+++|+||.-++
T Consensus         9 v~v~g~---DrpGIV~~it~~la~~~~nI~~l~   38 (93)
T d1u8sa2           9 VYVESD---DKLGLTEKFTQFFAQRQIGMASLS   38 (93)
T ss_dssp             EEEEES---CCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEC---CCCCHHHHHHHHHHHcCCCchhhh
Confidence            567776   699999999999999999997554

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=82.98  E-value=0.5  Score=32.22  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=21.8

Q ss_pred             CCchhHHHHHHHHHHhCCCcEEEE
Q 023778          252 AGVPGTANAIFGAVKDVGANVIMI  275 (277)
Q Consensus       252 ~~~~gv~a~if~~L~~~~I~V~~i  275 (277)
                      .+.||+++++.+.|+++||||.-+
T Consensus        19 ~d~PGvla~I~~~l~~~~iNI~~~   42 (84)
T d1sc6a3          19 ENRPGVLTALNKIFAEQGVNIAAQ   42 (84)
T ss_dssp             ESCTTHHHHHHHHHHHTTCEEEEE
T ss_pred             CCcCCHHHHHHHHHHHcCCCHHHh
Confidence            479999999999999999999754

>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Atu0741-like
domain: Hypothetical protein Atu0741
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=82.63  E-value=0.84  Score=29.90  Aligned_cols=34  Identities=12%  Similarity=0.236  Sum_probs=29.3

Q ss_pred             EEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEe
Q 023778          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS  276 (277)
Q Consensus       243 ~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~is  276 (277)
                      .+++.|..=.+..|+++++.+.|+++||++-.+|
T Consensus         4 ~l~v~g~l~l~~vGi~a~i~~~La~a~Is~~~vS   37 (66)
T d1zhva2           4 CFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVS   37 (66)
T ss_dssp             EEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEE
T ss_pred             EEEEccCCCchhHhHHHHHHHHHHHCCCCeEEEE
Confidence            4677777556889999999999999999998876