Citrus Sinensis ID: 023824

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEEEEEcccccEEEEEEEEEcccEEEEEEEEEEEccEEEEEEEEccccEEEEEEEEcccccccEEEEEEccccccccccccccccccEEEEEEEcccccEEEEEEEEccccEEEEEEEEEEcccccccEEEEEEEEEccccEEEEEEEccccEEEEEEEEEcccccEEEEEEEEEEEccccccEEEEEEEEEEccccEEEEEEcccccEEEEEEEEEcccEEEEEEEEEEccccccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHccccccccEEEEEEEccccEEEEEEEcccccEEEEEEEEEEccccEEEEEEEcccccEEEEEEEcccccccEEEEEEccccccccEEEEEEEcccEEEEEEEccccccEEEEEEEEccccEEEEEEEEEEcccccccEcEEEEEEccccEEEEEEEcccccEEEEEEEEEEcccccEEEEEEEEEEccccccEEEEEEEEEEccccEEEEEEccccEEEEEEEEEEcccEEEEEEEEEccccccccccEEEEEEEcc
Coil and Loop (DISEMBL)
mskgpglfADIGKKAKDLLtkdynadqkisistysgagvALTSTAVkkgglsagdvaaQYKYKNVLFDVkvdtesnilttftlteilpstkaiaslkvpdynsgklevqyfhdhatftsaialnqspcidvtatigtpsiafgaeagydttsgnftkytagisvtkpdscasiilgdkgdtIRASYVHHLDNLKKSAAVGEITRrfstnentftvggsYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISsevdtkalektprfgLAIALKP
Flexible Loop (DISEMBL)
mskgpglfaDIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTtftlteilpstkAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTagisvtkpdscASIILGDKGDTIRASYVHHLDNLKKSAAVGEITrrfstnentftvgGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTIssevdtkalektprfglaialkp
Low Complexity Region (SEG)
MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP
Disordered region (IsUnstruct)
**********I***AKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDT********FGL******
Disordered Region (DISOPRED)
***GPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP
Disordered Region (DISEMBL)
MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP
Disordered Region (DISPRO)
****PGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
Q9FJX3	276	Mitochondrial outer membr	yes	no	1.0	1.0	0.778	1e-127
Q84P97	277	Mitochondrial outer membr	yes	no	0.992	0.989	0.642	1e-101
P42054	276	Outer plastidial membrane	N/A	no	1.0	1.0	0.521	1e-77
P42055	276	Mitochondrial outer membr	N/A	no	1.0	1.0	0.521	5e-76
P42056	276	Mitochondrial outer membr	N/A	no	1.0	1.0	0.503	3e-75
Q9M2W6	226	Putative mitochondrial ou	no	no	0.818	1.0	0.547	1e-74
Q9SRH5	276	Mitochondrial outer membr	no	no	1.0	1.0	0.5	3e-73
Q6K548	274	Mitochondrial outer membr	no	no	0.985	0.992	0.487	1e-72
Q9SMX3	274	Mitochondrial outer membr	no	no	0.989	0.996	0.487	7e-71
Q10S27	276	Mitochondrial outer membr	no	no	1.0	1.0	0.478	3e-70

>sp|Q9FJX3|VDAC2_ARATH Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=VDAC2 PE=1 SV=1

 Score =  455 bits (1171), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/276 (77%), Positives = 247/276 (89%)

Query: 1   MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQY 60
           MSKGPGLF DIGKKAKDLLT+DYN+DQK SISTYS +GVALTSTA+KKGG+ A DVA QY
Sbjct: 1   MSKGPGLFTDIGKKAKDLLTRDYNSDQKFSISTYSASGVALTSTALKKGGVHAADVATQY 60

Query: 61  KYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSA 120
           KYKN LFDVK+DT+S++LTT TLTEILPSTKAIAS KVPDYNS KLEVQYFHDHAT T+A
Sbjct: 61  KYKNALFDVKIDTDSSVLTTVTLTEILPSTKAIASFKVPDYNSAKLEVQYFHDHATVTAA 120

Query: 121 IALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGD 180
            AL Q+P ID+TAT+G+P I+FGAEAGYDTTS  FTKY AGISVTKPD+C SIILGDKGD
Sbjct: 121 AALKQNPLIDITATLGSPVISFGAEAGYDTTSKTFTKYNAGISVTKPDACLSIILGDKGD 180

Query: 181 TIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGAL 240
           +++ASY+HH D  K++AAVGE+ R+FSTNENT TVGG YA+DH T VKAKLNNHG LGAL
Sbjct: 181 SLKASYLHHFDEFKRTAAVGEVYRKFSTNENTITVGGLYAIDHSTAVKAKLNNHGTLGAL 240

Query: 241 LQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
           LQHEV+P+SL+T+SSE+DTKALEK PRFGL++ALKP
Sbjct: 241 LQHEVLPRSLVTVSSEIDTKALEKHPRFGLSLALKP 276

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective (By similarity). Involved in plant growth and development at the vegetative and reproductive stages. Is important for leaf and pollen development and mitochondrial membrane potential steady state. May be involved in ABA-mediated early seedling development and disease resistance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q84P97|VDAC5_ORYSJ Mitochondrial outer membrane protein porin 5 OS=Oryza sativa subsp. japonica GN=VDAC5 PE=2 SV=1

 Score =  367 bits (942), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/274 (64%), Positives = 222/274 (81%)

Query: 3   KGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKY 62
           KGPGLF+DIGK+AKDLLTKDY  DQK+++ST S +GV LTSTAVKKGGL   DV++ YKY
Sbjct: 4   KGPGLFSDIGKRAKDLLTKDYTYDQKLTVSTVSSSGVGLTSTAVKKGGLYTLDVSSVYKY 63

Query: 63  KNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIA 122
           K+ L DVKVDTESNI TT T+ ++LPSTK + S+K+PDYNSGK+E+QYFH++A+F +A+ 
Sbjct: 64  KSTLVDVKVDTESNISTTLTVFDVLPSTKLVTSVKLPDYNSGKVEMQYFHENASFATAVG 123

Query: 123 LNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTI 182
           +  SP ++ + T G   +AFGAEAG+DT +G FTKY+A I VTKPD  A+I+L DKGDT+
Sbjct: 124 MKPSPVVEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDYHAAIVLADKGDTV 183

Query: 183 RASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQ 242
           + S V+HLD+ +KS+ V E+TRR STNENT TVGG Y VD  T VKA+LNN GKL ALLQ
Sbjct: 184 KVSGVYHLDDKQKSSVVAELTRRLSTNENTLTVGGLYKVDPETAVKARLNNTGKLAALLQ 243

Query: 243 HEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
           HEV PKS+LTIS E DTKAL++ P+FGLA+AL+P
Sbjct: 244 HEVKPKSVLTISGEFDTKALDRPPKFGLALALRP 277

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P42054|VDAC_PEA Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2

 Score =  289 bits (740), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 144/276 (52%), Positives = 195/276 (70%)

Query: 1   MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQY 60
           M KGPGL+ DIGKKA+DLL KDY++D+K +ISTYS  GVA+TS+  KKG L  GDV  Q 
Sbjct: 1   MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQL 60

Query: 61  KYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSA 120
           K KN+  D+KVDT SN+ TT T+ E  P  KAI S KVP+  SGK+E+QY H++A  +S+
Sbjct: 61  KNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSS 120

Query: 121 IALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGD 180
           + L  +P ++ ++ IGT ++AFGA+  +DT  G  TK  A ++  K D   S+ L +KGD
Sbjct: 121 VGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGD 180

Query: 181 TIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGAL 240
            + ASY H ++ L  +A   +I+ RFST ENTFT+G  +A+D LT VK ++ N GK  AL
Sbjct: 181 LLSASYYHAINPLSNTAVGVDISHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKASAL 240

Query: 241 LQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
           +QHE  PKSL+TISSEVDTKA+EK+ + GL++ALKP
Sbjct: 241 IQHEWRPKSLITISSEVDTKAIEKSAKIGLSLALKP 276

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Pisum sativum (taxid: 3888)

>sp|P42055|VDAC1_SOLTU Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2

 Score =  284 bits (727), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 144/276 (52%), Positives = 185/276 (67%)

Query: 1   MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQY 60
           M KGPGL+ +IGKKA+DLL KDY +D K SI+TYS  GV +TS+  KKG L   DV  Q 
Sbjct: 1   MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQL 60

Query: 61  KYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSA 120
           K KNV  D+KVDT SN+ TT T+ E  P  K I S +VPD  SGKLEVQY HD+A   ++
Sbjct: 61  KNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTS 120

Query: 121 IALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGD 180
           + L  +P ++ +  +GT  IA G +  +DT +G+FTK  AG+S T  D  AS+ L +KGD
Sbjct: 121 VGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGD 180

Query: 181 TIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGAL 240
            + ASY H +  L  +A   E+   FSTNEN  TVG  + +D LT VKA++NN GK  AL
Sbjct: 181 NLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKASAL 240

Query: 241 LQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
           LQHE  PKSL T+S EVDTK+++K  +FGLA+ALKP
Sbjct: 241 LQHEWRPKSLFTVSGEVDTKSVDKGAKFGLALALKP 276

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Solanum tuberosum (taxid: 4113)

>sp|P42056|VDAC2_SOLTU Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2

 Score =  281 bits (720), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 139/276 (50%), Positives = 191/276 (69%)

Query: 1   MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQY 60
           M KGPGL++DIGKKA+DLL +DY +D K +++TYS  GVA+T++ +KKG L   DV+ Q 
Sbjct: 1   MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQL 60

Query: 61  KYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSA 120
           K KN+  DVKVDT SN+ TT T+ E  P  K I S  VPD  SGK+E+QY H++A   ++
Sbjct: 61  KNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTS 120

Query: 121 IALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGD 180
           I L  SP ++ +   G  ++A G +  +DT +GNFTK  AG+S +  D  AS+ L DKGD
Sbjct: 121 IGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGD 180

Query: 181 TIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGAL 240
           T+ ASY H +  +  +A   E+T  FS+NENT T+G  + +D LT VKA++N++GK  AL
Sbjct: 181 TVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASAL 240

Query: 241 LQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
           +QHE  PKSL TIS EVDT+A+EK+ + GLA+ALKP
Sbjct: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Solanum tuberosum (taxid: 4113)

>sp|Q9M2W6|VDAC5_ARATH Putative mitochondrial outer membrane protein porin 5 OS=Arabidopsis thaliana GN=VDAC5 PE=5 SV=1

 Score =  279 bits (714), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 151/276 (54%), Positives = 182/276 (65%), Gaps = 50/276 (18%)

Query: 1   MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQY 60
           MSKGPGLFADIGK AKDLLT+DY+ DQK SIST S +GVALTSTA+K G L A +VA QY
Sbjct: 1   MSKGPGLFADIGKYAKDLLTRDYSTDQKFSISTNSVSGVALTSTALKNGVLHAANVATQY 60

Query: 61  KYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSA 120
           KY+N  FDVK+DT+ N+ +      + P  K ++                  DH T T  
Sbjct: 61  KYRNTFFDVKIDTDFNVKSL-----VYPMNKFVSI-----------------DHNTLT-- 96

Query: 121 IALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGD 180
                                     GYDTTS  FTKY  G+SVTKPD C SIILGDKGD
Sbjct: 97  --------------------------GYDTTSRTFTKYNVGVSVTKPDQCVSIILGDKGD 130

Query: 181 TIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGAL 240
           +I+ASYV++LD   +SA VGE+ R+ STNE T TVGG YAVDHLT VKAKLN++GK GAL
Sbjct: 131 SIKASYVYYLDESTRSATVGEVIRKISTNETTVTVGGLYAVDHLTNVKAKLNSNGKFGAL 190

Query: 241 LQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
           LQHE +PKS++TIS E+DTK L+K PR GL+++LKP
Sbjct: 191 LQHEGLPKSIVTISGEIDTKTLDKYPRLGLSLSLKP 226

Putative channel that allows diffusion of small hydrophilic molecules through membranes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRH5|VDAC1_ARATH Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=VDAC1 PE=1 SV=3

 Score =  275 bits (702), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 138/276 (50%), Positives = 195/276 (70%)

Query: 1   MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQY 60
           M KGPGL+ +IGKKA+DLL KD+N+DQK SI+T+S AGVA+TST  KKG L  GDVA Q 
Sbjct: 1   MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQS 60

Query: 61  KYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSA 120
           + KN+  D+KV T+S  L T T+ E  P  ++I S KVPD NSGK+E+QY H++A  +++
Sbjct: 61  RRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTS 120

Query: 121 IALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGD 180
           + L Q+P ++ +  IG+  +A G +  +DT SGNFTK  AG+S TK D  AS+ + DKGD
Sbjct: 121 MGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGD 180

Query: 181 TIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGAL 240
            + ASY H ++ L  +A   E++ + S+ ++T TVG  +++D LT VKA++N+ G   AL
Sbjct: 181 LLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASAL 240

Query: 241 LQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
           +QHE  PKS  TIS EVDTK+++K+ + GLA+ALKP
Sbjct: 241 IQHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 276

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective (By similarity). Involved in plant development at reproductive stage, is important for pollen development and may regulate hydrogen peroxide generation during disease resistance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K548|VDAC1_ORYSJ Mitochondrial outer membrane protein porin 1 OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3

 Score =  273 bits (698), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 133/273 (48%), Positives = 193/273 (70%), Gaps = 1/273 (0%)

Query: 4   GPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYK 63
           GPGL+ +IGKKA+DLL +DY  D K +++TY+  GVA+T+T+ KK  L  G++ +Q K K
Sbjct: 3   GPGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNK 62

Query: 64  NVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIAL 123
           N+  DVK +++SN++TT T+ E+ P  K+I S  VPD  SGK E+QY HD+A  +++I L
Sbjct: 63  NITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGL 122

Query: 124 NQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIR 183
             SP +++++  GT ++A GA+   DT +GN TKY AG+S +  D  AS+ L +KGD++ 
Sbjct: 123 TASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLT 182

Query: 184 ASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQH 243
           ASY +H+ N   +A   E+T  FS+NEN+ T G  + +D LTVVKA+ NN GK  ALLQH
Sbjct: 183 ASY-YHIVNHSATAVGAELTHSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASALLQH 241

Query: 244 EVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
           E  PKS+ TIS+EVDTKA++K+ + G+A+ALKP
Sbjct: 242 EWRPKSVWTISAEVDTKAIDKSSKVGIAVALKP 274

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SMX3|VDAC3_ARATH Mitochondrial outer membrane protein porin 3 OS=Arabidopsis thaliana GN=VDAC3 PE=1 SV=3

 Score =  267 bits (682), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 135/277 (48%), Positives = 183/277 (66%), Gaps = 4/277 (1%)

Query: 1   MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQY 60
           M KGPGL+ +IGKKA+DLL +DY  DQK S++TYS  GVA+T+T   KG L  GDVA Q 
Sbjct: 1   MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQV 60

Query: 61  KYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSA 120
           K  N   DVKV T+S++LTT T  E  P  K I   K+PD+ SGK EVQYFHD+A  +++
Sbjct: 61  KNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTS 120

Query: 121 IALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGD 180
           +    +P ++ +  +GT  ++ G +  Y+T SGNF  + AG + TK D  AS+IL DKG+
Sbjct: 121 VGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGE 180

Query: 181 TIRASYVHHLDNLKKSAAVG-EITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGA 239
            + ASY      +  S  VG EI+  F+T EN  TVG  +A+D LT VKA++NN G   A
Sbjct: 181 KLNASYYQI---VSPSTVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANA 237

Query: 240 LLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
           L+QHE  PKS  T+S EVD+KA++K+ + G+A+ALKP
Sbjct: 238 LIQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10S27|VDAC6_ORYSJ Mitochondrial outer membrane protein porin 6 OS=Oryza sativa subsp. japonica GN=VDAC6 PE=2 SV=1

 Score =  265 bits (677), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 132/276 (47%), Positives = 181/276 (65%)

Query: 1   MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQY 60
           MSKGP  F +IGK+AKDLL KDYN DQK S++T S +G+ LT+T VK   L  GD+  Q+
Sbjct: 1   MSKGPAPFLNIGKRAKDLLYKDYNFDQKFSLTTTSNSGLGLTATGVKIDELFIGDIQTQH 60

Query: 61  KYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSA 120
           K      DVK+D+ES + TT T+ E L   K   S +VPD  SGKL++QY HDH    S 
Sbjct: 61  KSGKTTVDVKIDSESRVSTTVTVDEALTGLKTSFSFRVPDQKSGKLDLQYLHDHFALNST 120

Query: 121 IALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGD 180
           I L  +P I++ ATIGT  ++ GAE G+D+TS + TKY +GI   K D  A+++L DKG+
Sbjct: 121 IGLTSTPLIELAATIGTNELSAGAEVGFDSTSASVTKYNSGICYNKHDFSAAVLLADKGE 180

Query: 181 TIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGAL 240
           T++ASY+H  +    +    E+T +  T EN FT+G S+A+D  T++K + +N GK+G L
Sbjct: 181 TLKASYIHTFNETNGATVAAEVTHKLKTKENYFTIGSSHAIDSSTLLKTRFSNGGKVGVL 240

Query: 241 LQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
            QHE  PKS ++IS+E D K +    RFG+AIALKP
Sbjct: 241 CQHEWRPKSTVSISAEYDPKVVSSPSRFGVAIALKP 276

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
224081865	276	porin/voltage-dependent anion-selective	1.0	1.0	0.865	1e-135
224071317	276	porin/voltage-dependent anion-selective	1.0	1.0	0.833	1e-131
449460594	276	PREDICTED: mitochondrial outer membrane	1.0	1.0	0.815	1e-130
359480551	276	PREDICTED: mitochondrial outer membrane	1.0	1.0	0.826	1e-130
255568593	276	voltage-dependent anion-selective channe	1.0	1.0	0.822	1e-129
15240765	276	voltage dependent anion channel 2 [Arabi	1.0	1.0	0.778	1e-126
60279272	276	pom30 [Solanum tuberosum]	1.0	1.0	0.797	1e-125
297797633	276	hypothetical protein ARALYDRAFT_496845 [	1.0	1.0	0.775	1e-125
358248542	276	uncharacterized protein LOC100790578 [Gl	1.0	1.0	0.786	1e-125
36957216	276	VDAC2.1 [Lotus japonicus]	1.0	1.0	0.815	1e-124

>gi|224081865|ref|XP_002306507.1| porin/voltage-dependent anion-selective channel protein [Populus trichocarpa] gi|222855956|gb|EEE93503.1| porin/voltage-dependent anion-selective channel protein [Populus trichocarpa]

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/276 (86%), Positives = 257/276 (93%)

Query: 1   MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQY 60
           MSKGPGLFADIGKKAKDLLT+DYN+DQK S+STYS AGVALTSTAVKKGGL AGDVA  Y
Sbjct: 1   MSKGPGLFADIGKKAKDLLTRDYNSDQKFSVSTYSDAGVALTSTAVKKGGLLAGDVATLY 60

Query: 61  KYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSA 120
           KYKN  FDVKVDTESNI  T T T++LPSTK +AS+K+PD+NSGKLE QYFHDHATFT+A
Sbjct: 61  KYKNTTFDVKVDTESNISATLTFTDLLPSTKTVASIKLPDHNSGKLEFQYFHDHATFTTA 120

Query: 121 IALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGD 180
            ALNQSP IDVTATIGTP+IAFGAEAGYDTTSG+FTKYTAGISVTKPDS ASIILGDKGD
Sbjct: 121 AALNQSPAIDVTATIGTPTIAFGAEAGYDTTSGSFTKYTAGISVTKPDSYASIILGDKGD 180

Query: 181 TIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGAL 240
           +IRASYVHHLD LKKSAAVGEITRRFS+NENTFTVGGS+AVDHLTVVKAKLNNHGKLGAL
Sbjct: 181 SIRASYVHHLDLLKKSAAVGEITRRFSSNENTFTVGGSFAVDHLTVVKAKLNNHGKLGAL 240

Query: 241 LQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
           +QHEVIPKS+LTISSE DTKAL+K PRFGLAIALKP
Sbjct: 241 VQHEVIPKSVLTISSEFDTKALDKNPRFGLAIALKP 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071317|ref|XP_002303401.1| porin/voltage-dependent anion-selective channel protein [Populus trichocarpa] gi|222840833|gb|EEE78380.1| porin/voltage-dependent anion-selective channel protein [Populus trichocarpa]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/276 (83%), Positives = 255/276 (92%)

Query: 1   MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQY 60
           MSKGP LFADIGKKAKDLLTKDYN+DQ++S+ST+S AGVALTS+AVKKGGLS GDVAA Y
Sbjct: 1   MSKGPVLFADIGKKAKDLLTKDYNSDQRLSVSTFSDAGVALTSSAVKKGGLSTGDVAALY 60

Query: 61  KYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSA 120
            YKN +FDVK+DTESNI TT T T+ LPSTK IAS+K PDYNSGKLEVQYFHD A+FT+A
Sbjct: 61  MYKNTIFDVKIDTESNISTTLTFTDFLPSTKTIASIKFPDYNSGKLEVQYFHDRASFTTA 120

Query: 121 IALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGD 180
           +ALNQSP IDVTATIGTP+IAFGAEAGYDTT G+FTKYTAGISVTKPDS AS+ILGDKGD
Sbjct: 121 VALNQSPAIDVTATIGTPTIAFGAEAGYDTTLGSFTKYTAGISVTKPDSYASLILGDKGD 180

Query: 181 TIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGAL 240
           ++RASYVHHLD LKKSA  GEITRRFSTNENT T+GGS+ VDHLTVVKAKLN+HGKLGAL
Sbjct: 181 SLRASYVHHLDLLKKSAVAGEITRRFSTNENTLTIGGSFPVDHLTVVKAKLNSHGKLGAL 240

Query: 241 LQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
           +QHEVIPKS+LTISSEVDTKAL+K+PRFGLAIALKP
Sbjct: 241 VQHEVIPKSVLTISSEVDTKALDKSPRFGLAIALKP 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460594|ref|XP_004148030.1| PREDICTED: mitochondrial outer membrane protein porin 2-like [Cucumis sativus] gi|449502740|ref|XP_004161729.1| PREDICTED: mitochondrial outer membrane protein porin 2-like [Cucumis sativus]

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 225/276 (81%), Positives = 253/276 (91%)

Query: 1   MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQY 60
           MSKGPGLF+DIGKKAKDLLT+DY +DQK S+STYS AGV LTSTAVKKGGLS GD+AA Y
Sbjct: 1   MSKGPGLFSDIGKKAKDLLTRDYISDQKFSVSTYSHAGVVLTSTAVKKGGLSTGDIAALY 60

Query: 61  KYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSA 120
           KY+NV FDVKVDTESNI T  TL EI+PSTK IAS+K+PD+NSGKLEVQYFHDHAT  +A
Sbjct: 61  KYRNVTFDVKVDTESNISTIVTLNEIVPSTKTIASVKIPDFNSGKLEVQYFHDHATLATA 120

Query: 121 IALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGD 180
           +ALNQ+P +DV+ATIGTP+IAFGAEAGYDTTSGNFTKY AGISVTKPDS ASIILGDKGD
Sbjct: 121 VALNQNPFVDVSATIGTPTIAFGAEAGYDTTSGNFTKYAAGISVTKPDSSASIILGDKGD 180

Query: 181 TIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGAL 240
           +IRASYVH+LD  K+SAAVGEITR+FSTNENTFTVGGSYAVD LTVVK KLNN+GKLGAL
Sbjct: 181 SIRASYVHYLDQFKRSAAVGEITRKFSTNENTFTVGGSYAVDQLTVVKGKLNNNGKLGAL 240

Query: 241 LQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
           LQHE+IPKSLLTIS E+DTKAL++ P+FGL++ALKP
Sbjct: 241 LQHEIIPKSLLTISGEIDTKALDRVPKFGLSVALKP 276

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480551|ref|XP_002279650.2| PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Vitis vinifera] gi|147772866|emb|CAN75907.1| hypothetical protein VITISV_001975 [Vitis vinifera] gi|296087320|emb|CBI33694.3| unnamed protein product [Vitis vinifera]

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/276 (82%), Positives = 250/276 (90%)

Query: 1   MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQY 60
           MSKGPGLFADIGKKAKDLLT+DY +DQK ++STYS  GVA+TSTAVKKGGLS GDVA QY
Sbjct: 1   MSKGPGLFADIGKKAKDLLTRDYISDQKFTVSTYSDTGVAITSTAVKKGGLSTGDVAVQY 60

Query: 61  KYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSA 120
           KYKN + DVK DT SNI TT T TEI+PSTK IAS K PDYNSGKLEVQYFHDHAT T++
Sbjct: 61  KYKNSVIDVKADTGSNINTTLTFTEIIPSTKTIASFKFPDYNSGKLEVQYFHDHATLTTS 120

Query: 121 IALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGD 180
           +ALNQSP +D++ TIGTPSIAFGAEAGYDTTSG FTKYTAGISV KPDSCASIILGDKGD
Sbjct: 121 VALNQSPAVDLSVTIGTPSIAFGAEAGYDTTSGCFTKYTAGISVAKPDSCASIILGDKGD 180

Query: 181 TIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGAL 240
           TIRASYVHHLD+LKKSAAVGEI+RRFSTN+NTFTVGGSYA+D LT VKAKLNNHG LGAL
Sbjct: 181 TIRASYVHHLDSLKKSAAVGEISRRFSTNDNTFTVGGSYAIDPLTNVKAKLNNHGNLGAL 240

Query: 241 LQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
           LQHE+IPKS+LT+S E DTKAL+KTPRFGLA+ALKP
Sbjct: 241 LQHEIIPKSILTLSGEFDTKALDKTPRFGLALALKP 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568593|ref|XP_002525270.1| voltage-dependent anion-selective channel, putative [Ricinus communis] gi|223535428|gb|EEF37098.1| voltage-dependent anion-selective channel, putative [Ricinus communis]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/276 (82%), Positives = 253/276 (91%)

Query: 1   MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQY 60
           MSKGPGLF+DIGKKAKDLL KDY++DQK ++STYS AGVALTS+A+KKGGLS GDVAA Y
Sbjct: 1   MSKGPGLFSDIGKKAKDLLIKDYSSDQKFAVSTYSDAGVALTSSALKKGGLSTGDVAALY 60

Query: 61  KYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSA 120
           KYKN L DVKVDTESNI TT T TEILPSTKAIAS K+PDYNSGKLEVQYFHDHATFT+A
Sbjct: 61  KYKNTLLDVKVDTESNISTTLTFTEILPSTKAIASFKLPDYNSGKLEVQYFHDHATFTTA 120

Query: 121 IALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGD 180
           +AL++SP +DV+ATIGTP+IAFGAEA YDTT+GNFTKYT+GISVTKPDSCASIILG KGD
Sbjct: 121 LALSKSPGVDVSATIGTPAIAFGAEASYDTTTGNFTKYTSGISVTKPDSCASIILGHKGD 180

Query: 181 TIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGAL 240
           TI+ASY+H+LD  KKSA V EI+RRFSTNENT TVGGSYAVDHLTVVKAKLNN+GKLGAL
Sbjct: 181 TIKASYLHYLDQSKKSAGVAEISRRFSTNENTITVGGSYAVDHLTVVKAKLNNYGKLGAL 240

Query: 241 LQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
           LQHE+IPKS++TISSE DTKALEK P+FG A ALKP
Sbjct: 241 LQHEIIPKSMVTISSEFDTKALEKHPKFGFAFALKP 276

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240765|ref|NP_201551.1| voltage dependent anion channel 2 [Arabidopsis thaliana] gi|75171123|sp|Q9FJX3.1|VDAC2_ARATH RecName: Full=Mitochondrial outer membrane protein porin 2; AltName: Full=Voltage-dependent anion-selective channel protein 2; Short=AtVDAC2; Short=VDAC-2 gi|9757871|dbj|BAB08458.1| porin-like protein [Arabidopsis thaliana] gi|21537313|gb|AAM61654.1| porin-like protein [Arabidopsis thaliana] gi|107738407|gb|ABF83692.1| At5g67500 [Arabidopsis thaliana] gi|332010969|gb|AED98352.1| voltage dependent anion channel 2 [Arabidopsis thaliana]

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 215/276 (77%), Positives = 247/276 (89%)

Query: 1   MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQY 60
           MSKGPGLF DIGKKAKDLLT+DYN+DQK SISTYS +GVALTSTA+KKGG+ A DVA QY
Sbjct: 1   MSKGPGLFTDIGKKAKDLLTRDYNSDQKFSISTYSASGVALTSTALKKGGVHAADVATQY 60

Query: 61  KYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSA 120
           KYKN LFDVK+DT+S++LTT TLTEILPSTKAIAS KVPDYNS KLEVQYFHDHAT T+A
Sbjct: 61  KYKNALFDVKIDTDSSVLTTVTLTEILPSTKAIASFKVPDYNSAKLEVQYFHDHATVTAA 120

Query: 121 IALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGD 180
            AL Q+P ID+TAT+G+P I+FGAEAGYDTTS  FTKY AGISVTKPD+C SIILGDKGD
Sbjct: 121 AALKQNPLIDITATLGSPVISFGAEAGYDTTSKTFTKYNAGISVTKPDACLSIILGDKGD 180

Query: 181 TIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGAL 240
           +++ASY+HH D  K++AAVGE+ R+FSTNENT TVGG YA+DH T VKAKLNNHG LGAL
Sbjct: 181 SLKASYLHHFDEFKRTAAVGEVYRKFSTNENTITVGGLYAIDHSTAVKAKLNNHGTLGAL 240

Query: 241 LQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
           LQHEV+P+SL+T+SSE+DTKALEK PRFGL++ALKP
Sbjct: 241 LQHEVLPRSLVTVSSEIDTKALEKHPRFGLSLALKP 276

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60279272|emb|CAA63968.1| pom30 [Solanum tuberosum]

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/276 (79%), Positives = 244/276 (88%)

Query: 1   MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQY 60
           MSKGPGLFADIGKKA+DLLTKDY +DQK+SISTYS  GVALTSTAVKKGGLS GDV AQY
Sbjct: 1   MSKGPGLFADIGKKARDLLTKDYISDQKLSISTYSDTGVALTSTAVKKGGLSTGDVGAQY 60

Query: 61  KYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSA 120
           KYKN L DVKVDT SNI TT TL +I PSTK IASLK PDY+SGKLEVQY+H HA F++A
Sbjct: 61  KYKNTLIDVKVDTASNISTTLTLNDIAPSTKTIASLKFPDYSSGKLEVQYYHHHAAFSTA 120

Query: 121 IALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGD 180
           + L QSP +D++ T+GTP+ A GAEA Y+T  G   KYTAGISVTKPDSCA+IILGDKGD
Sbjct: 121 VGLKQSPIVDLSVTLGTPTFAIGAEASYETAEGKLAKYTAGISVTKPDSCAAIILGDKGD 180

Query: 181 TIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGAL 240
           TI+ASY+HHLD LKKSAAVGEITRRFSTNENTFTVGGSYAVD+LT+VK KLNNHG LGAL
Sbjct: 181 TIKASYIHHLDELKKSAAVGEITRRFSTNENTFTVGGSYAVDNLTIVKLKLNNHGNLGAL 240

Query: 241 LQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
           LQHE+IPKSLLTISSE DTKALEKTP+FG+A+ALKP
Sbjct: 241 LQHELIPKSLLTISSEFDTKALEKTPKFGVALALKP 276

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797633|ref|XP_002866701.1| hypothetical protein ARALYDRAFT_496845 [Arabidopsis lyrata subsp. lyrata] gi|297312536|gb|EFH42960.1| hypothetical protein ARALYDRAFT_496845 [Arabidopsis lyrata subsp. lyrata]

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/276 (77%), Positives = 246/276 (89%)

Query: 1   MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQY 60
           MS GPGLF DIGKKAKDLLT+DYN+DQK SISTYS +GVALTSTA+KKGG+ A DVA QY
Sbjct: 1   MSNGPGLFTDIGKKAKDLLTRDYNSDQKFSISTYSASGVALTSTALKKGGVHAADVATQY 60

Query: 61  KYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSA 120
           KYKN LFDVK+DT+S++LTT TLTEILPSTKAIAS KVPDYNS KLEVQYFHDHAT T+A
Sbjct: 61  KYKNALFDVKIDTDSSVLTTVTLTEILPSTKAIASFKVPDYNSAKLEVQYFHDHATVTAA 120

Query: 121 IALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGD 180
            AL Q+P ID+TAT+G+P I+FGAEAGYDTTS  FTKY AGISVTKPD+C SIILGDKGD
Sbjct: 121 AALKQNPLIDITATLGSPVISFGAEAGYDTTSKTFTKYNAGISVTKPDACLSIILGDKGD 180

Query: 181 TIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGAL 240
           +++ASY+HH D  K++AAVGE+ R+FSTNENT TVGG YA+DH T VKAKLNNHG LGAL
Sbjct: 181 SLKASYLHHFDEFKRTAAVGEVYRKFSTNENTITVGGLYAIDHSTSVKAKLNNHGTLGAL 240

Query: 241 LQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
           LQHEV+P+SL+T+SSE+DTKALEK PRFGL++ALKP
Sbjct: 241 LQHEVLPRSLVTVSSEIDTKALEKHPRFGLSLALKP 276

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248542|ref|NP_001239899.1| uncharacterized protein LOC100790578 [Glycine max] gi|255642910|gb|ACU22675.1| unknown [Glycine max]

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/276 (78%), Positives = 248/276 (89%)

Query: 1   MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQY 60
           MSKGPGLF DIGKK+KDLLTKDYN+DQK++IS+YS +GVALTST+VKKGGLS GDVAA Y
Sbjct: 1   MSKGPGLFTDIGKKSKDLLTKDYNSDQKLTISSYSISGVALTSTSVKKGGLSTGDVAALY 60

Query: 61  KYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSA 120
           KYKN + DVK+DT S I TT T  ++LPSTK IAS K+PDYNSGKLEVQYFHDHAT T+A
Sbjct: 61  KYKNTIIDVKLDTASTISTTLTFNDVLPSTKTIASFKLPDYNSGKLEVQYFHDHATLTTA 120

Query: 121 IALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGD 180
           +AL QSP IDV+AT+GTP+IA GAEAGYDT+SG FTKYTAGISVT+PDS AS+ILGDKGD
Sbjct: 121 VALKQSPVIDVSATVGTPTIALGAEAGYDTSSGGFTKYTAGISVTRPDSSASVILGDKGD 180

Query: 181 TIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGAL 240
           +I+ASY+HHLD LKKSAAV EITR+FSTNEN FTVGGS+AVD LT VKA+LNNHGKLGAL
Sbjct: 181 SIKASYLHHLDLLKKSAAVAEITRKFSTNENIFTVGGSFAVDPLTQVKARLNNHGKLGAL 240

Query: 241 LQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
           LQHE+IPKS+ T+S E+DTKAL+K PRFGLAIALKP
Sbjct: 241 LQHEIIPKSVFTVSGEIDTKALDKKPRFGLAIALKP 276

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|36957216|gb|AAQ87022.1| VDAC2.1 [Lotus japonicus]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 225/276 (81%), Positives = 252/276 (91%)

Query: 1   MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQY 60
           MSKGPGLF+DIGKK +DLLTKDY++DQK+++S+YS AGVALTSTAVKKGGLS GDVAA Y
Sbjct: 1   MSKGPGLFSDIGKKPRDLLTKDYSSDQKLTVSSYSTAGVALTSTAVKKGGLSVGDVAALY 60

Query: 61  KYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSA 120
           KYKN L DVK+DT S I TT T T++LPSTKAIAS K+PDYNSGKLEVQYFHDHAT T+A
Sbjct: 61  KYKNTLIDVKLDTASIISTTLTFTDLLPSTKAIASFKLPDYNSGKLEVQYFHDHATLTAA 120

Query: 121 IALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGD 180
            ALNQSP IDV+AT GTP IA GAEAGYDT+SG FTKYTAGISVTKPD+ ASIILGDKGD
Sbjct: 121 AALNQSPIIDVSATFGTPVIAVGAEAGYDTSSGGFTKYTAGISVTKPDASASIILGDKGD 180

Query: 181 TIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGAL 240
           +I+ASY+HHLD LKKSAAV EITR+FSTNENTFTVGGS+A+DHLT V+A+LNNHGKLGAL
Sbjct: 181 SIKASYLHHLDQLKKSAAVAEITRKFSTNENTFTVGGSFAIDHLTQVRARLNNHGKLGAL 240

Query: 241 LQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
           LQHE+IPKS+LTISSEVDTKAL+K PRFGLAIALKP
Sbjct: 241 LQHEIIPKSVLTISSEVDTKALDKNPRFGLAIALKP 276

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
TAIR|locus:2100252	276	VDAC1 "voltage dependent anion	1.0	1.0	0.5	7e-70
TAIR|locus:2147820	274	VDAC3 "voltage dependent anion	0.989	0.996	0.487	1.7e-68
TAIR|locus:2174517	274	VDAC4 "voltage dependent anion	0.992	1.0	0.467	7.4e-66
TAIR|locus:2097425	226	VDAC5 "voltage dependent anion	0.807	0.986	0.495	3e-46
FB|FBgn0004363	282	porin "porin" [Drosophila mela	0.916	0.897	0.233	2.1e-15
UNIPROTKB|E1C2E3	283	VDAC3 "Uncharacterized protein	0.916	0.893	0.248	6e-13
ASPGD|ASPL0000077985	284	AN4402 [Emericella nidulans (t	0.934	0.908	0.270	8.5e-13
DICTYBASE|DDB_G0271848	275	porA "porin" [Dictyostelium di	0.952	0.956	0.262	1.9e-12
WB|WBGene00019900	283	R05G6.7 [Caenorhabditis elegan	0.967	0.943	0.239	1.5e-11
ZFIN|ZDB-GENE-040426-954	281	zgc:56235 "zgc:56235" [Danio r	0.909	0.893	0.251	6.4e-11

TAIR|locus:2100252 VDAC1 "voltage dependent anion channel 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 138/276 (50%), Positives = 195/276 (70%)

Query:     1 MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQY 60
             M KGPGL+ +IGKKA+DLL KD+N+DQK SI+T+S AGVA+TST  KKG L  GDVA Q 
Sbjct:     1 MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQS 60

Query:    61 KYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSA 120
             + KN+  D+KV T+S  L T T+ E  P  ++I S KVPD NSGK+E+QY H++A  +++
Sbjct:    61 RRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTS 120

Query:   121 IALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGD 180
             + L Q+P ++ +  IG+  +A G +  +DT SGNFTK  AG+S TK D  AS+ + DKGD
Sbjct:   121 MGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGD 180

Query:   181 TIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGAL 240
              + ASY H ++ L  +A   E++ + S+ ++T TVG  +++D LT VKA++N+ G   AL
Sbjct:   181 LLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASAL 240

Query:   241 LQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
             +QHE  PKS  TIS EVDTK+++K+ + GLA+ALKP
Sbjct:   241 IQHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 276

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS;IMP

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009617 "response to bacterium" evidence=IEP

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2147820 VDAC3 "voltage dependent anion channel 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
 Identities = 135/277 (48%), Positives = 185/277 (66%)

Query:     1 MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQY 60
             M KGPGL+ +IGKKA+DLL +DY  DQK S++TYS  GVA+T+T   KG L  GDVA Q 
Sbjct:     1 MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQV 60

Query:    61 KYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSA 120
             K  N   DVKV T+S++LTT T  E  P  K I   K+PD+ SGK EVQYFHD+A  +++
Sbjct:    61 KNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTS 120

Query:   121 IALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGD 180
             +    +P ++ +  +GT  ++ G +  Y+T SGNF  + AG + TK D  AS+IL DKG+
Sbjct:   121 VGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGE 180

Query:   181 TIRASYVHHLDNLKKSAAVG-EITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGA 239
              + ASY + +  +  S  VG EI+  F+T EN  TVG  +A+D LT VKA++NN G   A
Sbjct:   181 KLNASY-YQI--VSPSTVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANA 237

Query:   240 LLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
             L+QHE  PKS  T+S EVD+KA++K+ + G+A+ALKP
Sbjct:   238 LIQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS;IMP

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0009060 "aerobic respiration" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

TAIR|locus:2174517 VDAC4 "voltage dependent anion channel 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 129/276 (46%), Positives = 181/276 (65%)

Query:     1 MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQY 60
             M   P  FADIGKKAKDLL KDY  D K +++  S  G    +T +KK     GD++  Y
Sbjct:     1 MGSSPAPFADIGKKAKDLLNKDYIFDHKFTLTMLSATGTEFVATGLKKDDFFFGDISTLY 60

Query:    61 KYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSA 120
             K +N + D+K+D+ S++ T  TL  +LPS KA+ S K+PD+ SGKL+VQY H HAT  S+
Sbjct:    61 KGQNTIVDLKIDSHSSVSTKVTLKNLLPSAKAVISFKIPDHKSGKLDVQYVHPHATLNSS 120

Query:   121 IALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGD 180
             I LN +P +D++ATIG+ ++  G E  +DT S + TKY AGI        A++IL DKG+
Sbjct:   121 IGLNPTPLLDLSATIGSQNVCLGGEVSFDTASSSLTKYNAGIGFNNQGVSAALILEDKGE 180

Query:   181 TIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGAL 240
             ++RA+YVH ++      A  E+ RRFS   N+FTVG S++VD  TVVK + +N GK G +
Sbjct:   181 SLRATYVHTVNPTTSFGA--ELIRRFSNYNNSFTVGSSHSVDQFTVVKTRFSNSGKAGMV 238

Query:   241 LQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
             +Q E  PKS +T S+E D+KA+  +P+ GLA+ALKP
Sbjct:   239 VQREWRPKSHITFSAEYDSKAVTSSPKLGLALALKP 274

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS;IMP

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

TAIR|locus:2097425 VDAC5 "voltage dependent anion channel 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 116/234 (49%), Positives = 148/234 (63%)

Query:    46 VKKG-GLSAGDVAAQYKY-KNVLF-DVKVDTESNILTTFTLTEILPSTKAIASLKVPDYN 102
             + KG GL A D+    KY K++L  D   D + +I T       L ST    +LK    +
Sbjct:     1 MSKGPGLFA-DIG---KYAKDLLTRDYSTDQKFSISTNSVSGVALTST----ALKNGVLH 52

Query:   103 SGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGI 162
             +  +  QY + +  F   I  + +    V       SI      GYDTTS  FTKY  G+
Sbjct:    53 AANVATQYKYRNTFFDVKIDTDFNVKSLVYPMNKFVSIDHNTLTGYDTTSRTFTKYNVGV 112

Query:   163 SVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVD 222
             SVTKPD C SIILGDKGD+I+ASYV++LD   +SA VGE+ R+ STNE T TVGG YAVD
Sbjct:   113 SVTKPDQCVSIILGDKGDSIKASYVYYLDESTRSATVGEVIRKISTNETTVTVGGLYAVD 172

Query:   223 HLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
             HLT VKAKLN++GK GALLQHE +PKS++TIS E+DTK L+K PR GL+++LKP
Sbjct:   173 HLTNVKAKLNSNGKFGALLQHEGLPKSIVTISGEIDTKTLDKYPRLGLSLSLKP 226

GO:0005739 "mitochondrion" evidence=ISM

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0004363 porin "porin" [Drosophila melanogaster (taxid:7227)]

 Score = 198 (74.8 bits), Expect = 2.1e-15, P = 2.1e-15
 Identities = 62/266 (23%), Positives = 121/266 (45%)

Query:     5 PGLFADIGKKAKDLLTKDYNADQ-KISISTYSGAGVALTST--AVKKGGLSAGDVAAQYK 61
             P  ++D+GK+A+D+ +K YN    K+ + T + +G+   +   + ++ G   G +  +YK
Sbjct:     3 PPSYSDLGKQARDIFSKGYNFGLWKLDLKTKTSSGIEFNTAGHSNQESGKVFGSLETKYK 62

Query:    62 YKN--VLFDVKVDTESNILTTFTLTE-ILPSTK-AIASLKVPDYNS--GKLEVQYFHDHA 115
              K+  +    K +T++ + T   + + +L   K ++     P   +  GK +V Y H++ 
Sbjct:    63 VKDYGLTLTEKWNTDNTLFTEVAVQDQLLEGLKLSLEGNFAPQSGNKNGKFKVAYGHENV 122

Query:   116 TFTSAIALN-QSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASII 174
                S + ++ + P I+ +A +G      G +  +DT     T     +  T  D      
Sbjct:   123 KADSDVNIDLKGPLINASAVLGYQGWLAGYQTAFDTQQSKLTTNNFALGYTTKDFVLHTA 182

Query:   175 LGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNH 234
             + D G     S      + K    V +++    T+   F +G  Y +D    V+AK+NN 
Sbjct:   183 VND-GQEFSGSIFQRTSD-KLDVGV-QLSWASGTSNTKFAIGAKYQLDDDASVRAKVNNA 239

Query:   235 GKLGALLQHEVIPKSLLTISSEVDTK 260
              ++G   Q ++     LT+S+ VD K
Sbjct:   240 SQVGLGYQQKLRDGVTLTLSTLVDGK 265

GO:0005741 "mitochondrial outer membrane" evidence=ISS;NAS

GO:0008308 "voltage-gated anion channel activity" evidence=ISS;IDA

GO:0006839 "mitochondrial transport" evidence=ISS

GO:0016006 "Nebenkern" evidence=IDA

GO:0006811 "ion transport" evidence=IDA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0007602 "phototransduction" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0030382 "sperm mitochondrion organization" evidence=IMP

GO:0007291 "sperm individualization" evidence=IMP

UNIPROTKB|E1C2E3 VDAC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 184 (69.8 bits), Expect = 6.0e-13, P = 6.0e-13
 Identities = 66/266 (24%), Positives = 116/266 (43%)

Query:     5 PGLFADIGKKAKDLLTKDYNADQ-KISISTYSGAGVALTSTAVKKG--GLSAGDVAAQYK 61
             P  ++D+GK A+D+  K Y     K+ + T S +GV  T+T       G + G++  +YK
Sbjct:     4 PPSYSDLGKAARDVFNKGYGFGMVKLELKTKSSSGVEFTATGSSNTDTGKALGNLETKYK 63

Query:    62 YKN--VLFDVKVDTESNILTTFTLTEILPSTKAIA--SLKVPDYN--SGKLEVQYFHDHA 115
              K+  + F  K +T++ + T  ++ + L     +A  ++ VP+    SGKL+  Y  D+ 
Sbjct:    64 IKDYGLTFIQKWNTDNTLGTEVSMEDQLAEGLKVALDTIFVPNTGKKSGKLKTSYRRDYV 123

Query:   116 TFTSAIALNQS-PCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASII 174
                  I ++ S P I   A +G      G +  +DT     ++    +     D      
Sbjct:   124 NLGCNIDIDLSGPTIYGWAVLGYEGWLAGYQMAFDTAKSKLSQNNFALGYKAGDFQLHTN 183

Query:   175 LGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNH 234
             + D G     S    ++N K   +V  +     +N   F +   Y +D  T + AK+NN 
Sbjct:   184 VND-GTEFGGSIYQKVNN-KVETSVN-LAWTAGSNNTRFGIAAKYQLDEKTSIGAKVNNA 240

Query:   235 GKLGALLQHEVIPKSLLTISSEVDTK 260
               +G      + P   LT+S  +D K
Sbjct:   241 SLIGIGYTLALRPGVKLTLSGLIDGK 266

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0001662 "behavioral fear response" evidence=ISS

GO:0007268 "synaptic transmission" evidence=ISS

GO:0007612 "learning" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

ASPGD|ASPL0000077985 AN4402 [Emericella nidulans (taxid:162425)]

 Score = 183 (69.5 bits), Expect = 8.5e-13, P = 8.5e-13
 Identities = 73/270 (27%), Positives = 109/270 (40%)

Query:     5 PGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKG---GLSAGDVAAQY- 60
             P  F+DI K A DLL KD+      S+   S A   +T     K    G  AG + A+Y 
Sbjct:     4 PAAFSDIAKAANDLLNKDFYHGSAASLEVKSKAPNGVTFNVKGKSAHEGPIAGSLEAKYV 63

Query:    61 KYKNVLFDVKVDTESNILTT-FTL-TEILPSTKA-IASLKVPDYNS--GKLEVQYFHDHA 115
                  L   +  T +N L T   L   I    KA I +  +P   S   KL + +   + 
Sbjct:    64 DAPTGLTLTQAWTTANALDTKLELDNNIAKGLKAEIITQYLPAKQSKGAKLNLHFKQPNL 123

Query:   116 TFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIIL 175
                +   L   P  +  A +G      GAE GYD      TKY+A +  + P   A+I  
Sbjct:   124 HARAFFDLLNGPSANFDAVLGHEGFLVGAEGGYDVQKAAITKYSAAVGYSVPQYSAAIQA 183

Query:   176 GDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHG 235
              +      ASY H + N +  A         + N     V   Y +D  +  K K+N+ G
Sbjct:   184 ANNLTVFSASYYHRV-NAQVEAGAKATWDSKTGNSVGLEVASKYRLDPSSFAKVKINDRG 242

Query:   236 KLGALLQHEVI-PKSLLTISSEVDTKALEK 264
              + AL  + ++ P   L + +  DT+ L +
Sbjct:   243 -IAALAYNVLLRPGVTLGLGASFDTQNLNQ 271

GO:0005576 "extracellular region" evidence=IDA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006820 "anion transport" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0051027 "DNA transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

DICTYBASE|DDB_G0271848 porA "porin" [Dictyostelium discoideum (taxid:44689)]

 Score = 180 (68.4 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 73/278 (26%), Positives = 121/278 (43%)

Query:     5 PGLFADIGKKAKDLLTKDYNADQKISISTYSGA-GVALTSTAVKKGGLSAG-DVAAQY-K 61
             PGL+AD+ K   D + KD+    K+  +T+ G  G  +  T +K  G+ A     A + K
Sbjct:     3 PGLYADLTKPTADFIKKDFAETFKLD-TTFKGKYGSIVAVTDIKDSGVVASIQPKADFTK 61

Query:    62 YKNVLFD--VKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTS 119
             Y   + +    VDT       FT+  I+P  KA+A+       +   E QY  D   FT 
Sbjct:    62 YLGKVSNGNFTVDTNGVKKGEFTIENIIPGLKAVAN--GDSKQNFSTEFQYKKDKIAFTL 119

Query:   120 AIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVT-KPDSCASIILGDK 178
                 N+S    +   I  P+ + G +A             A I++  +PD   SI+    
Sbjct:   120 FGHNNKSFNTSLAFLIN-PTFSVGVQAE-GNAKNTLKNVNATITIRPRPDVFVSIVDRFM 177

Query:   179 GDTIRASYVHHLDNLKKSAAVGEITRRFSTNEN--TFTVGGSYAVDHLTVVKAKLNNHGK 236
                I  S ++   + K S A G++T     +E   +F VG  Y +D  +++KAK+NN+ K
Sbjct:   178 DKQILLSTLYTATS-KLSFA-GDVTVDLKASEKAPSFNVGTQYKIDSASLLKAKVNNNRK 235

Query:   237 LGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIAL 274
             +     +     +   +   V+TK  ++   FG  + L
Sbjct:   236 VNISYIYNTSNNTKFVLGWNVNTKNFKQGNTFGATVNL 273

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0034765 "regulation of ion transmembrane transport" evidence=IDA

GO:0015288 "porin activity" evidence=IEA;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA;IDA

GO:0005244 "voltage-gated ion channel activity" evidence=IDA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0006820 "anion transport" evidence=IEA

GO:0046930 "pore complex" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

WB|WBGene00019900 R05G6.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 174 (66.3 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 68/284 (23%), Positives = 116/284 (40%)

Query:     5 PGLFADIGKKAKDLLTKDYNAD-QKISISTYSGAG--VALTSTAVKK--GGLSAGDVAAQ 59
             P  FAD+GK AKDL  K YN    KI  +T +G    V   S A      G   G++  +
Sbjct:     3 PPTFADLGKSAKDLFNKGYNFGFLKIDSTTRAGDNKEVEFKSAASHNIGSGKLGGNLDVK 62

Query:    60 YKYKN--VLFDVKVDTESNILTTFTLTEILPSTKAIA--SLKVPDYN--SGKLEVQYFHD 113
             YK     +    K +TE+ + T   + E       +   SL  P     SGK+++ +   
Sbjct:    63 YKIPQYGITLTEKWNTENQLGTVIEVNEQFGRGLKVTLDSLYAPHAGKRSGKVKLDWALP 122

Query:   114 HATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASI 173
              A  T+ + +  +P I+            GA A +D++S      +     + P      
Sbjct:   123 TARVTADVGVTSAPVINAAGVFSRDGWLIGAAATFDSSSNKLAATSLAFGHSTPQYTLHS 182

Query:   174 ILGDKGDTIRASYVHHL-DNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLN 232
              + +  D   AS  H +  N++    +G    +   N   + +   YA      V+AK+N
Sbjct:   183 FVINSTD-FGASLYHKVASNVEVGTQLGW---KVGGNGADYALATKYAPSRDLTVRAKVN 238

Query:   233 NHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 276
             +  ++     H + P   LT+S++ +  A +   +FGL +   P
Sbjct:   239 SSSQVAVAATHSLSPALKLTLSTQFNLAAND-AHKFGLGLEFDP 281

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006820 "anion transport" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

ZFIN|ZDB-GENE-040426-954 zgc:56235 "zgc:56235" [Danio rerio (taxid:7955)]

 Score = 169 (64.5 bits), Expect = 6.4e-11, P = 6.4e-11
 Identities = 67/266 (25%), Positives = 112/266 (42%)

Query:     5 PGLFADIGKKAKDLLTKDYNAD-QKISISTYSGAGVAL-TSTAVKKG-GLSAGDVAAQYK 61
             P  ++D+GK AKD+ +K Y     K+ + T S  GV   TS +     G +AG +  +YK
Sbjct:     4 PPAYSDLGKSAKDIFSKGYGFGIVKLDLKTKSQNGVEFNTSGSTNTDTGKAAGSLETKYK 63

Query:    62 YKNV--LFDVKVDTESNILTTFTLTE--ILPSTK-AIASLKVPDYN--SGKLEVQYFHDH 114
              K++   F+ K +T+ N+LTT    E  +    K A+ +  VP+    SGKL+  Y  + 
Sbjct:    64 LKDLGLSFNQKWNTD-NMLTTEVSVEDQLAEGLKVALDTSFVPNTGKKSGKLKTSYKREF 122

Query:   115 ATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASII 174
                +  +   + P +   A +G      G    +DT      +    +     D      
Sbjct:   123 VNVSCDLDF-EGPVVHSAAVLGYEGWLLGYLVAFDTAKSKLVQNNFALGYKTGDFQLHTN 181

Query:   175 LGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNH 234
             + D  +   + Y    D L+ +  +        +N   F V   Y +D    + AK+NN 
Sbjct:   182 VNDGAEFGGSVYQKVSDQLETAVTLAWTA---GSNNTRFGVAAKYQLDKDASLSAKVNNA 238

Query:   235 GKLGALLQHEVIPKSLLTISSEVDTK 260
               +G      + P   LT+S+ VD K
Sbjct:   239 SLIGIGYTQSLRPGVKLTLSALVDGK 264

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006820 "anion transport" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84P97	VDAC5_ORYSJ	No assigned EC number	0.6423	0.9927	0.9891	yes	no
P42056	VDAC2_SOLTU	No assigned EC number	0.5036	1.0	1.0	N/A	no
P42055	VDAC1_SOLTU	No assigned EC number	0.5217	1.0	1.0	N/A	no
P42054	VDAC_PEA	No assigned EC number	0.5217	1.0	1.0	N/A	no
Q9FJX3	VDAC2_ARATH	No assigned EC number	0.7789	1.0	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	276
pfam01459	272	pfam01459, Porin_3, Eukaryotic porin	9e-84
cd07306	276	cd07306, Porin3_VDAC, Voltage-dependent anion chan	1e-82
cd07303	274	cd07303, Porin3, Eukaryotic porin family that form	1e-08
cd07305	279	cd07305, Porin3_Tom40, Translocase of outer mitoch	7e-08

>gnl|CDD|216515 pfam01459, Porin_3, Eukaryotic porin

 Score =  251 bits (644), Expect = 9e-84
 Identities = 111/274 (40%), Positives = 158/274 (57%), Gaps = 10/274 (3%)

Query: 4   GPGLFADIGKKAKDLLTKDYNAD-QKISISTYSGAGVALTSTAVKK--GGLSAGDVAAQY 60
            PG + DIGK+A+DLL KDY+ D  K+ ++T S  GVA T +  K   GGLS+GD  A+Y
Sbjct: 1   NPGTYEDIGKEARDLLNKDYHFDGAKLDVTTKSPLGVAFTVSGSKSLGGGLSSGDFEAKY 60

Query: 61  KYKNVLFDVKVDTESNILTTFTLTEIL-PSTKAIASLKVPD---YNSGKLEVQYFHDHAT 116
           K K +   +K DT++++ T  T+ + L P  K   S ++       S KLE++Y  D  T
Sbjct: 61  KDKGLTLTLKWDTDNDLSTNATVNDQLAPGLKLKLSTQLVPGTGKKSAKLELEYKGDDFT 120

Query: 117 FTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILG 176
            +  + L + P +  +A  G   +A GAEA YDT SG  TKY A +     D  AS+ L 
Sbjct: 121 ASLKVGLLKGPIVVGSALQGVTGLALGAEAVYDTASGKLTKYNAALGYAARDYIASLTLN 180

Query: 177 DKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGK 236
           +KGD + ASY H +    K     E+T  FS+NE T TVG  Y +D  T VKAK++++GK
Sbjct: 181 NKGDVLTASYYHKVS--DKLEVGAELTWNFSSNETTTTVGYKYDLDPSTTVKAKVDSNGK 238

Query: 237 LGALLQHEVIPKSLLTISSEVDT-KALEKTPRFG 269
           +G LL+  + P   LT+S+EVD  K +E   +FG
Sbjct: 239 VGLLLEKRLRPGVTLTLSAEVDHKKLIEGAHKFG 272

Length = 272

>gnl|CDD|132767 cd07306, Porin3_VDAC, Voltage-dependent anion channel of the outer mitochondrial membrane

 Score =  249 bits (638), Expect = 1e-82
 Identities = 104/279 (37%), Positives = 146/279 (52%), Gaps = 11/279 (3%)

Query: 5   PGLFADIGKKAKDLLTKDYN-ADQKISISTYSGAGVALTSTAVKKGGLSA--GDVAAQYK 61
           P  + DIGK AKDLLTK YN    K+ + T +  GV  TST  KK       G + A+YK
Sbjct: 1   PPTYFDIGKSAKDLLTKGYNFGAWKLDVKTKTPNGVEFTSTGSKKPDTGKVSGSLEAKYK 60

Query: 62  YKNVLFDVKVDTESNILTTFTLTE-ILPSTKAIASLKVP---DYNSGKLEVQYFHDHATF 117
            K +    K +T++ +LT  T+ + + P  K       P      SGKL+  Y HD    
Sbjct: 61  IKGLTLTQKWNTDNVLLTEITIEDLLAPGLKLTLDTTFPPNTGKKSGKLKAGYKHDPINI 120

Query: 118 TSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGD 177
            + + LN+ P +  +A +G      GAE  YDT    FTKY   +  T  D   S+ L +
Sbjct: 121 NADVDLNKGPLVGASAVLGYKGFLLGAEVVYDTAKSKFTKYNFALGYTNGDFELSLKLNN 180

Query: 178 KGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKL 237
            G T+R SY H +    + A   ++T    TNE TF VGG YA+D   +VKAK+NN G+L
Sbjct: 181 -GKTLRGSYFHKVS--PRLAVGAKVTWYSGTNETTFAVGGQYALDPDALVKAKVNNDGQL 237

Query: 238 GALLQHEVIPKSLLTISSEVDTKAL-EKTPRFGLAIALK 275
           G   QH++ P   LT+S+  D K L +   +FGL+++LK
Sbjct: 238 GLSYQHKLRPGVTLTLSAGFDAKNLNQGGHKFGLSLSLK 276

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies. Length = 276

>gnl|CDD|132765 cd07303, Porin3, Eukaryotic porin family that forms channels in the mitochondrial outer membrane

 Score = 54.6 bits (131), Expect = 1e-08
 Identities = 57/277 (20%), Positives = 96/277 (34%), Gaps = 17/277 (6%)

Query: 8   FADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVL- 66
           +A++GK A+DL TK Y    K+ + T S      + +A  +   S   V    + K    
Sbjct: 2   YAELGKSARDLFTKGYGGGIKLDVKTKSELEFTSSGSANTETIESTTKVGGSLETKYRWS 61

Query: 67  -----FDVKVDTESNILTTFT----LTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATF 117
                F  K +T++ +    T    L+  L ST   +        + K  ++  +     
Sbjct: 62  PYGLTFTEKWNTDNTLGLEITVEDQLSRGLKSTFDSSFSPNTGKKNAK--IKTGYKRINL 119

Query: 118 TSAIAL-NQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILG 176
              +      P I     +G      G +  ++T S       A    T  +   +    
Sbjct: 120 GCDVDFDIAGPLIRGALVLGYEGWLAGYQMVFETVSRVTQSNFAVGYKTDYNEFQAHTNV 179

Query: 177 DKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENT-FTVGGSYAVDHLTVVKAKLNNHG 235
           + G     S  H +++  +       T     N NT F +   Y VD      A +NN  
Sbjct: 180 NDGTEFGGSIYHKVNDKLEVGVNLAATAG---NSNTRFGIAAKYQVDPDACFSASVNNSS 236

Query: 236 KLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAI 272
            +G      + P   LT+S+ +D KA       GL  
Sbjct: 237 LVGLGYTQTLKPGIKLTLSALLDHKAGGHKLGLGLEF 273

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane. Length = 274

>gnl|CDD|132766 cd07305, Porin3_Tom40, Translocase of outer mitochondrial membrane 40 (Tom40)

 Score = 51.8 bits (125), Expect = 7e-08
 Identities = 62/300 (20%), Positives = 110/300 (36%), Gaps = 55/300 (18%)

Query: 5   PGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYK- 63
           PG F ++ ++ K++   D+    ++ ++        ++ +      L  G  +    Y+ 
Sbjct: 4   PGTFEELHREVKEVFPLDFFDGFRLDVNKGLSPHFQVSHS------LHLGSSSLTSSYQF 57

Query: 64  ---------NVLFDVKVDTESNILTTF--TLTEILPSTKAIASLKVPDYNSGKLEVQYFH 112
                           +D + N+       L + L  +K  A L     +S     Q   
Sbjct: 58  GATYVGDKQYPFLQGDIDNDGNLNARIIHQLGDRL-RSKLQAQL----QDSKFNMSQLEL 112

Query: 113 DH--ATFT-SAIALNQSPCIDVTATIG-------TPSIAFGAEAGYDTTSGN-------F 155
           D+    FT S    N    ++ T           TP +A G E  Y    GN        
Sbjct: 113 DYRGDDFTASLKLANPDI-LNETGIYVASYLQSVTPKLALGGELVYQRVPGNGISVLSYA 171

Query: 156 TKYTAGISVTKPDSCASIILGDKGDTIRASYVHHL-DNLKKSAAVGEITRRFSTNENTFT 214
            +YTAG  +      AS  LG +G  +  SY   L D L     V E+     T E+T T
Sbjct: 172 ARYTAGNWI------ASGQLGAQG-GLHLSYYRKLSDKL--QLGV-ELELNLRTRESTAT 221

Query: 215 VGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIAL 274
           +G  Y        +  ++++GK+ A+L+  +     L +S E++        +FG  + +
Sbjct: 222 LGYQYDFRQSR-FRGSIDSNGKVSAVLEKRLPLPLSLLLSGELNHVK--NDYKFGFGLTI 278

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery. Length = 279

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
cd07306	276	Porin3_VDAC Voltage-dependent anion channel of the	100.0
KOG3126	281	consensus Porin/voltage-dependent anion-selective	100.0
cd07303	274	Porin3 Eukaryotic porin family that forms channels	100.0
PF01459	273	Porin_3: Eukaryotic porin; InterPro: IPR001925 The	100.0
cd07305	279	Porin3_Tom40 Translocase of outer mitochondrial me	100.0
KOG3296	308	consensus Translocase of outer mitochondrial membr	99.95
TIGR00989	161	3a0801s07tom40 mitochondrial import receptor subun	99.49
cd07305	279	Porin3_Tom40 Translocase of outer mitochondrial me	99.3
cd07306	276	Porin3_VDAC Voltage-dependent anion channel of the	98.9
PF01459	273	Porin_3: Eukaryotic porin; InterPro: IPR001925 The	98.79
cd07303	274	Porin3 Eukaryotic porin family that forms channels	98.39
KOG3126	281	consensus Porin/voltage-dependent anion-selective	97.58
TIGR00989	161	3a0801s07tom40 mitochondrial import receptor subun	97.06
PRK10716	435	long-chain fatty acid outer membrane transporter;	93.87
KOG3296	308	consensus Translocase of outer mitochondrial membr	93.59
COG2067	440	FadL Long-chain fatty acid transport protein [Lipi	87.39
PF12519	260	DUF3722: Protein of unknown function (DUF3722) ; I	86.15
COG2067	440	FadL Long-chain fatty acid transport protein [Lipi	84.57
PF10082	381	DUF2320: Uncharacterized protein conserved in bact	82.45

>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane

Probab=100.00  E-value=7.6e-62  Score=430.90  Aligned_cols=268  Identities=39%  Similarity=0.590  Sum_probs=256.2

Q ss_pred             CCCcccccccccccccCCCCCc-ceEEEEEecCCCeEEEEEEEecC--CeeeeEEEEEEEEeCeEEEEEEcCCCceEEEE
Q 023824            5 PGLFADIGKKAKDLLTKDYNAD-QKISISTYSGAGVALTSTAVKKG--GLSAGDVAAQYKYKNVLFDVKVDTESNILTTF   81 (276)
Q Consensus         5 P~~f~dl~K~akdll~k~y~~~-~~l~~~t~~~~g~~~~~~~~~~~--~~~~g~~~~k~~~~~~~~~~~~~t~~~l~~~i   81 (276)
                      ||+|.||||.|||||+|||+++ |+|+|++++++|++|+++++.++  +++.|++|++|++++++++++|+|+|++.++|
T Consensus         1 p~~f~digK~akDll~k~y~~g~~kl~~~tk~~~gv~~~~~g~~~~~~~~~~g~~e~k~~~~~~t~~~k~~t~n~l~t~v   80 (276)
T cd07306           1 PPTYFDIGKSAKDLLTKGYNFGAWKLDVKTKTPNGVEFTSTGSKKPDTGKVSGSLEAKYKIKGLTLTQKWNTDNVLLTEI   80 (276)
T ss_pred             CCceeccccchhhcccCCCCCCCEEEEEEEECCCCeEEEEEEEeCCCCceEEEEEEEEEEeCCEEEEEEEeCCCceeEEE
Confidence            8999999999999999999965 99999999999999999998876  79999999999999999999999999999999


Q ss_pred             EEcc-ccCCceEEEEEEec---CCCceeEEEEEcccceeEEEEEecCCCCeEEEEEEeccCcceeeeEEEEEcCCCccee
Q 023824           82 TLTE-ILPSTKAIASLKVP---DYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTK  157 (276)
Q Consensus        82 ~~~~-~~~Glk~~~~~~~p---~~~~~k~~~~y~~~~~~~~~~~~l~~~p~~~~s~~~~~~~~~lG~e~~yd~~~~~~~~  157 (276)
                      ++++ ++||+|+.+++.+|   +.++++++++|+|+++++++++++..+|.++.++++++++|++|+|+.||..++++++
T Consensus        81 ~~~~~~~~glk~~~~~~~~p~~~~~s~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g~~~~~~G~e~~yd~~~~~~~~  160 (276)
T cd07306          81 TIEDLLAPGLKLTLDTTFPPNTGKKSGKLKAGYKHDPININADVDLNKGPLVGASAVLGYKGFLLGAEVVYDTAKSKFTK  160 (276)
T ss_pred             EECcccCCcceEEEEEEECCCCCCceEEEEEEEecCCeeEEEEecccCCCeeEEEEEecccceEEEEEEEEeccCCcEee
Confidence            9999 66999999999875   3589999999999999999999988789999999999999999999999998888999


Q ss_pred             eEEEEEEeCCCcEEEEEEcCCCCeEEEEEEEEeCCccceeEEEEEEEEccCCccEEEEEEEEeeCCCCeEEEEEcCCcee
Q 023824          158 YTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKL  237 (276)
Q Consensus       158 ~~~a~~y~~~~~~~~~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~~~ld~~~~~Kakv~s~g~v  237 (276)
                      |+++++|+.+||+++++++| ++.+++||||+++|++  ++|+|+.|+...+++++++|+||++++++++|||||++|.+
T Consensus       161 ~~~~~~Y~~~d~~~s~~l~~-~~~l~~S~~~kv~~~l--~~g~e~~~~~~~~~~~~~vg~~y~l~~~~~vkakv~~~g~v  237 (276)
T cd07306         161 YNFALGYTNGDFELSLKLNN-GKTLRGSYFHKVSPRL--AVGAKVTWYSGTNETTFAVGGQYALDPDALVKAKVNNDGQL  237 (276)
T ss_pred             EEEEEEEecCCeEEEEEECC-CCEEEEEEEEEcCCCe--EEEEEEEEecCCCCcEEEEEEEEEcCCCCEEEEEECCCceE
Confidence            99999999999999999999 8999999999999996  99999999998899999999999999899999999999999


Q ss_pred             EEEEEEEecCCeEEEEEEEeecccCC-CCCeeEEEEEEe
Q 023824          238 GALLQHEVIPKSLLTISSEVDTKALE-KTPRFGLAIALK  275 (276)
Q Consensus       238 ~~~~~~~l~~~~~l~ls~~~d~~~~~-~~~k~G~~l~~~  275 (276)
                      +++|+++|+|++++++|+++|+++++ +.||||++|+|+
T Consensus       238 ~~~y~~kl~~~v~~tls~~~d~~~~~~~~~K~G~~l~~~  276 (276)
T cd07306         238 GLSYQHKLRPGVTLTLSAGFDAKNLNQGGHKFGLSLSLK  276 (276)
T ss_pred             EEEEEEEcCCCcEEEEEEEeeccCcCCCCCeEEEEEEeC
Confidence            99999999999999999999999886 569999999986

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.

>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.2e-63  Score=427.19  Aligned_cols=272  Identities=31%  Similarity=0.452  Sum_probs=259.1

Q ss_pred             CCCCCCcccccccccccccCCCCCc-ceEEEEEecCCCeEEEEEEEecC--CeeeeEEEEEEEEe--CeEEEEEEcCCCc
Q 023824            2 SKGPGLFADIGKKAKDLLTKDYNAD-QKISISTYSGAGVALTSTAVKKG--GLSAGDVAAQYKYK--NVLFDVKVDTESN   76 (276)
Q Consensus         2 ~~~P~~f~dl~K~akdll~k~y~~~-~~l~~~t~~~~g~~~~~~~~~~~--~~~~g~~~~k~~~~--~~~~~~~~~t~~~   76 (276)
                      ||.||+|.||||.|||||+|||+++ |++++++++.+|++|++++..+.  +++.|++|++|+++  +++++++|+|+++
T Consensus         1 ~~~pp~y~digK~ArDl~~kgy~~g~~~~~~~t~t~~gv~ftssg~~~~~~~~v~gsle~k~~~~~~glt~t~kw~Tdn~   80 (281)
T KOG3126|consen    1 MMAPPTYADLGKLARDLFNKGYGFGLWKLDLKTKTESGVEFTSSGSVNTDTGKVKGSLETKYKDKDYGLTLTEKWNTDNT   80 (281)
T ss_pred             CCCCcchhhhhhHHHHHhhCCCCCCcEEEEEEeeccCcEEEEeeeccccceeeeeeeeEEEEeeccCceEEEEEeecCCc
Confidence            6999999999999999999999998 89999999999999999998774  69999999999998  7999999999999


Q ss_pred             eEEEEEEcc-ccCCceEEEEEEecC---CCceeEEEEEcccceeEEEEEecCCCCeEEEEEEeccCcceeeeEEEEEcCC
Q 023824           77 ILTTFTLTE-ILPSTKAIASLKVPD---YNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTS  152 (276)
Q Consensus        77 l~~~i~~~~-~~~Glk~~~~~~~p~---~~~~k~~~~y~~~~~~~~~~~~l~~~p~~~~s~~~~~~~~~lG~e~~yd~~~  152 (276)
                      |.++|++++ ++||+|+.+...+|+   .+++|++++|.|+.+++.+.+.+.++|.+.++++++.++|++|+|+.||.++
T Consensus        81 L~t~I~~~~~~~pglk~~~~~s~~p~~~~ks~Klk~~y~~~~~~~~~~~~~~~~P~i~~s~v~g~~g~l~G~~~~fDt~~  160 (281)
T KOG3126|consen   81 LGTEITVEDQLAPGLKLTLDSSFSPNTGKKSGKLKLSYARDHFNLGADDFLTANPLILGSLVLGHEGWLLGYETTFDTAS  160 (281)
T ss_pred             cceEEEEccccCCceEEEEEEeecCcccccceeeecccccccceeeeccccccCCeEEEEEEecccceEEEEeEEEeccC
Confidence            999999988 999999999999866   6899999999999999998654557999999999999999999999999999


Q ss_pred             CcceeeEEEEEEeCCCcEEEEEEcCCCCeEEEEEEEEeCCccceeEEEEEEEEccCCccEEEEEEEEeeCCCCeEEEEEc
Q 023824          153 GNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLN  232 (276)
Q Consensus       153 ~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~~~ld~~~~~Kakv~  232 (276)
                      +.+++|+++++|.++++++++.++| .+.+.+|+|||+++.+  +++++++|.....+++++||.+|.+|+.++|||||+
T Consensus       161 ~~~t~~n~~lgy~~~d~~l~~~~nn-~~~~~~s~yq~v~~~~--~~~~~~~~~~~~~~~~~~igt~Y~lD~~t~VkAKVn  237 (281)
T KOG3126|consen  161 GKLTKYNAALGYTTEDFTLHLNLNN-GTEFLASIYQRVNEKL--ETGANAEWIAGSSNTRFTIGTKYALDPDTSVKAKVN  237 (281)
T ss_pred             CcEeeEEEEEEeecCCcEEEEEecc-cchhhhhhhhhhcchh--eeeeeEEEeecCCccEEEEEEEeccCCCceeeeeec
Confidence            9999999999999999999999988 7999999999999996  999999999888899999999999999999999999


Q ss_pred             CCceeEEEEEEEecCCeEEEEEEEeecccCCCCCeeEEEEEEeC
Q 023824          233 NHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP  276 (276)
Q Consensus       233 s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~~~  276 (276)
                      ++|.++++|||+|+|++++++|+++|.+++++.||||++|+|+|
T Consensus       238 n~g~~gl~yq~~lrp~i~~t~s~~~d~~~~~~~hK~Glsl~~~~  281 (281)
T KOG3126|consen  238 NAGLAGLGYQQTLRPGIKVTLSAEFDGKALDAGHKFGLSLALKP  281 (281)
T ss_pred             CCceeeEEEEEecCCCcEEEEEEEEeccCCCCCcceeEEEeecC
Confidence            99999999999999999999999999999877799999999998

>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane

Probab=100.00  E-value=2.7e-52  Score=368.75  Aligned_cols=259  Identities=20%  Similarity=0.317  Sum_probs=238.6

Q ss_pred             CcccccccccccccCCCCCcceEEEEEecCCCeEEEEEEEec------CCeeeeEEEEEEEEe--CeEEEEEEcCCCceE
Q 023824            7 LFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKK------GGLSAGDVAAQYKYK--NVLFDVKVDTESNIL   78 (276)
Q Consensus         7 ~f~dl~K~akdll~k~y~~~~~l~~~t~~~~g~~~~~~~~~~------~~~~~g~~~~k~~~~--~~~~~~~~~t~~~l~   78 (276)
                      +|+||||+|||||++||.++++++|++..++  +|+++++..      +.++.+++++++.++  +++++++|++++++.
T Consensus         1 ~~~digk~ardll~~~~~~g~k~~v~~~~~~--~f~~s~~~~~~~~~~~~~~~~~~~~k~~~~~~~~t~~~~~~~dn~~~   78 (274)
T cd07303           1 TYAELGKSARDLFTKGYGGGIKLDVKTKSEL--EFTSSGSANTETIESTTKVGGSLETKYRWSPYGLTFTEKWNTDNTLG   78 (274)
T ss_pred             ChhHhhhhhHHhcccCCCCCEEEEEEecCCC--ccEEcccccccccCCCceEEEEEEEeeeecCCCeEEEEEEEcCCcce
Confidence            5999999999999999999999999998876  699998654      358999999998764  699999999999999


Q ss_pred             EEEEEcc-ccCCceEEEEEEe-cC--CCceeEEEEEcccceeEEEEEecCCCCeEEEEEEeccCcceeeeEEEEEcCCCc
Q 023824           79 TTFTLTE-ILPSTKAIASLKV-PD--YNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGN  154 (276)
Q Consensus        79 ~~i~~~~-~~~Glk~~~~~~~-p~--~~~~k~~~~y~~~~~~~~~~~~l~~~p~~~~s~~~~~~~~~lG~e~~yd~~~~~  154 (276)
                      +++++.+ +.||+|+++.+++ |.  .+.+|++.+|+++++++.+.++. .+|.+..+++.++++|++|+|+.||.++ +
T Consensus        79 ~~~~~~~~~~~glk~~~~~~~~~~~~~~~~q~~~~y~~~~~~~~l~~~~-~gp~v~~~~~~g~~~~~~G~e~~yd~~~-~  156 (274)
T cd07303          79 LEITVEDQLSRGLKSTFDSSFSPNTGKKNAKIKTGYKRINLGCDVDFDI-AGPLIRGALVLGYEGWLAGYQMVFETVS-R  156 (274)
T ss_pred             EEEEEecccCCCeEEEEEEEECCCCccEEEEEeccEEcCCeeEEEEeec-CCCEEEEEEEEeecceEEEEEEEEeccc-c
Confidence            9999999 8899999999987 43  36889999999999998888765 5899999999999999999999999876 5


Q ss_pred             ceeeEEEEEEeC--CCcEEEEEEcCCCCeEEEEEEEEeCCccceeEEEEEEEEccCCccEEEEEEEEeeCCCCeEEEEEc
Q 023824          155 FTKYTAGISVTK--PDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLN  232 (276)
Q Consensus       155 ~~~~~~a~~y~~--~~~~~~~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~~~ld~~~~~Kakv~  232 (276)
                      +++++++++|..  +||++++++++ ++.+++|||||++|++  ++|+|++|+...++++++||+||.+++++++|||||
T Consensus       157 ~~~~~~~~~y~~~y~d~~~s~~l~~-~~~l~~Sy~hkvs~~~--~~g~e~~~~~~~~e~~~~vG~~y~l~~~~~vkakid  233 (274)
T cd07303         157 VTQSNFAVGYKTDYNEFQAHTNVND-GTEFGGSIYHKVNDKL--EVGVNLAATAGNSNTRFGIAAKYQVDPDACFSASVN  233 (274)
T ss_pred             ccccceEEEEEccCCCeEEEEEEcC-CCeEEEEEEEEcCCce--EEEEEEEeeccCCccEEEEEEEEecCCCCEEEEEEC
Confidence            789999999999  89999999988 8999999999999996  999999999888999999999999998999999999


Q ss_pred             CCceeEEEEEEEecCCeEEEEEEEeecccCCCCCeeEEEEEE
Q 023824          233 NHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIAL  274 (276)
Q Consensus       233 s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~  274 (276)
                      ++|+|+++||++|+|++++++|+++|+++  +.||||+||+|
T Consensus       234 s~g~v~~~~~~~l~~~~~ltls~~~D~~~--~~~KfG~gl~~  273 (274)
T cd07303         234 NSSLVGLGYTQTLKPGIKLTLSALLDHKA--GGHKLGLGLEF  273 (274)
T ss_pred             CCceEEEEEEEEcCCCcEEEEEEEecCCC--CCeeEEEEEEe
Confidence            99999999999999999999999999964  67999999987

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.

>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]

Probab=100.00  E-value=6.5e-47  Score=334.58  Aligned_cols=260  Identities=33%  Similarity=0.465  Sum_probs=233.8

Q ss_pred             CCCCcccccccccccccCCCCCc-ceEEEEEecCCCeEEEEEEEec--CC-eeeeEEEEEEEEeCeEEEEEEcCCCceEE
Q 023824            4 GPGLFADIGKKAKDLLTKDYNAD-QKISISTYSGAGVALTSTAVKK--GG-LSAGDVAAQYKYKNVLFDVKVDTESNILT   79 (276)
Q Consensus         4 ~P~~f~dl~K~akdll~k~y~~~-~~l~~~t~~~~g~~~~~~~~~~--~~-~~~g~~~~k~~~~~~~~~~~~~t~~~l~~   79 (276)
                      |||.|+||+|.|||||+++|+++ ++++|++++++++.|++++...  .+ .+.+.++++|.  +..++++|+.++.+.+
T Consensus         1 nP~~f~dl~k~akdll~~~y~f~g~kl~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~   78 (273)
T PF01459_consen    1 NPGSFEDLGKEAKDLLPKDYNFDGFKLDVKKKTPNGPNFTVSHSFSLGTSVPSSYSFGAKYK--GPKLTVKGDTDNDGNL   78 (273)
T ss_dssp             -S-SCCCCCHCCHHHHCTTSSTTEEEEEEEEE-TTCEEEEEEEEEETTTT--EEEEEEEEEE--CEEEEEEEETTTEEEE
T ss_pred             CCCChHHHhHHHHHhccCCCCCcCEEEEEEecccCcceEEEEEEEecCCCCccceEEEEEEe--CceeeEEEEeCCcccE
Confidence            79999999999999999999887 9999999999999999999766  45 79999999998  6788899999999999


Q ss_pred             EEEEcc-ccCCceEEEEEEec-CC--CceeEEEEEcccceeEEEEEecCCCCeEEEEEEeccC-cceeeeEEEEEcCCCc
Q 023824           80 TFTLTE-ILPSTKAIASLKVP-DY--NSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTP-SIAFGAEAGYDTTSGN  154 (276)
Q Consensus        80 ~i~~~~-~~~Glk~~~~~~~p-~~--~~~k~~~~y~~~~~~~~~~~~l~~~p~~~~s~~~~~~-~~~lG~e~~yd~~~~~  154 (276)
                      ++++.+ +.||+++++.++++ +.  +..+++++|+++++++.++++....|.+.++.+++.. +|++|+|+.||...+.
T Consensus        79 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~lG~e~~~~~~~~~  158 (273)
T PF01459_consen   79 EASVRNKLSPGLKLKLSAQLSPGSGKKSAQLEADYKGDDFNATFKVDNDNNPIFNASYVQSVTPNLALGAEATYDLSSGK  158 (273)
T ss_dssp             EEEEESSTTTTEEEEEEEEE-TTTS-EEEEEEEEEEETTEEEEEEEEESTS-EEEEEEEEEET-TEEEEEEEEEETTTTC
T ss_pred             EEEEecccCcceEEEEEEEEeecCCceeeEEEEEEecCCEEEEEEEcccCCCcEEEEEEEeccccEEEEEEEEEecccCC
Confidence            999999 99999999999864 42  6999999999999999999987558999999999765 9999999999999888


Q ss_pred             ceeeEEEEEEeCC----CcEEEEEEcCCCCeEEEEEEEEeCCccceeEEEEEEEEccCCccEEEEEEEEeeCCCCeEEEE
Q 023824          155 FTKYTAGISVTKP----DSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAK  230 (276)
Q Consensus       155 ~~~~~~a~~y~~~----~~~~~~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~~~ld~~~~~Kak  230 (276)
                      +.+|+++++|..+    ++++++++.++.+.+++||||++++++  ++|+|++++...++++++||++|.+++.++||||
T Consensus       159 ~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~sy~~k~~~~~--~~g~e~~~~~~~~~~~~~vG~~~~l~~~~~vk~k  236 (273)
T PF01459_consen  159 SSKYNAGLSYAARYTHPDYTASATLSNNFGTLTASYFQKVNDKL--QLGAELTYNLSSRESTFTVGYQYKLDDSSTVKAK  236 (273)
T ss_dssp             EEEEEEEEEEEET----TEEEEEEE-ETTTEEEEEEEEESSTTE--EEEEEEEEETTCCEEEEEEEEEEEECTTEEEEEE
T ss_pred             cCcceEEEEEeccccceeEEEEEEEcCCCCEEEEEEEEEeccce--eeeeeeeecccCCCceEEEEEEEEcCcccEEEEE
Confidence            9999999999888    999999996558999999999999996  9999999999999999999999999877799999


Q ss_pred             EcCCceeEEEEEEEecCCeEEEEEEEeecccCCCCCeeE
Q 023824          231 LNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFG  269 (276)
Q Consensus       231 v~s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G  269 (276)
                      ||++|.|+++||++|+|++++++|+++|+++.  .||||
T Consensus       237 vds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~--~~KfG  273 (273)
T PF01459_consen  237 VDSNGRVSASYEQKLNPGVTLTLSAELDHKNN--NHKFG  273 (273)
T ss_dssp             EETTSEEEEEEEEEECTTEEEEEEEEECTT-C---EEEE
T ss_pred             EcCCCEEEEEEEEecCCCcEEEEEEEEccCCC--CCCcC
Confidence            99999999999999999999999999999774  69998

The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.

>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40)

Probab=100.00  E-value=1.7e-41  Score=301.15  Aligned_cols=261  Identities=19%  Similarity=0.293  Sum_probs=228.5

Q ss_pred             CCCCCcccccccccccccCCCCCcceEEEEEecCCCeEEEEEEEec--C-C-eeeeEEEEEEEEeC--eEEEEEEcCCCc
Q 023824            3 KGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKK--G-G-LSAGDVAAQYKYKN--VLFDVKVDTESN   76 (276)
Q Consensus         3 ~~P~~f~dl~K~akdll~k~y~~~~~l~~~t~~~~g~~~~~~~~~~--~-~-~~~g~~~~k~~~~~--~~~~~~~~t~~~   76 (276)
                      .+|++|+||+|+|||++..+|..|.+++++..-.  ..|.++++-.  . + ...-.+.+.|..+.  ..+..++|++++
T Consensus         2 ~nPg~~e~l~~e~k~~~~~~~~~G~r~~~~k~ls--~~f~~shs~~lg~~~~~~~y~f~a~y~~~~~~~~~~~~id~~g~   79 (279)
T cd07305           2 PNPGTFEELHREVKEVFPLDFFDGFRLDVNKGLS--PHFQVSHSLHLGSSSLTSSYQFGATYVGDKQYPFLQGDIDNDGN   79 (279)
T ss_pred             cCCccHHHHHHHHHHhcCccccccEEEEEccccC--cCeeEEEEEEECCCCCCCCcEeeeEEecCCCcEEEEEEeCCCCc
Confidence            5899999999999999999998789999988544  4566666433  2 1 23456777787777  899999999999


Q ss_pred             eEEEEEEccccCCceEEEEEEecC--CCceeEEEEEcccceeEEEEEecCCCCe-EEEEEEec-------cCcceeeeEE
Q 023824           77 ILTTFTLTEILPSTKAIASLKVPD--YNSGKLEVQYFHDHATFTSAIALNQSPC-IDVTATIG-------TPSIAFGAEA  146 (276)
Q Consensus        77 l~~~i~~~~~~~Glk~~~~~~~p~--~~~~k~~~~y~~~~~~~~~~~~l~~~p~-~~~s~~~~-------~~~~~lG~e~  146 (276)
                      +.+++... +.+.++.++.+++++  ....+++.+|+++++++.+.+   .+|. ++.+++++       +|+|++|+|+
T Consensus        80 l~~~~~~~-~~~~~~~k~~~~~~~~~~~~~q~~~dy~g~d~t~~l~~---~n~~~~~~sg~~~~~ylq~vt~~l~lG~E~  155 (279)
T cd07305          80 LNARIIHQ-LGDRLRSKLQAQLQDSKFNMSQLELDYRGDDFTASLKL---ANPDILNETGIYVASYLQSVTPKLALGGEL  155 (279)
T ss_pred             eeEEEEec-cCcceEEEEEEEecCCCceeEEEEEEEcCCceEEEEEE---eCCCcccccEEEEEEEEEEccCcEEEEEEE
Confidence            99999866 999999999998866  357899999999999988776   3563 56666665       8999999999


Q ss_pred             EEEc-CCCcceeeEEEEEEeCCCcEEEEEEcCCCCeEEEEEEEEeCCccceeEEEEEEEEccCCccEEEEEEEEeeCCCC
Q 023824          147 GYDT-TSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLT  225 (276)
Q Consensus       147 ~yd~-~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~~~ld~~~  225 (276)
                      .|+. +.++++.++++++|+.++|++++++.+ .+.+.+|||||++|++  ++|+|++|+...+++.+++|++|.++ ++
T Consensus       156 ~~~~~~~~~~~~~~~~~rY~~~d~~~s~~l~~-~~~l~asY~~kvs~~l--~lG~el~~~~~~~es~~tvg~~y~~~-~~  231 (279)
T cd07305         156 VYQRVPGNGISVLSYAARYTAGNWIASGQLGA-QGGLHLSYYRKLSDKL--QLGVELELNLRTRESTATLGYQYDFR-QS  231 (279)
T ss_pred             EEEEcCCCCceeEEEEEEEccCCEEEEEEEcC-CCeEEEEEEEEcccce--EeeeeeeecccCCceeEEEEEEEEcC-CC
Confidence            9996 577899999999999999999999999 4899999999999996  99999999999999999999999996 99


Q ss_pred             eEEEEEcCCceeEEEEEEEecCCeEEEEEEEeecccCCCCCeeEEEEEEe
Q 023824          226 VVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALK  275 (276)
Q Consensus       226 ~~Kakv~s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~~  275 (276)
                      ++||+||++|+|+++||++|+|++++++|+++|+++  +.+|||+||.|.
T Consensus       232 ~~k~~ids~g~v~~~~e~~l~~~~~l~ls~~~d~~~--~~~kfG~gl~i~  279 (279)
T cd07305         232 RFRGSIDSNGKVSAVLEKRLPLPLSLLLSGELNHVK--NDYKFGFGLTIG  279 (279)
T ss_pred             EEEEEEcCCCEEEEEEEEecCCCeEEEEEEEEcccC--CcceEEEEEEeC
Confidence            999999999999999999999999999999999964  679999999874

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.

>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4.5e-29  Score=218.14  Aligned_cols=256  Identities=14%  Similarity=0.211  Sum_probs=202.3

Q ss_pred             CCCCCcccccccccccc-----------cCCC----CCcceEEEEEecCCCeEEEEEEEecCCeeeeEEEEEEEEeCeEE
Q 023824            3 KGPGLFADIGKKAKDLL-----------TKDY----NADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLF   67 (276)
Q Consensus         3 ~~P~~f~dl~K~akdll-----------~k~y----~~~~~l~~~t~~~~g~~~~~~~~~~~~~~~g~~~~k~~~~~~~~   67 (276)
                      .||++|++|+++|+ ++           +|+.    ..++.+.++...+.|+.|.+++       .+..+..+......+
T Consensus        28 ~Npgt~e~L~~~~~-~~p~~~~g~kl~v~k~Ls~~fqvs~t~~ls~~~~sg~~fg~ty-------~~~~q~~~~~~~~il   99 (308)
T KOG3296|consen   28 LNPGTVEELHSEAS-VDPTLSEGVKLGVNKGLSNHFQVSPTFVLSHIAASGYRFGPTY-------VYTFQASPTEAFLIL   99 (308)
T ss_pred             CCcHHHHHhhhhhc-cCceeecceEeeecccccCceEeccceecccCccccceeccce-------eeeeccccCCCcceE
Confidence            48999999999996 43           2332    2346777777777788887776       344444444444677


Q ss_pred             EEEEcCCCceEEEEEEccccCCceEEEEEEecCCCceeEEEEEcccceeEEEEEecC-CCCeEEEEEEe-------ccCc
Q 023824           68 DVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALN-QSPCIDVTATI-------GTPS  139 (276)
Q Consensus        68 ~~~~~t~~~l~~~i~~~~~~~Glk~~~~~~~p~~~~~k~~~~y~~~~~~~~~~~~l~-~~p~~~~s~~~-------~~~~  139 (276)
                      -..+|++|.+.+++..+ +.++++.++..++++.+  .++-+|..+++....+..+. .+|.+..++++       .++.
T Consensus       100 ~G~vD~~Gslna~l~~~-l~~~Lr~K~~~q~~~~k--~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~lqsvT~~  176 (308)
T KOG3296|consen  100 RGDVDNDGSLNARLIHQ-LTDNLRSKVALQIQQSK--EVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASYLQSVTPR  176 (308)
T ss_pred             EEecCCCCchhheeecc-cchhhHHHHHHHhcchh--hhccccccceecccccccccccCcccccchHHHHHHHhhhccc
Confidence            78899999999998654 88898887766665522  45555555555554444332 47776566654       5899


Q ss_pred             ceeeeEEEEEc-CCCcceeeEEEEEEeCCCcEEEEEEcCCCCeEEEEEEEEeCCccceeEEEEEEEEccCCccEEEEEEE
Q 023824          140 IAFGAEAGYDT-TSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGS  218 (276)
Q Consensus       140 ~~lG~e~~yd~-~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~  218 (276)
                      |++|+|+.|.. +....+..++++||...+|++++++..  ..++++||||..+++  +.|+|+.++..-+++..+++++
T Consensus       177 LsLG~El~~~~~~~~~~s~ls~a~RY~~~~~~~~~t~g~--~g~~~~y~~r~~~~~--~~~ve~~~~~~~~~~~~t~a~~  252 (308)
T KOG3296|consen  177 LSLGGELLYQRRPGPEESGLSYAGRYEHSNWDATVTLGQ--QGLTGTYYQRAVEKL--QMGVEFETNTRLQSTDVTAAYG  252 (308)
T ss_pred             ccccceeEeccCCCccccceeeeeeeeecceeeEEeccc--ccceehhhhhhhhhh--ccceeEeeecccCCcceEEEEE
Confidence            99999999987 445667899999999999999999976  488899999999996  9999999998888999999999


Q ss_pred             Eee-CCCCeEEEEEcCCceeEEEEEEEecCCeEEEEEEEeecccCCCCCeeEEEEEEe
Q 023824          219 YAV-DHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALK  275 (276)
Q Consensus       219 ~~l-d~~~~~Kakv~s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~~  275 (276)
                      |++ .+++.+|++||++|.|++.+|++|.+.+++.+|+++||.+  ..+|||+||++.
T Consensus       253 ~~l~~~~s~~rg~vDSn~~v~~~lek~L~l~l~~~ls~~lnh~k--~~~~~G~gl~~~  308 (308)
T KOG3296|consen  253 YDLPTAQSVFRGSVDSNWSVGAVLEKKLPLPLTLALSAELNHVK--NDFKFGFGLTIG  308 (308)
T ss_pred             eeccCccceEEEEeccCceehhhhHhhcCCCceeeeeeeecccc--cccccceeEEeC
Confidence            998 4789999999999999999999997789999999999955  569999999873

>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40

Probab=99.49  E-value=1.3e-12  Score=104.74  Aligned_cols=143  Identities=14%  Similarity=0.207  Sum_probs=108.5

Q ss_pred             CCCCCcccccccc-cccccCCCCC-cceEEEEEecCCCeEEEEEEEecCCe--eee-EEEEEEEEeCeEEEEEEcCCCce
Q 023824            3 KGPGLFADIGKKA-KDLLTKDYNA-DQKISISTYSGAGVALTSTAVKKGGL--SAG-DVAAQYKYKNVLFDVKVDTESNI   77 (276)
Q Consensus         3 ~~P~~f~dl~K~a-kdll~k~y~~-~~~l~~~t~~~~g~~~~~~~~~~~~~--~~g-~~~~k~~~~~~~~~~~~~t~~~l   77 (276)
                      .||++|++|+|+| ||++-+.|.| +.+++++..-.-+..|.++++-.-|.  +.+ ...+.|....+.+..++|++|.+
T Consensus         2 ~nPGt~E~l~re~~rdv~l~~~~FeG~R~d~~K~~~ls~~FqvSHs~~mgs~~~p~Y~FgA~y~~~~~~l~G~id~dG~l   81 (161)
T TIGR00989         2 SNPGTIENLAKEVSRDTLLSNYMFTGLRADVTKAFSLAPLFQVSHQFAMGSQRLPPYAFSALFGTNQLFAQGNLDNDGAV   81 (161)
T ss_pred             cCCccHHHHHHHHhhhcccCccccccEEEEEecccccCCceeEEEEEEeCCCCCCCceeeeEecCCcEEEEEEeCCCCCE
Confidence            5899999999999 9999999988 48999987632345788888654221  111 12223332346788999999999


Q ss_pred             EEEEEEccccCCceEEEEEEecC--CCceeEEEEEcccceeEEEEEecCCCCeE-EE--EEEe-------ccCcceeeeE
Q 023824           78 LTTFTLTEILPSTKAIASLKVPD--YNSGKLEVQYFHDHATFTSAIALNQSPCI-DV--TATI-------GTPSIAFGAE  145 (276)
Q Consensus        78 ~~~i~~~~~~~Glk~~~~~~~p~--~~~~k~~~~y~~~~~~~~~~~~l~~~p~~-~~--s~~~-------~~~~~~lG~e  145 (276)
                      .+++..+ +.+.++.++.+++.+  ....+++.+|+++++++.+++.   +|.+ +.  ++++       .+|+++||+|
T Consensus        82 ~ar~~~~-~~~~~~~K~~~Q~~~~~~~~~Q~e~DY~G~Dft~~lk~~---Np~~~~~~~sGi~v~sylQsVTp~LaLG~E  157 (161)
T TIGR00989        82 STRLNYR-WGDRTISKVQFQISGGQPDMCQFEHDHLGDDFSASLKAI---NPSFLEKGLTGIFVGSYLQSVTPRLGLGLE  157 (161)
T ss_pred             EEEEEEe-eCcceeEEEEEEecCCCCceEEEEEEecCCeEEEEEEEc---CcccccccceEEEEEeeeehhCcceeeeee
Confidence            9999775 999999999998643  3688999999999999998883   6663 32  4443       5899999999


Q ss_pred             EEEE
Q 023824          146 AGYD  149 (276)
Q Consensus       146 ~~yd  149 (276)
                      +.|+
T Consensus       158 ~~yq  161 (161)
T TIGR00989       158 ALWQ  161 (161)
T ss_pred             eEeC
Confidence            9984

translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.

>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40)

Probab=99.30  E-value=5.4e-09  Score=92.96  Aligned_cols=182  Identities=15%  Similarity=0.174  Sum_probs=129.7

Q ss_pred             ccCCceEEEEEEecC---CCceeEEEEEcccc--eeEEEEEecCCCCeEEEEEEec-cCcceeeeEEEEEcCCCcceeeE
Q 023824           86 ILPSTKAIASLKVPD---YNSGKLEVQYFHDH--ATFTSAIALNQSPCIDVTATIG-TPSIAFGAEAGYDTTSGNFTKYT  159 (276)
Q Consensus        86 ~~~Glk~~~~~~~p~---~~~~k~~~~y~~~~--~~~~~~~~l~~~p~~~~s~~~~-~~~~~lG~e~~yd~~~~~~~~~~  159 (276)
                      +.|.+.+.=...+..   ....++.+.|..+.  ..+..+++  ..-.+++..... .+++..-.  ..+........+.
T Consensus        34 ls~~f~~shs~~lg~~~~~~~y~f~a~y~~~~~~~~~~~~id--~~g~l~~~~~~~~~~~~~~k~--~~~~~~~~~~~~q  109 (279)
T cd07305          34 LSPHFQVSHSLHLGSSSLTSSYQFGATYVGDKQYPFLQGDID--NDGNLNARIIHQLGDRLRSKL--QAQLQDSKFNMSQ  109 (279)
T ss_pred             cCcCeeEEEEEEECCCCCCCCcEeeeEEecCCCcEEEEEEeC--CCCceeEEEEeccCcceEEEE--EEEecCCCceeEE
Confidence            556655543333321   24678899999988  77777775  222344444332 23444444  4444444667899


Q ss_pred             EEEEEeCCCcEEEEEEcCC-----CCeEEEEEEEEeCCccceeEEEEEEEE--ccCCccEEEEEEEEeeCCCCeEEEEEc
Q 023824          160 AGISVTKPDSCASIILGDK-----GDTIRASYVHHLDNLKKSAAVGEITRR--FSTNENTFTVGGSYAVDHLTVVKAKLN  232 (276)
Q Consensus       160 ~a~~y~~~~~~~~~~~~~~-----~~~~~~Sy~~kv~~~~~~~~g~e~~~~--~~~~~~~~~vG~~~~ld~~~~~Kakv~  232 (276)
                      +.+.|..++|++++++.+.     ...+.++|.|.+.|++  ++|+|+.|.  ...+.+.+++|++|.- ++....+.++
T Consensus       110 ~~~dy~g~d~t~~l~~~n~~~~~~sg~~~~~ylq~vt~~l--~lG~E~~~~~~~~~~~~~~~~~~rY~~-~d~~~s~~l~  186 (279)
T cd07305         110 LELDYRGDDFTASLKLANPDILNETGIYVASYLQSVTPKL--ALGGELVYQRVPGNGISVLSYAARYTA-GNWIASGQLG  186 (279)
T ss_pred             EEEEEcCCceEEEEEEeCCCcccccEEEEEEEEEEccCcE--EEEEEEEEEEcCCCCceeEEEEEEEcc-CCEEEEEEEc
Confidence            9999999999999997653     2788999999999997  999999998  5678899999999998 5888999999


Q ss_pred             CCceeEEEEEEEecCCeEEEEEEEeecccCCCCCeeEEEEEE
Q 023824          233 NHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIAL  274 (276)
Q Consensus       233 s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~  274 (276)
                      +.+.+.++|-|+++|++.+..-.+.+...-+....+|....+
T Consensus       187 ~~~~l~asY~~kvs~~l~lG~el~~~~~~~es~~tvg~~y~~  228 (279)
T cd07305         187 AQGGLHLSYYRKLSDKLQLGVELELNLRTRESTATLGYQYDF  228 (279)
T ss_pred             CCCeEEEEEEEEcccceEeeeeeeecccCCceeEEEEEEEEc
Confidence            999999999999999766665555554321111455554443

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.

>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane

Probab=98.90  E-value=3.5e-06  Score=74.82  Aligned_cols=175  Identities=14%  Similarity=0.192  Sum_probs=117.3

Q ss_pred             CCeEEEEEEEec--CCeeeeEEEEEEEEeCeEEEEEEcCC--CceEEEEEEccccCCceEEEEEEe--cC--CCceeEEE
Q 023824           37 AGVALTSTAVKK--GGLSAGDVAAQYKYKNVLFDVKVDTE--SNILTTFTLTEILPSTKAIASLKV--PD--YNSGKLEV  108 (276)
Q Consensus        37 ~g~~~~~~~~~~--~~~~~g~~~~k~~~~~~~~~~~~~t~--~~l~~~i~~~~~~~Glk~~~~~~~--p~--~~~~k~~~  108 (276)
                      .|+.......-.  .+.-.|.++..|..+.+.++..++-.  -.+...+.+.  .+++-+-.++..  ..  .....+.+
T Consensus        88 ~glk~~~~~~~~p~~~~~s~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g--~~~~~~G~e~~yd~~~~~~~~~~~~~  165 (276)
T cd07306          88 PGLKLTLDTTFPPNTGKKSGKLKAGYKHDPININADVDLNKGPLVGASAVLG--YKGFLLGAEVVYDTAKSKFTKYNFAL  165 (276)
T ss_pred             CcceEEEEEEECCCCCCceEEEEEEEecCCeeEEEEecccCCCeeEEEEEec--ccceEEEEEEEEeccCCcEeeEEEEE
Confidence            455555444323  35678888888887755555554432  2244444443  366665555543  21  24667889


Q ss_pred             EEcccceeEEEEEecCCCCeEEEEEEe-ccCcceeeeEEEEEcCCCcceeeEEEEEEeCC-CcEEEEEEcCCCCeEEEEE
Q 023824          109 QYFHDHATFTSAIALNQSPCIDVTATI-GTPSIAFGAEAGYDTTSGNFTKYTAGISVTKP-DSCASIILGDKGDTIRASY  186 (276)
Q Consensus       109 ~y~~~~~~~~~~~~l~~~p~~~~s~~~-~~~~~~lG~e~~yd~~~~~~~~~~~a~~y~~~-~~~~~~~~~~~~~~~~~Sy  186 (276)
                      +|.++++.+.+.+.  +...+.+|... ..+++.+|+|+.|+...+. +.+++|++|.-+ ++.+.+++++ ...+.++|
T Consensus       166 ~Y~~~d~~~s~~l~--~~~~l~~S~~~kv~~~l~~g~e~~~~~~~~~-~~~~vg~~y~l~~~~~vkakv~~-~g~v~~~y  241 (276)
T cd07306         166 GYTNGDFELSLKLN--NGKTLRGSYFHKVSPRLAVGAKVTWYSGTNE-TTFAVGGQYALDPDALVKAKVNN-DGQLGLSY  241 (276)
T ss_pred             EEecCCeEEEEEEC--CCCEEEEEEEEEcCCCeEEEEEEEEecCCCC-cEEEEEEEEEcCCCCEEEEEECC-CceEEEEE
Confidence            99999999888774  34557778766 4578999999999975544 689999999865 5999999988 58999999


Q ss_pred             EEEeCCccceeEEEEEEEE-ccCCccEEEEEE
Q 023824          187 VHHLDNLKKSAAVGEITRR-FSTNENTFTVGG  217 (276)
Q Consensus       187 ~~kv~~~~~~~~g~e~~~~-~~~~~~~~~vG~  217 (276)
                      .|+++|++.+.+++++.+. +..+...+.+|.
T Consensus       242 ~~kl~~~v~~tls~~~d~~~~~~~~~K~G~~l  273 (276)
T cd07306         242 QHKLRPGVTLTLSAGFDAKNLNQGGHKFGLSL  273 (276)
T ss_pred             EEEcCCCcEEEEEEEeeccCcCCCCCeEEEEE
Confidence            9999999744555555542 122444454444

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.

>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]

Probab=98.79  E-value=1.1e-05  Score=71.09  Aligned_cols=164  Identities=20%  Similarity=0.158  Sum_probs=112.0

Q ss_pred             ceeEEEEEcccceeEEEEEecCCCCeEEEEEEe---ccCcceeeeEEEEEcCCCcceeeEEEEEEeCCCcEEEEEEcC-C
Q 023824          103 SGKLEVQYFHDHATFTSAIALNQSPCIDVTATI---GTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGD-K  178 (276)
Q Consensus       103 ~~k~~~~y~~~~~~~~~~~~l~~~p~~~~s~~~---~~~~~~lG~e~~yd~~~~~~~~~~~a~~y~~~~~~~~~~~~~-~  178 (276)
                      ..+++..|......+..++    .+.....+-+   ..+++.+=.++.+...+ ....+.+.+.|..+++.+.+.+.+ .
T Consensus        54 ~~~~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~y~~~~~~~~~~~~~~~  128 (273)
T PF01459_consen   54 SYSFGAKYKGPKLTVKGDT----DNDGNLEASVRNKLSPGLKLKLSAQLSPGS-GKKSAQLEADYKGDDFNATFKVDNDN  128 (273)
T ss_dssp             EEEEEEEEECEEEEEEEET----TTEEEEEEEEESSTTTTEEEEEEEEE-TTT-S-EEEEEEEEEEETTEEEEEEEEEST
T ss_pred             ceEEEEEEeCceeeEEEEe----CCcccEEEEEecccCcceEEEEEEEEeecC-CceeeEEEEEEecCCEEEEEEEcccC
Confidence            5667777774433333322    4554444443   35776666665554322 236799999999999999999874 2


Q ss_pred             CCeEEEEEEEEeCCccceeEEEEEEEEccCCccE-----EEEEEEEeeCCCCeEEEEE-cCCceeEEEEEEEecCCeEEE
Q 023824          179 GDTIRASYVHHLDNLKKSAAVGEITRRFSTNENT-----FTVGGSYAVDHLTVVKAKL-NNHGKLGALLQHEVIPKSLLT  252 (276)
Q Consensus       179 ~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~-----~~vG~~~~ld~~~~~Kakv-~s~g~v~~~~~~~l~~~~~l~  252 (276)
                      ...+.+||.+.+.|++  .+|+|+.|+...++..     +.++.+|.- ++.++-+.+ ++.+.+.++|-|++++.+.+.
T Consensus       129 ~~~~~~s~~~~v~~~~--~lG~e~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~~~~~~~~l~~sy~~k~~~~~~~g  205 (273)
T PF01459_consen  129 NPIFNASYVQSVTPNL--ALGAEATYDLSSGKSSKYNAGLSYAARYTH-PDYTASATLSNNFGTLTASYFQKVNDKLQLG  205 (273)
T ss_dssp             S-EEEEEEEEEET-TE--EEEEEEEEETTTTCEEEEEEEEEEEET-----TEEEEEEE-ETTTEEEEEEEEESSTTEEEE
T ss_pred             CCcEEEEEEEeccccE--EEEEEEEEecccCCcCcceEEEEEeccccc-eeEEEEEEEcCCCCEEEEEEEEEeccceeee
Confidence            4889999999999997  9999999998776655     444454443 699999999 689999999999999999998


Q ss_pred             EEEEeecccCCCCCeeEEEEEE
Q 023824          253 ISSEVDTKALEKTPRFGLAIAL  274 (276)
Q Consensus       253 ls~~~d~~~~~~~~k~G~~l~~  274 (276)
                      .-.+.+...-+....+|+...+
T Consensus       206 ~e~~~~~~~~~~~~~vG~~~~l  227 (273)
T PF01459_consen  206 AELTYNLSSRESTFTVGYQYKL  227 (273)
T ss_dssp             EEEEEETTCCEEEEEEEEEEEE
T ss_pred             eeeeecccCCCceEEEEEEEEc
Confidence            8888887431111344444444

The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.

>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane

Probab=98.39  E-value=0.00039  Score=61.69  Aligned_cols=129  Identities=10%  Similarity=0.081  Sum_probs=94.0

Q ss_pred             cCcceeeeEEEEEcCCCcceeeEEEEEEeCCCcEEEEEEcCCCCeEEEEEEEEeCCccceeEEEEEEEEccCC--ccEEE
Q 023824          137 TPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTN--ENTFT  214 (276)
Q Consensus       137 ~~~~~lG~e~~yd~~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~--~~~~~  214 (276)
                      .+++.+=.++.++..+ ......+-..|..+++.+.+.+.+ ..-+-.++.+-..++|  .+|+|+.|+...+  +..+.
T Consensus        88 ~~glk~~~~~~~~~~~-~~~~~q~~~~y~~~~~~~~l~~~~-~gp~v~~~~~~g~~~~--~~G~e~~yd~~~~~~~~~~~  163 (274)
T cd07303          88 SRGLKSTFDSSFSPNT-GKKNAKIKTGYKRINLGCDVDFDI-AGPLIRGALVLGYEGW--LAGYQMVFETVSRVTQSNFA  163 (274)
T ss_pred             CCCeEEEEEEEECCCC-ccEEEEEeccEEcCCeeEEEEeec-CCCEEEEEEEEeecce--EEEEEEEEeccccccccceE
Confidence            5777777787776433 345678888999999999999976 3566678889999997  9999999987443  33444


Q ss_pred             EEEEEeeCCCCeEEEEEcCCceeEEEEEEEecCCeEEEEEEEeecccCCCCCeeEEEE
Q 023824          215 VGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAI  272 (276)
Q Consensus       215 vG~~~~ld~~~~~Kakv~s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l  272 (276)
                      +|+.-.. ++...-+++++-+.+.++|-|+++|++.+..-.+.+.+.  ....+.+|.
T Consensus       164 ~~y~~~y-~d~~~s~~l~~~~~l~~Sy~hkvs~~~~~g~e~~~~~~~--~e~~~~vG~  218 (274)
T cd07303         164 VGYKTDY-NEFQAHTNVNDGTEFGGSIYHKVNDKLEVGVNLAATAGN--SNTRFGIAA  218 (274)
T ss_pred             EEEEccC-CCeEEEEEEcCCCeEEEEEEEEcCCceEEEEEEEeeccC--CccEEEEEE
Confidence            4433222 567778889888999999999999988877777777532  234444443

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.

>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]

Probab=97.58  E-value=0.025  Score=49.98  Aligned_cols=152  Identities=15%  Similarity=0.173  Sum_probs=93.3

Q ss_pred             CeeeeEEEEEEEEeCeEEEE-EEcCCCc-eEEEEEE--ccccCCceEEEEEEecCCCceeEEEEEcccceeEEEEEecCC
Q 023824           50 GLSAGDVAAQYKYKNVLFDV-KVDTESN-ILTTFTL--TEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQ  125 (276)
Q Consensus        50 ~~~~g~~~~k~~~~~~~~~~-~~~t~~~-l~~~i~~--~~~~~Glk~~~~~~~p~~~~~k~~~~y~~~~~~~~~~~~l~~  125 (276)
                      +..+|.++..|.++..++.. .....+. +.....+  ++++-|..+.+++.--.-....+.+.|..+++.+.+.++  +
T Consensus       108 ~~ks~Klk~~y~~~~~~~~~~~~~~~~P~i~~s~v~g~~g~l~G~~~~fDt~~~~~t~~n~~lgy~~~d~~l~~~~n--n  185 (281)
T KOG3126|consen  108 GKKSGKLKLSYARDHFNLGADDFLTANPLILGSLVLGHEGWLLGYETTFDTASGKLTKYNAALGYTTEDFTLHLNLN--N  185 (281)
T ss_pred             cccceeeecccccccceeeeccccccCCeEEEEEEecccceEEEEeEEEeccCCcEeeEEEEEEeecCCcEEEEEec--c
Confidence            45566666666654333332 1112222 2222222  223333333333321112455678889999988887763  3


Q ss_pred             CCeEEEEEEec-cCcceeeeEEEEEcCCCcceeeEEEEEEe-CCCcEEEEEEcCCCCeEEEEEEEEeCCccceeEEEEEE
Q 023824          126 SPCIDVTATIG-TPSIAFGAEAGYDTTSGNFTKYTAGISVT-KPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEIT  203 (276)
Q Consensus       126 ~p~~~~s~~~~-~~~~~lG~e~~yd~~~~~~~~~~~a~~y~-~~~~~~~~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~  203 (276)
                      .-.+..|.-.. ...+..|.++.|..... -+.+++|.+|. .++..+-+++++ .+.+.+.|-|++.|...+.+++++.
T Consensus       186 ~~~~~~s~yq~v~~~~~~~~~~~~~~~~~-~~~~~igt~Y~lD~~t~VkAKVnn-~g~~gl~yq~~lrp~i~~t~s~~~d  263 (281)
T KOG3126|consen  186 GTEFLASIYQRVNEKLETGANAEWIAGSS-NTRFTIGTKYALDPDTSVKAKVNN-AGLAGLGYQQTLRPGIKVTLSAEFD  263 (281)
T ss_pred             cchhhhhhhhhhcchheeeeeEEEeecCC-ccEEEEEEEeccCCCceeeeeecC-CceeeEEEEEecCCCcEEEEEEEEe
Confidence            33344444332 34589999999987654 56799999997 467889999998 6999999999999997555666655


Q ss_pred             EE
Q 023824          204 RR  205 (276)
Q Consensus       204 ~~  205 (276)
                      ..
T Consensus       264 ~~  265 (281)
T KOG3126|consen  264 GK  265 (281)
T ss_pred             cc
Confidence            53

>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40

Probab=97.06  E-value=0.029  Score=45.43  Aligned_cols=95  Identities=7%  Similarity=-0.061  Sum_probs=59.5

Q ss_pred             eeEEEEEcccceeEEEEEecCCCCeEEEEEEe-ccCcceeeeEEEEEcCCCcceeeEEEEEEeCCCcEEEEEEcCCC---
Q 023824          104 GKLEVQYFHDHATFTSAIALNQSPCIDVTATI-GTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKG---  179 (276)
Q Consensus       104 ~k~~~~y~~~~~~~~~~~~l~~~p~~~~s~~~-~~~~~~lG~e~~yd~~~~~~~~~~~a~~y~~~~~~~~~~~~~~~---  179 (276)
                      -.+++.|..+..-+-.+|+  +.-.+++.... -.+++..=+++..  ..++...+-+-..|+..||++++++.|..   
T Consensus        58 Y~FgA~y~~~~~~l~G~id--~dG~l~ar~~~~~~~~~~~K~~~Q~--~~~~~~~~Q~e~DY~G~Dft~~lk~~Np~~~~  133 (161)
T TIGR00989        58 YAFSALFGTNQLFAQGNLD--NDGAVSTRLNYRWGDRTISKVQFQI--SGGQPDMCQFEHDHLGDDFSASLKAINPSFLE  133 (161)
T ss_pred             ceeeeEecCCcEEEEEEeC--CCCCEEEEEEEeeCcceeEEEEEEe--cCCCCceEEEEEEecCCeEEEEEEEcCccccc
Confidence            4555566665554445553  22223333222 1244333333322  23334566677999999999999987621   


Q ss_pred             ----CeEEEEEEEEeCCccceeEEEEEEE
Q 023824          180 ----DTIRASYVHHLDNLKKSAAVGEITR  204 (276)
Q Consensus       180 ----~~~~~Sy~~kv~~~~~~~~g~e~~~  204 (276)
                          ..+.++|.|.|.|+|  ++|+|+.|
T Consensus       134 ~~~sGi~v~sylQsVTp~L--aLG~E~~y  160 (161)
T TIGR00989       134 KGLTGIFVGSYLQSVTPRL--GLGLEALW  160 (161)
T ss_pred             ccceEEEEEeeeehhCcce--eeeeeeEe
Confidence                267899999999998  99999988

translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.

>PRK10716 long-chain fatty acid outer membrane transporter; Provisional

Probab=93.87  E-value=4  Score=38.67  Aligned_cols=75  Identities=4%  Similarity=-0.138  Sum_probs=49.1

Q ss_pred             CeEEEEEEEEeCCccceeEEEEEEEEccCCccEEEEEEEEeeCCC--CeEEEEEcCCceeEEEEEEEecCCeEEEEEEEe
Q 023824          180 DTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHL--TVVKAKLNNHGKLGALLQHEVIPKSLLTISSEV  257 (276)
Q Consensus       180 ~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~~~ld~~--~~~Kakv~s~g~v~~~~~~~l~~~~~l~ls~~~  257 (276)
                      +.+.++..|+++|+|  .+.+.+.|...+.=..+.+-.  . +..  ...--.-.+.+.+++..++++++.+++..+...
T Consensus       287 ~~~~lg~~~~~~~~~--~l~~d~~wt~WS~~~~l~i~~--~-~g~~~~~~~~~w~D~w~~~~G~~Y~~n~~l~LRaG~~y  361 (435)
T PRK10716        287 EMWEVSGYNRVAPQW--AIHYSLAYTSWSQFQELKATS--S-NGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAF  361 (435)
T ss_pred             cEEEEEeEEecCCcE--EEEEEEEEeeecccceEEEEe--C-CCcceecccccceeeeEEEeeEEEECCCCeEEEEeeEe
Confidence            677899999999997  999999987655433333311  0 000  011112356677778888888888888888877


Q ss_pred             ec
Q 023824          258 DT  259 (276)
Q Consensus       258 d~  259 (276)
                      |.
T Consensus       362 d~  363 (435)
T PRK10716        362 DD  363 (435)
T ss_pred             cc
Confidence            73

>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.59  E-value=0.053  Score=48.43  Aligned_cols=133  Identities=15%  Similarity=0.138  Sum_probs=87.7

Q ss_pred             CcceeeeEEEEEcC------------CCcceeeEEEEEEeCCCcEEEEEEcCC----CCeEEEEEEEEeCCccceeEEEE
Q 023824          138 PSIAFGAEAGYDTT------------SGNFTKYTAGISVTKPDSCASIILGDK----GDTIRASYVHHLDNLKKSAAVGE  201 (276)
Q Consensus       138 ~~~~lG~e~~yd~~------------~~~~~~~~~a~~y~~~~~~~~~~~~~~----~~~~~~Sy~~kv~~~~~~~~g~e  201 (276)
                      ..-.+.+.+.++..            .+.+-.+..-..|...++++++...+-    .+.+.++|.|.+.++|  ++|+|
T Consensus       105 ~~Gslna~l~~~l~~~Lr~K~~~q~~~~k~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~lqsvT~~L--sLG~E  182 (308)
T KOG3296|consen  105 NDGSLNARLIHQLTDNLRSKVALQIQQSKEVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASYLQSVTPRL--SLGGE  182 (308)
T ss_pred             CCCchhheeecccchhhHHHHHHHhcchhhhccccccceecccccccccccCcccccchHHHHHHHhhhcccc--cccce
Confidence            33566666666543            223345677788888888888887641    2456678999999998  99999


Q ss_pred             EEEEc--cCCccEEEEEEEEeeCCCCeEEEEEcCCceeEEEEEEEecCCeEEEEEEEeecccCCCCCeeEEEEEE
Q 023824          202 ITRRF--STNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIAL  274 (276)
Q Consensus       202 ~~~~~--~~~~~~~~vG~~~~ld~~~~~Kakv~s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~  274 (276)
                      +-|..  ...++.++++++|.. .+...-+-....|.-+..| +|..+.+......+.|..-=+...-+++++.+
T Consensus       183 l~~~~~~~~~~s~ls~a~RY~~-~~~~~~~t~g~~g~~~~y~-~r~~~~~~~~ve~~~~~~~~~~~~t~a~~~~l  255 (308)
T KOG3296|consen  183 LLYQRRPGPEESGLSYAGRYEH-SNWDATVTLGQQGLTGTYY-QRAVEKLQMGVEFETNTRLQSTDVTAAYGYDL  255 (308)
T ss_pred             eEeccCCCccccceeeeeeeee-cceeeEEecccccceehhh-hhhhhhhccceeEeeecccCCcceEEEEEeec
Confidence            99976  457899999999998 3444455555555444444 66667777777777766321112445554443

>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]

Probab=87.39  E-value=8.1  Score=36.68  Aligned_cols=75  Identities=9%  Similarity=-0.079  Sum_probs=52.6

Q ss_pred             CeEEEEEEEEeCCccceeEEEEEEEEccCCccEEEEEEEEeeCCCCeEEEEE---cCCceeEEEEEEEecCCeEEEEEEE
Q 023824          180 DTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKL---NNHGKLGALLQHEVIPKSLLTISSE  256 (276)
Q Consensus       180 ~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~~~ld~~~~~Kakv---~s~g~v~~~~~~~l~~~~~l~ls~~  256 (276)
                      ..+..+++|+++|+|  ++...++|...++=..+.+=..   .....+....   .+.+.+++.-++++++.+++..+..
T Consensus       286 ~~~el~~~~~~~d~w--~~~~s~~wT~WS~f~~l~~~~~---~~~~~~~~~~~~yrD~wt~a~G~~Y~~nd~~tlragia  360 (440)
T COG2067         286 ASAELSGQHKVADQW--AIHGSVKWTDWSSFDKLDFVFT---FGKTLFAKTEDGYRDTWTVALGTTYKFNDQWTLRAGIA  360 (440)
T ss_pred             cEEEEeeeeccCCCe--EEEEEEEEeeccCCceEEEEEc---CCCccccccccccccccEEeeeceeEcCccceEeeeee
Confidence            577889999999998  9999999987664444444332   2233333333   3677778888888888888888877


Q ss_pred             eec
Q 023824          257 VDT  259 (276)
Q Consensus       257 ~d~  259 (276)
                      .|.
T Consensus       361 yD~  363 (440)
T COG2067         361 YDQ  363 (440)
T ss_pred             ecC
Confidence            776

>PF12519 DUF3722: Protein of unknown function (DUF3722) ; InterPro: IPR022197 This family of proteins is found in eukaryotes

Probab=86.15  E-value=2.1  Score=37.60  Aligned_cols=64  Identities=14%  Similarity=0.136  Sum_probs=52.7

Q ss_pred             CcceeeeEEEEEcCCCcceeeEEEEEEeC------CCcEEEEEEcCCCCeEEEEEEEEeCCccceeEEEEEEE
Q 023824          138 PSIAFGAEAGYDTTSGNFTKYTAGISVTK------PDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITR  204 (276)
Q Consensus       138 ~~~~lG~e~~yd~~~~~~~~~~~a~~y~~------~~~~~~~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~  204 (276)
                      ..|.+|+|+-|-...+. -..+.|+||..      ..+++++++++-++.+..+|--|.++..  +++.++++
T Consensus       190 ~r~S~GaE~yys~~~ks-~G~STglRf~Tlp~~tg~PlTlTlt~NPl~GhiSstYs~k~s~~~--a~~SrfdF  259 (260)
T PF12519_consen  190 GRFSAGAELYYSALNKS-PGCSTGLRFCTLPAHTGKPLTLTLTLNPLMGHISSTYSVKASPNS--AFCSRFDF  259 (260)
T ss_pred             ceEeeccEEEEEeeccC-CcccceeEEEecCCCCCCCeEEEEEeccccccchheeeeeccCCc--eEEeeccc
Confidence            38999999999765443 36899999964      4789999999988999999999999985  88777654

Proteins in this family are typically between 415 and 473 amino acids in length.

>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]

Probab=84.57  E-value=27  Score=33.22  Aligned_cols=47  Identities=15%  Similarity=0.088  Sum_probs=23.1

Q ss_pred             CeEEEEEEEEeCCccceeEEEEEEEEcc-------------CCccEEEEEEEEeeCCCCeEE
Q 023824          180 DTIRASYVHHLDNLKKSAAVGEITRRFS-------------TNENTFTVGGSYAVDHLTVVK  228 (276)
Q Consensus       180 ~~~~~Sy~~kv~~~~~~~~g~e~~~~~~-------------~~~~~~~vG~~~~ld~~~~~K  228 (276)
                      -++....-|+++|+|  ++-+-+.|+..             .....+++|..|+++++..|.
T Consensus       339 wt~a~G~~Y~~nd~~--tlragiayD~s~s~~~~~~~~iPd~Dr~~~s~G~~Y~~t~n~~vd  398 (440)
T COG2067         339 WTVALGTTYKFNDQW--TLRAGIAYDQSPSPAQNRSISIPDTDRWWLSLGTTYKFTKNLEVD  398 (440)
T ss_pred             cEEeeeceeEcCccc--eEeeeeeecCCCCcccccccccCCCCcEEEeCccEEecCCCeEEE
Confidence            445555556666666  33333334211             122345666666666555544

>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function

Probab=82.45  E-value=40  Score=30.92  Aligned_cols=46  Identities=13%  Similarity=0.138  Sum_probs=35.4

Q ss_pred             EEcCCceeEEEEEEEecCCeEEEEEEEeecccCC--C----CCeeEEEEEEe
Q 023824          230 KLNNHGKLGALLQHEVIPKSLLTISSEVDTKALE--K----TPRFGLAIALK  275 (276)
Q Consensus       230 kv~s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~--~----~~k~G~~l~~~  275 (276)
                      +-|+...+++.++.++++.+.+.++.+..-++-+  .    .+.+++++.++
T Consensus       329 r~D~~~~~~~~~~y~~~r~~~~~~~y~~~~~~S~~~~~~y~~n~v~l~l~~~  380 (381)
T PF10082_consen  329 REDDTYSAGLGLTYRLNRWLSLSAGYRYEDRDSNIPSYDYDRNRVGLGLTYQ  380 (381)
T ss_pred             ceeeEEEEEEEEEEEecCCEEEEEEEEEEEeeCCCCCCceEeEEEEEEEEEE
Confidence            7778888999999999999999988877765411  1    26888888764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	276
3emn_X	295	Voltage-dependent anion-selective channel protein;	6e-64
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A Length = 295

 Score =  201 bits (512), Expect = 6e-64
 Identities = 56/283 (19%), Positives = 106/283 (37%), Gaps = 14/283 (4%)

Query: 4   GPGLFADIGKKAKDLLTKDYNADQ-KISISTYSGAGVALTSTAVKKG--GLSAGDVAAQY 60
            P  +AD+GK A+D+ TK Y     K+ + T S  G+  TS+           G +  +Y
Sbjct: 15  VPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKY 74

Query: 61  KYK--NVLFDVKVDTESNILTTFTLTEIL-PSTKAIASLKVPDYN---SGKLEVQYFHDH 114
           ++    + F  K +T++ + T  T+ + L    K              + K++  Y  +H
Sbjct: 75  RWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREH 134

Query: 115 ATFTSAIALNQS-PCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASI 173
                 +  + + P I     +G      G +  ++T+    T+    +     +     
Sbjct: 135 INLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHT 194

Query: 174 ILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNN 233
            + D G     S    ++  KK      +      +   F +   Y VD      AK+NN
Sbjct: 195 NVND-GTEFGGSIYQKVN--KKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNN 251

Query: 234 HGKLGALLQHEVIPKSLLTISSEVDTKALEKTP-RFGLAIALK 275
              +G      + P   LT+S+ +D K +     + GL +  +
Sbjct: 252 SSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 294

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 47/268 (17%), Positives = 90/268 (33%), Gaps = 74/268 (27%)

Query: 59  QYKYKNVL----------FDVK--VDTESNILTTFTLTEILPSTKAI-ASLKVPDY--NS 103
           QY+YK++L          FD K   D   +IL+   +  I+ S  A+  +L++     + 
Sbjct: 15  QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74

Query: 104 GKLEVQYF------HDHATFTSAIAL-NQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFT 156
            +  VQ F       ++    S I    + P +     I      +         +  F 
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-------NDNQVFA 127

Query: 157 KYTAGISVTKPD-------------SCASIIL-GDKG--------DTIRASYVH------ 188
           KY    +V++                  ++++ G  G        D   +  V       
Sbjct: 128 KY----NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 189 ----HLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNN-HGKLGALLQH 243
               +L N      V E+ ++            +   DH + +K ++++   +L  LL+ 
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQ---IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 244 EVIPKSLLTISSEV-DTKALEKTPRFGL 270
           +     LL +   V + KA      F L
Sbjct: 241 KPYENCLL-VLLNVQNAKAWNA---FNL 264

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	276
3emn_X	295	Voltage-dependent anion-selective channel protein;	100.0
3emn_X	295	Voltage-dependent anion-selective channel protein;	98.62
3bs0_A	439	TODX; beta barrel, outer membrane protein, transpo	91.66
3nsg_A	341	Outer membrane protein F; porin, beta barrel, beta	89.88
3bry_A	441	TBUX; beta barrel, outer membrane protein, transpo	87.52
3pgu_A	427	Long-chain fatty acid transport protein; outer mem	87.17
3prn_A	289	Porin; integral membrane protein, pore eyelet muta	86.31
3dwo_X	451	Probable outer membrane protein; beta barrel; HET:	85.79
2por_A	301	Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SC	82.33

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A

Probab=100.00  E-value=2.3e-69  Score=479.14  Aligned_cols=272  Identities=20%  Similarity=0.336  Sum_probs=261.1

Q ss_pred             CCCCCCcccccccccccccCCCCCc-ceEEEEEecCCCeEEEEEEEecC--CeeeeEEEEEEEEeC--eEEEEEEcCCCc
Q 023824            2 SKGPGLFADIGKKAKDLLTKDYNAD-QKISISTYSGAGVALTSTAVKKG--GLSAGDVAAQYKYKN--VLFDVKVDTESN   76 (276)
Q Consensus         2 ~~~P~~f~dl~K~akdll~k~y~~~-~~l~~~t~~~~g~~~~~~~~~~~--~~~~g~~~~k~~~~~--~~~~~~~~t~~~   76 (276)
                      |.+||+|.||||.|||||+|||+++ |+|+|+|++++|++|++++++++  +++.|+||++|++++  ++++++|+|+|.
T Consensus        13 ~~~pp~y~DigK~AkDll~kdy~~~~~kl~~kt~s~~gv~ft~~g~~~~~~~~v~g~le~kyk~~~~g~t~~~kw~t~n~   92 (295)
T 3emn_X           13 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNT   92 (295)
T ss_dssp             CCSCCCGGGTTHHHHHHHHTTCCTTEEEEEEECCCSSEEEEEEEEEEETTTCCEEEEEEEEEEETTTTEEEEEEEETTSC
T ss_pred             cCCCCcccccccchHHhccCCcCCCCEEEEEEEEcCCCEEEEEEEEecCCCCceeeEEEEEEEecCCcEEEEEEEeCCCc
Confidence            7899999999999999999999999 99999999999999999998876  899999999999985  899999999999


Q ss_pred             eEEEEEEcc-ccCCceEEEEEEe-cC--CCceeEEEEEcccceeEEEEEec-CCCCeEEEEEEeccCcceeeeEEEEEcC
Q 023824           77 ILTTFTLTE-ILPSTKAIASLKV-PD--YNSGKLEVQYFHDHATFTSAIAL-NQSPCIDVTATIGTPSIAFGAEAGYDTT  151 (276)
Q Consensus        77 l~~~i~~~~-~~~Glk~~~~~~~-p~--~~~~k~~~~y~~~~~~~~~~~~l-~~~p~~~~s~~~~~~~~~lG~e~~yd~~  151 (276)
                      |.++|++++ ++||+|+.+++.+ |+  .+++|++++|+++++++++++++ ..+|.++.++++++++|++|+|+.||.+
T Consensus        93 l~t~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g~~~~~~G~e~~yd~~  172 (295)
T 3emn_X           93 LGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETS  172 (295)
T ss_dssp             EEEEEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred             EEEEEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEeeCCEEEEEEEEEEeC
Confidence            999999999 9999999999986 76  37999999999999999999998 4799999999999999999999999999


Q ss_pred             CCcceeeEEEEEEeCCCcEEEEEEcCCCCeEEEEEEEEeCCccceeEEEEEEEEccCCccEEEEEEEEeeCCCCeEEEEE
Q 023824          152 SGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKL  231 (276)
Q Consensus       152 ~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~~~ld~~~~~Kakv  231 (276)
                      .+++++|+++++|+.+||++++++++ ++.+++|||||++|++  ++|+|+.|+...++++++||+||++|+++++||||
T Consensus       173 ~~~~t~~n~~~gY~~~d~~~s~~l~~-~~~~~aSy~qkvs~~~--~~g~e~~~~~~~~~~~~tvG~ky~ld~~~~vKakv  249 (295)
T 3emn_X          173 KSRVTQSNFAVGYKTDEFQLHTNVND-GTEFGGSIYQKVNKKL--ETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKV  249 (295)
T ss_dssp             TTEEEEEEEEEEEECSSEEEEEEEET-TTEEEEEEEEECSSSE--EEEEEEEEETTEEEEEEEEEEEECCSSSEEEEEEE
T ss_pred             CCCeeeEEEEEEEcCCCEEEEEEECC-CCeEEEEEEEECCCce--EEEEEEEEeccCCCcEEEEEEEEEcCCCCEEEEEE
Confidence            99999999999999999999999998 7999999999999995  99999999998899999999999999999999999


Q ss_pred             cCCceeEEEEEEEecCCeEEEEEEEeecccCC-CCCeeEEEEEEeC
Q 023824          232 NNHGKLGALLQHEVIPKSLLTISSEVDTKALE-KTPRFGLAIALKP  276 (276)
Q Consensus       232 ~s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~-~~~k~G~~l~~~~  276 (276)
                      |++|.|+++|||+|+|++++++|+++|+++++ +.||||++|+||+
T Consensus       250 n~~g~v~~~y~~kl~p~v~ltls~~iD~~~l~~~~~K~Gl~l~l~~  295 (295)
T 3emn_X          250 NNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA  295 (295)
T ss_dssp             ETTSEEEEEEEEEEETTEEEEEEEEEESSCTTTSCCEEEEEEEEEC
T ss_pred             CCCCEEEEEEEEecCCCcEEEEEEEECccccCCCCCcEEEEEEEeC
Confidence            99999999999999999999999999999986 4699999999985

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A

Probab=98.62  E-value=3.3e-05  Score=67.96  Aligned_cols=185  Identities=14%  Similarity=0.190  Sum_probs=125.2

Q ss_pred             eEEEEEecCCCeEEEEEEEec--CCeeeeEEEEEEEEeCeEEE--EEEcCCC-ceEEEEEEccccCCceEEEEEEe--cC
Q 023824           28 KISISTYSGAGVALTSTAVKK--GGLSAGDVAAQYKYKNVLFD--VKVDTES-NILTTFTLTEILPSTKAIASLKV--PD  100 (276)
Q Consensus        28 ~l~~~t~~~~g~~~~~~~~~~--~~~~~g~~~~k~~~~~~~~~--~~~~t~~-~l~~~i~~~~~~~Glk~~~~~~~--p~  100 (276)
                      +|++..+-..|+.........  .+.-.+.++.+|+.+.+.+.  ...+..+ .+.....+.  .+|+-+-.++.+  +.
T Consensus        96 ~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g--~~~~~~G~e~~yd~~~  173 (295)
T 3emn_X           96 EITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLG--YEGWLAGYQMNFETSK  173 (295)
T ss_dssp             EEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEE--ETTEEEEEEEEEETTT
T ss_pred             EEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEe--eCCEEEEEEEEEEeCC
Confidence            455555445676665555432  24558899999998766554  3332222 344443332  366666555543  32


Q ss_pred             C--CceeEEEEEcccceeEEEEEecCCCCeEEEEEEe-ccCcceeeeEEEEEcCCCcceeeEEEEEEeC-CCcEEEEEEc
Q 023824          101 Y--NSGKLEVQYFHDHATFTSAIALNQSPCIDVTATI-GTPSIAFGAEAGYDTTSGNFTKYTAGISVTK-PDSCASIILG  176 (276)
Q Consensus       101 ~--~~~k~~~~y~~~~~~~~~~~~l~~~p~~~~s~~~-~~~~~~lG~e~~yd~~~~~~~~~~~a~~y~~-~~~~~~~~~~  176 (276)
                      .  ....+.++|..+++.+.+.++  +...+.+|... ..+++.+|+|+.|+... +-+..++|..|.- ++..+.++++
T Consensus       174 ~~~t~~n~~~gY~~~d~~~s~~l~--~~~~~~aSy~qkvs~~~~~g~e~~~~~~~-~~~~~tvG~ky~ld~~~~vKakvn  250 (295)
T 3emn_X          174 SRVTQSNFAVGYKTDEFQLHTNVN--DGTEFGGSIYQKVNKKLETAVNLAWTAGN-SNTRFGIAAKYQVDPDACFSAKVN  250 (295)
T ss_dssp             TEEEEEEEEEEEECSSEEEEEEEE--TTTEEEEEEEEECSSSEEEEEEEEEETTE-EEEEEEEEEEECCSSSEEEEEEEE
T ss_pred             CCeeeEEEEEEEcCCCEEEEEEEC--CCCeEEEEEEEECCCceEEEEEEEEeccC-CCcEEEEEEEEEcCCCCEEEEEEC
Confidence            2  346678999999999988875  44567777766 45889999999999754 3457888888976 6899999999


Q ss_pred             CCCCeEEEEEEEEeCCccceeEEEEEEEE-ccCCccEEEEEEE
Q 023824          177 DKGDTIRASYVHHLDNLKKSAAVGEITRR-FSTNENTFTVGGS  218 (276)
Q Consensus       177 ~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~-~~~~~~~~~vG~~  218 (276)
                      + ...+.+.|-|++.|.+.+.+++|+... +..+...+.+|..
T Consensus       251 ~-~g~v~~~y~~kl~p~v~ltls~~iD~~~l~~~~~K~Gl~l~  292 (295)
T 3emn_X          251 N-SSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLE  292 (295)
T ss_dssp             T-TSEEEEEEEEEEETTEEEEEEEEEESSCTTTSCCEEEEEEE
T ss_pred             C-CCEEEEEEEEecCCCcEEEEEEEECccccCCCCCcEEEEEE
Confidence            9 589999999999998755666676653 3335556655553

>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*

Probab=91.66  E-value=7.6  Score=35.22  Aligned_cols=75  Identities=9%  Similarity=0.148  Sum_probs=49.5

Q ss_pred             CeEEEEEEEEeCCccceeEEEEEEEEccCC--------------------------ccEEEEEEEEeeCCCCeEEEEEc-
Q 023824          180 DTIRASYVHHLDNLKKSAAVGEITRRFSTN--------------------------ENTFTVGGSYAVDHLTVVKAKLN-  232 (276)
Q Consensus       180 ~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~--------------------------~~~~~vG~~~~ld~~~~~Kakv~-  232 (276)
                      ..+.++..|++.++|  .+.+++.|...+.                          ...+++|++|++++..++|+=+. 
T Consensus       279 ~~~~~g~~~~~~~~~--~l~~d~~~~~WS~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRaG~~y  356 (439)
T 3bs0_A          279 ASLTLGLAHQFNERW--VVAADIKRAYWGDVMDSMNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGYSY  356 (439)
T ss_dssp             CEEEEEEEEESSSSE--EEEEEEEEECGGGCCC-CCCEEEETTEEEEECCCCCCCCEEEEEEEEEEECSSSEEEEEEEEE
T ss_pred             cEEEEeEEEEeCCCE--EEEEEEEEEEccchhhheeeeecCCCCCccccCCCCceeeeEEEEEEEEEcCCCEEEEEeeEc
Confidence            678999999999997  9999988864332                          23467777777777777776431 


Q ss_pred             -----------------CCceeEEEEEEEecCCeEEEEEEE
Q 023824          233 -----------------NHGKLGALLQHEVIPKSLLTISSE  256 (276)
Q Consensus       233 -----------------s~g~v~~~~~~~l~~~~~l~ls~~  256 (276)
                                       +...+++....++.+++.+.++.+
T Consensus       357 d~sp~~~~~~~~~~p~~~~~~~s~G~gy~~~~~~~id~a~~  397 (439)
T 3bs0_A          357 AQQALDSELILPVIPAYLKRHVTFGGEYDFDKDSRINLAIS  397 (439)
T ss_dssp             CC------CCCTTSCCCCSEEEEEEEEEESSSSEEEEEEEE
T ss_pred             ccCCCCcccccccccCccceEEEeeeEEEcCCCcEEEEEEE
Confidence                             112345555556655555555544

>3nsg_A Outer membrane protein F; porin, beta barrel, beta barrel MEMB protein; HET: LDA TAM FLC TLA; 2.79A {Salmonella enterica subsp}

Probab=89.88  E-value=9.6  Score=33.41  Aligned_cols=117  Identities=5%  Similarity=-0.041  Sum_probs=74.9

Q ss_pred             eeeEEEEEEeCCCcEEEEEEcCC---------------CCeEEEEEEEEeCCccceeEEEEEEEEc--------------
Q 023824          156 TKYTAGISVTKPDSCASIILGDK---------------GDTIRASYVHHLDNLKKSAAVGEITRRF--------------  206 (276)
Q Consensus       156 ~~~~~a~~y~~~~~~~~~~~~~~---------------~~~~~~Sy~~kv~~~~~~~~g~e~~~~~--------------  206 (276)
                      ..|.+++.|..+.+.+.+-....               ...+.+.--..+.+-   .+++...+..              
T Consensus       171 ~~~~~~~~Y~~g~l~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~g~~---~l~a~Y~~~~~~~~~~~~~~~~~~  247 (341)
T 3nsg_A          171 DGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANNV---YLAAVYAETRNMSIVENTVTDTVE  247 (341)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEEECCCSTTSSSSSCCSCEEEEEEEEEEEETTE---EEEEEEEEESSCCCEECTTTCCEE
T ss_pred             ceEEEEEEEEcCCEEEEEEEEeecCcccccccccCccceEEEEEEeEEEeCCE---EEEEEEEEEEeccccCcccccccc
Confidence            45888888888888777654210               122333333445542   6666665532              


Q ss_pred             -cCCccEEEEEEEEeeCCCCeEEEEE-----cC----------CceeEEEEEEEecCCeEEEEEEEeeccc--------C
Q 023824          207 -STNENTFTVGGSYAVDHLTVVKAKL-----NN----------HGKLGALLQHEVIPKSLLTISSEVDTKA--------L  262 (276)
Q Consensus       207 -~~~~~~~~vG~~~~ld~~~~~Kakv-----~s----------~g~v~~~~~~~l~~~~~l~ls~~~d~~~--------~  262 (276)
                       ..+...++++++|++.+..++++-.     +.          .-.+.+.+.+.|+++..+-+...++.-+        .
T Consensus       248 ~~~~~~~~~~ga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~lg~~Y~LSKrT~lY~~y~~~~~~~~~~~~~~~  327 (341)
T 3nsg_A          248 MANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDENDYSSSYV  327 (341)
T ss_dssp             CCSEEEEEEEEEEECCTTSCCEEEEEEEEEEESCTTTTSCEEEEEEEEEEEEECCCSSEEEEEEEEEECCCCCSSCTTTT
T ss_pred             cceEEEEEEEEEEEEecCCcEEEEEEEEEeccccccccCCcCccEEEEEEEEEEecCCEEEEEEEEEecccCcccccccc
Confidence             1234678999999998877776532     11          1247888999999999998888887632        1


Q ss_pred             CCCCeeEEEEEEe
Q 023824          263 EKTPRFGLAIALK  275 (276)
Q Consensus       263 ~~~~k~G~~l~~~  275 (276)
                      +..-.+++|+..+
T Consensus       328 ~~dd~~~vGlry~  340 (341)
T 3nsg_A          328 GTDDQAAVGITYQ  340 (341)
T ss_dssp             CSSCEEEEEEEEE
T ss_pred             CcCCEEEEEEEEE
Confidence            1236899988753

>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}

Probab=87.52  E-value=16  Score=32.97  Aligned_cols=76  Identities=9%  Similarity=0.052  Sum_probs=46.6

Q ss_pred             CeEEEEEEEEeCCccceeEEEEEEEEccCC-ccEEEEEEEEeeCC-----CCeEEEEEcCCceeEEEEEEEecCCeEEEE
Q 023824          180 DTIRASYVHHLDNLKKSAAVGEITRRFSTN-ENTFTVGGSYAVDH-----LTVVKAKLNNHGKLGALLQHEVIPKSLLTI  253 (276)
Q Consensus       180 ~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~-~~~~~vG~~~~ld~-----~~~~Kakv~s~g~v~~~~~~~l~~~~~l~l  253 (276)
                      ..+.++..|++.++|  .+.+++.|...+. -..+.+-.  .-+.     .....-...+.+.+++..|.++++.+++..
T Consensus       279 ~~~~~g~~~~~~~~~--~l~~d~~~~~wS~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRa  354 (441)
T 3bry_A          279 AQLTVGISHQFNDQL--SVSADYQRVFWSSVMKDMNVGF--VQSGSAANLDLSLPQNYRDISVFGIGAEYRYNAKWTFRG  354 (441)
T ss_dssp             CEEEEEEEEESSSSE--EEEEEEEEECGGGCCSEEEEEE--CCSSSCCCCCCEEECCCCCEEEEEEEEEEEEETTEEEEE
T ss_pred             cEEEEeEEEEeCCCE--EEEEEEEEEEccchhhheeeec--cCCcccccccccCCCCceeceEEEEEEEEEcCCCeEEEE
Confidence            678899999999997  9999998865443 22222211  0000     011223334556677777777777777777


Q ss_pred             EEEeec
Q 023824          254 SSEVDT  259 (276)
Q Consensus       254 s~~~d~  259 (276)
                      +...|.
T Consensus       355 G~~yd~  360 (441)
T 3bry_A          355 GFHYAQ  360 (441)
T ss_dssp             EEEEEE
T ss_pred             eeeccc
Confidence            776666

>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A

Probab=87.17  E-value=7.8  Score=35.22  Aligned_cols=75  Identities=5%  Similarity=-0.116  Sum_probs=47.3

Q ss_pred             CeEEEEEEEEeCCccceeEEEEEEEEccCCccEEEEEEEEeeCCCC---eEEEEEcCCceeEEEEEEEecCCeEEEEEEE
Q 023824          180 DTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLT---VVKAKLNNHGKLGALLQHEVIPKSLLTISSE  256 (276)
Q Consensus       180 ~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~~~ld~~~---~~Kakv~s~g~v~~~~~~~l~~~~~l~ls~~  256 (276)
                      ..+.++..|++.++|  .+.+++.|...+.-..+.+-.    ++..   ...-...+.+.+.+..++++++.+++..+..
T Consensus       273 ~~~~~g~~~~~~~~~--~l~~d~~~~~WS~~~~~~~~~----~~g~~~~~~~~~~~D~~~~~lG~eY~~~~~~~lRaG~~  346 (427)
T 3pgu_A          273 EMWEVSGYNRVDPQW--AIHYSLAYTSWSQFQQLKATS----TSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIA  346 (427)
T ss_dssp             EEEEEEEEEEEETTE--EEEEEEEEEEESSCSCEEEEE----ETTEEEEEECCCCEEEEEEEEEEEEECSSSEEEEEEEE
T ss_pred             cEEEEEEEEecCCCE--EEEEEEEEEEeccccceEEEc----CCCcccccccCCceeccEEEEEEEEEcCCCEEEEEEEE
Confidence            577888999999997  999999987544322222211    0110   1111234556677777778888888888877


Q ss_pred             eecc
Q 023824          257 VDTK  260 (276)
Q Consensus       257 ~d~~  260 (276)
                      .|..
T Consensus       347 yd~s  350 (427)
T 3pgu_A          347 FDDS  350 (427)
T ss_dssp             EEEC
T ss_pred             EccC
Confidence            7764

>3prn_A Porin; integral membrane protein, pore eyelet mutant, membra protein; HET: C8E; 1.90A {Rhodobacter blasticus} SCOP: f.4.3.1 PDB: 1bh3_A* 1prn_A* 7prn_A* 6prn_A* 5prn_A* 2prn_A* 8prn_A* 1h6s_1

Probab=86.31  E-value=15  Score=31.57  Aligned_cols=113  Identities=13%  Similarity=0.108  Sum_probs=64.7

Q ss_pred             eeEEEEEEeCCCcEEEEEEc-------CCCCeEEEEEEEEeCCccceeEEEEEEEE-ccCCccEEEEEEEEeeCCCCeEE
Q 023824          157 KYTAGISVTKPDSCASIILG-------DKGDTIRASYVHHLDNLKKSAAVGEITRR-FSTNENTFTVGGSYAVDHLTVVK  228 (276)
Q Consensus       157 ~~~~a~~y~~~~~~~~~~~~-------~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~-~~~~~~~~~vG~~~~ld~~~~~K  228 (276)
                      .|.+++.|+..++.+++-..       + .+.+.++.=..+.+.+  .+++-..-. .......+.++..|.+ ..++|+
T Consensus       163 ~~~l~a~Yt~g~~~v~aaY~~d~ag~~D-~~~~~l~~~y~fG~~~--~v~~~Y~d~~d~~~~~~~gl~~~Y~v-~a~tv~  238 (289)
T 3prn_A          163 EFGIAADWSNDMISLAAAYTTDAGGIVD-NDIAFVGAAYKFNDAG--TVGLNWYDNGLSTAGDQVTLYGNYAF-GATTVR  238 (289)
T ss_dssp             EEEEEEEEECSSEEEEEEEEESGGGCTT-CCEEEEEEEECCSSSE--EEEEEEEECTTSTTCSEEEEEEEEEE-TTEEEE
T ss_pred             eEEEEEEEecCCEEEEEEEeccCCCCCC-ccEEEEEEEEEcCCCe--EEEEEEEccccccCCceEEEEEEeEe-cCeEEE
Confidence            45555555555544444322       1 2345555555555322  444433222 1123456788888888 778888


Q ss_pred             EEEcC------CceeEEEEEEEecCCeEEEEEEEeecccCCCCCeeEEEEEE
Q 023824          229 AKLNN------HGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIAL  274 (276)
Q Consensus       229 akv~s------~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~  274 (276)
                      +-+.+      ....++.+++.|..+.+|..+..-+-.. .....+|+.++|
T Consensus       239 a~y~D~~~~~~~t~yGIg~~YDLGgGasl~~gy~~~~~~-~~~ad~Gv~F~F  289 (289)
T 3prn_A          239 AYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGFAN-ETVADVGVRFDF  289 (289)
T ss_dssp             EEEEEECSTTCCCEEEEEEEEEEETTEEEEEEEEECTTC-CEEEEEEEEEEC
T ss_pred             EEEeccccCCCcceEEEEEEecCCCCeEEEEEEEEcCCC-ceEEeeeeEeeC
Confidence            87653      2357899999999999998888744311 011467776654

>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa}

Probab=85.79  E-value=21  Score=32.59  Aligned_cols=48  Identities=23%  Similarity=0.276  Sum_probs=33.6

Q ss_pred             CeEEEEEEEEeCCccceeEEEEEEEEccC----------------------CccEEEEEEEEeeCCCCeEEE
Q 023824          180 DTIRASYVHHLDNLKKSAAVGEITRRFST----------------------NENTFTVGGSYAVDHLTVVKA  229 (276)
Q Consensus       180 ~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~----------------------~~~~~~vG~~~~ld~~~~~Ka  229 (276)
                      ..+.++..|+++++|  .+.+++.|...+                      ....+++|+.|++++..++|+
T Consensus       286 ~~~~lg~~~~~~~~~--~l~~d~~~~~wS~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~eY~~~~~~tlRa  355 (451)
T 3dwo_X          286 AYASLDWVHQFNDRL--SLGASATWTEWSSFQDLTLKSHGNTIVSIPYTYRNTWTLAVGGDYKVTDQWTMRA  355 (451)
T ss_dssp             CEEEEEEEEECSSSE--EEEEEEEEECGGGCCEEEEEETTEEEEEEECCCCCEEEEEEEEEEESSSSEEEEE
T ss_pred             cEEEEEEEEEeCCCE--EEEEEEEEEEecCcceeEEEcCCccccccccCceeeeEEEEEEEEEeCCCEEEEE
Confidence            677788888888886  888877775322                      345666667777666666666

>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB: 3por_A*

Probab=82.33  E-value=23  Score=30.33  Aligned_cols=63  Identities=5%  Similarity=-0.002  Sum_probs=40.6

Q ss_pred             cEEEEEE--EEeeCCCCeEEEEEc-----CCceeEEEEEEEecCCeEEEEEEEeecccCCCCCeeEEEEEE
Q 023824          211 NTFTVGG--SYAVDHLTVVKAKLN-----NHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIAL  274 (276)
Q Consensus       211 ~~~~vG~--~~~ld~~~~~Kakv~-----s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~  274 (276)
                      ..+.+|+  +|.+.+..++++-..     +...+++.|++.|+|++++-.+-..+-.. +....+-+|+.+
T Consensus       230 ~~~~lga~~~y~~~~~~~~~~~y~~~~~d~a~~~~lg~~Y~Ls~~~~lya~y~~~~~~-~~~~~~~~Gvr~  299 (301)
T 2por_A          230 KAYGLSVDSTFGATTVGGYVQVLDIDTIDDVTYYGLGASYDLGGGASIVGGIADNDLP-NSDMVADLGVKF  299 (301)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEEEETTEEEEEEEEEECSS-SCCCEEEEEEEE
T ss_pred             ceEEEEEEEeEEcCCcEEEEEEEEcCCCCcccEEEEEEEEcCCCCeEEEEEEEeccCC-CCceeEEEEeEE
Confidence            4577788  888865554666553     23478999999999999997777655421 111345555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	276
d1t16a_	427	Long-chain fatty acid transport protein FadL {Esch	88.09

>d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: Porins
family: Outer membrane protein transport protein
domain: Long-chain fatty acid transport protein FadL
species: Escherichia coli [TaxId: 562]

Probab=88.09  E-value=6.1  Score=32.56  Aligned_cols=76  Identities=11%  Similarity=-0.008  Sum_probs=53.3

Q ss_pred             CeEEEEEEEEeCCccceeEEEEEEEEcc-----------------------CCccEEEEEEEEeeCCCCeEEEEEcC---
Q 023824          180 DTIRASYVHHLDNLKKSAAVGEITRRFS-----------------------TNENTFTVGGSYAVDHLTVVKAKLNN---  233 (276)
Q Consensus       180 ~~~~~Sy~~kv~~~~~~~~g~e~~~~~~-----------------------~~~~~~~vG~~~~ld~~~~~Kakv~s---  233 (276)
                      ..+.+++-+++.++|  .+.+++.+...                       .....+.+|.+|++.+...+|+-+.-   
T Consensus       273 ~~~~~G~~~~~~~~~--~l~~d~~~~~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ey~~~~~l~lR~Gy~y~~~  350 (427)
T d1t16a_         273 EMWEVSGYNRVDPQW--AIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDS  350 (427)
T ss_dssp             CEEEEEEEEEEETTE--EEEEEEEEECGGGCCEEEEECTTSCEEEEEECCCCCEEEEEEEEEECCSSSEEEEEEEEEECC
T ss_pred             cEEEEEEEEEeccce--eEEEeeeecccccccccccccCCCcccccccccccceEEEEEEEEEEecccEEEEEEEEEccC
Confidence            567777778888886  77777777432                       23577888888888878888886541   


Q ss_pred             ---------------CceeEEEEEEEecCCeEEEEEEEe
Q 023824          234 ---------------HGKLGALLQHEVIPKSLLTISSEV  257 (276)
Q Consensus       234 ---------------~g~v~~~~~~~l~~~~~l~ls~~~  257 (276)
                                     .-.+++....++.+.+.+.++.+.
T Consensus       351 ~~~~~~~~~~~p~~~~~~~s~G~~~~~~~~~~id~a~~y  389 (427)
T d1t16a_         351 PVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSY  389 (427)
T ss_dssp             SSCTTTCCSSSCCCCEEEEEEEEEEESSSSEEEEEEEEE
T ss_pred             CCCcccccccccCCCCEEEEEEEEEEcCCCeEEEEEEEE
Confidence                           223566777778777777776653