Citrus Sinensis ID: 023942

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
Protein Sequence
MYGQSQSMNISSQMSGGGAAADEDDVSVAADDHHLSYDPHSALENGIVVVEDVAHDSGYATGGNELSNSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSSPQGMEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQRSKHGNLFLWHISSFRVKVK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccEEEEccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccEEEEEEccEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEccccHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEHHHHHHHHHHcccccccEcccccccccccccccccccccccccccEEEccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEccEEEEEc
Coil and Loop (DISEMBL)
mygqsqsmnissqmsgggaaadeddvsvaaddhhlsydphsaleNGIVVVEdvahdsgyatggnelsnssqltlsfrgqvyvfdsvtPDKVQAVLLLLGgcelssspqgmeviphsqrgiadypakctqpqraaSLDRFRQKRKERCFDKKVRYSVRQEVALRMQRnkgqftsakkceggalgwsnaqdpgqddspsetscthcgisskstpmmrrgpsgprslcnacglfwankGALRDlgkkmedqpltpaeqrskhgnlfLWHISSFRVKVK
Flexible Loop (DISEMBL)
MYGQSQSMNISSQMSGGGAAADEDDVSVAADDHHLSYDPHSALENGIVVVEDVAHDSGYATggnelsnssqLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSSPQGMEVIPHSQRGIADypakctqpqraasldrfrqkrkercfdkkvrysvRQEVAlrmqrnkgqftsakkceggaLGWSNAQDPGQDDSPSETSCTHcgisskstpmmrRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTpaeqrskhgnlflwhissfrvkvk
Low Complexity Region (SEG)
MYgqsqsmnissqmsgggaaadeddvsvaaddHHLSYDPHSALENGIVVVEDVAHDSGYATGGNELSNSSQLTLSFRGQVYVFDSVTPDKVQAVllllggcelsssPQGMEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQRSKHGNLFLWHISSFRVKVK
Disordered region (IsUnstruct)
****************************************SALENGIVVVEDVAHDSGYATG********QLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCEL*******************************************CFDKKVRYSVR******************************************************************LCNACGLFWANKGALR********************GNLFLWHISSFR****
Disordered Region (DISOPRED)
******************************************************************************************************************************************************************************KKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWA******************************************
Disordered Region (DISEMBL)
**********************EDDVSVAADDHHLSYDPHSALENGIVVVEDVAHDSGYATGGNELSNSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSSPQGMEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNA*****************GISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQRSKHGNLFLWHISSFRVKVK
Disordered Region (DISPRO)
*******************************************************************NSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCEL**********************KCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQ********************************ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA********************KHGNLFLWHISSFRVKVK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYGQSQSMNISSQMSGGGAAADEDDVSVAADDHHLSYDPHSALENGIVVVEDVAHDSGYATGGNELSNSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSSPQGMEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQRSKHGNLFLWHISSFRVKVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	275	2.2.26 [Sep-21-2011]
Q9LRH6	309	GATA transcription factor	yes	no	0.901	0.802	0.528	5e-67
Q8H1G0	302	GATA transcription factor	no	no	0.785	0.715	0.509	5e-55
Q8GXL7	297	GATA transcription factor	no	no	0.647	0.599	0.579	4e-53
Q8L500	468	Two-component response re	no	no	0.432	0.254	0.338	8e-09
Q93WK5	727	Two-component response re	no	no	0.152	0.057	0.595	3e-07
Q689G9	518	Two-component response re	no	no	0.152	0.081	0.595	9e-07
Q689G6	623	Two-component response re	no	no	0.152	0.067	0.571	2e-06
Q6LA42	558	Two-component response re	no	no	0.152	0.075	0.547	3e-06
Q00858	457	Cutinase gene palindrome-	N/A	no	0.149	0.089	0.534	6e-06
B0G188	695	GATA zinc finger domain-c	yes	no	0.127	0.050	0.567	7e-06

>sp|Q9LRH6|GAT25_ARATH GATA transcription factor 25 OS=Arabidopsis thaliana GN=GATA25 PE=2 SV=2

 Score =  254 bits (649), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 140/265 (52%), Positives = 175/265 (66%), Gaps = 17/265 (6%)

Query: 1   MYGQSQSMNISSQMSGGGAAADEDDVSVAADDHHLSYD-------PHSALENGIVVVEDV 53
           M+G+  S+  ++Q+    A+A ED VS +A   H+ YD       P S       ++ D 
Sbjct: 1   MFGR-HSIIPNNQIGTASASAGEDHVSASATSGHIPYDDMEEIPHPDSIYGAASDLIPDG 59

Query: 54  AHDSGYATGGNEL------SNSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGG-CELSSS 106
           +    + + G+EL        ++QLT+SFRGQVYVFD+V  DKV AVL LLGG  EL+  
Sbjct: 60  SQLVAHRSDGSELLVSRPPEGANQLTISFRGQVYVFDAVGADKVDAVLSLLGGSTELAPG 119

Query: 107 PQGMEVIPH-SQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQ 165
           PQ ME+    +   + +Y ++C+ PQRA SLDRFR+KR  RCF+KKVRY VRQEVALRM 
Sbjct: 120 PQVMELAQQQNHMPVVEYQSRCSLPQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMA 179

Query: 166 RNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLC 225
           RNKGQFTS+K  +G A      QD  QDD+  E SCTHCGISSK TPMMRRGPSGPR+LC
Sbjct: 180 RNKGQFTSSKMTDG-AYNSGTDQDSAQDDAHPEISCTHCGISSKCTPMMRRGPSGPRTLC 238

Query: 226 NACGLFWANKGALRDLGKKMEDQPL 250
           NACGLFWAN+G LRDL KK E+  L
Sbjct: 239 NACGLFWANRGTLRDLSKKTEENQL 263

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1G0|GAT28_ARATH GATA transcription factor 28 OS=Arabidopsis thaliana GN=GATA28 PE=2 SV=1

 Score =  214 bits (545), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 130/255 (50%), Positives = 157/255 (61%), Gaps = 39/255 (15%)

Query: 26  VSVAADDHHLSYDPHSA--LENGIVVVEDVAHDSGYATG-------------GNELSN-- 68
           +  A D  H+ ++ H+   + NG  +V+D A D G A G             GN   N  
Sbjct: 13  IREAQDPMHVQFEHHALHHIHNGSGMVDDQA-DDGNAGGMSEGVETDIPSHPGNVTDNRG 71

Query: 69  ---------SSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCEL-SSSPQGMEVIPHSQR 118
                      QLTLSF+GQVYVFDSV P+KVQAVLLLLGG EL  ++P G+   PH   
Sbjct: 72  EVVDRGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGS-PHQNN 130

Query: 119 GIADYPA---KCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAK 175
            ++  P    + + PQR ASL RFR+KRK R FDKK+RY+VR+EVALRMQRNKGQFTSAK
Sbjct: 131 RVSSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAK 190

Query: 176 KC--EGGALG--WSNAQDPGQDDSPS---ETSCTHCGISSKSTPMMRRGPSGPRSLCNAC 228
               E  + G  W + Q    + S +   E SC HCGI  KSTPMMRRGP+GPR+LCNAC
Sbjct: 191 SNNDEAASAGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNAC 250

Query: 229 GLFWANKGALRDLGK 243
           GL WANKGA RDL K
Sbjct: 251 GLMWANKGAFRDLSK 265

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXL7|GAT24_ARATH GATA transcription factor 24 OS=Arabidopsis thaliana GN=GATA24 PE=2 SV=2

 Score =  208 bits (529), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 109/188 (57%), Positives = 128/188 (68%), Gaps = 10/188 (5%)

Query: 66  LSNSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSSPQGMEVIPHSQR---GIAD 122
           + N  QLTLSF+GQVYVFD V+P+KVQAVLLLLGG E+  +       PH      G++ 
Sbjct: 74  IENGDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSG 133

Query: 123 YPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKC--EGG 180
            P + + PQR ASL RFR+KRK R FDK +RY+VR+EVALRMQR KGQFTSAK    + G
Sbjct: 134 TPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSG 193

Query: 181 ALG--WSNAQD---PGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANK 235
           + G  W + Q     G +    E  C HCG S KSTPMMRRGP GPR+LCNACGL WANK
Sbjct: 194 STGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANK 253

Query: 236 GALRDLGK 243
           G LRDL K
Sbjct: 254 GTLRDLSK 261

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L500|APRR9_ARATH Two-component response regulator-like APRR9 OS=Arabidopsis thaliana GN=APRR9 PE=2 SV=2

 Score = 61.2 bits (147), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 14/133 (10%)

Query: 53  VAHDSGYATGGNELSNSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSSPQGMEV 112
           V  D G AT  +   N    ++SFR QV +  +VT  K  + + +    E ++S +    
Sbjct: 326 VTSDQGSATTSSNQENIGSSSVSFRNQV-LQSTVTNQKQDSPIPVESNREKAASKEVEAG 384

Query: 113 IPHSQRGIADYPAKCTQP-------------QRAASLDRFRQKRKERCFDKKVRYSVRQE 159
              +  GIA   +   +P             QR A+L +FR KRK+RCFDKKVRY  R++
Sbjct: 385 SQSTNEGIAGQSSSTEKPKEEESAKQRWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKK 444

Query: 160 VALRMQRNKGQFT 172
           +A +  R KGQF 
Sbjct: 445 LAEQRPRVKGQFV 457

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WK5|APRR7_ARATH Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 131 QRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFT 172
           QR A+L +FRQKRKERCF KKVRY  R+++A +  R +GQF 
Sbjct: 668 QREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFV 709

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

>sp|Q689G9|PRR1_ORYSJ Two-component response regulator-like PRR1 OS=Oryza sativa subsp. japonica GN=PRR1 PE=2 SV=2

 Score = 54.3 bits (129), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 131 QRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFT 172
           +RAA+L +FR KRKERCFDKKVRY  R+++A    R +GQF 
Sbjct: 442 RRAAALAKFRLKRKERCFDKKVRYVNRKKLAETRPRVRGQFV 483

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q689G6|PRR95_ORYSJ Two-component response regulator-like PRR95 OS=Oryza sativa subsp. japonica GN=PRR95 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 32/42 (76%)

Query: 131 QRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFT 172
           QR A+L++FR KRK+RCF+KKVRY  R+ +A +  R KGQF 
Sbjct: 573 QREAALNKFRLKRKDRCFEKKVRYQSRKLLAEQRPRVKGQFV 614

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6LA42|APRR5_ARATH Two-component response regulator-like APRR5 OS=Arabidopsis thaliana GN=APRR5 PE=1 SV=2

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 32/42 (76%)

Query: 131 QRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFT 172
           QR A+L +FR KRK+RC++KKVRY  R+++A +  R KGQF 
Sbjct: 508 QREAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKGQFV 549

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

>sp|Q00858|CGPB_FUSSO Cutinase gene palindrome-binding protein OS=Fusarium solani subsp. pisi PE=2 SV=1

 Score = 51.6 bits (122), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 2/43 (4%)

Query: 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRD 240
           E  CT CG  +  +P  R+GPSGP++LCNACGL WA K   R+
Sbjct: 399 EYVCTDCG--TLDSPEWRKGPSGPKTLCNACGLRWAKKEKKRN 439

Binds a palindromic promoter element essential for induction of fungal cutinase gene.

Fusarium solani subsp. pisi (taxid: 70791)

>sp|B0G188|GTAP_DICDI GATA zinc finger domain-containing protein 16 OS=Dictyostelium discoideum GN=gtaP PE=4 SV=1

 Score = 51.6 bits (122), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 28/37 (75%), Gaps = 2/37 (5%)

Query: 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWA 233
           +E SC  CG+++  TP  RRGP+G ++LCNACGL WA
Sbjct: 475 TELSCHTCGVTN--TPEWRRGPNGAKTLCNACGLAWA 509

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
255572876	324	GATA transcription factor, putative [Ric	0.850	0.722	0.662	6e-86
356552974	307	PREDICTED: GATA transcription factor 25-	0.92	0.824	0.658	7e-86
356498865	310	PREDICTED: GATA transcription factor 25-	0.901	0.8	0.657	5e-85
224067118	290	predicted protein [Populus trichocarpa]	0.894	0.848	0.623	8e-85
224084544	288	predicted protein [Populus trichocarpa]	0.909	0.868	0.637	9e-85
225459060	294	PREDICTED: GATA transcription factor 25	0.901	0.843	0.593	2e-82
302398803	306	GATA domain class transcription factor [	0.883	0.794	0.619	5e-80
363808184	286	uncharacterized protein LOC100784789 [Gl	0.825	0.793	0.656	1e-79
356510132	309	PREDICTED: GATA transcription factor 25-	0.8	0.711	0.673	9e-79
449469795	293	PREDICTED: GATA transcription factor 25-	0.952	0.894	0.560	4e-76

>gi|255572876|ref|XP_002527370.1| GATA transcription factor, putative [Ricinus communis] gi|223533289|gb|EEF35042.1| GATA transcription factor, putative [Ricinus communis]

 Score =  323 bits (827), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 165/249 (66%), Positives = 191/249 (76%), Gaps = 15/249 (6%)

Query: 1   MYGQSQSMNISSQMSGGGAAADEDDVSVAADD---HHLSYDPHSALENGIVVVEDVAHDS 57
           MY  SQSMN+  Q+        +D+  VAAD    HH+ Y+  +A   G+V+ +DV+HDS
Sbjct: 1   MYSHSQSMNVHHQIHTPTGPTGDDEDGVAADSIDHHHIRYEDGNA--TGVVLEDDVSHDS 58

Query: 58  GY---ATGGNELS-----NSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSSPQG 109
            Y   +  G+EL+      SSQLTL+FRGQVYVFD+VTPDKVQAVLLLLGGCEL+S P G
Sbjct: 59  VYVPTSAAGSELAIQGNDVSSQLTLTFRGQVYVFDAVTPDKVQAVLLLLGGCELTSGPHG 118

Query: 110 MEVIPHSQR-GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNK 168
           +EV   +QR  + DYP +CTQPQRAASL+RFRQKRKER FDKKVRYSVRQEVALRMQRNK
Sbjct: 119 LEVASQNQRSAVVDYPGRCTQPQRAASLNRFRQKRKERNFDKKVRYSVRQEVALRMQRNK 178

Query: 169 GQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNAC 228
           GQFTS+KK +G   GW   QD GQDDS  ETSCTHCG SSKSTPMMRRGPSGPRSLCNAC
Sbjct: 179 GQFTSSKKSDG-TYGWGGGQDSGQDDSQQETSCTHCGTSSKSTPMMRRGPSGPRSLCNAC 237

Query: 229 GLFWANKGA 237
           GLFWAN+G+
Sbjct: 238 GLFWANRGS 246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552974|ref|XP_003544834.1| PREDICTED: GATA transcription factor 25-like [Glycine max]

 Score =  323 bits (827), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 170/258 (65%), Positives = 196/258 (75%), Gaps = 5/258 (1%)

Query: 1   MYGQSQSMNISSQMSGGGAAADE-DDVSVAADDHHLSYDPHSALENGIVVVEDVAHDSGY 59
           MYG SQ +++ SQ+ GG +     ++ +V    HH+ Y+ H+  +   VVVEDV  D+ Y
Sbjct: 6   MYGHSQPLSMPSQIGGGESDDGSGNEHAVDGHHHHIQYETHALEDGAAVVVEDVTSDAVY 65

Query: 60  ATGGNELSNSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSS--SPQGMEVIPHSQ 117
            +GG     SSQLTLSFRGQVYVFD+VTPDKVQAVLLLLGGCELSS  SP       H+Q
Sbjct: 66  VSGGGGPVESSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGCELSSGGSPCVDPGAQHNQ 125

Query: 118 RGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKC 177
           RG  ++P KC+ P RAASL RFRQKRKERCFDKKVRYSVRQEVALRM RNKGQFTS+KK 
Sbjct: 126 RGSMEFP-KCSLPHRAASLHRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKK- 183

Query: 178 EGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 237
           + GA  +   QD GQDDS SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWAN+GA
Sbjct: 184 QDGANSYGTDQDSGQDDSQSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGA 243

Query: 238 LRDLGKKMEDQPLTPAEQ 255
           LRDL K+ ++  L P EQ
Sbjct: 244 LRDLSKRNQEHSLPPVEQ 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498865|ref|XP_003518268.1| PREDICTED: GATA transcription factor 25-like [Glycine max]

 Score =  320 bits (819), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 175/266 (65%), Positives = 197/266 (74%), Gaps = 18/266 (6%)

Query: 1   MYGQSQSMNISSQMSGGGAAADEDDVS-----VAADDHHLSYDPHSALENGI----VVVE 51
           MYG SQ +NI S++  G    + DD S     V    HH+ Y+ H AL++G     VVVE
Sbjct: 6   MYGPSQPLNIPSRIGAG----ERDDGSGNEPAVDGHHHHIQYETH-ALDDGAAGGAVVVE 60

Query: 52  DVAHDSGYATGGNELSNSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSS--SPQG 109
           DV  D+ Y +GG     SSQLTLSFRGQVYVFD+VTPDKVQAVLLLLGGCELSS  SP  
Sbjct: 61  DVTSDAVYVSGGGGPEESSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGCELSSGGSPCV 120

Query: 110 MEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKG 169
                 +QRG  ++P KC+ PQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRM RNKG
Sbjct: 121 DPGAQQNQRGSMEFP-KCSLPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMHRNKG 179

Query: 170 QFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACG 229
           QFTS+KK + GA  +   QD GQDDS SETSC HCG SSKSTPMMRRGPSGPRSLCNACG
Sbjct: 180 QFTSSKK-QDGANSYGTDQDSGQDDSQSETSCKHCGTSSKSTPMMRRGPSGPRSLCNACG 238

Query: 230 LFWANKGALRDLGKKMEDQPLTPAEQ 255
           LFWAN+GALRDL K+ ++  L P EQ
Sbjct: 239 LFWANRGALRDLSKRNQEHSLPPVEQ 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067118|ref|XP_002302364.1| predicted protein [Populus trichocarpa] gi|222844090|gb|EEE81637.1| predicted protein [Populus trichocarpa]

 Score =  319 bits (817), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 172/276 (62%), Positives = 190/276 (68%), Gaps = 30/276 (10%)

Query: 1   MYGQSQSMNISSQMSGGGAAADEDDVSVAADDHHLSYDP-----HSALENGI--VVVEDV 53
           MY  SQ MN+ +Q+           VS   DD     DP     H   E+G   VVVEDV
Sbjct: 1   MYTPSQPMNVHNQI-----------VSPGVDDDGAPADPIDHHHHIHYEDGTPAVVVEDV 49

Query: 54  AHDSGYATGGNELSN--------SSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSS 105
           + DS Y T G   S         SSQLTL+FRGQVYVFDSVTPDKVQAVLLLLGGCEL+ 
Sbjct: 50  SPDSVYVTAGVAASELGIQPSDGSSQLTLTFRGQVYVFDSVTPDKVQAVLLLLGGCELTP 109

Query: 106 SPQGMEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQ 165
              G+E+ P +QRG+ +YP +CTQPQRAASL RFRQKRKERCFDKKVRY VRQEVALRMQ
Sbjct: 110 ---GLELTPQNQRGVGEYPPRCTQPQRAASLSRFRQKRKERCFDKKVRYGVRQEVALRMQ 166

Query: 166 RNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLC 225
           RNKGQFTSAKK EGG  GW   QD  QDDS  ETSCTHCG +SKSTPMMRRGPSGPRSLC
Sbjct: 167 RNKGQFTSAKKSEGG-YGWDGGQDSAQDDSQHETSCTHCGTNSKSTPMMRRGPSGPRSLC 225

Query: 226 NACGLFWANKGALRDLGKKMEDQPLTPAEQRSKHGN 261
           NACGLFWAN+G LRD  KK  +  + P +      N
Sbjct: 226 NACGLFWANRGTLRDHSKKALEHSVAPIDLGETEAN 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084544|ref|XP_002307332.1| predicted protein [Populus trichocarpa] gi|222856781|gb|EEE94328.1| predicted protein [Populus trichocarpa]

 Score =  319 bits (817), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 172/270 (63%), Positives = 192/270 (71%), Gaps = 20/270 (7%)

Query: 1   MYGQSQSMNISSQMSGGGAAADEDDVSVAADDHHLSYDPHSALENGI-VVVEDVAHDSGY 59
           MY  SQ MN+ +Q++  G     DD    AD   + +  H   E+G   VV+DV+ +S Y
Sbjct: 1   MYTHSQPMNVHNQIASPGV----DDDRAPAD--SIDHHHHIHYEDGTPTVVDDVSPESVY 54

Query: 60  ATGGNELSN--------SSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSSPQGME 111
              G   S         SSQLTL+FRGQVYVFDSVTPDKVQAVLLLLGGCEL+    G+E
Sbjct: 55  VNAGVAASELGIQPSDCSSQLTLTFRGQVYVFDSVTPDKVQAVLLLLGGCELTP---GLE 111

Query: 112 VIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQF 171
           + P +QRG+ DYP++CTQPQRAASL RFRQKRKERCFDKKVRY VRQEVALRMQRNKGQF
Sbjct: 112 MTPQNQRGVVDYPSRCTQPQRAASLSRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQF 171

Query: 172 TSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 231
           TSAKK EGG  GW   QD G DDS  ETSCTHCG +SKSTPMMRRGPSGPRSLCNACGLF
Sbjct: 172 TSAKKSEGG-YGWDGVQDSGLDDSQQETSCTHCGTNSKSTPMMRRGPSGPRSLCNACGLF 230

Query: 232 WANKGALRDLGKKMEDQPLTPAEQRSKHGN 261
           WAN+G LRDL KK  D   T  EQ     N
Sbjct: 231 WANRGTLRDLTKKT-DHSATLIEQGEAEAN 259

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459060|ref|XP_002283753.1| PREDICTED: GATA transcription factor 25 [Vitis vinifera]

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 158/266 (59%), Positives = 196/266 (73%), Gaps = 18/266 (6%)

Query: 1   MYGQSQSMNISSQMSGGGAAADEDD--VSVAADDHHLSYDPHSALENGIV----VVEDVA 54
           MYG  Q M++ +Q++G     D+DD   S + D+ H+ YD H  L++G+V    V  DV 
Sbjct: 1   MYGHPQHMSMHNQIAG-----DDDDGAASESIDNPHVHYDAH-VLQDGVVPGMEVAGDVP 54

Query: 55  HDSGYATGGNELS-----NSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSSPQG 109
            D+ Y   G+E++      ++QLTLSFRGQVYVFDSVT +KV++VLLLLG  ELSS    
Sbjct: 55  SDAVYVADGSEVALQPSDATNQLTLSFRGQVYVFDSVTHEKVRSVLLLLGTPELSSIAHN 114

Query: 110 MEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKG 169
           ME++P +QR + D+P    QP RAASL+RFRQKRKERCFDKK+RY+VRQEVALRMQRNKG
Sbjct: 115 MEIVPQNQRALTDFPGPYNQPHRAASLNRFRQKRKERCFDKKIRYNVRQEVALRMQRNKG 174

Query: 170 QFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACG 229
           QF+S+KK E G   W + QD GQD+SP ET CTHCG SSKSTPMMRRGP+GPRSLCNACG
Sbjct: 175 QFSSSKKSE-GTFSWDSVQDSGQDESPPETLCTHCGTSSKSTPMMRRGPTGPRSLCNACG 233

Query: 230 LFWANKGALRDLGKKMEDQPLTPAEQ 255
           LFWAN+G+LRDL KK +D  L   E+
Sbjct: 234 LFWANRGSLRDLSKKNQDHSLNQIER 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398803|gb|ADL36696.1| GATA domain class transcription factor [Malus x domestica]

 Score =  303 bits (776), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 158/255 (61%), Positives = 189/255 (74%), Gaps = 12/255 (4%)

Query: 1   MYGQSQSMNISSQMSGGGAAADEDDVSVAADDHHLSYDPHSALENGIVVVEDVAHDSGYA 60
           MYG SQ M + + +       D+   + + D+ H+ YD H+  + GIVVVEDV+ D  Y 
Sbjct: 14  MYGHSQDMTMPNPIPA--CDDDDAGAADSIDNAHIQYDSHTLEDGGIVVVEDVSSDGVYV 71

Query: 61  TGGNELSN--------SSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSSPQGMEV 112
            GG+  S         SSQLTLSFRGQV+VFD+VTP+KVQAVLLLLGG ELS S QG E+
Sbjct: 72  QGGSASSELRGPPYDGSSQLTLSFRGQVFVFDAVTPEKVQAVLLLLGGNELSPSAQGTEL 131

Query: 113 IPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFT 172
              +QR + DYP +C+QP RAASL RFRQKRKERCFDKKVRY VRQEVALRMQRNKGQF+
Sbjct: 132 ASQNQRAMEDYP-RCSQPHRAASLIRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFS 190

Query: 173 SAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFW 232
           S+K+ +G +  WS  Q+ GQ+D  +ETSC HCGISSKSTPMMRRGPSGPRSLCNACGLFW
Sbjct: 191 SSKRSDGDS-NWSAGQESGQEDCHAETSCKHCGISSKSTPMMRRGPSGPRSLCNACGLFW 249

Query: 233 ANKGALRDLGKKMED 247
           AN+G LR+L K+  D
Sbjct: 250 ANRGGLRELSKRSHD 264

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808184|ref|NP_001242484.1| uncharacterized protein LOC100784789 [Glycine max] gi|255641630|gb|ACU21087.1| unknown [Glycine max]

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 153/233 (65%), Positives = 177/233 (75%), Gaps = 6/233 (2%)

Query: 23  EDDVSVAADDHHLSYDPHSALENGIVVVEDVAHDSGYATGGNELSNSSQLTLSFRGQVYV 82
           EDD   AA DHH+ Y  H+  E+G   VE+V   S        +++SSQLT+SFRGQVYV
Sbjct: 31  EDDG--AASDHHIHYSSHTIEEDGGATVEEV---SAVPPLEISINDSSQLTISFRGQVYV 85

Query: 83  FDSVTPDKVQAVLLLLGGCELSSSPQGMEVIPHSQRGIADYPAKCTQPQRAASLDRFRQK 142
           FD+VTPDKVQAVLLLLGG EL+S  Q  E+   +Q G  +YPAKC+ PQRAASL+RFRQK
Sbjct: 86  FDAVTPDKVQAVLLLLGGNELTSGSQCAELSSQNQTGEEEYPAKCSLPQRAASLNRFRQK 145

Query: 143 RKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCT 202
           RKERCFDKKVRYSVRQEVALRM RN+GQFTS+K  + G   W + Q+ GQD   SET CT
Sbjct: 146 RKERCFDKKVRYSVRQEVALRMHRNRGQFTSSKN-QDGTNSWGSDQESGQDAVQSETLCT 204

Query: 203 HCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQ 255
           HCGISSKSTPMMRRGPSGPRSLCNACGLFWAN+G LRDL K+ ++  L P EQ
Sbjct: 205 HCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQEHSLAPPEQ 257

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510132|ref|XP_003523794.1| PREDICTED: GATA transcription factor 25-like [Glycine max]

 Score =  299 bits (765), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 155/230 (67%), Positives = 176/230 (76%), Gaps = 10/230 (4%)

Query: 29  AADDHHLSYDPHSALENGIVVVEDVAHDSGYATGGNELS--NSSQLTLSFRGQVYVFDSV 86
           AA DHH+ Y  H+  ++G   VEDV+     A  G E+S  NSSQLTLSFRGQVYVFD+V
Sbjct: 53  AASDHHIHYSSHTIEDDG-AAVEDVS-----AVPGPEISIDNSSQLTLSFRGQVYVFDAV 106

Query: 87  TPDKVQAVLLLLGGCELSSSPQGMEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKER 146
           TPDKVQAVLLLLGG EL+S  Q  E+   +Q G  +YPAKC+ P RAASL+RFRQKRKER
Sbjct: 107 TPDKVQAVLLLLGGNELTSGSQCAELSSRNQTGEEEYPAKCSLPHRAASLNRFRQKRKER 166

Query: 147 CFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSET-SCTHCG 205
           CFDKKVRYSVRQEVALRM RNKGQFTS+K  + G   W + Q+ GQD   SET  CTHCG
Sbjct: 167 CFDKKVRYSVRQEVALRMHRNKGQFTSSKN-QDGTNSWGSDQESGQDAVQSETLCCTHCG 225

Query: 206 ISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQ 255
           ISSKSTPMMR+GPSGPRSLCNACGLFWAN+G LRDL K+  +  LTP EQ
Sbjct: 226 ISSKSTPMMRKGPSGPRSLCNACGLFWANRGTLRDLSKRNLEHSLTPPEQ 275

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469795|ref|XP_004152604.1| PREDICTED: GATA transcription factor 25-like [Cucumis sativus] gi|449511422|ref|XP_004163952.1| PREDICTED: GATA transcription factor 25-like [Cucumis sativus]

 Score =  290 bits (743), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 162/289 (56%), Positives = 203/289 (70%), Gaps = 27/289 (9%)

Query: 1   MYGQSQSMNISSQMSGGGAAADEDDVSVAADDHHLSYDPHSALENGIVVVED---VAHDS 57
           MY ++Q + +  Q+      AD  D     D+  + Y  HS LE+G+ V      +  D+
Sbjct: 1   MYARAQPLTMGDQI------ADCSDTGEPLDNRLVRYGAHS-LEDGVGVGGMVEVLNPDA 53

Query: 58  GY--ATGGNELS-----NSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSSPQGM 110
            Y  A  G++L+      S+QLTLSFRGQVY+FD+V+P+KVQAVLLLLGGCELSS  Q +
Sbjct: 54  VYVPAGDGSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSV 113

Query: 111 EVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQ 170
           +++  +QR   D P + +QPQRAASL+RFRQKRKERCF+KKVRY VRQEVALRMQRNKGQ
Sbjct: 114 DLVNPNQRNALDLPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALRMQRNKGQ 173

Query: 171 FTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 230
           FTS+KK + G+    N  + GQD+SPSETSCT+CGISS STPMMRRGPSGPRSLCNACGL
Sbjct: 174 FTSSKKLD-GSYSHGNVSELGQDESPSETSCTNCGISSMSTPMMRRGPSGPRSLCNACGL 232

Query: 231 FWANKGALRDLGKKMEDQPLTPAEQ---------RSKHGNLFLWHISSF 270
           FWAN+G LRDL K+ +D P+TPAEQ           +HGN    ++ SF
Sbjct: 233 FWANRGTLRDLPKRSQDHPVTPAEQCESDGGKDLDCRHGNHAPSNLVSF 281

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
TAIR|locus:2017582	302	ZML2 "ZIM-LIKE 2" [Arabidopsis	0.647	0.589	0.562	2.3e-46
TAIR|locus:505006360	297	ZML1 "ZIM-like 1" [Arabidopsis	0.672	0.622	0.532	1.3e-45
TAIR|locus:2062749	183	AT2G46670 "AT2G46670" [Arabido	0.429	0.644	0.318	4.9e-08
TAIR|locus:2083388	149	GATA15 "GATA transcription fac	0.229	0.422	0.397	1.1e-06
TAIR|locus:2044376	468	PRR9 "pseudo-response regulato	0.429	0.252	0.325	1.2e-06
CGD|CAL0003020	688	GAT1 [Candida albicans (taxid:	0.356	0.142	0.327	2.4e-05
UNIPROTKB|Q5A432	688	GAT1 "Putative uncharacterized	0.356	0.142	0.327	2.4e-05
TAIR|locus:2155919	139	GATA16 "GATA transcription fac	0.16	0.316	0.469	2.5e-05
TAIR|locus:2151206	727	PRR7 "pseudo-response regulato	0.149	0.056	0.609	3.4e-05
CGD|CAL0005605	442	orf19.1577 [Candida albicans (	0.167	0.104	0.509	3.7e-05

TAIR|locus:2017582 ZML2 "ZIM-LIKE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 108/192 (56%), Positives = 126/192 (65%)

Query:    63 GNELSNSSQLTLSFRGQVYVFDSVTPDKVQAVXXXXXXXXX-XXXPQGMEVIPHSQRGIA 121
             G+E     QLTLSF+GQVYVFDSV P+KVQAV             P G+   PH    ++
Sbjct:    77 GSE--QGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGS-PHQNNRVS 133

Query:   122 DYPA---KCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKC- 177
               P    + + PQR ASL RFR+KRK R FDKK+RY+VR+EVALRMQRNKGQFTSAK   
Sbjct:   134 SLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNN 193

Query:   178 -EGGALG--WSNAQDPGQDDSPS---ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 231
              E  + G  W + Q    + S +   E SC HCGI  KSTPMMRRGP+GPR+LCNACGL 
Sbjct:   194 DEAASAGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGLM 253

Query:   232 WANKGALRDLGK 243
             WANKGA RDL K
Sbjct:   254 WANKGAFRDLSK 265

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:505006360 ZML1 "ZIM-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 105/197 (53%), Positives = 122/197 (61%)

Query:    66 LSNSSQLTLSFRGQVYVFDSVTPDKVQAVXXXXXXXXXXXXPQGMEVIPHSQR---GIAD 122
             + N  QLTLSF+GQVYVFD V+P+KVQAV                   PH      G++ 
Sbjct:    74 IENGDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSG 133

Query:   123 YPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKC--EGG 180
              P + + PQR ASL RFR+KRK R FDK +RY+VR+EVALRMQR KGQFTSAK    + G
Sbjct:   134 TPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSG 193

Query:   181 ALG--WSNAQD---PGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANK 235
             + G  W + Q     G +    E  C HCG S KSTPMMRRGP GPR+LCNACGL WANK
Sbjct:   194 STGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANK 253

Query:   236 GALRDLGKKMEDQPLTP 252
             G LRDL K     P TP
Sbjct:   254 GTLRDLSKV--PPPQTP 268

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2062749 AT2G46670 "AT2G46670" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 4.9e-08, P = 4.9e-08
 Identities = 42/132 (31%), Positives = 60/132 (45%)

Query:    53 VAHDSGYATGGNELSNSSQLTLSFRGQVYVFDSVTPDKVQAVXXXXXXXXXXXXPQGMEV 112
             V  D G +T  +   N    ++SFR QV +  +VT  K  +              +    
Sbjct:    41 VRSDQGSSTTSSNQENIGSSSVSFRNQV-LQSTVTNQKQDSPIPVESNREKAASKEVEAG 99

Query:   113 IPHSQRGIADYPAKCTQP-------------QRAASLDRFRQKRKERCFDKKVRYSVRQE 159
                +  GIA   +   +P             QR A+L +FR KRK+RCFDKKVRY  R++
Sbjct:   100 SQSTNEGIAGQSSSTEKPKEEESAKQRWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKK 159

Query:   160 VALRMQRNKGQF 171
             +A +  R KGQF
Sbjct:   160 LAEQRPRVKGQF 171

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083388 GATA15 "GATA transcription factor 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 27/68 (39%), Positives = 37/68 (54%)

Query:   195 SPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDL-GKKMEDQPLTPA 253
             S  + SC  CG S   TP+ R GP+GP+SLCNACG+   N+   R L   + ED+     
Sbjct:    37 SNEKKSCAICGTSK--TPLWRGGPAGPKSLCNACGI--RNRKKRRTLISNRSEDKKKKSH 92

Query:   254 EQRSKHGN 261
              +  K G+
Sbjct:    93 NRNPKFGD 100

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2044376 PRR9 "pseudo-response regulator 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 43/132 (32%), Positives = 60/132 (45%)

Query:    53 VAHDSGYATGGNELSNSSQLTLSFRGQVYVFDSVTPDKVQAVXXXXXXXXXXXXPQGMEV 112
             V  D G AT  +   N    ++SFR QV +  +VT  K  +              +    
Sbjct:   326 VTSDQGSATTSSNQENIGSSSVSFRNQV-LQSTVTNQKQDSPIPVESNREKAASKEVEAG 384

Query:   113 IPHSQRGIADYPAKCTQP-------------QRAASLDRFRQKRKERCFDKKVRYSVRQE 159
                +  GIA   +   +P             QR A+L +FR KRK+RCFDKKVRY  R++
Sbjct:   385 SQSTNEGIAGQSSSTEKPKEEESAKQRWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKK 444

Query:   160 VALRMQRNKGQF 171
             +A +  R KGQF
Sbjct:   445 LAEQRPRVKGQF 456

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0007623 "circadian rhythm" evidence=IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009266 "response to temperature stimulus" evidence=IGI

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0003677 "DNA binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

CGD|CAL0003020 GAT1 [Candida albicans (taxid:5476)]

 Score = 127 (49.8 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 35/107 (32%), Positives = 50/107 (46%)

Query:   140 RQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSET 199
             + KRK     K  + +   E  +    + G   + K     + G   A  P    S +  
Sbjct:   383 KSKRKST-ITKSKKKAASPETTIT---STGSTITTKSTNSNSTGKGTATGPAA--SNTGV 436

Query:   200 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKME 246
             SCT+CG  +K+TP+ RR P G + LCNACGLF    G +R L  K +
Sbjct:   437 SCTNCG--TKTTPLWRRNPQG-QPLCNACGLFLKLHGVVRPLSLKTD 480

GO:0009405 "pathogenesis" evidence=IMP

GO:0006808 "regulation of nitrogen utilization" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0001080 "nitrogen catabolite activation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001076 "RNA polymerase II transcription factor binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IEA

UNIPROTKB|Q5A432 GAT1 "Putative uncharacterized protein GAT1" [Candida albicans SC5314 (taxid:237561)]

 Score = 127 (49.8 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 35/107 (32%), Positives = 50/107 (46%)

Query:   140 RQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSET 199
             + KRK     K  + +   E  +    + G   + K     + G   A  P    S +  
Sbjct:   383 KSKRKST-ITKSKKKAASPETTIT---STGSTITTKSTNSNSTGKGTATGPAA--SNTGV 436

Query:   200 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKME 246
             SCT+CG  +K+TP+ RR P G + LCNACGLF    G +R L  K +
Sbjct:   437 SCTNCG--TKTTPLWRRNPQG-QPLCNACGLFLKLHGVVRPLSLKTD 480

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0006808 "regulation of nitrogen utilization" evidence=IMP

GO:0009405 "pathogenesis" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

TAIR|locus:2155919 GATA16 "GATA transcription factor 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 23/49 (46%), Positives = 29/49 (59%)

Query:   200 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANK--GALRDLGKKME 246
             +C  CG S   TP+ R GP GP+SLCNACG+    K  G   D  KK++
Sbjct:    37 TCADCGTSK--TPLWRGGPVGPKSLCNACGIRNRKKRRGGTED-NKKLK 82

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2151206 PRR7 "pseudo-response regulator 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 25/41 (60%), Positives = 32/41 (78%)

Query:   131 QRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQF 171
             QR A+L +FRQKRKERCF KKVRY  R+++A +  R +GQF
Sbjct:   668 QREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQF 708

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0007623 "circadian rhythm" evidence=IMP;TAS

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0009266 "response to temperature stimulus" evidence=IGI

GO:0003677 "DNA binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009639 "response to red or far red light" evidence=RCA

GO:0042752 "regulation of circadian rhythm" evidence=RCA

GO:0048574 "long-day photoperiodism, flowering" evidence=RCA

CGD|CAL0005605 orf19.1577 [Candida albicans (taxid:5476)]

 Score = 123 (48.4 bits), Expect = 3.7e-05, P = 3.7e-05
 Identities = 26/51 (50%), Positives = 32/51 (62%)

Query:   198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWAN---KGALRDLGKKM 245
             E +C HC   S+ TP  RRGP G R+LCNACGLF++    K  LR+  K M
Sbjct:   379 EITCQHC--CSQETPEWRRGPEGSRTLCNACGLFYSKLIKKYGLREADKVM 427

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LRH6	GAT25_ARATH	No assigned EC number	0.5283	0.9018	0.8025	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00021024 hypothetical protein (291 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	275
pfam06203	45	pfam06203, CCT, CCT motif	5e-18
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	2e-13
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	8e-13
pfam00320	36	pfam00320, GATA, GATA zinc finger	2e-12
pfam06200	36	pfam06200, tify, tify domain	3e-11
smart00979	36	smart00979, TIFY, This short possible domain is fo	2e-10

>gnl|CDD|203407 pfam06203, CCT, CCT motif

 Score = 75.3 bits (186), Expect = 5e-18
 Identities = 21/44 (47%), Positives = 29/44 (65%)

Query: 132 RAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAK 175
           R A+L R+++KRK R FDKK+RY+ R+ VA    R KG+F    
Sbjct: 1   REAALLRYKEKRKTRKFDKKIRYASRKAVAESRPRVKGRFVKQS 44

This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Length = 45

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 63.2 bits (154), Expect = 2e-13
 Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 2/44 (4%)

Query: 196 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALR 239
            S  SC++CG  +  TP+ RRGPSG ++LCNACGL++   G L+
Sbjct: 1   GSGRSCSNCG--TTETPLWRRGPSGNKTLCNACGLYYKKHGGLK 42

Length = 52

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 61.6 bits (150), Expect = 8e-13
 Identities = 25/49 (51%), Positives = 36/49 (73%), Gaps = 2/49 (4%)

Query: 200 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQ 248
           +C++CG  + +TP+ RRGPSG  +LCNACGL+W   G +R L K+ +DQ
Sbjct: 1   ACSNCG--TTTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKRKKDQ 47

Length = 54

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 59.6 bits (145), Expect = 2e-12
 Identities = 19/36 (52%), Positives = 26/36 (72%), Gaps = 2/36 (5%)

Query: 201 CTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKG 236
           C++CG  +  TP+ RRGP G R+LCNACGL++   G
Sbjct: 1   CSNCG--TTKTPLWRRGPDGNRTLCNACGLYYRKHG 34

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|203405 pfam06200, tify, tify domain

 Score = 56.7 bits (138), Expect = 3e-11
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 67  SNSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGG 100
           + S+QLT+ + GQV VFD V P+K Q ++ L   
Sbjct: 3   AESAQLTIFYGGQVCVFDDVPPEKAQEIMRLASR 36

This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs. Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

>gnl|CDD|198047 smart00979, TIFY, This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs

 Score = 54.6 bits (132), Expect = 2e-10
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 67  SNSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGG 100
             S QLT+ + G V VFD V P+K Q ++ L G 
Sbjct: 3   EGSQQLTIFYGGSVCVFDDVPPEKAQEIMSLAGN 36

Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	275
PF06200	36	tify: tify domain; InterPro: IPR010399 The tify do	99.7
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.59
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.56
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.47
PF09425	27	CCT_2: Divergent CCT motif; InterPro: IPR018467 Th	99.06
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	98.95
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	98.71
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	98.35
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	90.85
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	84.93

>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants)

Probab=99.70  E-value=1.7e-17  Score=110.72  Aligned_cols=35  Identities=46%  Similarity=0.731  Sum_probs=32.6

Q ss_pred             CCCCcceeEEeCCEEEEecCCChHHHHHHHHHhcC
Q 023942           66 LSNSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGG  100 (275)
Q Consensus        66 ~~~~~QLTIfY~G~V~Vfd~V~~dKaq~Im~lA~~  100 (275)
                      .+.++||||||+|+|+|||+||+|||++||+||+.
T Consensus         2 ~~~~~qLTIfY~G~V~Vfd~v~~~Ka~~im~lA~r   36 (36)
T PF06200_consen    2 SPETAQLTIFYGGQVCVFDDVPPDKAQEIMLLASR   36 (36)
T ss_pred             CCCCCcEEEEECCEEEEeCCCCHHHHHHHHHHhcC
Confidence            36789999999999999999999999999999973

It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.59  E-value=6.8e-16  Score=111.47  Aligned_cols=44  Identities=52%  Similarity=1.258  Sum_probs=41.9

Q ss_pred             cceeecccCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCCCC
Q 023942          200 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKM  245 (275)
Q Consensus       200 ~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~~r~~~~k~  245 (275)
                      .|+||+++  .||+||+||.+..+|||||||||++++..||..+..
T Consensus         1 ~C~~C~~~--~Tp~WR~g~~~~~~LCNaCgl~~~k~~~~rp~~~~~   44 (54)
T cd00202           1 ACSNCGTT--TTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKRK   44 (54)
T ss_pred             CCCCCCCC--CCcccccCCCCcchHHHHHHHHHHhcCCCCCcccCc
Confidence            59999998  999999999888999999999999999999999877

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.56  E-value=1.8e-15  Score=108.32  Aligned_cols=48  Identities=52%  Similarity=1.112  Sum_probs=43.8

Q ss_pred             CCccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCCC-CCCCCCCC
Q 023942          197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGAL-RDLGKKME  246 (275)
Q Consensus       197 ~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~~-r~~~~k~~  246 (275)
                      ....|+||+++  .||+||+||.|..+|||||||||++++.+ ||..+.++
T Consensus         2 ~~~~C~~C~~~--~T~~WR~g~~g~~~LCnaCgl~~~k~~~~~rp~~~~~~   50 (52)
T smart00401        2 SGRSCSNCGTT--ETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLSLKKD   50 (52)
T ss_pred             CCCCcCCCCCC--CCCccccCCCCCCcEeecccHHHHHcCCCCCccccccc
Confidence            35789999998  99999999999889999999999999998 88887765

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.47  E-value=8.9e-15  Score=97.38  Aligned_cols=36  Identities=53%  Similarity=1.278  Sum_probs=28.6

Q ss_pred             ceeecccCCCCCceecCCCCCCccchhhhhHHHhcCCC
Q 023942          201 CTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGAL  238 (275)
Q Consensus       201 C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~~  238 (275)
                      |+||+++  .||+||+||.|..+|||||||+|++++++
T Consensus         1 C~~C~tt--~t~~WR~~~~g~~~LCn~Cg~~~kk~~~~   36 (36)
T PF00320_consen    1 CSNCGTT--ETPQWRRGPNGNRTLCNACGLYYKKYGKM   36 (36)
T ss_dssp             -TTT--S--T-SSEEEETTSEE-EEHHHHHHHHHHSS-
T ss_pred             CcCCcCC--CCchhhcCCCCCCHHHHHHHHHHHHhCCC
Confidence            8999999  99999999999888999999999999863

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1

Probab=99.06  E-value=5.4e-11  Score=74.61  Aligned_cols=24  Identities=50%  Similarity=0.674  Sum_probs=10.0

Q ss_pred             hHHHHHHHHHhhhhhhhcccchhhh
Q 023942          131 QRAASLDRFRQKRKERCFDKKVRYS  155 (275)
Q Consensus       131 aRkASLqRFlEKRKeR~f~kk~pY~  155 (275)
                      +|++||||||||||+|+++ ++||.
T Consensus         3 aRK~SLqRFLeKRK~R~~~-~~PY~   26 (27)
T PF09425_consen    3 ARKASLQRFLEKRKDRLAA-KSPYQ   26 (27)
T ss_dssp             ---HHHHHHHHHH------------
T ss_pred             hHHHHHHHHHHHHHHhhcc-CCCCC
Confidence            8999999999999999987 78996

The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=98.95  E-value=4.5e-10  Score=78.53  Aligned_cols=43  Identities=47%  Similarity=0.779  Sum_probs=41.2

Q ss_pred             HHHHHHHHHhhhhhhhcccchhhhhHHHHHHHhhhhccccccc
Q 023942          132 RAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSA  174 (275)
Q Consensus       132 RkASLqRFlEKRKeR~f~kk~pY~~rkeva~Rm~RekGQF~ss  174 (275)
                      |.++|+||+|||+.|+|.+++.|.+|+.+|+.++|.+|+|+..
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~   43 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKK   43 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCC
Confidence            6789999999999999999999999999999999999999874

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=98.71  E-value=9.6e-09  Score=89.48  Aligned_cols=47  Identities=49%  Similarity=1.009  Sum_probs=42.5

Q ss_pred             CccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCCCCC
Q 023942          198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKME  246 (275)
Q Consensus       198 ~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~~r~~~~k~~  246 (275)
                      ...|.+|+++  .||+||++|.|+..+|||||++|++++..|++.+++.
T Consensus       199 ~~~c~~~~~~--~t~~~r~~~~g~~~~cnacgl~~k~~~~~r~~~~~~~  245 (340)
T KOG1601|consen  199 LRQCSNCGTT--KTPLWRRGPEGPKSLCNACGLRYKKGGVRRPLPEKRP  245 (340)
T ss_pred             CcccCCCCCC--CCcceecCCCCCccccccchhhhhhcCccccccccCc
Confidence            5899999998  9999999999999999999999999987777777665

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=98.35  E-value=1.8e-07  Score=93.58  Aligned_cols=52  Identities=37%  Similarity=0.729  Sum_probs=45.5

Q ss_pred             CCCccceeecccCCCCCceecCCC-----CCCccchhhhhHHHhcCCCC-CCCCCCCCCCC
Q 023942          196 PSETSCTHCGISSKSTPMMRRGPS-----GPRSLCNACGLFWANKGALR-DLGKKMEDQPL  250 (275)
Q Consensus       196 ~~~~~C~~Cgtt~~~Tp~WRrGp~-----G~~~LCNACGl~~~~~~~~r-~~~~k~~~~~~  250 (275)
                      .....|.||.++  .||+|||+..     | -.|||||||+++.|+++| |+++|..-+..
T Consensus       156 ~~~~vc~Nc~t~--stPlwrR~~~~~s~~~-n~lcnaCgl~~klhg~~r~P~t~ks~~~ks  213 (498)
T COG5641         156 NQPHVCSNCKTT--STPLWRRASSESSLPG-NNLCNACGLYLKLHGSPRAPISLKSDSIKS  213 (498)
T ss_pred             cccchhcccccc--CCccccccccccccCC-ccccccccccccccCCcCCCcccccccccc
Confidence            344599999998  9999999999     6 699999999999999999 99998874443

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=90.85  E-value=0.12  Score=52.52  Aligned_cols=53  Identities=28%  Similarity=0.360  Sum_probs=44.6

Q ss_pred             CCCccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCCCCCCCC
Q 023942          196 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQP  249 (275)
Q Consensus       196 ~~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~~r~~~~k~~~~~  249 (275)
                      +....|.+|++. +.||.||+...-.-++||+||++.+..+..+|+..|.+...
T Consensus       295 ps~~~~s~~~~~-~~tp~~~r~~~~~s~~~n~~~~~~~~~~~~~p~~pk~d~n~  347 (498)
T COG5641         295 PSDKKRSTLTTS-TATPLWRRTSDKSSFSCNASGSALKPPGSKRPLLPKPDPNS  347 (498)
T ss_pred             hhhcCccccccc-ccCcccccccccccccccccccccCCcccccccCCCCChhh
Confidence            446689999985 58999999887778999999999999999999988766443

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=84.93  E-value=1.9  Score=43.86  Aligned_cols=39  Identities=23%  Similarity=0.609  Sum_probs=31.3

Q ss_pred             CccceeecccCCCCCceec--CCCCCCccchhhhhHHHhcCCC
Q 023942          198 ETSCTHCGISSKSTPMMRR--GPSGPRSLCNACGLFWANKGAL  238 (275)
Q Consensus       198 ~~~C~~Cgtt~~~Tp~WRr--Gp~G~~~LCNACGl~~~~~~~~  238 (275)
                      .+.|.+|+|+  ..-+|=.  +|.-...||--|=+||++.|-+
T Consensus       386 g~~CEsC~tt--qs~qWYsWGppnmqcrLCasCWiyWKKygGL  426 (693)
T KOG3554|consen  386 GRACESCYTT--QSLQWYSWGPPNMQCRLCASCWIYWKKYGGL  426 (693)
T ss_pred             CCcccccccc--cccceeccCCCCccchhhHHHHHHHHHhcCc
Confidence            7799999998  7777744  5555558999999999998853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	275
4gat_A	66	Solution Nmr Structure Of The Wild Type Dna Binding		1e-04
7gat_A	66	Solution Nmr Structure Of The L22v Mutant Dna Bindi		2e-04
2vus_I	43	Crystal Structure Of Unliganded Nmra-Area Zinc Fing		2e-04

>pdb|4GAT|A Chain A, Solution Nmr Structure Of The Wild Type Dna Binding Domain Of Area Complexed To A 13bp Dna Containing A Cgata Site, Regularized Mean Structure Length = 66

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 191 GQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKME 246
           G+ + P  T+CT+C   +++TP+ RR P G + LCNACGLF    G +R L  K +
Sbjct: 4   GEQNGP--TTCTNC--FTQTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLSLKTD 54

>pdb|7GAT|A Chain A, Solution Nmr Structure Of The L22v Mutant Dna Binding Domain Of Area Complexed To A 13 Bp Dna Containing A Tgata Site, 34 Structures Length = 66

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 191 GQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKME 246
           G+ + P  T+CT+C   +++TP+ RR P G + LCNACGLF    G +R L  K +
Sbjct: 4   GEQNGP--TTCTNC--FTQTTPVWRRNPEG-QPLCNACGLFLKLHGVVRPLSLKTD 54

>pdb|2VUS|I Chain I, Crystal Structure Of Unliganded Nmra-Area Zinc Finger Complex Length = 43

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 199 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDL 241
           T+CT+C   +++TP+ RR P G + LCNACGLF    G +R L
Sbjct: 2   TTCTNC--FTQTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPL 41

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	275
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	2e-11
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	3e-10
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	7e-09
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	3e-08
3dfx_A	63	Trans-acting T-cell-specific transcription factor	2e-07

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 57.6 bits (139), Expect = 2e-11
 Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 2/49 (4%)

Query: 191 GQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALR 239
           G   +     C++C      T   R   S     CNAC ++       R
Sbjct: 1   GSHMNKKSFQCSNCS--VTETIRWRNIRSKEGIQCNACFIYQRKYNKTR 47

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 53.6 bits (129), Expect = 3e-10
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 196 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGK 243
                C +CG  + +TP+ RR  +G   LCNACGL+    G  R L +
Sbjct: 2   SEARECVNCG--ATATPLWRRDRTG-HYLCNACGLYHKMNGQNRPLIR 46

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 49.8 bits (119), Expect = 7e-09
 Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 199 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALR 239
           T+CT+C   +++TP+ RR P G + LCNACGLF    G +R
Sbjct: 2   TTCTNCF--TQTTPLWRRNPEG-QPLCNACGLFLKLHGVVR 39

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 48.5 bits (115), Expect = 3e-08
 Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 3/46 (6%)

Query: 199 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKK 244
           T+CT+C   +++TP+ RR P G + LCNACGLF    G +R L  K
Sbjct: 10  TTCTNCF--TQTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLSLK 52

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 46.2 bits (109), Expect = 2e-07
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 195 SPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKK 244
             + TSC +C   + +T + RR  +G   +CNACGL++      R L  K
Sbjct: 4   RRAGTSCANCQ--TTTTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMK 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	275
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.73
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.72
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.72
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.7
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.63
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.56
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.47
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	98.89
3ogk_Q	22	JAZ1 incomplete degron peptide; leucine rich repea	98.87

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.73  E-value=1.5e-18  Score=127.91  Aligned_cols=55  Identities=33%  Similarity=0.624  Sum_probs=49.1

Q ss_pred             CCCCccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCCCCCCCCCCc
Q 023942          195 SPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTP  252 (275)
Q Consensus       195 ~~~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~~r~~~~k~~~~~~~~  252 (275)
                      ......|+||+++  .||+||+||+|+ +|||||||||++++..||++++++.+....
T Consensus         4 ~~~~~~C~~C~tt--~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~~~i~~R~   58 (63)
T 3dfx_A            4 RRAGTSCANCQTT--TTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKKEGIQTRN   58 (63)
T ss_dssp             CCTTCCCTTTCCS--CCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC
T ss_pred             CCCCCcCCCcCCC--CCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCCCcccccc
Confidence            4567789999999  999999999997 999999999999999999999988666543

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.72  E-value=1.5e-18  Score=119.02  Aligned_cols=42  Identities=50%  Similarity=0.991  Sum_probs=39.9

Q ss_pred             ccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCC
Q 023942          199 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGK  243 (275)
Q Consensus       199 ~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~~r~~~~  243 (275)
                      ..|++|+++  .||+||+||+|+ +|||||||||++|+++||++|
T Consensus         2 ~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~l   43 (43)
T 2vut_I            2 TTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSL   43 (43)
T ss_dssp             CCCSSSCCC--CCSCCEECTTSC-EECHHHHHHHHHHSSCCCCCC
T ss_pred             CcCCccCCC--CCCccccCCCCC-cccHHHHHHHHHhCCCCCCCC
Confidence            579999998  999999999996 999999999999999999975

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.72  E-value=2.7e-18  Score=119.34  Aligned_cols=44  Identities=41%  Similarity=0.866  Sum_probs=41.1

Q ss_pred             CCccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCC
Q 023942          197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGK  243 (275)
Q Consensus       197 ~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~~r~~~~  243 (275)
                      ....|+||+++  .||+||+||+|+ +|||||||||++++++||+++
T Consensus         3 ~~~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~   46 (46)
T 1gnf_A            3 EARECVNCGAT--ATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR   46 (46)
T ss_dssp             CSCCCTTTCCC--CCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred             CCCCCCCcCCC--CCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence            46789999998  999999999996 999999999999999999975

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.70  E-value=5.4e-18  Score=126.06  Aligned_cols=52  Identities=42%  Similarity=0.785  Sum_probs=47.0

Q ss_pred             CCccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCCCCCCCCCC
Q 023942          197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLT  251 (275)
Q Consensus       197 ~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~~r~~~~k~~~~~~~  251 (275)
                      ....|+||+++  .||+||+||+|. +|||||||||++++++||++++++.+...
T Consensus         8 ~~~~C~~C~t~--~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R   59 (66)
T 4gat_A            8 GPTTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKR   59 (66)
T ss_dssp             SSCCCTTTCCC--CCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCC
T ss_pred             CCCCCCCCCCC--CCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhcccccccc
Confidence            56889999998  999999999996 99999999999999999999988755433

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.63  E-value=7e-18  Score=127.07  Aligned_cols=49  Identities=20%  Similarity=0.336  Sum_probs=41.8

Q ss_pred             CCCccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCCCCC
Q 023942          196 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKME  246 (275)
Q Consensus       196 ~~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~~r~~~~k~~  246 (275)
                      .....|+||+|+  .||+||+||.+..+|||||||||+++++.||++++++
T Consensus         6 ~~~~~C~nC~tt--~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~~   54 (71)
T 2kae_A            6 KKSFQCSNCSVT--ETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNK   54 (71)
T ss_dssp             --CCCCSSSCCS--CCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHHH
T ss_pred             CCCCcCCccCCC--CCCccccCCCCCCccchHHHHHHHHhCCCCCcccchh
Confidence            457889999999  9999999544444999999999999999999998765

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.56  E-value=1.3e-15  Score=124.25  Aligned_cols=53  Identities=34%  Similarity=0.657  Sum_probs=48.3

Q ss_pred             CCCccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCCCCCCCCCC
Q 023942          196 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLT  251 (275)
Q Consensus       196 ~~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~~r~~~~k~~~~~~~  251 (275)
                      .....|+||+++  .||+||+||+| ++|||||||||++|+..||++++++.+...
T Consensus        57 ~~~~~C~~C~t~--~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r  109 (115)
T 4hc9_A           57 RAGTSCANCQTT--TTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTR  109 (115)
T ss_dssp             CTTCCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCC
T ss_pred             cccccCCCcCCC--CcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhc
Confidence            346789999998  99999999999 899999999999999999999998876654

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.47  E-value=2.5e-14  Score=116.62  Aligned_cols=69  Identities=32%  Similarity=0.589  Sum_probs=56.6

Q ss_pred             CCccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCCCCCCCC----CCcccccccccceeeeEee
Q 023942          197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQP----LTPAEQRSKHGNLFLWHIS  268 (275)
Q Consensus       197 ~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~~r~~~~k~~~~~----~~~~~~~~~~~~~~l~~~~  268 (275)
                      ....|.||+++  .||+||+||+| .+|||||||||+.++.+||+.+.+....    .......++.....+|-..
T Consensus         4 ~~~~C~~Cg~~--~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~tp~WRr~   76 (115)
T 4hc9_A            4 MGRECVNCGAT--STPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRN   76 (115)
T ss_dssp             --CCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCCSSCEEC
T ss_pred             CCCCCCCCCCc--cCCcceECCCC-CCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCcceeEEC
Confidence            46789999998  99999999999 6999999999999999999987665333    2356677888888898753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	275
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	8e-12
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	2e-10
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	6e-09

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 56.7 bits (137), Expect = 8e-12
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 3/43 (6%)

Query: 199 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDL 241
           T+CT+C   +++TP+ RR P G + LCNACGLF    G +R L
Sbjct: 1   TTCTNCF--TQTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPL 40

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.8 bits (127), Expect = 2e-10
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 200 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKG 236
            C +CG  + +TP+ RR  +G   LCNACGL+    G
Sbjct: 4   ECVNCG--ATATPLWRRDRTG-HYLCNACGLYHKMNG 37

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.2 bits (117), Expect = 6e-09
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 199 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKME 246
           T C++C   + +T + RR P G   +CNACGL++      R L  + +
Sbjct: 5   TVCSNCQ--TSTTTLWRRSPMG-DPVCNACGLYYKLHQVNRPLTMRKD 49

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	275
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.77
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.73
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.7

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.77  E-value=3.5e-20  Score=124.52  Aligned_cols=41  Identities=49%  Similarity=1.009  Sum_probs=39.3

Q ss_pred             cceeecccCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCC
Q 023942          200 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGK  243 (275)
Q Consensus       200 ~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~~r~~~~  243 (275)
                      .|+||+++  .||+||+||+| ++|||||||||++|+++||++|
T Consensus         2 ~C~nC~tt--~Tp~WRr~~~G-~~lCNACGl~~k~~g~~RP~sl   42 (42)
T d2vuti1           2 TCTNCFTQ--TTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLSL   42 (42)
T ss_dssp             CCSSSCCC--CCSCCEECTTS-CEECHHHHHHHHHHSSCCCCCC
T ss_pred             cCCCCCCC--CCccceeCCCC-CCchhhhhHHHHHcCCCCCCCC
Confidence            69999998  99999999999 6999999999999999999986

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.73  E-value=7.5e-19  Score=128.86  Aligned_cols=53  Identities=32%  Similarity=0.666  Sum_probs=46.9

Q ss_pred             CCccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCCCCCCCCCCc
Q 023942          197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTP  252 (275)
Q Consensus       197 ~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~~r~~~~k~~~~~~~~  252 (275)
                      ....|+||+++  .||+||+||.| .+|||||||||+++++.||+.++++-+....
T Consensus         3 ~g~~C~nCgt~--~Tp~WRr~~~G-~~lCNACGl~~~~~~~~RP~~~~~~~i~~r~   55 (66)
T d3gata_           3 AGTVCSNCQTS--TTTLWRRSPMG-DPVCNACGLYYKLHQVNRPLTMRKDGIQTRN   55 (66)
T ss_dssp             TTCCCTTTCCC--CCSSEEECTTS-CEEEHHHHHHHHHHCSCCCGGGCCSSCCCCS
T ss_pred             CCCCCCCCCCC--CCcccccCCCC-CcccchhHHHHHHhCCcCCcccccccccccc
Confidence            35679999998  99999999999 6999999999999999999999887655443

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=2.2e-18  Score=114.02  Aligned_cols=38  Identities=42%  Similarity=0.961  Sum_probs=35.1

Q ss_pred             CccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCCC
Q 023942          198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGAL  238 (275)
Q Consensus       198 ~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~~  238 (275)
                      .+.|+||+++  .||+||+||+| ++|||||||||++||+.
T Consensus         2 ~r~C~~Cgtt--~Tp~WR~gp~G-~~LCNACGl~~r~~G~n   39 (39)
T d1y0ja1           2 ARECVNCGAT--ATPLWRRDRTG-HYLCNACGLYHKMNGQN   39 (39)
T ss_dssp             CCCCSSSCCC--CCSCCEECTTS-CEECSSHHHHHHHSCCC
T ss_pred             cCCCCCCCCC--CCcccccCCCC-CEeeHHhHHHHHHhCCC
Confidence            5689999998  99999999999 69999999999999863