Citrus Sinensis ID: 023943

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
MASLVGQLPFALENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIADYFFKSNLAEDFSLADIQVNTCQL
cccccccccccccccccccccccccccccccccccccccccccHHHHHccccccHHHHHHHHHHHHcccccccEEccccEEEEEEEcccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccEEEEEEEEcccccccccEEEEEccccEEEEEEEccEEEEEcccccccccccccccccccccccccEEEEEEEEEccccHHcccccccccccccEEEEEEEccccEEEEEEEcccccccccEEEEEEEEEc
ccHHHHHcHHHHHHHHccccccccHHHHcccccccccccccccHHHHHHccccccHHHHHHHHHHHcccccccHEEccccEEEEEccccccccHHHccccccccccEEEEccEEcccccccccEEEccccccccccccccccccEEEEEEEEcccHHHccccEEEEccccEcEEEEEEccEEEEEccccccccEEEcccccccccccccEEEEEEEEccccHHHHEcccEEEccEEccccEEEEEccccEEEEEccEEEcccccEEEEcEEEEEc
maslvgqlpfalenangykvwedpsfikwrkrdphvtlrchdsvevsnsavwdddAVHEALTSAAfwtnglpfvkslsghwkfflassppdvplnfhkssfqdskweaipvpsnwqmhgfdrpiytnvvypfpldppnvpaenptgcyrtyfhipkewqgrRILLHFEAVDSAFCAwingvpvgysqdsrlpaefeisdycyphgsdkknvLAVQVFrwsdgsyledqdhwwlsgIHRDVLLLAKPQVFIADYFfksnlaedfsladIQVNTCQL
MASLVGQLPfalenangykvwedpsfikwrkrdphVTLRCHDSVEVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIADYFFKSNLAEDFSLADIQVNTCQL
MASLVGQLPFALENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIADYFFKSNLAEDFSLADIQVNTCQL
*****GQLPFALENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIADYFFKSNLAEDFSLADIQVN****
********PF****ANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIADYFFKSNLAEDFSLADIQVNTCQL
MASLVGQLPFALENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIADYFFKSNLAEDFSLADIQVNTCQL
MASLVGQLPFALENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIADYFFKSNLAEDFSLADIQVNTCQL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASLVGQLPFALENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIADYFFKSNLAEDFSLADIQVNTCQL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query275 2.2.26 [Sep-21-2011]
A5F5U6 1024 Beta-galactosidase OS=Vib yes no 0.832 0.223 0.448 3e-54
A1SWB8 1035 Beta-galactosidase OS=Psy yes no 0.745 0.198 0.516 1e-52
Q56307 1084 Beta-galactosidase OS=The yes no 0.687 0.174 0.5 1e-52
Q7MG04 1031 Beta-galactosidase OS=Vib yes no 0.650 0.173 0.550 5e-52
Q8D4H3 1032 Beta-galactosidase OS=Vib yes no 0.650 0.173 0.540 6e-51
B4S2K9 1041 Beta-galactosidase OS=Alt yes no 0.698 0.184 0.522 1e-50
Q6LL68 1030 Beta-galactosidase OS=Pho yes no 0.658 0.175 0.545 3e-50
A4W7D2 1028 Beta-galactosidase OS=Ent yes no 0.865 0.231 0.429 7e-50
P81650 1039 Beta-galactosidase OS=Pse yes no 0.709 0.187 0.529 8e-50
A3FEW8 1028 Beta-galactosidase OS=Ent N/A no 0.865 0.231 0.425 5e-49
>sp|A5F5U6|BGAL_VIBC3 Beta-galactosidase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=lacZ PE=3 SV=2 Back     alignment and function desciption
 Score =  211 bits (538), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 113/252 (44%), Positives = 146/252 (57%), Gaps = 23/252 (9%)

Query: 21  WEDPSFIKWRKRDPHVTLRCHDSVEVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGH 80
           W++P  +KW  R PHV L  + + + +   V  +                    +SL+G 
Sbjct: 13  WQNPHIVKWHCRTPHVPLHSYRTEQEARLDVGGNR-------------------QSLNGQ 53

Query: 81  WKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVP 140
           W+F L   P  V        F DS W  IPVPSNWQM GFD+PIYTN+ YPF   PP VP
Sbjct: 54  WRFALFEKPEAVEPAVIDPDFDDSAWAHIPVPSNWQMQGFDKPIYTNIQYPFADRPPYVP 113

Query: 141 AENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDY 200
            +NPTGCYR  F + K+     I + F+ V+SAF  W NG  VGYSQDSRLPAEFE++  
Sbjct: 114 QDNPTGCYRHRFTLEKQALTESIRIVFDGVNSAFHLWCNGHWVGYSQDSRLPAEFELT-- 171

Query: 201 CYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIADYFFKSNLA 260
             P+  + +N+L   V RWSDGSYLEDQD WWLSGI RDV L  KP + I D+F ++ L 
Sbjct: 172 --PYLQEGENLLVAMVLRWSDGSYLEDQDMWWLSGIFRDVYLYRKPILAIEDFFIRTELD 229

Query: 261 EDFSLADIQVNT 272
             +  A+++V T
Sbjct: 230 ALYQHAELRVET 241

Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) (taxid: 345073)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 3
>sp|A1SWB8|BGAL_PSYIN Beta-galactosidase OS=Psychromonas ingrahamii (strain 37) GN=lacZ PE=3 SV=1 Back     alignment and function description
>sp|Q56307|BGAL_THEMA Beta-galactosidase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=lacZ PE=3 SV=2 Back     alignment and function description
>sp|Q7MG04|BGAL_VIBVY Beta-galactosidase OS=Vibrio vulnificus (strain YJ016) GN=lacZ PE=3 SV=1 Back     alignment and function description
>sp|Q8D4H3|BGAL_VIBVU Beta-galactosidase OS=Vibrio vulnificus (strain CMCP6) GN=lacZ PE=3 SV=2 Back     alignment and function description
>sp|B4S2K9|BGAL_ALTMD Beta-galactosidase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=lacZ PE=3 SV=1 Back     alignment and function description
>sp|Q6LL68|BGAL_PHOPR Beta-galactosidase OS=Photobacterium profundum GN=lacZ PE=3 SV=1 Back     alignment and function description
>sp|A4W7D2|BGAL_ENT38 Beta-galactosidase OS=Enterobacter sp. (strain 638) GN=lacZ PE=3 SV=1 Back     alignment and function description
>sp|P81650|BGAL_PSEHA Beta-galactosidase OS=Pseudoalteromonas haloplanktis GN=lacZ PE=1 SV=2 Back     alignment and function description
>sp|A3FEW8|BGAL_ENTAG Beta-galactosidase OS=Enterobacter agglomerans GN=lacZ PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query275
225465868 1114 PREDICTED: beta-galactosidase isoform 1 0.981 0.242 0.749 1e-122
359495000 1127 PREDICTED: beta-galactosidase [Vitis vin 0.974 0.237 0.724 1e-121
224057302 1110 predicted protein [Populus trichocarpa] 0.974 0.241 0.743 1e-121
255543993 1110 beta-galactosidase, putative [Ricinus co 0.981 0.243 0.742 1e-121
357515121 1118 Beta Galactosidase-like protein [Medicag 0.970 0.238 0.75 1e-120
356548875 1120 PREDICTED: beta-galactosidase-like [Glyc 0.978 0.240 0.735 1e-120
297820190 1107 hydrolase, hydrolyzing O-glycosyl compou 0.974 0.242 0.747 1e-118
79314957 1108 beta-galactosidase [Arabidopsis thaliana 0.974 0.241 0.743 1e-118
22331783 1107 beta-galactosidase [Arabidopsis thaliana 0.974 0.242 0.743 1e-118
110741846 631 beta Galactosidase - like protein [Arabi 0.981 0.427 0.738 1e-118
>gi|225465868|ref|XP_002266400.1| PREDICTED: beta-galactosidase isoform 1 [Vitis vinifera] gi|296090332|emb|CBI40151.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/287 (74%), Positives = 236/287 (82%), Gaps = 17/287 (5%)

Query: 1   MASLVGQLPFALENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVE--------------- 45
           MASLV QL F  +     +VWEDPSFIKWRK+D HV+L CHD+VE               
Sbjct: 1   MASLVAQLAFPSDYNR--RVWEDPSFIKWRKKDAHVSLHCHDTVEGSLRYWYERNKVDFI 58

Query: 46  VSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSK 105
            S+SAVW+DDAV  AL  AAFW  GLPFVKSLSG+WKF+LA  P  VP+NF+ SSF+DS 
Sbjct: 59  ASSSAVWNDDAVVGALDCAAFWVKGLPFVKSLSGYWKFYLAPGPTSVPMNFYDSSFEDST 118

Query: 106 WEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILL 165
           WE +PVPSNWQMHGFDRPIYTN+VYPFPLDPP+VP ENPTGCYRT FHIP EW+GRRILL
Sbjct: 119 WETLPVPSNWQMHGFDRPIYTNIVYPFPLDPPHVPTENPTGCYRTVFHIPHEWKGRRILL 178

Query: 166 HFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYL 225
           HFEAVDSAF AWINGVPVGYSQDSRLPAEFEI+DYC+P GS+KKNVLAVQVFRWSDGSYL
Sbjct: 179 HFEAVDSAFFAWINGVPVGYSQDSRLPAEFEITDYCHPCGSNKKNVLAVQVFRWSDGSYL 238

Query: 226 EDQDHWWLSGIHRDVLLLAKPQVFIADYFFKSNLAEDFSLADIQVNT 272
           EDQD WWLSGIHRDVLLLAKPQV+I DYFFKSNL E+FS ADIQV  
Sbjct: 239 EDQDQWWLSGIHRDVLLLAKPQVYIEDYFFKSNLGENFSYADIQVEV 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359495000|ref|XP_003634896.1| PREDICTED: beta-galactosidase [Vitis vinifera] Back     alignment and taxonomy information
>gi|224057302|ref|XP_002299206.1| predicted protein [Populus trichocarpa] gi|222846464|gb|EEE84011.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255543993|ref|XP_002513059.1| beta-galactosidase, putative [Ricinus communis] gi|223548070|gb|EEF49562.1| beta-galactosidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357515121|ref|XP_003627849.1| Beta Galactosidase-like protein [Medicago truncatula] gi|355521871|gb|AET02325.1| Beta Galactosidase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356548875|ref|XP_003542824.1| PREDICTED: beta-galactosidase-like [Glycine max] Back     alignment and taxonomy information
>gi|297820190|ref|XP_002877978.1| hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis lyrata subsp. lyrata] gi|297323816|gb|EFH54237.1| hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79314957|ref|NP_001030858.1| beta-galactosidase [Arabidopsis thaliana] gi|332645710|gb|AEE79231.1| beta-galactosidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|22331783|ref|NP_680128.1| beta-galactosidase [Arabidopsis thaliana] gi|20147224|gb|AAM10327.1| At3g54435 [Arabidopsis thaliana] gi|332645709|gb|AEE79230.1| beta-galactosidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110741846|dbj|BAE98865.1| beta Galactosidase - like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query275
ASPGD|ASPL0000047652 1023 lacF [Emericella nidulans (tax 0.694 0.186 0.472 1e-46
UNIPROTKB|P00722 1024 lacZ "beta-galactosidase monom 0.705 0.189 0.477 1.4e-44
ASPGD|ASPL0000040482 1030 lacD [Emericella nidulans (tax 0.672 0.179 0.446 5.6e-42
UNIPROTKB|P06864 1030 ebgA "evolved beta-D-galactosi 0.727 0.194 0.406 1.1e-34
UNIPROTKB|Q2KEP6197 MGCH7_ch7g990 "Putative unchar 0.545 0.761 0.448 2.5e-33
ASPGD|ASPL0000002919 891 lacE [Emericella nidulans (tax 0.705 0.217 0.237 2.6e-05
UNIPROTKB|P05804 603 uidA "beta-D-glucuronidase" [E 0.44 0.200 0.268 7.4e-05
ASPGD|ASPL0000047652 lacF [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
 Score = 499 (180.7 bits), Expect = 1.0e-46, P = 1.0e-46
 Identities = 93/197 (47%), Positives = 128/197 (64%)

Query:    75 KSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPL 134
             +SL+G WKF   +SP + P+    ++   ++W+ I VP  WQM G+ RP YTN+ YP P+
Sbjct:    54 QSLNGTWKFHYDASPFEAPI---WNTANTTEWDDIIVPGVWQMQGYGRPQYTNIHYPIPV 110

Query:   135 DPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAE 194
              PPNV   NPTG Y   F +P +W G++I L +E VDSAF  W+NG  VGYSQ SR P+E
Sbjct:   111 TPPNVSYMNPTGSYWREFDVPADWDGQQIRLRYEGVDSAFHVWVNGEEVGYSQGSRNPSE 170

Query:   195 FEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIADYF 254
             F+I+ Y    G+   N LA +V++WSDG+YLEDQD WWLSGI RDV L+  P   I D+F
Sbjct:   171 FDITGYLSSEGT---NTLATRVYQWSDGTYLEDQDQWWLSGIFRDVYLVPFPSSAITDFF 227

Query:   255 FKSNLAEDFSLADIQVN 271
              +  + + F+   ++VN
Sbjct:   228 IQPEVDDGFASGTLKVN 244
GO:0005988 "lactose metabolic process" evidence=RCA
GO:0004565 "beta-galactosidase activity" evidence=RCA
GO:0043169 "cation binding" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
GO:0009341 "beta-galactosidase complex" evidence=IEA
UNIPROTKB|P00722 lacZ "beta-galactosidase monomer" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
ASPGD|ASPL0000040482 lacD [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|P06864 ebgA "evolved beta-D-galactosidase, alpha subunit; cryptic gene" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KEP6 MGCH7_ch7g990 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000002919 lacE [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|P05804 uidA "beta-D-glucuronidase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.23LOW CONFIDENCE prediction!
3rd Layer3.2.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_I000259
hypothetical protein (1110 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_X0656
galactokinase (EC-2.7.1.6) (496 aa)
• •  •• 0.931
estExt_fgenesh4_pg.C_LG_VIII0903
SubName- Full=Putative uncharacterized protein; (496 aa)
• •  •• 0.930
gw1.44.267.1
hypothetical protein (643 aa)
     •  0.916
gw1.VI.1302.1
galactokinase (EC-2.7.1.6) (413 aa)
     •• 0.905
estExt_fgenesh4_pm.C_LG_III0678
hypothetical protein (1114 aa)
  •  •••0.901
gw1.XIX.1583.1
alpha-galactosidase (380 aa)
     •  0.899
gw1.X.3030.1
alpha-galactosidase (EC-2.4.1.67) (369 aa)
     •  0.899
fgenesh4_pm.C_LG_IV000085
hypothetical protein (379 aa)
     •  0.899
fgenesh4_pm.C_LG_I000617
hexokinase (508 aa)
     •  0.899
fgenesh4_pg.C_scaffold_164000005
alpha-galactosidase (EC-3.2.1.22) (367 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query275
PRK09525 1027 PRK09525, lacZ, beta-D-galactosidase; Reviewed 2e-81
PRK10340 1021 PRK10340, ebgA, cryptic beta-D-galactosidase subun 3e-69
pfam02837160 pfam02837, Glyco_hydro_2_N, Glycosyl hydrolases fa 2e-65
COG3250 808 COG3250, LacZ, Beta-galactosidase/beta-glucuronida 1e-44
PRK10150 604 PRK10150, PRK10150, beta-D-glucuronidase; Provisio 2e-14
>gnl|CDD|236548 PRK09525, lacZ, beta-D-galactosidase; Reviewed Back     alignment and domain information 
 Score =  264 bits (676), Expect = 2e-81
 Identities = 110/256 (42%), Positives = 146/256 (57%), Gaps = 31/256 (12%)

Query: 21  WEDPSFIKWRKRDPHVTLRCHDSVEVSNSAVWDD-DAVHEALTSAAFWTNGLPFVKSLSG 79
           WE+P   +  +   H              A W + +A  +   S           +SL+G
Sbjct: 17  WENPGVTQLNRLPAHPPF-----------ASWRNSEAARDDRPS--------QQRQSLNG 57

Query: 80  HWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNV 139
            W+F    +P  VP ++ +    D   + IPVPSNWQ+HG+D PIYTNV YP P++PP V
Sbjct: 58  EWRFSYFPAPEAVPESWLECDLPD--ADTIPVPSNWQLHGYDAPIYTNVTYPIPVNPPFV 115

Query: 140 PAENPTGCYRTYFHIPKEW--QGR-RILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFE 196
           P ENPTGCY   F + + W   G+ RI+  F+ V+SAF  W NG  VGYSQDSRLPAEF+
Sbjct: 116 PEENPTGCYSLTFTVDESWLQSGQTRII--FDGVNSAFHLWCNGRWVGYSQDSRLPAEFD 173

Query: 197 ISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIADYFFK 256
           +S +    G   +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP   ++D+   
Sbjct: 174 LSPFLR-AG---ENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQLSDFHIT 229

Query: 257 SNLAEDFSLADIQVNT 272
           + L +DF  A ++V  
Sbjct: 230 TELDDDFRRAVLEVEA 245

Length = 1027
>gnl|CDD|236673 PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed Back     alignment and domain information
>gnl|CDD|217248 pfam02837, Glyco_hydro_2_N, Glycosyl hydrolases family 2, sugar binding domain Back     alignment and domain information
>gnl|CDD|225789 COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|236657 PRK10150, PRK10150, beta-D-glucuronidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 275
PRK09525 1027 lacZ beta-D-galactosidase; Reviewed 100.0
PRK10340 1021 ebgA cryptic beta-D-galactosidase subunit alpha; R 100.0
PRK10150 604 beta-D-glucuronidase; Provisional 100.0
PF02837167 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sug 100.0
COG3250 808 LacZ Beta-galactosidase/beta-glucuronidase [Carboh 99.96
KOG2024297 consensus Beta-Glucuronidase GUSB (glycosylhydrola 99.65
KOG2230 867 consensus Predicted beta-mannosidase [Carbohydrate 99.19
PF13364111 BetaGal_dom4_5: Beta-galactosidase jelly roll doma 97.95
COG3250 808 LacZ Beta-galactosidase/beta-glucuronidase [Carboh 97.93
PLN03059 840 beta-galactosidase; Provisional 97.76
PF08531172 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal d 97.62
PLN03059840 beta-galactosidase; Provisional 96.07
KOG0496 649 consensus Beta-galactosidase [Carbohydrate transpo 95.88
KOG0496649 consensus Beta-galactosidase [Carbohydrate transpo 94.62
PF07691145 PA14: PA14 domain; InterPro: IPR011658 The PA14 do 92.49
PF14683167 CBM-like: Polysaccharide lyase family 4, domain II 91.79
PF03170 605 BcsB: Bacterial cellulose synthase subunit; InterP 88.86
PF0830871 PEGA: PEGA domain; InterPro: IPR013229 This domain 88.41
smart00758136 PA14 domain in bacterial beta-glucosidases other g 88.1
PF03170 605 BcsB: Bacterial cellulose synthase subunit; InterP 86.68
PRK11114 756 cellulose synthase regulator protein; Provisional 85.93
>PRK09525 lacZ beta-D-galactosidase; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=1.2e-58  Score=482.29  Aligned_cols=242  Identities=43%  Similarity=0.804  Sum_probs=221.3

Q ss_pred             ccccccccCCCCCCCCcccccccCCCCCCCccccCChhhhcccCCchhhHHHhhhcccccCCCCCcEEecCccceEEecC
Q 023943            8 LPFALENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLAS   87 (275)
Q Consensus         8 ~~~~~~~~~~~~~w~~p~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LnG~W~F~~~~   87 (275)
                      +|..|.+....++||||+|+++|||||||+|+||++.++|+.         .         ..++..++|||.|+|++.+
T Consensus         4 ~~~~~~~~~~~~~wenp~v~~~nr~~~~a~~~~~~~~~~a~~---------~---------~~s~~~~sLnG~W~F~~~~   65 (1027)
T PRK09525          4 IMDSLAQILARRDWENPGVTQLNRLPAHPPFASWRNSEAARD---------D---------RPSQQRQSLNGEWRFSYFP   65 (1027)
T ss_pred             chhHHHhhhccCCccCccccCCCCCCCCCCcCCcCCHHHHhh---------c---------cCCcceEecCCCcceeECC
Confidence            345555544457999999999999999999999999985432         1         1245789999999999999


Q ss_pred             CCCCCCccccCCCCCCCCCeEeccCcccccccCCCCcccceeccCCCCCCCCcccCCcccEEEEEEcCCCCCCc-eEEEE
Q 023943           88 SPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGR-RILLH  166 (275)
Q Consensus        88 ~~~~~p~~~~~~~~d~~~W~~i~VP~~w~~~g~~~p~y~n~~yp~~~~pp~vp~~n~~g~Yrr~F~lp~~~~~~-~i~L~  166 (275)
                      .+.+.|++|+..++++  |++|+||++|+++|++.++|+|+.|||+.+||++|.+|++|||||+|++|++|+++ +++|+
T Consensus        66 ~~~~~~~~~~~~~~~~--w~~I~VP~~w~~~G~~~~~y~n~~ypf~~~~p~vp~~n~~gwYrr~F~vp~~w~~~~rv~L~  143 (1027)
T PRK09525         66 APEAVPESWLECDLPD--ADTIPVPSNWQLHGYDAPIYTNVTYPIPVNPPFVPEENPTGCYSLTFTVDESWLQSGQTRII  143 (1027)
T ss_pred             ChhhCcccccccCCCC--CcEeCCCCcHHhcCCCCCccccccCCCCCCCCCCCCcCCeEEEEEEEEeChhhcCCCeEEEE
Confidence            9988999999988865  99999999999999999999999999999999999889999999999999999887 99999


Q ss_pred             eCcccceeEEEEcCEEeeeecCCCCCceeccccccccCCCCCceEEEEEEEecCCCCcccCCCCCccccccceeEEEEeC
Q 023943          167 FEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKP  246 (275)
Q Consensus       167 f~gv~s~~~VwvNG~~VG~~~~~~~p~efdIT~~Lk~~~~G~eN~L~V~V~~~~dgs~ledqd~w~~~GI~RdV~L~~~p  246 (275)
                      |+||++.++|||||++||+|+|+|+||+||||++|++   | +|+|+|+|.+|++|+|+++||+|+++||||+|+|+++|
T Consensus       144 FeGV~~~a~VwvNG~~VG~~~g~~~pfefDIT~~l~~---G-~N~L~V~V~~~sdgs~~e~qd~w~~sGI~R~V~L~~~p  219 (1027)
T PRK09525        144 FDGVNSAFHLWCNGRWVGYSQDSRLPAEFDLSPFLRA---G-ENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKP  219 (1027)
T ss_pred             ECeeccEEEEEECCEEEEeecCCCceEEEEChhhhcC---C-ccEEEEEEEecCCCCccccCCceeeccccceEEEEEcC
Confidence            9999999999999999999999999999999999999   9 59999999999999999999999999999999999999


Q ss_pred             CceEEeEEEEEeecCCeeEEEEEEEEe
Q 023943          247 QVFIADYFFKSNLAEDFSLADIQVNTC  273 (275)
Q Consensus       247 ~~~I~D~~v~t~ld~~~~~~~l~v~~~  273 (275)
                      ++||+|++|+++++.++++|+|+|++.
T Consensus       220 ~~~I~d~~v~t~l~~~~~~a~v~v~v~  246 (1027)
T PRK09525        220 TTQLSDFHITTELDDDFRRAVLEVEAQ  246 (1027)
T ss_pred             CcEEeeeEEEeeccCccceEEEEEEEE
Confidence            999999999999998887888877653

>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed Back     alignment and domain information
>PRK10150 beta-D-glucuronidase; Provisional Back     alignment and domain information
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A Back     alignment and domain information
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03059 beta-galactosidase; Provisional Back     alignment and domain information
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition Back     alignment and domain information
>PLN03059 beta-galactosidase; Provisional Back     alignment and domain information
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA) Back     alignment and domain information
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A Back     alignment and domain information
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity [] Back     alignment and domain information
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins Back     alignment and domain information
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins Back     alignment and domain information
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity [] Back     alignment and domain information
>PRK11114 cellulose synthase regulator protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query275
1f49_A 1023 E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained 1e-46
3muz_1 1052 E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex 1e-46
3sep_A 1052 E. Coli (Lacz) Beta-Galactosidase (S796a) Length = 1e-46
3t0a_A 1052 E. Coli (Lacz) Beta-Galactosidase (S796t) Length = 1e-46
3vda_A 1052 E. Coli (Lacz) Beta-Galactosidase (N460t) Length = 1e-46
1bgm_I 1023 Beta-Galactosidase (Chains I-P) Length = 1023 1e-46
3vd5_A 1052 E. Coli (Lacz) Beta-Galactosidase (N460s) Length = 1e-46
3vd3_A 1052 E. Coli (Lacz) Beta-Galactosidase (N460d) Length = 1e-46
3t2o_A 1052 E. Coli (Lacz) Beta-Galactosidase (S796d) Length = 1e-46
1f4a_A 1021 E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained 1e-46
3iaq_A 1023 E. Coli (Lacz) Beta-Galactosidase (E416v) Length = 1e-46
1jz8_A 1023 E. Coli (lacz) Beta-galactosidase (e537q) In Comple 1e-46
3iap_A 1023 E. Coli (Lacz) Beta-Galactosidase (E416q) Length = 1e-46
1dp0_A 1023 E. Coli Beta-Galactosidase At 1.7 Angstrom Length = 2e-46
3dym_A 1023 E. Coli (Lacz) Beta-Galactosidase (H418e) Length = 2e-46
1px3_A 1023 E. Coli (Lacz) Beta-Galactosidase (G794a) Length = 2e-46
3dyo_A 1023 E. Coli (Lacz) Beta-Galactosidase (H418n) In Comple 2e-46
3czj_A 1023 "e. Coli (Lacz) Beta-Galactosidase (N460t) In Compl 2e-46
3i3b_A 1023 E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex 2e-46
3muy_1 1023 E. Coli (Lacz) Beta-Galactosidase (R599a) Length = 2e-46
1jz7_A 1023 E. Coli (Lacz) Beta-Galactosidase In Complex With G 3e-46
3bga_A 1010 Crystal Structure Of Beta-Galactosidase From Bacter 1e-40
3dec_A 1000 Crystal Structure Of A Glycosyl Hydrolases Family 2 4e-40
1yq2_A 1024 Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoe 8e-38
3ob8_A 1032 Structure Of The Beta-Galactosidase From Kluyveromy 1e-29
3k46_A 605 Crystal Structure Of Full-Length E. Coli Beta-Glucu 3e-10
3k4a_A 605 Crystal Structure Of Selenomethionine Substituted E 6e-10
3lpf_A 605 Structure Of E. Coli Beta-Glucuronidase Bound With 6e-10
3gm8_A 801 Crystal Structure Of A Beta-glycosidase From Bacter 1e-07
3cmg_A 667 Crystal Structure Of Putative Beta-Galactosidase Fr 2e-04
>pdb|1F49|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained Monomer- Monoclinic) Length = 1023 Back     alignment and structure 
Iteration: 1

 Score =  182 bits (463), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 9/203 (4%)
Query: 74  VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
           ++SL+G W+F    +P  VP ++ +    ++  + + VPSNWQMHG+D PIYTNV YP  
Sbjct: 51  LRSLNGEWRFAWFPAPEAVPESWLECDLPEA--DTVVVPSNWQMHGYDAPIYTNVTYPIT 108
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLP 192
           ++PP VP ENPTGCY   F++ + W Q  +  + F+ V+SAF  W NG  VGY QDSRLP
Sbjct: 109 VNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLP 168
Query: 193 AEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIAD 252
           +EF++S +        +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP   I+D
Sbjct: 169 SEFDLSAFLRA----GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISD 224
Query: 253 YFFKSNLAEDFSLA--DIQVNTC 273
           +   +   +DFS A  + +V  C
Sbjct: 225 FHVATRFNDDFSRAVLEAEVQMC 247
>pdb|3MUZ|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With Iptg Length = 1052 Back     alignment and structure
>pdb|3SEP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Length = 1052 Back     alignment and structure
>pdb|3T0A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t) Length = 1052 Back     alignment and structure
>pdb|3VDA|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) Length = 1052 Back     alignment and structure
>pdb|1BGM|I Chain I, Beta-Galactosidase (Chains I-P) Length = 1023 Back     alignment and structure
>pdb|3VD5|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s) Length = 1052 Back     alignment and structure
>pdb|3VD3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460d) Length = 1052 Back     alignment and structure
>pdb|3T2O|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) Length = 1052 Back     alignment and structure
>pdb|1F4A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained Monomer- Orthorhombic) Length = 1021 Back     alignment and structure
>pdb|3IAQ|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416v) Length = 1023 Back     alignment and structure
>pdb|1JZ8|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With Allolactose Length = 1023 Back     alignment and structure
>pdb|3IAP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416q) Length = 1023 Back     alignment and structure
>pdb|1DP0|A Chain A, E. Coli Beta-Galactosidase At 1.7 Angstrom Length = 1023 Back     alignment and structure
>pdb|3DYM|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418e) Length = 1023 Back     alignment and structure
>pdb|1PX3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a) Length = 1023 Back     alignment and structure
>pdb|3DYO|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With Iptg Length = 1023 Back     alignment and structure
>pdb|3CZJ|A Chain A, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With D- Galctopyranosyl-1-One" Length = 1023 Back     alignment and structure
>pdb|3I3B|A Chain A, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With D- Galactopyranosyl-1-On Length = 1023 Back     alignment and structure
>pdb|3MUY|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) Length = 1023 Back     alignment and structure
>pdb|1JZ7|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Galactose Length = 1023 Back     alignment and structure
>pdb|3BGA|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacteroides Thetaiotaomicron Vpi-5482 Length = 1010 Back     alignment and structure
>pdb|3DEC|A Chain A, Crystal Structure Of A Glycosyl Hydrolases Family 2 Protein From Bacteroides Thetaiotaomicron Length = 1000 Back     alignment and structure
>pdb|1YQ2|A Chain A, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme C2- 2-1) Length = 1024 Back     alignment and structure
>pdb|3OB8|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces Lactis In Complex With Galactose Length = 1032 Back     alignment and structure
>pdb|3K46|A Chain A, Crystal Structure Of Full-Length E. Coli Beta-Glucuronidase Length = 605 Back     alignment and structure
>pdb|3K4A|A Chain A, Crystal Structure Of Selenomethionine Substituted E. Coli Beta- Glucuronidase Length = 605 Back     alignment and structure
>pdb|3LPF|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A Novel, Potent Inhibitor 1-((6,7-Dimethyl-2-Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)-1- (2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea Length = 605 Back     alignment and structure
>pdb|3GM8|A Chain A, Crystal Structure Of A Beta-glycosidase From Bacteroides Vulgatus Length = 801 Back     alignment and structure
>pdb|3CMG|A Chain A, Crystal Structure Of Putative Beta-Galactosidase From Bacteroides Fragilis Length = 667 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query275
1jz7_A 1023 Lactase, beta-galactosidase, LACZ; TIM barrel (alp 1e-103
3bga_A 1010 Beta-galactosidase; NYSGXRC, protein structure ini 1e-102
3oba_A 1032 Beta-galactosidase; TIM barrel, tetramer, GH2, gly 1e-93
1yq2_A 1024 Beta-galactosidase; glycosyl hydrolase family 2, T 7e-92
3lpf_A 605 Beta-glucuronidase; alpha/beta barrel, sugar-bindi 1e-71
3hn3_A 613 Beta-G1, beta-glucuronidase; lysosomal enzyme, aci 6e-65
3gm8_A 801 Glycoside hydrolase family 2, candidate beta-GLYC; 4e-62
3cmg_A 667 Putative beta-galactosidase; structural genomics, 1e-34
3fn9_A 692 Putative beta-galactosidase; structural genomics, 3e-27
2vzs_A 1032 CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, 1e-25
2je8_A 848 Beta-mannosidase; glycoside hydrolase, hydrolase; 1e-09
>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel), jelly-roll barrel, immunoglobulin, beta supersandwich, hydrolase; HET: GAL; 1.50A {Escherichia coli} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 PDB: 1hn1_A 1jyx_A* 1jz3_A* 1jz4_A* 1jz5_A* 1jz6_A* 1dp0_A* 3iap_A* 1jz8_A* 1jyn_A* 1jyv_A* 1jyw_A* 3iaq_A* 1px3_A 1px4_A* 3czj_A* 3i3e_A 3i3d_A* 3i3b_A 3dym_A ... Length = 1023 Back     alignment and structure
 Score =  321 bits (824), Expect = e-103
 Identities = 100/253 (39%), Positives = 137/253 (54%), Gaps = 25/253 (9%)

Query: 21  WEDPSFIKWRKRDPHVTLRCHDSVEVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGH 80
           WE+P   +  +   H       + E                   A        ++SL+G 
Sbjct: 16  WENPGVTQLNRLAAHPPFASWRNSE------------------EARTDRPSQQLRSLNGE 57

Query: 81  WKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVP 140
           W+F    +P  VP ++ +      + + + VPSNWQMHG+D PIYTNV YP  ++PP VP
Sbjct: 58  WRFAWFPAPEAVPESWLECDL--PEADTVVVPSNWQMHGYDAPIYTNVTYPITVNPPFVP 115

Query: 141 AENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISD 199
            ENPTGCY   F++ + W Q  +  + F+ V+SAF  W NG  VGY QDSRLP+EF++S 
Sbjct: 116 TENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLPSEFDLSA 175

Query: 200 YCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIADYFFKSNL 259
           +        +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP   I+D+   +  
Sbjct: 176 FLRAG----ENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISDFHVATRF 231

Query: 260 AEDFSLADIQVNT 272
            +DFS A ++   
Sbjct: 232 NDDFSRAVLEAEV 244
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II (PSI-II), glycosyl hydrolase family 2, jelly-roll fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB: 3dec_A Length = 1010 Back     alignment and structure
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase, hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A Length = 1032 Back     alignment and structure
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 Length = 1024 Back     alignment and structure
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain, beta-sandwich domai glycosyl hydrolase, glycosida hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB: 3k46_A* 3k4d_A* 3lpg_A* 3k4a_A Length = 605 Back     alignment and structure
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase, glycosidase, disease mutat glycoprotein, hydrolase, lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN GUP; 1.70A {Homo sapiens} PDB: 1bhg_A* Length = 613 Back     alignment and structure
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural genomics, glycosidase, PSI-2, protein initiative; 2.40A {Bacteroides vulgatus} Length = 801 Back     alignment and structure
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis} Length = 667 Back     alignment and structure
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis} Length = 692 Back     alignment and structure
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A* Length = 1032 Back     alignment and structure
>2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A {Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A* 2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A* Length = 848 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query275
3bga_A 1010 Beta-galactosidase; NYSGXRC, protein structure ini 100.0
3oba_A 1032 Beta-galactosidase; TIM barrel, tetramer, GH2, gly 100.0
1jz7_A 1023 Lactase, beta-galactosidase, LACZ; TIM barrel (alp 100.0
1yq2_A 1024 Beta-galactosidase; glycosyl hydrolase family 2, T 100.0
3lpf_A 605 Beta-glucuronidase; alpha/beta barrel, sugar-bindi 100.0
3hn3_A 613 Beta-G1, beta-glucuronidase; lysosomal enzyme, aci 100.0
3gm8_A 801 Glycoside hydrolase family 2, candidate beta-GLYC; 100.0
3fn9_A 692 Putative beta-galactosidase; structural genomics, 100.0
3cmg_A 667 Putative beta-galactosidase; structural genomics, 100.0
2vzs_A 1032 CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, 100.0
2je8_A 848 Beta-mannosidase; glycoside hydrolase, hydrolase; 99.97
1tg7_A 971 Beta-galactosidase; TIM barrel domain, glycoside h 99.37
3og2_A 1003 Beta-galactosidase; TIM barrel domain, glycoside h 99.16
1tg7_A971 Beta-galactosidase; TIM barrel domain, glycoside h 98.65
2okx_A 956 Rhamnosidase B; alpha barrel, glycoside hydrolase 98.11
3d3a_A 612 Beta-galactosidase; protein structure initiative I 97.08
3og2_A1003 Beta-galactosidase; TIM barrel domain, glycoside h 96.61
3d3a_A612 Beta-galactosidase; protein structure initiative I 96.39
3cih_A 739 Putative alpha-rhamnosidase; structural genomics, 95.33
4e8d_A595 Glycosyl hydrolase, family 35; TIM barrel, beta-pr 94.92
3thd_A 654 Beta-galactosidase; TIM-barrel domain, glycosyl hy 94.16
4e8d_A595 Glycosyl hydrolase, family 35; TIM barrel, beta-pr 93.04
3thd_A654 Beta-galactosidase; TIM-barrel domain, glycosyl hy 90.59
3pe9_A98 Fibronectin(III)-like module; CBHA, beta-sandwich, 86.74
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II (PSI-II), glycosyl hydrolase family 2, jelly-roll fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB: 3dec_A Back     alignment and structure
Probab=100.00  E-value=5.1e-55  Score=453.91  Aligned_cols=238  Identities=36%  Similarity=0.707  Sum_probs=217.4

Q ss_pred             CCCCCCCcccccccCCCCCCCccccCChhhhcccCCchhhHHHhhhcccccCCCCCcEEecCccceEEecCCCCCCCccc
Q 023943           17 GYKVWEDPSFIKWRKRDPHVTLRCHDSVEVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNF   96 (275)
Q Consensus        17 ~~~~w~~p~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LnG~W~F~~~~~~~~~p~~~   96 (275)
                      ..+.||||+|+++||||+||+|+||++.++|...        ++.+       .++..++|||.|+|++...+...|++|
T Consensus         6 ~~~~w~~~~v~~~nr~~~~a~~~~~~~~~~a~~~--------~~~~-------~s~~~~~LnG~W~F~~~~~~~~~~~~~   70 (1010)
T 3bga_A            6 PLPEWQSQYAVGLNKLAPHTYVWPYADASDIGKP--------GGYE-------QSPYYMSLNGKWKFNWVKNPDNRPKDF   70 (1010)
T ss_dssp             -CCGGGCSSCCBSSCCCCCCCCCCCSCGGGGGST--------TGGG-------GSTTEEECCEEEEEEEEESGGGSCTTT
T ss_pred             cccCCCCCcccccCCCCCCCCccCcCCHHHHhhc--------cccc-------cCceEEecCCCccEEECCCcccCchhh
Confidence            3456999999999999999999999998865421        1111       246789999999999998888889999


Q ss_pred             cCCCCCCCCCeEeccCcccccccCCCCcccceeccC-------CCCCCCCccc-CCcccEEEEEEcCCCCCCceEEEEeC
Q 023943           97 HKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPF-------PLDPPNVPAE-NPTGCYRTYFHIPKEWQGRRILLHFE  168 (275)
Q Consensus        97 ~~~~~d~~~W~~i~VP~~w~~~g~~~p~y~n~~yp~-------~~~pp~vp~~-n~~g~Yrr~F~lp~~~~~~~i~L~f~  168 (275)
                      +++++++++|.+|.||++|+++|++.|+|+|+.|||       +.+||++|.+ ++++||||+|++|+.|++++++|+|+
T Consensus        71 ~~~~~~~s~W~~i~VP~~w~~~g~~~p~y~n~~~p~~~~~~~~~~~~p~vp~~~~~~~~Yrr~F~vp~~~~g~~v~L~F~  150 (1010)
T 3bga_A           71 YQPSYYTGGWADINVPGNWERQGYGTAIYVNETYEFDDKMFNFKKNPPLVPFAENEVGSYRRTFKVPADWKGRRVVLCCE  150 (1010)
T ss_dssp             TSTTSCCTTSEEEEESSCGGGGTSSCCEEESSSCTTSBGGGTBCCBTTBCCSTTCEEEEEEEEEECCGGGTTSEEEEEES
T ss_pred             hcCCCCcCCCeEEecCCcHHHcCCCCcccccccccccccccccccCCCCcccccCcEEEEEEEeEeCcccCCCEEEEEEC
Confidence            999999999999999999999999999999999999       6789999876 99999999999999999999999999


Q ss_pred             cccceeEEEEcCEEeeeecCCCCCceeccccccccCCCCCceEEEEEEEecCCCCcccCCCCCccccccceeEEEEeCCc
Q 023943          169 AVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQV  248 (275)
Q Consensus       169 gv~s~~~VwvNG~~VG~~~~~~~p~efdIT~~Lk~~~~G~eN~L~V~V~~~~dgs~ledqd~w~~~GI~RdV~L~~~p~~  248 (275)
                      ||++.++|||||++||+|+|+|+|++||||++|++   | +|+|+|+|.+|++|+|+++||+|+++||||+|+|+++|++
T Consensus       151 gv~~~a~V~vNG~~vG~~~gg~~p~~~DIT~~L~~---G-~N~L~V~V~~~~d~s~~e~~d~w~~sGI~R~V~L~~~p~~  226 (1010)
T 3bga_A          151 GVISFYYVWVNGKLLGYNQGSKTAAEWDITDVLSE---G-ENVVALEVYRWSSGAYLECQDMWRLSGIERDVYLYSTPKQ  226 (1010)
T ss_dssp             CEESEEEEEETTEEEEEEECSSSCEEEECGGGCCS---S-EEEEEEEEESCCGGGGGBCCSEEECCEECSCEEEEEECSS
T ss_pred             CCCceeEEEECCEEEeeEeCCCCcceeehhhhccC---C-CcEEEEEEEecCCCcccccCCccccCCcceEEEEEEeCCc
Confidence            99999999999999999999999999999999999   9 5999999999999999999999999999999999999999


Q ss_pred             eEEeEEEEEeec-CCeeEEEEEEEEe
Q 023943          249 FIADYFFKSNLA-EDFSLADIQVNTC  273 (275)
Q Consensus       249 ~I~D~~v~t~ld-~~~~~~~l~v~~~  273 (275)
                      ||+|++|+++++ ++++.|+|+|++.
T Consensus       227 ~I~d~~v~t~~~~~~~~~a~l~v~v~  252 (1010)
T 3bga_A          227 YIADYKVSASLDKEKYKEGIFNLEVT  252 (1010)
T ss_dssp             EEEEEEEEEEECTTTSCSEEEEEEEE
T ss_pred             eEeeEEEEEeecccCCceEEEEEEEE
Confidence            999999999998 7777777776653
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase, hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A Back     alignment and structure
>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel), jelly-roll barrel, immunoglobulin, beta supersandwich, hydrolase; HET: GAL; 1.50A {Escherichia coli} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 PDB: 1hn1_A 1jyx_A* 1jz3_A* 1jz4_A* 1jz5_A* 1jz6_A* 1dp0_A* 3iap_A* 1jz8_A* 1jyn_A* 1jyv_A* 1jyw_A* 3iaq_A* 1px3_A 1px4_A* 3czj_A* 3i3e_A 3i3d_A* 3i3b_A 3dym_A ... Back     alignment and structure
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 Back     alignment and structure
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain, beta-sandwich domai glycosyl hydrolase, glycosida hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB: 3k46_A* 3k4d_A* 3lpg_A* 3k4a_A Back     alignment and structure
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase, glycosidase, disease mutat glycoprotein, hydrolase, lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN GUP; 1.70A {Homo sapiens} PDB: 1bhg_A* Back     alignment and structure
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural genomics, glycosidase, PSI-2, protein initiative; 2.40A {Bacteroides vulgatus} Back     alignment and structure
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis} Back     alignment and structure
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis} Back     alignment and structure
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A* Back     alignment and structure
>2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A {Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A* 2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A* Back     alignment and structure
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A* Back     alignment and structure
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A* Back     alignment and structure
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A* Back     alignment and structure
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP} Back     alignment and structure
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A* Back     alignment and structure
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A Back     alignment and structure
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A* Back     alignment and structure
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A Back     alignment and structure
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A* Back     alignment and structure
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 275
d1jz8a3207 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichi 2e-46
d1yq2a3216 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacte 3e-46
d2vzsa4184 b.18.1.5 (A:42-225) Exochitosanase CsxA {Amycolato 8e-33
d1bhga2204 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Hom 3e-29
d1tg7a2182 b.18.1.27 (A:667-848) Beta-galactosidase LacA, dom 1e-23
d2je8a4192 b.18.1.5 (A:28-219) Beta-mannosidase {Bacteroides 2e-22
>d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli [TaxId: 562]} Length = 207 Back     information, alignment and structure

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: beta-Galactosidase/glucuronidase, N-terminal domain
domain: beta-Galactosidase
species: Escherichia coli [TaxId: 562]

 Score =  152 bits (385), Expect = 2e-46
 Identities = 93/227 (40%), Positives = 122/227 (53%), Gaps = 25/227 (11%)

Query: 21  WEDPSFIKWRKRDPHVTLRCHDSVEVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGH 80
           WE+P   +  +   H       + E                   A        ++SL+G 
Sbjct: 4   WENPGVTQLNRLAAHPPFASWRNSE------------------EARTDRPSQQLRSLNGE 45

Query: 81  WKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVP 140
           W+F    +P  VP ++ +    +   + + VPSNWQMHG+D PIYTNV YP  ++PP VP
Sbjct: 46  WRFAWFPAPEAVPESWLECDLPE--ADTVVVPSNWQMHGYDAPIYTNVTYPITVNPPFVP 103

Query: 141 AENPTGCY-RTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISD 199
            ENPTGCY  T+       Q  +  + F+ V+SAF  W NG  VGY QDSRLP+EF++S 
Sbjct: 104 TENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLPSEFDLSA 163

Query: 200 YCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKP 246
           +        +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP
Sbjct: 164 FLRAG----ENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKP 206
>d1yq2a3 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 192168]} Length = 216 Back     information, alignment and structure
>d2vzsa4 b.18.1.5 (A:42-225) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]} Length = 184 Back     information, alignment and structure
>d1bhga2 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9606]} Length = 204 Back     information, alignment and structure
>d1tg7a2 b.18.1.27 (A:667-848) Beta-galactosidase LacA, domains 4 and 5 {Penicillium sp. [TaxId: 5081]} Length = 182 Back     information, alignment and structure
>d2je8a4 b.18.1.5 (A:28-219) Beta-mannosidase {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 192 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query275
d1jz8a3207 beta-Galactosidase {Escherichia coli [TaxId: 562]} 100.0
d1yq2a3216 beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 100.0
d1bhga2204 beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9 100.0
d2je8a4192 Beta-mannosidase {Bacteroides thetaiotaomicron [Ta 99.96
d2vzsa4184 Exochitosanase CsxA {Amycolatopsis orientalis [Tax 99.96
d1tg7a2182 Beta-galactosidase LacA, domains 4 and 5 {Penicill 99.94
d1tg7a3163 Beta-galactosidase LacA, domains 4 and 5 {Penicill 97.78
d1nkga2171 Rhamnogalacturonase B, RhgB, C-terminal domain {As 88.8
>d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: beta-Galactosidase/glucuronidase, N-terminal domain
domain: beta-Galactosidase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.6e-54  Score=373.38  Aligned_cols=206  Identities=45%  Similarity=0.868  Sum_probs=190.4

Q ss_pred             CCCCCCcccccccCCCCCCCccccCChhhhcccCCchhhHHHhhhcccccCCCCCcEEecCccceEEecCCCCCCCcccc
Q 023943           18 YKVWEDPSFIKWRKRDPHVTLRCHDSVEVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFH   97 (275)
Q Consensus        18 ~~~w~~p~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LnG~W~F~~~~~~~~~p~~~~   97 (275)
                      +++||||+|++|||||+||.|++|.+.+.|..         .         +.++..++|||.|+|++.+.+.+.+..|+
T Consensus         1 ~~~w~~~~~~~~nrl~~~s~~~~~~~~~~a~~---------~---------~~sr~~~sLnG~W~F~~~~~~~~~~~~~~   62 (207)
T d1jz8a3           1 RRDWENPGVTQLNRLAAHPPFASWRNSEEART---------D---------RPSQQLRSLNGEWRFAWFPAPEAVPESWL   62 (207)
T ss_dssp             CCGGGCTTCSEESCCCCCSCCCCBSSHHHHHH---------T---------CCCTTEEECCEEEEEEEESSGGGSCTHHH
T ss_pred             CCCccCcccccccCcCCCCCccccCCHHHHhh---------C---------CCccceEccCCceeeEEccCccccccccc
Confidence            36899999999999999999999999885421         1         23678999999999999998888888888


Q ss_pred             CCCCCCCCCeEeccCcccccccCCCCcccceeccCCCCCCCCcccCCcccEEEEEEcCCCC-CCceEEEEeCcccceeEE
Q 023943           98 KSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCA  176 (275)
Q Consensus        98 ~~~~d~~~W~~i~VP~~w~~~g~~~p~y~n~~yp~~~~pp~vp~~n~~g~Yrr~F~lp~~~-~~~~i~L~f~gv~s~~~V  176 (275)
                      +.++  +.|..|.||++|+.+|++.+.|.+..|++...++.++..++++||||+|.||++| +|++++|+|+||++.++|
T Consensus        63 ~~~~--~~~~~i~vP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wY~r~f~ip~~~~~~~~i~L~f~gv~~~a~V  140 (207)
T d1jz8a3          63 ECDL--PEADTVVVPSNWQMHGYDAPIYTNVTYPITVNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHL  140 (207)
T ss_dssp             HSCC--TTCEEEEESCCGGGGTSSCCEEESSSCSSCSCTTCCCSSCCEEEEEEEEEECHHHHSSSEEEEEESCEESEEEE
T ss_pred             cCCC--CccceeccccceeecCCCCcccccccccccccCccccccCceEEEEEEeEecccccCCCEEEEEecccceEEEE
Confidence            7754  5699999999999999999999999999999999998889999999999999998 799999999999999999


Q ss_pred             EEcCEEeeeecCCCCCceeccccccccCCCCCceEEEEEEEecCCCCcccCCCCCccccccceeEEEEeCC
Q 023943          177 WINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQ  247 (275)
Q Consensus       177 wvNG~~VG~~~~~~~p~efdIT~~Lk~~~~G~eN~L~V~V~~~~dgs~ledqd~w~~~GI~RdV~L~~~p~  247 (275)
                      ||||++||+|+|+|+||+||||++|++   | +|+|+|+|.+++|++++++||+|+++||||+|+|+++|.
T Consensus       141 ~vNG~~vG~~~gg~~pf~fDiT~~l~~---G-~N~L~V~V~~~~d~~~~~~~d~~~~~GI~r~V~L~~~P~  207 (207)
T d1jz8a3         141 WCNGRWVGYGQDSRLPSEFDLSAFLRA---G-ENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPT  207 (207)
T ss_dssp             EETTEEEEEEECTTSCEEEECTTTCCS---E-EEEEEEEEESCCGGGGGBCCSEEECCEECSCEEEEEECS
T ss_pred             EECCEEEEEecCCCcCEEEeChhcccC---C-ceEEEEEEEeCCCCCccCcCcccccCCCCeEEEEEEeCC
Confidence            999999999999999999999999999   9 499999999999999999999999999999999999984
>d1yq2a3 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 192168]} Back     information, alignment and structure
>d1bhga2 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2je8a4 b.18.1.5 (A:28-219) Beta-mannosidase {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2vzsa4 b.18.1.5 (A:42-225) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1tg7a2 b.18.1.27 (A:667-848) Beta-galactosidase LacA, domains 4 and 5 {Penicillium sp. [TaxId: 5081]} Back     information, alignment and structure
>d1tg7a3 b.18.1.27 (A:849-1011) Beta-galactosidase LacA, domains 4 and 5 {Penicillium sp. [TaxId: 5081]} Back     information, alignment and structure
>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, C-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure