Citrus Sinensis ID: 023961

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYGQCIMWLN
cccEEEEEcccccccccccHHHHcccccHHHHHHHHHHcccccccccccEEEEEEEcccEEEEEEEEEEcccEEEEEEEccccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccccccccccEEEEccccccccccccEEEEEccccccccccccccccccccccccccccHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
cccEEEEEccHHHHHEEEEEEEccccccHHHHHHHHHHHHHccccccccEEEEEEccccEEEEEEEccccccEEEEEEEcHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccHcccEEEccccEEEEccccccccEEEEEEEccEEcccccHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccHHHHcccccccccc
MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINqdknkyntpkyRFVVRFTNKDITAQIISASIAGDIVLASAYAhelpryglevgltNYAAAYCTGLLLARRVLKMLEMDAEYEghveatgedysveptenrrpfRALLDVGLVKTTTGNRVFGALKgaldggldiphsekrfagfskdskqLDAEVHRKYIYCGHVAAYMRTLmedepekyQSHFCEYIKRGIEADNLEELYKKVHAAIradpnqkksekkppaehkrygqcimwln
mafakaqkskayfkryqvkykrrregktdyrarirlinqdknkyntpkyRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGhveatgedysveptenrrpfraLLDVGLVKTTTGNRVFGALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHaairadpnqkksekkppaehkrygqcimwln
MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFgalkgaldggldIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYGQCIMWLN
***********YFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEAT************RPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHS**RFAGF*****QLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI*********************QCIMW**
*AFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIR********************QCIMWL*
*********KAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRAD**************KRYGQCIMWLN
*AFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPN***********************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYGQCIMWLN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query274 2.2.26 [Sep-21-2011]
Q6UNT2302 60S ribosomal protein L5 N/A no 0.970 0.880 0.872 1e-136
P49227301 60S ribosomal protein L5- yes no 0.970 0.883 0.819 1e-131
Q8LBI1301 60S ribosomal protein L5- yes no 0.970 0.883 0.819 1e-130
A2WXX3304 60S ribosomal protein L5- N/A no 0.967 0.871 0.788 1e-126
Q0JGY1304 60S ribosomal protein L5- yes no 0.967 0.871 0.788 1e-126
Q8L4L4304 60S ribosomal protein L5- yes no 0.956 0.861 0.781 1e-123
Q4KTI3293 60S ribosomal protein L5 N/A no 0.996 0.931 0.605 2e-94
O22608271 60S ribosomal protein L5 N/A no 0.963 0.974 0.595 2e-92
Q9W5R8299 60S ribosomal protein L5 yes no 0.967 0.886 0.609 2e-91
Q56FG6297 60S ribosomal protein L5 N/A no 1.0 0.922 0.578 6e-91
>sp|Q6UNT2|RL5_CUCSA 60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1 Back     alignment and function desciption
 Score =  485 bits (1249), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 232/266 (87%), Positives = 251/266 (94%)

Query: 1   MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
           MAFAKAQK+KAYFKRYQVK+KRRREGKTDYRARIRLINQDKNKYNTPKYRFVVR +NKDI
Sbjct: 1   MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRTSNKDI 60

Query: 61  TAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYE 120
           TAQIISASIAGD+VLASAY+HELP+YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYE
Sbjct: 61  TAQIISASIAGDLVLASAYSHELPQYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYE 120

Query: 121 GHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSEKRFA 180
           G+VEATGEDYSVEP + RRPFRALLDVGL++TTTGNRVFGALKGALDGGLDIPHS+KRFA
Sbjct: 121 GNVEATGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 180

Query: 181 GFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYK 240
           G++K+ +QLD EVHRKYI+ GHVAAYMRTLMEDEPEKYQSHF EYIK+GIEAD LE LYK
Sbjct: 181 GYAKNGQQLDVEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHFSEYIKKGIEADELEGLYK 240

Query: 241 KVHAAIRADPNQKKSEKKPPAEHKRY 266
           KVHAAIRA+P  KKS+K  P  HKRY
Sbjct: 241 KVHAAIRANPIAKKSDKPQPKAHKRY 266
This protein binds 5S RNA.
Cucumis sativus (taxid: 3659)
>sp|P49227|RL52_ARATH 60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3 Back     alignment and function description
>sp|Q8LBI1|RL51_ARATH 60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2 Back     alignment and function description
>sp|A2WXX3|RL51_ORYSI 60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2 Back     alignment and function description
>sp|Q0JGY1|RL51_ORYSJ 60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1 Back     alignment and function description
>sp|Q8L4L4|RL52_ORYSJ 60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1 Back     alignment and function description
>sp|Q4KTI3|RL5_SUBDO 60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1 Back     alignment and function description
>sp|O22608|RL5_DUNSA 60S ribosomal protein L5 OS=Dunaliella salina GN=RPL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9W5R8|RL5_DROME 60S ribosomal protein L5 OS=Drosophila melanogaster GN=RpL5 PE=2 SV=2 Back     alignment and function description
>sp|Q56FG6|RL5_LYSTE 60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query274
224127226297 predicted protein [Populus trichocarpa] 0.970 0.895 0.894 1e-139
296084316333 unnamed protein product [Vitis vinifera] 0.970 0.798 0.890 1e-138
225434146301 PREDICTED: 60S ribosomal protein L5-like 0.970 0.883 0.890 1e-138
224131982298 predicted protein [Populus trichocarpa] 0.970 0.892 0.887 1e-137
313586429298 60S ribosomal protein L5A [Hevea brasili 0.970 0.892 0.883 1e-137
313586431298 60S ribosomal protein L5B [Hevea brasili 0.970 0.892 0.883 1e-137
255567762299 ribosomal protein L5, putative [Ricinus 0.970 0.889 0.872 1e-136
118483391298 unknown [Populus trichocarpa] 0.970 0.892 0.883 1e-136
356560595298 PREDICTED: 60S ribosomal protein L5-like 0.970 0.892 0.872 1e-135
217073390302 unknown [Medicago truncatula] 0.970 0.880 0.868 1e-135
>gi|224127226|ref|XP_002329431.1| predicted protein [Populus trichocarpa] gi|118486443|gb|ABK95061.1| unknown [Populus trichocarpa] gi|222870481|gb|EEF07612.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 238/266 (89%), Positives = 253/266 (95%)

Query: 1   MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
           MAFAKAQKS+AYFKRYQVK+KRRR GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI
Sbjct: 1   MAFAKAQKSRAYFKRYQVKFKRRRAGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 61  TAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYE 120
            AQI SASIAGDIVLASAYAHELPRYGLE GLTNYAAAYCTGLLLARRVLKMLEMD EYE
Sbjct: 61  IAQIASASIAGDIVLASAYAHELPRYGLEAGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query: 121 GHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSEKRFA 180
           G+VEATGED+SVEP ++RRPFRALLDVGL++TTTGNRVFGALKGALDGGLDIPHS+KRFA
Sbjct: 121 GNVEATGEDFSVEPADSRRPFRALLDVGLLRTTTGNRVFGALKGALDGGLDIPHSDKRFA 180

Query: 181 GFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYK 240
           GF+KD+KQLDAEVHRKYIY GHVAAYMRTLMEDEPEKYQSHF EY+KRGI+AD +E LYK
Sbjct: 181 GFAKDNKQLDAEVHRKYIYGGHVAAYMRTLMEDEPEKYQSHFSEYLKRGIDADGMEALYK 240

Query: 241 KVHAAIRADPNQKKSEKKPPAEHKRY 266
           KVHAAIRADP  KKSEK+PP EHKRY
Sbjct: 241 KVHAAIRADPTAKKSEKQPPKEHKRY 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296084316|emb|CBI24704.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225434146|ref|XP_002277846.1| PREDICTED: 60S ribosomal protein L5-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224131982|ref|XP_002321226.1| predicted protein [Populus trichocarpa] gi|222861999|gb|EEE99541.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|313586429|gb|ADR71225.1| 60S ribosomal protein L5A [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|313586431|gb|ADR71226.1| 60S ribosomal protein L5B [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|255567762|ref|XP_002524859.1| ribosomal protein L5, putative [Ricinus communis] gi|223535822|gb|EEF37483.1| ribosomal protein L5, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|118483391|gb|ABK93596.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356560595|ref|XP_003548576.1| PREDICTED: 60S ribosomal protein L5-like [Glycine max] Back     alignment and taxonomy information
>gi|217073390|gb|ACJ85054.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query274
TAIR|locus:2167042301 RPL5B "ribosomal protein L5 B" 0.970 0.883 0.774 2.6e-111
TAIR|locus:2094508301 ATL5 "ribosomal protein L5" [A 0.970 0.883 0.774 1.4e-110
FB|FBgn0064225299 RpL5 "Ribosomal protein L5" [D 0.967 0.886 0.575 6.2e-78
UNIPROTKB|P22451297 RPL5 "60S ribosomal protein L5 0.956 0.882 0.571 1e-77
UNIPROTKB|P46777297 RPL5 "60S ribosomal protein L5 0.974 0.898 0.561 1e-77
WB|WBGene00004416293 rpl-5 [Caenorhabditis elegans 0.956 0.894 0.569 1.3e-77
UNIPROTKB|F1S530297 RPL5 "60S ribosomal protein L5 0.974 0.898 0.557 2.7e-77
UNIPROTKB|F2Z4K4296 RPL5 "60S ribosomal protein L5 0.948 0.878 0.571 3.4e-77
UNIPROTKB|Q58DW5297 RPL5 "60S ribosomal protein L5 0.974 0.898 0.557 3.4e-77
UNIPROTKB|F1P7B0297 RPL5 "Uncharacterized protein" 0.967 0.892 0.561 3.4e-77
TAIR|locus:2167042 RPL5B "ribosomal protein L5 B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1099 (391.9 bits), Expect = 2.6e-111, P = 2.6e-111
 Identities = 206/266 (77%), Positives = 233/266 (87%)

Query:     1 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
             M F K+ KS AYFKRYQVK++RRR+GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI
Sbjct:     1 MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query:    61 TAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYE 120
              AQI+SASIAGDIV ASAYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMD EYE
Sbjct:    61 VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query:   121 GHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFA 180
             G+VEATGED+SVEPT++RRPFRALLDVGL++TTTGNRVF            IPHS+KRFA
Sbjct:   121 GNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 180

Query:   181 GFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYK 240
             GF K++KQLDAE+HR YIY GHV+ YM+ L EDEPEK Q+HF  YIK+G+EA+++EE+YK
Sbjct:   181 GFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYK 240

Query:   241 KVHAAIRADPNQKKSEKKPPAEHKRY 266
             KVHAAIRA+PN KK+EK  P EHKRY
Sbjct:   241 KVHAAIRAEPNHKKTEKSAPKEHKRY 266
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA;ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0008097 "5S rRNA binding" evidence=IEA
GO:0042254 "ribosome biogenesis" evidence=ISS
GO:0005730 "nucleolus" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA
GO:0008283 "cell proliferation" evidence=IMP
GO:0009965 "leaf morphogenesis" evidence=IMP
GO:0005829 "cytosol" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0001510 "RNA methylation" evidence=RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2094508 ATL5 "ribosomal protein L5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0064225 RpL5 "Ribosomal protein L5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|P22451 RPL5 "60S ribosomal protein L5" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P46777 RPL5 "60S ribosomal protein L5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
WB|WBGene00004416 rpl-5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1S530 RPL5 "60S ribosomal protein L5" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4K4 RPL5 "60S ribosomal protein L5" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DW5 RPL5 "60S ribosomal protein L5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1P7B0 RPL5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L4L4RL52_ORYSJNo assigned EC number0.78110.95620.8618yesno
P15126RL5B_XENLANo assigned EC number0.61350.91240.8445N/Ano
P15125RL5A_XENLANo assigned EC number0.61750.91240.8445N/Ano
Q231U7RL5_TETTSNo assigned EC number0.50180.97080.8837N/Ano
O59953RL5_NEUCRNo assigned EC number0.60820.95980.8737N/Ano
P49227RL52_ARATHNo assigned EC number0.81950.97080.8837yesno
Q58DW5RL5_BOVINNo assigned EC number0.61750.91240.8417yesno
Q26481RL5_STYCLNo assigned EC number0.62350.92700.8610N/Ano
O74306RL5B_SCHPONo assigned EC number0.56480.95250.8877yesno
P49405RL5_CAEELNo assigned EC number0.60240.90870.8498yesno
Q8LBI1RL51_ARATHNo assigned EC number0.81950.97080.8837yesno
P52822RL5A_SCHPONo assigned EC number0.56480.95250.8877yesno
Q54XX3RL5_DICDINo assigned EC number0.53780.91240.8561yesno
Q0JGY1RL51_ORYSJNo assigned EC number0.78860.96710.8717yesno
Q4R5M0RL5_MACFANo assigned EC number0.61750.91240.8417N/Ano
Q4N655RL5_THEPANo assigned EC number0.59050.91240.8169yesno
O44248RL5_ANOGANo assigned EC number0.60720.89780.7569yesno
Q9W5R8RL5_DROMENo assigned EC number0.60900.96710.8862yesno
P46777RL5_HUMANNo assigned EC number0.62150.91240.8417yesno
Q627R7RL5_CAEBRNo assigned EC number0.59090.95980.8945N/Ano
Q6UNT2RL5_CUCSANo assigned EC number0.87210.97080.8807N/Ano
O65353RL5_HELANNo assigned EC number0.62160.94160.8686N/Ano
P22451RL5_CHICKNo assigned EC number0.62150.91240.8417yesno
Q5XUC7RL5_TOXCINo assigned EC number0.59700.97080.8866N/Ano
Q1HQU2RL5_AEDAENo assigned EC number0.60950.91240.8417N/Ano
A2WXX3RL51_ORYSINo assigned EC number0.78860.96710.8717N/Ano
Q56FG6RL5_LYSTENo assigned EC number0.57811.00.9225N/Ano
Q4KTI3RL5_SUBDONo assigned EC number0.60580.99630.9317N/Ano
O76190RL5_BOMMONo assigned EC number0.58180.99630.9130N/Ano
P26321RL5_YEASTNo assigned EC number0.55630.98170.9057yesno
Q6JWW5RL5_OIKDINo assigned EC number0.59120.90870.8217N/Ano
Q4UDE7RL5_THEANNo assigned EC number0.58660.91240.8169yesno
P09895RL5_RATNo assigned EC number0.61350.91240.8417yesno
Q5EY89RL5_EIMTENo assigned EC number0.56880.97810.8617N/Ano
O22608RL5_DUNSANo assigned EC number0.59550.96350.9741N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_1200093
SubName- Full=Putative uncharacterized protein; (297 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.1845.1.1
60S ribosomal protein L4/L1 (RPL4D) (408 aa)
• ••••• 0.713
estExt_Genewise1_v1.C_280409
SubName- Full=Putative uncharacterized protein; (408 aa)
• ••••• 0.712
estExt_Genewise1_v1.C_LG_XVI2622
60S ribosomal protein L4/L1 (RPL4D) (407 aa)
• ••••• 0.679
estExt_fgenesh4_pm.C_LG_III0216
SubName- Full=Putative uncharacterized protein; (146 aa)
•  •••  0.661
estExt_fgenesh4_pg.C_LG_VII0552
SubName- Full=Putative uncharacterized protein; (146 aa)
•  •••  0.660
estExt_fgenesh4_pm.C_LG_V0429
SubName- Full=Putative uncharacterized protein; (389 aa)
• ••••• 0.657
estExt_fgenesh4_pg.C_LG_V0222
SubName- Full=Putative uncharacterized protein; (147 aa)
•  •••  0.650
fgenesh4_pg.C_LG_VI001257
SubName- Full=Putative uncharacterized protein; (180 aa)
•  •• • 0.649
estExt_fgenesh4_pm.C_LG_II0304
SubName- Full=Putative uncharacterized protein; (389 aa)
• ••••  0.649
eugene3.01500073
SubName- Full=Putative uncharacterized protein; (389 aa)
• ••••  0.648

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
PTZ00069300 PTZ00069, PTZ00069, 60S ribosomal protein L5; Prov 1e-146
PRK08569193 PRK08569, rpl18p, 50S ribosomal protein L18P; Revi 8e-48
pfam00861119 pfam00861, Ribosomal_L18p, Ribosomal L18p/L5e fami 6e-41
pfam1420493 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-termin 1e-37
COG0256125 COG0256, RplR, Ribosomal protein L18 [Translation, 6e-29
cd00432103 cd00432, Ribosomal_L18_L5e, Ribosomal L18/L5e: L18 5e-27
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional Back     alignment and domain information 
 Score =  410 bits (1055), Expect = e-146
 Identities = 176/270 (65%), Positives = 211/270 (78%), Gaps = 4/270 (1%)

Query: 1   MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
           MAF K  K+KAYFKR+QVKY+RRREGKTDY AR RLI QDKNKYN+PKYR VVR TNKDI
Sbjct: 1   MAFVKVVKNKAYFKRFQVKYRRRREGKTDYYARRRLILQDKNKYNSPKYRLVVRITNKDI 60

Query: 61  TAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYE 120
             QI+ A+I GD VLA+AY+HELPR+G+ VGLTNYAAAY TGLLLARR+LK L +D ++E
Sbjct: 61  ICQIVYATIVGDKVLAAAYSHELPRFGIPVGLTNYAAAYATGLLLARRLLKKLGLDKQFE 120

Query: 121 GHVEATGEDYSV--EPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSEKR 178
           G  EA GE Y V  E  E RRPF+A+LDVGL +TTTGNRVFGALKGA+DGGL IPHS  R
Sbjct: 121 GVKEADGEYYHVDEEDDEERRPFKAILDVGLARTTTGNRVFGALKGAVDGGLHIPHSPNR 180

Query: 179 FAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEEL 238
           F G+SK+    DAEVHR  I+  HVA YM+ L E++P+KY+  F +YIK G+  D+LE++
Sbjct: 181 FPGYSKEKDSYDAEVHRDRIFGKHVAEYMKQLKEEDPDKYKKQFSKYIKAGVGPDSLEDM 240

Query: 239 YKKVHAAIRADP--NQKKSEKKPPAEHKRY 266
           YKK HAAIRA+P   +KK +KK    HK+Y
Sbjct: 241 YKKAHAAIRANPSKVKKKKKKKKKVVHKKY 270

Length = 300
>gnl|CDD|236294 PRK08569, rpl18p, 50S ribosomal protein L18P; Reviewed Back     alignment and domain information
>gnl|CDD|216159 pfam00861, Ribosomal_L18p, Ribosomal L18p/L5e family Back     alignment and domain information
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region Back     alignment and domain information
>gnl|CDD|223334 COG0256, RplR, Ribosomal protein L18 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238246 cd00432, Ribosomal_L18_L5e, Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 274
PTZ00069300 60S ribosomal protein L5; Provisional 100.0
KOG0875264 consensus 60S ribosomal protein L5 [Translation, r 100.0
PRK08569193 rpl18p 50S ribosomal protein L18P; Reviewed 100.0
COG0256125 RplR Ribosomal protein L18 [Translation, ribosomal 100.0
PF00861119 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPr 99.97
PF1420494 Ribosomal_L18_c: Ribosomal L18 C-terminal region; 99.97
CHL00139109 rpl18 ribosomal protein L18; Validated 99.97
PRK05593117 rplR 50S ribosomal protein L18; Reviewed 99.96
TIGR00060114 L18_bact ribosomal protein L18, bacterial type. Th 99.96
cd00432103 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is 99.95
PTZ00032211 60S ribosomal protein L18; Provisional 99.91
PTZ00090233 40S ribosomal protein S11; Provisional 96.26
KOG3333188 consensus Mitochondrial/chloroplast ribosomal prot 96.08
PF00411110 Ribosomal_S11: Ribosomal protein S11; InterPro: IP 95.13
TIGR03632108 bact_S11 30S ribosomal protein S11. This model des 93.82
PRK05309128 30S ribosomal protein S11; Validated 93.5
PRK09607132 rps11p 30S ribosomal protein S11P; Reviewed 93.49
CHL00041116 rps11 ribosomal protein S11 93.01
PTZ00129149 40S ribosomal protein S14; Provisional 90.77
TIGR03628114 arch_S11P archaeal ribosomal protein S11P. This mo 88.11
>PTZ00069 60S ribosomal protein L5; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.7e-119  Score=831.05  Aligned_cols=273  Identities=64%  Similarity=1.023  Sum_probs=265.4

Q ss_pred             CcceeeecCccccccccccccccccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q 023961            1 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYA   80 (274)
Q Consensus         1 m~fvk~~kn~ay~~ryqvk~RRRRegKTdY~~R~rli~qdknky~s~KpRLvVrrTNk~IiaQIi~~~~~GD~tLasAsS   80 (274)
                      |+||||+||+|||+||||||||||||||||++|++||.||||||||||||||||+||++|||||+.+.++||+|||||+|
T Consensus         1 M~fvKv~KnkaY~~ryqvkfRRRREGKTdY~~R~rLi~q~knKynspK~RlVVR~TN~~ii~Qiv~~~~~GD~vl~sA~S   80 (300)
T PTZ00069          1 MAFVKVVKNKAYFKRFQVKYRRRREGKTDYYARRRLILQDKNKYNSPKYRLVVRITNKDIICQIVYATIVGDKVLAAAYS   80 (300)
T ss_pred             CCceeeeecccccccccchhhhhhcccccHHHHHHHHHccccccCCCCceEEEEEECCcEEEEEEEeecCCCEEEEEeeh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccccCCCcHHHHHHHHHHHHHHHHHhhcccccccCcccccCccccc-ccCC-CCCCceEEEeecCcccccCCce
Q 023961           81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSV-EPTE-NRRPFRALLDVGLVKTTTGNRV  158 (274)
Q Consensus        81 ~eL~k~g~k~g~tN~~AAy~tGlLlA~Ral~k~~~~~~y~Gi~e~~g~~~~v-e~~~-~~~~f~~vLD~Gl~r~t~g~RV  158 (274)
                      +||++|||++|++|++||||||+|+|+|+|++||||+.|+|++++||++|+| |+.+ +++||+|||||||+|+|+|+||
T Consensus        81 ~eL~kyG~k~gl~N~~AAY~TGlL~arR~L~kl~ld~~y~G~~e~~g~~y~v~e~~~~~~rpf~a~LDiGL~rtt~G~RV  160 (300)
T PTZ00069         81 HELPRFGIPVGLTNYAAAYATGLLLARRLLKKLGLDKQFEGVKEADGEYYHVDEEDDEERRPFKAILDVGLARTTTGNRV  160 (300)
T ss_pred             hhHhhcCcCCCCccHHHHHHHHHHHHHHHHHhhcccccccCcccccCcccccccccccCCCCceEEEeeccccCCCCcee
Confidence            9999999999999999999999999999999999999999999999999999 7766 7999999999999999999999


Q ss_pred             eeeecccccCCccccCCccccCCCCCCccCCCHHhhhhhcccccHHHHHHHhcccChHHHHhhHHHHHHcCCCcchHHHH
Q 023961          159 FGALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEEL  238 (274)
Q Consensus       159 faalKGA~DgGL~iPh~~~~fp~~~~~~k~~~ae~~~~ri~G~hva~Y~~~L~eed~e~yk~qFS~yik~~~~p~~~e~~  238 (274)
                      |||||||+||||+||||+++|||||.++++||||+|++||+|+|||+||+.|+|||||+|++|||+||++||+||+||+|
T Consensus       161 FaalKGa~DgGl~IPhs~~rfpg~d~e~~~~dAe~hR~rI~G~HVa~Ym~~Lkeedee~yk~qFS~yik~gl~~d~le~~  240 (300)
T PTZ00069        161 FGALKGAVDGGLHIPHSPNRFPGYSKEKDSYDAEVHRDRIFGKHVAEYMKQLKEEDPDKYKKQFSKYIKAGVGPDSLEDM  240 (300)
T ss_pred             eeehhcccccCcccCCCCCcCCCCCccccccChHHHHhhhcchhHHHHHHHhhhhChHHHHHHHHHHHHcCCChhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCC--cccccCCCCCCCC
Q 023961          239 YKKVHAAIRADPNQKKSEKKPP--AEHKRYGQCIMWL  273 (274)
Q Consensus       239 y~~~~~~I~~~p~~~~~~k~~~--~~~k~~~~~kms~  273 (274)
                      |++||++|++||.+++++++.+  ..+|+|+.+|||+
T Consensus       241 y~~ah~~Ir~~P~~~~~~kk~~~~~~~Kr~~~~Klt~  277 (300)
T PTZ00069        241 YKKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTG  277 (300)
T ss_pred             HHHHHHHHHhCcCccCccccccccccccccccccCCH
Confidence            9999999999998876666543  3678999999996

>KOG0875 consensus 60S ribosomal protein L5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed Back     alignment and domain information
>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF14204 Ribosomal_L18_c: Ribosomal L18 C-terminal region; PDB: 2ZKR_n 4A1E_M 4A1C_M 4A1A_M 4A17_M 3O58_E 1S1I_E 3IZS_Q 3O5H_E 3IZR_Q Back     alignment and domain information
>CHL00139 rpl18 ribosomal protein L18; Validated Back     alignment and domain information
>PRK05593 rplR 50S ribosomal protein L18; Reviewed Back     alignment and domain information
>TIGR00060 L18_bact ribosomal protein L18, bacterial type Back     alignment and domain information
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit Back     alignment and domain information
>PTZ00032 60S ribosomal protein L18; Provisional Back     alignment and domain information
>PTZ00090 40S ribosomal protein S11; Provisional Back     alignment and domain information
>KOG3333 consensus Mitochondrial/chloroplast ribosomal protein L18 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>TIGR03632 bact_S11 30S ribosomal protein S11 Back     alignment and domain information
>PRK05309 30S ribosomal protein S11; Validated Back     alignment and domain information
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed Back     alignment and domain information
>CHL00041 rps11 ribosomal protein S11 Back     alignment and domain information
>PTZ00129 40S ribosomal protein S14; Provisional Back     alignment and domain information
>TIGR03628 arch_S11P archaeal ribosomal protein S11P Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
3izr_Q304 Localization Of The Large Subunit Ribosomal Protein 1e-116
2zkr_n297 Structure Of A Mammalian Ribosomal 60s Subunit With 1e-76
3u5e_D297 The Structure Of The Eukaryotic Ribosome At 3.0 A R 2e-73
3izs_Q297 Localization Of The Large Subunit Ribosomal Protein 2e-73
3zf7_u308 High-resolution Cryo-electron Microscopy Structure 7e-71
3jyw_E237 Structure Of The 60s Proteins For Eukaryotic Riboso 1e-65
4a17_M301 T.Thermophila 60s Ribosomal Subunit In Complex With 9e-65
1s1i_E222 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 3e-60
1s72_N187 Refined Crystal Structure Of The Haloarcula Marismo 5e-17
1ffk_K186 Crystal Structure Of The Large Ribosomal Subunit Fr 6e-17
3j21_O203 Promiscuous Behavior Of Proteins In Archaeal Riboso 5e-13
4gmn_B49 Structural Basis Of Rpl5 Recognition By Syo1 Length 4e-07
>pdb|3IZR|Q Chain Q, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 304 Back     alignment and structure 
Iteration: 1

 Score =  412 bits (1060), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 195/265 (73%), Positives = 223/265 (84%), Gaps = 3/265 (1%)
Query: 2   AFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIT 61
            F K QK+ AYFKR+QVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFV   TNKDIT
Sbjct: 6   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 62
Query: 62  AQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEG 121
           AQI+ A+IAGDIV+A+AY+HELPRYGLEVGLTNYAAAYCTGLLLARRVL +  +D EYEG
Sbjct: 63  AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEG 122
Query: 122 HVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAG 181
           +VEATGEDY VEP + RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAG
Sbjct: 123 NVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAG 182
Query: 182 FSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKK 241
           F KD KQLD+++HRKYIY GHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKK
Sbjct: 183 FKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKK 242
Query: 242 VHAAIRADPNQKKSEKKPPAEHKRY 266
           VHAAIRADP   KS KK PA HKRY
Sbjct: 243 VHAAIRADPTMAKSTKKEPATHKRY 267
>pdb|2ZKR|NN Chain n, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 297 Back     alignment and structure
>pdb|3U5E|D Chain D, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 297 Back     alignment and structure
>pdb|3IZS|Q Chain Q, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 297 Back     alignment and structure
>pdb|3ZF7|UU Chain u, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 308 Back     alignment and structure
>pdb|3JYW|E Chain E, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 237 Back     alignment and structure
>pdb|4A17|M Chain M, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 301 Back     alignment and structure
>pdb|1S1I|E Chain E, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 222 Back     alignment and structure
>pdb|1S72|N Chain N, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 187 Back     alignment and structure
>pdb|1FFK|K Chain K, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 186 Back     alignment and structure
>pdb|3J21|O Chain O, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 203 Back     alignment and structure
>pdb|4GMN|B Chain B, Structural Basis Of Rpl5 Recognition By Syo1 Length = 49 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
3iz5_Q304 60S ribosomal protein L5 (L18P); eukaryotic riboso 1e-121
2zkr_n297 60S ribosomal protein L5; protein-RNA complex, 60S 1e-120
3u5e_D297 60S ribosomal protein L5; translation, ribosome, r 1e-119
4a17_M301 RPL5, 60S ribosomal protein L5; eukaryotic ribosom 1e-118
1vq8_N187 50S ribosomal protein L18P; ribosome 50S, protein- 1e-68
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 297 Back     alignment and structure
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E Length = 297 Back     alignment and structure
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M Length = 301 Back     alignment and structure
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ... Length = 187 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query274
3u5e_D297 60S ribosomal protein L5; translation, ribosome, r 100.0
4a17_M301 RPL5, 60S ribosomal protein L5; eukaryotic ribosom 100.0
2zkr_n297 60S ribosomal protein L5; protein-RNA complex, 60S 100.0
3iz5_Q304 60S ribosomal protein L5 (L18P); eukaryotic riboso 100.0
3j21_O203 50S ribosomal protein L18P; archaea, archaeal, KIN 100.0
1vq8_N187 50S ribosomal protein L18P; ribosome 50S, protein- 100.0
3r8s_O116 50S ribosomal protein L18; protein biosynthesis, R 100.0
1ovy_A120 50S ribosomal protein L18; ribosome; NMR {Geobacil 100.0
3v2d_S112 50S ribosomal protein L18; ribosome associated inh 99.97
2zjr_L114 50S ribosomal protein L18; ribosome, large ribosom 99.97
3bbo_Q161 Ribosomal protein L18; large ribosomal subunit, sp 99.95
4gmn_B49 60S ribosomal protein L5-like protein; ARM, heat, 99.9
2vqe_K129 30S ribosomal protein S11, 30S ribosomal protein S 95.52
3j20_M137 30S ribosomal protein S11P; archaea, archaeal, KIN 95.42
3r8n_K117 30S ribosomal protein S11; protein biosynthesis, R 94.73
3bbn_K140 Ribosomal protein S11; small ribosomal subunit, sp 94.6
2xzm_K151 RPS14E; ribosome, translation; 3.93A {Tetrahymena 93.34
3u5c_O137 RP59A, 40S ribosomal protein S14-A; translation, r 93.08
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E Back     alignment and structure
Probab=100.00  E-value=3.3e-123  Score=858.71  Aligned_cols=273  Identities=56%  Similarity=0.917  Sum_probs=265.2

Q ss_pred             CcceeeecCccccccccccccccccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q 023961            1 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYA   80 (274)
Q Consensus         1 m~fvk~~kn~ay~~ryqvk~RRRRegKTdY~~R~rli~qdknky~s~KpRLvVrrTNk~IiaQIi~~~~~GD~tLasAsS   80 (274)
                      |+||||+||+|||+|||||||||||||||||+|++||+|||||||||+||||||+||+|||||||++.++||+|||||||
T Consensus         1 m~fvkvvknkaYf~ryqvkfRRRReGKTdY~~R~rLi~qdknKynt~kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS   80 (297)
T 3u5e_D            1 MAFQKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYS   80 (297)
T ss_dssp             -CCTTSCCCHHHHHTCCCCCSTTTTTCCCHHHHHHHHCCCGGGTTCCCCEEEEEEETTEEEEEEEECCTTCCEEEEEEEG
T ss_pred             CCceeeeeccccccccccchhhhccccccHHHHHHHHHccccccCCCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999998899999999999


Q ss_pred             CCccccccccCCCcHHHHHHHHHHHHHHHHHhhcccccccCcccccCcccccccCC-CCCCceEEEeecCcccccCCcee
Q 023961           81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTE-NRRPFRALLDVGLVKTTTGNRVF  159 (274)
Q Consensus        81 ~eL~k~g~k~g~tN~~AAy~tGlLlA~Ral~k~~~~~~y~Gi~e~~g~~~~ve~~~-~~~~f~~vLD~Gl~r~t~g~RVf  159 (274)
                      +||+++||+++++|++|||+||+|||+|||++||||++|+|++++||++|+||++| +|+||+||||+||+|||+|||||
T Consensus        81 ~El~k~g~k~~~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~e~~g~~~~ve~~~~~~~~f~~~LDvGl~rtttG~RVf  160 (297)
T 3u5e_D           81 HELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVF  160 (297)
T ss_dssp             GGGGGGTCCSCTTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCSSCCCCCCCCCCCSSSCCCCBCEEECTTCCCCTTCSHH
T ss_pred             cchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCcccccCccccccceeccccccCCCCceeEEEecCCCccCccceeh
Confidence            99999999999999999999999999999999999999999999999999999987 79999999999999999999999


Q ss_pred             eeecccccCCccccCCccccCCCCCCccCCCHHhhhhhcccccHHHHHHHhcccChHHHHhhHHHHHHcCCCcchHHHHH
Q 023961          160 GALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELY  239 (274)
Q Consensus       160 aalKGA~DgGL~iPh~~~~fp~~~~~~k~~~ae~~~~ri~G~hva~Y~~~L~eed~e~yk~qFS~yik~~~~p~~~e~~y  239 (274)
                      ||||||+||||+||||+++|||||+|+++||||+|++||+|+|||+||++|+|||||+|++|||+||++||+||+||+||
T Consensus       161 aalKGA~DgGL~IPhs~~~fpg~d~e~k~~~ae~~~~~I~G~hVa~Ym~~L~eedee~yk~qFs~yik~~i~~~~~e~~y  240 (297)
T 3u5e_D          161 GALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSLEDIY  240 (297)
T ss_dssp             HHHHHHHHHTCBCCCCSTTSSSEETTTTEECHHHHHHHHTTHHHHHHHHHTTTTCHHHHHHTTHHHHHTTCCGGGHHHHH
T ss_pred             hhhhcccccCcccCCCcccccCccccccccCHHHHHHHhcCccHHHHHHHHhhhCHHHHHHHHHHHHHcCCChhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCC-----cccccCCCCCCCC
Q 023961          240 KKVHAAIRADPNQKKSEKKPP-----AEHKRYGQCIMWL  273 (274)
Q Consensus       240 ~~~~~~I~~~p~~~~~~k~~~-----~~~k~~~~~kms~  273 (274)
                      ++||++|++||++++++++.+     .++|+||++||||
T Consensus       241 ~~~h~~Ir~~P~~~k~~~~k~~~~~~~~~k~~~~~klt~  279 (297)
T 3u5e_D          241 TSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSK  279 (297)
T ss_dssp             HHHHHHHHHCCSCCCCCCSSCHHHHHHHHHTTCCCCCCH
T ss_pred             HHHHHHHHhCcccccccccccccccchhccccCcccCCH
Confidence            999999999999887776543     3568999999997
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M Back     alignment and structure
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ... Back     alignment and structure
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ... Back     alignment and structure
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1 Back     alignment and structure
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ... Back     alignment and structure
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P Back     alignment and structure
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>4gmn_B 60S ribosomal protein L5-like protein; ARM, heat, solenoid, linear motif, nuclear transport, chaper ribosome assembly, RPL11, KAP104; 2.95A {Chaetomium thermophilum} Back     alignment and structure
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ... Back     alignment and structure
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K* Back     alignment and structure
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 274
d1vqon1186 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {A 3e-51
d2gycm1113 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {E 7e-04
d1ovya_97 c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacill 0.003
>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 186 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  163 bits (415), Expect = 3e-51
 Identities = 68/229 (29%), Positives = 99/229 (43%), Gaps = 52/229 (22%)

Query: 11  AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIA 70
           A   RY+V  +RRRE +TDY  R+RL+        + K R V R +NK + AQ+++    
Sbjct: 1   ATGPRYKVPMRRRREARTDYHQRLRLLK-------SGKPRLVARKSNKHVRAQLVTLGPN 53

Query: 71  GDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDY 130
           GD  LASA++ +L  YG E    N  +AY TGLL   R  +                   
Sbjct: 54  GDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQE------------------- 94

Query: 131 SVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSEKRFAGFSKDSKQLD 190
                       A+LD+GL   T G++VF   +GA+D GLDIPH++   A +        
Sbjct: 95  -------AGVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADW-------- 139

Query: 191 AEVHRKYIYCGHVAAYMRTLMED------EPEKYQSHFCEYIKRGIEAD 233
                +     H+A Y   L E       +      HF E  +  ++ D
Sbjct: 140 -----QRTRGAHIAEYDEQLEEPLYSGDFDAADLPEHFDELRETLLDGD 183
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]} Length = 113 Back     information, alignment and structure
>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]} Length = 97 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query274
d1vqon1186 Ribosomal protein L18 (L18p) {Archaeon Haloarcula 100.0
d2gycm1113 Ribosomal protein L18 (L18p) {Escherichia coli [Ta 99.95
d1ovya_97 Ribosomal protein L18 (L18p) {Bacillus stearotherm 99.95
d2j01s186 Ribosomal protein L18 (L18p) {Thermus thermophilus 99.91
d2zjrl1104 Ribosomal protein L18 (L18p) {Deinococcus radiodur 99.9
d2uubk1119 Ribosomal protein S11 {Thermus thermophilus [TaxId 95.99
d2qalk1117 Ribosomal protein S11 {Escherichia coli [TaxId: 56 95.32
>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=4.5e-70  Score=476.52  Aligned_cols=184  Identities=38%  Similarity=0.583  Sum_probs=174.6

Q ss_pred             cccccccccccccccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCcccccccc
Q 023961           11 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEV   90 (274)
Q Consensus        11 ay~~ryqvk~RRRRegKTdY~~R~rli~qdknky~s~KpRLvVrrTNk~IiaQIi~~~~~GD~tLasAsS~eL~k~g~k~   90 (274)
                      |..+||||||||||||||||++|++|+.++       +||||||+||+|||||||+++++||.|||||||+||+++||+.
T Consensus         1 a~g~r~~vk~RRRRe~kT~y~~R~rl~~s~-------kpRLvVrrSNk~IyaQII~~d~~gd~vlaSAsS~el~k~g~k~   73 (186)
T d1vqon1           1 ATGPRYKVPMRRRREARTDYHQRLRLLKSG-------KPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEA   73 (186)
T ss_dssp             CCSTTCCCCCHHHHTTCCCHHHHHHHHTTC-------SCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGSCCS
T ss_pred             CCCcchhhHHHHHHhhhhhHHHHHHHhcCC-------CCeEEEEEeCCceEEEEEEecCCCCEEEEEEecchhhhhcccc
Confidence            568999999999999999999999999765       7999999999999999999888999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHhhcccccccCcccccCcccccccCCCCCCceEEEeecCcccccCCceeeeecccccCCc
Q 023961           91 GLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGL  170 (274)
Q Consensus        91 g~tN~~AAy~tGlLlA~Ral~k~~~~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vLD~Gl~r~t~g~RVfaalKGA~DgGL  170 (274)
                      +++|++|||+||+|||+||+++        ||++                  |+||+|+.+++.||||||+||||+|+||
T Consensus        74 ~~~N~~AAy~~G~liA~ra~~~--------gi~~------------------vvfD~G~~~~~yhgRV~A~akgard~GL  127 (186)
T d1vqon1          74 PTGNMPSAYLTGLLAGLRAQEA--------GVEE------------------AVLDIGLNSPTPGSKVFAIQEGAIDAGL  127 (186)
T ss_dssp             CSSSHHHHHHHHHHHHHHHHHT--------TCCB------------------CEEECTTSCCCTTCHHHHHHHHHHHTTC
T ss_pred             CccHHHHHHHhHHHHHHHHHhh--------cccc------------------eEEeeCCCCCCccchHHHHHHHHHhcCc
Confidence            9999999999999999999999        9998                  9999999999999999999999999999


Q ss_pred             cccCCccccCCCCCCccCCCHHhhhhhcccccHHHHHHHhcccChHHHHhhHHHHHHcCCCcchHHHHHHHHHHHHhcCC
Q 023961          171 DIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADP  250 (274)
Q Consensus       171 ~iPh~~~~fp~~~~~~k~~~ae~~~~ri~G~hva~Y~~~L~eed~e~yk~qFS~yik~~~~p~~~e~~y~~~~~~I~~~p  250 (274)
                      +||||+++|||+             +||+|+|||+||+.|+||           |++++++|++||+||++++++|.+|+
T Consensus       128 ~Iph~~~~~p~~-------------~ri~G~hia~y~~~l~~e-----------~~~~~~~~~~~~~~f~~~~~~i~~~~  183 (186)
T d1vqon1         128 DIPHNDDVLADW-------------QRTRGAHIAEYDEQLEEP-----------LYSGDFDAADLPEHFDELRETLLDGD  183 (186)
T ss_dssp             BCCCCGGGSCCH-------------HHHHTHHHHHHHHSCSSC-----------SSSSCSCSSCCHHHHHHHHHHHHSSS
T ss_pred             cCCCCCccCCCc-------------ccccCHhHHHHHHHHHHH-----------HhhcCCCHHHHHHHHHHHHHhccccc
Confidence            999999999994             799999999999999975           44555599999999999999999998


Q ss_pred             C
Q 023961          251 N  251 (274)
Q Consensus       251 ~  251 (274)
                      .
T Consensus       184 i  184 (186)
T d1vqon1         184 I  184 (186)
T ss_dssp             C
T ss_pred             c
Confidence            5
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure