Citrus Sinensis ID: 024036

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
MKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQKGRVD
ccEEEEcccccccccHHHccccccccccccHHHHHHHHHHHHccEEEcccccccccccccccccEEEEEccccEEEcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccc
cEEEEEEcccccccHHEHcccccHHHHHHHHHHHHHHHHHHcccEEEEHHHcccEcHHHcEEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcEEEcccHHHHHHHHHccccccccHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHccccEEEEccccEEEEccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
mklcfvkppvfeeswKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLyiplmlgsckkvkvtnnemiihggsgnqvYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMeegiipggGVALLHASEeleklpamnigEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLlgqenpdleydpprdeYVDAVKsaivdpplkLIRNELDDAVSYFVSRWCSTEKLQRQKGRVD
mklcfvkppvfeeswkavYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVTNNEMIihggsgnqvyIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILkvggattaesrkkrkRATNALNAAKAAMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQenpdleydpprDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSrwcsteklqrqkgrvd
MKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESrkkrkratnalnaakaaMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQKGRVD
**LCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGG*************************EGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQE**********DEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCST***********
MKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQKG***
MKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGG***************ALNAAKAAMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTE**********
MKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQK****
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oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQKGRVD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query273 2.2.26 [Sep-21-2011]
P29197577 Chaperonin CPN60, mitocho yes no 0.879 0.415 0.505 1e-62
Q05046575 Chaperonin CPN60-2, mitoc N/A no 0.890 0.422 0.492 1e-61
Q05045575 Chaperonin CPN60-1, mitoc N/A no 0.890 0.422 0.492 2e-61
P29185577 Chaperonin CPN60-1, mitoc N/A no 0.904 0.428 0.498 4e-61
Q43298576 Chaperonin CPN60-2, mitoc N/A no 0.904 0.428 0.498 3e-60
Q8L7B5585 Chaperonin CPN60-like 1, no no 0.890 0.415 0.488 8e-59
P35480587 Chaperonin CPN60, mitocho N/A no 0.864 0.402 0.492 1e-56
Q93ZM7572 Chaperonin CPN60-like 2, no no 0.864 0.412 0.428 6e-48
Q2WAW8552 60 kDa chaperonin OS=Magn yes no 0.813 0.402 0.404 1e-41
B2V8F1544 60 kDa chaperonin OS=Sulf yes no 0.853 0.428 0.407 3e-41
>sp|P29197|CH60A_ARATH Chaperonin CPN60, mitochondrial OS=Arabidopsis thaliana GN=CPN60 PE=1 SV=2 Back     alignment and function desciption
 Score =  240 bits (612), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 136/269 (50%), Positives = 184/269 (68%), Gaps = 29/269 (10%)

Query: 1   MKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPL-- 58
           +K+C +K P F E                N KA ++D+A LTGG V+T   + L + L  
Sbjct: 301 IKVCAIKAPGFGE----------------NRKANLQDLAALTGGEVIT---DELGMNLEK 341

Query: 59  ----MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQM 114
               MLG+CKKV V+ ++ +I  G+G++  IE+RCEQ+  AIE+STSDY+ + L+ERL  
Sbjct: 342 VDLSMLGTCKKVTVSKDDTVILDGAGDKKGIEERCEQIRSAIELSTSDYDKEKLQERLAK 401

Query: 115 LSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPGGGVALLHASEELEKLPA 174
           LS  VA+LK+GGA+ AE  +K+ R T+ALNA KAA+EEGI+PGGGVALL+A+ ELEKLP 
Sbjct: 402 LSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGILPGGGVALLYAARELEKLPT 461

Query: 175 MNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVK 233
            N  +KIGV+++Q+A+K P+YTIAS AG + +V V KLL Q+NPDL YD  + EYVD VK
Sbjct: 462 ANFDQKIGVQIIQNALKTPVYTIASNAGVEGAVIVGKLLEQDNPDLGYDAAKGEYVDMVK 521

Query: 234 SAIVDPPLKLIRNELDDAVSYFVSRWCST 262
           + I+D PLK+IR  L DA S  VS   +T
Sbjct: 522 AGIID-PLKVIRTALVDAAS--VSSLLTT 547
Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.
Arabidopsis thaliana (taxid: 3702)
>sp|Q05046|CH62_CUCMA Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1 Back     alignment and function description
>sp|Q05045|CH61_CUCMA Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1 Back     alignment and function description
>sp|P29185|CH61_MAIZE Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2 Back     alignment and function description
>sp|Q43298|CH62_MAIZE Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1 Back     alignment and function description
>sp|Q8L7B5|CH60B_ARATH Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=1 SV=1 Back     alignment and function description
>sp|P35480|CH60_BRANA Chaperonin CPN60, mitochondrial OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|Q93ZM7|CH60C_ARATH Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=1 SV=2 Back     alignment and function description
>sp|Q2WAW8|CH60_MAGSA 60 kDa chaperonin OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=groL PE=3 SV=1 Back     alignment and function description
>sp|B2V8F1|CH60_SULSY 60 kDa chaperonin OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=groL PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query273
297835484 577 hypothetical protein ARALYDRAFT_898985 [ 0.853 0.403 0.515 3e-61
15229559 577 chaperonin CPN60 [Arabidopsis thaliana] 0.879 0.415 0.505 6e-61
16221 577 chaperonin hsp60 [Arabidopsis thaliana] 0.879 0.415 0.505 6e-61
225433375 575 PREDICTED: chaperonin CPN60-2, mitochond 0.879 0.417 0.494 1e-60
115482382 574 Os10g0462900 [Oryza sativa Japonica Grou 0.904 0.430 0.498 1e-60
110289207 634 Chaperonin CPN60-1, mitochondrial precur 0.904 0.389 0.498 2e-60
449458874 575 PREDICTED: chaperonin CPN60-2, mitochond 0.890 0.422 0.503 2e-60
359477860 571 PREDICTED: chaperonin CPN60-2, mitochond 0.842 0.402 0.526 4e-60
115450675 577 Os03g0143400 [Oryza sativa Japonica Grou 0.904 0.428 0.498 5e-60
461736 575 RecName: Full=Chaperonin CPN60-2, mitoch 0.890 0.422 0.492 8e-60
>gi|297835484|ref|XP_002885624.1| hypothetical protein ARALYDRAFT_898985 [Arabidopsis lyrata subsp. lyrata] gi|297331464|gb|EFH61883.1| hypothetical protein ARALYDRAFT_898985 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 134/260 (51%), Positives = 180/260 (69%), Gaps = 27/260 (10%)

Query: 1   MKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPL-- 58
           +K+C +K P F E                N KA ++D+A LTGG V+T   + L + L  
Sbjct: 301 IKVCAIKAPGFGE----------------NRKANLQDLAALTGGEVIT---DELGMNLEK 341

Query: 59  ----MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQM 114
               MLG+CKKV V+ ++ +I  G+G++  IE+RCEQ+  AIE+STSDY+ + L+ERL  
Sbjct: 342 VDLGMLGTCKKVTVSKDDTVILDGAGDKKGIEERCEQIRSAIELSTSDYDKEKLQERLAK 401

Query: 115 LSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPGGGVALLHASEELEKLPA 174
           LS  VA+LK+GGA+ AE  +K+ R T+ALNA KAA+EEGI+PGGGVALL+A+ ELEKLP 
Sbjct: 402 LSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGILPGGGVALLYAARELEKLPT 461

Query: 175 MNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVK 233
            N  +KIGV+++Q+A+K P+YTIAS AG + +V V KLL Q+NPDL YD  + EYVD VK
Sbjct: 462 ANFDQKIGVQIIQNALKTPVYTIASNAGVEGAVIVGKLLEQDNPDLGYDAAKGEYVDMVK 521

Query: 234 SAIVDPPLKLIRNELDDAVS 253
           S I+D PLK+IR  L DA S
Sbjct: 522 SGIID-PLKVIRTALVDAAS 540

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|15229559|ref|NP_189041.1| chaperonin CPN60 [Arabidopsis thaliana] gi|12644189|sp|P29197.2|CH60A_ARATH RecName: Full=Chaperonin CPN60, mitochondrial; AltName: Full=HSP60; Flags: Precursor gi|9294668|dbj|BAB03017.1| chaperonin hsp60, mitochondrial precursor (HSP60) [Arabidopsis thaliana] gi|20466256|gb|AAM20445.1| mitochondrial chaperonin hsp60 [Arabidopsis thaliana] gi|34098917|gb|AAQ56841.1| At3g23990 [Arabidopsis thaliana] gi|332643321|gb|AEE76842.1| chaperonin CPN60 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|16221|emb|CAA77646.1| chaperonin hsp60 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225433375|ref|XP_002285608.1| PREDICTED: chaperonin CPN60-2, mitochondrial isoform 1 [Vitis vinifera] gi|297741894|emb|CBI33329.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|115482382|ref|NP_001064784.1| Os10g0462900 [Oryza sativa Japonica Group] gi|22758324|gb|AAN05528.1| mitochondrial chaperonin-60 [Oryza sativa Japonica Group] gi|113639393|dbj|BAF26698.1| Os10g0462900 [Oryza sativa Japonica Group] gi|218184691|gb|EEC67118.1| hypothetical protein OsI_33923 [Oryza sativa Indica Group] gi|222612963|gb|EEE51095.1| hypothetical protein OsJ_31804 [Oryza sativa Japonica Group] gi|313575773|gb|ADR66966.1| 60 kDa chaperonin [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|110289207|gb|AAP54159.2| Chaperonin CPN60-1, mitochondrial precursor, putative, expressed [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|449458874|ref|XP_004147171.1| PREDICTED: chaperonin CPN60-2, mitochondrial-like [Cucumis sativus] gi|449498579|ref|XP_004160576.1| PREDICTED: chaperonin CPN60-2, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359477860|ref|XP_003632036.1| PREDICTED: chaperonin CPN60-2, mitochondrial isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|115450675|ref|NP_001048938.1| Os03g0143400 [Oryza sativa Japonica Group] gi|108706134|gb|ABF93929.1| Chaperonin CPN60-1, mitochondrial precursor, putative, expressed [Oryza sativa Japonica Group] gi|113547409|dbj|BAF10852.1| Os03g0143400 [Oryza sativa Japonica Group] gi|215704319|dbj|BAG93753.1| unnamed protein product [Oryza sativa Japonica Group] gi|218192069|gb|EEC74496.1| hypothetical protein OsI_09970 [Oryza sativa Indica Group] gi|222624174|gb|EEE58306.1| hypothetical protein OsJ_09368 [Oryza sativa Japonica Group] gi|284431758|gb|ADB84620.1| chaperonin [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|461736|sp|Q05046.1|CH62_CUCMA RecName: Full=Chaperonin CPN60-2, mitochondrial; AltName: Full=HSP60-2; Flags: Precursor gi|478786|pir||S29316 chaperonin 60 - cucurbit gi|12546|emb|CAA50218.1| chaperonin 60 [Cucurbita cv. Kurokawa Amakuri] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query273
TAIR|locus:2076081577 HSP60 "heat shock protein 60" 0.827 0.391 0.510 8e-53
TAIR|locus:2046590585 HSP60-2 "heat shock protein 60 0.827 0.386 0.480 2.5e-49
TAIR|locus:2087959572 HSP60-3A "heat shock protein 6 0.824 0.393 0.431 2.6e-40
GENEDB_PFALCIPARUM|PF10_0153580 PF10_0153 "hsp60" [Plasmodium 0.860 0.405 0.359 2.4e-36
UNIPROTKB|Q8IJN9580 PF10_0153 "Heat shock protein 0.860 0.405 0.359 2.4e-36
WB|WBGene00002025568 hsp-60 [Caenorhabditis elegans 0.860 0.413 0.351 1.6e-32
TIGR_CMR|CBU_1718552 CBU_1718 "chaperonin, 60 kDa" 0.809 0.400 0.362 6.3e-32
UNIPROTKB|G4NAR5589 MGG_03165 "Heat shock protein 0.809 0.375 0.372 1.2e-31
ASPGD|ASPL0000003680588 AN6089 [Emericella nidulans (t 0.820 0.380 0.369 2.6e-31
UNIPROTKB|Q5ZL72573 HSPD1 "60 kDa heat shock prote 0.816 0.389 0.360 3e-31
TAIR|locus:2076081 HSP60 "heat shock protein 60" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 118/231 (51%), Positives = 159/231 (68%)

Query:    27 YEENCKAIMRDIAILTGGRVVT--AASNSLYIPL-MLGSCKKVKVTNNEMIIHGGSGNQV 83
             + EN KA ++D+A LTGG V+T     N   + L MLG+CKKV V+ ++ +I  G+G++ 
Sbjct:   311 FGENRKANLQDLAALTGGEVITDELGMNLEKVDLSMLGTCKKVTVSKDDTVILDGAGDKK 370

Query:    84 YIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXX 143
              IE+RCEQ+  AIE+STSDY+ + L+ERL  LS  VA+LK+GGA+ AE            
Sbjct:   371 GIEERCEQIRSAIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDAL 430

Query:   144 XXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGF 203
                   +EEGI+PGGGVALL+A+ ELEKLP  N  +KIGV+++Q+A+K P+YTIAS AG 
Sbjct:   431 NATKAAVEEGILPGGGVALLYAARELEKLPTANFDQKIGVQIIQNALKTPVYTIASNAGV 490

Query:   204 QVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 253
             + +V V KLL Q+NPDL YD  + EYVD VK+ I+DP LK+IR  L DA S
Sbjct:   491 EGAVIVGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDP-LKVIRTALVDAAS 540
GO:0005524 "ATP binding" evidence=IEA;IDA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006457 "protein folding" evidence=IEA;RCA
GO:0042026 "protein refolding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0051131 "chaperone-mediated protein complex assembly" evidence=TAS
GO:0007005 "mitochondrion organization" evidence=TAS
GO:0009408 "response to heat" evidence=IEP;RCA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005759 "mitochondrial matrix" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA;IDA
GO:0005507 "copper ion binding" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0006626 "protein targeting to mitochondrion" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
TAIR|locus:2046590 HSP60-2 "heat shock protein 60-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087959 HSP60-3A "heat shock protein 60-3A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF10_0153 PF10_0153 "hsp60" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IJN9 PF10_0153 "Heat shock protein 60" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
WB|WBGene00002025 hsp-60 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1718 CBU_1718 "chaperonin, 60 kDa" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|G4NAR5 MGG_03165 "Heat shock protein 60" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000003680 AN6089 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZL72 HSPD1 "60 kDa heat shock protein, mitochondrial" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query273
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 2e-72
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 3e-67
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 2e-61
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 2e-61
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 4e-57
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 1e-54
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 6e-50
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 4e-47
CHL00093529 CHL00093, groEL, chaperonin GroEL 1e-43
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 3e-43
PLN03167600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 9e-34
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-26
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 1e-24
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 8e-23
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 1e-06
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information 
 Score =  230 bits (589), Expect = 2e-72
 Identities = 110/257 (42%), Positives = 158/257 (61%), Gaps = 22/257 (8%)

Query: 1   MKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPL-- 58
           +K+C VK P F        G+          KA++ DIAILTGG V++         +  
Sbjct: 268 LKVCAVKAPGF--------GDRR--------KAMLEDIAILTGGTVISEELGLKLEDVTL 311

Query: 59  -MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSS 117
             LG  KKV VT ++  I GG+G++  I+ R  Q+   IE +TSDY+ + L+ERL  LS 
Sbjct: 312 EDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSG 371

Query: 118 RVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPGGGVALLHASEELEKLPAMNI 177
            VA++KVGGAT  E ++K+ R  +ALNA +AA+EEGI+PGGGVALL AS  L+KL A+N 
Sbjct: 372 GVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLRASPALDKLKALNG 431

Query: 178 GEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAI 236
            EK+G+++++ A++ PL  IA  AG   S VVEK+L   +    YD    EYVD +++ I
Sbjct: 432 DEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD-GFGYDAATGEYVDMIEAGI 490

Query: 237 VDPPLKLIRNELDDAVS 253
           +D P K++R+ L +A S
Sbjct: 491 ID-PTKVVRSALQNAAS 506

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 273
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
CHL00093529 groEL chaperonin GroEL 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 99.96
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 99.54
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 99.5
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 94.71
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=3.5e-58  Score=454.98  Aligned_cols=251  Identities=38%  Similarity=0.597  Sum_probs=239.7

Q ss_pred             CcEEEEcCCCcccchhhhcccchhhhhhhhhhhHHHHHHHHhCCeEecccCC---CCCCCCCceecceEEEccCcEEEEc
Q 024036            1 MKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIHG   77 (273)
Q Consensus         1 ~~~~av~~p~~g~~~~~~~~~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~---~~~~~~~LG~a~~v~~~~~~~~~i~   77 (273)
                      ++++|||+|+||                +.++++|+|||++|||+++++..+   +++++++||+|++|+++++++++++
T Consensus       271 ~~i~av~~~~~~----------------~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~~~~~~i~  334 (545)
T PRK12852        271 LKVAAVKAPGFG----------------DRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVN  334 (545)
T ss_pred             ceEEEEecCCcc----------------cchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEccEEEEEe
Confidence            369999999999                999999999999999999995322   8888899999999999999999999


Q ss_pred             CCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Q 024036           78 GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPG  157 (273)
Q Consensus        78 g~~~~~~i~~ri~~l~~~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~gvVpG  157 (273)
                      +++++..+..|+++|+.+++++.+.|++++|+||+++|+++++||+|||+|+++++|+||+++||+|++|+++++|||||
T Consensus       335 ~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g~VpG  414 (545)
T PRK12852        335 GAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPG  414 (545)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHhccCCCChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcCCCCCeeeeCCCCcccchhhcCc
Q 024036          158 GGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAI  236 (273)
Q Consensus       158 GGaael~~s~~L~~~~~~~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~~~~~~G~d~~~g~~~Dm~~~GI  236 (273)
                      ||++|+++|.+|+++...++++|+|+++|++||++||++||+|||+|+. ++++|++.+++++|||+.+|+++||++.||
T Consensus       415 GGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~GI  494 (545)
T PRK12852        415 GGVALLRAKKAVGRINNDNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMVAKGI  494 (545)
T ss_pred             chHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCcCCCcccHHhCcC
Confidence            9999999999999987667889999999999999999999999999999 999998866678999999999999999999


Q ss_pred             ccCchHHHHHHHHHHHHHHHHHHhhHHHhhcc
Q 024036          237 VDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQ  268 (273)
Q Consensus       237 ~DP~~~Vk~~al~~A~~~A~~lL~~~e~i~~~  268 (273)
                      ||| +.||+++|++|+++|++||.+|++|...
T Consensus       495 ~Dp-~~vk~~al~~A~e~a~~iL~id~iI~~~  525 (545)
T PRK12852        495 IDP-AKVVRTALQDAASVAGLLVTTEAMVAEL  525 (545)
T ss_pred             CcC-hHHHHHHHHHHHHHHHHHHhHHHHhhcC
Confidence            999 9999999999999999999999988743

>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query273
1iok_A545 Crystal Structure Of Chaperonin-60 From Paracoccus 1e-29
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 4e-28
1j4z_A547 Structural And Mechanistic Basis For Allostery In T 3e-24
1kp8_A547 Structural Basis For Groel-Assisted Protein Folding 3e-24
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 4e-24
4aaq_A548 Atp-Triggered Molecular Mechanics Of The Chaperonin 5e-24
1oel_A547 Conformational Variability In The Refined Structure 6e-24
1gr5_A547 Solution Structure Of Apo Groel By Cryo-Electron Mi 6e-24
1grl_A548 The Crystal Structure Of The Bacterial Chaperonin G 6e-24
1sx3_A525 Groel14-(Atpgammas)14 Length = 525 6e-24
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 6e-24
3c9v_A526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 6e-24
1aon_A547 Crystal Structure Of The Asymmetric Chaperonin Comp 6e-24
3cau_A526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 6e-24
1ss8_A524 Groel Length = 524 7e-24
2eu1_A548 Crystal Structure Of The Chaperonin Groel-E461k Len 8e-24
3rtk_A546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 5e-23
1sjp_A504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 5e-23
1fy9_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 5e-08
1fya_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 5e-08
1la1_A192 Gro-El Fragment (Apical Domain) Comprising Residues 6e-08
3m6c_A194 Crystal Structure Of Mycobacterium Tuberculosis Gro 6e-08
1kid_A203 Groel (Hsp60 Class) Fragment (Apical Domain) Compri 5e-07
3osx_A201 Crystal Structure Of Apical Domain Of Insecticidal 1e-05
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure 
Iteration: 1

 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 126/234 (53%), Gaps = 11/234 (4%)
Query: 27  YEENCKAIMRDIAILTGGRVVTAASNSLYIPL------MLGSCKKVKVTNNEMIIHGGSG 80
           + +  KA+++DIAILTGG+V+   S  L + L      MLG  KKV +  +   I  G+G
Sbjct: 281 FGDRRKAMLQDIAILTGGQVI---SEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAG 337
Query: 81  NQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXX 140
            +  IE R  Q+   IE +TSDY+ + L+ER+  L+  VA+++VGG T  E         
Sbjct: 338 EKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVD 397
Query: 141 XXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIAST 200
                    ++EGI+ GGGVAL+  ++ LE L   N  +  G+ +++ A++ P+  IA  
Sbjct: 398 DALNATRAAVQEGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAEN 457
Query: 201 AGFQVSVVE-KLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 253
           AG   +VV  K+    +    ++   +EY D  K  ++DP  K++R  L+DA S
Sbjct: 458 AGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPA-KVVRTALEDAAS 510
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues 188-379 Length = 192 Back     alignment and structure
>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1 Apical Domain Length = 194 Back     alignment and structure
>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 191-376, Mutant With Ala 262 Replaced With Leu And Ile 267 Replaced With Met Length = 203 Back     alignment and structure
>pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel From Xenorhapdus Nematophila Length = 201 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query273
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 7e-61
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 3e-59
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 2e-57
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 3e-57
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 4e-18
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 4e-18
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 3e-05
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
 Score =  200 bits (510), Expect = 7e-61
 Identities = 86/229 (37%), Positives = 137/229 (59%), Gaps = 11/229 (4%)

Query: 32  KAIMRDIAILTGGRVVTAASNSLYIPL------MLGSCKKVKVTNNEMIIHGGSGNQVYI 85
           KA+++DIAILTGG+V+   S  L + L      MLG  KKV +  +   I  G+G +  I
Sbjct: 286 KAMLQDIAILTGGQVI---SEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEI 342

Query: 86  EDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNA 145
           E R  Q+   IE +TSDY+ + L+ER+  L+  VA+++VGG T  E ++++ R  +ALNA
Sbjct: 343 EARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNA 402

Query: 146 AKAAMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQV 205
            +AA++EGI+ GGGVAL+  ++ LE L   N  +  G+ +++ A++ P+  IA  AG   
Sbjct: 403 TRAAVQEGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDG 462

Query: 206 SVV-EKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 253
           +VV  K+    +    ++   +EY D  K  ++D P K++R  L+DA S
Sbjct: 463 AVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVID-PAKVVRTALEDAAS 510
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Length = 194 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Length = 201 Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Length = 145 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query273
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 99.96
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 99.95
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 99.63
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 98.97
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 98.44
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
Probab=100.00  E-value=4.1e-63  Score=487.93  Aligned_cols=249  Identities=34%  Similarity=0.511  Sum_probs=235.1

Q ss_pred             CcEEEEcCCCcccchhhhcccchhhhhhhhhhhHHHHHHHHhCCeEecccCC---CCCCCCCceecceEEEccCcEEEEc
Q 024036            1 MKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIHG   77 (273)
Q Consensus         1 ~~~~av~~p~~g~~~~~~~~~~~~~~~~~~~k~~ledia~~tG~~iv~~~~~---~~~~~~~LG~a~~v~~~~~~~~~i~   77 (273)
                      ++|||||+|+||                +.++++|+|||++|||++++++++   +++++++||+|++|++++++++++.
T Consensus       269 ~~v~aVk~~~~~----------------~~rk~~le~ia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~i~~d~~~~i~  332 (546)
T 3rtk_A          269 FKSVAVKAPGFG----------------DRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVVVTKDETTIVE  332 (546)
T ss_dssp             CCEEEEECSSCH----------------HHHHHHHHHHHHHHTCCCBCSSSSCCSTTCCTTTSEEEEEEEECSSCEEEEE
T ss_pred             eEEEEecccccc----------------ccchhhHHHHHHHhCCEEeeccccCccccCCHhhCCeeEEEEEcCCeEEEEc
Confidence            479999999999                999999999999999999996543   8899999999999999999999999


Q ss_pred             CCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Q 024036           78 GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPG  157 (273)
Q Consensus        78 g~~~~~~i~~ri~~l~~~i~~~~s~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~l~DAl~a~r~al~~gvVpG  157 (273)
                      ++++++.+..|+++|+++++.++|+|++++|+|||++|+|++|||+|||+|+++++|+||+++||||++|+++++|+|||
T Consensus       333 g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~g~~atI~vrG~te~~l~E~er~l~DAl~a~r~av~~giVpG  412 (546)
T 3rtk_A          333 GAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAG  412 (546)
T ss_dssp             ECSCHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCEEEEECCCCSSTHHHHHHHHHHHHHHHHHHHHHHCEEET
T ss_pred             CCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHhccCCCChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHHHcCCCCCeeeeCCCCcccchhhcCc
Q 024036          158 GGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAI  236 (273)
Q Consensus       158 GGaael~~s~~L~~~~~~~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl~~~~~~~~G~d~~~g~~~Dm~~~GI  236 (273)
                      ||++|+++|.+|++++ .++++|+|+++|++||+.||++||+|||+|+. ++++|++.. ..+|||+.+|+|.||++.||
T Consensus       413 GGa~e~~~s~~L~~~~-~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~~-~~~G~d~~~g~~~Dm~~~gI  490 (546)
T 3rtk_A          413 GGVTLLQAAPTLDELK-LEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLP-AGHGLNAQTGVYEDLLAAGV  490 (546)
T ss_dssp             TTHHHHTTGGGSTTSC-CCTTHHHHHHHHHHHTTHHHHHHHTTTTCCHHHHHHHHHHSC-TTEECCSSSCCCEETTTTTC
T ss_pred             CcHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc-CCEeEcCCCCcEeeHHHcCC
Confidence            9999999999999987 78999999999999999999999999999999 999999863 56999999999999999999


Q ss_pred             ccCchHHHHHHHHHHHHHHHHHHhhHHHhhcc
Q 024036          237 VDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQ  268 (273)
Q Consensus       237 ~DP~~~Vk~~al~~A~~~A~~lL~~~e~i~~~  268 (273)
                      ||| ++||+++|++|+++|++||++|++|...
T Consensus       491 ~dp-~~vk~~al~~A~e~A~~iL~id~iI~~~  521 (546)
T 3rtk_A          491 ADP-VKVTRSALQNAASIAGLFLTTEAVVADK  521 (546)
T ss_dssp             EEE-HHHHHHHHHHHHHHHHHHHHCC------
T ss_pred             Eec-HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999 9999999999999999999999998753
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 273
d1kida_193 c.8.5.1 (A:) GroEL, A domain {Escherichia coli [Ta 2e-19
d1sjpa2184 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium 3e-17
d1ioka2176 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus de 4e-16
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 3e-14
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 5e-11
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 1e-09
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 3e-07
d1srva_145 c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus 7e-06
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 2e-05
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 1e-04
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 3e-04
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 0.003
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Length = 193 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

 Score = 81.8 bits (202), Expect = 2e-19
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 30  NCKAIMRDIAILTGGRVVTAASNSLYIPL---MLGSCKKVKVTNNEMIIHGGSGNQVYIE 86
             KA+++DIA LTGG V++              LG  K+V +  +   I  G G +  I+
Sbjct: 101 RRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQ 160

Query: 87  DRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRV 119
            R  Q+   IE +TSDY+ + L+ER+  L+  V
Sbjct: 161 GRVAQIRQQIEEATSDYDREKLQERVAKLAGGV 193
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 184 Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Length = 176 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Length = 145 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query273
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 99.95
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.94
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.94
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 99.92
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 99.9
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 99.9
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.9
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.88
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 99.84
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 99.82
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 99.51
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 98.53
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 98.5
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 98.47
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 98.43
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 98.1
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 97.65
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=99.95  E-value=5.7e-29  Score=220.46  Aligned_cols=194  Identities=13%  Similarity=0.159  Sum_probs=161.4

Q ss_pred             cceEEEccCcEEEEcCCCChhhHHHHHHHHHHHHhhccCH-------HHHHHHHHHHHhhcCceEEEEecCCCHHHH-HH
Q 024036           63 CKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSD-------YEIKLLEERLQMLSSRVAILKVGGATTAES-RK  134 (273)
Q Consensus        63 a~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~i~~~~s~-------~e~~~L~eRl~~l~g~~atI~vgG~te~~l-~E  134 (273)
                      .+.+.+|+|..+++..-.........+.++........++       +-.+.|++.+..+..        |.++.++ +-
T Consensus        35 ~g~~~iT~Dg~ti~~~~~~~~~~a~~~~~~~~~~~~~~GDGttt~~vl~~~ll~~~~~~i~~--------G~~p~~I~~g  106 (243)
T d1a6db1          35 LGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQ--------NVHPTVISEG  106 (243)
T ss_dssp             TCCEEEECCHHHHHHHSCCCSHHHHHHHHHHTCTTCCCTTHHHHHHHHHHHHHHHHHHHHHT--------TCCHHHHHHH
T ss_pred             CCCeEEecchhhHhhhhhccchHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHc--------CCCHHHHHHH
Confidence            3456788887777777666667777776666655433333       355778998887764        5555544 55


Q ss_pred             HHHHHHHHHHHHHHHHHcC-ccccCcHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHhHHHHHHHHhcCCCHH-HHHHH
Q 024036          135 KRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKL  211 (273)
Q Consensus       135 ~er~l~DAl~a~r~al~~g-vVpGGGaael~~s~~L~~~~~~-~~~~q~gi~~~a~AL~~pp~~La~NaG~d~~-vv~kl  211 (273)
                      .++.++++++.++....+. ++||||++|++++..|.++... .+++|+++++|++||+.||++||+|||+|+. ++.+|
T Consensus       107 ~~~a~~~~~~~L~~~a~~v~~~~ggGa~e~~~a~~l~~~a~~~~g~~q~~i~~~a~Ale~ip~~LaeNaG~d~~~~i~~l  186 (243)
T d1a6db1         107 YRMASEEAKRVIDEISTKIAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKL  186 (243)
T ss_dssp             HHHHHHHHHHHHHHHCEECEEEETTTHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccccccccCCCchhHHHHHHHhhhhhccCCHHHHHHHHHHHHhhccCccccccCCCChhHHHHHH
Confidence            7888888888888877775 9999999999999999998765 8999999999999999999999999999999 99998


Q ss_pred             HcC---CCCCeeeeCCCCcccchhhcCcccCchHHHHHHHHHHHHHHHHHHhhHHHh
Q 024036          212 LGQ---ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKL  265 (273)
Q Consensus       212 ~~~---~~~~~G~d~~~g~~~Dm~~~GI~DP~~~Vk~~al~~A~~~A~~lL~~~e~i  265 (273)
                      +..   ++.++|+|+.+|++.||.+.||||| +.||+++|++|+++|++||.+|++|
T Consensus       187 ~~~h~~~~~~~Gvd~~~g~i~d~~~~gV~dp-~~vk~~ai~~A~e~a~~iL~iD~ii  242 (243)
T d1a6db1         187 RAEHAKGNKTYGINVFTGEIEDMVKNGVIEP-IRVGKQAIESATEAAIMILRIDDVI  242 (243)
T ss_dssp             HHHHHTTCTTEEEETTTTEEEETTTTTCEEE-HHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred             HHHHhCCCCceeEECcCCEEeehHhcccEec-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            763   5678999999999999999999999 9999999999999999999999875
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure