Citrus Sinensis ID: 024116

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
Protein Sequence
MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT
Secondary Structure (PSIPRED)
ccccccccccEEEEEEccccccHHHHHcHHHHHHHHccEEcEEEccccccHHHHHHHHHHHcccccccEEEEEccccccccHHHHHHccccccccccccccHHHHHHHcccccccccccHHHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHcccEEEEcccccccHHHHHccccEEEEEccccccccccccccccEEEEccccccccccccccccccEEEcccccHHHHccccccccccccccHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHccccccEEEEEEEcccHHHHHHHHHHHHHHHHHccEEEEEEEcccccHHHHHHHHHHHHHcccccEEEEcccccccccHHHHHHcccHHHEcccccHHHHHHHHccccccccccHHHHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHcccEEEEEccccccHHHHHccccEEEEcccccccEcHHHcccccEEEEccccccEEEEcccccccEEEEccEcHHHHcccccEEcccccccccHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mkksigkvpgLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSnynqdssingilvqlplpqhldegkilDAVSlekdvdgfhplnignlamrgreplfipctpkgCIELLIRSGVEIMGKNAVVIGrsnivglptslllqRHHATVSIVHAltknpeqitSEADIVIAAAGVANLvrgswlkpgavvldvgtcpvdvsvdpsceygyrlmgDVCYEEAMRLASvitpvpggvgpMTVAMLLSNTLDSAKRAYGFT
Flexible Loop (DISEMBL)
mkksigkvpglavilvgerrdsqtyvRNKIkaceevgiKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTldsakraygft
Low Complexity Region (SEG)
MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT
Disordered region (IsUnstruct)
*******VPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNT***********
Disordered Region (DISOPRED)
****IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF*
Disordered Region (DISEMBL)
MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT
Disordered Region (DISPRO)
*****GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	272	2.2.26 [Sep-21-2011]
Q92BZ4	284	Bifunctional protein FolD	yes	no	0.930	0.890	0.511	3e-73
Q8Y7C5	284	Bifunctional protein FolD	yes	no	0.930	0.890	0.507	4e-73
C1L2R6	284	Bifunctional protein FolD	yes	no	0.930	0.890	0.511	8e-73
B8DFW8	284	Bifunctional protein FolD	yes	no	0.930	0.890	0.507	1e-72
Q71ZW2	284	Bifunctional protein FolD	yes	no	0.930	0.890	0.511	2e-72
A0LE04	285	Bifunctional protein FolD	yes	no	0.919	0.877	0.540	1e-69
P09440	975	C-1-tetrahydrofolate synt	yes	no	0.948	0.264	0.509	2e-69
A0AIG1	284	Bifunctional protein FolD	yes	no	0.937	0.897	0.5	9e-69
A1BF67	295	Bifunctional protein FolD	yes	no	0.970	0.894	0.501	5e-68
B4SGR4	295	Bifunctional protein FolD	yes	no	0.952	0.877	0.515	6e-68

>sp|Q92BZ4|FOLD_LISIN Bifunctional protein FolD OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=folD PE=3 SV=1

 Score =  275 bits (703), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 135/264 (51%), Positives = 189/264 (71%), Gaps = 11/264 (4%)

Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           GK PGLAV+LVG+ + S+TYVRNK K  EE G+KS++ E  +  TE+++L  +   N+D+
Sbjct: 29  GKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPETVTEEKLLKVVEELNEDN 88

Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
           +I+GILVQLPLP+H+ E K++DA+S +KDVDGFHP+N+GNL + G++  F+PCTP G IE
Sbjct: 89  TIHGILVQLPLPKHISEEKVIDAISFDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIE 146

Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA 185
           L+  +G +I GK AVVIGRSNIVG P + LL   +ATV+I H+ TK+  Q+  EADI++ 
Sbjct: 147 LIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVV 206

Query: 186 AAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPV 245
           A G+A  V+  ++KPGA+V+DVG            +   +L GDV +++    A  ITPV
Sbjct: 207 ATGLAKFVKKEYIKPGAIVIDVGM---------DRDENNKLCGDVDFDDVKEQAGFITPV 257

Query: 246 PGGVGPMTVAMLLSNTLDSAKRAY 269
           PGGVGPMT+ MLL+NTL +AKR +
Sbjct: 258 PGGVGPMTITMLLANTLKAAKRIW 281

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.
Listeria innocua serovar 6a (strain CLIP 11262) (taxid: 272626)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: 9

>sp|Q8Y7C5|FOLD_LISMO Bifunctional protein FolD OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=folD PE=3 SV=1

 Score =  274 bits (701), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 134/264 (50%), Positives = 190/264 (71%), Gaps = 11/264 (4%)

Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           GK PGLAV+LVG+ + S+TYVRNK K  EE G+KS++ E  +  TE+++L+ +   N+D 
Sbjct: 29  GKQPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDK 88

Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
           +I+GILVQLPLP+H+ E K++D +S +KDVDGFHP+N+GNL + G++  F+PCTP G IE
Sbjct: 89  TIHGILVQLPLPEHISEEKVIDTISFDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIE 146

Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA 185
           L+  +G +I GK AVVIGRSNIVG P + LL   +ATV+I H+ TK+  Q+  EADI++ 
Sbjct: 147 LIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVV 206

Query: 186 AAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPV 245
           A G+A  V+  ++KPGA+V+DVG            +   +L GDV +++ ++ A  ITPV
Sbjct: 207 ATGLAKFVKKDYIKPGAIVIDVGM---------DRDENNKLCGDVDFDDVVQEAGFITPV 257

Query: 246 PGGVGPMTVAMLLSNTLDSAKRAY 269
           PGGVGPMT+ MLL+NTL +AKR +
Sbjct: 258 PGGVGPMTITMLLANTLKAAKRIW 281

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|C1L2R6|FOLD_LISMC Bifunctional protein FolD OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=folD PE=3 SV=1

 Score =  273 bits (699), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 135/264 (51%), Positives = 189/264 (71%), Gaps = 11/264 (4%)

Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           GK PGLAV+LVG+ + S+TYVRNK K  EE G+KS++ E  +  TE+++L+ +   N+D 
Sbjct: 29  GKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDK 88

Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
           +I+GILVQLPLP+H+ E K++D +S +KDVDGFHP+N+GNL + G++  F+PCTP G IE
Sbjct: 89  TIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIE 146

Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA 185
           L+  +G +I GK AVVIGRSNIVG P + LL   +ATV+I H+ TK+  Q+  EADI++ 
Sbjct: 147 LIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVV 206

Query: 186 AAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPV 245
           A G+A  V+  ++KPGAVV+DVG            +   +L GDV +++ +  A  ITPV
Sbjct: 207 ATGLAKFVKKDYIKPGAVVIDVGM---------DRDENNKLCGDVDFDDVVEEAGFITPV 257

Query: 246 PGGVGPMTVAMLLSNTLDSAKRAY 269
           PGGVGPMT+ MLL+NTL +AKR +
Sbjct: 258 PGGVGPMTITMLLANTLKAAKRIW 281

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Listeria monocytogenes serotype 4b (strain Clip81459) (taxid: 568819)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|B8DFW8|FOLD_LISMH Bifunctional protein FolD OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=folD PE=3 SV=1

 Score =  273 bits (697), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 134/264 (50%), Positives = 189/264 (71%), Gaps = 11/264 (4%)

Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           GK PGLAV+LVG+ + S+TYVRNK K  EE G+KS++ E  +  TE+++L+ +   N+D 
Sbjct: 29  GKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDK 88

Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
           +I+GILVQLPLP+H+ E K++D +S +KDVDGFHP+N+GNL + G++  F+PCTP G IE
Sbjct: 89  TIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIE 146

Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA 185
           L+  +G +I GK AVVIGRSNIVG P + LL   +ATV+I H+ TK+  Q+  EADI++ 
Sbjct: 147 LIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVV 206

Query: 186 AAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPV 245
           A G+A  V+  ++KPGA+V+DVG            +   +L GDV +++ +  A  ITPV
Sbjct: 207 ATGLAKFVKKDYIKPGAIVIDVGM---------DRDENNKLCGDVDFDDVVEEAGFITPV 257

Query: 246 PGGVGPMTVAMLLSNTLDSAKRAY 269
           PGGVGPMT+ MLL+NTL +AKR +
Sbjct: 258 PGGVGPMTITMLLANTLKAAKRIW 281

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Listeria monocytogenes serotype 4a (strain HCC23) (taxid: 552536)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|Q71ZW2|FOLD_LISMF Bifunctional protein FolD OS=Listeria monocytogenes serotype 4b (strain F2365) GN=folD PE=3 SV=1

 Score =  272 bits (696), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 135/264 (51%), Positives = 189/264 (71%), Gaps = 11/264 (4%)

Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           GK PGLAV+LVG+ + S+TYVRNK K  EE G+KS++ E  +  TE+++L+ +   N+D 
Sbjct: 29  GKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDK 88

Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
           +I+GILVQLPLP+H+ E K++D +S +KDVDGFHP+N+GNL + G++  F+PCTP G IE
Sbjct: 89  TIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIE 146

Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA 185
           L+  +G +I GK AVVIGRSNIVG P + LL   +ATV+I H+ TK+  Q+  EADI++ 
Sbjct: 147 LIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLIENATVTIAHSRTKDLPQVAKEADILVV 206

Query: 186 AAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPV 245
           A G+A  V+  ++KPGAVV+DVG            +   +L GDV +++ +  A  ITPV
Sbjct: 207 ATGLAKFVKKDYIKPGAVVIDVGM---------DRDENNKLCGDVDFDDVVEEAGFITPV 257

Query: 246 PGGVGPMTVAMLLSNTLDSAKRAY 269
           PGGVGPMT+ MLL+NTL +AKR +
Sbjct: 258 PGGVGPMTITMLLANTLKAAKRIW 281

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|A0LE04|FOLD_MAGSM Bifunctional protein FolD OS=Magnetococcus sp. (strain MC-1) GN=folD PE=3 SV=1

 Score =  263 bits (672), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 141/261 (54%), Positives = 176/261 (67%), Gaps = 11/261 (4%)

Query: 9   PGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 68
           PGLAV+LVG    SQ YVRNK +ACE  GI S   E A   ++ E+L  +   NQD +++
Sbjct: 33  PGLAVVLVGADPASQVYVRNKKRACETAGIASFSHELAATTSQAELLALIEQLNQDDAVH 92

Query: 69  GILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLI 128
           GILVQLPLP+H+DE K+L+A+S  KD DGFHP N+G L     +P F PCTP G +E+L 
Sbjct: 93  GILVQLPLPKHIDEQKVLEAISPSKDADGFHPYNVGRLVT--GDPTFQPCTPWGVMEMLK 150

Query: 129 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAG 188
            SGV+  GK+AVVIGRSNIVG P +L+L   HATV+I H+ T +  +    ADIV+AA G
Sbjct: 151 VSGVDPKGKHAVVIGRSNIVGKPVALMLLAAHATVTICHSRTPDLAETVKRADIVVAAVG 210

Query: 189 VANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG 248
            AN+V GSW+K GAVV+DVG            E G +L GDV Y      AS ITPVPGG
Sbjct: 211 RANMVPGSWIKKGAVVIDVGIN--------RGEDG-KLCGDVDYASCFEHASAITPVPGG 261

Query: 249 VGPMTVAMLLSNTLDSAKRAY 269
           VGPMT+AMLL NT++ AKRA+
Sbjct: 262 VGPMTIAMLLKNTVEGAKRAH 282

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Magnetococcus sp. (strain MC-1) (taxid: 156889)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|P09440|C1TM_YEAST C-1-tetrahydrofolate synthase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MIS1 PE=1 SV=1

 Score =  262 bits (669), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 133/261 (50%), Positives = 182/261 (69%), Gaps = 3/261 (1%)

Query: 9   PGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 68
           P L +I VG R DS TYVR K+KA ++  +  I+ +     TE E+L  +S+ N D SI+
Sbjct: 67  PTLKIIQVGARPDSSTYVRMKLKASKDSNVDCIIEKLPAEITEVELLKKISDINDDDSIH 126

Query: 69  GILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLI 128
           G+L+QLPLP+HLDE  I +AV  +KDVDGFH  N G LA +G +P FIPCTP GC++LL 
Sbjct: 127 GLLIQLPLPRHLDETTITNAVDFKKDVDGFHRYNAGELAKKGGKPYFIPCTPYGCMKLLE 186

Query: 129 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAG 188
            + V++ GKNAVV+GRS+IVG P + LL+  +ATV++ H+ T+N  ++ S+ADIVIAA G
Sbjct: 187 EAHVKLDGKNAVVLGRSSIVGNPIASLLKNANATVTVCHSHTRNIAEVVSQADIVIAACG 246

Query: 189 VANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG 248
           +   V+  W+K GAVV+DVG   ++   D S + G +L+GDV ++      S ITPVPGG
Sbjct: 247 IPQYVKSDWIKEGAVVIDVG---INYVPDISKKSGQKLVGDVDFDSVKEKTSYITPVPGG 303

Query: 249 VGPMTVAMLLSNTLDSAKRAY 269
           VGPMTVAML+SN L +AKR +
Sbjct: 304 VGPMTVAMLVSNVLLAAKRQF 324

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 3

>sp|A0AIG1|FOLD_LISW6 Bifunctional protein FolD OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=folD PE=3 SV=1

 Score =  260 bits (664), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 133/266 (50%), Positives = 187/266 (70%), Gaps = 11/266 (4%)

Query: 4   SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQ 63
            I K PGLAV+LVG+ + S+TYVRNK K  EE G+KS++ E  +  +E+++L  +   N 
Sbjct: 27  KIDKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPETVSEEKLLEVVEELNT 86

Query: 64  DSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGC 123
           D +I+GILVQLPLP+H+ E K++D +S +KDVDGFHP+N+GNL + G++  F+PCTP G 
Sbjct: 87  DDTIHGILVQLPLPKHISEEKVIDTISYDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGI 144

Query: 124 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIV 183
           IEL+  +G +I GK AVVIGRSNIVG P + LL   +ATV+I H+ TKN  ++  EADI+
Sbjct: 145 IELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKNLPEVAKEADIL 204

Query: 184 IAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT 243
           + A G+A  V+  ++KPGA+V+DVG            +   +L GDV +++ +  A  IT
Sbjct: 205 VVATGLAKFVKKEYIKPGAIVIDVGM---------DRDENNKLCGDVDFDDVIEEAGFIT 255

Query: 244 PVPGGVGPMTVAMLLSNTLDSAKRAY 269
           PVPGGVGPMT+ MLL+NTL +AKR +
Sbjct: 256 PVPGGVGPMTITMLLANTLKAAKRIW 281

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) (taxid: 386043)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|A1BF67|FOLD_CHLPD Bifunctional protein FolD OS=Chlorobium phaeobacteroides (strain DSM 266) GN=folD PE=3 SV=2

 Score =  258 bits (658), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 136/271 (50%), Positives = 180/271 (66%), Gaps = 7/271 (2%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
            + SIGKVPGL VI+VG    SQ YVRNK K+C E+G+ S V E      ++ +L A+  
Sbjct: 24  FQASIGKVPGLTVIIVGHDPASQVYVRNKAKSCLEIGMHSTVIEMPHDTPQETLLQAIRE 83

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            NQD +++GILVQ PLP+ +DE  +  A+   KDVDGFHP N+G L M   +  F+ CTP
Sbjct: 84  LNQDPAVHGILVQQPLPKQIDEFAVTLAIDPSKDVDGFHPENLGRLVMGHLDKCFVSCTP 143

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQRHHA---TVSIVHALTKNPEQI 176
            G +ELL R  +E  GK+ VV+GRSNIVG P  +L++Q+  A   TV++ H+ T++    
Sbjct: 144 YGILELLDRYNIETKGKHCVVVGRSNIVGKPMANLMMQKLDATNCTVTVCHSATRDIPSF 203

Query: 177 TSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAM 236
           T +ADI+IAA G A  +    +KPGAVV+DVG   ++   DPS + GYRL+GDV Y+   
Sbjct: 204 TKQADILIAALGKARFITADMVKPGAVVIDVGINRIE---DPSTKSGYRLVGDVDYDGVA 260

Query: 237 RLASVITPVPGGVGPMTVAMLLSNTLDSAKR 267
            LAS ITPVPGGVGPMT+AMLL NTL S +R
Sbjct: 261 ALASAITPVPGGVGPMTIAMLLKNTLQSFRR 291

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Chlorobium phaeobacteroides (strain DSM 266) (taxid: 290317)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|B4SGR4|FOLD_PELPB Bifunctional protein FolD OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=folD PE=3 SV=1

 Score =  257 bits (657), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 137/266 (51%), Positives = 178/266 (66%), Gaps = 7/266 (2%)

Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           GKVPGL VI+VG+   SQ YVRNK K C+E+G+ S V E AD  TE  ++  +   N D 
Sbjct: 29  GKVPGLTVIIVGQDPASQVYVRNKAKTCKEIGMISTVIEMADDTTEKHLIETIHKLNNDP 88

Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
           +++GILVQ PLP+ +DE  +  A+   KDVDGFHP N+G L M   +  F+ CTP G +E
Sbjct: 89  TVHGILVQQPLPKQIDEFAVTLAIDPSKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILE 148

Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQRHHA---TVSIVHALTKNPEQITSEAD 181
           LL R  +E  GK+ VV+GRSNIVG P  +L+LQ+  A   TV+I H+ TKN    T +AD
Sbjct: 149 LLGRYNIETRGKHCVVVGRSNIVGKPMANLMLQKLDATNCTVTICHSATKNIPFYTLQAD 208

Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASV 241
           I+IAA G A  +    +KPGAVV+DVG   ++   DPS + GYRL+GDV +E    +AS 
Sbjct: 209 ILIAAIGKAGFITADMVKPGAVVIDVGINRIE---DPSTKSGYRLVGDVDFEAVSTVASA 265

Query: 242 ITPVPGGVGPMTVAMLLSNTLDSAKR 267
           +TPVPGGVGPMT+AMLL NTL S +R
Sbjct: 266 MTPVPGGVGPMTIAMLLKNTLQSFQR 291

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) (taxid: 324925)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
224069028	269	predicted protein [Populus trichocarpa]	0.988	1.0	0.805	1e-126
255557907	358	methylenetetrahydrofolate dehydrogenase,	0.985	0.748	0.785	1e-125
147770970	362	hypothetical protein VITISV_024214 [Viti	1.0	0.751	0.782	1e-124
449525075	357	PREDICTED: bifunctional protein FolD-lik	0.988	0.753	0.790	1e-124
449459574	357	PREDICTED: bifunctional protein FolD-lik	0.988	0.753	0.786	1e-124
225439037	355	PREDICTED: bifunctional protein FolD-lik	0.988	0.757	0.794	1e-124
296085803	358	unnamed protein product [Vitis vinifera]	0.988	0.751	0.794	1e-124
356505416	361	PREDICTED: bifunctional protein FolD-lik	0.988	0.745	0.783	1e-122
297823751	350	methylenetetrahydrofolate dehydrogenase	0.977	0.76	0.769	1e-120
357438639	309	Bifunctional protein folD [Medicago trun	0.988	0.870	0.775	1e-119

>gi|224069028|ref|XP_002326257.1| predicted protein [Populus trichocarpa] gi|222833450|gb|EEE71927.1| predicted protein [Populus trichocarpa]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/272 (80%), Positives = 245/272 (90%), Gaps = 3/272 (1%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           MK S+GK+PGLAVILVG+RRDS TYVRNK+KACE+ GIKS+VT+F   C +D+V++ALS 
Sbjct: 1   MKDSVGKIPGLAVILVGDRRDSLTYVRNKVKACEDAGIKSLVTQFPQDCKQDDVIHALSA 60

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           +N+D SI+GILVQLPLPQHLDEGKIL+ + LEKDVDGFHPLN+GNLAMRGREPLFIPCTP
Sbjct: 61  FNEDPSIHGILVQLPLPQHLDEGKILNVLKLEKDVDGFHPLNMGNLAMRGREPLFIPCTP 120

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGCIELLIRS VEIMGKNAVVIGRSNIVGLP SLLLQRHHATV+IVHA TKNPEQI  EA
Sbjct: 121 KGCIELLIRSSVEIMGKNAVVIGRSNIVGLPISLLLQRHHATVTIVHAFTKNPEQIAREA 180

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           DIV+ A GV NLVRG+WLKPGAVV+DVGT PV+   DPSCE GYRL+GDVCYEEA ++AS
Sbjct: 181 DIVVTATGVPNLVRGNWLKPGAVVIDVGTFPVE---DPSCENGYRLIGDVCYEEASKVAS 237

Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT 272
            ITPVPGGVGPMT+AMLLSNTLDSAKRAY FT
Sbjct: 238 AITPVPGGVGPMTIAMLLSNTLDSAKRAYDFT 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557907|ref|XP_002519982.1| methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis] gi|223540746|gb|EEF42306.1| methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/271 (78%), Positives = 246/271 (90%), Gaps = 3/271 (1%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           MK+SIGKVPGLAVILVG+RRDSQTYVRNKI AC+E GIKS++TE  + CTED V++A+++
Sbjct: 90  MKESIGKVPGLAVILVGQRRDSQTYVRNKISACDEAGIKSLITELPEDCTEDAVMDAVTS 149

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           +N+DSSI+G+LVQLPLPQHLDE KIL+ ++LEKDVDGFHPLN+GNLAMRGREPLFIPCTP
Sbjct: 150 FNEDSSIHGVLVQLPLPQHLDENKILNVLNLEKDVDGFHPLNMGNLAMRGREPLFIPCTP 209

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGC+ELLIRS VEI GKNAVVIGRSNIVGLPTSLLLQRHHATV++VHA T +PE+IT +A
Sbjct: 210 KGCVELLIRSDVEIKGKNAVVIGRSNIVGLPTSLLLQRHHATVTVVHAFTNDPEEITRKA 269

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           DIV+ AAGV NLVR +WLKPGAVV+DVGTCPV+   DPS E GYRL GDVCYEEA+++AS
Sbjct: 270 DIVVTAAGVPNLVRNNWLKPGAVVIDVGTCPVE---DPSSECGYRLTGDVCYEEAVKVAS 326

Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAYGF 271
            ITPVPGGVGPMT+AMLLSNTLDSAKR Y F
Sbjct: 327 AITPVPGGVGPMTIAMLLSNTLDSAKRTYNF 357

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770970|emb|CAN65246.1| hypothetical protein VITISV_024214 [Vitis vinifera]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/276 (78%), Positives = 248/276 (89%), Gaps = 4/276 (1%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           MK+SIGKVPGLAVILVG+RRDSQTYVRNKIKACEE GIKS++ E  + CTEDE+L+ALS+
Sbjct: 87  MKESIGKVPGLAVILVGQRRDSQTYVRNKIKACEEAGIKSLMAELPEDCTEDEILSALSS 146

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           +N++ SI+GILVQLPLP+HLDE KIL+ VSLEKDVDGF+PLN+GNLAMRGREPLFIPCT 
Sbjct: 147 FNENPSIHGILVQLPLPKHLDEEKILNMVSLEKDVDGFNPLNMGNLAMRGREPLFIPCTA 206

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGCIELL+RSGVEIMGK AVVIGRSNI GLPTSLLLQRHHATVSI+HAL+KNP+QIT +A
Sbjct: 207 KGCIELLLRSGVEIMGKKAVVIGRSNIAGLPTSLLLQRHHATVSILHALSKNPDQITRQA 266

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSV----DPSCEYGYRLMGDVCYEEAM 236
           DIV+ A GV NLVRG WLKPGAVV+DVGT PV++ +    DPS E+GY L+GDVCYEEA+
Sbjct: 267 DIVVTAVGVPNLVRGHWLKPGAVVIDVGTYPVEIKLMDQQDPSSEFGYHLVGDVCYEEAL 326

Query: 237 RLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT 272
            +AS +TPVPGGVGPMT+AMLLSNTLDSAKRAY  T
Sbjct: 327 GVASAVTPVPGGVGPMTIAMLLSNTLDSAKRAYDIT 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525075|ref|XP_004169545.1| PREDICTED: bifunctional protein FolD-like [Cucumis sativus]

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/272 (79%), Positives = 241/272 (88%), Gaps = 3/272 (1%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           MK + G VPGLAVI+VG+RRDSQ YVRNKI ACEE GI S ++   + CTED+VLNALS 
Sbjct: 89  MKNATGNVPGLAVIMVGQRRDSQIYVRNKIAACEEAGIMSEISNLPEDCTEDQVLNALSR 148

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           +++D SI+GILVQLPLPQHLDE KIL++V LEKDVDGFHPLN+GNLAMRGREPLF+PCTP
Sbjct: 149 FHEDPSIHGILVQLPLPQHLDESKILNSVHLEKDVDGFHPLNMGNLAMRGREPLFLPCTP 208

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGCIELLIRSGVEI GK AVVIGRSNIVGLPTSLLLQRHHATVSIVHA T+NPEQI  EA
Sbjct: 209 KGCIELLIRSGVEITGKRAVVIGRSNIVGLPTSLLLQRHHATVSIVHAFTRNPEQIAREA 268

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           DIV+AAAGV NLVRGSWLKPGA+V+DVG  PV+   DPSCE+GYRL+GDVCYEEA R+AS
Sbjct: 269 DIVVAAAGVPNLVRGSWLKPGAIVIDVGINPVE---DPSCEFGYRLIGDVCYEEASRVAS 325

Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT 272
            ITPVPGGVGP+TVAMLL NTL+SAKRA+ FT
Sbjct: 326 AITPVPGGVGPVTVAMLLLNTLESAKRAHNFT 357

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459574|ref|XP_004147521.1| PREDICTED: bifunctional protein FolD-like [Cucumis sativus]

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/272 (78%), Positives = 241/272 (88%), Gaps = 3/272 (1%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           MK + G VPGLAVI+VG+RRDSQ YVRNKI ACEE GI S ++   + CTED+VLNALS 
Sbjct: 89  MKNATGNVPGLAVIMVGQRRDSQIYVRNKIAACEEAGIMSEISNLPEDCTEDQVLNALSR 148

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           +++D SI+GILVQLPLPQHLDE KIL++V LEKDVDGFHPLN+GNLAMRGREPLF+PCTP
Sbjct: 149 FHEDPSIHGILVQLPLPQHLDESKILNSVHLEKDVDGFHPLNMGNLAMRGREPLFLPCTP 208

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGC+ELLIRSGVEI GK AVVIGRSNIVGLPTSLLLQRHHATVSIVHA T+NPEQI  EA
Sbjct: 209 KGCVELLIRSGVEITGKRAVVIGRSNIVGLPTSLLLQRHHATVSIVHAFTRNPEQIAREA 268

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           DIV+AAAGV NLVRGSWLKPGA+V+DVG  PV+   DPSCE+GYRL+GDVCYEEA R+AS
Sbjct: 269 DIVVAAAGVPNLVRGSWLKPGAIVIDVGINPVE---DPSCEFGYRLIGDVCYEEASRVAS 325

Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT 272
            ITPVPGGVGP+TVAMLL NTL+SAKRA+ FT
Sbjct: 326 AITPVPGGVGPVTVAMLLLNTLESAKRAHNFT 357

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439037|ref|XP_002264477.1| PREDICTED: bifunctional protein FolD-like [Vitis vinifera]

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/272 (79%), Positives = 246/272 (90%), Gaps = 3/272 (1%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           MK+SIGKVPGLAVILVG+RRDSQTYVRNKIKACEE GIKS++ E  + CTEDE+L+ALS+
Sbjct: 87  MKESIGKVPGLAVILVGQRRDSQTYVRNKIKACEEAGIKSLMAELPEDCTEDEILSALSS 146

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           +N++ SI+GILVQLPLP+HLDE KIL+ VSLEKDVDGF+PLN+GNLAMRGREPLFIPCT 
Sbjct: 147 FNENPSIHGILVQLPLPKHLDEEKILNMVSLEKDVDGFNPLNMGNLAMRGREPLFIPCTA 206

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGCIELL+RSGVEIMGK AVVIGRSNI GLPTSLLLQRHHATVSI+HAL+KNP+QIT +A
Sbjct: 207 KGCIELLLRSGVEIMGKKAVVIGRSNIAGLPTSLLLQRHHATVSILHALSKNPDQITRQA 266

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           DIV+ A GV NLVRG WLKPGAVV+DVGT PV+   DPS E+GY L+GDVCYEEA+ +AS
Sbjct: 267 DIVVTAVGVPNLVRGHWLKPGAVVIDVGTYPVE---DPSSEFGYHLVGDVCYEEALGVAS 323

Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT 272
            +TPVPGGVGPMT+AMLLSNTLDSAKRAY  T
Sbjct: 324 AVTPVPGGVGPMTIAMLLSNTLDSAKRAYDIT 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085803|emb|CBI31127.3| unnamed protein product [Vitis vinifera]

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/272 (79%), Positives = 246/272 (90%), Gaps = 3/272 (1%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           MK+SIGKVPGLAVILVG+RRDSQTYVRNKIKACEE GIKS++ E  + CTEDE+L+ALS+
Sbjct: 90  MKESIGKVPGLAVILVGQRRDSQTYVRNKIKACEEAGIKSLMAELPEDCTEDEILSALSS 149

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           +N++ SI+GILVQLPLP+HLDE KIL+ VSLEKDVDGF+PLN+GNLAMRGREPLFIPCT 
Sbjct: 150 FNENPSIHGILVQLPLPKHLDEEKILNMVSLEKDVDGFNPLNMGNLAMRGREPLFIPCTA 209

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGCIELL+RSGVEIMGK AVVIGRSNI GLPTSLLLQRHHATVSI+HAL+KNP+QIT +A
Sbjct: 210 KGCIELLLRSGVEIMGKKAVVIGRSNIAGLPTSLLLQRHHATVSILHALSKNPDQITRQA 269

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           DIV+ A GV NLVRG WLKPGAVV+DVGT PV+   DPS E+GY L+GDVCYEEA+ +AS
Sbjct: 270 DIVVTAVGVPNLVRGHWLKPGAVVIDVGTYPVE---DPSSEFGYHLVGDVCYEEALGVAS 326

Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT 272
            +TPVPGGVGPMT+AMLLSNTLDSAKRAY  T
Sbjct: 327 AVTPVPGGVGPMTIAMLLSNTLDSAKRAYDIT 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505416|ref|XP_003521487.1| PREDICTED: bifunctional protein FolD-like [Glycine max]

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 213/272 (78%), Positives = 239/272 (87%), Gaps = 3/272 (1%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           MKK +GKVPGLAVILVG+RRDSQTYVRNKI ACEEVGIKS+VTE    C   +V NA+  
Sbjct: 93  MKKGLGKVPGLAVILVGQRRDSQTYVRNKIMACEEVGIKSLVTELPTDCAVTDVQNAIMR 152

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           +N+D SI+GILVQLPLPQHLDE K+LDAV LEKDVDGFHPLN+GNLA+RGREPLF PCTP
Sbjct: 153 FNKDPSIHGILVQLPLPQHLDEEKVLDAVCLEKDVDGFHPLNMGNLAIRGREPLFTPCTP 212

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGCIELLIRSGVEIMGK AVVIG SNIVGLP SLLLQRHHATV+++HA T+NPEQITSEA
Sbjct: 213 KGCIELLIRSGVEIMGKKAVVIGTSNIVGLPASLLLQRHHATVTVIHAFTQNPEQITSEA 272

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           DIV++AAGV NLVRG+W+KPGA V+DVGT PV+   DP CE GYRL GDVCYEEA+++AS
Sbjct: 273 DIVVSAAGVPNLVRGNWIKPGAAVIDVGTTPVE---DPGCEDGYRLAGDVCYEEAVKVAS 329

Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT 272
           +ITPVPGGVGPMTVAMLL NTLDSAKR   F+
Sbjct: 330 IITPVPGGVGPMTVAMLLCNTLDSAKRMLNFS 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823751|ref|XP_002879758.1| methylenetetrahydrofolate dehydrogenase [Arabidopsis lyrata subsp. lyrata] gi|297325597|gb|EFH56017.1| methylenetetrahydrofolate dehydrogenase [Arabidopsis lyrata subsp. lyrata]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/269 (76%), Positives = 239/269 (88%), Gaps = 3/269 (1%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           MKK++GKVPGLAV+LVG++RDSQTYVRNKIKACEE GIKSI+ E  + CTE ++L+ L  
Sbjct: 84  MKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSILAELPEDCTEGQILSILKK 143

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           +N+D+SI+GILVQLPLPQHLDE KIL+ V LEKDVDGFHPLN+GNLAMRGREPLF+ CTP
Sbjct: 144 FNEDTSIHGILVQLPLPQHLDESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTP 203

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGC+ELLIR+GVEI GKNAVVIGRSNIVGLP SLLLQRH ATVS VHA TK+PEQIT +A
Sbjct: 204 KGCVELLIRAGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRKA 263

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           DIVIAAAG+ +LVRGSWLKPGAVV+DVGT PV+   D SCE+GYRL+GDVCYEEA+ +AS
Sbjct: 264 DIVIAAAGIPSLVRGSWLKPGAVVIDVGTSPVE---DSSCEFGYRLVGDVCYEEALGVAS 320

Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAY 269
            ITPVPGGVGPMT+ MLL NTLD+AKR +
Sbjct: 321 AITPVPGGVGPMTITMLLCNTLDAAKRIF 349

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438639|ref|XP_003589595.1| Bifunctional protein folD [Medicago truncatula] gi|355478643|gb|AES59846.1| Bifunctional protein folD [Medicago truncatula]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/272 (77%), Positives = 239/272 (87%), Gaps = 3/272 (1%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           MKK +GKVPGLAVILVG+RRDS TYVRNKI ACEEVG+KS+VTE    C + +V NA+  
Sbjct: 41  MKKGLGKVPGLAVILVGQRRDSLTYVRNKIIACEEVGMKSVVTELPTDCADADVQNAIMR 100

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           +N+D SI+GILVQLPLPQHLDE KILDAV LEKDVDGFHP+N+GNLA+RGREPLFIPCT 
Sbjct: 101 FNKDPSIHGILVQLPLPQHLDEEKILDAVCLEKDVDGFHPVNMGNLALRGREPLFIPCTT 160

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           K CIELLIRSGVEIMGK AVVIGRSNIVGLPTSLLLQRHHATV++VHA T+NPEQITSEA
Sbjct: 161 KACIELLIRSGVEIMGKKAVVIGRSNIVGLPTSLLLQRHHATVTVVHAFTENPEQITSEA 220

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           DIV++AAGV NLV G+W+K GA V+DVGT PV+   DPSCE GYRL+GDVC+EE +++AS
Sbjct: 221 DIVVSAAGVPNLVCGNWIKSGATVIDVGTIPVE---DPSCEDGYRLVGDVCFEEVIKVAS 277

Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT 272
           VITPVPGGVGPMTV MLL NTLDSAKR + FT
Sbjct: 278 VITPVPGGVGPMTVTMLLVNTLDSAKRLFNFT 309

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
TAIR|locus:2064143	352	AT2G38660 [Arabidopsis thalian	0.977	0.755	0.758	6.1e-110
TAIR|locus:2127113	360	EMB3127 "EMBRYO DEFECTIVE 3127	0.985	0.744	0.701	1.3e-100
TAIR|locus:2082254	299	AT3G12290 [Arabidopsis thalian	0.963	0.876	0.626	3.3e-86
TAIR|locus:2127083	310	AT4G00600 [Arabidopsis thalian	0.933	0.819	0.609	1.6e-79
DICTYBASE|DDB_G0283121	292	DDB_G0283121 "methenyl tetrahy	0.948	0.883	0.546	2.6e-70
ASPGD|ASPL0000036964	1031	AN2998 [Emericella nidulans (t	0.944	0.249	0.540	1.3e-66
FB|FBgn0020385	968	pug "pugilist" [Drosophila mel	0.966	0.271	0.507	5.7e-66
SGD|S000000288	975	MIS1 "Mitochondrial C1-tetrahy	0.948	0.264	0.509	2e-64
CGD|CAL0000024	1025	MIS12 [Candida albicans (taxid	0.933	0.247	0.474	1.9e-62
UNIPROTKB|Q5AAF6	1025	MIS1 "Putative uncharacterized	0.933	0.247	0.474	1.9e-62

TAIR|locus:2064143 AT2G38660 [Arabidopsis thaliana (taxid:3702)]

 Score = 1086 (387.4 bits), Expect = 6.1e-110, P = 6.1e-110
 Identities = 204/269 (75%), Positives = 238/269 (88%)

Query:     1 MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
             MKK++GKVPGLAV+LVGE+RDSQTYVRNKIKACEE GIKS++ E  + CTE ++++ L  
Sbjct:    86 MKKAVGKVPGLAVVLVGEQRDSQTYVRNKIKACEETGIKSVLAELPEDCTEGQIISVLRK 145

Query:    61 YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
             +N+D+SI+GILVQLPLPQHL+E KIL+ V LEKDVDGFHPLN+GNLAMRGREPLF+ CTP
Sbjct:   146 FNEDTSIHGILVQLPLPQHLNESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTP 205

Query:   121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
             KGC+ELLIR+GVEI GKNAVVIGRSNIVGLP SLLLQRH ATVS VHA TK+PE IT +A
Sbjct:   206 KGCVELLIRTGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEHITRKA 265

Query:   181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
             DIVIAAAG+ NLVRGSWLKPGAVV+DVGT PV+   D SCE+GYRL+GDVCYEEA+ +AS
Sbjct:   266 DIVIAAAGIPNLVRGSWLKPGAVVIDVGTTPVE---DSSCEFGYRLVGDVCYEEALGVAS 322

Query:   241 VITPVPGGVGPMTVAMLLSNTLDSAKRAY 269
              ITPVPGGVGPMT+ MLL NTL++AKR +
Sbjct:   323 AITPVPGGVGPMTITMLLCNTLEAAKRIF 351

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2127113 EMB3127 "EMBRYO DEFECTIVE 3127" [Arabidopsis thaliana (taxid:3702)]

 Score = 998 (356.4 bits), Expect = 1.3e-100, P = 1.3e-100
 Identities = 190/271 (70%), Positives = 226/271 (83%)

Query:     1 MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
             MK+SIG +PGLAVILVG+R+DS TYVRNK KAC+ VGIKS     A+  +E+EVL ++S 
Sbjct:    92 MKESIGVIPGLAVILVGDRKDSATYVRNKKKACDSVGIKSFEVRLAEDSSEEEVLKSVSG 151

Query:    61 YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
             +N D S++GILVQLPLP H+DE  IL+AVS+EKDVDGFHPLNIG LAMRGREPLF+PCTP
Sbjct:   152 FNDDPSVHGILVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTP 211

Query:   121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
             KGCIELL R  +EI GK AVVIGRSNIVG+P +LLLQR  ATVSI+H+ TKNPE+IT EA
Sbjct:   212 KGCIELLHRYNIEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIIHSRTKNPEEITREA 271

Query:   181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
             DI+I+A G  N+VRGSW+KPGAV++DVG  PV+   DPS   GYRL+GD+CYEEA ++AS
Sbjct:   272 DIIISAVGQPNMVRGSWIKPGAVLIDVGINPVE---DPSAARGYRLVGDICYEEASKVAS 328

Query:   241 VITPVPGGVGPMTVAMLLSNTLDSAKRAYGF 271
              ITPVPGGVGPMT+AMLLSNTL SAKR + F
Sbjct:   329 AITPVPGGVGPMTIAMLLSNTLTSAKRIHNF 359

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2082254 AT3G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 166/265 (62%), Positives = 209/265 (78%)

Query:     6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
             GKVPGLAV++VG R+DSQTYV  K KAC EVGIKS      +  +E ++++ +   N + 
Sbjct:    37 GKVPGLAVVIVGSRKDSQTYVNTKRKACAEVGIKSFDVGLPEEVSEADLISKVHELNSNP 96

Query:    66 SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
              ++GILVQLPLP+H++E  IL A+S++KDVDGFHPLNIG LAM+GREPLF+PCTPKGC+E
Sbjct:    97 DVHGILVQLPLPKHINEEHILGAISIDKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLE 156

Query:   126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA 185
             LL RSGV+I G+ AVV+GRSNIVGLP SLLL +  ATV+ VH+ TK+PE I  EADIVIA
Sbjct:   157 LLARSGVKIKGQRAVVVGRSNIVGLPVSLLLLKADATVTTVHSHTKDPEAIIREADIVIA 216

Query:   186 AAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPV 245
             A G A++++G+W+KPGA V+DVGT  V    DPS + GYRL+GDV + EA ++A  ITPV
Sbjct:   217 ACGQAHMIKGNWIKPGAAVIDVGTNAVS---DPSKKSGYRLVGDVDFAEASKVAGFITPV 273

Query:   246 PGGVGPMTVAMLLSNTLDSAKRAYG 270
             PGGVGPMTVAMLL NT+D AKR +G
Sbjct:   274 PGGVGPMTVAMLLRNTVDGAKRVFG 298

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2127083 AT4G00600 [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 159/261 (60%), Positives = 201/261 (77%)

Query:    12 AVILVGERRDSQTYVRNKIKACEEVGIK-SIVTEFADGCTEDEVLNALSNYNQDSSINGI 70
             A+++ G+    +  +R+ IK  E   +K SI    A+  +E+EVL  +S +N D S++G+
Sbjct:    55 AIVIDGKAEAKK--IRDDIKI-EVSRMKESIGVVPAEDSSEEEVLKYVSGFNDDPSVHGV 111

Query:    71 LVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRS 130
             LVQLPLP H+DE  IL+AVS+EKDVDGFHPLNIG LAMRGREPLF+PCTPKGCIELL R 
Sbjct:   112 LVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRY 171

Query:   131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVA 190
              +E  GK AVVIGRSNIVG+P +LLLQ+  ATVSI+H+ T NPE++T +ADI+I+A G  
Sbjct:   172 NIEFKGKRAVVIGRSNIVGMPAALLLQKEDATVSIIHSRTMNPEELTRQADILISAVGKP 231

Query:   191 NLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVG 250
             N+VRGSW+KPGAV++DVG  PV+   DPS   G RL+GD+CY EA ++AS ITPVPG VG
Sbjct:   232 NMVRGSWIKPGAVLIDVGIKPVE---DPSAAGGERLVGDICYVEASKIASAITPVPGDVG 288

Query:   251 PMTVAMLLSNTLDSAKRAYGF 271
             PMT+AMLLSNTL SAKR + F
Sbjct:   289 PMTIAMLLSNTLTSAKRIHNF 309

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0055114 "oxidation-reduction process" evidence=IEA

DICTYBASE|DDB_G0283121 DDB_G0283121 "methenyl tetrahydrofolate cyclohydrolase / NADP-dependent methylene H4F dehydrogenase" [Dictyostelium discoideum (taxid:44689)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 146/267 (54%), Positives = 190/267 (71%)

Query:     1 MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
             MK+   + P L VILVG+R+DSQTYVRNK K   ++GI SI     +  T+ E+++ + +
Sbjct:    31 MKEKGLRAPCLVVILVGDRKDSQTYVRNKKKTASDLGINSIDILLPEQTTQQELIDLVQS 90

Query:    61 YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
             Y++   ++GILVQLPLP H++E  IL  +   KDVDGFHP+NIG LAMRGR+  F PCTP
Sbjct:    91 YSKKDDVDGILVQLPLPSHINEEIILTQIDESKDVDGFHPVNIGKLAMRGRKADFEPCTP 150

Query:   121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
             KGCIE+L RSG+EI GKNAVV+GRSNIVGLP S+LL    ATV+I H+ T N ++   EA
Sbjct:   151 KGCIEMLDRSGIEIAGKNAVVLGRSNIVGLPVSMLLLSRDATVTICHSKTPNLKEKCREA 210

Query:   181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
             DI++ A G A LV+  W+K GAVV+DVG     ++ D +     +L GDV Y E   +AS
Sbjct:   211 DILVVAIGKAKLVKKDWVKTGAVVIDVG-----MNTDEN----NKLCGDVDYNEVKEVAS 261

Query:   241 VITPVPGGVGPMTVAMLLSNTLDSAKR 267
              ITPVPGGVGPMT+AML+ NTL+SAK+
Sbjct:   262 YITPVPGGVGPMTIAMLMKNTLESAKK 288

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA;IBA

GO:0003824 "catalytic activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=IBA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000036964 AN2998 [Emericella nidulans (taxid:162425)]

 Score = 682 (245.1 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 141/261 (54%), Positives = 177/261 (67%)

Query:     9 PGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 68
             P L +  VG+R DS TYVR K+KA EE  I   +  F +  T+ E+L  +S  N D S++
Sbjct:   127 PSLVIFQVGDRSDSSTYVRMKLKAAEEANILCKIVNFPESITQPEILQEISQANNDPSVH 186

Query:    69 GILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLI 128
             GILVQLPLPQHL E  +  AV+ EKDVDGF  +NIG LA RG  PLF+PCTPK  + LL 
Sbjct:   187 GILVQLPLPQHLSEHAVTSAVADEKDVDGFGAINIGELAKRGGRPLFVPCTPKAVMVLLK 246

Query:   129 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAG 188
              SGV+  GK AVV+GRS+IVG P S LL+   ATV++ H+ T +      +ADIV+AA G
Sbjct:   247 ASGVDPAGKEAVVLGRSDIVGSPVSYLLKNADATVTVCHSKTPDIASAVKKADIVVAAIG 306

Query:   189 VANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG 248
                 V+G W+KPGAVV+DVG   ++   D + + G RL+GDV YE A ++AS ITPVPGG
Sbjct:   307 KTEFVKGDWIKPGAVVIDVG---INYKPDSTKKSGQRLVGDVEYESASQVASKITPVPGG 363

Query:   249 VGPMTVAMLLSNTLDSAKRAY 269
             VGPMTVAMLL N + SAK AY
Sbjct:   364 VGPMTVAMLLENVVASAK-AY 383

GO:0006730 "one-carbon metabolic process" evidence=IEA;RCA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IEA;RCA

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=IEA;RCA

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA;RCA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0009113 "purine nucleobase biosynthetic process" evidence=IEA

GO:0046656 "folic acid biosynthetic process" evidence=IEA

GO:0009257 "10-formyltetrahydrofolate biosynthetic process" evidence=IEA

FB|FBgn0020385 pug "pugilist" [Drosophila melanogaster (taxid:7227)]

 Score = 658 (236.7 bits), Expect = 5.7e-66, Sum P(2) = 5.7e-66
 Identities = 137/270 (50%), Positives = 186/270 (68%)

Query:     1 MKKSIGK-VPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALS 59
             M K +   VPGL ++ VG R DS  Y+R KIKA  E+GI +   +     TE E+L+ ++
Sbjct:    61 MSKQLADFVPGLRIVQVGGREDSNVYIRMKIKAATEIGIDAAHVQLPRSITEVELLDKIN 120

Query:    60 NYNQDSSINGILVQLPLP--QHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIP 117
             + N+D  ++GI+VQ+PL     +D  +I DAVS EKDVDG H +N G LA+ G    F+P
Sbjct:   121 DLNEDPRVHGIIVQMPLDCDTPIDSHRITDAVSPEKDVDGLHTVNEGRLAI-GDLGGFLP 179

Query:   118 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQIT 177
             CTP GC+EL+ RSGVEI G  AVV+GRS IVG P + LL+  +ATV++ H+ T+N E+IT
Sbjct:   180 CTPWGCLELIRRSGVEIAGARAVVLGRSKIVGTPAAELLKWANATVTVCHSKTRNLEEIT 239

Query:   178 SEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMR 237
               ADI++   GVA +V+GSW+KPGAVV+D   C ++V  D S   G +L+GDV Y EA++
Sbjct:   240 RSADILVVGIGVAEMVKGSWIKPGAVVID---CGINVKPDASKASGSKLVGDVDYAEALQ 296

Query:   238 LASVITPVPGGVGPMTVAMLLSNTLDSAKR 267
             +A  +TPVPGGVGPMTVAML+ NT+ SA R
Sbjct:   297 VAGHLTPVPGGVGPMTVAMLMKNTVRSAAR 326

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=ISS;IBA

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=ISS;IBA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=ISS;IBA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0006730 "one-carbon metabolic process" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

SGD|S000000288 MIS1 "Mitochondrial C1-tetrahydrofolate synthase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 660 (237.4 bits), Expect = 2.0e-64, P = 2.0e-64
 Identities = 133/261 (50%), Positives = 182/261 (69%)

Query:     9 PGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 68
             P L +I VG R DS TYVR K+KA ++  +  I+ +     TE E+L  +S+ N D SI+
Sbjct:    67 PTLKIIQVGARPDSSTYVRMKLKASKDSNVDCIIEKLPAEITEVELLKKISDINDDDSIH 126

Query:    69 GILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLI 128
             G+L+QLPLP+HLDE  I +AV  +KDVDGFH  N G LA +G +P FIPCTP GC++LL 
Sbjct:   127 GLLIQLPLPRHLDETTITNAVDFKKDVDGFHRYNAGELAKKGGKPYFIPCTPYGCMKLLE 186

Query:   129 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAG 188
              + V++ GKNAVV+GRS+IVG P + LL+  +ATV++ H+ T+N  ++ S+ADIVIAA G
Sbjct:   187 EAHVKLDGKNAVVLGRSSIVGNPIASLLKNANATVTVCHSHTRNIAEVVSQADIVIAACG 246

Query:   189 VANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG 248
             +   V+  W+K GAVV+DVG   ++   D S + G +L+GDV ++      S ITPVPGG
Sbjct:   247 IPQYVKSDWIKEGAVVIDVG---INYVPDISKKSGQKLVGDVDFDSVKEKTSYITPVPGG 303

Query:   249 VGPMTVAMLLSNTLDSAKRAY 269
             VGPMTVAML+SN L +AKR +
Sbjct:   304 VGPMTVAMLVSNVLLAAKRQF 324

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IEA;IDA

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=IEA;IDA

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA;IDA

GO:0000105 "histidine biosynthetic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006164 "purine nucleotide biosynthetic process" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0046656 "folic acid biosynthetic process" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IMP

CGD|CAL0000024 MIS12 [Candida albicans (taxid:5476)]

 Score = 644 (231.8 bits), Expect = 1.9e-62, P = 1.9e-62
 Identities = 122/257 (47%), Positives = 175/257 (68%)

Query:     9 PGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 68
             P L ++ VG R DS  YV++K+KA     IKS + +  +  ++++++  +   N+D  ++
Sbjct:   110 PSLTILQVGSRPDSSAYVKSKLKAAASSNIKSKLIKLDESISQEDLVEVIERLNKDPKVH 169

Query:    69 GILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLI 128
             GILVQLPLP+H+DE  I ++V+ +KDVDGF   N+G L+ RG  P F PCTP G +EL+ 
Sbjct:   170 GILVQLPLPKHIDESVITNSVATDKDVDGFDHYNVGQLSKRGGTPYFKPCTPNGIMELIK 229

Query:   129 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAG 188
              +G+ + GK AVVIGRS+IVG P + +L+    TV++ H  T+N  +I  +ADIV+AA G
Sbjct:   230 TTGIPLRGKTAVVIGRSDIVGTPVATMLRNEDCTVTVCHRYTQNLPEIVRQADIVVAAVG 289

Query:   189 VANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG 248
             +A  V+  W+K GA+V+DVG   ++   DP+ + G RL+GDV YEE  + AS ITPVPGG
Sbjct:   290 IAEYVKADWVKDGAIVIDVG---INYKDDPTAKRGRRLVGDVDYEEVAKKASFITPVPGG 346

Query:   249 VGPMTVAMLLSNTLDSA 265
             VGPMTVAML SN  D+A
Sbjct:   347 VGPMTVAMLCSNVYDAA 363

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5AAF6 MIS1 "Putative uncharacterized protein MIS1" [Candida albicans SC5314 (taxid:237561)]

 Score = 644 (231.8 bits), Expect = 1.9e-62, P = 1.9e-62
 Identities = 122/257 (47%), Positives = 175/257 (68%)

Query:     9 PGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 68
             P L ++ VG R DS  YV++K+KA     IKS + +  +  ++++++  +   N+D  ++
Sbjct:   110 PSLTILQVGSRPDSSAYVKSKLKAAASSNIKSKLIKLDESISQEDLVEVIERLNKDPKVH 169

Query:    69 GILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLI 128
             GILVQLPLP+H+DE  I ++V+ +KDVDGF   N+G L+ RG  P F PCTP G +EL+ 
Sbjct:   170 GILVQLPLPKHIDESVITNSVATDKDVDGFDHYNVGQLSKRGGTPYFKPCTPNGIMELIK 229

Query:   129 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAG 188
              +G+ + GK AVVIGRS+IVG P + +L+    TV++ H  T+N  +I  +ADIV+AA G
Sbjct:   230 TTGIPLRGKTAVVIGRSDIVGTPVATMLRNEDCTVTVCHRYTQNLPEIVRQADIVVAAVG 289

Query:   189 VANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG 248
             +A  V+  W+K GA+V+DVG   ++   DP+ + G RL+GDV YEE  + AS ITPVPGG
Sbjct:   290 IAEYVKADWVKDGAIVIDVG---INYKDDPTAKRGRRLVGDVDYEEVAKKASFITPVPGG 346

Query:   249 VGPMTVAMLLSNTLDSA 265
             VGPMTVAML SN  D+A
Sbjct:   347 VGPMTVAMLCSNVYDAA 363

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B3ECA6	FOLD_CHLL2	3, ., 5, ., 4, ., 9	0.5055	0.9705	0.8918	yes	no
Q71ZW2	FOLD_LISMF	3, ., 5, ., 4, ., 9	0.5113	0.9301	0.8908	yes	no
C3LJV5	FOLD_BACAC	3, ., 5, ., 4, ., 9	0.4887	0.9375	0.8916	yes	no
C0ZC05	FOLD_BREBN	3, ., 5, ., 4, ., 9	0.4943	0.9338	0.8943	yes	no
B2A532	FOLD_NATTJ	3, ., 5, ., 4, ., 9	0.5094	0.9301	0.8908	yes	no
A5VV73	FOLD_BRUO2	3, ., 5, ., 4, ., 9	0.4705	0.9669	0.8795	yes	no
B8DFW8	FOLD_LISMH	3, ., 5, ., 4, ., 9	0.5075	0.9301	0.8908	yes	no
Q8YCL8	FOLD_BRUME	3, ., 5, ., 4, ., 9	0.4705	0.9669	0.8795	yes	no
Q8FVP6	FOLD_BRUSU	3, ., 5, ., 4, ., 9	0.4705	0.9669	0.8795	yes	no
Q1MPZ8	FOLD_LAWIP	3, ., 5, ., 4, ., 9	0.4907	0.9632	0.8821	yes	no
Q578R0	FOLD_BRUAB	3, ., 5, ., 4, ., 9	0.4705	0.9669	0.8795	yes	no
A9MC67	FOLD_BRUC2	3, ., 5, ., 4, ., 9	0.4705	0.9669	0.8795	yes	no
C1L2R6	FOLD_LISMC	3, ., 5, ., 4, ., 9	0.5113	0.9301	0.8908	yes	no
Q8Y7C5	FOLD_LISMO	3, ., 5, ., 4, ., 9	0.5075	0.9301	0.8908	yes	no
Q92BZ4	FOLD_LISIN	3, ., 5, ., 4, ., 9	0.5113	0.9301	0.8908	yes	no
B4S820	FOLD_PROA2	3, ., 5, ., 4, ., 9	0.4872	0.9852	0.9084	yes	no
B9M769	FOLD_GEOSF	3, ., 5, ., 4, ., 9	0.4923	0.9227	0.8964	yes	no
A8ZTQ4	FOLD_DESOH	3, ., 5, ., 4, ., 9	0.4802	0.9889	0.8877	yes	no
A3DEE6	FOLD_CLOTH	3, ., 5, ., 4, ., 9	0.4844	0.9080	0.8666	yes	no
A0AIG1	FOLD_LISW6	3, ., 5, ., 4, ., 9	0.5	0.9375	0.8978	yes	no
A4SER8	FOLD_PROVI	3, ., 5, ., 4, ., 9	0.4854	0.9816	0.9050	yes	no
Q39WH4	FOLD2_GEOMG	3, ., 5, ., 4, ., 9	0.4905	0.9338	0.8912	yes	no
Q3B4E2	FOLD_PELLD	3, ., 5, ., 4, ., 9	0.4888	0.9669	0.8915	yes	no
B2SAP4	FOLD_BRUA1	3, ., 5, ., 4, ., 9	0.4705	0.9669	0.8795	yes	no
C0RLT3	FOLD_BRUMB	3, ., 5, ., 4, ., 9	0.4705	0.9669	0.8795	yes	no
Q731B2	FOLD_BACC1	3, ., 5, ., 4, ., 9	0.4887	0.9375	0.8916	yes	no
A7GSJ9	FOLD_BACCN	3, ., 5, ., 4, ., 9	0.4907	0.9448	0.8986	yes	no
Q3ASI0	FOLD_CHLCH	3, ., 5, ., 4, ., 9	0.5074	0.9669	0.8915	yes	no
B3EJG9	FOLD_CHLPB	3, ., 5, ., 4, ., 9	0.5036	0.9816	0.8959	yes	no
A9WZ75	FOLD_BRUSI	3, ., 5, ., 4, ., 9	0.4705	0.9669	0.8795	yes	no
B3QUL4	FOLD_CHLT3	3, ., 5, ., 4, ., 9	0.4756	0.9558	0.8843	yes	no
C3P7W0	FOLD_BACAA	3, ., 5, ., 4, ., 9	0.4887	0.9375	0.8916	yes	no
A0LE04	FOLD_MAGSM	3, ., 5, ., 4, ., 9	0.5402	0.9191	0.8771	yes	no
Q2YL33	FOLD_BRUA2	3, ., 5, ., 4, ., 9	0.4705	0.9669	0.8795	yes	no
B4SGR4	FOLD_PELPB	3, ., 5, ., 4, ., 9	0.5150	0.9522	0.8779	yes	no
Q73RS2	FOLD_TREDE	3, ., 5, ., 4, ., 9	0.4907	0.9705	0.9010	yes	no
Q81M50	FOLD_BACAN	3, ., 5, ., 4, ., 9	0.4887	0.9375	0.8916	yes	no
Q635A3	FOLD_BACCZ	3, ., 5, ., 4, ., 9	0.4849	0.9375	0.8916	yes	no
B8FLE5	FOLD_DESAA	3, ., 5, ., 4, ., 9	0.4856	0.9889	0.8907	yes	no
Q2RIB4	FOLD_MOOTA	3, ., 5, ., 4, ., 9	0.5132	0.9338	0.9071	yes	no
C4ZBG7	FOLD_EUBR3	3, ., 5, ., 4, ., 9	0.5175	0.9044	0.8817	yes	no
A1BF67	FOLD_CHLPD	3, ., 5, ., 4, ., 9	0.5018	0.9705	0.8949	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.4.9	0.914
3rd Layer	3.5.4	0.921
3rd Layer	1.5.1	0.921
4th Layer	1.5.1.5	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	272
PLN02897	345	PLN02897, PLN02897, tetrahydrofolate dehydrogenase	1e-178
PLN02616	364	PLN02616, PLN02616, tetrahydrofolate dehydrogenase	1e-144
PLN02516	299	PLN02516, PLN02516, methylenetetrahydrofolate dehy	1e-129
COG0190	283	COG0190, FolD, 5,10-methylene-tetrahydrofolate deh	1e-114
PRK14190	284	PRK14190, PRK14190, bifunctional 5,10-methylene-te	1e-107
PRK10792	285	PRK10792, PRK10792, bifunctional 5,10-methylene-te	1e-103
PRK14189	285	PRK14189, PRK14189, bifunctional 5,10-methylene-te	1e-100
PRK14188	296	PRK14188, PRK14188, bifunctional 5,10-methylene-te	3e-99
PRK14191	285	PRK14191, PRK14191, bifunctional 5,10-methylene-te	4e-98
PRK14174	295	PRK14174, PRK14174, bifunctional 5,10-methylene-te	1e-97
PRK14186	297	PRK14186, PRK14186, bifunctional 5,10-methylene-te	4e-97
PRK14179	284	PRK14179, PRK14179, bifunctional 5,10-methylene-te	4e-95
PRK14185	293	PRK14185, PRK14185, bifunctional 5,10-methylene-te	8e-90
PRK14168	297	PRK14168, PRK14168, bifunctional 5,10-methylene-te	1e-89
PRK14170	284	PRK14170, PRK14170, bifunctional 5,10-methylene-te	2e-88
PRK14194	301	PRK14194, PRK14194, bifunctional 5,10-methylene-te	1e-85
PRK14183	281	PRK14183, PRK14183, bifunctional 5,10-methylene-te	6e-85
PRK14184	286	PRK14184, PRK14184, bifunctional 5,10-methylene-te	3e-83
PRK14193	284	PRK14193, PRK14193, bifunctional 5,10-methylene-te	4e-83
PRK14167	297	PRK14167, PRK14167, bifunctional 5,10-methylene-te	6e-83
pfam02882	160	pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydro	2e-82
cd01080	168	cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding	4e-82
PRK14166	282	PRK14166, PRK14166, bifunctional 5,10-methylene-te	9e-82
PRK14176	287	PRK14176, PRK14176, bifunctional 5,10-methylene-te	1e-81
PRK14175	286	PRK14175, PRK14175, bifunctional 5,10-methylene-te	1e-81
PRK14187	294	PRK14187, PRK14187, bifunctional 5,10-methylene-te	1e-81
PRK14178	279	PRK14178, PRK14178, bifunctional 5,10-methylene-te	4e-78
PRK14182	282	PRK14182, PRK14182, bifunctional 5,10-methylene-te	2e-75
PRK14172	278	PRK14172, PRK14172, bifunctional 5,10-methylene-te	1e-74
PRK14173	287	PRK14173, PRK14173, bifunctional 5,10-methylene-te	2e-74
PRK14181	287	PRK14181, PRK14181, bifunctional 5,10-methylene-te	4e-73
PRK14169	282	PRK14169, PRK14169, bifunctional 5,10-methylene-te	1e-70
PRK14171	288	PRK14171, PRK14171, bifunctional 5,10-methylene-te	1e-70
PRK14192	283	PRK14192, PRK14192, bifunctional 5,10-methylene-te	4e-70
PRK14180	282	PRK14180, PRK14180, bifunctional 5,10-methylene-te	2e-67
PRK14177	284	PRK14177, PRK14177, bifunctional 5,10-methylene-te	1e-66
pfam00763	117	pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydroge	8e-41
cd05212	140	cd05212, NAD_bind_m-THF_DH_Cyclohyd_like, NAD(P) b	1e-27
cd01079	197	cd01079, NAD_bind_m-THF_DH, NAD binding domain of	7e-13

>gnl|CDD|178485 PLN02897, PLN02897, tetrahydrofolate dehydrogenase/cyclohydrolase, putative

 Score =  492 bits (1269), Expect = e-178
 Identities = 209/269 (77%), Positives = 240/269 (89%), Gaps = 3/269 (1%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           MKK++GKVPGLAV+LVG++RDSQTYVRNKIKACEE GIKS++ E  + CTE ++L+AL  
Sbjct: 79  MKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRK 138

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           +N+D+SI+GILVQLPLPQHLDE KIL+ V LEKDVDGFHPLN+GNLAMRGREPLF+ CTP
Sbjct: 139 FNEDTSIHGILVQLPLPQHLDESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTP 198

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGC+ELLIRSGVEI GKNAVVIGRSNIVGLP SLLLQRH ATVS VHA TK+PEQIT +A
Sbjct: 199 KGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRKA 258

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           DIVIAAAG+ NLVRGSWLKPGAVV+DVGT PV+   D SCE+GYRL+GDVCYEEA+ +AS
Sbjct: 259 DIVIAAAGIPNLVRGSWLKPGAVVIDVGTTPVE---DSSCEFGYRLVGDVCYEEALGVAS 315

Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAY 269
            ITPVPGGVGPMT+ MLL NTLD+AKR +
Sbjct: 316 AITPVPGGVGPMTITMLLCNTLDAAKRIF 344

Length = 345

>gnl|CDD|215332 PLN02616, PLN02616, tetrahydrofolate dehydrogenase/cyclohydrolase, putative

 Score =  408 bits (1050), Expect = e-144
 Identities = 192/271 (70%), Positives = 221/271 (81%), Gaps = 3/271 (1%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           MK+SIG VPGLAVILVG+R+DS TYVRNK KAC+ VGI S      +  TE EVL  +S 
Sbjct: 96  MKESIGVVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISG 155

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           +N D S++GILVQLPLP H+DE  IL+AVS+EKDVDGFHPLNIG LAMRGREPLF+PCTP
Sbjct: 156 FNNDPSVHGILVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTP 215

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGCIELL R  VEI GK AVVIGRSNIVG+P +LLLQR  ATVSIVH+ TKNPE+IT EA
Sbjct: 216 KGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITREA 275

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           DI+I+A G  N+VRGSW+KPGAVV+DVG  PV+   D S   GYRL+GDVCYEEA ++AS
Sbjct: 276 DIIISAVGQPNMVRGSWIKPGAVVIDVGINPVE---DASSPRGYRLVGDVCYEEACKVAS 332

Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAYGF 271
            +TPVPGGVGPMT+AMLLSNTL SAKR + F
Sbjct: 333 AVTPVPGGVGPMTIAMLLSNTLTSAKRIHNF 363

Length = 364

>gnl|CDD|178131 PLN02516, PLN02516, methylenetetrahydrofolate dehydrogenase (NADP+)

 Score =  369 bits (949), Expect = e-129
 Identities = 167/270 (61%), Positives = 209/270 (77%), Gaps = 3/270 (1%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           + +  GKVPGLAV++VG R+DSQTYV  K KAC EVGIKS   +  +  +E E+++ +  
Sbjct: 32  LSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHE 91

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N +  ++GILVQLPLP+H++E KIL+ +SLEKDVDGFHPLNIG LAM+GREPLF+PCTP
Sbjct: 92  LNANPDVHGILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGKLAMKGREPLFLPCTP 151

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGC+ELL RSG+ I GK AVV+GRSNIVGLP SLLL +  ATV++VH+ T +PE I  EA
Sbjct: 152 KGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTPDPESIVREA 211

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           DIVIAAAG A +++G W+KPGA V+DVGT  V    DPS + GYRL+GDV + E  ++A 
Sbjct: 212 DIVIAAAGQAMMIKGDWIKPGAAVIDVGTNAVS---DPSKKSGYRLVGDVDFAEVSKVAG 268

Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAYG 270
            ITPVPGGVGPMTVAMLL NT+D AKR + 
Sbjct: 269 WITPVPGGVGPMTVAMLLKNTVDGAKRVFA 298

Length = 299

>gnl|CDD|223268 COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

 Score =  329 bits (845), Expect = e-114
 Identities = 138/268 (51%), Positives = 179/268 (66%), Gaps = 11/268 (4%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           +K   G  PGLAVILVG+   SQ YVR+K KA EE+GI S + +  +  TE+E+L  +  
Sbjct: 23  LKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDE 82

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N D  ++GILVQLPLP+HLDE K+L A+  EKDVDGFHP N+G LA    EP F+PCTP
Sbjct: 83  LNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLA--QGEPGFLPCTP 140

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
            G + LL   G+++ GKN VV+GRSNIVG P +LLL   +ATV++ H+ TK+   IT  A
Sbjct: 141 AGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLASITKNA 200

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           DIV+ A G  + ++   +KPGAVV+DVG   V+           +L+GDV ++     AS
Sbjct: 201 DIVVVAVGKPHFIKADMVKPGAVVIDVGINRVN---------DGKLVGDVDFDSVKEKAS 251

Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRA 268
            ITPVPGGVGPMTVAMLL NTL +A+R 
Sbjct: 252 AITPVPGGVGPMTVAMLLENTLKAAERQ 279

Length = 283

>gnl|CDD|184560 PRK14190, PRK14190, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  313 bits (803), Expect = e-107
 Identities = 134/268 (50%), Positives = 175/268 (65%), Gaps = 11/268 (4%)

Query: 3   KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
           K  G VPGLAVILVG+   S +YVR K KA E+VGI S + EF    TE+E+L  +   N
Sbjct: 27  KEQGIVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLN 86

Query: 63  QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
            D  INGILVQLPLP+H+DE  +++ +S EKDVDGFHP+N+G + +   +  F+PCTP G
Sbjct: 87  ADPRINGILVQLPLPKHIDEKAVIERISPEKDVDGFHPINVGRMML--GQDTFLPCTPHG 144

Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADI 182
            +ELL    ++I GK+ VV+GRSNIVG P   LL   +ATV+  H+ TKN  ++T +ADI
Sbjct: 145 ILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLAELTKQADI 204

Query: 183 VIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVI 242
           +I A G   L+    +K GAVV+DVG   +        E G  L GDV ++     AS I
Sbjct: 205 LIVAVGKPKLITADMVKEGAVVIDVGVNRL--------ENGK-LCGDVDFDNVKEKASYI 255

Query: 243 TPVPGGVGPMTVAMLLSNTLDSAKRAYG 270
           TPVPGGVGPMT+ ML+ NT++ AKRA G
Sbjct: 256 TPVPGGVGPMTITMLMHNTVELAKRAGG 283

Length = 284

>gnl|CDD|236760 PRK10792, PRK10792, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  301 bits (772), Expect = e-103
 Identities = 126/259 (48%), Positives = 162/259 (62%), Gaps = 11/259 (4%)

Query: 7   KVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSS 66
           + PGLAV+LVG    SQ YV +K KACEEVG  S   +  +  +E E+L  +   N D +
Sbjct: 32  RAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNADPT 91

Query: 67  INGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIEL 126
           I+GILVQLPLP H+D  K+L+ +  +KDVDGFHP N+G LA   R PL  PCTP+G + L
Sbjct: 92  IDGILVQLPLPAHIDNVKVLERIHPDKDVDGFHPYNVGRLAQ--RIPLLRPCTPRGIMTL 149

Query: 127 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAA 186
           L R G++  G NAVV+G SNIVG P SL L     TV++ H  TKN       AD+++ A
Sbjct: 150 LERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHHVRNADLLVVA 209

Query: 187 AGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVP 246
            G    + G W+KPGA+V+DVG   ++           +L+GDV +E A   AS ITPVP
Sbjct: 210 VGKPGFIPGEWIKPGAIVIDVGINRLEDG---------KLVGDVEFETAAERASWITPVP 260

Query: 247 GGVGPMTVAMLLSNTLDSA 265
           GGVGPMTVA LL NTL + 
Sbjct: 261 GGVGPMTVATLLENTLQAC 279

Length = 285

>gnl|CDD|184559 PRK14189, PRK14189, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  293 bits (753), Expect = e-100
 Identities = 129/265 (48%), Positives = 174/265 (65%), Gaps = 11/265 (4%)

Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           G  PGLAVILVG+   SQ YVRNK+KACE+ G  S+   +    +E E+L  +   N+D 
Sbjct: 30  GHQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDP 89

Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
            I+GILVQLPLP+H+D  K+++A++ EKDVDGFH  N G L M G +PLF PCTP G ++
Sbjct: 90  KIHGILVQLPLPKHIDSHKVIEAIAPEKDVDGFHVANAGAL-MTG-QPLFRPCTPYGVMK 147

Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA 185
           +L   G+ + G +AVVIGRSNIVG P ++LL +  ATV+I H+ T++    T +ADIV+A
Sbjct: 148 MLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVA 207

Query: 186 AAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPV 245
           A G  N++    +KPGA V+DVG    D           +L GDV +     +A  ITPV
Sbjct: 208 AVGKRNVLTADMVKPGATVIDVGMNRDDAG---------KLCGDVDFAGVKEVAGYITPV 258

Query: 246 PGGVGPMTVAMLLSNTLDSAKRAYG 270
           PGGVGPMT+ MLL NT+++A+RA  
Sbjct: 259 PGGVGPMTITMLLVNTIEAAERAAA 283

Length = 285

>gnl|CDD|184558 PRK14188, PRK14188, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  291 bits (748), Expect = 3e-99
 Identities = 131/273 (47%), Positives = 177/273 (64%), Gaps = 10/273 (3%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           +K + G  PGLAV+LVGE   SQ YVR+K K  +E G+ S   +     ++ E+L  ++ 
Sbjct: 25  LKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIAR 84

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N D +I+GILVQLPLP+HLD   ++ A+  EKDVDG H +N G LA    E   +PCTP
Sbjct: 85  LNADPAIHGILVQLPLPKHLDSEAVIQAIDPEKDVDGLHVVNAGRLA--TGETALVPCTP 142

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
            GC+ LL R   ++ G NAVVIGRSN+VG P + LL   +ATV+I H+ T++   +   A
Sbjct: 143 LGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRA 202

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY---RLMGDVCYEEAMR 237
           DI++AA G   +V+G W+KPGA V+DVG     ++  P+ E G    RL+GDV + EA  
Sbjct: 203 DILVAAVGRPEMVKGDWIKPGATVIDVG-----INRIPAPEKGEGKTRLVGDVAFAEAAE 257

Query: 238 LASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 270
           +A  ITPVPGGVGPMT+A LL+NTL +A RA G
Sbjct: 258 VAGAITPVPGGVGPMTIACLLANTLTAACRAAG 290

Length = 296

>gnl|CDD|172679 PRK14191, PRK14191, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  288 bits (739), Expect = 4e-98
 Identities = 126/266 (47%), Positives = 167/266 (62%), Gaps = 11/266 (4%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           +    GK P LAVILVG+   SQTYV  KIKACE VG+ S +    +  TE E+L+ + +
Sbjct: 24  LTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKD 83

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N D +I+GILVQLPLP+H+D   +L+A+   KDVDGFHPLNIG L     +  F+P TP
Sbjct: 84  LNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGFHPLNIGKLCS-QLDG-FVPATP 141

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
            G + LL    +EI GK+ V+IG SNIVG P ++L+    A+VS+ H LTK+    T  A
Sbjct: 142 MGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNA 201

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           DIV    G  +L++ S +K GAVV+D+G   ++           RL+GDV +E     AS
Sbjct: 202 DIVCVGVGKPDLIKASMVKKGAVVVDIGINRLNDG---------RLVGDVDFENVAPKAS 252

Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAK 266
            ITPVPGGVGPMT+  LL NTL +A+
Sbjct: 253 FITPVPGGVGPMTIVSLLENTLIAAE 278

Length = 285

>gnl|CDD|172662 PRK14174, PRK14174, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  287 bits (737), Expect = 1e-97
 Identities = 137/273 (50%), Positives = 177/273 (64%), Gaps = 7/273 (2%)

Query: 2   KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNY 61
           +   GKVPGL VI+VGE   SQ YVRNK K+C+E+G+ S V E     TE+ +L  + + 
Sbjct: 25  RAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDL 84

Query: 62  NQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPK 121
           N D  ++GILVQ PLP+ +DE  +  A+   KDVDGFHP N+G L M   +  F+ CTP 
Sbjct: 85  NNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGFHPENLGRLVMGHLDKCFVSCTPY 144

Query: 122 GCIELLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQRHHA---TVSIVHALTKNPEQIT 177
           G +ELL R  +E  GK+ VV+GRSNIVG P  +L+LQ+      TV+I H+ TK+    T
Sbjct: 145 GILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATKDIPSYT 204

Query: 178 SEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMR 237
            +ADI+IAA G A  +    +KPGAVV+DVG   ++   DPS + GYRL+GDV YE    
Sbjct: 205 RQADILIAAIGKARFITADMVKPGAVVIDVGINRIE---DPSTKSGYRLVGDVDYEGVSA 261

Query: 238 LASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 270
            AS ITPVPGGVGPMT+AMLL NTL S +R   
Sbjct: 262 KASAITPVPGGVGPMTIAMLLKNTLQSFERVNN 294

Length = 295

>gnl|CDD|237636 PRK14186, PRK14186, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  286 bits (734), Expect = 4e-97
 Identities = 130/269 (48%), Positives = 173/269 (64%), Gaps = 7/269 (2%)

Query: 2   KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNY 61
               G+ PGLAV+ VG+   S  YVRNK KAC  VGI S         ++ EV   ++  
Sbjct: 26  LPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQL 85

Query: 62  NQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPK 121
           NQD  ++GIL+QLPLP+HLDE  +L A+  +KD DG HPLN+G L ++G EP    CTP 
Sbjct: 86  NQDERVDGILLQLPLPKHLDEVPLLHAIDPDKDADGLHPLNLGRL-VKG-EPGLRSCTPA 143

Query: 122 GCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEAD 181
           G + LL    ++I GK AVV+GRS +VG P +L+L   +ATV+I H+ T++   IT EAD
Sbjct: 144 GVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQDLASITREAD 203

Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASV 241
           I++AAAG  NL+    +KPGAVV+DVG     +   PS +   RL GDV +EE   +A+ 
Sbjct: 204 ILVAAAGRPNLIGAEMVKPGAVVVDVG-----IHRLPSSDGKTRLCGDVDFEEVEPVAAA 258

Query: 242 ITPVPGGVGPMTVAMLLSNTLDSAKRAYG 270
           ITPVPGGVGPMTV MLL NT+ S ++ +G
Sbjct: 259 ITPVPGGVGPMTVTMLLVNTVLSWQKRHG 287

Length = 297

>gnl|CDD|237634 PRK14179, PRK14179, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  280 bits (719), Expect = 4e-95
 Identities = 129/267 (48%), Positives = 180/267 (67%), Gaps = 11/267 (4%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           +K+  G VPGL VILVG+   SQ YVRNK ++    G KS V    +  +++E+L+ +  
Sbjct: 25  LKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIER 84

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           YNQD + +GILVQLPLP+H++E KIL A+  +KDVDGFHP+N G+L   GR P+ IPCTP
Sbjct: 85  YNQDPTWHGILVQLPLPKHINEEKILLAIDPKKDVDGFHPMNTGHL-WSGR-PVMIPCTP 142

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
            G +E+     VE+ GK+AVVIGRSNIVG P + LL   +ATV++ H+ T+N  ++  +A
Sbjct: 143 AGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKA 202

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           DI++ A G  + V   ++K GAVV+DVG     ++ D   E G +L+GDV ++E   +AS
Sbjct: 203 DILVVAIGRGHFVTKEFVKEGAVVIDVG-----MNRD---ENG-KLIGDVDFDEVAEVAS 253

Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKR 267
            ITPVPGGVGPMT+ ML+  T  +A R
Sbjct: 254 YITPVPGGVGPMTITMLMEQTYQAALR 280

Length = 284

>gnl|CDD|184556 PRK14185, PRK14185, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  267 bits (685), Expect = 8e-90
 Identities = 125/268 (46%), Positives = 174/268 (64%), Gaps = 9/268 (3%)

Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           GK P LA ILVG    S+TYV NK+KACEE G KS +  +    TE+E+L  +   NQD 
Sbjct: 29  GKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRELNQDD 88

Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
            ++G +VQLPLP+H+ E K+++A+   KDVDGFHP+N+G +++    P F+  TP G +E
Sbjct: 89  DVDGFIVQLPLPKHISEQKVIEAIDYRKDVDGFHPINVGRMSI--GLPCFVSATPNGILE 146

Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQRHH---ATVSIVHALTKNPEQITSEAD 181
           LL R  +E  GK  VV+GRSNIVG P   L++Q+ +    TV++ H+ +KN ++   EAD
Sbjct: 147 LLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLEAD 206

Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASV 241
           I+IAA G    V+   +K GAVV+DVGT  V    D + + G++L GDV ++E     S 
Sbjct: 207 IIIAALGQPEFVKADMVKEGAVVIDVGTTRVP---DATRKSGFKLTGDVKFDEVAPKCSY 263

Query: 242 ITPVPGGVGPMTVAMLLSNTLDSAKRAY 269
           ITPVPGGVGPMT+  L+ NTL + K+A 
Sbjct: 264 ITPVPGGVGPMTIVSLMKNTLLAGKKAI 291

Length = 293

>gnl|CDD|237633 PRK14168, PRK14168, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  267 bits (684), Expect = 1e-89
 Identities = 135/275 (49%), Positives = 176/275 (64%), Gaps = 7/275 (2%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           +K+  GKVPGL  ILVGE   S +YV  KIK    +G   I    +   TE+E+L  +  
Sbjct: 26  LKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDK 85

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           YN D SI+GILVQLPLP+H++E K+L+A+  +KDVDGFHP+N+G L + G E  F+PCTP
Sbjct: 86  YNNDDSIHGILVQLPLPKHINEKKVLNAIDPDKDVDGFHPVNVGRLMIGGDEVKFLPCTP 145

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----HATVSIVHALTKNPEQI 176
            G  E+L+RSGVE  G   VV+GRSNIVG P + ++ +     +ATV+IVH  +KN  + 
Sbjct: 146 AGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRSKNLARH 205

Query: 177 TSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAM 236
              ADI+I AAGV NLV+  W+KPGA V+DVG   V  +          L GDV ++   
Sbjct: 206 CQRADILIVAAGVPNLVKPEWIKPGATVIDVGVNRVGTNESTGKAI---LSGDVDFDAVK 262

Query: 237 RLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF 271
            +A  ITPVPGGVGPMT+AML+ NTL SAK     
Sbjct: 263 EIAGKITPVPGGVGPMTIAMLMRNTLKSAKFHLSL 297

Length = 297

>gnl|CDD|172658 PRK14170, PRK14170, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  264 bits (675), Expect = 2e-88
 Identities = 134/265 (50%), Positives = 189/265 (71%), Gaps = 11/265 (4%)

Query: 5   IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQD 64
            GK PGLAV+LVG+ + S+TYVRNK K  EE G+KS++ E  +  TE+++L+ +   N+D
Sbjct: 28  EGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNED 87

Query: 65  SSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCI 124
            +I+GILVQLPLP+H+ E K++D +S +KDVDGFHP+N+GNL + G++  F+PCTP G I
Sbjct: 88  KTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGII 145

Query: 125 ELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVI 184
           EL+  +G +I GK AVVIGRSNIVG P + LL   +ATV+I H+ TK+  Q+  EADI++
Sbjct: 146 ELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILV 205

Query: 185 AAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITP 244
            A G+A  V+  ++KPGA+V+DVG            +   +L GDV +++ +  A  ITP
Sbjct: 206 VATGLAKFVKKDYIKPGAIVIDVGM---------DRDENNKLCGDVDFDDVVEEAGFITP 256

Query: 245 VPGGVGPMTVAMLLSNTLDSAKRAY 269
           VPGGVGPMT+ MLL+NTL +AKR +
Sbjct: 257 VPGGVGPMTITMLLANTLKAAKRIW 281

Length = 284

>gnl|CDD|172682 PRK14194, PRK14194, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  257 bits (658), Expect = 1e-85
 Identities = 127/265 (47%), Positives = 177/265 (66%), Gaps = 10/265 (3%)

Query: 3   KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
           K+ G  P LAVILVG    SQ YVRNKI   EE GI+S+        ++  +L  ++  N
Sbjct: 28  KAAGIEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELN 87

Query: 63  QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
            D S+NGIL+QLPLP H+DE ++L A++  KDVDGFH  N+G L+ +GR+ L  PCTP G
Sbjct: 88  ADPSVNGILLQLPLPAHIDEARVLQAINPLKDVDGFHSENVGGLS-QGRDVL-TPCTPSG 145

Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADI 182
           C+ LL  +  ++ GK+AVVIGRSNIVG P + LL + H +V++VH+ + + + +  +ADI
Sbjct: 146 CLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADI 205

Query: 183 VIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY-RLMGDVCYEEAMRLASV 241
           V+AA G   L+   WLKPGAVV+DVG   +D       + G  RL+GDV ++ A+ + S 
Sbjct: 206 VVAAVGRPRLIDADWLKPGAVVIDVGINRID-------DDGRSRLVGDVDFDSALPVVSA 258

Query: 242 ITPVPGGVGPMTVAMLLSNTLDSAK 266
           ITPVPGGVGPMT+A L+ NT+ +A+
Sbjct: 259 ITPVPGGVGPMTIAFLMKNTVTAAR 283

Length = 301

>gnl|CDD|184555 PRK14183, PRK14183, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  255 bits (652), Expect = 6e-85
 Identities = 128/266 (48%), Positives = 171/266 (64%), Gaps = 11/266 (4%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           +K     VPGLAVILVG+   S TYV+ K KAC+ VGI SI  E     ++ E+L  ++ 
Sbjct: 24  LKLVKNIVPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAM 83

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N + +I+GILVQLPLP+H+D  KIL+A+  +KDVDGFHP N+G L + G +  F+PCTP
Sbjct: 84  MNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGFHPYNVGRL-VTGLDG-FVPCTP 141

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
            G +ELL    +++ GK+  V+G SNIVG P + LL   +ATV I H  TK+ +  T +A
Sbjct: 142 LGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKAHTKKA 201

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           DIVI   G  NL+    +K GA+V+D+G    +           RL+GDV +E   +  S
Sbjct: 202 DIVIVGVGKPNLITEDMVKEGAIVIDIGINRTEDG---------RLVGDVDFENVAKKCS 252

Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAK 266
            ITPVPGGVGPMT+AMLLSNTL +AK
Sbjct: 253 YITPVPGGVGPMTIAMLLSNTLKAAK 278

Length = 281

>gnl|CDD|237635 PRK14184, PRK14184, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  250 bits (641), Expect = 3e-83
 Identities = 123/265 (46%), Positives = 159/265 (60%), Gaps = 16/265 (6%)

Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           G+ PGLAVILVGE   SQ YVRNK +ACE+ GI S         T++E+ + ++  N   
Sbjct: 29  GRAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNARP 88

Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
            I+GIL+QLPLP+ LD  + L+ +   KDVDGFHP N+G LA+    P F PCTP G + 
Sbjct: 89  DIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFHPENMGRLAL--GLPGFRPCTPAGVMT 146

Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----HATVSIVHALTKNPEQITSEAD 181
           LL R G+   GK AVV+GRSNIVG P +L+L       +ATV++ H+ T +  +   EAD
Sbjct: 147 LLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTPDLAEECREAD 206

Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASV 241
            +  A G    V    +KPGAVV+DVG    D            L+GD  +E    +AS 
Sbjct: 207 FLFVAIGRPRFVTADMVKPGAVVVDVGINRTDDG----------LVGDCDFEGLSDVASA 256

Query: 242 ITPVPGGVGPMTVAMLLSNTLDSAK 266
           ITPVPGGVGPMT+A LL NT+ S K
Sbjct: 257 ITPVPGGVGPMTIAQLLVNTVQSWK 281

Length = 286

>gnl|CDD|237637 PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  250 bits (641), Expect = 4e-83
 Identities = 121/273 (44%), Positives = 160/273 (58%), Gaps = 20/273 (7%)

Query: 3   KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
           K  G  PGL  +LVG+   SQ YVR K + C EVGI SI  +     T++E+   +   N
Sbjct: 27  KEKGITPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELN 86

Query: 63  QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
            D +  G +VQLPLP+HLDE  +L+ +   KD DG HP N+G L +    PL  PCTP+G
Sbjct: 87  ADPACTGYIVQLPLPKHLDENAVLERIDPAKDADGLHPTNLGRLVLNEPAPL--PCTPRG 144

Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALTKNPEQITSEA 180
            + LL R  VE+ G + VVIGR   VG P  LLL R    ATV++ H  T++    T  A
Sbjct: 145 IVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGTRDLAAHTRRA 204

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDV---CYEEAMR 237
           DI++AAAGVA+LV    +KPGA VLDVG   V  + D       +L+GDV    +E    
Sbjct: 205 DIIVAAAGVAHLVTADMVKPGAAVLDVG---VSRAGD------GKLVGDVHPDVWE---- 251

Query: 238 LASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 270
           +A  ++P PGGVGPMT A LL+N ++ A+R  G
Sbjct: 252 VAGAVSPNPGGVGPMTRAFLLTNVVERAERRAG 284

Length = 284

>gnl|CDD|184549 PRK14167, PRK14167, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  250 bits (640), Expect = 6e-83
 Identities = 124/269 (46%), Positives = 166/269 (61%), Gaps = 10/269 (3%)

Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           G  PGLA +L+ +   S+TYV  K + CEEVGI++I  E       +E+ + +   N D 
Sbjct: 29  GVTPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADE 88

Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
            ++GILVQ+P+P H+D+ ++L  +   KDVDGFHP N+G L     +  F PCTP G  +
Sbjct: 89  DVHGILVQMPVPDHVDDREVLRRIDPAKDVDGFHPENVGRLV--AGDARFKPCTPHGIQK 146

Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQRHH---ATVSIVHALTKNPEQITSEAD 181
           LL  +GV+  G + VV+GRS+IVG P  +LL+Q+     ATV++ H+ T +    T  AD
Sbjct: 147 LLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRTDDLAAKTRRAD 206

Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASV 241
           IV+AAAGV  L+ GS L  GA V+DVG       VD   E GY L+GDV +E A   AS 
Sbjct: 207 IVVAAAGVPELIDGSMLSEGATVIDVGIN----RVDADTEKGYELVGDVEFESAKEKASA 262

Query: 242 ITPVPGGVGPMTVAMLLSNTLDSAKRAYG 270
           ITPVPGGVGPMT AMLL NT+ +A    G
Sbjct: 263 ITPVPGGVGPMTRAMLLYNTVKAASLQEG 291

Length = 297

>gnl|CDD|217267 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain

 Score =  243 bits (624), Expect = 2e-82
 Identities = 91/170 (53%), Positives = 119/170 (70%), Gaps = 11/170 (6%)

Query: 99  HPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR 158
           HP+N+G L +   EP F+PCTP+G +ELL R G+++ GKN VVIGRSNIVG P +LLL  
Sbjct: 1   HPINLGRLVLG--EPGFVPCTPRGIMELLKRYGIDLAGKNVVVIGRSNIVGKPLALLLLN 58

Query: 159 HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDP 218
            +ATV++ H+ TK+  +IT EADIV+ A G   L++  W+KPGAVV+DVG   V+     
Sbjct: 59  ANATVTVCHSKTKDLAEITREADIVVVAVGKPGLIKADWVKPGAVVIDVGINRVE----- 113

Query: 219 SCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 268
                 +L+GDV +E     AS ITPVPGGVGPMTVAMLL NT+++AKR 
Sbjct: 114 ----NGKLVGDVDFENVKEKASAITPVPGGVGPMTVAMLLQNTVEAAKRQ 159

Length = 160

>gnl|CDD|133448 cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

 Score =  243 bits (623), Expect = 4e-82
 Identities = 98/175 (56%), Positives = 124/175 (70%), Gaps = 8/175 (4%)

Query: 92  EKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLP 151
           EKDVDG HP+N+G LA+    P FIPCTP G +ELL R G+++ GK  VV+GRSNIVG P
Sbjct: 2   EKDVDGLHPVNLGRLALGR--PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKP 59

Query: 152 TSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCP 211
            + LL   +ATV++ H+ TKN ++ T +ADIVI A G   LV+G  +KPGAVV+DVG   
Sbjct: 60  LAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGINR 119

Query: 212 VDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 266
           V    D S   G +L+GDV +E A   AS ITPVPGGVGPMTVAML+ NT+++AK
Sbjct: 120 VP---DKS---GGKLVGDVDFESAKEKASAITPVPGGVGPMTVAMLMKNTVEAAK 168

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well as bifunctional m-THF m-THF DHm-THF DHDH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains the bifunctional DH/cyclohydrolase. M-THF DH, like other amino acid DH-like NAD(P)-binding domains, is a member of the Rossmann fold superfamily which includes glutamate, leucine, and phenylalanine DHs, m-THF DH, methylene-tetrahydromethanopterin DH, m-THF DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. Length = 168

>gnl|CDD|172654 PRK14166, PRK14166, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  246 bits (630), Expect = 9e-82
 Identities = 128/264 (48%), Positives = 177/264 (67%), Gaps = 10/264 (3%)

Query: 3   KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
           KS G    LAVILVG+   SQTYV++K KACEE GIKS+V    +  T++E+L  ++  N
Sbjct: 25  KSKGIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLN 84

Query: 63  QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
            D S++GILVQLPLP H+ +  IL+++   KDVDGFHP+N+G L + G E  F+PCTP G
Sbjct: 85  HDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNL-GLESGFLPCTPLG 143

Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADI 182
            ++LL    +++ GK+AV+IG SNIVG P + +L    ATVS+ H  TK+    T +AD+
Sbjct: 144 VMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADL 203

Query: 183 VIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVI 242
           +I AAG  NL+R   +K G +V+DVG   ++           +++GDV +EE  + +S I
Sbjct: 204 IIVAAGCVNLLRSDMVKEGVIVVDVGINRLESG---------KIVGDVDFEEVSKKSSYI 254

Query: 243 TPVPGGVGPMTVAMLLSNTLDSAK 266
           TPVPGGVGPMT+AMLL NT+ SAK
Sbjct: 255 TPVPGGVGPMTIAMLLENTVKSAK 278

Length = 282

>gnl|CDD|184553 PRK14176, PRK14176, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  247 bits (631), Expect = 1e-81
 Identities = 117/269 (43%), Positives = 170/269 (63%), Gaps = 12/269 (4%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           +K + G  PGLA ILVG+   S+ YVR K KACE VGI++         T++E+L  + +
Sbjct: 31  LKSNRGITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDS 90

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N+   ++GIL+QLPLP+HLD  + ++A+   KD DGFHP N+G L M G E   +PCTP
Sbjct: 91  LNKRKDVHGILLQLPLPKHLDPQEAMEAIDPAKDADGFHPYNMGKL-MIGDEG-LVPCTP 148

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
            G I  L   GV+I GKNAV++G SN+VG P + +L   +ATVS+ H  T + ++ T +A
Sbjct: 149 HGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYTLDA 208

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           DI++ A GV +L++   +K GAV+ DVG    +  V           GDV +E  ++ AS
Sbjct: 209 DILVVATGVKHLIKADMVKEGAVIFDVGITKEEDKV----------YGDVDFENVIKKAS 258

Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAY 269
           +ITPVPGGVGP+T+AML+ + L  A+++ 
Sbjct: 259 LITPVPGGVGPLTIAMLMKHVLMCAEKSL 287

Length = 287

>gnl|CDD|184552 PRK14175, PRK14175, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  247 bits (631), Expect = 1e-81
 Identities = 127/270 (47%), Positives = 179/270 (66%), Gaps = 11/270 (4%)

Query: 3   KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
           K  G  P L+VILVG    SQ+YVR+K KA E++G+ S +    +  TE+EVLN L+  N
Sbjct: 27  KEKGFTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLN 86

Query: 63  QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
            D S++GILVQ+PLP+ + E KIL+A++ EKDVDGFHP+NIG L +   E  F+PCTP G
Sbjct: 87  NDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYI--DEQTFVPCTPLG 144

Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADI 182
            +E+L  + +++ GKNAVVIGRS+IVG P S LL + +A+V+I+H+ +K+      +AD+
Sbjct: 145 IMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADV 204

Query: 183 VIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVI 242
           +++A G   LV    +K GAV++DVG  P         E G +L GDV Y+    +A  I
Sbjct: 205 IVSAVGKPGLVTKDVVKEGAVIIDVGNTPD--------ENG-KLKGDVDYDAVKEIAGAI 255

Query: 243 TPVPGGVGPMTVAMLLSNTLDSAKRAYGFT 272
           TPVPGGVGP+T+ M+L+NTL + K   G  
Sbjct: 256 TPVPGGVGPLTITMVLNNTLLAEKMRRGID 285

Length = 286

>gnl|CDD|172675 PRK14187, PRK14187, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  247 bits (631), Expect = 1e-81
 Identities = 114/265 (43%), Positives = 165/265 (62%), Gaps = 6/265 (2%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           +K+     P L VILVG+   SQ YVRNK +  E +G++S         +E  ++  ++ 
Sbjct: 25  LKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINE 84

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N D S++GILVQLP+P H+D+  I++ +  EKDVDGFH  N+G L    ++   IPCTP
Sbjct: 85  LNNDDSVHGILVQLPVPNHIDKNLIINTIDPEKDVDGFHNENVGRLFTGQKKNCLIPCTP 144

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGC+ L+      + G +AVVIGRSNIVG P + LL   + TV+ VH+ T++     S+A
Sbjct: 145 KGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATRDLADYCSKA 204

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           DI++AA G+ N V+ SW+K GA+V+DVG   ++           + +GDV + E  + AS
Sbjct: 205 DILVAAVGIPNFVKYSWIKKGAIVIDVGINSIEE------GGVKKFVGDVDFAEVKKKAS 258

Query: 241 VITPVPGGVGPMTVAMLLSNTLDSA 265
            ITPVPGGVGPMT+A L+ NT+ +A
Sbjct: 259 AITPVPGGVGPMTIAFLMVNTVIAA 283

Length = 294

>gnl|CDD|172666 PRK14178, PRK14178, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  237 bits (606), Expect = 4e-78
 Identities = 122/261 (46%), Positives = 160/261 (61%), Gaps = 12/261 (4%)

Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           G  P LA ++VG+   SQ YVR K +ACE VGI S+  E     T   VL  +   N+D 
Sbjct: 24  GLYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNEDP 83

Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
            INGILVQLPLP+ +D  +++ A+  EKDVDGFHPLN+G L + G  P F PCTP G + 
Sbjct: 84  DINGILVQLPLPKGVDTERVIAAILPEKDVDGFHPLNLGRL-VSGL-PGFAPCTPNGIMT 141

Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA 185
           LL    + I GK AVV+GRS  VG P + LL    ATV+I H+ T+N +    +ADI+++
Sbjct: 142 LLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVS 201

Query: 186 AAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPV 245
           AAG A  +    +KPGA V+DVG   V+           +L GDV ++    +A  ITPV
Sbjct: 202 AAGKAGFITPDMVKPGATVIDVGINQVN----------GKLCGDVDFDAVKEIAGAITPV 251

Query: 246 PGGVGPMTVAMLLSNTLDSAK 266
           PGGVGPMT+A L+ NT D+AK
Sbjct: 252 PGGVGPMTIATLMENTFDAAK 272

Length = 279

>gnl|CDD|172670 PRK14182, PRK14182, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  230 bits (588), Expect = 2e-75
 Identities = 125/265 (47%), Positives = 168/265 (63%), Gaps = 10/265 (3%)

Query: 3   KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
            + G   GL V+ VG+   S  YVR K K CEEVGI S+        T+ E+L  ++  N
Sbjct: 25  AARGVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLN 84

Query: 63  QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
            D +++GILVQLPLP+H+DE  +LDA+S  KD DGFHP N+G L++ G   +  PCTP G
Sbjct: 85  ADPAVHGILVQLPLPKHVDERAVLDAISPAKDADGFHPFNVGALSI-GIAGVPRPCTPAG 143

Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADI 182
            + +L  + V+  GK A+V+GRSNIVG P +++L   HATV+I H+ T +       ADI
Sbjct: 144 VMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGEVGRADI 203

Query: 183 VIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVI 242
           ++AA G A LV+G+W+K GAVV+DVG   +            +L+GDV +  A   AS I
Sbjct: 204 LVAAIGKAELVKGAWVKEGAVVIDVGMNRLADG---------KLVGDVEFAAAAARASAI 254

Query: 243 TPVPGGVGPMTVAMLLSNTLDSAKR 267
           TPVPGGVGPMT AMLL NT++ AKR
Sbjct: 255 TPVPGGVGPMTRAMLLVNTVELAKR 279

Length = 282

>gnl|CDD|172660 PRK14172, PRK14172, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  228 bits (584), Expect = 1e-74
 Identities = 98/265 (36%), Positives = 158/265 (59%), Gaps = 12/265 (4%)

Query: 2   KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNY 61
           K++   +P +A ILVG    S  Y+ N+ K    +GI     +  +  +E++++N +   
Sbjct: 26  KENGLSIPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEEL 85

Query: 62  NQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPK 121
           N+D++++GI++QLPLP+HLDE KI + +   KD+D    +++G       E  F+PCTP 
Sbjct: 86  NKDNNVHGIMLQLPLPKHLDEKKITNKIDANKDIDCLTFISVGKFYKG--EKCFLPCTPN 143

Query: 122 GCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEAD 181
             I L+    ++I GK  VVIGRSNIVG P + LL   +ATV+I H+ TKN +++  +AD
Sbjct: 144 SVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNLKEVCKKAD 203

Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASV 241
           I++ A G    +   ++K GA+V+DVGT  V+           ++ GDV +++ +  AS 
Sbjct: 204 ILVVAIGRPKFIDEEYVKEGAIVIDVGTSSVN----------GKITGDVNFDKVIDKASY 253

Query: 242 ITPVPGGVGPMTVAMLLSNTLDSAK 266
           ITPVPGGVG +T  +L+ N  ++ K
Sbjct: 254 ITPVPGGVGSLTTTLLIKNVCEALK 278

Length = 278

>gnl|CDD|184551 PRK14173, PRK14173, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  228 bits (583), Expect = 2e-74
 Identities = 117/263 (44%), Positives = 165/263 (62%), Gaps = 8/263 (3%)

Query: 8   VPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSI 67
           VP L V+ +GE   S +YVR K +  + +G++S V    +  +++E+L  ++  N D  +
Sbjct: 29  VPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNADPEV 88

Query: 68  NGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELL 127
           +GILVQLPLP H+D  ++L+A+   KDVDGFHPLN+G L M G E L  PCTP G + LL
Sbjct: 89  DGILVQLPLPPHIDFQRVLEAIDPLKDVDGFHPLNVGRLWM-GGEALE-PCTPAGVVRLL 146

Query: 128 IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAA 187
              G+ + GK  VV+GRSNIVG P + LL R  ATV++ H+ T++   +T  AD+++ A 
Sbjct: 147 KHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQDLPAVTRRADVLVVAV 206

Query: 188 GVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPG 247
           G  +L+    ++PGAVV+DVG   V             L GDV  E A  +A  +TPVPG
Sbjct: 207 GRPHLITPEMVRPGAVVVDVGINRV-----GGNGGRDILTGDVHPEVA-EVAGALTPVPG 260

Query: 248 GVGPMTVAMLLSNTLDSAKRAYG 270
           GVGPMTVAML++NT+ +A R  G
Sbjct: 261 GVGPMTVAMLMANTVIAALRRRG 283

Length = 287

>gnl|CDD|172669 PRK14181, PRK14181, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  225 bits (574), Expect = 4e-73
 Identities = 117/263 (44%), Positives = 164/263 (62%), Gaps = 9/263 (3%)

Query: 9   PGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 68
           PGLAV+L+G    S+ YV  K+K   ++G+ S         T  ++L  +   N D +I+
Sbjct: 27  PGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDPNIH 86

Query: 69  GILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLI 128
           GILVQLPLP+HLD   IL A+S +KDVDG HP+N+G L + G    FIPCTP G IELL 
Sbjct: 87  GILVQLPLPKHLDAQAILQAISPDKDVDGLHPVNMGKLLL-GETDGFIPCTPAGIIELLK 145

Query: 129 RSGVEIMGKNAVVIGRSNIVGLP-TSLLLQRH---HATVSIVHALTKNPEQITSEADIVI 184
              + + G++  ++GRSNIVG P  +LL+Q+H   +ATV+++H+ ++N  +I   ADI+I
Sbjct: 146 YYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQSENLTEILKTADIII 205

Query: 185 AAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITP 244
           AA GV   ++   +   AV++DVGT  V  +       GY L+GDV +   +     ITP
Sbjct: 206 AAIGVPLFIKEEMIAEKAVIVDVGTSRVPAANPK----GYILVGDVDFNNVVPKCRAITP 261

Query: 245 VPGGVGPMTVAMLLSNTLDSAKR 267
           VPGGVGPMTVAML+ NT +S  R
Sbjct: 262 VPGGVGPMTVAMLMRNTWESYLR 284

Length = 287

>gnl|CDD|184550 PRK14169, PRK14169, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  219 bits (558), Expect = 1e-70
 Identities = 112/262 (42%), Positives = 163/262 (62%), Gaps = 11/262 (4%)

Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
              P LAV+LVG    S+ YVRNK +  E++G++S++    +  T+ ++L  ++  N D 
Sbjct: 28  DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDP 87

Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
            ++ ILVQLPLP  LDE  ++DA+  +KDVDGF P+++G L     EP  +  TP G + 
Sbjct: 88  DVDAILVQLPLPAGLDEQAVIDAIDPDKDVDGFSPVSVGRLWA--NEPTVVASTPYGIMA 145

Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA 185
           LL    +++ GK  V++GRSNIVG P + L+  H ATV+I H+ T+N +Q+T EADI++ 
Sbjct: 146 LLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRNLKQLTKEADILVV 205

Query: 186 AAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPV 245
           A GV + +    +KPGAVV+DVG   +    D        L+GDV       +AS ITPV
Sbjct: 206 AVGVPHFIGADAVKPGAVVIDVG---ISRGADGK------LLGDVDEAAVAPIASAITPV 256

Query: 246 PGGVGPMTVAMLLSNTLDSAKR 267
           PGGVGPMT+A L++ T+  AKR
Sbjct: 257 PGGVGPMTIASLMAQTVTLAKR 278

Length = 282

>gnl|CDD|172659 PRK14171, PRK14171, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  218 bits (557), Expect = 1e-70
 Identities = 111/269 (41%), Positives = 164/269 (60%), Gaps = 10/269 (3%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           +K      P LA++LVG+   S  YV+NKIK   ++GI +++   +     +++++ ++ 
Sbjct: 25  LKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINE 84

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N D+ I+GI+VQLPLP  +D+ KIL AVS  KD+DGFHPLN+G L   G    FIPCT 
Sbjct: 85  LNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFHPLNVGYL-HSGISQGFIPCTA 143

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
            GC+ ++ +    + GKN V+IGRSNIVG P S LL + + +V+I H+ T N   ITS+A
Sbjct: 144 LGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHNLSSITSKA 203

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           DIV+AA G    +   +  P ++V+DVG   +          G +++GDV +E       
Sbjct: 204 DIVVAAIGSPLKLTAEYFNPESIVIDVGINRIS---------GNKIIGDVDFENVKSKVK 254

Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAY 269
            ITPVPGG+GPMT+A LL NT+ + K + 
Sbjct: 255 YITPVPGGIGPMTIAFLLKNTVKAFKDSL 283

Length = 288

>gnl|CDD|184561 PRK14192, PRK14192, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  217 bits (554), Expect = 4e-70
 Identities = 107/270 (39%), Positives = 158/270 (58%), Gaps = 12/270 (4%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           +K   G+ P LA ILVG+   S TYVR K  AC  VG+ S+  E     T +++L  +  
Sbjct: 26  LKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEE 85

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N +  ++GIL+Q P+P  +DE    DA+SL KDVDG   L  G +AM   E  +   TP
Sbjct: 86  LNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATP 143

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
            G + LL    +E+ GK+AVV+GRS I+G P +++L   +ATV+I H+ T+N  ++  +A
Sbjct: 144 AGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLPELVKQA 203

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           DI++ A G   L++  W+K GAVV+D G  P D             +GD+  +    +AS
Sbjct: 204 DIIVGAVGKPELIKKDWIKQGAVVVDAGFHPRDGGG----------VGDIELQGIEEIAS 253

Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAYG 270
             TPVPGGVGPMT+  L+  T+++A++A G
Sbjct: 254 AYTPVPGGVGPMTINTLIRQTVEAAEKALG 283

Length = 283

>gnl|CDD|172668 PRK14180, PRK14180, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  210 bits (536), Expect = 2e-67
 Identities = 113/265 (42%), Positives = 155/265 (58%), Gaps = 11/265 (4%)

Query: 2   KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNY 61
           K      P L  I+VG    S+TYV +K KAC +VGI S V    +  TE E+L  +   
Sbjct: 25  KHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQL 84

Query: 62  NQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPK 121
           N DSS++ ILVQLPLP H+++  ++ ++  EKDVDGFHP N+G L +R ++ L   CTPK
Sbjct: 85  NNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLE-SCTPK 143

Query: 122 GCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEAD 181
           G + +L   G++  G  AVV+G SN+VG P S LL    ATV+  H  T + +  T++AD
Sbjct: 144 GIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKAD 203

Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASV 241
           I+I A G  N +    +K GAVV+DVG   VD           +++GDV +       + 
Sbjct: 204 ILIVAVGKPNFITADMVKEGAVVIDVGINHVD----------GKIVGDVDFAAVKDKVAA 253

Query: 242 ITPVPGGVGPMTVAMLLSNTLDSAK 266
           ITPVPGGVGPMT+  LL NT   A+
Sbjct: 254 ITPVPGGVGPMTITELLYNTFQCAQ 278

Length = 282

>gnl|CDD|172665 PRK14177, PRK14177, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  208 bits (530), Expect = 1e-66
 Identities = 110/263 (41%), Positives = 160/263 (60%), Gaps = 15/263 (5%)

Query: 7   KVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSS 66
           ++P LA ILVG    S+TYV  K+KAC +VG+ S +    +  T +E+L  +   N D +
Sbjct: 32  RIPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPN 91

Query: 67  INGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIEL 126
           ++GIL+Q P+P  +DE    D ++LEKDVDG   L+ G L+M G E  ++PCTP G + L
Sbjct: 92  VDGILLQHPVPSQIDERAAFDRIALEKDVDGVTTLSFGKLSM-GVET-YLPCTPYGMVLL 149

Query: 127 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAA 186
           L   G+++ GKNAVV+GRS I+G P ++LL   +ATV++ H+ T+N   I  +ADI++ A
Sbjct: 150 LKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLPSIVRQADIIVGA 209

Query: 187 AGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVP 246
            G    ++  W+  GAV+LD G  P +V             GD+   +A   +S  TPVP
Sbjct: 210 VGKPEFIKADWISEGAVLLDAGYNPGNV-------------GDIEISKAKDKSSFYTPVP 256

Query: 247 GGVGPMTVAMLLSNTLDSAKRAY 269
           GGVGPMT+A+LL  TL S K  +
Sbjct: 257 GGVGPMTIAVLLLQTLYSFKEHF 279

Length = 284

>gnl|CDD|201431 pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain

 Score =  136 bits (345), Expect = 8e-41
 Identities = 51/94 (54%), Positives = 66/94 (70%)

Query: 3   KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
           K  G  P LAVILVG+   SQ YVR+K KA EE+GI+S +    +  TE+E+L  +   N
Sbjct: 24  KEKGITPKLAVILVGDDPASQVYVRSKRKAAEELGIESELIRLPEDITEEELLALIEKLN 83

Query: 63  QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVD 96
            D S++GILVQLPLP+H+DE KIL+A+  EKDVD
Sbjct: 84  ADPSVHGILVQLPLPKHIDENKILNAIDPEKDVD 117

Length = 117

>gnl|CDD|133451 cd05212, NAD_bind_m-THF_DH_Cyclohyd_like, NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

 Score =  103 bits (258), Expect = 1e-27
 Identities = 51/158 (32%), Positives = 72/158 (45%), Gaps = 25/158 (15%)

Query: 116 IPCTPKGC-------IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA 168
            PCTP           ELL + GV + GK  +V+GRS IVG P   LLQR  ATV     
Sbjct: 1   GPCTPLFVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDW 60

Query: 169 LTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMG 228
            T   +    +AD+V+  +     V   W+KPGA V++            S         
Sbjct: 61  KTIQLQSKVHDADVVVVGSPKPEKVPTEWIKPGATVINC-----------SPTK------ 103

Query: 229 DVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 266
            +  ++    AS+  P+ GGVG +TVAM + N + S +
Sbjct: 104 -LSGDDVKESASLYVPMTGGVGKLTVAMRMQNMVRSVR 140

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, mono-functional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express a monofunctional DH. M-THF DH, like other amino acid DH-like NAD(P)-binding domains, is a member of the Rossmann fold superfamily which includes glutamate, leucine, and phenylalanine DHs, m-THF DH, methylene-tetrahydromethanopterin DH, m-THF DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 140

>gnl|CDD|133447 cd01079, NAD_bind_m-THF_DH, NAD binding domain of methylene-tetrahydrofolate dehydrogenase

 Score = 65.5 bits (160), Expect = 7e-13
 Identities = 50/210 (23%), Positives = 72/210 (34%), Gaps = 59/210 (28%)

Query: 91  LEKDVDGFHPLNIGNLAMRGR----EPLF---IPCTPKGCIELL---------IRSGVEI 134
             KDV+G     I NL    R    E      +PCTP   +++L         +  G  +
Sbjct: 1   PHKDVEGLSHKYIFNLYHNIRFLDPENRKKSILPCTPLAIVKILEFLGIYNKILPYGNRL 60

Query: 135 MGKNAVVIGRSNIVGLPTSLLLQRHHATV-SI--------------------VHALTKNP 173
            GK   +I RS +VG P + LL    A V S+                    V       
Sbjct: 61  YGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMT 120

Query: 174 EQITSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCY 232
               S++D+VI      N  V    LK GA+ ++  +                       
Sbjct: 121 LDCLSQSDVVITGVPSPNYKVPTELLKDGAICINFASIKNFE------------------ 162

Query: 233 EEAMRLASVITPVPGGVGPMTVAMLLSNTL 262
                 AS+  P    +G +T+AMLL N L
Sbjct: 163 PSVKEKASIYVPS---IGKVTIAMLLRNLL 189

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional DHs from S. cerevisiae and certain bacteria. M-THF DH, like other amino acid DH-like NAD(P)-binding domains, is a member of the Rossmann fold superfamily which includes glutamate, leucine, and phenylalanine DHs, m-THF DH, methylene-tetrahydromethanopterin DH, m-THF DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 197

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	272
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	100.0
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	100.0
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	100.0
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	100.0
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
KOG4230	935	consensus C1-tetrahydrofolate synthase [Coenzyme t	100.0
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
KOG0089	309	consensus Methylenetetrahydrofolate dehydrogenase/	100.0
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	100.0
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	100.0
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	100.0
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	100.0
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	99.95
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	99.95
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	99.95
PF00763	117	THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cycloh	99.95
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	99.95
PRK12548	289	shikimate 5-dehydrogenase; Provisional	99.95
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	99.94
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	99.94
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	99.94
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	99.93
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	99.9
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	99.89
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.64
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.56
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	99.33
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	99.32
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	99.29
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.26
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	99.16
PRK13940	414	glutamyl-tRNA reductase; Provisional	99.15
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.14
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.99
PRK14982	340	acyl-ACP reductase; Provisional	98.93
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	98.92
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.91
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.82
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.79
PLN00203	519	glutamyl-tRNA reductase	98.76
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.69
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.67
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.65
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.64
PLN02494	477	adenosylhomocysteinase	98.52
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.5
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	98.5
PLN02928	347	oxidoreductase family protein	98.49
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.48
COG5322	351	Predicted dehydrogenase [General function predicti	98.43
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.37
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	98.35
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	98.27
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.25
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.21
PF08501	83	Shikimate_dh_N: Shikimate dehydrogenase substrate	98.21
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	98.2
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	98.16
PRK13243	333	glyoxylate reductase; Reviewed	98.16
PRK06932	314	glycerate dehydrogenase; Provisional	98.13
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	98.12
PRK06487	317	glycerate dehydrogenase; Provisional	98.12
PRK06436	303	glycerate dehydrogenase; Provisional	98.1
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	98.1
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	98.09
PRK07574	385	formate dehydrogenase; Provisional	98.08
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	98.05
PRK08291	330	ectoine utilization protein EutC; Validated	98.04
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	98.03
PRK12480	330	D-lactate dehydrogenase; Provisional	98.03
PLN02306	386	hydroxypyruvate reductase	97.99
PRK08605	332	D-lactate dehydrogenase; Validated	97.99
PRK08618	325	ornithine cyclodeaminase; Validated	97.97
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.94
PLN03139	386	formate dehydrogenase; Provisional	97.92
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	97.91
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	97.89
PRK12862	763	malic enzyme; Reviewed	97.86
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	97.84
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.83
PRK07340	304	ornithine cyclodeaminase; Validated	97.83
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	97.83
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.82
PRK06141	314	ornithine cyclodeaminase; Validated	97.82
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	97.79
COG0281	432	SfcA Malic enzyme [Energy production and conversio	97.77
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.76
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	97.72
PRK12861	764	malic enzyme; Reviewed	97.6
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.54
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	97.5
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.5
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.48
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.44
PRK06823	315	ornithine cyclodeaminase; Validated	97.4
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.4
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.36
PRK06407	301	ornithine cyclodeaminase; Provisional	97.34
PRK13403	335	ketol-acid reductoisomerase; Provisional	97.33
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	97.28
PRK14804	311	ornithine carbamoyltransferase; Provisional	97.27
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.26
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.25
PRK07589	346	ornithine cyclodeaminase; Validated	97.23
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.21
PLN02712	667	arogenate dehydrogenase	97.2
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	97.19
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	97.18
PRK06046	326	alanine dehydrogenase; Validated	97.17
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	97.14
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.13
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	97.12
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	97.11
PLN02256	304	arogenate dehydrogenase	97.1
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	97.09
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.09
PRK01713	334	ornithine carbamoyltransferase; Provisional	97.09
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.09
PRK13529	563	malate dehydrogenase; Provisional	97.07
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	97.06
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.03
PRK02102	331	ornithine carbamoyltransferase; Validated	97.02
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	97.02
PRK02255	338	putrescine carbamoyltransferase; Provisional	97.01
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	97.01
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.0
PRK04284	332	ornithine carbamoyltransferase; Provisional	96.98
PRK07417	279	arogenate dehydrogenase; Reviewed	96.93
PRK11891	429	aspartate carbamoyltransferase; Provisional	96.87
PLN02342	348	ornithine carbamoyltransferase	96.87
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	96.86
PLN02527	306	aspartate carbamoyltransferase	96.84
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.82
PRK14805	302	ornithine carbamoyltransferase; Provisional	96.81
PRK06545	359	prephenate dehydrogenase; Validated	96.81
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	96.79
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	96.78
PRK05479	330	ketol-acid reductoisomerase; Provisional	96.77
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	96.75
PRK08818	370	prephenate dehydrogenase; Provisional	96.73
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	96.73
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.73
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.71
PRK15059	292	tartronate semialdehyde reductase; Provisional	96.7
PRK00779	304	ornithine carbamoyltransferase; Provisional	96.69
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	96.68
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	96.68
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	96.66
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	96.66
PLN03129	581	NADP-dependent malic enzyme; Provisional	96.66
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.65
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.65
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.65
PTZ00317	559	NADP-dependent malic enzyme; Provisional	96.64
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.63
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.58
PRK08655	437	prephenate dehydrogenase; Provisional	96.58
PRK08192	338	aspartate carbamoyltransferase; Provisional	96.58
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	96.57
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.54
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	96.5
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	96.5
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	96.47
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	96.46
PRK06199	379	ornithine cyclodeaminase; Validated	96.46
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	96.43
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.42
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	96.4
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.4
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.4
PLN02688	266	pyrroline-5-carboxylate reductase	96.37
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	96.34
PRK06398	258	aldose dehydrogenase; Validated	96.32
PRK10637	457	cysG siroheme synthase; Provisional	96.3
PRK08507	275	prephenate dehydrogenase; Validated	96.29
PRK06949	258	short chain dehydrogenase; Provisional	96.29
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	96.28
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.28
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.27
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	96.26
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	96.25
PLN02586	360	probable cinnamyl alcohol dehydrogenase	96.24
PRK06523	260	short chain dehydrogenase; Provisional	96.21
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.2
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.18
PLN02477	410	glutamate dehydrogenase	96.17
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.17
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.14
PTZ00117	319	malate dehydrogenase; Provisional	96.12
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.11
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	96.09
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.09
PRK12367	245	short chain dehydrogenase; Provisional	96.08
PRK09072	263	short chain dehydrogenase; Provisional	96.07
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.05
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	96.05
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.04
PLN02712	667	arogenate dehydrogenase	96.02
PRK08223	287	hypothetical protein; Validated	96.02
PRK07523	255	gluconate 5-dehydrogenase; Provisional	96.01
PRK12828	239	short chain dehydrogenase; Provisional	96.0
PRK14031	444	glutamate dehydrogenase; Provisional	96.0
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.99
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.99
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.99
PRK08862	227	short chain dehydrogenase; Provisional	95.97
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.97
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.96
PRK05866	293	short chain dehydrogenase; Provisional	95.85
PLN02858	1378	fructose-bisphosphate aldolase	95.83
PRK06124	256	gluconate 5-dehydrogenase; Provisional	95.83
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.82
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.82
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.82
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.82
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.81
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	95.79
PRK07680	273	late competence protein ComER; Validated	95.78
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	95.78
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	95.78
PTZ00082	321	L-lactate dehydrogenase; Provisional	95.78
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.76
PRK08339	263	short chain dehydrogenase; Provisional	95.75
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	95.74
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	95.74
PRK06172	253	short chain dehydrogenase; Provisional	95.73
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	95.71
PRK08085	254	gluconate 5-dehydrogenase; Provisional	95.69
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.69
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	95.69
PRK07062	265	short chain dehydrogenase; Provisional	95.68
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	95.67
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.67
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.66
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.65
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.65
PRK06138	252	short chain dehydrogenase; Provisional	95.64
PRK08628	258	short chain dehydrogenase; Provisional	95.64
PRK07063	260	short chain dehydrogenase; Provisional	95.63
CHL00194	317	ycf39 Ycf39; Provisional	95.62
PRK05717	255	oxidoreductase; Validated	95.61
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	95.61
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	95.61
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	95.61
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.61
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	95.6
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	95.6
PRK05867	253	short chain dehydrogenase; Provisional	95.58
PRK12829	264	short chain dehydrogenase; Provisional	95.57
PRK08265	261	short chain dehydrogenase; Provisional	95.57
PRK06057	255	short chain dehydrogenase; Provisional	95.57
COG2910	211	Putative NADH-flavin reductase [General function p	95.56
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.55
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.55
PRK07890	258	short chain dehydrogenase; Provisional	95.54
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.53
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	95.51
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.5
PRK05225	487	ketol-acid reductoisomerase; Validated	95.49
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	95.48
PLN02514	357	cinnamyl-alcohol dehydrogenase	95.47
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	95.46
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.44
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.44
PRK08213	259	gluconate 5-dehydrogenase; Provisional	95.44
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	95.44
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	95.43
PRK07097	265	gluconate 5-dehydrogenase; Provisional	95.43
PRK08703	239	short chain dehydrogenase; Provisional	95.42
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	95.41
PLN02858	1378	fructose-bisphosphate aldolase	95.39
PRK06841	255	short chain dehydrogenase; Provisional	95.39
PRK07060	245	short chain dehydrogenase; Provisional	95.38
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.38
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	95.37
PRK06182	273	short chain dehydrogenase; Validated	95.36
PRK09186	256	flagellin modification protein A; Provisional	95.36
PRK09242	257	tropinone reductase; Provisional	95.36
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	95.32
PLN02178	375	cinnamyl-alcohol dehydrogenase	95.31
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.3
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.3
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.29
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	95.29
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	95.29
PRK05854	313	short chain dehydrogenase; Provisional	95.28
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	95.27
PRK05872	296	short chain dehydrogenase; Provisional	95.26
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	95.25
PRK06125	259	short chain dehydrogenase; Provisional	95.25
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	95.24
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	95.23
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	95.22
PRK07478	254	short chain dehydrogenase; Provisional	95.22
PRK06194	287	hypothetical protein; Provisional	95.21
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	95.2
PRK07035	252	short chain dehydrogenase; Provisional	95.19
PRK06196	315	oxidoreductase; Provisional	95.19
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.19
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	95.19
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.18
PRK08264	238	short chain dehydrogenase; Validated	95.18
PRK07825	273	short chain dehydrogenase; Provisional	95.17
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	95.16
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.15
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	95.14
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.14
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.13
PRK07774	250	short chain dehydrogenase; Provisional	95.13
PRK06500	249	short chain dehydrogenase; Provisional	95.12
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	95.12
PRK06223	307	malate dehydrogenase; Reviewed	95.11
PRK08589	272	short chain dehydrogenase; Validated	95.11
PRK07814	263	short chain dehydrogenase; Provisional	95.11
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	95.11
PRK07856	252	short chain dehydrogenase; Provisional	95.1
PRK06179	270	short chain dehydrogenase; Provisional	95.1
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	95.09
PRK05876	275	short chain dehydrogenase; Provisional	95.09
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	95.08
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	95.07
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	95.06
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	95.06
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	95.05
PRK09414	445	glutamate dehydrogenase; Provisional	95.05
PRK08277	278	D-mannonate oxidoreductase; Provisional	95.05
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.05
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	95.04
PRK07576	264	short chain dehydrogenase; Provisional	95.03
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.03
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	95.0
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.0
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.99
PRK07067	257	sorbitol dehydrogenase; Provisional	94.98
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	94.96
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	94.95
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	94.95
PLN02427	386	UDP-apiose/xylose synthase	94.92
PLN02896	353	cinnamyl-alcohol dehydrogenase	94.9
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	94.89
PRK08936	261	glucose-1-dehydrogenase; Provisional	94.88
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.88
PRK06114	254	short chain dehydrogenase; Provisional	94.88
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	94.87
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.86
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	94.85
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.85
PRK07326	237	short chain dehydrogenase; Provisional	94.84
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.84
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.84
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	94.84
PRK09291	257	short chain dehydrogenase; Provisional	94.82
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	94.82
PRK06139	330	short chain dehydrogenase; Provisional	94.81
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	94.8
PRK14030	445	glutamate dehydrogenase; Provisional	94.78
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	94.76
PRK05875	276	short chain dehydrogenase; Provisional	94.74
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.73
PRK12939	250	short chain dehydrogenase; Provisional	94.72
KOG0725	270	consensus Reductases with broad range of substrate	94.71
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	94.7
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	94.7
KOG0409	327	consensus Predicted dehydrogenase [General functio	94.69
PLN02695	370	GDP-D-mannose-3',5'-epimerase	94.69
PRK12743	256	oxidoreductase; Provisional	94.68
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.67
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	94.67
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	94.65
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	94.64
PLN02214	342	cinnamoyl-CoA reductase	94.64
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	94.62
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.61
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	94.61
PLN02383	344	aspartate semialdehyde dehydrogenase	94.6
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	94.58
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	94.56
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	94.55
PRK06197	306	short chain dehydrogenase; Provisional	94.54
PLN03209	576	translocon at the inner envelope of chloroplast su	94.54
PLN02253	280	xanthoxin dehydrogenase	94.53
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	94.53
PRK12742	237	oxidoreductase; Provisional	94.51
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	94.5
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	94.5
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	94.49
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	94.49
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	94.45
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	94.45
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	94.45
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	94.44
PRK06198	260	short chain dehydrogenase; Provisional	94.41
PRK06914	280	short chain dehydrogenase; Provisional	94.4
PRK05086	312	malate dehydrogenase; Provisional	94.39
PRK08278	273	short chain dehydrogenase; Provisional	94.39
PRK07806	248	short chain dehydrogenase; Provisional	94.39
PLN02778	298	3,5-epimerase/4-reductase	94.39
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	94.37
PRK07411	390	hypothetical protein; Validated	94.36
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	94.36
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	94.35
PRK08643	256	acetoin reductase; Validated	94.34
PRK08226	263	short chain dehydrogenase; Provisional	94.34
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	94.33
PRK12827	249	short chain dehydrogenase; Provisional	94.28
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.28
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	94.26
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	94.23
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	94.23
PRK07677	252	short chain dehydrogenase; Provisional	94.23
PRK09135	249	pteridine reductase; Provisional	94.22
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	94.2
PLN00106	323	malate dehydrogenase	94.2
PRK07109	334	short chain dehydrogenase; Provisional	94.19
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.19
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	94.19
PRK12937	245	short chain dehydrogenase; Provisional	94.18
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	94.17
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	94.16
PRK05993	277	short chain dehydrogenase; Provisional	94.16
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	94.16
PRK07577	234	short chain dehydrogenase; Provisional	94.16
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	94.15
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	94.15
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	94.13
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	94.12
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	94.12
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.09
PRK06153	393	hypothetical protein; Provisional	94.08
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	94.06
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	94.05
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	94.05
PRK06701	290	short chain dehydrogenase; Provisional	94.04
PRK08267	260	short chain dehydrogenase; Provisional	94.04
PLN02653	340	GDP-mannose 4,6-dehydratase	94.02
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	94.01
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	93.99
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	93.97
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	93.95
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	93.94
PRK06720	169	hypothetical protein; Provisional	93.94
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	93.92
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	93.92
PRK07985	294	oxidoreductase; Provisional	93.92
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.91
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	93.87
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	93.87
PRK12779	944	putative bifunctional glutamate synthase subunit b	93.86
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	93.84
PRK06444	197	prephenate dehydrogenase; Provisional	93.84
PRK08303	305	short chain dehydrogenase; Provisional	93.83
PRK06180	277	short chain dehydrogenase; Provisional	93.82
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	93.81
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	93.81
PLN02602	350	lactate dehydrogenase	93.77
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	93.74
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	93.73
PRK06483	236	dihydromonapterin reductase; Provisional	93.73
PRK07831	262	short chain dehydrogenase; Provisional	93.72
PLN02206	442	UDP-glucuronate decarboxylase	93.7
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	93.68
PRK12744	257	short chain dehydrogenase; Provisional	93.67
PRK07454	241	short chain dehydrogenase; Provisional	93.65
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	93.64
PRK12746	254	short chain dehydrogenase; Provisional	93.64
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.6
PRK07791	286	short chain dehydrogenase; Provisional	93.58
PRK06128	300	oxidoreductase; Provisional	93.55
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	93.55
PRK07453	322	protochlorophyllide oxidoreductase; Validated	93.5
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	93.49
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	93.48

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=100.00  E-value=5.5e-84  Score=581.69  Aligned_cols=259  Identities=54%  Similarity=0.848  Sum_probs=250.8

Q ss_pred             CCCCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCC
Q 024116            2 KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLD   81 (272)
Q Consensus         2 ~~~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~   81 (272)
                      +++.+++|+||+|++|+||+|..|+++|.|+|+++|+.++.+.||++++++||++.|++||+|++||||+||+|||+|+|
T Consensus        24 ~~~~~~~P~LavilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld  103 (283)
T COG0190          24 KAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPKHLD  103 (283)
T ss_pred             HhccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCC
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC
Q 024116           82 EGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA  161 (272)
Q Consensus        82 ~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga  161 (272)
                      +++++++|+|+|||||||++|.|+|..+  ++.|+||||.|++++|++|+++++||+++|||||.+||||++++|++.||
T Consensus       104 ~~~il~~I~p~KDVDG~hp~N~g~L~~~--~~~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~na  181 (283)
T COG0190         104 EQKLLQAIDPEKDVDGFHPYNLGKLAQG--EPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANA  181 (283)
T ss_pred             HHHHHhhcCcCCCccccChhHhcchhcC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCC
Confidence            9999999999999999999999999865  77899999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceE
Q 024116          162 TVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASV  241 (272)
Q Consensus       162 ~V~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~  241 (272)
                      |||+||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+++.+         .+|++|||||+++.+++++
T Consensus       182 TVtvcHs~T~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~gavVIDVGinrv~---------~~kl~GDVdf~~v~~~a~~  252 (283)
T COG0190         182 TVTVCHSRTKDLASITKNADIVVVAVGKPHFIKADMVKPGAVVIDVGINRVN---------DGKLVGDVDFDSVKEKASA  252 (283)
T ss_pred             EEEEEcCCCCCHHHHhhhCCEEEEecCCccccccccccCCCEEEecCCcccc---------CCceEeeccHHHHHHhhcc
Confidence            9999999999999999999999999999999999999999999999999986         2689999999999999999


Q ss_pred             eccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          242 ITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       242 ~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                      +|||||||||||++|||+|++++++++.+.
T Consensus       253 iTPVPGGVGPmTvamLl~Nt~~a~~~~~~~  282 (283)
T COG0190         253 ITPVPGGVGPMTVAMLLENTLKAAERQRGE  282 (283)
T ss_pred             cCCCCCccCHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999988764

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=5.2e-83  Score=581.34  Aligned_cols=256  Identities=43%  Similarity=0.746  Sum_probs=246.9

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHH
Q 024116            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (272)
Q Consensus         4 ~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~   83 (272)
                      +.|++|+||+|++|+||+|..|++.|.|+|+++||+++.++||++++|+||++.|++||+|++||||+||+|||+|+++.
T Consensus        28 ~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~  107 (288)
T PRK14171         28 QTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKN  107 (288)
T ss_pred             ccCCCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHH
Confidence            34889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024116           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (272)
Q Consensus        84 ~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V  163 (272)
                      +++++|+|+|||||+|+.|.|+++.|. .++|+||||.|++++|++|+++++||+|+|||||..||||++++|.++||||
T Consensus       108 ~i~~~I~p~KDVDGl~~~N~g~l~~g~-~~~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATV  186 (288)
T PRK14171        108 KILSAVSPSKDIDGFHPLNVGYLHSGI-SQGFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSV  186 (288)
T ss_pred             HHHhccCcccccccCCccchhhhhcCC-CCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEE
Confidence            999999999999999999999999763 4789999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEec
Q 024116          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT  243 (272)
Q Consensus       164 ~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~t  243 (272)
                      |+||++|++|++++++|||||+|+|+|++++++|+|+|++|||+|+|+.+         ++|++|||||+++.++++++|
T Consensus       187 tichs~T~~L~~~~~~ADIvV~AvGkp~~i~~~~vk~GavVIDvGin~~~---------~gkl~GDVd~~~v~~~a~~iT  257 (288)
T PRK14171        187 TICHSKTHNLSSITSKADIVVAAIGSPLKLTAEYFNPESIVIDVGINRIS---------GNKIIGDVDFENVKSKVKYIT  257 (288)
T ss_pred             EEeCCCCCCHHHHHhhCCEEEEccCCCCccCHHHcCCCCEEEEeeccccC---------CCCeECCccHHHHHhhceEeC
Confidence            99999999999999999999999999999999999999999999999864         268999999999999999999


Q ss_pred             cCCCcccHHHHHHHHHHHHHHHHHHh
Q 024116          244 PVPGGVGPMTVAMLLSNTLDSAKRAY  269 (272)
Q Consensus       244 pvpGGvGp~T~amL~~n~v~a~~~~~  269 (272)
                      ||||||||+|++|||+|+++++++.+
T Consensus       258 PVPGGVGp~T~a~L~~N~v~a~~~~~  283 (288)
T PRK14171        258 PVPGGIGPMTIAFLLKNTVKAFKDSL  283 (288)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998654

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=100.00  E-value=3.8e-83  Score=591.95  Aligned_cols=265  Identities=78%  Similarity=1.269  Sum_probs=250.6

Q ss_pred             CCCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCH
Q 024116            3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDE   82 (272)
Q Consensus         3 ~~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~   82 (272)
                      ++.|++|+||+|+||+||+|..|++.|.|+|+++||+++.++||++++|+||++.|++||+|++||||+||+|||+|+++
T Consensus        81 ~~~g~~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D~~V~GIlVQlPLP~hid~  160 (345)
T PLN02897         81 KAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDE  160 (345)
T ss_pred             hccCCCCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCH
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE
Q 024116           83 GKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT  162 (272)
Q Consensus        83 ~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~  162 (272)
                      ++++++|+|+|||||+|+.|.|+|+.+++.++|+||||.|++++|++|+++++||+|+|||||.+||+|++++|+++||+
T Consensus       161 ~~i~~~I~p~KDVDGl~p~N~G~L~~~~~~~~~~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~AT  240 (345)
T PLN02897        161 SKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDAT  240 (345)
T ss_pred             HHHHhccCcccCccCCCHHHHHHHhcCCCCCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCE
Confidence            99999999999999999999999987544478999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEe
Q 024116          163 VSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVI  242 (272)
Q Consensus       163 V~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~  242 (272)
                      ||+||++|+++++++++|||||+|+|+|++++++|||+|++|||+|+++.+   +++++.+.+++|||||+++.++++++
T Consensus       241 VTicHs~T~nl~~~~~~ADIvIsAvGkp~~v~~d~vk~GavVIDVGin~~~---~~~~~~g~klvGDVdfe~v~~~as~i  317 (345)
T PLN02897        241 VSTVHAFTKDPEQITRKADIVIAAAGIPNLVRGSWLKPGAVVIDVGTTPVE---DSSCEFGYRLVGDVCYEEALGVASAI  317 (345)
T ss_pred             EEEEcCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEccccccc---cccccCCCeeEecccHHHHHhhcccc
Confidence            999999999999999999999999999999999999999999999999964   22211123899999999999999999


Q ss_pred             ccCCCcccHHHHHHHHHHHHHHHHHHhC
Q 024116          243 TPVPGGVGPMTVAMLLSNTLDSAKRAYG  270 (272)
Q Consensus       243 tpvpGGvGp~T~amL~~n~v~a~~~~~~  270 (272)
                      |||||||||+|++|||+|+++++++|+.
T Consensus       318 TPVPGGVGpmTvamLm~N~~~a~~~~~~  345 (345)
T PLN02897        318 TPVPGGVGPMTITMLLCNTLDAAKRIFL  345 (345)
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999974

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=100.00  E-value=6.4e-83  Score=592.69  Aligned_cols=266  Identities=71%  Similarity=1.145  Sum_probs=251.4

Q ss_pred             CCCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCH
Q 024116            3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDE   82 (272)
Q Consensus         3 ~~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~   82 (272)
                      ++.|++|+||+|+||+||+|..|++.|.|+|+++||+++.++||++++|+|+++.|++||+|++||||+||+|||+|+++
T Consensus        98 ~~~g~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~D~~V~GIlVQlPLP~~id~  177 (364)
T PLN02616         98 ESIGVVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMDE  177 (364)
T ss_pred             HcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCH
Confidence            44588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE
Q 024116           83 GKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT  162 (272)
Q Consensus        83 ~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~  162 (272)
                      .+++++|+|+|||||+|+.|.|+|+.++..++|+||||.|++++|++|+++++||+|+|||||.+||||++++|.++||+
T Consensus       178 ~~i~~aI~P~KDVDGl~p~N~G~L~~g~~~~~f~PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~AT  257 (364)
T PLN02616        178 QNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDAT  257 (364)
T ss_pred             HHHHhccCcccCcccCChhhhHHHhcCCCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCe
Confidence            99999999999999999999999997643578999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEe
Q 024116          163 VSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVI  242 (272)
Q Consensus       163 V~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~  242 (272)
                      ||+||++|+++++++++|||||+|+|+|++++++|||+|++|||+|+++.+   ++.++.+.|++|||||+++.+++++|
T Consensus       258 VTicHs~T~nl~~~~r~ADIVIsAvGkp~~i~~d~vK~GAvVIDVGIn~~~---~~~~~~g~klvGDVdfe~v~~~as~I  334 (364)
T PLN02616        258 VSIVHSRTKNPEEITREADIIISAVGQPNMVRGSWIKPGAVVIDVGINPVE---DASSPRGYRLVGDVCYEEACKVASAV  334 (364)
T ss_pred             EEEeCCCCCCHHHHHhhCCEEEEcCCCcCcCCHHHcCCCCEEEeccccccc---cccccCCCeEEecCcHHHHHhhcccc
Confidence            999999999999999999999999999999999999999999999999964   21111122899999999999999999


Q ss_pred             ccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          243 TPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       243 tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                      |||||||||+|++|||+|++++++++.+.
T Consensus       335 TPVPGGVGpmTva~Ll~N~~~aa~~~~~~  363 (364)
T PLN02616        335 TPVPGGVGPMTIAMLLSNTLTSAKRIHNF  363 (364)
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999998765

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=8.1e-83  Score=579.07  Aligned_cols=256  Identities=52%  Similarity=0.891  Sum_probs=248.1

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHH
Q 024116            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (272)
Q Consensus         5 ~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~   84 (272)
                      .|++|+|++|++|+||+|..|++.|.|+|+++||+++.++||++++|+|+++.|++||+|++||||+||+|||+|+++++
T Consensus        28 ~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~  107 (284)
T PRK14170         28 EGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEK  107 (284)
T ss_pred             CCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE
Q 024116           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS  164 (272)
Q Consensus        85 i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~  164 (272)
                      ++++|+|+|||||+|+.|.|+|+.+  .++|+||||.|++++|++|+++++||+|+|||||.+||||++++|.++||+||
T Consensus       108 i~~~I~p~KDVDGl~p~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt  185 (284)
T PRK14170        108 VIDTISYDKDVDGFHPVNVGNLFIG--KDSFVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVT  185 (284)
T ss_pred             HHhccCcccCcccCChhhhhHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence            9999999999999999999999976  56799999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEecc
Q 024116          165 IVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITP  244 (272)
Q Consensus       165 v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tp  244 (272)
                      +||++|+++++++++|||||+|+|+|++++++|+|+|++|||+|+++.+         +++++|||||+++.++++++||
T Consensus       186 ichs~T~~l~~~~~~ADIvI~AvG~~~~i~~~~vk~GavVIDvGin~~~---------~gkl~GDvdfe~~~~~a~~iTP  256 (284)
T PRK14170        186 IAHSRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAIVIDVGMDRDE---------NNKLCGDVDFDDVVEEAGFITP  256 (284)
T ss_pred             EeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEccCcccC---------CCCeecccchHHHHhhccEecC
Confidence            9999999999999999999999999999999999999999999999864         2689999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          245 VPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       245 vpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                      |||||||+|++|||+|+++++++++..
T Consensus       257 VPGGVGpvT~a~L~~N~~~a~~~~~~~  283 (284)
T PRK14170        257 VPGGVGPMTITMLLANTLKAAKRIWKM  283 (284)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999988753

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2.5e-82  Score=579.54  Aligned_cols=266  Identities=50%  Similarity=0.816  Sum_probs=250.5

Q ss_pred             CCCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCH
Q 024116            3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDE   82 (272)
Q Consensus         3 ~~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~   82 (272)
                      ++.|++|+|++|++|+||+|..|++.|.|+|+++||+++.++||++++|+|+++.|++||+|++||||+||+|||+|+++
T Consensus        28 ~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~  107 (297)
T PRK14168         28 EKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLPKHINE  107 (297)
T ss_pred             HcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCH
Confidence            34589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhC---
Q 024116           83 GKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH---  159 (272)
Q Consensus        83 ~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~---  159 (272)
                      ++++++|+|+|||||+|+.|+|+|+.|+..++|+||||.|++++|++|+++++||+|+|||||..||||++++|.++   
T Consensus       108 ~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~  187 (297)
T PRK14168        108 KKVLNAIDPDKDVDGFHPVNVGRLMIGGDEVKFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPG  187 (297)
T ss_pred             HHHHhccCccccccccChhhHHHHhcCCCCCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccC
Confidence            99999999999999999999999998754478999999999999999999999999999999999999999999998   


Q ss_pred             -CCEEEEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhh
Q 024116          160 -HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRL  238 (272)
Q Consensus       160 -ga~V~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~  238 (272)
                       ||+||+||++|+++++++++|||||+|+|+|++++++|+|+|++|||+|+++..   +..+.++.+++|||||+++.++
T Consensus       188 ~~atVtv~hs~T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~gavVIDvGin~~~---~~~~~g~~~~~GDVdfe~v~~~  264 (297)
T PRK14168        188 ANATVTIVHTRSKNLARHCQRADILIVAAGVPNLVKPEWIKPGATVIDVGVNRVG---TNESTGKAILSGDVDFDAVKEI  264 (297)
T ss_pred             CCCEEEEecCCCcCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEecCCCccC---ccccCCCcceeccccHHHHHhh
Confidence             799999999999999999999999999999999999999999999999999853   1111111249999999999999


Q ss_pred             ceEeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          239 ASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       239 ~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                      ++++|||||||||+|++|||+|+++++++|+++
T Consensus       265 a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~~~  297 (297)
T PRK14168        265 AGKITPVPGGVGPMTIAMLMRNTLKSAKFHLSL  297 (297)
T ss_pred             ccEecCCCCCchHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999985

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2.4e-82  Score=578.43  Aligned_cols=261  Identities=44%  Similarity=0.731  Sum_probs=248.0

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHH
Q 024116            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (272)
Q Consensus         4 ~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~   83 (272)
                      +.|++|+||+|++|+||+|..|+++|.|+|+++||+++.++||++++|+|+++.|++||+|++||||+||+|||+|++++
T Consensus        28 ~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~  107 (294)
T PRK14187         28 QHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPNHIDKN  107 (294)
T ss_pred             ccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHH
Confidence            34889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024116           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (272)
Q Consensus        84 ~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V  163 (272)
                      +++++|+|+|||||+|+.|.|+|+.|+..++|+||||.|++++|++|+++++||+|+|||||..||+|++++|+++||||
T Consensus       108 ~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTV  187 (294)
T PRK14187        108 LIINTIDPEKDVDGFHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTV  187 (294)
T ss_pred             HHHhccCcccCcccCChhhHHHHhCCCCCCCccCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEE
Confidence            99999999999999999999999987534689999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEec
Q 024116          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT  243 (272)
Q Consensus       164 ~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~t  243 (272)
                      |+||++|+++++++++|||||+|+|+|++++++||++|++|||+|+++.+   +..   ..+++|||||+++.++++++|
T Consensus       188 t~chs~T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~gaiVIDVGin~~~---~~~---~~kl~GDvd~e~v~~~a~~iT  261 (294)
T PRK14187        188 TTVHSATRDLADYCSKADILVAAVGIPNFVKYSWIKKGAIVIDVGINSIE---EGG---VKKFVGDVDFAEVKKKASAIT  261 (294)
T ss_pred             EEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecccccC---CCC---ccceeCCccHHHHhhhccEec
Confidence            99999999999999999999999999999999999999999999999964   100   028999999999999999999


Q ss_pred             cCCCcccHHHHHHHHHHHHHHHHHHhC
Q 024116          244 PVPGGVGPMTVAMLLSNTLDSAKRAYG  270 (272)
Q Consensus       244 pvpGGvGp~T~amL~~n~v~a~~~~~~  270 (272)
                      ||||||||+|++|||+|++++++++.+
T Consensus       262 PVPGGVGp~T~a~L~~N~~~a~~~~~~  288 (294)
T PRK14187        262 PVPGGVGPMTIAFLMVNTVIAACNQKG  288 (294)
T ss_pred             CCCCCChHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999987653

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=3.2e-82  Score=575.14  Aligned_cols=255  Identities=49%  Similarity=0.785  Sum_probs=246.2

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHH
Q 024116            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (272)
Q Consensus         5 ~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~   84 (272)
                      .|++|+||+|++|+||+|..|++.|.|.|+++||+++.++||++++|+||++.|++||+|++||||+||+|||+|+++++
T Consensus        27 ~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~  106 (282)
T PRK14166         27 KGIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDL  106 (282)
T ss_pred             CCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE
Q 024116           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS  164 (272)
Q Consensus        85 i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~  164 (272)
                      ++++|+|+|||||+|+.|+|+|+.|. .++|+||||+|++++|++|+++++||+|+|||||..||||++++|.++||+||
T Consensus       107 i~~~I~p~KDVDGl~~~N~g~l~~g~-~~~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt  185 (282)
T PRK14166        107 ILESIISSKDVDGFHPINVGYLNLGL-ESGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVS  185 (282)
T ss_pred             HHhccCcccCcccCChhhhHHHhcCC-CCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence            99999999999999999999999763 46799999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEecc
Q 024116          165 IVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITP  244 (272)
Q Consensus       165 v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tp  244 (272)
                      +||++|+++++++++|||||+|+|+|++++++||++|++|||+|+++..         +++++|||||+++.++++++||
T Consensus       186 ~chs~T~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDvGin~~~---------~gkl~GDVd~~~v~~~a~~iTP  256 (282)
T PRK14166        186 VCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLE---------SGKIVGDVDFEEVSKKSSYITP  256 (282)
T ss_pred             EeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEecccccC---------CCCeeCCCCHHHHHhhccEecC
Confidence            9999999999999999999999999999999999999999999999863         2589999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHHHHHHh
Q 024116          245 VPGGVGPMTVAMLLSNTLDSAKRAY  269 (272)
Q Consensus       245 vpGGvGp~T~amL~~n~v~a~~~~~  269 (272)
                      |||||||+|++|||+|+++++++..
T Consensus       257 VPGGVGp~T~a~L~~N~v~a~~~~~  281 (282)
T PRK14166        257 VPGGVGPMTIAMLLENTVKSAKNRL  281 (282)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999998754

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=3.5e-82  Score=574.90  Aligned_cols=254  Identities=44%  Similarity=0.729  Sum_probs=246.3

Q ss_pred             CCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHH
Q 024116            6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKI   85 (272)
Q Consensus         6 ~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i   85 (272)
                      |++|+||+|++|+||+|..|++.|.|+|+++||+++.++||++++|+||++.|++||+|++||||+||+|||+|++++++
T Consensus        28 g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i  107 (282)
T PRK14169         28 DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAV  107 (282)
T ss_pred             CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEE
Q 024116           86 LDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSI  165 (272)
Q Consensus        86 ~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v  165 (272)
                      +++|+|+|||||+|+.|+|+|+.+  .++|+||||+|++++|++|+++++||+|+|||||..||||++++|.++||+||+
T Consensus       108 ~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVti  185 (282)
T PRK14169        108 IDAIDPDKDVDGFSPVSVGRLWAN--EPTVVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTI  185 (282)
T ss_pred             HhhcCcccCcccCChhhhHHHhcC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEE
Confidence            999999999999999999999976  578999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEeccC
Q 024116          166 VHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPV  245 (272)
Q Consensus       166 ~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpv  245 (272)
                      ||++|+++++++++|||||+|+|+|++++++|+|+|++|||+|+++..         +++++|||||+++.++++++|||
T Consensus       186 chs~T~~l~~~~~~ADIvI~AvG~p~~i~~~~vk~GavVIDvGin~~~---------~gkl~GDVd~~~v~~~a~~iTPV  256 (282)
T PRK14169        186 AHSKTRNLKQLTKEADILVVAVGVPHFIGADAVKPGAVVIDVGISRGA---------DGKLLGDVDEAAVAPIASAITPV  256 (282)
T ss_pred             ECCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCcEEEEeeccccC---------CCCeeecCcHHHHHhhccEecCC
Confidence            999999999999999999999999999999999999999999999853         25899999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHhC
Q 024116          246 PGGVGPMTVAMLLSNTLDSAKRAYG  270 (272)
Q Consensus       246 pGGvGp~T~amL~~n~v~a~~~~~~  270 (272)
                      ||||||+|++|||+|+++++++..+
T Consensus       257 PGGVGp~T~a~L~~N~~~a~~~~~~  281 (282)
T PRK14169        257 PGGVGPMTIASLMAQTVTLAKRRAN  281 (282)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999987643

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=100.00  E-value=4e-82  Score=578.20  Aligned_cols=265  Identities=63%  Similarity=1.052  Sum_probs=250.1

Q ss_pred             CCCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCH
Q 024116            3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDE   82 (272)
Q Consensus         3 ~~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~   82 (272)
                      ++.|++|+|++|++|+||+|..|++.|.|+|+++||+++.++||++++++|+++.|++||+|++||||+||+|||+|+++
T Consensus        34 ~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~  113 (299)
T PLN02516         34 EKHGKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPKHINE  113 (299)
T ss_pred             HcCCCCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCH
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE
Q 024116           83 GKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT  162 (272)
Q Consensus        83 ~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~  162 (272)
                      ++++++|+|+|||||+|+.|+|+|+.++..++|+||||.|++++|++|+++++||+|+|||||.+||||++++|.++|||
T Consensus       114 ~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~AT  193 (299)
T PLN02516        114 EKILNEISLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADAT  193 (299)
T ss_pred             HHHHhccCcccccCccCHhhHhhHhcCCCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCE
Confidence            99999999999999999999999987643578999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEe
Q 024116          163 VSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVI  242 (272)
Q Consensus       163 V~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~  242 (272)
                      ||+||++|+++++++++|||||+|+|+|++++++|||+|++|||+|+++.+   ++....+.+++|||||+++.++++++
T Consensus       194 Vtvchs~T~nl~~~~~~ADIvv~AvGk~~~i~~~~vk~gavVIDvGin~~~---~~~~~~g~kl~GDvd~e~v~~~a~~i  270 (299)
T PLN02516        194 VTVVHSRTPDPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGTNAVS---DPSKKSGYRLVGDVDFAEVSKVAGWI  270 (299)
T ss_pred             EEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEeeccccC---cccccCCCceEcCcChHHhhhhceEe
Confidence            999999999999999999999999999999999999999999999999864   21111123899999999999999999


Q ss_pred             ccCCCcccHHHHHHHHHHHHHHHHHHhC
Q 024116          243 TPVPGGVGPMTVAMLLSNTLDSAKRAYG  270 (272)
Q Consensus       243 tpvpGGvGp~T~amL~~n~v~a~~~~~~  270 (272)
                      |||||||||+|++|||+|+++++++|+.
T Consensus       271 TPVPGGVGp~T~a~L~~N~v~a~~~~~~  298 (299)
T PLN02516        271 TPVPGGVGPMTVAMLLKNTVDGAKRVFA  298 (299)
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999974

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=4.3e-82  Score=573.84  Aligned_cols=254  Identities=49%  Similarity=0.774  Sum_probs=246.0

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHH
Q 024116            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (272)
Q Consensus         5 ~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~   84 (272)
                      .|++|+||+|++|+||+|..|++.|.|+|+++||+++.++||++++|+|+++.|++||+|++||||+||+|||+|+++.+
T Consensus        27 ~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~  106 (282)
T PRK14182         27 RGVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPKHVDERA  106 (282)
T ss_pred             CCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcccccCccccccccccccCCCCCc-cccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024116           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPL-FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (272)
Q Consensus        85 i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~-~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V  163 (272)
                      ++++|+|+|||||+|+.|+|+|+.|  ..+ |+||||.|++++|++|+++++||+|+|||||..||+|+++||.++||+|
T Consensus       107 i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtV  184 (282)
T PRK14182        107 VLDAISPAKDADGFHPFNVGALSIG--IAGVPRPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATV  184 (282)
T ss_pred             HHhccCcccCcCCCCHhHHHHHhCC--CCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEE
Confidence            9999999999999999999999977  344 8999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEec
Q 024116          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT  243 (272)
Q Consensus       164 ~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~t  243 (272)
                      |+||++|+++++++++|||||+|+|+|++++++|+|+|++|||+|+++..         +++++|||||+++.++++++|
T Consensus       185 tichs~T~nl~~~~~~ADIvI~AvGk~~~i~~~~ik~gaiVIDvGin~~~---------~gkl~GDVd~~~v~~~a~~iT  255 (282)
T PRK14182        185 TIAHSRTADLAGEVGRADILVAAIGKAELVKGAWVKEGAVVIDVGMNRLA---------DGKLVGDVEFAAAAARASAIT  255 (282)
T ss_pred             EEeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEeeceecC---------CCCeeCCCCHHHHHhhccEec
Confidence            99999999999999999999999999999999999999999999999863         258999999999999999999


Q ss_pred             cCCCcccHHHHHHHHHHHHHHHHHHh
Q 024116          244 PVPGGVGPMTVAMLLSNTLDSAKRAY  269 (272)
Q Consensus       244 pvpGGvGp~T~amL~~n~v~a~~~~~  269 (272)
                      ||||||||+|++|||+|+++++++|-
T Consensus       256 PVPGGVGp~T~a~L~~N~~~~~~~~~  281 (282)
T PRK14182        256 PVPGGVGPMTRAMLLVNTVELAKRTA  281 (282)
T ss_pred             CCCCCChHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999884

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=7e-82  Score=575.15  Aligned_cols=260  Identities=47%  Similarity=0.779  Sum_probs=246.6

Q ss_pred             CCCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCH
Q 024116            3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDE   82 (272)
Q Consensus         3 ~~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~   82 (272)
                      ++.|++|+||+|++|+||+|..|++.|.|+|+++||+++.++||++++|+|+++.|++||+|++||||+||+|||+|+++
T Consensus        26 ~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~  105 (293)
T PRK14185         26 AKGGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISE  105 (293)
T ss_pred             hccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCH
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhC---
Q 024116           83 GKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH---  159 (272)
Q Consensus        83 ~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~---  159 (272)
                      ++++++|+|+|||||+|+.|.|+|+.+  .++|+||||+|++++|++|+++++||+|+|||||.+||||++++|.++   
T Consensus       106 ~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~  183 (293)
T PRK14185        106 QKVIEAIDYRKDVDGFHPINVGRMSIG--LPCFVSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYP  183 (293)
T ss_pred             HHHHhccCcccCcCCCCHhhHHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCC
Confidence            999999999999999999999999976  578999999999999999999999999999999999999999999998   


Q ss_pred             -CCEEEEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCc-eEecccchhhhhh
Q 024116          160 -HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY-RLMGDVCYEEAMR  237 (272)
Q Consensus       160 -ga~V~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~-k~~Gdvd~~~~~~  237 (272)
                       +||||+||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+++.+   ++. .+.+ +++|||||+++.+
T Consensus       184 ~~aTVtvchs~T~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~gavVIDvGin~~~---~~~-~~~g~klvGDVdf~~v~~  259 (293)
T PRK14185        184 GDCTVTVCHSRSKNLKKECLEADIIIAALGQPEFVKADMVKEGAVVIDVGTTRVP---DAT-RKSGFKLTGDVKFDEVAP  259 (293)
T ss_pred             CCCEEEEecCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecCcccc---ccc-ccCCCeeEcCCCHHHHHh
Confidence             799999999999999999999999999999999999999999999999999864   211 1124 8999999999999


Q ss_pred             hceEeccCCCcccHHHHHHHHHHHHHHHHHH
Q 024116          238 LASVITPVPGGVGPMTVAMLLSNTLDSAKRA  268 (272)
Q Consensus       238 ~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~  268 (272)
                      +++++|||||||||+|++|||+|+++++++.
T Consensus       260 ~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~  290 (293)
T PRK14185        260 KCSYITPVPGGVGPMTIVSLMKNTLLAGKKA  290 (293)
T ss_pred             hccEeCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998754

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.3e-81  Score=572.20  Aligned_cols=254  Identities=52%  Similarity=0.835  Sum_probs=247.4

Q ss_pred             CCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHH
Q 024116            6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKI   85 (272)
Q Consensus         6 ~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i   85 (272)
                      |++|+||+|++|+||+|..|++.|.|+|+++||+++.++||++++|+||++.|++||+|++||||+||+|||+|++++++
T Consensus        30 g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i  109 (284)
T PRK14190         30 GIVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAV  109 (284)
T ss_pred             CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEE
Q 024116           86 LDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSI  165 (272)
Q Consensus        86 ~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v  165 (272)
                      +++|+|+|||||+|+.|.|+++.|  .++|+||||.|++++|++|+++++||+|+|||||..||||++++|+++||+||+
T Consensus       110 ~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~  187 (284)
T PRK14190        110 IERISPEKDVDGFHPINVGRMMLG--QDTFLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTY  187 (284)
T ss_pred             HhcCCccccccccCHhhHHHHhcC--CCCCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEE
Confidence            999999999999999999999976  578999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEeccC
Q 024116          166 VHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPV  245 (272)
Q Consensus       166 ~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpv  245 (272)
                      ||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+++.+         ++|++|||||+++.++++++|||
T Consensus       188 chs~t~~l~~~~~~ADIvI~AvG~p~~i~~~~ik~gavVIDvGi~~~~---------~gkl~GDvd~e~v~~~a~~iTPV  258 (284)
T PRK14190        188 CHSKTKNLAELTKQADILIVAVGKPKLITADMVKEGAVVIDVGVNRLE---------NGKLCGDVDFDNVKEKASYITPV  258 (284)
T ss_pred             EeCCchhHHHHHHhCCEEEEecCCCCcCCHHHcCCCCEEEEeeccccC---------CCCeeccCcHHHHhhhceEecCC
Confidence            999999999999999999999999999999999999999999999864         25899999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHhC
Q 024116          246 PGGVGPMTVAMLLSNTLDSAKRAYG  270 (272)
Q Consensus       246 pGGvGp~T~amL~~n~v~a~~~~~~  270 (272)
                      ||||||+|++|||+|+++++++|.+
T Consensus       259 PGGVGpvT~a~L~~N~~~a~~~~~~  283 (284)
T PRK14190        259 PGGVGPMTITMLMHNTVELAKRAGG  283 (284)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999875

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.2e-81  Score=571.47  Aligned_cols=255  Identities=44%  Similarity=0.709  Sum_probs=246.6

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHH
Q 024116            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (272)
Q Consensus         4 ~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~   83 (272)
                      +.|++|+||+|++|+||+|..|+++|.|+|+++||+++.++||++++++|+++.|++||+|++||||+||+|||+|+++.
T Consensus        27 ~~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~  106 (282)
T PRK14180         27 HTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKN  106 (282)
T ss_pred             ccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHH
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024116           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (272)
Q Consensus        84 ~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V  163 (272)
                      +++++|+|+|||||+|+.|.|+++.|+ ..+|+||||+|++++|++|+++++||+|+|||||..||+|++++|.++||||
T Consensus       107 ~i~~~I~p~KDVDGl~~~n~g~l~~g~-~~~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATV  185 (282)
T PRK14180        107 NVIYSIKPEKDVDGFHPTNVGRLQLRD-KKCLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATV  185 (282)
T ss_pred             HHHhhcCccccccccChhhHHHHhcCC-CCCcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEE
Confidence            999999999999999999999999763 3679999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEec
Q 024116          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT  243 (272)
Q Consensus       164 ~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~t  243 (272)
                      |+||++|+++.+++++|||||+|+|+|++++++||++|++|||+|+++.+          ++++|||||+++.++++++|
T Consensus       186 t~chs~T~dl~~~~k~ADIvIsAvGkp~~i~~~~vk~gavVIDvGin~~~----------gkl~GDvd~~~v~~~a~~iT  255 (282)
T PRK14180        186 TTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVD----------GKIVGDVDFAAVKDKVAAIT  255 (282)
T ss_pred             EEEcCCCCCHHHHhhhcCEEEEccCCcCcCCHHHcCCCcEEEEecccccC----------CceeCCcCHHHHHhhccEec
Confidence            99999999999999999999999999999999999999999999999864          58999999999999999999


Q ss_pred             cCCCcccHHHHHHHHHHHHHHHHHHh
Q 024116          244 PVPGGVGPMTVAMLLSNTLDSAKRAY  269 (272)
Q Consensus       244 pvpGGvGp~T~amL~~n~v~a~~~~~  269 (272)
                      ||||||||+|++|||+|+++++++++
T Consensus       256 PVPGGVGp~T~a~L~~Nl~~a~~~~~  281 (282)
T PRK14180        256 PVPGGVGPMTITELLYNTFQCAQELN  281 (282)
T ss_pred             cCCCChhHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999998765

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.6e-81  Score=574.13  Aligned_cols=261  Identities=47%  Similarity=0.772  Sum_probs=248.1

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHH
Q 024116            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (272)
Q Consensus         5 ~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~   84 (272)
                      .|++|+||+|++|+||+|..|+++|.|+|+++||+++.++||++++|+|+++.|++||+|++||||+||+|||+|+++++
T Consensus        28 ~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~  107 (297)
T PRK14167         28 AGVTPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDRE  107 (297)
T ss_pred             CCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhC----C
Q 024116           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----H  160 (272)
Q Consensus        85 i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~----g  160 (272)
                      ++++|+|+|||||+|+.|.|+++.|  .+.|.||||+|++++|++|+++++||+|+|||||..||||++++|.++    +
T Consensus       108 i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~  185 (297)
T PRK14167        108 VLRRIDPAKDVDGFHPENVGRLVAG--DARFKPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGN  185 (297)
T ss_pred             HHhccCcccCcccCChhhhHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCC
Confidence            9999999999999999999999976  578999999999999999999999999999999999999999999998    8


Q ss_pred             CEEEEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhce
Q 024116          161 ATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS  240 (272)
Q Consensus       161 a~V~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~  240 (272)
                      ||||+||++|+++++++++|||||+|+|+|++++++|+|+|++|||+|+|+.+   ++ +..+.+++|||||+++.++++
T Consensus       186 aTVtvchs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gaiVIDvGin~~~---~~-~~~g~kl~GDVd~e~v~~~a~  261 (297)
T PRK14167        186 ATVTVCHSRTDDLAAKTRRADIVVAAAGVPELIDGSMLSEGATVIDVGINRVD---AD-TEKGYELVGDVEFESAKEKAS  261 (297)
T ss_pred             CEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEccccccC---cc-cccCCceeecCcHHHHHhhce
Confidence            99999999999999999999999999999999999999999999999999964   11 111228999999999999999


Q ss_pred             EeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          241 VITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       241 ~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                      ++|||||||||+|++|||+|++++++++++.
T Consensus       262 ~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~~  292 (297)
T PRK14167        262 AITPVPGGVGPMTRAMLLYNTVKAASLQEGV  292 (297)
T ss_pred             EecCCCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999988764

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1e-81  Score=570.81  Aligned_cols=248  Identities=39%  Similarity=0.703  Sum_probs=241.5

Q ss_pred             CCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHH
Q 024116            7 KVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKIL   86 (272)
Q Consensus         7 ~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~   86 (272)
                      .+|+|++|++|+||+|..|+++|.|+|+++||+++.++||++++|+|+++.|++||+|++||||+||+|||+|+++++++
T Consensus        31 ~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~  110 (278)
T PRK14172         31 SIPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKIT  110 (278)
T ss_pred             CCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHH
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEE
Q 024116           87 DAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV  166 (272)
Q Consensus        87 ~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~  166 (272)
                      ++|+|+|||||+|+.|.|+++.|  .++|+||||+|++++|++|+++++||+|+|||||..||+|++++|.++||+||+|
T Consensus       111 ~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~c  188 (278)
T PRK14172        111 NKIDANKDIDCLTFISVGKFYKG--EKCFLPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTIC  188 (278)
T ss_pred             hccCcccccCccCHhhHHHHhCC--CCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEe
Confidence            99999999999999999999977  5679999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEeccCC
Q 024116          167 HALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVP  246 (272)
Q Consensus       167 ~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvp  246 (272)
                      |++|+++.+++++|||||+|+|+|++++++|+|+|++|||+|+++.+          ++++|||||+++.+++++|||||
T Consensus       189 hs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDvGin~~~----------gkl~GDvd~~~v~~~a~~iTPVP  258 (278)
T PRK14172        189 HSKTKNLKEVCKKADILVVAIGRPKFIDEEYVKEGAIVIDVGTSSVN----------GKITGDVNFDKVIDKASYITPVP  258 (278)
T ss_pred             CCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCcEEEEeeccccC----------CceeeeccHHHHHhhccEecCCC
Confidence            99999999999999999999999999999999999999999999864          58999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHHHH
Q 024116          247 GGVGPMTVAMLLSNTLDSAK  266 (272)
Q Consensus       247 GGvGp~T~amL~~n~v~a~~  266 (272)
                      |||||+|++|||+|++++++
T Consensus       259 GGVGp~T~a~L~~N~~~a~~  278 (278)
T PRK14172        259 GGVGSLTTTLLIKNVCEALK  278 (278)
T ss_pred             CCccHHHHHHHHHHHHHhcC
Confidence            99999999999999999864

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.5e-81  Score=571.80  Aligned_cols=256  Identities=48%  Similarity=0.760  Sum_probs=247.8

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHH
Q 024116            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (272)
Q Consensus         4 ~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~   83 (272)
                      +.|++|+||+|++|+||+|..|+++|.|+|+++||+++.++||++++|+||++.|++||+|++||||+||+|||+|++++
T Consensus        27 ~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~  106 (286)
T PRK14184         27 RHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQ  106 (286)
T ss_pred             ccCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHH
Confidence            44789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHh----C
Q 024116           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR----H  159 (272)
Q Consensus        84 ~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~----~  159 (272)
                      +++++|+|+|||||+|+.|.|+|+.+  .+.|+||||.|++++|++|+++++||+|+|||||.+||+|++++|.+    +
T Consensus       107 ~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~  184 (286)
T PRK14184        107 RCLELIDPAKDVDGFHPENMGRLALG--LPGFRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFA  184 (286)
T ss_pred             HHHhccCcccCcccCCHhhHHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccC
Confidence            99999999999999999999999976  57799999999999999999999999999999999999999999999    8


Q ss_pred             CCEEEEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhc
Q 024116          160 HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLA  239 (272)
Q Consensus       160 ga~V~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~  239 (272)
                      ||+|++||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+++.+          ++++|||||+++.+++
T Consensus       185 ~AtVt~~hs~t~~l~~~~~~ADIVI~AvG~p~li~~~~vk~GavVIDVGi~~~~----------~~l~GDVdf~~v~~~a  254 (286)
T PRK14184        185 NATVTVCHSRTPDLAEECREADFLFVAIGRPRFVTADMVKPGAVVVDVGINRTD----------DGLVGDCDFEGLSDVA  254 (286)
T ss_pred             CCEEEEEeCCchhHHHHHHhCCEEEEecCCCCcCCHHHcCCCCEEEEeeeeccC----------CCccCCccHHHHHhhc
Confidence            999999999999999999999999999999999999999999999999999965          3699999999999999


Q ss_pred             eEeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          240 SVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       240 ~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                      +++|||||||||+|++|||+|+++++++..|+
T Consensus       255 ~~iTPVPGGVGp~Tva~Ll~N~~~a~~~~~~~  286 (286)
T PRK14184        255 SAITPVPGGVGPMTIAQLLVNTVQSWKERVGL  286 (286)
T ss_pred             eEecCCCCCChHHHHHHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999988774

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.7e-81  Score=571.09  Aligned_cols=259  Identities=44%  Similarity=0.731  Sum_probs=245.6

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHH
Q 024116            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (272)
Q Consensus         5 ~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~   84 (272)
                      .+++|+||+|++|+||+|..|++.|.|+|+++||+++.++||++++|+|+++.|++||+|++||||+||+|||+|+++++
T Consensus        23 l~~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~  102 (287)
T PRK14181         23 SSTAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQA  102 (287)
T ss_pred             hCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhC----C
Q 024116           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----H  160 (272)
Q Consensus        85 i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~----g  160 (272)
                      ++++|+|+|||||+|+.|+|+|+.|+ .+.|+||||+|++++|++|+++++||+|+|||||.+||||++++|+++    |
T Consensus       103 i~~~I~p~KDVDGl~p~n~g~l~~g~-~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~  181 (287)
T PRK14181        103 ILQAISPDKDVDGLHPVNMGKLLLGE-TDGFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTN  181 (287)
T ss_pred             HHhccCcccCcccCChhhHHHHhcCC-CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCC
Confidence            99999999999999999999999773 467999999999999999999999999999999999999999999999    8


Q ss_pred             CEEEEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhce
Q 024116          161 ATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS  240 (272)
Q Consensus       161 a~V~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~  240 (272)
                      |+||+||++|+++++++++|||||+|+|+|++++++|+|+|++|||+|+++..   +... ++.+++|||||+++.++++
T Consensus       182 AtVtvchs~T~~l~~~~~~ADIvV~AvG~p~~i~~~~ik~GavVIDvGin~~~---~~~~-~g~kl~GDVd~e~~~~~a~  257 (287)
T PRK14181        182 ATVTLLHSQSENLTEILKTADIIIAAIGVPLFIKEEMIAEKAVIVDVGTSRVP---AANP-KGYILVGDVDFNNVVPKCR  257 (287)
T ss_pred             CEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecccccc---cccC-CCCeeEeccchHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999853   1110 1128999999999999999


Q ss_pred             EeccCCCcccHHHHHHHHHHHHHHHHHH
Q 024116          241 VITPVPGGVGPMTVAMLLSNTLDSAKRA  268 (272)
Q Consensus       241 ~~tpvpGGvGp~T~amL~~n~v~a~~~~  268 (272)
                      ++|||||||||+|++|||+|++++++++
T Consensus       258 ~iTPVPGGVGp~T~a~L~~N~~~a~~~~  285 (287)
T PRK14181        258 AITPVPGGVGPMTVAMLMRNTWESYLRH  285 (287)
T ss_pred             cccCCCCchHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999875

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2.5e-81  Score=572.89  Aligned_cols=261  Identities=49%  Similarity=0.757  Sum_probs=248.2

Q ss_pred             CCCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCH
Q 024116            3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDE   82 (272)
Q Consensus         3 ~~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~   82 (272)
                      ++.|++|+||+|++|+||+|..|+++|.|+|+++||+++.++||++++|+|+++.|++||+|++||||+||+|||+|+++
T Consensus        27 ~~~g~~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~  106 (297)
T PRK14186         27 PKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDE  106 (297)
T ss_pred             HhcCCCceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCH
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE
Q 024116           83 GKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT  162 (272)
Q Consensus        83 ~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~  162 (272)
                      ++++++|+|+|||||+|+.|.|+++.|  ...|.||||.|++++|++|+++++||+|+|||||..||+|++++|.++||+
T Consensus       107 ~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~at  184 (297)
T PRK14186        107 VPLLHAIDPDKDADGLHPLNLGRLVKG--EPGLRSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANAT  184 (297)
T ss_pred             HHHHhccCcccCcccCChhhHHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCE
Confidence            999999999999999999999999976  467999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEe
Q 024116          163 VSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVI  242 (272)
Q Consensus       163 V~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~  242 (272)
                      ||+||++|+++++++++|||||+|+|+|++++++|+|+|++|||+|+++.+   ++.  .+++++|||||+++.++++++
T Consensus       185 Vtv~hs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDvGin~~~---~~~--~~gkl~GDvd~~~v~~~a~~i  259 (297)
T PRK14186        185 VTIAHSRTQDLASITREADILVAAAGRPNLIGAEMVKPGAVVVDVGIHRLP---SSD--GKTRLCGDVDFEEVEPVAAAI  259 (297)
T ss_pred             EEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecccccc---ccc--cCCceeCCccHHHHHhhceEe
Confidence            999999999999999999999999999999999999999999999999853   111  125899999999999999999


Q ss_pred             ccCCCcccHHHHHHHHHHHHHHHHHHhC
Q 024116          243 TPVPGGVGPMTVAMLLSNTLDSAKRAYG  270 (272)
Q Consensus       243 tpvpGGvGp~T~amL~~n~v~a~~~~~~  270 (272)
                      |||||||||+|++|||+|++++++++.+
T Consensus       260 TPVPGGVGp~T~a~L~~Nl~~a~~~~~~  287 (297)
T PRK14186        260 TPVPGGVGPMTVTMLLVNTVLSWQKRHG  287 (297)
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999987653

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=6.3e-81  Score=565.94  Aligned_cols=252  Identities=50%  Similarity=0.806  Sum_probs=244.9

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHH
Q 024116            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (272)
Q Consensus         5 ~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~   84 (272)
                      .|++|+|++|++|+||+|..|++.|.|+|+++||+++.++||++++|+|+++.|++||+|++||||+||+|||+|+++.+
T Consensus        28 ~g~~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~  107 (281)
T PRK14183         28 KNIVPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTK  107 (281)
T ss_pred             CCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE
Q 024116           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS  164 (272)
Q Consensus        85 i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~  164 (272)
                      ++++|+|+|||||+|+.|.|+++.|  .++|+||||.|++++|++|+++++||+|+|||||..||+|++++|.++||+||
T Consensus       108 i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVt  185 (281)
T PRK14183        108 ILEAIDPKKDVDGFHPYNVGRLVTG--LDGFVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVD  185 (281)
T ss_pred             HHhccCchhcccccChhhhhHHhcC--CCCCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence            9999999999999999999999977  57899999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEecc
Q 024116          165 IVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITP  244 (272)
Q Consensus       165 v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tp  244 (272)
                      +||++|+++.+++++|||||+|+|+|++++++||++|++|||+|+++.+         ++|++|||||+++.++++++||
T Consensus       186 i~hs~T~~l~~~~~~ADIvV~AvGkp~~i~~~~vk~gavvIDvGin~~~---------~gkl~GDVd~~~~~~~a~~iTP  256 (281)
T PRK14183        186 ICHIFTKDLKAHTKKADIVIVGVGKPNLITEDMVKEGAIVIDIGINRTE---------DGRLVGDVDFENVAKKCSYITP  256 (281)
T ss_pred             EeCCCCcCHHHHHhhCCEEEEecCcccccCHHHcCCCcEEEEeeccccC---------CCCeECCccHHHHHhhceEecC
Confidence            9999999999999999999999999999999999999999999999864         2689999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHHHHH
Q 024116          245 VPGGVGPMTVAMLLSNTLDSAKR  267 (272)
Q Consensus       245 vpGGvGp~T~amL~~n~v~a~~~  267 (272)
                      |||||||+|++|||+|+++++++
T Consensus       257 VPGGVGpvT~a~L~~N~~~a~~~  279 (281)
T PRK14183        257 VPGGVGPMTIAMLLSNTLKAAKN  279 (281)
T ss_pred             CCCCChHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999875

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.1e-80  Score=565.52  Aligned_cols=254  Identities=46%  Similarity=0.783  Sum_probs=244.6

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHH
Q 024116            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (272)
Q Consensus         5 ~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~   84 (272)
                      .|++|+||+|++|+|++|..|++.|.|+|+++||+++.++||++++|+|+++.|++||+|++||||+||+|||+|+++.+
T Consensus        29 ~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~  108 (284)
T PRK14193         29 KGITPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPKHLDENA  108 (284)
T ss_pred             CCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHh--CCCE
Q 024116           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR--HHAT  162 (272)
Q Consensus        85 i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~--~ga~  162 (272)
                      ++++|+|+|||||+|+.|.|+|+.+  ...|+||||.|++++|++|+++++||+|+|||||..||+|++++|++  +||+
T Consensus       109 i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~at  186 (284)
T PRK14193        109 VLERIDPAKDADGLHPTNLGRLVLN--EPAPLPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENAT  186 (284)
T ss_pred             HHhcCCcccCccCCChhhhhHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCE
Confidence            9999999999999999999999976  46789999999999999999999999999999999999999999998  7999


Q ss_pred             EEEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEe
Q 024116          163 VSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVI  242 (272)
Q Consensus       163 V~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~  242 (272)
                      ||+||++|+++++++++|||||+|+|+|++++++|+|+|++|||+|+++..         +++++|||| +++.++++++
T Consensus       187 Vtvchs~T~~l~~~~k~ADIvV~AvGkp~~i~~~~ik~GavVIDvGin~~~---------~gkl~GDvd-~~v~~~a~~i  256 (284)
T PRK14193        187 VTLCHTGTRDLAAHTRRADIIVAAAGVAHLVTADMVKPGAAVLDVGVSRAG---------DGKLVGDVH-PDVWEVAGAV  256 (284)
T ss_pred             EEEeCCCCCCHHHHHHhCCEEEEecCCcCccCHHHcCCCCEEEEccccccC---------CCcEEeecC-HhHHhhCCEE
Confidence            999999999999999999999999999999999999999999999999953         268999999 8889999999


Q ss_pred             ccCCCcccHHHHHHHHHHHHHHHHHHhC
Q 024116          243 TPVPGGVGPMTVAMLLSNTLDSAKRAYG  270 (272)
Q Consensus       243 tpvpGGvGp~T~amL~~n~v~a~~~~~~  270 (272)
                      |||||||||+|++|||+|+++++++..|
T Consensus       257 TPVPGGVGp~T~a~L~~N~~~a~~~~~~  284 (284)
T PRK14193        257 SPNPGGVGPMTRAFLLTNVVERAERRAG  284 (284)
T ss_pred             eCCCCChhHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999987644

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2e-80  Score=564.63  Aligned_cols=255  Identities=50%  Similarity=0.815  Sum_probs=247.5

Q ss_pred             CCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHH
Q 024116            6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKI   85 (272)
Q Consensus         6 ~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i   85 (272)
                      |++|+||+|++|+||+|..|+++|.|+|+++||+++.++||++++++|+++.|++||+|++||||+||+|||+|++++++
T Consensus        30 g~~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i  109 (285)
T PRK14189         30 GHQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKV  109 (285)
T ss_pred             CCCCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEE
Q 024116           86 LDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSI  165 (272)
Q Consensus        86 ~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v  165 (272)
                      +++|+|+|||||+|+.|.|+++.+  .+.|+||||.|++++|++|+++++||+|+|||+|.+||+|++++|.++|++|++
T Consensus       110 ~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~  187 (285)
T PRK14189        110 IEAIAPEKDVDGFHVANAGALMTG--QPLFRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTI  187 (285)
T ss_pred             HhhcCcccCcccCChhhhhHhhCC--CCCCcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEE
Confidence            999999999999999999999976  578999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEeccC
Q 024116          166 VHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPV  245 (272)
Q Consensus       166 ~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpv  245 (272)
                      ||++|+++.+++++|||||+|+|+|++++++|+|+|++|||+|+++..         +++++|||||+++.++++++|||
T Consensus       188 ~hs~t~~l~~~~~~ADIVV~avG~~~~i~~~~ik~gavVIDVGin~~~---------~gkl~GDVd~~~v~~~a~~iTPV  258 (285)
T PRK14189        188 CHSKTRDLAAHTRQADIVVAAVGKRNVLTADMVKPGATVIDVGMNRDD---------AGKLCGDVDFAGVKEVAGYITPV  258 (285)
T ss_pred             ecCCCCCHHHHhhhCCEEEEcCCCcCccCHHHcCCCCEEEEccccccC---------CCCeeCCccHHHHHhhceEecCC
Confidence            999999999999999999999999999999999999999999999864         26899999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          246 PGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       246 pGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                      ||||||+|++|||+|++++++++...
T Consensus       259 PGGVGp~T~a~Ll~N~~~a~~~~~~~  284 (285)
T PRK14189        259 PGGVGPMTITMLLVNTIEAAERAAAA  284 (285)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999988753

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.1e-80  Score=565.10  Aligned_cols=251  Identities=43%  Similarity=0.744  Sum_probs=242.7

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHH
Q 024116            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (272)
Q Consensus         4 ~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~   83 (272)
                      +.+.+|+||+|++|+||+|..|+++|.|+|+++||+++.++||++++++||++.|++||+|++||||+||+|||+|+++.
T Consensus        29 ~~~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~  108 (284)
T PRK14177         29 KNKRIPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDER  108 (284)
T ss_pred             cCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHH
Confidence            44678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024116           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (272)
Q Consensus        84 ~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V  163 (272)
                      +++++|+|+|||||+|+.|.|+|+.|  .+.|+||||+|++++|++|+++++||+|+|||||.+||||++++|.++||+|
T Consensus       109 ~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atV  186 (284)
T PRK14177        109 AAFDRIALEKDVDGVTTLSFGKLSMG--VETYLPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATV  186 (284)
T ss_pred             HHHhccCcccccccCChhhHHHHHcC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEE
Confidence            99999999999999999999999976  5679999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEec
Q 024116          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT  243 (272)
Q Consensus       164 ~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~t  243 (272)
                      |+||++|+++++++++|||||+|+|+|++++++|+|+|++|||+|+++             +++|||||+++.++++++|
T Consensus       187 t~chs~T~~l~~~~~~ADIvIsAvGk~~~i~~~~ik~gavVIDvGin~-------------~~~GDVd~~~v~~~a~~iT  253 (284)
T PRK14177        187 TLCHSKTQNLPSIVRQADIIVGAVGKPEFIKADWISEGAVLLDAGYNP-------------GNVGDIEISKAKDKSSFYT  253 (284)
T ss_pred             EEeCCCCCCHHHHHhhCCEEEEeCCCcCccCHHHcCCCCEEEEecCcc-------------cccCCcCHHHHhhhccEec
Confidence            999999999999999999999999999999999999999999999986             3689999999999999999


Q ss_pred             cCCCcccHHHHHHHHHHHHHHHHHHh
Q 024116          244 PVPGGVGPMTVAMLLSNTLDSAKRAY  269 (272)
Q Consensus       244 pvpGGvGp~T~amL~~n~v~a~~~~~  269 (272)
                      ||||||||+|++|||+|+++++++..
T Consensus       254 PVPGGVGp~T~a~L~~N~~~a~~~~~  279 (284)
T PRK14177        254 PVPGGVGPMTIAVLLLQTLYSFKEHF  279 (284)
T ss_pred             CCCCCChHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999987654

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.9e-80  Score=564.35  Aligned_cols=253  Identities=44%  Similarity=0.780  Sum_probs=244.9

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHH
Q 024116            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (272)
Q Consensus         4 ~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~   83 (272)
                      +.|++|+||+|++|+||+|..|++.|.|+|+++||+++.++||++++|+||++.|++||+|++||||+||+|||+|+++.
T Consensus        34 ~~g~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~  113 (287)
T PRK14176         34 NRGITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQ  113 (287)
T ss_pred             ccCCCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHH
Confidence            34889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024116           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (272)
Q Consensus        84 ~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V  163 (272)
                      +++++|+|+|||||+|+.|.|+|+.|  .+.|+||||+|++++|++|+++++||+|+|||||..||+|++++|.++||+|
T Consensus       114 ~i~~~I~p~KDVDGl~~~N~g~l~~g--~~~~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atV  191 (287)
T PRK14176        114 EAMEAIDPAKDADGFHPYNMGKLMIG--DEGLVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATV  191 (287)
T ss_pred             HHHhccCccccccccChhhhhhHhcC--CCCCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEE
Confidence            99999999999999999999999976  5679999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEec
Q 024116          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT  243 (272)
Q Consensus       164 ~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~t  243 (272)
                      |+||++|+++++++++|||||+|+|+|++++++|+++|++|||+|+++.+          +|++|||||+++.++++++|
T Consensus       192 tv~hs~T~~l~~~~~~ADIvv~AvG~p~~i~~~~vk~gavVIDvGin~~~----------gkl~GDvd~~~~~~~a~~iT  261 (287)
T PRK14176        192 SVCHVFTDDLKKYTLDADILVVATGVKHLIKADMVKEGAVIFDVGITKEE----------DKVYGDVDFENVIKKASLIT  261 (287)
T ss_pred             EEEeccCCCHHHHHhhCCEEEEccCCccccCHHHcCCCcEEEEecccccC----------CCccCCcCHHHHHhhceEcC
Confidence            99999999999999999999999999999999999999999999999754          68999999999999999999


Q ss_pred             cCCCcccHHHHHHHHHHHHHHHHHH
Q 024116          244 PVPGGVGPMTVAMLLSNTLDSAKRA  268 (272)
Q Consensus       244 pvpGGvGp~T~amL~~n~v~a~~~~  268 (272)
                      ||||||||+|++|||+|+++++++.
T Consensus       262 PVPGGVGp~T~a~L~~n~~~a~~~~  286 (287)
T PRK14176        262 PVPGGVGPLTIAMLMKHVLMCAEKS  286 (287)
T ss_pred             CCCCCChHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999998753

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2.1e-80  Score=564.05  Aligned_cols=255  Identities=49%  Similarity=0.770  Sum_probs=246.6

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHH
Q 024116            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (272)
Q Consensus         4 ~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~   83 (272)
                      +.|++|+|++|++|+||+|..|+++|.|+|+++||+++.++||++++|+|+++.|++||+|++||||+||+|||+|+++.
T Consensus        27 ~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~  106 (285)
T PRK14191         27 QTGKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTK  106 (285)
T ss_pred             cCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024116           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (272)
Q Consensus        84 ~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V  163 (272)
                      +++++|+|+|||||+|+.|+|+|+.|  .++|+||||+|++++|++|+++++||+|+|||+|..||+|++++|.++||+|
T Consensus       107 ~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtV  184 (285)
T PRK14191        107 MVLEAIDPNKDVDGFHPLNIGKLCSQ--LDGFVPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASV  184 (285)
T ss_pred             HHHhcCCccccccccChhhHHHHhcC--CCCCCCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEE
Confidence            99999999999999999999999976  5789999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEec
Q 024116          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT  243 (272)
Q Consensus       164 ~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~t  243 (272)
                      ++||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+++.+         ++|++|||||+++.++++++|
T Consensus       185 tv~hs~t~~l~~~~~~ADIvV~AvG~p~~i~~~~vk~GavVIDvGi~~~~---------~gklvGDvd~e~v~~~a~~iT  255 (285)
T PRK14191        185 SVCHILTKDLSFYTQNADIVCVGVGKPDLIKASMVKKGAVVVDIGINRLN---------DGRLVGDVDFENVAPKASFIT  255 (285)
T ss_pred             EEEeCCcHHHHHHHHhCCEEEEecCCCCcCCHHHcCCCcEEEEeeccccc---------CCceeccccHHHHhhhccEEe
Confidence            99999999999999999999999999999999999999999999999864         268999999999999999999


Q ss_pred             cCCCcccHHHHHHHHHHHHHHHHHHh
Q 024116          244 PVPGGVGPMTVAMLLSNTLDSAKRAY  269 (272)
Q Consensus       244 pvpGGvGp~T~amL~~n~v~a~~~~~  269 (272)
                      ||||||||+|++|||+|+++++++..
T Consensus       256 PVPGGVGpvT~a~L~~N~~~a~~~~~  281 (285)
T PRK14191        256 PVPGGVGPMTIVSLLENTLIAAEKRQ  281 (285)
T ss_pred             cCCCCChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998653

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2e-80  Score=564.14  Aligned_cols=256  Identities=49%  Similarity=0.800  Sum_probs=247.6

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHH
Q 024116            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (272)
Q Consensus         4 ~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~   83 (272)
                      +.+++|+||+|+||+||+|..|++.|.|+|+++||+++.++||++++|+||++.|++||+|++||||+||+|||+|+++.
T Consensus        29 ~~~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~  108 (285)
T PRK10792         29 AGLRAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAHIDNV  108 (285)
T ss_pred             cCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHH
Confidence            34778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024116           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (272)
Q Consensus        84 ~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V  163 (272)
                      +++++|+|+|||||+|+.|.|+|+.|  .++|+||||.|++++|++|+++++||+|+|||||..||+|++++|.++||+|
T Consensus       109 ~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atV  186 (285)
T PRK10792        109 KVLERIHPDKDVDGFHPYNVGRLAQR--IPLLRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTV  186 (285)
T ss_pred             HHHhccCcccccCccChhhHhHHhCC--CCCCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeE
Confidence            99999999999999999999999876  5679999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEec
Q 024116          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT  243 (272)
Q Consensus       164 ~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~t  243 (272)
                      |+||++|+++++++++|||||+|+|+|++++++|+++|++|||+|+++.+         +++++|||||+++.++++++|
T Consensus       187 tv~hs~T~~l~~~~~~ADIvi~avG~p~~v~~~~vk~gavVIDvGin~~~---------~gk~~GDvd~~~~~~~a~~it  257 (285)
T PRK10792        187 TVCHRFTKNLRHHVRNADLLVVAVGKPGFIPGEWIKPGAIVIDVGINRLE---------DGKLVGDVEFETAAERASWIT  257 (285)
T ss_pred             EEEECCCCCHHHHHhhCCEEEEcCCCcccccHHHcCCCcEEEEccccccc---------CCCcCCCcCHHHHHhhccCcC
Confidence            99999999999999999999999999999999999999999999999864         258999999999999999999


Q ss_pred             cCCCcccHHHHHHHHHHHHHHHHHHhC
Q 024116          244 PVPGGVGPMTVAMLLSNTLDSAKRAYG  270 (272)
Q Consensus       244 pvpGGvGp~T~amL~~n~v~a~~~~~~  270 (272)
                      ||||||||+|++|||+|+++++++|..
T Consensus       258 PvPGGVGp~T~a~L~~N~~~a~~~~~~  284 (285)
T PRK10792        258 PVPGGVGPMTVATLLENTLQACEEYHD  284 (285)
T ss_pred             CCCCCChHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999864

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=6e-80  Score=561.50  Aligned_cols=255  Identities=45%  Similarity=0.740  Sum_probs=243.5

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHH
Q 024116            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (272)
Q Consensus         5 ~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~   84 (272)
                      .+++|+||+|++|+||+|..|++.|.|+|+++||+++.++||++++|+|+++.|++||+|++||||+||+|||+|+++.+
T Consensus        26 l~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~  105 (287)
T PRK14173         26 LPFVPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNADPEVDGILVQLPLPPHIDFQR  105 (287)
T ss_pred             hCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE
Q 024116           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS  164 (272)
Q Consensus        85 i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~  164 (272)
                      ++++|+|+|||||+|+.|.|+|+.|  .+.|+||||+|++++|++|+++++||+|+|||||..||+|++++|.++||+||
T Consensus       106 i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt  183 (287)
T PRK14173        106 VLEAIDPLKDVDGFHPLNVGRLWMG--GEALEPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVT  183 (287)
T ss_pred             HHhccCccccccccChhhhHHHhcC--CCCCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE
Confidence            9999999999999999999999976  46799999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCce--EecccchhhhhhhceEe
Q 024116          165 IVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYR--LMGDVCYEEAMRLASVI  242 (272)
Q Consensus       165 v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k--~~Gdvd~~~~~~~~~~~  242 (272)
                      +||++|+++++++++|||||+|+|+|++++++|||+|++|||+|+++..   ++    +++  ++|||| .++.++++++
T Consensus       184 ichs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDVGin~~~---~~----~gk~~l~GDVd-~~v~~~a~~i  255 (287)
T PRK14173        184 LAHSKTQDLPAVTRRADVLVVAVGRPHLITPEMVRPGAVVVDVGINRVG---GN----GGRDILTGDVH-PEVAEVAGAL  255 (287)
T ss_pred             EeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEccCcccc---CC----CCceeeecccc-HhHHhhCcEE
Confidence            9999999999999999999999999999999999999999999999852   10    246  999999 5789999999


Q ss_pred             ccCCCcccHHHHHHHHHHHHHHHHHHh
Q 024116          243 TPVPGGVGPMTVAMLLSNTLDSAKRAY  269 (272)
Q Consensus       243 tpvpGGvGp~T~amL~~n~v~a~~~~~  269 (272)
                      |||||||||+|++|||+|+++++++..
T Consensus       256 TPVPGGVGp~T~a~L~~N~~~a~~~~~  282 (287)
T PRK14173        256 TPVPGGVGPMTVAMLMANTVIAALRRR  282 (287)
T ss_pred             ecCCCChhHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999998754

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=8.5e-80  Score=560.19  Aligned_cols=255  Identities=48%  Similarity=0.796  Sum_probs=247.6

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHH
Q 024116            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (272)
Q Consensus         4 ~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~   83 (272)
                      +.|++|+||+|++|+||+|..|++.|.|+|+++||+++.++||++++++|+++.|++||+|++||||+||+|||+|++++
T Consensus        28 ~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~  107 (284)
T PRK14179         28 EKGIVPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKHINEE  107 (284)
T ss_pred             ccCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHH
Confidence            44789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024116           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (272)
Q Consensus        84 ~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V  163 (272)
                      +++++|+|+|||||+|+.|.|+++.+  .++|+||||.|++++|++|+++++||+|+|||+|+.||+|++++|+++|++|
T Consensus       108 ~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatV  185 (284)
T PRK14179        108 KILLAIDPKKDVDGFHPMNTGHLWSG--RPVMIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATV  185 (284)
T ss_pred             HHHhccCccccccccCHhhHHHHhCC--CCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEE
Confidence            99999999999999999999999976  5779999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEec
Q 024116          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT  243 (272)
Q Consensus       164 ~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~t  243 (272)
                      ++||++++++++.+++|||||+|+|.|++++++|+++|++|||+|+++..         +++++|||||+++.++++++|
T Consensus       186 tv~~s~t~~l~~~~~~ADIVI~avg~~~~v~~~~ik~GavVIDvgin~~~---------~gkl~GDVdf~~v~~~a~~iT  256 (284)
T PRK14179        186 TLTHSRTRNLAEVARKADILVVAIGRGHFVTKEFVKEGAVVIDVGMNRDE---------NGKLIGDVDFDEVAEVASYIT  256 (284)
T ss_pred             EEECCCCCCHHHHHhhCCEEEEecCccccCCHHHccCCcEEEEecceecC---------CCCeecCccHHHHHhhccEec
Confidence            99999999999999999999999999999999999999999999999864         268999999999999999999


Q ss_pred             cCCCcccHHHHHHHHHHHHHHHHHHh
Q 024116          244 PVPGGVGPMTVAMLLSNTLDSAKRAY  269 (272)
Q Consensus       244 pvpGGvGp~T~amL~~n~v~a~~~~~  269 (272)
                      ||||||||+|++|||+|+++++++|+
T Consensus       257 PVPGGVGp~T~a~L~~N~~~a~~~~~  282 (284)
T PRK14179        257 PVPGGVGPMTITMLMEQTYQAALRSL  282 (284)
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999997

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.7e-79  Score=559.07  Aligned_cols=256  Identities=48%  Similarity=0.807  Sum_probs=247.7

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHH
Q 024116            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (272)
Q Consensus         5 ~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~   84 (272)
                      .|++|+|++|++|+||+|..|++.|.|+|+++||+++.++||++++|+|+++.|++||+|++||||+||+|||+|+++++
T Consensus        29 ~g~~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~  108 (286)
T PRK14175         29 KGFTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQK  108 (286)
T ss_pred             cCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE
Q 024116           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS  164 (272)
Q Consensus        85 i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~  164 (272)
                      ++++|+|+|||||+|+.|+|+|+.|  .++|+||||.|++++|++|+++++||+|+|||+|+.||+|++++|.++||+|+
T Consensus       109 i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVt  186 (286)
T PRK14175        109 ILEAINPEKDVDGFHPINIGKLYID--EQTFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVT  186 (286)
T ss_pred             HHhccCcccCcccCCccchHhHhcC--CCCCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE
Confidence            9999999999999999999999976  56899999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEecc
Q 024116          165 IVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITP  244 (272)
Q Consensus       165 v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tp  244 (272)
                      +|||+|+++.+++++|||||+|+|+|++++++|+++|++|||+|+++..         +++++|||||+++.++++++||
T Consensus       187 v~~s~t~~l~~~~~~ADIVIsAvg~p~~i~~~~vk~gavVIDvGi~~~~---------~gkl~GDvd~~~~~~~a~~iTP  257 (286)
T PRK14175        187 ILHSRSKDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDVGNTPDE---------NGKLKGDVDYDAVKEIAGAITP  257 (286)
T ss_pred             EEeCCchhHHHHHhhCCEEEECCCCCcccCHHHcCCCcEEEEcCCCcCC---------CCCeecCccHHHHHhhccCcCC
Confidence            9999999999999999999999999999999999999999999999853         2689999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          245 VPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       245 vpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                      |||||||+|++|||+|+++++++..++
T Consensus       258 VPGGVGp~T~a~L~~n~~~a~~~~~~~  284 (286)
T PRK14175        258 VPGGVGPLTITMVLNNTLLAEKMRRGI  284 (286)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999987765

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=4e-79  Score=558.80  Aligned_cols=264  Identities=51%  Similarity=0.817  Sum_probs=247.9

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHH
Q 024116            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (272)
Q Consensus         4 ~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~   83 (272)
                      +.|++|+||+|++|+||+|..|++.|.|+|+++||+++.++||++++|+|+++.|++||+|++||||+||+|||+|+|+.
T Consensus        27 ~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~  106 (295)
T PRK14174         27 KTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEF  106 (295)
T ss_pred             ccCCCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHH
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHh----C
Q 024116           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR----H  159 (272)
Q Consensus        84 ~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~----~  159 (272)
                      +++++|+|+|||||+|+.|.|+|+.|+..++|+||||+|++++|++|+++++||+|+|||||..||||++++|++    +
T Consensus       107 ~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~  186 (295)
T PRK14174        107 AVTLAIDPAKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKES  186 (295)
T ss_pred             HHHhcCCccccccccChhhHHHHhcCCCCCCcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccC
Confidence            999999999999999999999999774347899999999999999999999999999999999999999999998    7


Q ss_pred             CCEEEEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhc
Q 024116          160 HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLA  239 (272)
Q Consensus       160 ga~V~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~  239 (272)
                      +++|++||++|.++++++++|||||+|+|+|++++++|+|+|++|||+|+++.+   ++.+..+.|++|||||+++.+++
T Consensus       187 ~atVt~~hs~t~~l~~~~~~ADIvI~Avg~~~li~~~~vk~GavVIDVgi~~~~---~~~~~~g~kl~GDVd~~~v~~~a  263 (295)
T PRK14174        187 NCTVTICHSATKDIPSYTRQADILIAAIGKARFITADMVKPGAVVIDVGINRIE---DPSTKSGYRLVGDVDYEGVSAKA  263 (295)
T ss_pred             CCEEEEEeCCchhHHHHHHhCCEEEEecCccCccCHHHcCCCCEEEEeeccccc---cccccCCCceECCcCHHHHHhhc
Confidence            899999999999999999999999999999999999999999999999999864   21111122899999999999999


Q ss_pred             eEeccCCCcccHHHHHHHHHHHHHHHHHHhC
Q 024116          240 SVITPVPGGVGPMTVAMLLSNTLDSAKRAYG  270 (272)
Q Consensus       240 ~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~  270 (272)
                      +++|||||||||+|++|||+|+++++++...
T Consensus       264 ~~iTPVPGGVGp~T~a~L~~Nl~~a~~~~~~  294 (295)
T PRK14174        264 SAITPVPGGVGPMTIAMLLKNTLQSFERVNN  294 (295)
T ss_pred             cEecCCCCCchHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999987654

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.5e-78  Score=550.32  Aligned_cols=252  Identities=48%  Similarity=0.756  Sum_probs=244.8

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHH
Q 024116            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (272)
Q Consensus         5 ~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~   84 (272)
                      .|++|+||+|++|+||+|..|++.|.|+|+++||+++.++||++++|+||++.|++||+|++||||+||+|||+|+++++
T Consensus        23 lg~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~  102 (279)
T PRK14178         23 SGLYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTER  102 (279)
T ss_pred             hCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE
Q 024116           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS  164 (272)
Q Consensus        85 i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~  164 (272)
                      ++++|+|+|||||+|+.|.|+|+.|  .++|+||||.|++++|++|+++++||+|+|+|+|..||||++++|.++|++|+
T Consensus       103 v~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVt  180 (279)
T PRK14178        103 VIAAILPEKDVDGFHPLNLGRLVSG--LPGFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVT  180 (279)
T ss_pred             HHhccCcccCcccCChhhHHHHhCC--CCCCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeE
Confidence            9999999999999999999999976  57899999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEecc
Q 024116          165 IVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITP  244 (272)
Q Consensus       165 v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tp  244 (272)
                      +||++|+++.+.+++|||||+|+|+|++++++|+++|++|||+|+++.+          +|++|||||+++.++++++||
T Consensus       181 v~hs~t~~L~~~~~~ADIvI~Avgk~~lv~~~~vk~GavVIDVgi~~~~----------gkl~GDvdf~~~~~~a~~iTP  250 (279)
T PRK14178        181 ICHSKTENLKAELRQADILVSAAGKAGFITPDMVKPGATVIDVGINQVN----------GKLCGDVDFDAVKEIAGAITP  250 (279)
T ss_pred             EEecChhHHHHHHhhCCEEEECCCcccccCHHHcCCCcEEEEeeccccC----------CCCcCCccHHHHHhhccCcCC
Confidence            9999999999999999999999999999999999999999999999854          589999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHHHHHH
Q 024116          245 VPGGVGPMTVAMLLSNTLDSAKRA  268 (272)
Q Consensus       245 vpGGvGp~T~amL~~n~v~a~~~~  268 (272)
                      |||||||+|++|||+|+++++++.
T Consensus       251 VPGGVGp~T~a~L~~N~~~a~~~~  274 (279)
T PRK14178        251 VPGGVGPMTIATLMENTFDAAKMR  274 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999998764

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=6.6e-78  Score=551.32  Aligned_cols=256  Identities=48%  Similarity=0.821  Sum_probs=246.8

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHH
Q 024116            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (272)
Q Consensus         5 ~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~   84 (272)
                      .|++|+||+|++|+||+|..|++.|.|+|+++||+++.++||++++|+|+++.|++||+|++||||+||+|||+|+++.+
T Consensus        30 ~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~  109 (301)
T PRK14194         30 AGIEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPAHIDEAR  109 (301)
T ss_pred             CCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE
Q 024116           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS  164 (272)
Q Consensus        85 i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~  164 (272)
                      ++++|+|+|||||+|+.|+|+|+.|  .++|+||||.|++++|++|+++++||+|+|||+|+.+|+|++.+|.++|++|+
T Consensus       110 i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVt  187 (301)
T PRK14194        110 VLQAINPLKDVDGFHSENVGGLSQG--RDVLTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVT  187 (301)
T ss_pred             HHhccCchhccCccChhhhhHHhcC--CCCCCCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE
Confidence            9999999999999999999999976  57899999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCc--eEecccchhhhhhhceEe
Q 024116          165 IVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY--RLMGDVCYEEAMRLASVI  242 (272)
Q Consensus       165 v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~--k~~Gdvd~~~~~~~~~~~  242 (272)
                      +|||+++++++.+++|||||+++|.|++++++|+++|++|||+|+++..   +     ++  +++|||||+++.++++++
T Consensus       188 v~~~~t~~l~e~~~~ADIVIsavg~~~~v~~~~ik~GaiVIDvgin~~~---~-----~g~~kl~GDvdf~~~~~~a~~i  259 (301)
T PRK14194        188 VVHSRSTDAKALCRQADIVVAAVGRPRLIDADWLKPGAVVIDVGINRID---D-----DGRSRLVGDVDFDSALPVVSAI  259 (301)
T ss_pred             EECCCCCCHHHHHhcCCEEEEecCChhcccHhhccCCcEEEEecccccC---C-----CCCcceecccchHHHHhhccee
Confidence            9999999999999999999999999999999999999999999999853   1     13  899999999999999999


Q ss_pred             ccCCCcccHHHHHHHHHHHHHHHHHHhC
Q 024116          243 TPVPGGVGPMTVAMLLSNTLDSAKRAYG  270 (272)
Q Consensus       243 tpvpGGvGp~T~amL~~n~v~a~~~~~~  270 (272)
                      |||||||||+|++|||+|+++++++|+.
T Consensus       260 TPVPGGVGp~Tva~L~~N~~~a~~~~~~  287 (301)
T PRK14194        260 TPVPGGVGPMTIAFLMKNTVTAARLQAH  287 (301)
T ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999864

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=7.8e-76  Score=538.10  Aligned_cols=261  Identities=49%  Similarity=0.798  Sum_probs=245.7

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHH
Q 024116            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (272)
Q Consensus         4 ~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~   83 (272)
                      +.|++|+||+|++|+||+|..|++.|.|+|+++||+++.++||++++|+|+++.|++||+|++||||+||+|||+|++++
T Consensus        28 ~~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~  107 (296)
T PRK14188         28 AHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKHLDSE  107 (296)
T ss_pred             ccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHH
Confidence            34889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024116           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (272)
Q Consensus        84 ~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V  163 (272)
                      +++++|+|+|||||+|+.|+|+++.|  .++|+||||+|++++|++|+++++||+|+|||||+.+|+|++.+|+++|++|
T Consensus       108 ~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tV  185 (296)
T PRK14188        108 AVIQAIDPEKDVDGLHVVNAGRLATG--ETALVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATV  185 (296)
T ss_pred             HHHhccCcccccccCChhhHHHHhCC--CCCCcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEE
Confidence            99999999999999999999999976  5789999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCC-ceEecccchhhhhhhceEe
Q 024116          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG-YRLMGDVCYEEAMRLASVI  242 (272)
Q Consensus       164 ~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~-~k~~Gdvd~~~~~~~~~~~  242 (272)
                      ++||++|+++++.+++|||||+++|.|++++++|+++|++|||+|+++.+   ++....+ .+++|||||+++.++++++
T Consensus       186 tv~~~rT~~l~e~~~~ADIVIsavg~~~~v~~~~lk~GavVIDvGin~~~---~~~~~~g~~~l~GDvd~~~v~~~a~~i  262 (296)
T PRK14188        186 TIAHSRTRDLPAVCRRADILVAAVGRPEMVKGDWIKPGATVIDVGINRIP---APEKGEGKTRLVGDVAFAEAAEVAGAI  262 (296)
T ss_pred             EEECCCCCCHHHHHhcCCEEEEecCChhhcchheecCCCEEEEcCCcccC---CccccCCCceeeCCCCHHHHHhhccEe
Confidence            99998888999999999999999999999999999999999999999853   1110001 2799999999999999999


Q ss_pred             ccCCCcccHHHHHHHHHHHHHHHHHHh
Q 024116          243 TPVPGGVGPMTVAMLLSNTLDSAKRAY  269 (272)
Q Consensus       243 tpvpGGvGp~T~amL~~n~v~a~~~~~  269 (272)
                      |||||||||+|++|||+|+++++++..
T Consensus       263 TPVPGGVGp~T~a~L~~N~~~a~~~~~  289 (296)
T PRK14188        263 TPVPGGVGPMTIACLLANTLTAACRAA  289 (296)
T ss_pred             cCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999998754

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]

Probab=100.00  E-value=3.5e-75  Score=556.76  Aligned_cols=263  Identities=52%  Similarity=0.849  Sum_probs=255.9

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHH
Q 024116            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (272)
Q Consensus         4 ~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~   83 (272)
                      .-+++|.|+|||||+.++|..|+|+|.|+++++||++.++.||+++++-||+.+|.+||+|+.||||+||+|||.|+|++
T Consensus        30 ~PnF~p~LaIiQVGnR~DSnvYVrmKlKAA~e~Gid~~~iklPetiTe~ell~~I~~lNeD~tvHGiiVQLPLp~hide~  109 (935)
T KOG4230|consen   30 HPNFKPVLAIIQVGNREDSNVYVRMKLKAAKEIGIDAKHIKLPETITEGELLREIKALNEDPTVHGIIVQLPLPAHIDED  109 (935)
T ss_pred             CCCCCceEEEEEecCcCCcceeehhhhhHHHhcCCceEEecCcccccHHHHHHHHHhccCCCccceEEEeccCccccchh
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024116           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (272)
Q Consensus        84 ~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V  163 (272)
                      .+.++|+|+||||||+.+|.|+|..++.++.|+||||.||+++|+++++.+.||++||+|||.+||.|++.+|...++||
T Consensus       110 ~Vt~aI~peKDVDGf~~~NaG~Lak~~g~p~f~PCTPkGcmeLlk~a~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTV  189 (935)
T KOG4230|consen  110 TVTEAIDPEKDVDGFTRINAGRLAKGEGQPTFIPCTPKGCMELLKEAGVFVAGKNAVVLGRSKIVGSPIAALLLWANATV  189 (935)
T ss_pred             hHhhccCcccccccccccchhhhhccCCCceeeccChHHHHHHHHHcCCccccceeEEEecccccCChHHHHHHhcCceE
Confidence            99999999999999999999999988888999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEec
Q 024116          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT  243 (272)
Q Consensus       164 ~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~t  243 (272)
                      |+||++|+++.+.+.+|||||.|+|.|+|++.||+|||++|||+|+|+..   |+++.++.|++|||||+++.+.+++||
T Consensus       190 TiCHSKT~~lae~v~~ADIvIvAiG~PefVKgdWiKpGavVIDvGINyvp---D~~Kksg~klvGDVdfe~Akevas~IT  266 (935)
T KOG4230|consen  190 TICHSKTRNLAEKVSRADIVIVAIGQPEFVKGDWIKPGAVVIDVGINYVP---DPSKKSGFKLVGDVDFESAKEVASFIT  266 (935)
T ss_pred             EEecCCCccHHHHhccCCEEEEEcCCcceeecccccCCcEEEEccccccC---CCCCcccceEeeecchHhhhhhhhccc
Confidence            99999999999999999999999999999999999999999999999987   677666779999999999999999999


Q ss_pred             cCCCcccHHHHHHHHHHHHHHHHHHh
Q 024116          244 PVPGGVGPMTVAMLLSNTLDSAKRAY  269 (272)
Q Consensus       244 pvpGGvGp~T~amL~~n~v~a~~~~~  269 (272)
                      ||||||||||+||||+|++++++|+.
T Consensus       267 PVPGGVGPMTVAMLmqNtveaAKR~r  292 (935)
T KOG4230|consen  267 PVPGGVGPMTVAMLMQNTVEAAKRQR  292 (935)
T ss_pred             cCCCCcchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999875

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2e-73  Score=520.78  Aligned_cols=255  Identities=42%  Similarity=0.708  Sum_probs=245.5

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHH
Q 024116            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (272)
Q Consensus         4 ~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~   83 (272)
                      +.|++|+|++|++|+||+|..|++.|+++|+++||+++|+.||+++++++|.+.|++||+|+++|||+||+|||++++++
T Consensus        29 ~~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~  108 (283)
T PRK14192         29 KTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDER  108 (283)
T ss_pred             ccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHH
Confidence            44889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024116           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (272)
Q Consensus        84 ~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V  163 (272)
                      +++++|+|+|||||+|+.|.|+++.+  .+.|.|||+.|++++|++|+++++||+|+|+|+|+.||||++++|+++||+|
T Consensus       109 ~~ld~I~~aKDVdg~n~~n~G~l~~~--~~~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatV  186 (283)
T PRK14192        109 ACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATV  186 (283)
T ss_pred             HHHhccCHHHhcCCCCccccCccccC--CCcccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEE
Confidence            99999999999999999999999876  5779999999999999999999999999999999988999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEec
Q 024116          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT  243 (272)
Q Consensus       164 ~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~t  243 (272)
                      ++|||+++++.+.+++|||||+|||+|++++.+|+++|++|+|+|++|.+          ++++|||||+++.++++++|
T Consensus       187 tv~~~~t~~L~~~~~~aDIvI~AtG~~~~v~~~~lk~gavViDvg~n~~~----------~~~~GDvd~~~~~~~a~~it  256 (283)
T PRK14192        187 TICHSRTQNLPELVKQADIIVGAVGKPELIKKDWIKQGAVVVDAGFHPRD----------GGGVGDIELQGIEEIASAYT  256 (283)
T ss_pred             EEEeCCchhHHHHhccCCEEEEccCCCCcCCHHHcCCCCEEEEEEEeecC----------CCCcccccHHHhhccceEeC
Confidence            99999999999999999999999999999999999999999999999965          35899999999999999999


Q ss_pred             cCCCcccHHHHHHHHHHHHHHHHHHhC
Q 024116          244 PVPGGVGPMTVAMLLSNTLDSAKRAYG  270 (272)
Q Consensus       244 pvpGGvGp~T~amL~~n~v~a~~~~~~  270 (272)
                      ||||||||+|++|||+|+++++++.+|
T Consensus       257 PvPGGVGp~T~a~L~~n~~~~~~~~~~  283 (283)
T PRK14192        257 PVPGGVGPMTINTLIRQTVEAAEKALG  283 (283)
T ss_pred             CCCCcChHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999998775

>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism]

Probab=100.00  E-value=5.9e-71  Score=489.31  Aligned_cols=267  Identities=60%  Similarity=0.933  Sum_probs=253.5

Q ss_pred             CCCCCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCC
Q 024116            1 MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHL   80 (272)
Q Consensus         1 ~~~~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~   80 (272)
                      |++..|..|+|+.++||++|+|..|+..++++|+++||.+..+.||++.++++++..|.++|+|++||||+||+|+|.|+
T Consensus        31 ~~~~~g~~P~L~~~lvg~~pas~~Ya~~k~kac~~vGi~s~~~~l~~~~~~~~l~~~i~~~N~d~sV~GilV~~pv~~h~  110 (309)
T KOG0089|consen   31 MKESNGKVPGLVGFLVGEDPASQMYATNKTKACEEVGIKSFQYELPESESEDELESAIAEANNDPSVHGILVQLPVPQHI  110 (309)
T ss_pred             HHhcCCCCCceeEEEeCCCcchHHHHHHHHHHHHHhhhcccccccccccCHHHHHHHHHHhcCCCceeeEEEEeeccccc
Confidence            56677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhC-
Q 024116           81 DEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH-  159 (272)
Q Consensus        81 ~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~-  159 (272)
                      +++.++++++|+|||||+|+.|.|+|...+..+.|+||||.|++++|+++++.+.||+++|+|||.+||+|+|++|+.. 
T Consensus       111 ~eq~i~n~Vs~eKDVDgfh~~Nigrl~ld~~~~~~lPcTP~gv~eiL~r~gI~~~GKn~VVigRS~iVg~P~A~LL~~dG  190 (309)
T KOG0089|consen  111 QEQYILNAVSPEKDVDGFHPLNIGRLALDGREPLFLPCTPLGVVEILERTGIETYGKNAVVIGRSKIVGMPLALLLHNDG  190 (309)
T ss_pred             cHHHHHhhcCcccccccccccchhhhccccccccccCCchHHHHHHHHHhCCeecCceEEEEcccccccchHHHHHhhcC
Confidence            9999999999999999999999999988766778999999999999999999999999999999999999999999999 


Q ss_pred             -------CCEEEEEeCCCC--CHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEeccc
Q 024116          160 -------HATVSIVHALTK--NPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDV  230 (272)
Q Consensus       160 -------ga~V~v~~~~t~--~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdv  230 (272)
                             .++|+++||.|+  +++.++++|||+|+|+|.|++++.+|+++|+.++|+|+|+.+   |+.+....+|+||+
T Consensus       191 ~~~~~~~datVti~hr~t~~~~lk~ht~~adivi~a~g~p~li~~d~Ik~Ga~vidvgin~v~---dp~~a~~~klvgdv  267 (309)
T KOG0089|consen  191 AHVYSVDDATVTIFHRYTSKPQLKHHTRDADIVISAVGIPNLITSDMIKPGAAVIDVGINRVH---DPSTAVGIKLVGDV  267 (309)
T ss_pred             CcccccCcceEEEEEcCCCchhHHHHHHhcceeehhcCCCcccccceeecCceeEecCCCccc---ccccceeeEEeeec
Confidence                   578999999985  468999999999999999999999999999999999999998   67654357899999


Q ss_pred             chhhhhhhceEeccCCCcccHHHHHHHHHHHHHHHHHHhC
Q 024116          231 CYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG  270 (272)
Q Consensus       231 d~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~  270 (272)
                      ||+++..+++++||||||+||+|++|||+|+++++++.+.
T Consensus       268 dFe~~~~kag~itpVPggvGpmTiAMLl~Ntl~~ak~v~~  307 (309)
T KOG0089|consen  268 DFEEASKKAGAITPVPGGVGPMTIAMLLRNTLRAAKRVFL  307 (309)
T ss_pred             cHHHhhhhcCccccCCCCCCchhHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999997654

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=100.00  E-value=3.2e-51  Score=345.32  Aligned_cols=160  Identities=54%  Similarity=0.864  Sum_probs=138.8

Q ss_pred             ccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhhhcC
Q 024116           99 HPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITS  178 (272)
Q Consensus        99 ~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l~~~l~  178 (272)
                      ||+|.|+|+.+  ++.|+||||+|++++|++|+++++||+|+|||+|..||+|++++|.++||+|++||++|++++++++
T Consensus         1 hp~N~g~l~~~--~~~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~   78 (160)
T PF02882_consen    1 HPLNLGRLVSG--QPGFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITR   78 (160)
T ss_dssp             SHHHHHHHHTT--TTSS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHT
T ss_pred             CcHhHHHHhCC--CCCCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceee
Confidence            78999999987  7899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEeccCCCcccHHHHHHHH
Q 024116          179 EADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL  258 (272)
Q Consensus       179 ~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL~  258 (272)
                      +|||||+|+|+|++++++|+|+|++|||+|+++..        .+++++|||||+++.++++++|||||||||+|++|||
T Consensus        79 ~ADIVVsa~G~~~~i~~~~ik~gavVIDvG~~~~~--------~~~~~~GDv~~~~~~~~a~~itPvPgGVGplT~a~L~  150 (160)
T PF02882_consen   79 RADIVVSAVGKPNLIKADWIKPGAVVIDVGINYVP--------GDGKLVGDVDFESVKEKASAITPVPGGVGPLTVAMLM  150 (160)
T ss_dssp             TSSEEEE-SSSTT-B-GGGS-TTEEEEE--CEEET--------TTTEEEESB-HHHHHTTCSEEE-SSSSCHHHHHHHHH
T ss_pred             eccEEeeeeccccccccccccCCcEEEecCCcccc--------ccceeeecccHHHhhccceEEeeCCCCccHHHHHHHH
Confidence            99999999999999999999999999999999972        1379999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 024116          259 SNTLDSAKRA  268 (272)
Q Consensus       259 ~n~v~a~~~~  268 (272)
                      +|++++++++
T Consensus       151 ~N~v~a~~~~  160 (160)
T PF02882_consen  151 KNLVKAAKRQ  160 (160)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999874

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=100.00  E-value=5.4e-45  Score=314.18  Aligned_cols=158  Identities=31%  Similarity=0.441  Sum_probs=143.1

Q ss_pred             cccccCccccccccccccCCC-------CCccccCCHHHHHHHHHHhCC---------CCccceEEEEcCCcccHHHHHH
Q 024116           91 LEKDVDGFHPLNIGNLAMRGR-------EPLFIPCTPKGCIELLIRSGV---------EIMGKNAVVIGRSNIVGLPTSL  154 (272)
Q Consensus        91 p~KDvdg~~~~n~g~l~~~~~-------~~~~~p~Ta~g~~~~l~~~~~---------~l~gk~v~ViG~g~~vG~~la~  154 (272)
                      |+|||||+|+.|.|+|+.+..       +++|+||||+|++++|++|++         +++||+|+|||||.+||+|+++
T Consensus         1 P~KDVDGl~~~n~g~l~~~~~~~~~~~~~~~~~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~   80 (197)
T cd01079           1 PHKDVEGLSHKYIFNLYHNIRFLDPENRKKSILPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAA   80 (197)
T ss_pred             CCCCcCCCCHHHHHHHhcCCccccccccCCCccCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHH
Confidence            689999999999999986631       157999999999999999977         8999999999999999999999


Q ss_pred             HHHhCCCEEEEE---------------eCCC--CC----HhhhcCCCcEEEEecCCCcc-ccCCCcCCCcEEEEeeeCCC
Q 024116          155 LLQRHHATVSIV---------------HALT--KN----PEQITSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCPV  212 (272)
Q Consensus       155 ~L~~~ga~V~v~---------------~~~t--~~----l~~~l~~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~~~~  212 (272)
                      +|+++||+|++|               |++|  ++    +.+.+++|||||+|+|+|++ +++||+|+|++|||+|++. 
T Consensus        81 lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~~d~ik~GavVIDVGi~~-  159 (197)
T cd01079          81 LLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVPTELLKDGAICINFASIK-  159 (197)
T ss_pred             HHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCCCCccCHHHcCCCcEEEEcCCCc-
Confidence            999999999999               5665  35    78999999999999999999 9999999999999999863 


Q ss_pred             CCCCCCCCCCCceEecccchhhhhhhceEeccCCCcccHHHHHHHHHHHHHHHHHHh
Q 024116          213 DVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY  269 (272)
Q Consensus       213 ~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~  269 (272)
                                      |+| +++.++++++|||   |||+|++|||+|++++++++.
T Consensus       160 ----------------dvd-~~v~~~as~iTPv---VGpvTva~L~~Nlv~~~~~~~  196 (197)
T cd01079         160 ----------------NFE-PSVKEKASIYVPS---IGKVTIAMLLRNLLRLYHNQH  196 (197)
T ss_pred             ----------------Ccc-HhHHhhcCEeCCC---cCHHHHHHHHHHHHHHHHHhc
Confidence                            344 6678899999998   999999999999999998764

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=100.00  E-value=4.3e-41  Score=286.32  Aligned_cols=168  Identities=58%  Similarity=0.918  Sum_probs=157.1

Q ss_pred             cccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116           91 LEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus        91 p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      |+|||||++..|.|+++.+  ...|+|||+.+++++++++..+++||+|+|||+|+++|++++.+|.++|++|++++|++
T Consensus         1 ~~kdvdg~~~~~~~~~~~~--~~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~   78 (168)
T cd01080           1 PEKDVDGLHPVNLGRLALG--RPGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT   78 (168)
T ss_pred             CCccccCCCccchhhHhcC--CCCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence            6899999999999999865  57899999999999999999999999999999999889999999999999999999999


Q ss_pred             CCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEeccCCCccc
Q 024116          171 KNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVG  250 (272)
Q Consensus       171 ~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpGGvG  250 (272)
                      +++.+.+++||+||+|||+|+++++++++++.++||++.+|+.   |.+   ++|++||+|++.+.+++.++||+|||||
T Consensus        79 ~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~~viIDla~prdv---d~~---~~~~~G~~d~~~~~~~~~~~~~~pggvg  152 (168)
T cd01080          79 KNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGINRVP---DKS---GGKLVGDVDFESAKEKASAITPVPGGVG  152 (168)
T ss_pred             hhHHHHHhhCCEEEEcCCCCceecHHHccCCeEEEEccCCCcc---ccc---CCCeeCCcCHHHHHhhccCcCCCCCcCh
Confidence            9999999999999999999999999999999999999999975   321   3689999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 024116          251 PMTVAMLLSNTLDSAK  266 (272)
Q Consensus       251 p~T~amL~~n~v~a~~  266 (272)
                      |+|+++||+|++++++
T Consensus       153 p~t~a~l~~n~~~~~~  168 (168)
T cd01080         153 PMTVAMLMKNTVEAAK  168 (168)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            9999999999998763

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=100.00  E-value=1.2e-39  Score=269.56  Aligned_cols=137  Identities=36%  Similarity=0.555  Sum_probs=128.9

Q ss_pred             CCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhhhcCCCcEEEEecCCC
Q 024116          111 REPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       111 ~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l~~~l~~ADIVIsa~g~p  190 (272)
                      .++.|+||||+|++++|++|+++++||+|+|+|||..+|+|++.+|.++|++|++||++|+++++++++|||||+|+|+|
T Consensus         3 ~~~~~~p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~   82 (140)
T cd05212           3 CTPLFVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKP   82 (140)
T ss_pred             CCCcccccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCC
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEeccCCCcccHHHHHHHHHHHHHHH
Q 024116          191 NLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA  265 (272)
Q Consensus       191 ~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~  265 (272)
                      ++++++|+|+|++|+|+|+++..                  |+++.++++++|||||||||+|++|||+|+++++
T Consensus        83 ~~i~~~~ikpGa~Vidvg~~~~~------------------~~~~~~~a~~~tPvpgGVGp~T~a~L~~n~~~~~  139 (140)
T cd05212          83 EKVPTEWIKPGATVINCSPTKLS------------------GDDVKESASLYVPMTGGVGKLTVAMRMQNMVRSV  139 (140)
T ss_pred             CccCHHHcCCCCEEEEcCCCccc------------------chhhHhhceEEcCCCCCchHHHHHHHHHHHHHhc
Confidence            99999999999999999987621                  3566788999999999999999999999999875

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=99.95  E-value=1.3e-27  Score=217.93  Aligned_cols=230  Identities=17%  Similarity=0.191  Sum_probs=182.0

Q ss_pred             CCCCCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCC
Q 024116            1 MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHL   80 (272)
Q Consensus         1 ~~~~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~   80 (272)
                      |....+..++|..=++| +|-|++-. .|+.+|+++|+++.|..|+    .++|.+.++.++. .++.|++||+|||+  
T Consensus         1 ~~~~~~~~~~~~~gliG-~P~~~Sp~-ihn~~f~~~gl~~~Y~~~~----~~~l~~~~~~l~~-~~~~G~nVT~P~K~--   71 (272)
T PRK12550          1 MTNMINKDTQLCISLAA-RPSNFGTR-FHNYLYEALGLNFLYKAFT----TTDLTAAIGGVRA-LGIRGCAVSMPFKE--   71 (272)
T ss_pred             CCCcCCCCceEEEEEEc-cchhcCHH-HHHHHHHHcCCCcEEEecC----HhHHHHHHHHHHh-cCCCEEEECcCCHH--
Confidence            44555667787666778 44677766 9999999999999999995    3678889998877 47999999999998  


Q ss_pred             CHHHHHhcCCc-ccccCccc-ccc-ccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHH
Q 024116           81 DEGKILDAVSL-EKDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ  157 (272)
Q Consensus        81 ~~~~i~~~i~p-~KDvdg~~-~~n-~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~  157 (272)
                      ...++++.++| .+.+.+++ .++ .|++. |+|+|+      .|+++.|++.+.+ .+|+++|+|+||+ +|+++..|.
T Consensus        72 ~~~~~lD~l~~~A~~iGAVNTi~~~~g~l~-G~NTD~------~Gf~~~L~~~~~~-~~~~vlilGaGGa-arAi~~aL~  142 (272)
T PRK12550         72 AVIPLVDELDPSAQAIESVNTIVNTDGHLK-AYNTDY------IAIAKLLASYQVP-PDLVVALRGSGGM-AKAVAAALR  142 (272)
T ss_pred             HHHHHhhcCCHHHHHhCCeeEEEeeCCEEE-EEecCH------HHHHHHHHhcCCC-CCCeEEEECCcHH-HHHHHHHHH
Confidence            66888999999 88888773 334 34444 555554      9999999988775 4689999999998 999999999


Q ss_pred             hCCC-EEEEEeCCCCC---Hh--------hhc--CCCcEEEEecC---CCc------cccCCCcCCCcEEEEeeeCCCCC
Q 024116          158 RHHA-TVSIVHALTKN---PE--------QIT--SEADIVIAAAG---VAN------LVRGSWLKPGAVVLDVGTCPVDV  214 (272)
Q Consensus       158 ~~ga-~V~v~~~~t~~---l~--------~~l--~~ADIVIsa~g---~p~------~i~~~~vk~g~vviDig~~~~~~  214 (272)
                      ++|+ +|+|++|+.+.   +.        +.+  ..+|+||+||+   .++      .++.++++++.+|+|+.|+|.+ 
T Consensus       143 ~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~D~vY~P~~-  221 (272)
T PRK12550        143 DAGFTDGTIVARNEKTGKALAELYGYEWRPDLGGIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVVALPAE-  221 (272)
T ss_pred             HCCCCEEEEEeCCHHHHHHHHHHhCCcchhhcccccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEEEeecCCcc-
Confidence            9997 69999997521   11        112  45899999986   221      2667788999999999999976 


Q ss_pred             CCCCCCCCCceEecccchhhhhhhceEeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          215 SVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       215 ~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                               |+|+     +. +++.++  ++-+|.+     ||++|++++++.|+|.
T Consensus       222 ---------T~ll-----~~-A~~~G~--~~i~Gl~-----MLi~Qa~~~f~lwtg~  256 (272)
T PRK12550        222 ---------TPLI-----RY-ARARGK--TVITGAE-----VIALQAVEQFVLYTGV  256 (272)
T ss_pred             ---------CHHH-----HH-HHHCcC--eEeCCHH-----HHHHHHHHHHHHHhCC
Confidence                     6777     55 667787  5667887     9999999999999985

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=99.95  E-value=1.7e-27  Score=218.42  Aligned_cols=225  Identities=16%  Similarity=0.159  Sum_probs=179.3

Q ss_pred             EEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCC---CCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcC
Q 024116           13 VILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADG---CTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAV   89 (272)
Q Consensus        13 ii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~---~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i   89 (272)
                      .-.+|+.-+...-=..|+.+|+++|+++.|..|+..   +++++|.+.++.+.. .++.|++||+|||+  ...++++.+
T Consensus         8 ~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~v~~~~l~~~~~~l~~-~~~~G~nVTiP~K~--~v~~~~D~~   84 (284)
T PRK12549          8 AGLIGAGIQASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAER-MGFAGLNITHPCKQ--AVIPHLDEL   84 (284)
T ss_pred             EEEECCCcccccCHHHHHHHHHHcCCCeEEEEEeeccccCCHHHHHHHHHHHHh-cCCCEEEECcCCHH--HHHHHhccC
Confidence            345675433334456899999999999999999753   347889999999976 48999999999998  667888899


Q ss_pred             Cc-ccccCccc-ccc-ccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEE
Q 024116           90 SL-EKDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSI  165 (272)
Q Consensus        90 ~p-~KDvdg~~-~~n-~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v  165 (272)
                      ++ .+.+.+++ .++ .|++. |+|+|+      .|+++.|+....++++|+|+|+|+|++ |++++..|...|+ +|++
T Consensus        85 ~~~A~~iGAvNTv~~~~g~l~-G~NTD~------~G~~~~l~~~~~~~~~k~vlIlGaGGa-araia~aL~~~G~~~I~I  156 (284)
T PRK12549         85 SDDARALGAVNTVVFRDGRRI-GHNTDW------SGFAESFRRGLPDASLERVVQLGAGGA-GAAVAHALLTLGVERLTI  156 (284)
T ss_pred             CHHHHHhCCceEEEecCCEEE-EEcCCH------HHHHHHHHhhccCccCCEEEEECCcHH-HHHHHHHHHHcCCCEEEE
Confidence            98 88888873 444 34554 655555      999999998777899999999999997 9999999999997 8999


Q ss_pred             EeCCCC----------------------CHhhhcCCCcEEEEecCC---C--c-cccCCCcCCCcEEEEeeeCCCCCCCC
Q 024116          166 VHALTK----------------------NPEQITSEADIVIAAAGV---A--N-LVRGSWLKPGAVVLDVGTCPVDVSVD  217 (272)
Q Consensus       166 ~~~~t~----------------------~l~~~l~~ADIVIsa~g~---p--~-~i~~~~vk~g~vviDig~~~~~~~~~  217 (272)
                      ++|+..                      ++.+.++++|+||++|+.   +  . .++.++++++.+|+|+.|+|.+    
T Consensus       157 ~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~----  232 (284)
T PRK12549        157 FDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLE----  232 (284)
T ss_pred             ECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCC----
Confidence            998731                      223356789999999752   2  2 2667789999999999999976    


Q ss_pred             CCCCCCceEecccchhhhhhhceEeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          218 PSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       218 ~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                            |+|+     +. +++.++  ++-+|.+     ||++|++.+++.|+|.
T Consensus       233 ------T~ll-----~~-A~~~G~--~~~~G~~-----ML~~Qa~~~f~~wtg~  267 (284)
T PRK12549        233 ------TELL-----RA-ARALGC--RTLDGGG-----MAVFQAVDAFELFTGR  267 (284)
T ss_pred             ------CHHH-----HH-HHHCCC--eEecCHH-----HHHHHHHHHHHHhcCC
Confidence                  6777     55 677787  5667777     9999999999999985

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=99.95  E-value=4.2e-27  Score=216.11  Aligned_cols=221  Identities=21%  Similarity=0.200  Sum_probs=174.9

Q ss_pred             EeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-cc
Q 024116           15 LVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EK   93 (272)
Q Consensus        15 ~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~K   93 (272)
                      ++|+--+...-=..|+.+|+++|+++.|..|+.  ++++|.+.++.++.. ++.|++||+|||.  ...++++.+++ .+
T Consensus        12 liG~Pi~hSlSP~ihn~~f~~~gl~~~Y~~~~v--~~~~l~~~~~~l~~~-~~~G~nVTiP~K~--~~~~~~D~l~~~A~   86 (288)
T PRK12749         12 LMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEV--DNDSFPGAIEGLKAL-KMRGTGVSMPNKQ--LACEYVDELTPAAK   86 (288)
T ss_pred             EECCCcccccCHHHHHHHHHHcCCCeEEEEEec--CHHHHHHHHHHHHhc-CCCEEEECcCCHH--HHHHHhccCCHHHH
Confidence            456432222334589999999999999999955  778999999999864 7999999999998  66888899998 88


Q ss_pred             ccCccc-ccc-ccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC
Q 024116           94 DVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT  170 (272)
Q Consensus        94 Dvdg~~-~~n-~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t  170 (272)
                      .+.+++ .++ .|++. |+|+|+      .|+++.|++.+.+++||+++|+|+||+ +|+++..|..+|+ +|+|++|+.
T Consensus        87 ~iGAVNTv~~~~g~l~-G~NTD~------~Gf~~~l~~~~~~~~~k~vlvlGaGGa-arAi~~~l~~~g~~~i~i~nRt~  158 (288)
T PRK12749         87 LVGAINTIVNDDGYLR-GYNTDG------TGHIRAIKESGFDIKGKTMVLLGAGGA-STAIGAQGAIEGLKEIKLFNRRD  158 (288)
T ss_pred             HhCceeEEEccCCEEE-EEecCH------HHHHHHHHhcCCCcCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCCc
Confidence            888874 333 45554 655555      999999999999999999999999998 9999999999996 899999973


Q ss_pred             C------CH-----------------------hhhcCCCcEEEEecCC---Cc----c-ccCCCcCCCcEEEEeeeCCCC
Q 024116          171 K------NP-----------------------EQITSEADIVIAAAGV---AN----L-VRGSWLKPGAVVLDVGTCPVD  213 (272)
Q Consensus       171 ~------~l-----------------------~~~l~~ADIVIsa~g~---p~----~-i~~~~vk~g~vviDig~~~~~  213 (272)
                      .      ++                       .+.++++|+||++|+.   |+    + ++.+.++++.+|+|+.|+|.+
T Consensus       159 ~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~  238 (288)
T PRK12749        159 EFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHM  238 (288)
T ss_pred             cHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHHCCCCCEEEEecCCCcc
Confidence            1      00                       1134578999998863   32    1 234567889999999999976


Q ss_pred             CCCCCCCCCCceEecccchhhhhhhceEeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          214 VSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       214 ~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                                |+|+     +. +++.++  ++-+|.+     ||++|+++++|.|+|.
T Consensus       239 ----------T~ll-----~~-A~~~G~--~~~~Gl~-----ML~~Qa~~~f~lwtg~  273 (288)
T PRK12749        239 ----------TKLL-----QQ-AQQAGC--KTIDGYG-----MLLWQGAEQFTLWTGK  273 (288)
T ss_pred             ----------CHHH-----HH-HHHCCC--eEECCHH-----HHHHHHHHHHHHhcCC
Confidence                      6787     65 667787  5566777     9999999999999985

>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=99.95  E-value=1.5e-27  Score=191.90  Aligned_cols=91  Identities=51%  Similarity=0.820  Sum_probs=80.3

Q ss_pred             CCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHH
Q 024116            6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKI   85 (272)
Q Consensus         6 ~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i   85 (272)
                      |++|+||+|++|+||+|..|++++.+.|+++||+++.+.||++++++++++.|++||+|++||||+||+|||+|+++.++
T Consensus        27 ~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~V~GIlvq~PLP~~i~~~~i  106 (117)
T PF00763_consen   27 GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDPSVHGILVQLPLPKHIDERKI  106 (117)
T ss_dssp             T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-TT-SEEEEESSSSTTSHHHHH
T ss_pred             CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCccHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCcccccC
Q 024116           86 LDAVSLEKDVD   96 (272)
Q Consensus        86 ~~~i~p~KDvd   96 (272)
                      +++|+|.||||
T Consensus       107 ~~~I~p~KDVD  117 (117)
T PF00763_consen  107 LEAIDPEKDVD  117 (117)
T ss_dssp             HHTS-GGGBTT
T ss_pred             HhccCcccCCC
Confidence            99999999997

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=99.95  E-value=5.8e-27  Score=214.15  Aligned_cols=210  Identities=22%  Similarity=0.319  Sum_probs=173.3

Q ss_pred             HHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-ccccCcc-ccccc
Q 024116           26 VRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EKDVDGF-HPLNI  103 (272)
Q Consensus        26 ~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~KDvdg~-~~~n~  103 (272)
                      =..|+.+++++|+++.|..|..  ..++|...++.+.+ .++.|+||++|+|+  ...++++.+++ ++-+.++ |.++.
T Consensus        22 P~~Hn~~~~~lGl~~~Y~a~~v--~~~~l~~~v~~~~~-~g~~G~NVTiP~Ke--~~~~~lD~l~~~A~~iGAVNTl~~~   96 (283)
T COG0169          22 PRMHNAAFRALGLDYVYLAFEV--PPEDLPEAVSGIRA-LGFRGLNVTIPFKE--AALPLLDELSPRARLIGAVNTLVRE   96 (283)
T ss_pred             HHHHHHHHHHcCCCceEEEeec--CHHHHHHHHHHHHh-cCCCeeEECCccHH--HHHHHHhcCCHHHHHhCCceEEEEc
Confidence            3489999999999999999966  68999999999994 79999999999998  66889999999 8888887 55564


Q ss_pred             --cccccCCCCCccccCCHHHHHHHHHHhC--CCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCCC---H--
Q 024116          104 --GNLAMRGREPLFIPCTPKGCIELLIRSG--VEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTKN---P--  173 (272)
Q Consensus       104 --g~l~~~~~~~~~~p~Ta~g~~~~l~~~~--~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t~~---l--  173 (272)
                        |++. |+|+|+      .|+.+.|++++  .+.+|++|+|+|+||+ +|+++..|++.|+ +++|+||+.+.   |  
T Consensus        97 ~~g~l~-G~NTD~------~G~~~~L~~~~~~~~~~~~~vlilGAGGA-arAv~~aL~~~g~~~i~V~NRt~~ra~~La~  168 (283)
T COG0169          97 DDGKLR-GYNTDG------IGFLRALKEFGLPVDVTGKRVLILGAGGA-ARAVAFALAEAGAKRITVVNRTRERAEELAD  168 (283)
T ss_pred             cCCEEE-EEcCCH------HHHHHHHHhcCCCcccCCCEEEEECCcHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence              5665 776666      99999999987  5667999999999998 9999999999995 89999997421   1  


Q ss_pred             --------------h--hhcCCCcEEEEecCC---Cc----cccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEeccc
Q 024116          174 --------------E--QITSEADIVIAAAGV---AN----LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDV  230 (272)
Q Consensus       174 --------------~--~~l~~ADIVIsa~g~---p~----~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdv  230 (272)
                                    .  +...++|+||++|+.   ++    +++.+.++++.+++|+.|+|.+          |+|+   
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~----------TplL---  235 (283)
T COG0169         169 LFGELGAAVEAAALADLEGLEEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVYNPLE----------TPLL---  235 (283)
T ss_pred             HhhhcccccccccccccccccccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEeccCCCC----------CHHH---
Confidence                          1  111258999999972   32    3556788999999999999986          6788   


Q ss_pred             chhhhhhhceEeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          231 CYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       231 d~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                        +. +++.++.  +-.|.|     ||++|.+++|+.|+|.
T Consensus       236 --~~-A~~~G~~--~idGl~-----Mlv~Qaa~aF~lwtg~  266 (283)
T COG0169         236 --RE-ARAQGAK--TIDGLG-----MLVHQAAEAFELWTGV  266 (283)
T ss_pred             --HH-HHHcCCe--EECcHH-----HHHHHHHHHHHHHhCC
Confidence              65 6666664  556777     9999999999999986

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=99.95  E-value=1.4e-26  Score=212.74  Aligned_cols=222  Identities=21%  Similarity=0.252  Sum_probs=177.1

Q ss_pred             EEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-c
Q 024116           14 ILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E   92 (272)
Q Consensus        14 i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~   92 (272)
                      -++|+.-+...-=..|+.+|+++|+++.|..|+.  ++++|.+.++.++. .++.|++||+|||.  ...++++.++| .
T Consensus        13 ~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v--~~~~l~~~~~~~~~-~~~~G~nVT~P~K~--~v~~~ld~~~~~A   87 (289)
T PRK12548         13 GLIGSPVGHSGSPAMYNYSFQKAGLDYAYLAFDI--PVDKVPDAIKAIKT-FNMRGANVTMPCKS--EAAKYMDELSPAA   87 (289)
T ss_pred             EEEcCCcccccCHHHHHHHHHHcCCCEEEEEEec--CHHHHHHHHHHHHH-CCCCEEEECccCHH--HHHHHhhcCCHHH
Confidence            3567543333334589999999999999999965  67889999999986 48999999999998  66888999998 8


Q ss_pred             cccCccc-ccc-ccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCC
Q 024116           93 KDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHAL  169 (272)
Q Consensus        93 KDvdg~~-~~n-~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~-V~v~~~~  169 (272)
                      +.+.+++ .++ .|++. |+|+|+      .|+++.|++.+.+++||+++|+|+||+ |++++..|+..|++ |++++|+
T Consensus        88 ~~iGavNTi~~~~g~l~-G~NTD~------~G~~~~l~~~~~~~~~k~vlI~GAGGa-grAia~~La~~G~~~V~I~~R~  159 (289)
T PRK12548         88 RIIGAVNTIVNDDGKLT-GHITDG------LGFVRNLREHGVDVKGKKLTVIGAGGA-ATAIQVQCALDGAKEITIFNIK  159 (289)
T ss_pred             HHhCceeEEEeECCEEE-EEecCH------HHHHHHHHhcCCCcCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCC
Confidence            8887773 334 35554 665555      999999998888899999999999997 99999999999985 9999987


Q ss_pred             C---CC---------------------------HhhhcCCCcEEEEecC---CCc----cc-cCCCcCCCcEEEEeeeCC
Q 024116          170 T---KN---------------------------PEQITSEADIVIAAAG---VAN----LV-RGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       170 t---~~---------------------------l~~~l~~ADIVIsa~g---~p~----~i-~~~~vk~g~vviDig~~~  211 (272)
                      .   +.                           +.+.++.+|+||++|+   .|+    .+ +.+++.++.+|+|+.|+|
T Consensus       160 ~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P  239 (289)
T PRK12548        160 DDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVFRKDLVVADTVYNP  239 (289)
T ss_pred             chHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCC
Confidence            3   10                           1123456899998886   232    24 456788899999999999


Q ss_pred             CCCCCCCCCCCCceEecccchhhhhhhceEeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          212 VDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       212 ~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                      .+          |+|+     +. +++.++  ++-+|.+     ||++|+++++++|+|.
T Consensus       240 ~~----------T~ll-----~~-A~~~G~--~~~~G~~-----ML~~Qa~~~f~lwtg~  276 (289)
T PRK12548        240 KK----------TKLL-----ED-AEAAGC--KTVGGLG-----MLLWQGAEAYKLYTGK  276 (289)
T ss_pred             CC----------CHHH-----HH-HHHCCC--eeeCcHH-----HHHHHHHHHHHHhcCC
Confidence            76          6777     55 677787  6777888     9999999999999985

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=99.94  E-value=9.2e-27  Score=212.61  Aligned_cols=220  Identities=17%  Similarity=0.249  Sum_probs=175.7

Q ss_pred             EeCCCcchH-HHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-c
Q 024116           15 LVGERRDSQ-TYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E   92 (272)
Q Consensus        15 ~vg~~~~s~-~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~   92 (272)
                      .+| +|-++ .-=..|+.+|+++|+++.|..|+.  ++++|.+.++.+... ++.|++||+|||.  +..++++.++| .
T Consensus        10 viG-~pi~hS~SP~~hn~~~~~~gl~~~y~~~~v--~~~~l~~~~~~~~~~-~~~G~nVT~P~K~--~~~~~~d~~~~~A   83 (278)
T PRK00258         10 VIG-NPIAHSKSPLIHNAAFKQLGLDGVYLAILV--PPEDLEDAVKGFFAL-GGRGANVTVPFKE--AAFALADELSERA   83 (278)
T ss_pred             EEC-CchhcccCHHHHHHHHHHcCCCcEEEEEec--CHHHHHHHHHHHHhC-CCCEEEECcCCHH--HHHHHhhcCCHHH
Confidence            456 34322 334478999999999999999954  778899999999875 7999999999998  66888999999 8


Q ss_pred             cccCccc-ccc-ccccccCCCCCccccCCHHHHHHHHHH-hCCCCccceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeC
Q 024116           93 KDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHA  168 (272)
Q Consensus        93 KDvdg~~-~~n-~g~l~~~~~~~~~~p~Ta~g~~~~l~~-~~~~l~gk~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~  168 (272)
                      +.+.+++ .++ .|++. |+|+|      ..|+++.|++ .+.++++|+|+|+|+|++ |++++..|..+| ++|++++|
T Consensus        84 ~~igavNtv~~~~g~l~-G~NTD------~~G~~~~l~~~~~~~~~~k~vlVlGaGg~-a~ai~~aL~~~g~~~V~v~~R  155 (278)
T PRK00258         84 RLIGAVNTLVLEDGRLI-GDNTD------GIGFVRALEERLGVDLKGKRILILGAGGA-ARAVILPLLDLGVAEITIVNR  155 (278)
T ss_pred             HHhCCceEEEeeCCEEE-EEccc------HHHHHHHHHhccCCCCCCCEEEEEcCcHH-HHHHHHHHHHcCCCEEEEEeC
Confidence            8888774 334 34443 55444      5999999986 577899999999999996 999999999999 69999999


Q ss_pred             CCCC-------------------HhhhcCCCcEEEEecCCCc-------cccCCCcCCCcEEEEeeeCCCCCCCCCCCCC
Q 024116          169 LTKN-------------------PEQITSEADIVIAAAGVAN-------LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEY  222 (272)
Q Consensus       169 ~t~~-------------------l~~~l~~ADIVIsa~g~p~-------~i~~~~vk~g~vviDig~~~~~~~~~~~~~~  222 (272)
                      +.+.                   +.+.+.++|+||++|+...       .+..++++++.+|+|+.|+|.+         
T Consensus       156 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~---------  226 (278)
T PRK00258        156 TVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLP---------  226 (278)
T ss_pred             CHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCC---------
Confidence            7421                   1234578999999997421       2455778999999999999865         


Q ss_pred             CceEecccchhhhhhhceEeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          223 GYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       223 ~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                       |.|+     +. +++.++  ++-+|.+     ||++|++.+++.|+|.
T Consensus       227 -T~ll-----~~-A~~~G~--~~~~G~~-----Ml~~Qa~~~f~~wtg~  261 (278)
T PRK00258        227 -TPFL-----AW-AKAQGA--RTIDGLG-----MLVHQAAEAFELWTGV  261 (278)
T ss_pred             -CHHH-----HH-HHHCcC--eecCCHH-----HHHHHHHHHHHHHcCC
Confidence             6676     55 677787  6777887     9999999999999985

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=99.94  E-value=2.6e-26  Score=210.27  Aligned_cols=226  Identities=16%  Similarity=0.181  Sum_probs=174.1

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcC
Q 024116           10 GLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAV   89 (272)
Q Consensus        10 ~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i   89 (272)
                      +--.-.+|+.-+...-=..|+.+|+++|+++.|+.|+.. +.++|.+.++.+..  ++.|++||+|||.  ...++++.+
T Consensus         5 ~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~-~~~~l~~~~~~~~~--~~~G~nVT~P~K~--~~~~~~d~~   79 (282)
T TIGR01809         5 PKKAFIIGKPIAHSRSPHLHNAGYEILGLPDKTYEFETC-SAEELKEVLSGFGP--QFGGASVTIPLKF--AILRFADEH   79 (282)
T ss_pred             CeEEEEEcCCchhccCHHHHHHHHHHcCCCcEEEeeecC-CHHHHHHHHHhcCC--CCcEEEECCCCHH--HHHHHhhcC
Confidence            333456775433333345899999999999999999642 35789999998843  7999999999998  668888999


Q ss_pred             Cc-ccccCccc-ccc--ccccccCCCCCccccCCHHHHHHHHHHhCC--CCccceEEEEcCCcccHHHHHHHHHhCCC-E
Q 024116           90 SL-EKDVDGFH-PLN--IGNLAMRGREPLFIPCTPKGCIELLIRSGV--EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-T  162 (272)
Q Consensus        90 ~p-~KDvdg~~-~~n--~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~--~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~  162 (272)
                      ++ .|.+.+++ .++  .|++. |+|+|+      .|+++.|++.+.  +++||+|+|||+|++ ||+++..|...|+ +
T Consensus        80 ~~~A~~iGAVNTv~~~~~g~l~-G~NTD~------~G~~~~l~~~~~~~~~~~k~vlvlGaGGa-arai~~aL~~~G~~~  151 (282)
T TIGR01809        80 TDRASLIGSVNTLLRTQNGIWK-GDNTDW------DGIAGALANIGKFEPLAGFRGLVIGAGGT-SRAAVYALASLGVTD  151 (282)
T ss_pred             CHHHHHhCceeEEEEcCCCcEE-EecCCH------HHHHHHHHhhCCccccCCceEEEEcCcHH-HHHHHHHHHHcCCCe
Confidence            98 88888773 333  24454 655555      999999998774  689999999999998 9999999999996 7


Q ss_pred             EEEEeCCCC----------------------CHhhhcCCCcEEEEecCCCccccCCC------------cCCCcEEEEee
Q 024116          163 VSIVHALTK----------------------NPEQITSEADIVIAAAGVANLVRGSW------------LKPGAVVLDVG  208 (272)
Q Consensus       163 V~v~~~~t~----------------------~l~~~l~~ADIVIsa~g~p~~i~~~~------------vk~g~vviDig  208 (272)
                      |+|++|+..                      ++.+.+.++|+||++|+....++.+.            ++++.+++|+.
T Consensus       152 i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~v  231 (282)
T TIGR01809       152 ITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADVPADYVDLFATVPFLLLKRKSSEGIFLDAA  231 (282)
T ss_pred             EEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEEe
Confidence            999998731                      11234577899999998644333322            24578999999


Q ss_pred             eCCCCCCCCCCCCCCceEecccchhhhhhhceEeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          209 TCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       209 ~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                      |+|.+          |.|+     +. ++++++  ++-+|.+     ||++|.+.+|+.|+|.
T Consensus       232 Y~P~~----------T~ll-----~~-A~~~G~--~~~~Gl~-----MLv~Qa~~~f~lwtg~  271 (282)
T TIGR01809       232 YDPWP----------TPLV-----AI-VSAAGW--RVISGLQ-----MLLHQGFAQFEQWTGM  271 (282)
T ss_pred             eCCCC----------CHHH-----HH-HHHCCC--EEECcHH-----HHHHHHHHHHHHHHCC
Confidence            99976          6677     55 666776  5667777     9999999999999985

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=99.94  E-value=1.2e-26  Score=212.72  Aligned_cols=224  Identities=17%  Similarity=0.175  Sum_probs=176.5

Q ss_pred             EeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCC---CCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc
Q 024116           15 LVGERRDSQTYVRNKIKACEEVGIKSIVTEFADG---CTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL   91 (272)
Q Consensus        15 ~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~---~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p   91 (272)
                      ++|+.-+...-=..|+.+|+++|+++.|..|+..   .++++|.+.++.+... ++.|++||+|||.  ...++++.+++
T Consensus         9 liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~~~~~~l~~~~~~~~~~-~~~G~nVT~P~K~--~~~~~lD~l~~   85 (283)
T PRK14027          9 LIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYL-GFNGLNITHPYKQ--AVLPLLDEVSE   85 (283)
T ss_pred             EECCCccccCCHHHHHHHHHHcCCCeEEEEEecccccCCHHHHHHHHHHHHhc-CCCEEEECccCHH--HHHHHhhhCCH
Confidence            4564333333345899999999999999999743   3457899999999774 8999999999998  66889999999


Q ss_pred             -ccccCccccc-c--ccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEE
Q 024116           92 -EKDVDGFHPL-N--IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIV  166 (272)
Q Consensus        92 -~KDvdg~~~~-n--~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~  166 (272)
                       .+.+.+++-+ +  .|++. |+|+|+      .|+++.|++.+.+++||+++|+|+||+ +|+++..|...|+ +++|+
T Consensus        86 ~A~~iGAVNTv~~~~~g~l~-G~NTD~------~Gf~~~L~~~~~~~~~k~vlilGaGGa-arAi~~aL~~~g~~~i~i~  157 (283)
T PRK14027         86 QATQLGAVNTVVIDATGHTT-GHNTDV------SGFGRGMEEGLPNAKLDSVVQVGAGGV-GNAVAYALVTHGVQKLQVA  157 (283)
T ss_pred             HHHHhCCceEEEECCCCcEE-EEcCCH------HHHHHHHHhcCcCcCCCeEEEECCcHH-HHHHHHHHHHCCCCEEEEE
Confidence             8888888433 3  35554 666666      999999987666789999999999998 9999999999996 89999


Q ss_pred             eCCCC---CH---------------------hhhcCCCcEEEEecCC---Cc---cccCCCcCCCcEEEEeeeCCCCCCC
Q 024116          167 HALTK---NP---------------------EQITSEADIVIAAAGV---AN---LVRGSWLKPGAVVLDVGTCPVDVSV  216 (272)
Q Consensus       167 ~~~t~---~l---------------------~~~l~~ADIVIsa~g~---p~---~i~~~~vk~g~vviDig~~~~~~~~  216 (272)
                      +|+..   .|                     .+.+..+|+||++|+.   ++   .++.+.+.++.+|+|+.|+|.+   
T Consensus       158 nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~~~~~~~~~~~~l~~~~~v~D~vY~P~~---  234 (283)
T PRK14027        158 DLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIE---  234 (283)
T ss_pred             cCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCCCCCCCCCCHHHcCCCcEEEEcccCCCC---
Confidence            98731   11                     1234568999988862   22   2555678888999999999976   


Q ss_pred             CCCCCCCceEecccchhhhhhhceEeccCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 024116          217 DPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  272 (272)
Q Consensus       217 ~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~~  272 (272)
                             |+|+     +. +++.++  ++-+|.+     ||++|++++|+.|+|.+
T Consensus       235 -------T~ll-----~~-A~~~G~--~~~~Gl~-----MLv~Qa~~~f~lw~G~~  270 (283)
T PRK14027        235 -------TELL-----KA-ARALGC--ETLDGTR-----MAIHQAVDAFRLFTGLE  270 (283)
T ss_pred             -------CHHH-----HH-HHHCCC--EEEccHH-----HHHHHHHHHHHHHhCCC
Confidence                   6787     55 677787  5667787     99999999999999853

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=99.93  E-value=1.6e-25  Score=203.53  Aligned_cols=210  Identities=20%  Similarity=0.207  Sum_probs=168.5

Q ss_pred             HHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-ccccCcccc-cc-
Q 024116           26 VRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EKDVDGFHP-LN-  102 (272)
Q Consensus        26 ~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~KDvdg~~~-~n-  102 (272)
                      =..|+.+|+++|+++.|..|+.  ++++|.+.++.++.. ++.|++||+|+|+  +..++++.+++ .+.+.+++- ++ 
T Consensus        16 P~~hn~~~~~~g~~~~y~~~~v--~~~~l~~~~~~~~~~-~~~G~nVT~P~K~--~~~~~~d~~~~~A~~~gavNti~~~   90 (270)
T TIGR00507        16 PLIHNAFFKQLGLEGPYIAFLV--PPDDLEDALSGFFAL-GFKGANVTSPFKE--EAFQFLDEIDERAKLAGAVNTLKLE   90 (270)
T ss_pred             HHHHHHHHHHcCCCcEEEEEec--CHHHHHHHHHHHHhc-CCCEEEECcCCHH--HHHHHhhhCCHHHHHhCCceEEEee
Confidence            4589999999999999999965  678899999999874 8999999999998  66788999999 888887743 34 


Q ss_pred             ccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH---------
Q 024116          103 IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP---------  173 (272)
Q Consensus       103 ~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l---------  173 (272)
                      .|++. |+|+      +..|+++.|++.+...++|+++|+|+|++ |++++..|+..|++|++++|+....         
T Consensus        91 ~g~l~-g~NT------D~~G~~~~l~~~~~~~~~k~vliiGaGg~-g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~  162 (270)
T TIGR00507        91 DGKLV-GYNT------DGIGLVSDLERLIPLRPNQRVLIIGAGGA-ARAVALPLLKADCNVIIANRTVSKAEELAERFQR  162 (270)
T ss_pred             CCEEE-EEcC------CHHHHHHHHHhcCCCccCCEEEEEcCcHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhh
Confidence            34554 5544      45999999998777788999999999986 9999999999999999999874211         


Q ss_pred             ---------h-hhcCCCcEEEEecCC---Cc----cccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhh
Q 024116          174 ---------E-QITSEADIVIAAAGV---AN----LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAM  236 (272)
Q Consensus       174 ---------~-~~l~~ADIVIsa~g~---p~----~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~  236 (272)
                               . ....++|+||++|+.   +.    .++.++++++.+|+|+.|+|.+          |.|.     +. +
T Consensus       163 ~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~----------T~ll-----~~-A  226 (270)
T TIGR00507       163 YGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGE----------TPFL-----AE-A  226 (270)
T ss_pred             cCceEEechhhhcccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCC----------CHHH-----HH-H
Confidence                     1 123578999999985   22    2345678899999999999865          5555     44 6


Q ss_pred             hhceEeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          237 RLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       237 ~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                      ++.++  ++-+|.+     ||++|++.+++.|+|.
T Consensus       227 ~~~G~--~~vdG~~-----Ml~~Qa~~~f~~w~g~  254 (270)
T TIGR00507       227 KSLGT--KTIDGLG-----MLVAQAALAFELWTGV  254 (270)
T ss_pred             HHCCC--eeeCCHH-----HHHHHHHHHHHHHcCC
Confidence            66776  5667777     9999999999999985

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=99.90  E-value=1.7e-23  Score=206.64  Aligned_cols=221  Identities=20%  Similarity=0.255  Sum_probs=171.9

Q ss_pred             EEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-c
Q 024116           14 ILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E   92 (272)
Q Consensus        14 i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~   92 (272)
                      -++|+.-+-..-=..|+.+|+++|+++.|..|+.    ++|.+.++.++. +++.|++||+|||.  ...++++.++| +
T Consensus       256 ~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v----~~l~~~~~~l~~-~~~~G~nVTiP~K~--~v~~~lD~~~~~A  328 (529)
T PLN02520        256 GIIGKPVGHSKSPILHNEAFKSVGFNGVYVHLLV----DDLAKFLQTYSS-PDFAGFSCTIPHKE--DALKCCDEVDPIA  328 (529)
T ss_pred             EEEcCCcccccCHHHHHHHHHHCCCCcEEEEeeh----hhHHHHHHHHhh-CCCCEEEECcCCHH--HHHHHhccCCHHH
Confidence            3667433322334589999999999999999965    468788888866 58999999999998  66888899999 8


Q ss_pred             cccCccc-ccc---ccccccCCCCCccccCCHHHHHHHHHHh----------CCCCccceEEEEcCCcccHHHHHHHHHh
Q 024116           93 KDVDGFH-PLN---IGNLAMRGREPLFIPCTPKGCIELLIRS----------GVEIMGKNAVVIGRSNIVGLPTSLLLQR  158 (272)
Q Consensus        93 KDvdg~~-~~n---~g~l~~~~~~~~~~p~Ta~g~~~~l~~~----------~~~l~gk~v~ViG~g~~vG~~la~~L~~  158 (272)
                      +.+.+++ .++   .|++. |+|+|+      .|+++.|++.          +.++++|+++|+|+|++ |++++..|++
T Consensus       329 ~~iGAVNTvv~~~~~g~l~-G~NTD~------~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGa-grAia~~L~~  400 (529)
T PLN02520        329 KSIGAINTIIRRPSDGKLV-GYNTDY------IGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGA-GKALAYGAKE  400 (529)
T ss_pred             HHhCCceEEEEeCCCCEEE-EEcccH------HHHHHHHHhhhcccccccccccCCCCCEEEEECCcHH-HHHHHHHHHH
Confidence            8888874 333   35554 655555      9999999752          45789999999999997 9999999999


Q ss_pred             CCCEEEEEeCCCCC---H--------------hh-hcCCCcEEEEecC---CCc----cccCCCcCCCcEEEEeeeCCCC
Q 024116          159 HHATVSIVHALTKN---P--------------EQ-ITSEADIVIAAAG---VAN----LVRGSWLKPGAVVLDVGTCPVD  213 (272)
Q Consensus       159 ~ga~V~v~~~~t~~---l--------------~~-~l~~ADIVIsa~g---~p~----~i~~~~vk~g~vviDig~~~~~  213 (272)
                      +|++|++++|+.+.   +              .+ ....+|+||++++   .|+    .++.+++++..+|+|+.|+|.+
T Consensus       401 ~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~l~~~~~v~D~vY~P~~  480 (529)
T PLN02520        401 KGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNVDETPISKHALKHYSLVFDAVYTPKI  480 (529)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCCCCCcccHhhCCCCCEEEEeccCCCc
Confidence            99999999986321   1              11 1235789997775   232    2566788889999999999976


Q ss_pred             CCCCCCCCCCceEecccchhhhhhhceEeccCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 024116          214 VSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  272 (272)
Q Consensus       214 ~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~~  272 (272)
                                |.|+     +. ++++++  ++-+|.+     ||++|++.+++.|+|.+
T Consensus       481 ----------T~ll-----~~-A~~~G~--~~~~Gl~-----MLv~Qa~~~f~lwtg~~  516 (529)
T PLN02520        481 ----------TRLL-----RE-AEESGA--IIVSGTE-----MFIRQAYEQFERFTGLP  516 (529)
T ss_pred             ----------CHHH-----HH-HHHCCC--eEeCcHH-----HHHHHHHHHHHHHhCCC
Confidence                      6777     55 677887  5667777     99999999999999863

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=99.89  E-value=9.4e-23  Score=199.13  Aligned_cols=219  Identities=16%  Similarity=0.166  Sum_probs=170.8

Q ss_pred             EEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-c
Q 024116           14 ILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E   92 (272)
Q Consensus        14 i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~   92 (272)
                      -.+|+.-+-..-=..|+.+|+++|+++.|..|+.  +++++.+.++.+.. +++.|++||+|||.  ...++++.+++ +
T Consensus       219 ~liG~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v--~~~~l~~~~~~~~~-~~~~G~nVT~P~K~--~v~~~~d~~~~~A  293 (477)
T PRK09310        219 GLIGDPVDRSISHLSHNPLFSQLSLNCPYIKLPL--TPQELPKFFSTIRD-LPFLGLSVTMPLKT--AVLDFLDKLDPSV  293 (477)
T ss_pred             EEECCCcccccCHHHHHHHHHHcCCCcEEEEeec--CHHHHHHHHHHHHh-CCCCEEEECccCHH--HHHHHhccCCHHH
Confidence            3667543323334579999999999999999965  67789888988876 47999999999997  66788899999 8


Q ss_pred             cccCcccc-cc-ccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116           93 KDVDGFHP-LN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus        93 KDvdg~~~-~n-~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +.+.+++- ++ .|++. |+|+|+      .|+++.|++.+.++++|+++|+|+|++ |++++..|.+.|++|++++|+.
T Consensus       294 ~~iGAVNTv~~~~g~l~-G~NTD~------~G~~~~l~~~~~~~~~k~vlIiGaGgi-G~aia~~L~~~G~~V~i~~R~~  365 (477)
T PRK09310        294 KLCGSCNTLVFRNGKIE-GYNTDG------EGLFSLLKQKNIPLNNQHVAIVGAGGA-AKAIATTLARAGAELLIFNRTK  365 (477)
T ss_pred             HHhCcceEEEeeCCEEE-EEecCH------HHHHHHHHhcCCCcCCCEEEEEcCcHH-HHHHHHHHHHCCCEEEEEeCCH
Confidence            88888743 34 45554 655555      999999999999999999999999986 9999999999999999998864


Q ss_pred             CCHh----------------hhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhh
Q 024116          171 KNPE----------------QITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEE  234 (272)
Q Consensus       171 ~~l~----------------~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~  234 (272)
                      ...+                ..+.++|+||++++..-.+. +.+.  .+|+|+.|+|.+          |.|.     +.
T Consensus       366 ~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~~~~-~~l~--~~v~D~~Y~P~~----------T~ll-----~~  427 (477)
T PRK09310        366 AHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSVTIP-KAFP--PCVVDINTLPKH----------SPYT-----QY  427 (477)
T ss_pred             HHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCCcch-hHHh--hhEEeccCCCCC----------CHHH-----HH
Confidence            2111                11568899999997543333 2333  389999999875          5555     44


Q ss_pred             hhhhceEeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          235 AMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       235 ~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                       +++.++  ++.+|.+     ||++|++++++.|+|.
T Consensus       428 -A~~~G~--~~~~G~~-----Ml~~Qa~~~f~lw~g~  456 (477)
T PRK09310        428 -ARSQGS--SIIYGYE-----MFAEQALLQFRLWFPT  456 (477)
T ss_pred             -HHHCcC--EEECcHH-----HHHHHHHHHHHHHcCC
Confidence             666777  5667777     9999999999999985

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.64  E-value=1e-15  Score=141.27  Aligned_cols=131  Identities=22%  Similarity=0.351  Sum_probs=105.5

Q ss_pred             CCHHH-HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------------CHhhhcCCC
Q 024116          118 CTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------NPEQITSEA  180 (272)
Q Consensus       118 ~Ta~g-~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~----------------~l~~~l~~A  180 (272)
                      +|+++ +...++++++++.|++|+|+|+|.+ |++++..|.+.|++|++++|+..                ++.+.++++
T Consensus       133 ~~aegav~~a~~~~~~~l~g~kvlViG~G~i-G~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~a  211 (296)
T PRK08306        133 PTAEGAIMMAIEHTPITIHGSNVLVLGFGRT-GMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKI  211 (296)
T ss_pred             hHHHHHHHHHHHhCCCCCCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCC
Confidence            35555 5566778889999999999999995 99999999999999999998742                456778999


Q ss_pred             cEEEEecCCCccccCCC---cCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhh---ceEeccCCCcccHHHH
Q 024116          181 DIVIAAAGVANLVRGSW---LKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRL---ASVITPVPGGVGPMTV  254 (272)
Q Consensus       181 DIVIsa~g~p~~i~~~~---vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~---~~~~tpvpGGvGp~T~  254 (272)
                      |+||++++.+ +++.++   ++++++|||++++|                |++||+.+.+.   +.+.+++||+|+|+|.
T Consensus       212 DiVI~t~p~~-~i~~~~l~~~~~g~vIIDla~~p----------------ggtd~~~a~~~Gv~~~~~~~lpg~vap~ta  274 (296)
T PRK08306        212 DIIFNTIPAL-VLTKEVLSKMPPEALIIDLASKP----------------GGTDFEYAEKRGIKALLAPGLPGKVAPKTA  274 (296)
T ss_pred             CEEEECCChh-hhhHHHHHcCCCCcEEEEEccCC----------------CCcCeeehhhCCeEEEEECCCCccCCHHHH
Confidence            9999998643 456554   58899999999876                44666554333   5556899999999999


Q ss_pred             HHHHHHHHHHHH
Q 024116          255 AMLLSNTLDSAK  266 (272)
Q Consensus       255 amL~~n~v~a~~  266 (272)
                      +.++.|.+..+-
T Consensus       275 ~~~~~~~i~~~l  286 (296)
T PRK08306        275 GQILANVLSQLL  286 (296)
T ss_pred             HHHHHHHHHHHH
Confidence            999999987764

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.56  E-value=1.6e-14  Score=132.90  Aligned_cols=130  Identities=25%  Similarity=0.372  Sum_probs=102.1

Q ss_pred             cCCHHHHHH-HHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------------CHhhhcCC
Q 024116          117 PCTPKGCIE-LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------NPEQITSE  179 (272)
Q Consensus       117 p~Ta~g~~~-~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~----------------~l~~~l~~  179 (272)
                      .+|+++++. .++.++++++||+++|+|.|++ |++++..|...|++|++++|+.+                ++.+.+++
T Consensus       131 ~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~i-G~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~  209 (287)
T TIGR02853       131 IPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRT-GMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAE  209 (287)
T ss_pred             HhHHHHHHHHHHHhcCCCCCCCEEEEEcChHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhcc
Confidence            356776554 4667788999999999999995 99999999999999999998742                34567899


Q ss_pred             CcEEEEecCCCccccCC---CcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhce---Eecc-CCCcccHH
Q 024116          180 ADIVIAAAGVANLVRGS---WLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS---VITP-VPGGVGPM  252 (272)
Q Consensus       180 ADIVIsa~g~p~~i~~~---~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~---~~tp-vpGGvGp~  252 (272)
                      +|+||++++.+ +++.+   .+++++++||++++|                |.+||+. +++.+   ...| .||.|+|.
T Consensus       210 aDiVint~P~~-ii~~~~l~~~k~~aliIDlas~P----------------g~tdf~~-Ak~~G~~a~~~~glPg~~ap~  271 (287)
T TIGR02853       210 IDIVINTIPAL-VLTADVLSKLPKHAVIIDLASKP----------------GGTDFEY-AKKRGIKALLAPGLPGIVAPK  271 (287)
T ss_pred             CCEEEECCChH-HhCHHHHhcCCCCeEEEEeCcCC----------------CCCCHHH-HHHCCCEEEEeCCCCcccCch
Confidence            99999998653 34443   468899999999986                5567744 55433   2234 89999999


Q ss_pred             HHHHHHHHHHHHH
Q 024116          253 TVAMLLSNTLDSA  265 (272)
Q Consensus       253 T~amL~~n~v~a~  265 (272)
                      |++.++.|++...
T Consensus       272 ta~~i~~~~~~~~  284 (287)
T TIGR02853       272 TAGKILANVLSEL  284 (287)
T ss_pred             hHHHHHHHHHHHH
Confidence            9999999998653

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=99.33  E-value=1.2e-12  Score=107.52  Aligned_cols=86  Identities=26%  Similarity=0.289  Sum_probs=69.5

Q ss_pred             HHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCCC--------------------CCHhhhcCCCcEEE
Q 024116          126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALT--------------------KNPEQITSEADIVI  184 (272)
Q Consensus       126 ~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~-V~v~~~~t--------------------~~l~~~l~~ADIVI  184 (272)
                      +.++...+++||+++|+|+|++ ||+++..|..+|++ |++++|+.                    .++.+.+.++|+||
T Consensus         2 la~~~~~~l~~~~vlviGaGg~-ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI   80 (135)
T PF01488_consen    2 LAKKKFGDLKGKRVLVIGAGGA-ARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVI   80 (135)
T ss_dssp             HHCTHHSTGTTSEEEEESSSHH-HHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEE
T ss_pred             hhHHhcCCcCCCEEEEECCHHH-HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEE
Confidence            3444445899999999999997 99999999999985 99999973                    24456788999999


Q ss_pred             EecCCCcc-ccCCCcCCC----cEEEEeeeCCC
Q 024116          185 AAAGVANL-VRGSWLKPG----AVVLDVGTCPV  212 (272)
Q Consensus       185 sa~g~p~~-i~~~~vk~g----~vviDig~~~~  212 (272)
                      +||+.+.. ++++++++.    .+++|++++++
T Consensus        81 ~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr~  113 (135)
T PF01488_consen   81 NATPSGMPIITEEMLKKASKKLRLVIDLAVPRD  113 (135)
T ss_dssp             E-SSTTSTSSTHHHHTTTCHHCSEEEES-SS-S
T ss_pred             EecCCCCcccCHHHHHHHHhhhhceeccccCCC
Confidence            99998865 788999886    49999998775

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=99.32  E-value=1.5e-11  Score=101.79  Aligned_cols=128  Identities=27%  Similarity=0.400  Sum_probs=97.0

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCCC-------------------CHhhhcC
Q 024116          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK-------------------NPEQITS  178 (272)
Q Consensus       119 Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t~-------------------~l~~~l~  178 (272)
                      +..|+.+.+++.+.++++++++|+|.|++ |++++..|.+.| ..|++++++..                   +..+.++
T Consensus         2 d~~g~~~a~~~~~~~~~~~~i~iiG~G~~-g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (155)
T cd01065           2 DGLGFVRALEEAGIELKGKKVLILGAGGA-ARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLA   80 (155)
T ss_pred             CHHHHHHHHHhhCCCCCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccc
Confidence            34899999999999999999999999885 999999999986 68999987631                   2234468


Q ss_pred             CCcEEEEecCCCcc------ccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEeccCCCcccHH
Q 024116          179 EADIVIAAAGVANL------VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPM  252 (272)
Q Consensus       179 ~ADIVIsa~g~p~~------i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~  252 (272)
                      ++|+||++++.+..      +....++++.+++|+++.+..          +.+.     +. .++.+.  .+.+|.   
T Consensus        81 ~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~----------~~l~-----~~-~~~~g~--~~v~g~---  139 (155)
T cd01065          81 EADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLE----------TPLL-----KE-ARALGA--KTIDGL---  139 (155)
T ss_pred             cCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCC----------CHHH-----HH-HHHCCC--ceeCCH---
Confidence            89999999985432      333446889999999988643          2222     33 444554  334444   


Q ss_pred             HHHHHHHHHHHHHHHHhC
Q 024116          253 TVAMLLSNTLDSAKRAYG  270 (272)
Q Consensus       253 T~amL~~n~v~a~~~~~~  270 (272)
                        .||+.|.+++++.|+|
T Consensus       140 --~~~~~q~~~~~~~~~~  155 (155)
T cd01065         140 --EMLVYQAAEAFELWTG  155 (155)
T ss_pred             --HHHHHHHHHHHHHhcC
Confidence              4999999999999986

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=99.29  E-value=3.4e-12  Score=122.13  Aligned_cols=146  Identities=18%  Similarity=0.247  Sum_probs=112.3

Q ss_pred             CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHH
Q 024116           50 TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR  129 (272)
Q Consensus        50 ~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~  129 (272)
                      .|.|++.+++..-....=.|..      ...-..-+.++|+-.|-|..-|.++.|....           +.+++++.++
T Consensus       109 GE~QILGQVK~Ay~~a~~~g~~------g~~L~~lFqkAi~~gKrvRseT~I~~~~VSi-----------~saAv~lA~~  171 (414)
T COG0373         109 GETQILGQVKDAYAKAQENGTL------GKVLNRLFQKAISVGKRVRSETGIGKGAVSI-----------SSAAVELAKR  171 (414)
T ss_pred             CcHHHHHHHHHHHHHHHHcCCc------hHHHHHHHHHHHHHHHHhhcccCCCCCccch-----------HHHHHHHHHH
Confidence            4567777776654432222221      1222234556888899988878777665542           3889999999


Q ss_pred             hCCCCccceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC-----------------CCHhhhcCCCcEEEEecCCCc
Q 024116          130 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT-----------------KNPEQITSEADIVIAAAGVAN  191 (272)
Q Consensus       130 ~~~~l~gk~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t-----------------~~l~~~l~~ADIVIsa~g~p~  191 (272)
                      ...++++|+++|||+|.+ |..++.+|.++| ..|+|+||+.                 .++.+++.++|+|||+||.|+
T Consensus       172 ~~~~L~~~~vlvIGAGem-~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~  250 (414)
T COG0373         172 IFGSLKDKKVLVIGAGEM-GELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPH  250 (414)
T ss_pred             HhcccccCeEEEEcccHH-HHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCc
Confidence            988999999999999997 999999999999 5899999983                 467789999999999999999


Q ss_pred             c-ccCCCcCCC------cEEEEeeeCCCC
Q 024116          192 L-VRGSWLKPG------AVVLDVGTCPVD  213 (272)
Q Consensus       192 ~-i~~~~vk~g------~vviDig~~~~~  213 (272)
                      + ++.+++...      .++||++.||+-
T Consensus       251 ~ii~~~~ve~a~~~r~~~livDiavPRdi  279 (414)
T COG0373         251 PIITREMVERALKIRKRLLIVDIAVPRDV  279 (414)
T ss_pred             cccCHHHHHHHHhcccCeEEEEecCCCCC
Confidence            7 688877442      589999999874

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.26  E-value=1.2e-11  Score=104.52  Aligned_cols=92  Identities=24%  Similarity=0.401  Sum_probs=67.6

Q ss_pred             HHHHHHH-HHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEEEEe
Q 024116          121 KGCIELL-IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAA  186 (272)
Q Consensus       121 ~g~~~~l-~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIVIsa  186 (272)
                      +..++.+ +..+..+.||+++|+|+|.+ ||.+|+.|..+|+.|+|+..+.             ..+++.++++|++|++
T Consensus         7 ~S~~d~i~r~t~~~l~Gk~vvV~GYG~v-G~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vta   85 (162)
T PF00670_consen    7 QSLVDGIMRATNLMLAGKRVVVIGYGKV-GKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTA   85 (162)
T ss_dssp             HHHHHHHHHHH-S--TTSEEEEE--SHH-HHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-
T ss_pred             hhHHHHHHhcCceeeCCCEEEEeCCCcc-cHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEEC
Confidence            4444443 46789999999999999995 9999999999999999998763             3678899999999999


Q ss_pred             cCCCccccCCCc---CCCcEEEEeeeCCCC
Q 024116          187 AGVANLVRGSWL---KPGAVVLDVGTCPVD  213 (272)
Q Consensus       187 ~g~p~~i~~~~v---k~g~vviDig~~~~~  213 (272)
                      ||..+.++.+++   |+|+++.++|+...|
T Consensus        86 TG~~~vi~~e~~~~mkdgail~n~Gh~d~E  115 (162)
T PF00670_consen   86 TGNKDVITGEHFRQMKDGAILANAGHFDVE  115 (162)
T ss_dssp             SSSSSSB-HHHHHHS-TTEEEEESSSSTTS
T ss_pred             CCCccccCHHHHHHhcCCeEEeccCcCcee
Confidence            999988887764   899999999988655

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=99.16  E-value=1.2e-10  Score=88.29  Aligned_cols=78  Identities=29%  Similarity=0.460  Sum_probs=67.2

Q ss_pred             CCHHHHHHHHHHhC----CCCccceEEEEcCCcccHHHHHHHHHhC-CCEEEEEeCCCCCHhhhcCCCcEEEEecCCCcc
Q 024116          118 CTPKGCIELLIRSG----VEIMGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALTKNPEQITSEADIVIAAAGVANL  192 (272)
Q Consensus       118 ~Ta~g~~~~l~~~~----~~l~gk~v~ViG~g~~vG~~la~~L~~~-ga~V~v~~~~t~~l~~~l~~ADIVIsa~g~p~~  192 (272)
                      ||+.++++.|++..    .++++|+++|+|+|.. |++++.+|.+. +.+|++++|            |++|++++.+++
T Consensus         1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~-g~~~a~~l~~~~~~~v~v~~r------------di~i~~~~~~~~   67 (86)
T cd05191           1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEV-GKGIAKLLADEGGKKVVLCDR------------DILVTATPAGVP   67 (86)
T ss_pred             ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHH-HHHHHHHHHHcCCCEEEEEcC------------CEEEEcCCCCCC
Confidence            68888888887654    4589999999999885 99999999998 578999977            999999999998


Q ss_pred             ccC---CCcCCCcEEEEee
Q 024116          193 VRG---SWLKPGAVVLDVG  208 (272)
Q Consensus       193 i~~---~~vk~g~vviDig  208 (272)
                      +.+   .+++++.+|+|+.
T Consensus        68 ~~~~~~~~~~~~~~v~~~a   86 (86)
T cd05191          68 VLEEATAKINEGAVVIDLA   86 (86)
T ss_pred             chHHHHHhcCCCCEEEecC
Confidence            866   6788999999973

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=99.15  E-value=4.5e-11  Score=115.23  Aligned_cols=146  Identities=18%  Similarity=0.160  Sum_probs=104.4

Q ss_pred             CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHH
Q 024116           50 TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIR  129 (272)
Q Consensus        50 ~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~  129 (272)
                      .|.|++.+++..-+...=.|..      ..+-..-+.+++.-.|.|.--|.++.|..           ..+.+.+++.++
T Consensus       112 GE~QIlgQVK~A~~~A~~~g~~------g~~L~~lf~~A~~~aKrVrteT~I~~~~v-----------Sv~~~Av~la~~  174 (414)
T PRK13940        112 GEPQILGQVKDSYTLSKKNHAI------GKELDRVFQKVFATAKRVRSETRIGHCPV-----------SVAFSAITLAKR  174 (414)
T ss_pred             CcHHHHHHHHHHHHHHHHcCCc------hHHHHHHHHHHHHHHHHHHhccCCCCCCc-----------CHHHHHHHHHHH
Confidence            4567777776654321111211      11122334447777787766554444332           224678899988


Q ss_pred             hCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC------------------CCHhhhcCCCcEEEEecCCC
Q 024116          130 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT------------------KNPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       130 ~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t------------------~~l~~~l~~ADIVIsa~g~p  190 (272)
                      ...++.||+|+|||+|++ |+.++..|..+|+ .+++++|+.                  .++.+.+.+||+||+||+.|
T Consensus       175 ~~~~l~~kkvlviGaG~~-a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~  253 (414)
T PRK13940        175 QLDNISSKNVLIIGAGQT-GELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL  253 (414)
T ss_pred             HhcCccCCEEEEEcCcHH-HHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC
Confidence            877899999999999997 9999999999995 799999973                  22456789999999999999


Q ss_pred             cc-ccCCCcCC-CcEEEEeeeCCCC
Q 024116          191 NL-VRGSWLKP-GAVVLDVGTCPVD  213 (272)
Q Consensus       191 ~~-i~~~~vk~-g~vviDig~~~~~  213 (272)
                      ++ |+.++++. ..++||++.|++-
T Consensus       254 ~~vi~~~~~~~~~~~~iDLavPRdi  278 (414)
T PRK13940        254 EYIVTCKYVGDKPRVFIDISIPQAL  278 (414)
T ss_pred             CeeECHHHhCCCCeEEEEeCCCCCC
Confidence            97 68888753 4689999999874

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.14  E-value=5.3e-11  Score=115.78  Aligned_cols=114  Identities=23%  Similarity=0.279  Sum_probs=86.7

Q ss_pred             HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEEEEecCCCccc
Q 024116          127 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVANLV  193 (272)
Q Consensus       127 l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIVIsa~g~p~~i  193 (272)
                      ++..+..+.||+++|+|+|. +|+++++.|...|++|++++++.             .++.+.++.||+||+++|.+++|
T Consensus       245 ~R~~~~~LaGKtVgVIG~G~-IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~atGt~~iI  323 (476)
T PTZ00075        245 FRATDVMIAGKTVVVCGYGD-VGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTATGNKDII  323 (476)
T ss_pred             HHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECCCccccc
Confidence            45568899999999999998 59999999999999999997652             24678899999999999999999


Q ss_pred             cCCCc---CCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEeccCCC
Q 024116          194 RGSWL---KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPG  247 (272)
Q Consensus       194 ~~~~v---k~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpG  247 (272)
                      +.++|   |+|++++++|....+...+.+     +..+++|..++.+....+| .|+
T Consensus       324 ~~e~~~~MKpGAiLINvGr~d~Ei~i~aL-----~~~~~vdv~evep~v~~~~-~~~  374 (476)
T PTZ00075        324 TLEHMRRMKNNAIVGNIGHFDNEIQVAEL-----EAYPGIEIVEIKPQVDRYT-FPD  374 (476)
T ss_pred             CHHHHhccCCCcEEEEcCCCchHHhHHHH-----HhcCCceeecccCCCCeEE-eCC
Confidence            88776   999999999988533111111     2235676555555555554 443

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.99  E-value=8e-10  Score=98.42  Aligned_cols=92  Identities=22%  Similarity=0.316  Sum_probs=77.2

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC---EEEEEeCC----CC--------------------
Q 024116          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHAL----TK--------------------  171 (272)
Q Consensus       119 Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga---~V~v~~~~----t~--------------------  171 (272)
                      +..|++..++..+.++++++++|+|+|++ |+.++.+|...|+   .+++++|+    ..                    
T Consensus         8 ~lAG~~~al~~~g~~l~~~rvlvlGAGgA-g~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~   86 (226)
T cd05311           8 TLAGLLNALKLVGKKIEEVKIVINGAGAA-GIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK   86 (226)
T ss_pred             HHHHHHHHHHHhCCCccCCEEEEECchHH-HHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc
Confidence            44778999999999999999999999997 9999999999997   49999997    11                    


Q ss_pred             ---CHhhhcCCCcEEEEecCCCccccCCCcC---CCcEEEEeeeCCCC
Q 024116          172 ---NPEQITSEADIVIAAAGVANLVRGSWLK---PGAVVLDVGTCPVD  213 (272)
Q Consensus       172 ---~l~~~l~~ADIVIsa~g~p~~i~~~~vk---~g~vviDig~~~~~  213 (272)
                         ++.+.++++|+||++++ ++++++++++   ++.+|+|+. ||.+
T Consensus        87 ~~~~l~~~l~~~dvlIgaT~-~G~~~~~~l~~m~~~~ivf~ls-nP~~  132 (226)
T cd05311          87 TGGTLKEALKGADVFIGVSR-PGVVKKEMIKKMAKDPIVFALA-NPVP  132 (226)
T ss_pred             ccCCHHHHHhcCCEEEeCCC-CCCCCHHHHHhhCCCCEEEEeC-CCCC
Confidence               23355677999999999 8888888776   788999987 7754

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK14982 acyl-ACP reductase; Provisional

Probab=98.93  E-value=7.1e-09  Score=97.52  Aligned_cols=87  Identities=22%  Similarity=0.248  Sum_probs=72.4

Q ss_pred             HHHhCCCCccceEEEEcCCcccHHHHHHHHHhC-C-CEEEEEeCCCC---------------CHhhhcCCCcEEEEecCC
Q 024116          127 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH-H-ATVSIVHALTK---------------NPEQITSEADIVIAAAGV  189 (272)
Q Consensus       127 l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~-g-a~V~v~~~~t~---------------~l~~~l~~ADIVIsa~g~  189 (272)
                      .+..+.+++||+|+|+|++|.+|+.+++.|..+ | ..+++++|+..               ++.+.+.++|+||++++.
T Consensus       146 ~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~  225 (340)
T PRK14982        146 APRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASM  225 (340)
T ss_pred             HHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcC
Confidence            445677899999999999877899999999864 5 48999998631               233678899999999998


Q ss_pred             Ccc--ccCCCcCCCcEEEEeeeCCCC
Q 024116          190 ANL--VRGSWLKPGAVVLDVGTCPVD  213 (272)
Q Consensus       190 p~~--i~~~~vk~g~vviDig~~~~~  213 (272)
                      |+.  ++++++++++++||++.+++-
T Consensus       226 ~~~~~I~~~~l~~~~~viDiAvPRDV  251 (340)
T PRK14982        226 PKGVEIDPETLKKPCLMIDGGYPKNL  251 (340)
T ss_pred             CcCCcCCHHHhCCCeEEEEecCCCCC
Confidence            764  789999999999999999864

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=98.92  E-value=1.5e-09  Score=101.80  Aligned_cols=115  Identities=14%  Similarity=0.072  Sum_probs=82.8

Q ss_pred             HhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEE
Q 024116           86 LDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVS  164 (272)
Q Consensus        86 ~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~  164 (272)
                      ..++.-.|.|.--|.++.+..           .-+.+++++++.. -+++||+++|||+|.+ |+.++..|.++|+ .++
T Consensus       136 ~~A~~~aKrVRteT~I~~~~v-----------Sv~s~av~~~~~~-~~l~~k~vLvIGaGem-~~l~a~~L~~~g~~~i~  202 (338)
T PRK00676        136 QKALKEGKVFRSKGGAPYAEV-----------TIESVVQQELRRR-QKSKKASLLFIGYSEI-NRKVAYYLQRQGYSRIT  202 (338)
T ss_pred             HHHHHHHHHHhhhcCCCCCCc-----------CHHHHHHHHHHHh-CCccCCEEEEEcccHH-HHHHHHHHHHcCCCEEE
Confidence            335655666654443333222           1235567777664 5799999999999997 9999999999995 799


Q ss_pred             EEeCCC-----CCHh----hhcCCCcEEEEe---cCCCcc-ccCCCcCC--CcEEEEeeeCCCC
Q 024116          165 IVHALT-----KNPE----QITSEADIVIAA---AGVANL-VRGSWLKP--GAVVLDVGTCPVD  213 (272)
Q Consensus       165 v~~~~t-----~~l~----~~l~~ADIVIsa---~g~p~~-i~~~~vk~--g~vviDig~~~~~  213 (272)
                      ++||+.     .++.    ++..++||||++   |+.|++ ++.+++++  ..++||++.|++-
T Consensus       203 v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~~~r~~iDLAvPRdI  266 (338)
T PRK00676        203 FCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWESLADIPDRIVFDFNVPRTF  266 (338)
T ss_pred             EEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhccCcEEEEecCCCCC
Confidence            999984     2222    457799999997   677876 57666643  2489999999874

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.91  E-value=1.6e-08  Score=87.36  Aligned_cols=95  Identities=32%  Similarity=0.354  Sum_probs=71.0

Q ss_pred             CHHHHHHH----HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------------
Q 024116          119 TPKGCIEL----LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------  171 (272)
Q Consensus       119 Ta~g~~~~----l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-----------------------  171 (272)
                      |+.+.++.    |++.+.++++++++|+|+.|.+|+.++..|.+.|+.|++++|+..                       
T Consensus         7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~   86 (194)
T cd01078           7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETS   86 (194)
T ss_pred             HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCC
Confidence            55555444    445567999999999997444699999999999999999987621                       


Q ss_pred             ---CHhhhcCCCcEEEEecCCCc--cccCC-CcCCCcEEEEeeeCCCC
Q 024116          172 ---NPEQITSEADIVIAAAGVAN--LVRGS-WLKPGAVVLDVGTCPVD  213 (272)
Q Consensus       172 ---~l~~~l~~ADIVIsa~g~p~--~i~~~-~vk~g~vviDig~~~~~  213 (272)
                         ++.+.++++|+||++++.+.  ....+ ..+++.+++|+.++|..
T Consensus        87 ~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~  134 (194)
T cd01078          87 DDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVPPV  134 (194)
T ss_pred             CHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeEEEEccCCCCC
Confidence               12356788999999998766  33333 34568899999999864

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.82  E-value=9e-09  Score=99.44  Aligned_cols=95  Identities=23%  Similarity=0.332  Sum_probs=79.8

Q ss_pred             CCHHHHHHHHHHh-CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEE
Q 024116          118 CTPKGCIELLIRS-GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIV  183 (272)
Q Consensus       118 ~Ta~g~~~~l~~~-~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIV  183 (272)
                      .|.++++..+++. ++.+.||+|+|+|+|.+ |+.+++.|...|++|++++++.             .++.+.++.+|+|
T Consensus       193 gt~~s~~~ai~rat~~~l~Gk~VlViG~G~I-G~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVV  271 (425)
T PRK05476        193 GTGESLLDGIKRATNVLIAGKVVVVAGYGDV-GKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIF  271 (425)
T ss_pred             HHHhhhHHHHHHhccCCCCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEE
Confidence            4678888777765 78899999999999985 9999999999999999998653             2356778899999


Q ss_pred             EEecCCCccccCCC---cCCCcEEEEeeeCCCC
Q 024116          184 IAAAGVANLVRGSW---LKPGAVVLDVGTCPVD  213 (272)
Q Consensus       184 Isa~g~p~~i~~~~---vk~g~vviDig~~~~~  213 (272)
                      |+++|.++.++.++   +|+|++++++|....+
T Consensus       272 I~aTG~~~vI~~~~~~~mK~GailiNvG~~d~E  304 (425)
T PRK05476        272 VTATGNKDVITAEHMEAMKDGAILANIGHFDNE  304 (425)
T ss_pred             EECCCCHHHHHHHHHhcCCCCCEEEEcCCCCCc
Confidence            99999988887544   5899999999987643

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.79  E-value=1.1e-08  Score=95.60  Aligned_cols=92  Identities=24%  Similarity=0.370  Sum_probs=76.4

Q ss_pred             HHHHHHH-HHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEEEEe
Q 024116          121 KGCIELL-IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAA  186 (272)
Q Consensus       121 ~g~~~~l-~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIVIsa  186 (272)
                      ++.+.-+ +..++-+.||+++|.|+|++ ||.+|+.|...||.|.|..-..             ..+.+..+.+||+||+
T Consensus       193 qS~~DgI~RaTn~liaGK~vVV~GYG~v-GrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~  271 (420)
T COG0499         193 QSLLDGILRATNVLLAGKNVVVAGYGWV-GRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTA  271 (420)
T ss_pred             hhHHHHHHhhhceeecCceEEEeccccc-chHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEc
Confidence            4444433 34788899999999999995 9999999999999999987653             2457888999999999


Q ss_pred             cCCCccccCCCc---CCCcEEEEeeeCCCC
Q 024116          187 AGVANLVRGSWL---KPGAVVLDVGTCPVD  213 (272)
Q Consensus       187 ~g~p~~i~~~~v---k~g~vviDig~~~~~  213 (272)
                      ||.-+.|+.+++   |+|+++.++|+.-.|
T Consensus       272 TGnkdVi~~eh~~~MkDgaIl~N~GHFd~E  301 (420)
T COG0499         272 TGNKDVIRKEHFEKMKDGAILANAGHFDVE  301 (420)
T ss_pred             cCCcCccCHHHHHhccCCeEEeccccccee
Confidence            999999988875   789999999976543

>PLN00203 glutamyl-tRNA reductase

Probab=98.76  E-value=7.9e-09  Score=102.26  Aligned_cols=117  Identities=15%  Similarity=0.157  Sum_probs=87.6

Q ss_pred             HHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCC--CCccceEEEEcCCcccHHHHHHHHHhCCC-
Q 024116           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGV--EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-  161 (272)
Q Consensus        85 i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~--~l~gk~v~ViG~g~~vG~~la~~L~~~ga-  161 (272)
                      +..++.-.|.|.--|.++.|..           ..+.+.+++.++..-  ++.+++|+|||+|++ |+.++..|...|+ 
T Consensus       224 F~~Ai~~~KrVRteT~I~~~~v-----------Sv~s~Av~la~~~~~~~~l~~kkVlVIGAG~m-G~~~a~~L~~~G~~  291 (519)
T PLN00203        224 FKHAITAGKRVRTETNIASGAV-----------SVSSAAVELALMKLPESSHASARVLVIGAGKM-GKLLVKHLVSKGCT  291 (519)
T ss_pred             HHHHHHHHHHHhhccCCCCCCc-----------CHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHH-HHHHHHHHHhCCCC
Confidence            3346666777765554443322           234678888887654  499999999999996 9999999999996 


Q ss_pred             EEEEEeCCC--------------------CCHhhhcCCCcEEEEecCCCcc-ccCCCcCC----------CcEEEEeeeC
Q 024116          162 TVSIVHALT--------------------KNPEQITSEADIVIAAAGVANL-VRGSWLKP----------GAVVLDVGTC  210 (272)
Q Consensus       162 ~V~v~~~~t--------------------~~l~~~l~~ADIVIsa~g~p~~-i~~~~vk~----------g~vviDig~~  210 (272)
                      .|++++|+.                    .++.+.+.+||+||++|+.++. ++++|+++          ..++||++.+
T Consensus       292 ~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvP  371 (519)
T PLN00203        292 KMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVP  371 (519)
T ss_pred             eEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence            799999872                    1344667899999999998875 78887643          2489999999


Q ss_pred             CCC
Q 024116          211 PVD  213 (272)
Q Consensus       211 ~~~  213 (272)
                      ++-
T Consensus       372 RdI  374 (519)
T PLN00203        372 RNV  374 (519)
T ss_pred             CCC
Confidence            863

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.69  E-value=6.4e-08  Score=93.08  Aligned_cols=94  Identities=28%  Similarity=0.378  Sum_probs=76.9

Q ss_pred             CCHHHHHHHHHH-hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEE
Q 024116          118 CTPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIV  183 (272)
Q Consensus       118 ~Ta~g~~~~l~~-~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIV  183 (272)
                      +|.+.+++.+.+ .++.+.||+|+|+|+|.+ |+.+++.|...|++|++++++.             .++.+.++.+|+|
T Consensus       176 g~g~s~~~~i~r~t~~~l~Gk~VvViG~G~I-G~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVV  254 (406)
T TIGR00936       176 GTGQSTIDGILRATNLLIAGKTVVVAGYGWC-GKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIF  254 (406)
T ss_pred             ccchhHHHHHHHhcCCCCCcCEEEEECCCHH-HHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEE
Confidence            455666665544 578899999999999995 9999999999999999997553             2356778899999


Q ss_pred             EEecCCCccccC---CCcCCCcEEEEeeeCCC
Q 024116          184 IAAAGVANLVRG---SWLKPGAVVLDVGTCPV  212 (272)
Q Consensus       184 Isa~g~p~~i~~---~~vk~g~vviDig~~~~  212 (272)
                      |+++|.++.++.   ..+++|++++.+|....
T Consensus       255 ItaTG~~~vI~~~~~~~mK~GailiN~G~~~~  286 (406)
T TIGR00936       255 ITATGNKDVIRGEHFENMKDGAIVANIGHFDV  286 (406)
T ss_pred             EECCCCHHHHHHHHHhcCCCCcEEEEECCCCc
Confidence            999999888876   35699999999998754

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.67  E-value=4.8e-08  Score=94.48  Aligned_cols=93  Identities=18%  Similarity=0.267  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC-----------------CHhhhcCCCc
Q 024116          120 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK-----------------NPEQITSEAD  181 (272)
Q Consensus       120 a~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t~-----------------~l~~~l~~AD  181 (272)
                      +...+++.+....++.|++|+|+|+|.+ |+.++..|...|+ .|++++|+..                 ++.+.+..+|
T Consensus       166 ~~~Av~~a~~~~~~~~~~~vlViGaG~i-G~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aD  244 (423)
T PRK00045        166 ASAAVELAKQIFGDLSGKKVLVIGAGEM-GELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEAD  244 (423)
T ss_pred             HHHHHHHHHHhhCCccCCEEEEECchHH-HHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCC
Confidence            3455666655444789999999999886 9999999999997 8999998631                 2335678899


Q ss_pred             EEEEecCCCcc-ccCCCcCC--------CcEEEEeeeCCCC
Q 024116          182 IVIAAAGVANL-VRGSWLKP--------GAVVLDVGTCPVD  213 (272)
Q Consensus       182 IVIsa~g~p~~-i~~~~vk~--------g~vviDig~~~~~  213 (272)
                      +||++||.|+. ++++|+++        +.+++|++.+++-
T Consensus       245 vVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prdi  285 (423)
T PRK00045        245 IVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRDI  285 (423)
T ss_pred             EEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCCC
Confidence            99999998875 78888843        4799999987753

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.65  E-value=1.3e-07  Score=90.14  Aligned_cols=124  Identities=25%  Similarity=0.301  Sum_probs=86.0

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------CCHhhhcCCCcEEEEecCC---
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------KNPEQITSEADIVIAAAGV---  189 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t---------------------~~l~~~l~~ADIVIsa~g~---  189 (272)
                      +.+++|+|+|+|.+ |+.++..|...|++|++++++.                     .++.+.++++|+||++++.   
T Consensus       165 l~~~~VlViGaG~v-G~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~  243 (370)
T TIGR00518       165 VEPGDVTIIGGGVV-GTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA  243 (370)
T ss_pred             CCCceEEEEcCCHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence            57889999999885 9999999999999999998752                     1345677899999999843   


Q ss_pred             --CccccCCCc---CCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhh---hceEeccCCCcccHHHHHHHHHHH
Q 024116          190 --ANLVRGSWL---KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMR---LASVITPVPGGVGPMTVAMLLSNT  261 (272)
Q Consensus       190 --p~~i~~~~v---k~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~---~~~~~tpvpGGvGp~T~amL~~n~  261 (272)
                        |.+++.+++   +++.+|||+++.+.- +...     ++ .+..|+..+..   ....+.-.||-+ |.|...++.|.
T Consensus       244 ~~p~lit~~~l~~mk~g~vIvDva~d~GG-~~e~-----~~-~t~~d~p~~~~~Gv~~~~v~nlP~~~-p~~aS~~~~~~  315 (370)
T TIGR00518       244 KAPKLVSNSLVAQMKPGAVIVDVAIDQGG-CVET-----SR-PTTHDQPTYAVHDVVHYCVANMPGAV-PKTSTYALTNA  315 (370)
T ss_pred             CCCcCcCHHHHhcCCCCCEEEEEecCCCC-CccC-----Cc-CCCCCCCEEEECCeEEEEeCCccccc-HHHHHHHHHHH
Confidence              555777664   789999999987631 0000     00 11111111110   123455688888 99999999888


Q ss_pred             HHHHH
Q 024116          262 LDSAK  266 (272)
Q Consensus       262 v~a~~  266 (272)
                      +..+-
T Consensus       316 l~~~l  320 (370)
T TIGR00518       316 TMPYV  320 (370)
T ss_pred             HHHHH
Confidence            76553

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.64  E-value=4.5e-08  Score=94.58  Aligned_cols=92  Identities=24%  Similarity=0.302  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCCC-----------------CHhhhcCCCc
Q 024116          120 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK-----------------NPEQITSEAD  181 (272)
Q Consensus       120 a~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t~-----------------~l~~~l~~AD  181 (272)
                      +.+++++.++...++.|++|+|+|+|.+ |+.++..|...| ..|++++|+..                 ++.+.+..+|
T Consensus       164 ~~~Av~la~~~~~~l~~~~VlViGaG~i-G~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aD  242 (417)
T TIGR01035       164 SSAAVELAERIFGSLKGKKALLIGAGEM-GELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEAD  242 (417)
T ss_pred             HHHHHHHHHHHhCCccCCEEEEECChHH-HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCC
Confidence            4556666666656799999999999886 999999999999 68999998631                 2446678999


Q ss_pred             EEEEecCCCcc-ccCCCcCC-------CcEEEEeeeCCC
Q 024116          182 IVIAAAGVANL-VRGSWLKP-------GAVVLDVGTCPV  212 (272)
Q Consensus       182 IVIsa~g~p~~-i~~~~vk~-------g~vviDig~~~~  212 (272)
                      +||++||.|+. ++++|+++       ..+++|++.+++
T Consensus       243 vVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Prd  281 (417)
T TIGR01035       243 IVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPRD  281 (417)
T ss_pred             EEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            99999998875 78888743       359999997765

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PLN02494 adenosylhomocysteinase

Probab=98.52  E-value=2.4e-07  Score=90.39  Aligned_cols=91  Identities=24%  Similarity=0.330  Sum_probs=73.7

Q ss_pred             CHHHHHHHHH-HhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------CHhhhcCCCcEEE
Q 024116          119 TPKGCIELLI-RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITSEADIVI  184 (272)
Q Consensus       119 Ta~g~~~~l~-~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------~l~~~l~~ADIVI  184 (272)
                      |-+.+++.+. ..++.+.||+++|+|+|.+ |+.+++.+...|++|+++++...             ++.+.++.+|+||
T Consensus       236 tgqS~~d~i~r~t~i~LaGKtVvViGyG~I-Gr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI  314 (477)
T PLN02494        236 CRHSLPDGLMRATDVMIAGKVAVICGYGDV-GKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFV  314 (477)
T ss_pred             ccccHHHHHHHhcCCccCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEE
Confidence            3345555443 4578899999999999985 99999999999999999876531             3567788999999


Q ss_pred             EecCCCccccC---CCcCCCcEEEEeeeC
Q 024116          185 AAAGVANLVRG---SWLKPGAVVLDVGTC  210 (272)
Q Consensus       185 sa~g~p~~i~~---~~vk~g~vviDig~~  210 (272)
                      +++|..+++..   +.+|+|++++.+|..
T Consensus       315 ~tTGt~~vI~~e~L~~MK~GAiLiNvGr~  343 (477)
T PLN02494        315 TTTGNKDIIMVDHMRKMKNNAIVCNIGHF  343 (477)
T ss_pred             ECCCCccchHHHHHhcCCCCCEEEEcCCC
Confidence            99998887744   357999999999984

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.50  E-value=3.5e-07  Score=85.02  Aligned_cols=92  Identities=22%  Similarity=0.289  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCCC-----------------CHhhhcCCCc
Q 024116          120 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK-----------------NPEQITSEAD  181 (272)
Q Consensus       120 a~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t~-----------------~l~~~l~~AD  181 (272)
                      +...++..+...-++.|++|+|+|+|.+ |+.++.+|...| ..|++++|+.+                 ++.+.++++|
T Consensus       162 ~~~Av~~a~~~~~~l~~~~V~ViGaG~i-G~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aD  240 (311)
T cd05213         162 SSAAVELAEKIFGNLKGKKVLVIGAGEM-GELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEAD  240 (311)
T ss_pred             HHHHHHHHHHHhCCccCCEEEEECcHHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCC
Confidence            3445677766555689999999999886 999999999877 47999998631                 2456678899


Q ss_pred             EEEEecCCCcc---ccC---CCcCCCcEEEEeeeCCC
Q 024116          182 IVIAAAGVANL---VRG---SWLKPGAVVLDVGTCPV  212 (272)
Q Consensus       182 IVIsa~g~p~~---i~~---~~vk~g~vviDig~~~~  212 (272)
                      +||++||.|+.   +..   ..-.++.+++|++.+++
T Consensus       241 vVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPrd  277 (311)
T cd05213         241 VVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPRD  277 (311)
T ss_pred             EEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCCC
Confidence            99999998875   211   12235789999997765

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=98.50  E-value=2.3e-07  Score=79.39  Aligned_cols=82  Identities=26%  Similarity=0.361  Sum_probs=65.6

Q ss_pred             HhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEEEEecCC-C---c
Q 024116          129 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGV-A---N  191 (272)
Q Consensus       129 ~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIVIsa~g~-p---~  191 (272)
                      ..+.++.||+|.|+|.|.+ |+.++.+|...|++|+.++++.             .++.+.+++||+|+...+. |   +
T Consensus        29 ~~~~~l~g~tvgIiG~G~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~  107 (178)
T PF02826_consen   29 FPGRELRGKTVGIIGYGRI-GRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRG  107 (178)
T ss_dssp             TTBS-STTSEEEEESTSHH-HHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTT
T ss_pred             CCccccCCCEEEEEEEcCC-cCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccce
Confidence            3456899999999999996 9999999999999999999874             4678899999999988872 3   4


Q ss_pred             cccCCC---cCCCcEEEEeeeCC
Q 024116          192 LVRGSW---LKPGAVVLDVGTCP  211 (272)
Q Consensus       192 ~i~~~~---vk~g~vviDig~~~  211 (272)
                      +|+++.   +|+|+++|+++--.
T Consensus       108 li~~~~l~~mk~ga~lvN~aRG~  130 (178)
T PF02826_consen  108 LINAEFLAKMKPGAVLVNVARGE  130 (178)
T ss_dssp             SBSHHHHHTSTTTEEEEESSSGG
T ss_pred             eeeeeeeeccccceEEEeccchh
Confidence            677764   48899999998654

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PLN02928 oxidoreductase family protein

Probab=98.49  E-value=1.3e-06  Score=82.57  Aligned_cols=135  Identities=21%  Similarity=0.266  Sum_probs=92.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------------CCHhhhcCCCcEEEEe
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------------KNPEQITSEADIVIAA  186 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------------~~l~~~l~~ADIVIsa  186 (272)
                      .++.||++.|||.|.+ |+.++..|...|++|+.++++.                         .++.+.+++||+|+.+
T Consensus       155 ~~l~gktvGIiG~G~I-G~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~  233 (347)
T PLN02928        155 DTLFGKTVFILGYGAI-GIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLC  233 (347)
T ss_pred             cCCCCCEEEEECCCHH-HHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEEC
Confidence            4789999999999996 9999999999999999987641                         2567899999999999


Q ss_pred             cCC----CccccCCC---cCCCcEEEEeeeCCCCCC---CCCCCCCCceEec---ccchhh--------hhhhceEeccC
Q 024116          187 AGV----ANLVRGSW---LKPGAVVLDVGTCPVDVS---VDPSCEYGYRLMG---DVCYEE--------AMRLASVITPV  245 (272)
Q Consensus       187 ~g~----p~~i~~~~---vk~g~vviDig~~~~~~~---~~~~~~~~~k~~G---dvd~~~--------~~~~~~~~tpv  245 (272)
                      ++.    .++|+.+.   +|+|+++|++|--..-++   .+.+.  .+++.|   ||-..+        ..-..-.+||=
T Consensus       234 lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~--~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPH  311 (347)
T PLN02928        234 CTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALE--SGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPH  311 (347)
T ss_pred             CCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH--cCCeeEEEEccCCCCCCCCCChhhcCCCEEECCc
Confidence            873    34677664   488999999986553210   00111  234433   552111        11124477888


Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHh
Q 024116          246 PGGVGPMTVAMLLSNTLDSAKRAY  269 (272)
Q Consensus       246 pGGvGp~T~amL~~n~v~a~~~~~  269 (272)
                      .||.-.-+..-+...+++..++|+
T Consensus       312 ia~~t~~~~~~~~~~~~~nl~~~~  335 (347)
T PLN02928        312 VAGVTEYSYRSMGKIVGDAALQLH  335 (347)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHH
Confidence            888766655555665666666554

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.48  E-value=4.2e-07  Score=87.72  Aligned_cols=93  Identities=27%  Similarity=0.375  Sum_probs=75.1

Q ss_pred             CHHHHHHH-HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEEE
Q 024116          119 TPKGCIEL-LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVI  184 (272)
Q Consensus       119 Ta~g~~~~-l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIVI  184 (272)
                      |.+++++. ++..++.+.|++|+|+|+|.+ |+.+++.+...|++|+++++..             ..+.+.++.+|+||
T Consensus       184 ~g~s~~~~i~r~t~~~l~GktVvViG~G~I-G~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI  262 (413)
T cd00401         184 CRESLIDGIKRATDVMIAGKVAVVAGYGDV-GKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFV  262 (413)
T ss_pred             hchhhHHHHHHhcCCCCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEE
Confidence            44555444 455688899999999999985 9999999999999999987653             13457788999999


Q ss_pred             EecCCCccccC---CCcCCCcEEEEeeeCCC
Q 024116          185 AAAGVANLVRG---SWLKPGAVVLDVGTCPV  212 (272)
Q Consensus       185 sa~g~p~~i~~---~~vk~g~vviDig~~~~  212 (272)
                      +++|.++.++.   +++++|.+++.+|..+.
T Consensus       263 ~atG~~~~i~~~~l~~mk~GgilvnvG~~~~  293 (413)
T cd00401         263 TTTGNKDIITGEHFEQMKDGAIVCNIGHFDV  293 (413)
T ss_pred             ECCCCHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            99999887754   45699999999997654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=98.43  E-value=8.9e-07  Score=80.32  Aligned_cols=148  Identities=18%  Similarity=0.259  Sum_probs=98.7

Q ss_pred             CccEEEEcCCCCC-------CCCHHHHHhcCCcccc----cCccccc-----cccccccCC-------CCCccccCCHHH
Q 024116           66 SINGILVQLPLPQ-------HLDEGKILDAVSLEKD----VDGFHPL-----NIGNLAMRG-------REPLFIPCTPKG  122 (272)
Q Consensus        66 ~v~Gi~vq~Plp~-------~~~~~~i~~~i~p~KD----vdg~~~~-----n~g~l~~~~-------~~~~~~p~Ta~g  122 (272)
                      -+.|+++..||-+       +.-.++++++....++    |-|+.-.     |+|+-..-.       +--.+-.-|+++
T Consensus        70 vieg~l~~~pllpe~~~s~pkaatrrvl~a~~~a~~~Ga~V~gLGgFssIVgn~~~n~q~~~~e~t~~~~ttgns~Taya  149 (351)
T COG5322          70 VIEGYLVESPLLPEMLRSRPKAATRRVLNAMALAQKLGADVTGLGGFSSIVGNLGQNVQVRNVELTFTRFTTGNSHTAYA  149 (351)
T ss_pred             EEEEEEEccccCHHHHhhCHHHHHHHHHHHHHHHHHcCCeEEeecchhhhhccccccccccceEEEEEecccCCccchHH
Confidence            4789999999865       1123456666655544    3333211     232211000       001122446666


Q ss_pred             H----HHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------CHh-hhc
Q 024116          123 C----IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPE-QIT  177 (272)
Q Consensus       123 ~----~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~--------------------~l~-~~l  177 (272)
                      +    .+.+++.|++++..+|.|+|+-|.+|.++++.|..+++...+.+|...                    ++. +++
T Consensus       150 a~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~  229 (351)
T COG5322         150 ACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALP  229 (351)
T ss_pred             HHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeecccccc
Confidence            3    455667899999999999999999999999999999998888886521                    122 334


Q ss_pred             CCCcEEEEecCCCcc-ccCCCcCCCcEEEEeeeCCCC
Q 024116          178 SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCPVD  213 (272)
Q Consensus       178 ~~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~~~~~  213 (272)
                      ...++|.+|+-.++. |.+.++|||++|+|-|++.+-
T Consensus       230 ~e~i~v~vAs~~~g~~I~pq~lkpg~~ivD~g~P~dv  266 (351)
T COG5322         230 QEDILVWVASMPKGVEIFPQHLKPGCLIVDGGYPKDV  266 (351)
T ss_pred             ccceEEEEeecCCCceechhhccCCeEEEcCCcCccc
Confidence            444455588877775 899999999999999998753

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.37  E-value=2.8e-06  Score=83.93  Aligned_cols=146  Identities=17%  Similarity=0.255  Sum_probs=92.7

Q ss_pred             HHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCccccccccccccCCCCCccccCC----HHHHHHHHHHhCC-
Q 024116           58 LSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCT----PKGCIELLIRSGV-  132 (272)
Q Consensus        58 i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~T----a~g~~~~l~~~~~-  132 (272)
                      ++.|++    +.+++...+|.. + .++++++. +|.+..+..--.-++.+.+..+.+-+-.    ..|+++....++. 
T Consensus        79 ~~~l~~----g~tli~~l~p~~-n-~~ll~~l~-~k~it~ia~E~vprisraq~~d~lssma~iAGy~Avi~Aa~~lgr~  151 (511)
T TIGR00561        79 IAELPA----GKALVSFIWPAQ-N-PELMEKLA-AKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAIIEAAHEFGRF  151 (511)
T ss_pred             HHhcCC----CCEEEEEcCccC-C-HHHHHHHH-HcCCEEEEeecccccccCCccCcchhhHHHHHHHHHHHHHHHhhhh
Confidence            666666    356777777764 3 45666553 2223322111011121111112211110    1566777666553 


Q ss_pred             ---------CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------C----------------
Q 024116          133 ---------EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------N----------------  172 (272)
Q Consensus       133 ---------~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~---------------~----------------  172 (272)
                               .+.+.+|+|+|+|.+ |..++..+...|+.|+++.++..               +                
T Consensus       152 ~~g~~taag~vp~akVlViGaG~i-Gl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s  230 (511)
T TIGR00561       152 FTGQITAAGKVPPAKVLVIGAGVA-GLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMS  230 (511)
T ss_pred             cCCceecCCCCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecC
Confidence                     235689999999885 99999999999999999875520               0                


Q ss_pred             ----------HhhhcCCCcEEEEec---C--CCccccCCCc---CCCcEEEEeeeCC
Q 024116          173 ----------PEQITSEADIVIAAA---G--VANLVRGSWL---KPGAVVLDVGTCP  211 (272)
Q Consensus       173 ----------l~~~l~~ADIVIsa~---g--~p~~i~~~~v---k~g~vviDig~~~  211 (272)
                                +.+.++.+||||+++   |  .|.+++.+|+   |+|++|+|++..+
T Consensus       231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~  287 (511)
T TIGR00561       231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQ  287 (511)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCC
Confidence                      345678999999999   5  4667888875   8899999999865

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=98.35  E-value=7.1e-07  Score=82.21  Aligned_cols=84  Identities=27%  Similarity=0.408  Sum_probs=72.2

Q ss_pred             HhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEEEEecCCCccccC
Q 024116          129 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVANLVRG  195 (272)
Q Consensus       129 ~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIVIsa~g~p~~i~~  195 (272)
                      ....-+.||.++|.|+|. |||..++.|...|+.|+|..-..             ..+++.++++||+||+||.-+.|..
T Consensus       207 aTDvM~aGKv~Vv~GYGd-VGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtTGc~dii~~  285 (434)
T KOG1370|consen  207 ATDVMIAGKVAVVCGYGD-VGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTTGCKDIITG  285 (434)
T ss_pred             hhhheecccEEEEeccCc-cchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEccCCcchhhH
Confidence            345667999999999999 59999999999999999987653             3578999999999999999888877


Q ss_pred             CCc---CCCcEEEEeeeCCCC
Q 024116          196 SWL---KPGAVVLDVGTCPVD  213 (272)
Q Consensus       196 ~~v---k~g~vviDig~~~~~  213 (272)
                      ++|   |++++|+++|+.-.|
T Consensus       286 ~H~~~mk~d~IvCN~Ghfd~E  306 (434)
T KOG1370|consen  286 EHFDQMKNDAIVCNIGHFDTE  306 (434)
T ss_pred             HHHHhCcCCcEEeccccccce
Confidence            765   779999999988654

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=98.27  E-value=1.5e-05  Score=76.38  Aligned_cols=144  Identities=19%  Similarity=0.204  Sum_probs=98.0

Q ss_pred             HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------CCHhhhcCCCcEEEEecCC-C------
Q 024116          127 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV-A------  190 (272)
Q Consensus       127 l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t---------~~l~~~l~~ADIVIsa~g~-p------  190 (272)
                      .++.+.++.||++.|||.|.+ |+.++..|...|++|..+++..         .++.+.+++||+|+..++- +      
T Consensus       107 ~r~~g~~l~gktvGIIG~G~I-G~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T  185 (381)
T PRK00257        107 AEREGVDLAERTYGVVGAGHV-GGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPT  185 (381)
T ss_pred             hcccCCCcCcCEEEEECCCHH-HHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccc
Confidence            345678899999999999995 9999999999999999997531         2578889999999988772 2      


Q ss_pred             -ccccCC---CcCCCcEEEEeeeCCCCCC---CCCCCCC-CceEecccch------hhhhhhceEeccCCCcccHHHHHH
Q 024116          191 -NLVRGS---WLKPGAVVLDVGTCPVDVS---VDPSCEY-GYRLMGDVCY------EEAMRLASVITPVPGGVGPMTVAM  256 (272)
Q Consensus       191 -~~i~~~---~vk~g~vviDig~~~~~~~---~~~~~~~-~~k~~Gdvd~------~~~~~~~~~~tpvpGGvGp~T~am  256 (272)
                       ++++.+   .+|+|+++|+++.-..-++   .+....+ -....=||=.      ..+....-.+||=.+|...-+..-
T Consensus       186 ~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~nvi~TPHiAg~s~e~~~r  265 (381)
T PRK00257        186 RHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADLCTIATPHIAGYSLDGKAR  265 (381)
T ss_pred             cccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhCCEEEcCccccCCHHHHHH
Confidence             467655   4589999999987654210   0000000 0123335421      112334567888888887666666


Q ss_pred             HHHHHHHHHHHHhCC
Q 024116          257 LLSNTLDSAKRAYGF  271 (272)
Q Consensus       257 L~~n~v~a~~~~~~~  271 (272)
                      .....+++..+|++.
T Consensus       266 ~~~~~~~nl~~~~~~  280 (381)
T PRK00257        266 GTAQIYQALCRFFGI  280 (381)
T ss_pred             HHHHHHHHHHHHHcC
Confidence            666666666666664

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.25  E-value=1.3e-06  Score=80.72  Aligned_cols=118  Identities=31%  Similarity=0.434  Sum_probs=82.3

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------CCHhhhcCCCcEEEEecC----
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------KNPEQITSEADIVIAAAG----  188 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t---------------------~~l~~~l~~ADIVIsa~g----  188 (272)
                      +...+|+|||.|- ||.-.++++...||+|+|.+.+.                     .++++.++.||+||.|+=    
T Consensus       166 V~~~kv~iiGGGv-vgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga  244 (371)
T COG0686         166 VLPAKVVVLGGGV-VGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA  244 (371)
T ss_pred             CCCccEEEECCcc-ccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence            4567899999966 59999999999999999998652                     256789999999998873    


Q ss_pred             -CCccccCCCc---CCCcEEEEeeeCCC---CCCCCCCCCC-C-ceEecccchhhhhhhceEeccCCCcccHHHHHHHHH
Q 024116          189 -VANLVRGSWL---KPGAVVLDVGTCPV---DVSVDPSCEY-G-YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLS  259 (272)
Q Consensus       189 -~p~~i~~~~v---k~g~vviDig~~~~---~~~~~~~~~~-~-~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL~~  259 (272)
                       .|.+++.+|+   |||+++||++++.-   |+. .+++.. . ....|-++|        ++.-.||-| |.|..+-+.
T Consensus       245 kaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~-~~TTh~~PtY~~~gvvhY--------~VaNmPgaV-prTst~AL~  314 (371)
T COG0686         245 KAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETS-HPTTHDDPTYEVDGVVHY--------GVANMPGAV-PRTSTQALT  314 (371)
T ss_pred             CCceehhHHHHHhcCCCcEEEEEEEcCCCceecc-ccccCCCCceeecCEEEE--------ecCCCCccc-cchhHHHhh
Confidence             4668888875   88999999999853   211 111110 0 111222222        222356555 889888887


Q ss_pred             HHH
Q 024116          260 NTL  262 (272)
Q Consensus       260 n~v  262 (272)
                      |.-
T Consensus       315 nat  317 (371)
T COG0686         315 NAT  317 (371)
T ss_pred             hcc
Confidence            763

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.21  E-value=4.1e-06  Score=73.23  Aligned_cols=94  Identities=17%  Similarity=0.175  Sum_probs=66.9

Q ss_pred             cCCHHHHHHHHH----Hh--CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH--------------hhh
Q 024116          117 PCTPKGCIELLI----RS--GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP--------------EQI  176 (272)
Q Consensus       117 p~Ta~g~~~~l~----~~--~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l--------------~~~  176 (272)
                      |.|++|+...++    +.  +.+++||+++|+|.|. +|+.+++.|.+.|++|++++++.+.+              .+.
T Consensus         3 ~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~-vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l   81 (200)
T cd01075           3 PPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGK-VGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEI   81 (200)
T ss_pred             ChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhh
Confidence            678888755544    33  7899999999999997 59999999999999999988764211              122


Q ss_pred             c-CCCcEEEEecCCCccccCCCcCC--CcEEEEeeeCCC
Q 024116          177 T-SEADIVIAAAGVANLVRGSWLKP--GAVVLDVGTCPV  212 (272)
Q Consensus       177 l-~~ADIVIsa~g~p~~i~~~~vk~--g~vviDig~~~~  212 (272)
                      . .++|+++.+... +.++.+.++.  ..+|++-+-+|.
T Consensus        82 ~~~~~Dv~vp~A~~-~~I~~~~~~~l~~~~v~~~AN~~~  119 (200)
T cd01075          82 YSVDADVFAPCALG-GVINDDTIPQLKAKAIAGAANNQL  119 (200)
T ss_pred             ccccCCEEEecccc-cccCHHHHHHcCCCEEEECCcCcc
Confidence            2 379999955442 3555554422  457778776654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []

Probab=98.21  E-value=9.4e-07  Score=66.66  Aligned_cols=65  Identities=18%  Similarity=0.288  Sum_probs=49.5

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-ccccC
Q 024116           27 RNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EKDVD   96 (272)
Q Consensus        27 ~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~KDvd   96 (272)
                      ..++++|+++|+++.|..++.  +++++.+.++.++. +++.|++||+|+|+  +..++++.+++ .+-+.
T Consensus        13 ~~hn~~f~~~g~~~~Y~~~~v--~~~~l~~~~~~~~~-~~~~G~~VT~P~K~--~~~~~~D~~~~~A~~ig   78 (83)
T PF08501_consen   13 LIHNAAFEALGLDAVYIPFEV--EPEDLEDFLDALRA-PNFRGLNVTMPHKE--AAIPYLDELSPSAKAIG   78 (83)
T ss_dssp             HHHHHHHHHTTSSEEEEEEET--STTCHHHHHHHHHH-TTESEEEE-TTSTT--HHGGGSSEE-HHHHHHT
T ss_pred             HHHHHHHHHcCCCcEEEEeec--CHHHHHHHHHHHhc-CCCCeeeecchHHH--HHHHHhccCCHHHHHhC
Confidence            378999999999999999966  56788899999988 79999999999996  33444444444 44433

Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=98.20  E-value=3.8e-06  Score=80.25  Aligned_cols=144  Identities=18%  Similarity=0.209  Sum_probs=95.8

Q ss_pred             HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------CCHhhhcCCCcEEEEecCC-C------
Q 024116          127 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV-A------  190 (272)
Q Consensus       127 l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t---------~~l~~~l~~ADIVIsa~g~-p------  190 (272)
                      .++.+.++.||++.|||.|.+ |+.++..|...|++|..+++..         .++.+.+++||||+..++- +      
T Consensus       107 ~r~~g~~L~gktvGIIG~G~I-G~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T  185 (378)
T PRK15438        107 AERDGFSLHDRTVGIVGVGNV-GRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKT  185 (378)
T ss_pred             hccCCCCcCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCccccc
Confidence            345678999999999999995 9999999999999999997421         2588999999999976662 1      


Q ss_pred             -ccccCC---CcCCCcEEEEeeeCCCCCC---CCCCCCC-CceEecccchh------hhhhhceEeccCCCcccHHHHHH
Q 024116          191 -NLVRGS---WLKPGAVVLDVGTCPVDVS---VDPSCEY-GYRLMGDVCYE------EAMRLASVITPVPGGVGPMTVAM  256 (272)
Q Consensus       191 -~~i~~~---~vk~g~vviDig~~~~~~~---~~~~~~~-~~k~~Gdvd~~------~~~~~~~~~tpvpGGvGp~T~am  256 (272)
                       ++++.+   .+|+|+++|+++--..-++   .+....+ .....=||-..      .+.+....+||=.+|...=+...
T Consensus       186 ~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~i~TPHiAg~s~e~~~~  265 (378)
T PRK15438        186 LHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVDIGTPHIAGYTLEGKAR  265 (378)
T ss_pred             ccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCCEECCccCcCcHHHHHH
Confidence             356654   4589999999997654210   0000000 01233455211      12233347899888887666655


Q ss_pred             HHHHHHHHHHHHhCC
Q 024116          257 LLSNTLDSAKRAYGF  271 (272)
Q Consensus       257 L~~n~v~a~~~~~~~  271 (272)
                      ....++++..+++|.
T Consensus       266 ~~~~~~~~l~~~~~~  280 (378)
T PRK15438        266 GTTQVFEAYSKFIGH  280 (378)
T ss_pred             HHHHHHHHHHHHHcC
Confidence            555566666666653

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=98.16  E-value=5.1e-06  Score=77.78  Aligned_cols=91  Identities=16%  Similarity=0.244  Sum_probs=69.4

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHH-hCC-CEEEEEeCCC---------------------CCH
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ-RHH-ATVSIVHALT---------------------KNP  173 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~-~~g-a~V~v~~~~t---------------------~~l  173 (272)
                      .+.+.+++......  .-..++++|||+|+. |+..+..|. .++ .+|++++|+.                     .++
T Consensus       112 RTaa~~~laa~~la--~~~~~~v~iiGaG~q-A~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~  188 (326)
T TIGR02992       112 RTAAAGAVAARHLA--REDSSVVAIFGAGMQ-ARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDP  188 (326)
T ss_pred             HHHHHHHHHHHHhC--CCCCcEEEEECCCHH-HHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCH
Confidence            33445555544211  235789999999997 999999887 466 4799999862                     345


Q ss_pred             hhhcCCCcEEEEecCCCc-cccCCCcCCCcEEEEeeeC
Q 024116          174 EQITSEADIVIAAAGVAN-LVRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       174 ~~~l~~ADIVIsa~g~p~-~i~~~~vk~g~vviDig~~  210 (272)
                      ++.+++||+||++|+.+. +++.+|+++|+.+..+|.+
T Consensus       189 ~~av~~aDiVvtaT~s~~p~i~~~~l~~g~~i~~vg~~  226 (326)
T TIGR02992       189 RAAMSGADIIVTTTPSETPILHAEWLEPGQHVTAMGSD  226 (326)
T ss_pred             HHHhccCCEEEEecCCCCcEecHHHcCCCcEEEeeCCC
Confidence            667899999999999765 4789999999999999865

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK13243 glyoxylate reductase; Reviewed

Probab=98.16  E-value=4.7e-06  Score=78.34  Aligned_cols=136  Identities=16%  Similarity=0.166  Sum_probs=89.0

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------CCHhhhcCCCcEEEEecCCC----ccccC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGVA----NLVRG  195 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t------------~~l~~~l~~ADIVIsa~g~p----~~i~~  195 (272)
                      .++.||++.|||.|.+ |+.++..|...|++|.+++++.            .++.+.+++||+|+.+++..    +++..
T Consensus       146 ~~L~gktvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~  224 (333)
T PRK13243        146 YDVYGKTIGIIGFGRI-GQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINE  224 (333)
T ss_pred             cCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCH
Confidence            4689999999999886 9999999999999999998652            25678899999999998842    35654


Q ss_pred             C---CcCCCcEEEEeeeCCCCCCCCCCCC--CCceEec---ccchhh------h-hhhceEeccCCCcccHHHHHHHHHH
Q 024116          196 S---WLKPGAVVLDVGTCPVDVSVDPSCE--YGYRLMG---DVCYEE------A-MRLASVITPVPGGVGPMTVAMLLSN  260 (272)
Q Consensus       196 ~---~vk~g~vviDig~~~~~~~~~~~~~--~~~k~~G---dvd~~~------~-~~~~~~~tpvpGGvGp~T~amL~~n  260 (272)
                      +   .+|+|+++||++.-..-++ +....  ..+++-|   ||-..+      + .-..-.+||=.||.-.-+..-+...
T Consensus       225 ~~~~~mk~ga~lIN~aRg~~vd~-~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~  303 (333)
T PRK13243        225 ERLKLMKPTAILVNTARGKVVDT-KALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAREGMAEL  303 (333)
T ss_pred             HHHhcCCCCeEEEECcCchhcCH-HHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHHHHHHHH
Confidence            4   4689999999987654210 00000  1234433   442111      1 1124467787777665444444444


Q ss_pred             HHHHHHHHh
Q 024116          261 TLDSAKRAY  269 (272)
Q Consensus       261 ~v~a~~~~~  269 (272)
                      +++..++|+
T Consensus       304 ~~~ni~~~~  312 (333)
T PRK13243        304 VAENLIAFK  312 (333)
T ss_pred             HHHHHHHHH
Confidence            444444443

>PRK06932 glycerate dehydrogenase; Provisional

Probab=98.13  E-value=4.3e-06  Score=78.00  Aligned_cols=135  Identities=21%  Similarity=0.242  Sum_probs=91.8

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------CCHhhhcCCCcEEEEecCC-C---ccccCCC--
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------KNPEQITSEADIVIAAAGV-A---NLVRGSW--  197 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------~~l~~~l~~ADIVIsa~g~-p---~~i~~~~--  197 (272)
                      .++.||++.|||.|.+ |+.++.+|...|++|...++..        .++.+.+++||+|+...+. |   ++|+.+.  
T Consensus       143 ~~l~gktvgIiG~G~I-G~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~  221 (314)
T PRK06932        143 TDVRGSTLGVFGKGCL-GTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLA  221 (314)
T ss_pred             cccCCCEEEEECCCHH-HHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHH
Confidence            3689999999999996 9999999999999998876542        2578999999999988873 2   4677664  


Q ss_pred             -cCCCcEEEEeeeCCCCCC---CCCCCCCCceE---ecccchhh-------hh-----hhceEeccCCCcccHHHHHHHH
Q 024116          198 -LKPGAVVLDVGTCPVDVS---VDPSCEYGYRL---MGDVCYEE-------AM-----RLASVITPVPGGVGPMTVAMLL  258 (272)
Q Consensus       198 -vk~g~vviDig~~~~~~~---~~~~~~~~~k~---~Gdvd~~~-------~~-----~~~~~~tpvpGGvGp~T~amL~  258 (272)
                       +|+|+++|+++--..-+.   .+.+.  .+++   .-||-..+       +.     -..-.+||=.||.-.-+..-+.
T Consensus       222 ~mk~ga~lIN~aRG~~Vde~AL~~aL~--~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~  299 (314)
T PRK06932        222 LMKPTAFLINTGRGPLVDEQALLDALE--NGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLV  299 (314)
T ss_pred             hCCCCeEEEECCCccccCHHHHHHHHH--cCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcHHHHHHHH
Confidence             589999999987654210   00110  1233   33542111       11     1235678888887766666666


Q ss_pred             HHHHHHHHHHh
Q 024116          259 SNTLDSAKRAY  269 (272)
Q Consensus       259 ~n~v~a~~~~~  269 (272)
                      ..+++..++++
T Consensus       300 ~~~~~ni~~~~  310 (314)
T PRK06932        300 NKVAQNIEEFV  310 (314)
T ss_pred             HHHHHHHHHHH
Confidence            66666666554

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=98.12  E-value=6e-06  Score=76.93  Aligned_cols=135  Identities=23%  Similarity=0.209  Sum_probs=90.8

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------CCHhhhcCCCcEEEEecCC-C---ccccCC--
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV-A---NLVRGS--  196 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t---------~~l~~~l~~ADIVIsa~g~-p---~~i~~~--  196 (272)
                      .++.||++.|||.|.+ |+.+|.+|..-|++|..++++.         .++.+.+++||+|+..++. |   ++|+.+  
T Consensus       141 ~~L~gktvGIiG~G~I-G~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~  219 (311)
T PRK08410        141 GEIKGKKWGIIGLGTI-GKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKEL  219 (311)
T ss_pred             cccCCCEEEEECCCHH-HHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHH
Confidence            4689999999999996 9999999999999999888642         2578999999999988873 2   467666  


Q ss_pred             -CcCCCcEEEEeeeCCCCCC---CCCCCCCCceE--ecccchhh-------hhh----hceEeccCCCcccHHHHHHHHH
Q 024116          197 -WLKPGAVVLDVGTCPVDVS---VDPSCEYGYRL--MGDVCYEE-------AMR----LASVITPVPGGVGPMTVAMLLS  259 (272)
Q Consensus       197 -~vk~g~vviDig~~~~~~~---~~~~~~~~~k~--~Gdvd~~~-------~~~----~~~~~tpvpGGvGp~T~amL~~  259 (272)
                       .+|+|+++|+++--..-++   .+.+.  .+++  .=||-..+       +..    -.-.+||=.||.-.-+..-+..
T Consensus       220 ~~Mk~~a~lIN~aRG~vVDe~AL~~AL~--~g~i~AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~  297 (311)
T PRK08410        220 KLLKDGAILINVGRGGIVNEKDLAKALD--EKDIYAGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIE  297 (311)
T ss_pred             HhCCCCeEEEECCCccccCHHHHHHHHH--cCCeEEEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHH
Confidence             4599999999987654210   01111  1333  34552111       111    1356788778876655555555


Q ss_pred             HHHHHHHHHh
Q 024116          260 NTLDSAKRAY  269 (272)
Q Consensus       260 n~v~a~~~~~  269 (272)
                      .+++..++|+
T Consensus       298 ~~~~nl~~~~  307 (311)
T PRK08410        298 KVKENIKDFL  307 (311)
T ss_pred             HHHHHHHHHH
Confidence            5555555554

>PRK06487 glycerate dehydrogenase; Provisional

Probab=98.12  E-value=5.3e-06  Score=77.49  Aligned_cols=135  Identities=17%  Similarity=0.195  Sum_probs=91.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------CCHhhhcCCCcEEEEecCC----CccccCCC---
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------KNPEQITSEADIVIAAAGV----ANLVRGSW---  197 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------~~l~~~l~~ADIVIsa~g~----p~~i~~~~---  197 (272)
                      .++.||++.|||.|.+ |+.++.+|...|++|...++..       .+|.+.+++||+|+...+.    .++|+.+.   
T Consensus       144 ~~l~gktvgIiG~G~I-G~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~  222 (317)
T PRK06487        144 VELEGKTLGLLGHGEL-GGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELAL  222 (317)
T ss_pred             cccCCCEEEEECCCHH-HHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhc
Confidence            3689999999999996 9999999999999998877542       2578999999999988873    34677664   


Q ss_pred             cCCCcEEEEeeeCCCCCC---CCCCCCCCceEe---cccchhh-------hh---hhceEeccCCCcccHHHHHHHHHHH
Q 024116          198 LKPGAVVLDVGTCPVDVS---VDPSCEYGYRLM---GDVCYEE-------AM---RLASVITPVPGGVGPMTVAMLLSNT  261 (272)
Q Consensus       198 vk~g~vviDig~~~~~~~---~~~~~~~~~k~~---Gdvd~~~-------~~---~~~~~~tpvpGGvGp~T~amL~~n~  261 (272)
                      +|+|+++|++|--..-++   .+.+.  .+++.   =||-..+       +-   -..-.+||=.+|...-+..-+...+
T Consensus       223 mk~ga~lIN~aRG~vVde~AL~~AL~--~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~  300 (317)
T PRK06487        223 MKPGALLINTARGGLVDEQALADALR--SGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQL  300 (317)
T ss_pred             CCCCeEEEECCCccccCHHHHHHHHH--cCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHH
Confidence            589999999997654210   00111  13332   3442111       11   1234678877887766666666656


Q ss_pred             HHHHHHHh
Q 024116          262 LDSAKRAY  269 (272)
Q Consensus       262 v~a~~~~~  269 (272)
                      ++..++|+
T Consensus       301 ~~ni~~~~  308 (317)
T PRK06487        301 AENARAFF  308 (317)
T ss_pred             HHHHHHHH
Confidence            66555554

>PRK06436 glycerate dehydrogenase; Provisional

Probab=98.10  E-value=6.4e-06  Score=76.54  Aligned_cols=80  Identities=18%  Similarity=0.326  Sum_probs=66.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------CCHhhhcCCCcEEEEecCC-C---ccccCC--
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV-A---NLVRGS--  196 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t---------~~l~~~l~~ADIVIsa~g~-p---~~i~~~--  196 (272)
                      .++.||++.|||.|.+ |++++.+|...|++|..++++.         .++++.+++||+|+...+. |   +++..+  
T Consensus       118 ~~L~gktvgIiG~G~I-G~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l  196 (303)
T PRK06436        118 KLLYNKSLGILGYGGI-GRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKML  196 (303)
T ss_pred             CCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCCcccCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHH
Confidence            4789999999999986 9999999999999999998752         3678889999999998883 2   356544  


Q ss_pred             -CcCCCcEEEEeeeCCC
Q 024116          197 -WLKPGAVVLDVGTCPV  212 (272)
Q Consensus       197 -~vk~g~vviDig~~~~  212 (272)
                       .+|+|+++|+++.-..
T Consensus       197 ~~mk~ga~lIN~sRG~~  213 (303)
T PRK06436        197 SLFRKGLAIINVARADV  213 (303)
T ss_pred             hcCCCCeEEEECCCccc
Confidence             4589999999997654

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=98.10  E-value=3.2e-05  Score=72.52  Aligned_cols=136  Identities=17%  Similarity=0.200  Sum_probs=90.9

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHH-hCCCEEEEEeCCC------------CCHhhhcCCCcEEEEecCC-C---ccc
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQ-RHHATVSIVHALT------------KNPEQITSEADIVIAAAGV-A---NLV  193 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~-~~ga~V~v~~~~t------------~~l~~~l~~ADIVIsa~g~-p---~~i  193 (272)
                      +.++.||++.|||.|.+ |+.++..|. ..|++|...++..            .++.+.+++||+|+...+. |   ++|
T Consensus       140 g~~L~gktvGIiG~G~I-G~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li  218 (323)
T PRK15409        140 GTDVHHKTLGIVGMGRI-GMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLF  218 (323)
T ss_pred             cCCCCCCEEEEEcccHH-HHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhcc
Confidence            45789999999999996 999999997 8899998776542            2578899999999988873 3   467


Q ss_pred             cCCC---cCCCcEEEEeeeCCCCCC---CCCCCCCCceEec---ccchhh-------hhh-hceEeccCCCcccHHHHHH
Q 024116          194 RGSW---LKPGAVVLDVGTCPVDVS---VDPSCEYGYRLMG---DVCYEE-------AMR-LASVITPVPGGVGPMTVAM  256 (272)
Q Consensus       194 ~~~~---vk~g~vviDig~~~~~~~---~~~~~~~~~k~~G---dvd~~~-------~~~-~~~~~tpvpGGvGp~T~am  256 (272)
                      ..+.   +|+|+++|+++--..-+.   .+.+.  .+++.|   ||-..+       +.+ ..-.+||=.||.-.=+..-
T Consensus       219 ~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~--~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~  296 (323)
T PRK15409        219 GAEQFAKMKSSAIFINAGRGPVVDENALIAALQ--KGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYN  296 (323)
T ss_pred             CHHHHhcCCCCeEEEECCCccccCHHHHHHHHH--cCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHH
Confidence            6654   589999999987654210   01111  234433   442211       111 2446788788876555555


Q ss_pred             HHHHHHHHHHHHh
Q 024116          257 LLSNTLDSAKRAY  269 (272)
Q Consensus       257 L~~n~v~a~~~~~  269 (272)
                      +....++...+|+
T Consensus       297 ~~~~~~~ni~~~~  309 (323)
T PRK15409        297 MAACAVDNLIDAL  309 (323)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555566555554

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=98.09  E-value=6.4e-06  Score=72.19  Aligned_cols=113  Identities=19%  Similarity=0.286  Sum_probs=73.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-CCH-----------------hhhcCCCcEEEEecCCCcc-
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-KNP-----------------EQITSEADIVIAAAGVANL-  192 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-~~l-----------------~~~l~~ADIVIsa~g~p~~-  192 (272)
                      ++++||+|+|||+|.+ |...+..|...|+.|++++++. +.+                 .+.+..+|+||+||+.+.+ 
T Consensus         6 l~l~~k~vLVIGgG~v-a~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN   84 (202)
T PRK06718          6 IDLSNKRVVIVGGGKV-AGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVN   84 (202)
T ss_pred             EEcCCCEEEEECCCHH-HHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHH
Confidence            5789999999999985 9999999999999999997652 111                 3457889999999998763 


Q ss_pred             --ccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhh---hceEeccCCCcccHHHHHHHHHHHHH
Q 024116          193 --VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMR---LASVITPVPGGVGPMTVAMLLSNTLD  263 (272)
Q Consensus       193 --i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~---~~~~~tpvpGGvGp~T~amL~~n~v~  263 (272)
                        +.... +.+. .+++.-+|..              +|+-+.++.+   ..-.++  -||-+|..+..|-+++-.
T Consensus        85 ~~i~~~a-~~~~-lvn~~d~~~~--------------~~f~~Pa~~~~g~l~iaIs--T~G~sP~la~~lr~~ie~  142 (202)
T PRK06718         85 EQVKEDL-PENA-LFNVITDAES--------------GNVVFPSALHRGKLTISVS--TDGASPKLAKKIRDELEA  142 (202)
T ss_pred             HHHHHHH-HhCC-cEEECCCCcc--------------CeEEEeeEEEcCCeEEEEE--CCCCChHHHHHHHHHHHH
Confidence              43222 3443 4455434322              2222222111   122333  478899888776555543

>PRK07574 formate dehydrogenase; Provisional

Probab=98.08  E-value=7.3e-06  Score=78.57  Aligned_cols=135  Identities=16%  Similarity=0.192  Sum_probs=91.8

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCC-C---ccc
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGV-A---NLV  193 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~-p---~~i  193 (272)
                      .++.||+|.|||.|.+ |+.++..|...|++|..++++.              .++++.+++||+|+...+. |   +++
T Consensus       188 ~~L~gktVGIvG~G~I-G~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li  266 (385)
T PRK07574        188 YDLEGMTVGIVGAGRI-GLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLF  266 (385)
T ss_pred             eecCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHh
Confidence            4689999999999996 9999999999999999998753              3577889999999999883 3   356


Q ss_pred             cCC---CcCCCcEEEEeeeCCCCCC---CCCCCCCCce---Eecccchhh--------hhhhceEeccCCCcccHHHHHH
Q 024116          194 RGS---WLKPGAVVLDVGTCPVDVS---VDPSCEYGYR---LMGDVCYEE--------AMRLASVITPVPGGVGPMTVAM  256 (272)
Q Consensus       194 ~~~---~vk~g~vviDig~~~~~~~---~~~~~~~~~k---~~Gdvd~~~--------~~~~~~~~tpvpGGvGp~T~am  256 (272)
                      +.+   .+|+|+++|+++.-..-+.   .+...  .++   ...||-+.+        ..-..-.+||=.+|.-.-+..-
T Consensus       267 ~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~--sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~  344 (385)
T PRK07574        267 DADVLSRMKRGSYLVNTARGKIVDRDAVVRALE--SGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQAR  344 (385)
T ss_pred             CHHHHhcCCCCcEEEECCCCchhhHHHHHHHHH--hCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHH
Confidence            655   4589999999987653210   00010  122   345663221        0112446788888876655555


Q ss_pred             HHHHHHHHHHHHh
Q 024116          257 LLSNTLDSAKRAY  269 (272)
Q Consensus       257 L~~n~v~a~~~~~  269 (272)
                      +...+++..++|+
T Consensus       345 ~~~~~~~ni~~~~  357 (385)
T PRK07574        345 YAAGTREILECFF  357 (385)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555554

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=98.05  E-value=9.8e-06  Score=75.60  Aligned_cols=80  Identities=13%  Similarity=0.101  Sum_probs=65.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------CCHhhhcCCCcEEEEecCC-C---ccccC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGV-A---NLVRG  195 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t------------~~l~~~l~~ADIVIsa~g~-p---~~i~~  195 (272)
                      .+++||++.|||.|.+ |+.++..|...|++|+..+++.            .++.+.+++||+|+...+. |   +++..
T Consensus       132 ~~l~g~tvgIvG~G~I-G~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~  210 (312)
T PRK15469        132 YHREDFTIGILGAGVL-GSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQ  210 (312)
T ss_pred             CCcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHH
Confidence            4689999999999996 9999999999999999887643            2577889999999998884 2   24554


Q ss_pred             C---CcCCCcEEEEeeeCCC
Q 024116          196 S---WLKPGAVVLDVGTCPV  212 (272)
Q Consensus       196 ~---~vk~g~vviDig~~~~  212 (272)
                      +   .+|+|+++|++|--..
T Consensus       211 ~~l~~mk~ga~lIN~aRG~v  230 (312)
T PRK15469        211 QLLEQLPDGAYLLNLARGVH  230 (312)
T ss_pred             HHHhcCCCCcEEEECCCccc
Confidence            4   4588999999997654

>PRK08291 ectoine utilization protein EutC; Validated

Probab=98.04  E-value=1.7e-05  Score=74.44  Aligned_cols=91  Identities=18%  Similarity=0.262  Sum_probs=69.7

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHh-CC-CEEEEEeCCC---------------------CCH
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR-HH-ATVSIVHALT---------------------KNP  173 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~-~g-a~V~v~~~~t---------------------~~l  173 (272)
                      .+.+.+++......  .-..++++|||+|+. |+..+..|.. ++ .+|++++|+.                     .++
T Consensus       115 rT~a~~~~a~~~la--~~~~~~v~IiGaG~~-a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~  191 (330)
T PRK08291        115 RTAAAGAVAARHLA--REDASRAAVIGAGEQ-ARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDV  191 (330)
T ss_pred             HHHHHHHHHHHHhC--CCCCCEEEEECCCHH-HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCH
Confidence            44456666665321  335689999999997 9998888774 55 5899998862                     345


Q ss_pred             hhhcCCCcEEEEecCCCc-cccCCCcCCCcEEEEeeeC
Q 024116          174 EQITSEADIVIAAAGVAN-LVRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       174 ~~~l~~ADIVIsa~g~p~-~i~~~~vk~g~vviDig~~  210 (272)
                      ++.+++||+||++|+... +++.+|+++|+.|..+|.+
T Consensus       192 ~~al~~aDiVi~aT~s~~p~i~~~~l~~g~~v~~vg~d  229 (330)
T PRK08291        192 HEAVAGADIIVTTTPSEEPILKAEWLHPGLHVTAMGSD  229 (330)
T ss_pred             HHHHccCCEEEEeeCCCCcEecHHHcCCCceEEeeCCC
Confidence            677899999999999765 4788999999999998875

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=98.03  E-value=1.1e-05  Score=75.78  Aligned_cols=137  Identities=22%  Similarity=0.282  Sum_probs=93.2

Q ss_pred             hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEEEEecCC----Ccc
Q 024116          130 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGV----ANL  192 (272)
Q Consensus       130 ~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIVIsa~g~----p~~  192 (272)
                      .+.++.||++-|||.|.+ |+.++..|...|++|..+++..             .+|.+.+++||+|+.-++.    -++
T Consensus       136 ~g~el~gkTvGIiG~G~I-G~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~  214 (324)
T COG0111         136 RGTELAGKTVGIIGLGRI-GRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGL  214 (324)
T ss_pred             ccccccCCEEEEECCCHH-HHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcc
Confidence            356888999999999996 9999999999999999998842             3588999999999988873    246


Q ss_pred             ccCCC---cCCCcEEEEeeeCCCCCC---CCCCCCCCceEec---ccchhh-------hhh-hceEeccCCCcccHHHHH
Q 024116          193 VRGSW---LKPGAVVLDVGTCPVDVS---VDPSCEYGYRLMG---DVCYEE-------AMR-LASVITPVPGGVGPMTVA  255 (272)
Q Consensus       193 i~~~~---vk~g~vviDig~~~~~~~---~~~~~~~~~k~~G---dvd~~~-------~~~-~~~~~tpvpGGvGp~T~a  255 (272)
                      ++.+.   +|+|+++|+++--..-+.   .+...  .|++-|   ||-..+       +-. -.-.+||=.||..--+..
T Consensus       215 i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~--~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~  292 (324)
T COG0111         215 INAEELAKMKPGAILINAARGGVVDEDALLAALD--SGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQE  292 (324)
T ss_pred             cCHHHHhhCCCCeEEEECCCcceecHHHHHHHHH--cCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHH
Confidence            76654   589999999986653110   00000  122221   332111       111 134568888888766666


Q ss_pred             HHHHHHHHHHHHHh
Q 024116          256 MLLSNTLDSAKRAY  269 (272)
Q Consensus       256 mL~~n~v~a~~~~~  269 (272)
                      .+...+++...+++
T Consensus       293 ~~~~~~~~~i~~~l  306 (324)
T COG0111         293 RVAEIVAENIVRYL  306 (324)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666666666554

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=98.03  E-value=9.6e-06  Score=76.19  Aligned_cols=80  Identities=20%  Similarity=0.320  Sum_probs=65.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------CCHhhhcCCCcEEEEecCCC----ccccCC-
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------KNPEQITSEADIVIAAAGVA----NLVRGS-  196 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t----------~~l~~~l~~ADIVIsa~g~p----~~i~~~-  196 (272)
                      .++.|+++.|||.|.+ |++++.+|...|++|+.++++.          .++.+.+++||+|+.+++..    +++..+ 
T Consensus       142 ~~l~g~~VgIIG~G~I-G~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~  220 (330)
T PRK12480        142 KPVKNMTVAIIGTGRI-GAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAM  220 (330)
T ss_pred             cccCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHH
Confidence            4689999999999986 9999999999999999998653          36788999999999999853    245433 


Q ss_pred             --CcCCCcEEEEeeeCCC
Q 024116          197 --WLKPGAVVLDVGTCPV  212 (272)
Q Consensus       197 --~vk~g~vviDig~~~~  212 (272)
                        .+++|+++|+++--..
T Consensus       221 l~~mk~gavlIN~aRG~~  238 (330)
T PRK12480        221 FDHVKKGAILVNAARGAV  238 (330)
T ss_pred             HhcCCCCcEEEEcCCccc
Confidence              4588999999986654

>PLN02306 hydroxypyruvate reductase

Probab=97.99  E-value=1.3e-05  Score=76.96  Aligned_cols=80  Identities=20%  Similarity=0.290  Sum_probs=64.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHH-hCCCEEEEEeCCC----------------------------CCHhhhcCCCcE
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQ-RHHATVSIVHALT----------------------------KNPEQITSEADI  182 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~-~~ga~V~v~~~~t----------------------------~~l~~~l~~ADI  182 (272)
                      .++.||++.|||.|.+ |+.++.+|. ..|++|...+++.                            .+|.+.+++||+
T Consensus       161 ~~L~gktvGIiG~G~I-G~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDi  239 (386)
T PLN02306        161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADV  239 (386)
T ss_pred             cCCCCCEEEEECCCHH-HHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCE
Confidence            4689999999999996 999999985 8899998876431                            367889999999


Q ss_pred             EEEecCC----CccccCCC---cCCCcEEEEeeeCCC
Q 024116          183 VIAAAGV----ANLVRGSW---LKPGAVVLDVGTCPV  212 (272)
Q Consensus       183 VIsa~g~----p~~i~~~~---vk~g~vviDig~~~~  212 (272)
                      |+..++.    .++|+.+.   +|+|+++|+++--..
T Consensus       240 V~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~l  276 (386)
T PLN02306        240 ISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPV  276 (386)
T ss_pred             EEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccc
Confidence            9988773    24677664   589999999996543

>PRK08605 D-lactate dehydrogenase; Validated

Probab=97.99  E-value=1.7e-05  Score=74.49  Aligned_cols=80  Identities=23%  Similarity=0.299  Sum_probs=64.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHH-HhCCCEEEEEeCCC-----------CCHhhhcCCCcEEEEecCCC----ccccC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLL-QRHHATVSIVHALT-----------KNPEQITSEADIVIAAAGVA----NLVRG  195 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L-~~~ga~V~v~~~~t-----------~~l~~~l~~ADIVIsa~g~p----~~i~~  195 (272)
                      .++.|++|.|||.|.+ |+.++.+| ...|++|+..+++.           .++.+.+++||+|+.+++..    +++..
T Consensus       142 ~~l~g~~VgIIG~G~I-G~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~  220 (332)
T PRK08605        142 RSIKDLKVAVIGTGRI-GLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNA  220 (332)
T ss_pred             ceeCCCEEEEECCCHH-HHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCH
Confidence            4689999999999885 99999999 56788999887642           36788999999999998742    34543


Q ss_pred             ---CCcCCCcEEEEeeeCCC
Q 024116          196 ---SWLKPGAVVLDVGTCPV  212 (272)
Q Consensus       196 ---~~vk~g~vviDig~~~~  212 (272)
                         +.+++|+++||++.-..
T Consensus       221 ~~l~~mk~gailIN~sRG~~  240 (332)
T PRK08605        221 DLFKHFKKGAVFVNCARGSL  240 (332)
T ss_pred             HHHhcCCCCcEEEECCCCcc
Confidence               45689999999987654

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.97  E-value=3.7e-05  Score=71.97  Aligned_cols=76  Identities=17%  Similarity=0.177  Sum_probs=61.8

Q ss_pred             CccceEEEEcCCcccHHHHHHHHH-hCCC-EEEEEeCCC---------------------CCHhhhcCCCcEEEEecCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQ-RHHA-TVSIVHALT---------------------KNPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~-~~ga-~V~v~~~~t---------------------~~l~~~l~~ADIVIsa~g~p  190 (272)
                      ...++++|||.|+. |+..+..+. .+++ +|.+++|+.                     .++++.+++||+||++|+.+
T Consensus       125 ~~~~~v~iiGaG~~-a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~  203 (325)
T PRK08618        125 EDAKTLCLIGTGGQ-AKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK  203 (325)
T ss_pred             CCCcEEEEECCcHH-HHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC
Confidence            36789999999997 998887665 4564 799998762                     24567789999999999987


Q ss_pred             cc-ccCCCcCCCcEEEEeeeCC
Q 024116          191 NL-VRGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       191 ~~-i~~~~vk~g~vviDig~~~  211 (272)
                      +. ++ +|+++|+.|+-+|.+.
T Consensus       204 ~p~i~-~~l~~G~hV~~iGs~~  224 (325)
T PRK08618        204 TPVFS-EKLKKGVHINAVGSFM  224 (325)
T ss_pred             CcchH-HhcCCCcEEEecCCCC
Confidence            75 78 9999999999998753

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.94  E-value=2.3e-05  Score=77.54  Aligned_cols=90  Identities=23%  Similarity=0.315  Sum_probs=67.7

Q ss_pred             HHHHHHHHHhCC----------CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------
Q 024116          121 KGCIELLIRSGV----------EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------  171 (272)
Q Consensus       121 ~g~~~~l~~~~~----------~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------------  171 (272)
                      .|+++....++.          ...+.+|+|+|+|.+ |..++..+...||.|++++++..                   
T Consensus       140 ~Av~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~i-GL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e  218 (509)
T PRK09424        140 RAVIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVA-GLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEE  218 (509)
T ss_pred             HHHHHHHHHhcccCCCceeccCCcCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEecccc
Confidence            667777766653          246999999999885 99999999999999988875420                   


Q ss_pred             --------------C--------HhhhcCCCcEEEEecCCCc-----cccCCC---cCCCcEEEEeeeCC
Q 024116          172 --------------N--------PEQITSEADIVIAAAGVAN-----LVRGSW---LKPGAVVLDVGTCP  211 (272)
Q Consensus       172 --------------~--------l~~~l~~ADIVIsa~g~p~-----~i~~~~---vk~g~vviDig~~~  211 (272)
                                    +        +.+.++.+|+||+++|.|.     +++.++   +++|.+|+|+|.++
T Consensus       219 ~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~  288 (509)
T PRK09424        219 EGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAEN  288 (509)
T ss_pred             ccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCC
Confidence                          0        0112357999999999754     555655   48999999999864

>PLN03139 formate dehydrogenase; Provisional

Probab=97.92  E-value=2e-05  Score=75.51  Aligned_cols=135  Identities=16%  Similarity=0.236  Sum_probs=92.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCC----ccc
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVA----NLV  193 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p----~~i  193 (272)
                      .++.||++.|||.|.+ |+.++..|...|++|..++++.              .++++.+++||+|+...+..    +++
T Consensus       195 ~~L~gktVGIVG~G~I-G~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li  273 (386)
T PLN03139        195 YDLEGKTVGTVGAGRI-GRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMF  273 (386)
T ss_pred             cCCCCCEEEEEeecHH-HHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHh
Confidence            4689999999999996 9999999999999999888642              26788999999999888742    356


Q ss_pred             cCC---CcCCCcEEEEeeeCCCCCC---CCCCCCCCce---Eecccchhh-h-------hhhceEeccCCCcccHHHHHH
Q 024116          194 RGS---WLKPGAVVLDVGTCPVDVS---VDPSCEYGYR---LMGDVCYEE-A-------MRLASVITPVPGGVGPMTVAM  256 (272)
Q Consensus       194 ~~~---~vk~g~vviDig~~~~~~~---~~~~~~~~~k---~~Gdvd~~~-~-------~~~~~~~tpvpGGvGp~T~am  256 (272)
                      +++   .+|+|+++|+++--..-+.   .+...  .++   ...||-+.+ .       .-..-.+||=.+|.-.-+..-
T Consensus       274 ~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~--sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r  351 (386)
T PLN03139        274 NKERIAKMKKGVLIVNNARGAIMDTQAVADACS--SGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLR  351 (386)
T ss_pred             CHHHHhhCCCCeEEEECCCCchhhHHHHHHHHH--cCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHH
Confidence            655   4589999999987654210   00000  123   345764322 0       012457788778876655555


Q ss_pred             HHHHHHHHHHHHh
Q 024116          257 LLSNTLDSAKRAY  269 (272)
Q Consensus       257 L~~n~v~a~~~~~  269 (272)
                      +...+++..++|+
T Consensus       352 ~~~~~~~nl~~~~  364 (386)
T PLN03139        352 YAAGVKDMLDRYF  364 (386)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555566666654

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=97.91  E-value=6.5e-06  Score=69.78  Aligned_cols=78  Identities=26%  Similarity=0.332  Sum_probs=57.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------------------------------CC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------------------KN  172 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t----------------------------------------~~  172 (272)
                      .+...+|+|+|+|. ||+.++..|...|++|++.+...                                        ..
T Consensus        17 ~~~p~~vvv~G~G~-vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
T PF01262_consen   17 GVPPAKVVVTGAGR-VGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN   95 (168)
T ss_dssp             EE-T-EEEEESTSH-HHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred             CCCCeEEEEECCCH-HHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence            35678999999988 59999999999999999997541                                        12


Q ss_pred             HhhhcCCCcEEEEecC-----CCccccCCCc---CCCcEEEEeeeCC
Q 024116          173 PEQITSEADIVIAAAG-----VANLVRGSWL---KPGAVVLDVGTCP  211 (272)
Q Consensus       173 l~~~l~~ADIVIsa~g-----~p~~i~~~~v---k~g~vviDig~~~  211 (272)
                      +.+.++.+|+||++.-     .|.+++.+|+   +++++|+|+..+.
T Consensus        96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~D~  142 (168)
T PF01262_consen   96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISCDQ  142 (168)
T ss_dssp             HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTGGG
T ss_pred             HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEecC
Confidence            4577899999996552     4668888875   7899999998763

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.89  E-value=2.4e-05  Score=75.60  Aligned_cols=80  Identities=21%  Similarity=0.360  Sum_probs=66.4

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------CCHhhhcCCCcEEEEecCC-C---ccccCC
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------KNPEQITSEADIVIAAAGV-A---NLVRGS  196 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t----------~~l~~~l~~ADIVIsa~g~-p---~~i~~~  196 (272)
                      +.++.||++.|||.|.+ |+.+|..|...|++|..++++.          .++++.+++||+|+...+. +   ++++.+
T Consensus       146 ~~~L~gktvGIiG~G~I-G~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~  224 (409)
T PRK11790        146 SFEVRGKTLGIVGYGHI-GTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAE  224 (409)
T ss_pred             cccCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHH
Confidence            35789999999999996 9999999999999999987642          2688999999999988873 2   367665


Q ss_pred             ---CcCCCcEEEEeeeCC
Q 024116          197 ---WLKPGAVVLDVGTCP  211 (272)
Q Consensus       197 ---~vk~g~vviDig~~~  211 (272)
                         .+|+|+++|+++--.
T Consensus       225 ~l~~mk~ga~lIN~aRG~  242 (409)
T PRK11790        225 ELALMKPGAILINASRGT  242 (409)
T ss_pred             HHhcCCCCeEEEECCCCc
Confidence               458999999999544

>PRK12862 malic enzyme; Reviewed

Probab=97.86  E-value=7.4e-05  Score=77.30  Aligned_cols=169  Identities=14%  Similarity=0.175  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHc-CCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCcccccccc
Q 024116           26 VRNKIKACEEV-GIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIG  104 (272)
Q Consensus        26 ~~~~~~~~~~~-Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~~~~n~g  104 (272)
                      ...|.-.++.+ ||++.-+++... +.+|+.+.++.+-  |++.||++.==  ..-+--++++.+...-|+--||     
T Consensus        97 ~egK~~l~~~~~gi~~~~i~~~~~-d~d~~v~~v~~~~--p~f~~i~~ED~--~~~~~f~i~~~~~~~~~ip~f~-----  166 (763)
T PRK12862         97 MEGKAVLFKKFAGIDVFDIELDES-DPDKLVEIVAALE--PTFGGINLEDI--KAPECFYIERELRERMKIPVFH-----  166 (763)
T ss_pred             HHHHHHHHHhhcCCCccccccCCC-CHHHHHHHHHHhC--CCcceeeeecc--cCchHHHHHHHHHhcCCCceEe-----
Confidence            34566666665 588777777644 6899999999887  78889887311  0112233444443333333332     


Q ss_pred             ccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC---EEEEEeCCC-----------
Q 024116          105 NLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHALT-----------  170 (272)
Q Consensus       105 ~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga---~V~v~~~~t-----------  170 (272)
                           ++..+---.+..|++..++-.+.+++.-++++.|+|.+ |-.++.+|...|.   .+++|+++-           
T Consensus       167 -----DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaa-g~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~  240 (763)
T PRK12862        167 -----DDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAA-ALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMD  240 (763)
T ss_pred             -----cCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHH-HHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCcccc
Confidence                 12333223455778999999999999999999999998 9999999999997   689998541           


Q ss_pred             ------------CCHhhhcCCCcEEEEecCCCccccCCCcCC---CcEEEEeeeCCC
Q 024116          171 ------------KNPEQITSEADIVIAAAGVANLVRGSWLKP---GAVVLDVGTCPV  212 (272)
Q Consensus       171 ------------~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~---g~vviDig~~~~  212 (272)
                                  .+|.+.++.+|++|-..+ |+.++++|++.   .-+|+=+. ||.
T Consensus       241 ~~~~~~a~~~~~~~l~e~~~~~~v~iG~s~-~g~~~~~~v~~M~~~piifals-NP~  295 (763)
T PRK12862        241 PWKARYAQKTDARTLAEVIEGADVFLGLSA-AGVLKPEMVKKMAPRPLIFALA-NPT  295 (763)
T ss_pred             HHHHHHhhhcccCCHHHHHcCCCEEEEcCC-CCCCCHHHHHHhccCCEEEeCC-CCc
Confidence                        357899999999997777 89999999854   66777776 543

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=97.84  E-value=0.00013  Score=75.17  Aligned_cols=169  Identities=15%  Similarity=0.176  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHcC-CeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCcccccccc
Q 024116           26 VRNKIKACEEVG-IKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIG  104 (272)
Q Consensus        26 ~~~~~~~~~~~G-i~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~~~~n~g  104 (272)
                      ...|.-.++.+| |++.-+.+... +.+|+.+.++.+-  |++.||++.==-.+  +--++++.+...-|+--+|.    
T Consensus        89 ~egK~~l~~~~~gid~~~i~~~~~-d~de~v~~v~~~~--p~~g~i~~ED~~~p--~~f~i~~~~~~~~~ip~f~D----  159 (752)
T PRK07232         89 MEGKGVLFKKFAGIDVFDIEVDEE-DPDKFIEAVAALE--PTFGGINLEDIKAP--ECFYIEEKLRERMDIPVFHD----  159 (752)
T ss_pred             HHHHHHHHHhhcCCCccccccCCC-CHHHHHHHHHHhC--CCccEEeeeecCCc--hHHHHHHHHHHhcCCCeecc----
Confidence            446666676664 88777777544 6789999998886  78889987321111  22334444333323333332    


Q ss_pred             ccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC---EEEEEeCCC-----------
Q 024116          105 NLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHALT-----------  170 (272)
Q Consensus       105 ~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga---~V~v~~~~t-----------  170 (272)
                            +..+---.+..|++..++-.+.+++.-++++.|+|.+ |-.++.+|...|.   .+++|+++-           
T Consensus       160 ------D~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaa-g~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~  232 (752)
T PRK07232        160 ------DQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAA-AIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMD  232 (752)
T ss_pred             ------ccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHH-HHHHHHHHHHcCCCcccEEEEcCCCeecCCCccccc
Confidence                  2223223345778899999999999999999999998 9999999999997   689997541           


Q ss_pred             ------------CCHhhhcCCCcEEEEecCCCccccCCCcCC---CcEEEEeeeCCC
Q 024116          171 ------------KNPEQITSEADIVIAAAGVANLVRGSWLKP---GAVVLDVGTCPV  212 (272)
Q Consensus       171 ------------~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~---g~vviDig~~~~  212 (272)
                                  .+|.+.++.+|++|-..+ |+.++++|++.   .-+|+=+. ||.
T Consensus       233 ~~k~~~a~~~~~~~l~~~i~~~~v~iG~s~-~g~~~~~~v~~M~~~piifals-NP~  287 (752)
T PRK07232        233 EWKAAYAVDTDARTLAEAIEGADVFLGLSA-AGVLTPEMVKSMADNPIIFALA-NPD  287 (752)
T ss_pred             HHHHHHhccCCCCCHHHHHcCCCEEEEcCC-CCCCCHHHHHHhccCCEEEecC-CCC
Confidence                        367899999999997766 88999999854   66777776 543

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.83  E-value=2.5e-05  Score=65.77  Aligned_cols=74  Identities=22%  Similarity=0.342  Sum_probs=55.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCc----c-cc---
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----L-VR---  194 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~----~-i~---  194 (272)
                      ++|-+||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||++++.+.    . ..   
T Consensus         2 ~~Ig~IGlG~m-G~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i   80 (163)
T PF03446_consen    2 MKIGFIGLGNM-GSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENI   80 (163)
T ss_dssp             BEEEEE--SHH-HHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred             CEEEEEchHHH-HHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHH
Confidence            58999999986 9999999999999999999873              467888999999999998643    2 23   


Q ss_pred             CCCcCCCcEEEEeeeCC
Q 024116          195 GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       195 ~~~vk~g~vviDig~~~  211 (272)
                      ...+++|.++||+....
T Consensus        81 ~~~l~~g~iiid~sT~~   97 (163)
T PF03446_consen   81 LAGLRPGKIIIDMSTIS   97 (163)
T ss_dssp             GGGS-TTEEEEE-SS--
T ss_pred             hhccccceEEEecCCcc
Confidence            23457899999998653

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.83  E-value=0.00012  Score=68.00  Aligned_cols=78  Identities=15%  Similarity=0.135  Sum_probs=63.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHh-CCC-EEEEEeCCC-------------------CCHhhhcCCCcEEEEecCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQR-HHA-TVSIVHALT-------------------KNPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~-~ga-~V~v~~~~t-------------------~~l~~~l~~ADIVIsa~g~p  190 (272)
                      -+...++++|+|+|.. |+..+..+.. ++. +|.+++|+.                   .++++.+++|||||++|+++
T Consensus       121 a~~~~~~v~IiGaG~q-a~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~  199 (304)
T PRK07340        121 APAPPGDLLLIGTGVQ-ARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR  199 (304)
T ss_pred             CCCCCCEEEEECCcHH-HHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC
Confidence            3457899999999996 9999998865 554 799998862                   24667889999999999987


Q ss_pred             cc-ccCCCcCCCcEEEEeeeCC
Q 024116          191 NL-VRGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       191 ~~-i~~~~vk~g~vviDig~~~  211 (272)
                      +. ++. |++||+.|.=+|.+.
T Consensus       200 ~Pl~~~-~~~~g~hi~~iGs~~  220 (304)
T PRK07340        200 TPVYPE-AARAGRLVVAVGAFT  220 (304)
T ss_pred             CceeCc-cCCCCCEEEecCCCC
Confidence            75 565 899999999999653

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=97.83  E-value=3.8e-05  Score=76.45  Aligned_cols=81  Identities=19%  Similarity=0.313  Sum_probs=66.7

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEEEEecCCC----ccc
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVA----NLV  193 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIVIsa~g~p----~~i  193 (272)
                      +.++.||++.|||.|.+ |+.+|..|...|++|..++++.             .++.+.+++||+|+..++..    +++
T Consensus       133 g~~l~gktvgIiG~G~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li  211 (525)
T TIGR01327       133 GTELYGKTLGVIGLGRI-GSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLI  211 (525)
T ss_pred             ccccCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCc
Confidence            45789999999999996 9999999999999999988631             36889999999999988832    356


Q ss_pred             cCC---CcCCCcEEEEeeeCCC
Q 024116          194 RGS---WLKPGAVVLDVGTCPV  212 (272)
Q Consensus       194 ~~~---~vk~g~vviDig~~~~  212 (272)
                      +++   .+|+|+++||++.-..
T Consensus       212 ~~~~l~~mk~ga~lIN~aRG~~  233 (525)
T TIGR01327       212 GAEELAKMKKGVIIVNCARGGI  233 (525)
T ss_pred             CHHHHhcCCCCeEEEEcCCCce
Confidence            544   4589999999997654

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.82  E-value=2.9e-05  Score=65.43  Aligned_cols=59  Identities=22%  Similarity=0.253  Sum_probs=47.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-CCH--------------hhhcCCCcEEEEecCCCc
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-KNP--------------EQITSEADIVIAAAGVAN  191 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-~~l--------------~~~l~~ADIVIsa~g~p~  191 (272)
                      ++++|++|+|||+|.. |.-.+..|.+.|++|++++... +++              ++.+.++|+||.||+.+.
T Consensus         9 l~l~~~~vlVvGGG~v-a~rka~~Ll~~ga~V~VIsp~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e   82 (157)
T PRK06719          9 FNLHNKVVVIIGGGKI-AYRKASGLKDTGAFVTVVSPEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHA   82 (157)
T ss_pred             EEcCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEcCccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHH
Confidence            5789999999999885 9999999999999999985431 111              234788999999998765

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.82  E-value=8.4e-05  Score=69.26  Aligned_cols=77  Identities=25%  Similarity=0.317  Sum_probs=59.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHh-CC-CEEEEEeCCC--------------------CCHhhhcCCCcEEEEecCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQR-HH-ATVSIVHALT--------------------KNPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~-~g-a~V~v~~~~t--------------------~~l~~~l~~ADIVIsa~g~p  190 (272)
                      ....++++|||.|.. |++.+..+.. ++ .+|++++|+.                    .++++.+++|||||++|+.+
T Consensus       122 ~~~~~~v~iiG~G~~-a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~  200 (314)
T PRK06141        122 RKDASRLLVVGTGRL-ASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST  200 (314)
T ss_pred             CCCCceEEEECCcHH-HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC
Confidence            357899999999996 9999875554 45 5899999862                    23556788999999999977


Q ss_pred             cc-ccCCCcCCCcEEEEeeeC
Q 024116          191 NL-VRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       191 ~~-i~~~~vk~g~vviDig~~  210 (272)
                      .. ++.+|+++|++|.=+|.+
T Consensus       201 ~pvl~~~~l~~g~~i~~ig~~  221 (314)
T PRK06141        201 EPLVRGEWLKPGTHLDLVGNF  221 (314)
T ss_pred             CCEecHHHcCCCCEEEeeCCC
Confidence            65 788999999955445543

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.79  E-value=4.8e-05  Score=75.75  Aligned_cols=80  Identities=19%  Similarity=0.310  Sum_probs=66.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------CCHhhhcCCCcEEEEecCCC----ccccC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGVA----NLVRG  195 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t------------~~l~~~l~~ADIVIsa~g~p----~~i~~  195 (272)
                      .++.||++.|||.|.+ |+.++..|...|++|..++++.            .++.+.+++||+|+..++..    +++.+
T Consensus       136 ~~l~gktvgIiG~G~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~  214 (526)
T PRK13581        136 VELYGKTLGIIGLGRI-GSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGA  214 (526)
T ss_pred             cccCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCH
Confidence            4689999999999996 9999999999999999998642            15678899999999998843    35655


Q ss_pred             C---CcCCCcEEEEeeeCCC
Q 024116          196 S---WLKPGAVVLDVGTCPV  212 (272)
Q Consensus       196 ~---~vk~g~vviDig~~~~  212 (272)
                      +   .+|+|+++|+++.-..
T Consensus       215 ~~l~~mk~ga~lIN~aRG~~  234 (526)
T PRK13581        215 EELAKMKPGVRIINCARGGI  234 (526)
T ss_pred             HHHhcCCCCeEEEECCCCce
Confidence            4   4589999999987654

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=97.77  E-value=0.00019  Score=68.92  Aligned_cols=168  Identities=17%  Similarity=0.276  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHc-CCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcC-CCCCCCCHHHHHhcCCcccccCcccccc
Q 024116           25 YVRNKIKACEEV-GIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQL-PLPQHLDEGKILDAVSLEKDVDGFHPLN  102 (272)
Q Consensus        25 Y~~~~~~~~~~~-Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~-Plp~~~~~~~i~~~i~p~KDvdg~~~~n  102 (272)
                      =...|.-.|+++ ||++.-+++... +.+|+.+.++.+.  |.+-|||++- -.|+.+   .+...+....||--+|.--
T Consensus       102 VmeGKa~Lfk~faGid~~pI~ld~~-~~~ei~~~Vkal~--p~FgginLedi~ap~cf---~ie~~lr~~~~IPvFhDDq  175 (432)
T COG0281         102 VMEGKAVLFKAFAGIDVLPIELDVG-TNNEIIEFVKALE--PTFGGINLEDIDAPRCF---AIEERLRYRMNIPVFHDDQ  175 (432)
T ss_pred             hhhhHHHHHHHhcCCCceeeEeeCC-ChHHHHHHHHHhh--hcCCCcceeecccchhh---HHHHHHhhcCCCCcccccc
Confidence            344666666654 789888888765 5678999999997  5799999863 222222   2333344455555544222


Q ss_pred             ccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC---EEEEEeCCC------CCH
Q 024116          103 IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHALT------KNP  173 (272)
Q Consensus       103 ~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga---~V~v~~~~t------~~l  173 (272)
                                .+=---|..|++..|+-.|.+++..++++.|+|-+ |-+++.+|...|.   +|++|+|+-      +++
T Consensus       176 ----------qGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAA-giaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~  244 (432)
T COG0281         176 ----------QGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAA-GIAIADLLVAAGVKEENIFVVDRKGLLYDGREDL  244 (432)
T ss_pred             ----------cHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHH-HHHHHHHHHHhCCCcccEEEEecCCcccCCCccc
Confidence                      22112244788999999999999999999999988 9999999999996   699998761      010


Q ss_pred             -------------------hhhcCCCcEEEEecCCCccccCCCcCC---CcEEEEeeeCC
Q 024116          174 -------------------EQITSEADIVIAAAGVANLVRGSWLKP---GAVVLDVGTCP  211 (272)
Q Consensus       174 -------------------~~~l~~ADIVIsa~g~p~~i~~~~vk~---g~vviDig~~~  211 (272)
                                         .+.+..+|++|...+. +.+++||++.   +-+|+=++ ||
T Consensus       245 ~~~~~k~~~a~~~~~~~~~~~~~~~adv~iG~S~~-G~~t~e~V~~Ma~~PiIfala-NP  302 (432)
T COG0281         245 TMNQKKYAKAIEDTGERTLDLALAGADVLIGVSGV-GAFTEEMVKEMAKHPIIFALA-NP  302 (432)
T ss_pred             ccchHHHHHHHhhhccccccccccCCCEEEEcCCC-CCcCHHHHHHhccCCEEeecC-CC
Confidence                               2356789999988777 8888888754   45666665 44

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.76  E-value=3.3e-05  Score=60.36  Aligned_cols=59  Identities=24%  Similarity=0.356  Sum_probs=46.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-----------CCHhhhcCCCcEEEEecCCCc
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------KNPEQITSEADIVIAAAGVAN  191 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-----------~~l~~~l~~ADIVIsa~g~p~  191 (272)
                      ++++||+|+|||.|.. |..-+..|++.||+|+++....           +.+++.+..+|+||.|++.+.
T Consensus         3 l~l~~~~vlVvGgG~v-a~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~   72 (103)
T PF13241_consen    3 LDLKGKRVLVVGGGPV-AARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDDPE   72 (103)
T ss_dssp             E--TT-EEEEEEESHH-HHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS-HH
T ss_pred             EEcCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCCHH
Confidence            5789999999999885 9999999999999999998762           345678899999999998765

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=97.72  E-value=6e-05  Score=70.72  Aligned_cols=135  Identities=19%  Similarity=0.234  Sum_probs=89.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------CCHhhhcCCCcEEEEecC-CC---ccccC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAG-VA---NLVRG  195 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t------------~~l~~~l~~ADIVIsa~g-~p---~~i~~  195 (272)
                      .+++||++-|||.|.+ |+++++.+..-|++|...+++.            -++.+.+++||+|+...+ .|   |+|.+
T Consensus       142 ~~l~gktvGIiG~GrI-G~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~  220 (324)
T COG1052         142 FDLRGKTLGIIGLGRI-GQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINA  220 (324)
T ss_pred             cCCCCCEEEEECCCHH-HHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCH
Confidence            5789999999999996 9999999998889999998763            137899999999998877 22   46776


Q ss_pred             C---CcCCCcEEEEeeeCCCCCC---CCCCCCCCce---Eecccchhh-------hhh-hc---eEeccCCCcccHHHHH
Q 024116          196 S---WLKPGAVVLDVGTCPVDVS---VDPSCEYGYR---LMGDVCYEE-------AMR-LA---SVITPVPGGVGPMTVA  255 (272)
Q Consensus       196 ~---~vk~g~vviDig~~~~~~~---~~~~~~~~~k---~~Gdvd~~~-------~~~-~~---~~~tpvpGGvGp~T~a  255 (272)
                      +   .+|+|+++|++|--..-+.   .+.+.  .++   .--||-..+       +.. ..   -.+||=.|+----|..
T Consensus       221 ~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~--~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~  298 (324)
T COG1052         221 EELAKMKPGAILVNTARGGLVDEQALIDALK--SGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARK  298 (324)
T ss_pred             HHHHhCCCCeEEEECCCccccCHHHHHHHHH--hCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHH
Confidence            6   4589999999986654210   00110  112   223443221       011 12   4567766666655666


Q ss_pred             HHHHHHHHHHHHHh
Q 024116          256 MLLSNTLDSAKRAY  269 (272)
Q Consensus       256 mL~~n~v~a~~~~~  269 (272)
                      -+...+++..+.|+
T Consensus       299 ~m~~~~~~nl~~~~  312 (324)
T COG1052         299 AMAELALENLEAFF  312 (324)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666666655554

>PRK12861 malic enzyme; Reviewed

Probab=97.60  E-value=0.00012  Score=75.38  Aligned_cols=166  Identities=14%  Similarity=0.213  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHc-CCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCH---HHHHhcCCcccccCccccc
Q 024116           26 VRNKIKACEEV-GIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDE---GKILDAVSLEKDVDGFHPL  101 (272)
Q Consensus        26 ~~~~~~~~~~~-Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~---~~i~~~i~p~KDvdg~~~~  101 (272)
                      ...|.-.|+.+ ||++.-+.+.. .+++|+++.++.+..  .+-||++.     .+..   -++++.+...-|+-.||. 
T Consensus        93 meGK~~L~~~~agid~~di~~~~-~dpd~~v~~v~a~~~--~fg~i~lE-----D~~~p~~f~il~~~~~~~~ipvf~D-  163 (764)
T PRK12861         93 MEGKAVLFKKFAGIDVFDIEINE-TDPDKLVDIIAGLEP--TFGGINLE-----DIKAPECFTVERKLRERMKIPVFHD-  163 (764)
T ss_pred             HHHHHHHHhhccCCCccccccCC-CCHHHHHHHHHHHHh--hcCCceee-----eccCchHHHHHHHHHhcCCCCeecc-
Confidence            34566666665 48877677754 467899999988874  68887652     2222   233333322213333332 


Q ss_pred             cccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC---EEEEEeCCC--------
Q 024116          102 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHALT--------  170 (272)
Q Consensus       102 n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga---~V~v~~~~t--------  170 (272)
                               +..+---.+..|++..++-.+.+++.-++++.|+|-+ |.+++.+|...|.   .+++|+++-        
T Consensus       164 ---------D~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaA-g~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~  233 (764)
T PRK12861        164 ---------DQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAA-ALACLDLLVDLGLPVENIWVTDIEGVVYRGRTT  233 (764)
T ss_pred             ---------ccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHH-HHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcc
Confidence                     2222222345778899999999999999999999998 9999999999997   699998531        


Q ss_pred             ---------------CCHhhhcCCCcEEEEecCCCccccCCCcCC---CcEEEEeeeCCC
Q 024116          171 ---------------KNPEQITSEADIVIAAAGVANLVRGSWLKP---GAVVLDVGTCPV  212 (272)
Q Consensus       171 ---------------~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~---g~vviDig~~~~  212 (272)
                                     .+|.+.++.+|++|-..+ |+.+++||++.   .-+|+=++ ||.
T Consensus       234 ~l~~~k~~~a~~~~~~~L~eai~~advliG~S~-~g~ft~e~v~~Ma~~PIIFaLs-NPt  291 (764)
T PRK12861        234 LMDPDKERFAQETDARTLAEVIGGADVFLGLSA-GGVLKAEMLKAMAARPLILALA-NPT  291 (764)
T ss_pred             cCCHHHHHHHhhcCCCCHHHHHhcCCEEEEcCC-CCCCCHHHHHHhccCCEEEECC-CCC
Confidence                           367899999999997765 89999999854   66787776 554

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.54  E-value=0.00023  Score=65.71  Aligned_cols=73  Identities=27%  Similarity=0.402  Sum_probs=59.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------CCHhhhcCCCcEEEEecCCCc----c-ccCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------KNPEQITSEADIVIAAAGVAN----L-VRGS  196 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t---------------~~l~~~l~~ADIVIsa~g~p~----~-i~~~  196 (272)
                      .+|..||-|.+ |.|++..|.+.|..|++++|+.               .+..+..+.||+||+.++.+.    . +.++
T Consensus         1 ~kIafIGLG~M-G~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~   79 (286)
T COG2084           1 MKIAFIGLGIM-GSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGEN   79 (286)
T ss_pred             CeEEEEcCchh-hHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCcc
Confidence            37899999997 9999999999999999999984               244678999999999998654    1 2323


Q ss_pred             ----CcCCCcEEEEeeeC
Q 024116          197 ----WLKPGAVVLDVGTC  210 (272)
Q Consensus       197 ----~vk~g~vviDig~~  210 (272)
                          ..++|.++||+.+.
T Consensus        80 g~~~~~~~G~i~IDmSTi   97 (286)
T COG2084          80 GLLEGLKPGAIVIDMSTI   97 (286)
T ss_pred             chhhcCCCCCEEEECCCC
Confidence                34689999999865

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=97.50  E-value=0.00017  Score=67.76  Aligned_cols=79  Identities=16%  Similarity=0.310  Sum_probs=63.0

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------CHhhhcCCCcEEEEecCC-C---cccc
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITSEADIVIAAAGV-A---NLVR  194 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------~l~~~l~~ADIVIsa~g~-p---~~i~  194 (272)
                      .+++||+|.|+|.|.+ |+.+++.|..-|+.+.-+.|+..             ++.+.++++|+||.+.+- +   |++.
T Consensus       158 ~~~~gK~vgilG~G~I-G~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liN  236 (336)
T KOG0069|consen  158 YDLEGKTVGILGLGRI-GKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLIN  236 (336)
T ss_pred             ccccCCEEEEecCcHH-HHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhh
Confidence            5788999999999996 99999999998865555555432             678899999999988873 2   3566


Q ss_pred             CC---CcCCCcEEEEeeeCC
Q 024116          195 GS---WLKPGAVVLDVGTCP  211 (272)
Q Consensus       195 ~~---~vk~g~vviDig~~~  211 (272)
                      ++   +.|+|+++|+++--.
T Consensus       237 k~~~~~mk~g~vlVN~aRG~  256 (336)
T KOG0069|consen  237 KKFIEKMKDGAVLVNTARGA  256 (336)
T ss_pred             HHHHHhcCCCeEEEeccccc
Confidence            55   569999999998654

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.50  E-value=0.00026  Score=65.58  Aligned_cols=73  Identities=14%  Similarity=0.248  Sum_probs=59.2

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-CCHhhhcCCCcEEEEecCCCcc---c---cCCCcCCCcEEEEe
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-KNPEQITSEADIVIAAAGVANL---V---RGSWLKPGAVVLDV  207 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-~~l~~~l~~ADIVIsa~g~p~~---i---~~~~vk~g~vviDi  207 (272)
                      .+++|.|||.|.. |.+++..|...|.+|++.+|+. .++.+.+++||+||.+++....   +   .+..++++.+++|.
T Consensus         3 ~~m~I~iiG~G~~-G~~lA~~l~~~G~~V~~~~r~~~~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~~~ivi~~   81 (308)
T PRK14619          3 QPKTIAILGAGAW-GSTLAGLASANGHRVRVWSRRSGLSLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPPETIIVTA   81 (308)
T ss_pred             CCCEEEEECccHH-HHHHHHHHHHCCCEEEEEeCCCCCCHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCCCcEEEEe
Confidence            4678999999885 9999999999999999999864 5688889999999999986431   2   22235778899997


Q ss_pred             e
Q 024116          208 G  208 (272)
Q Consensus       208 g  208 (272)
                      .
T Consensus        82 s   82 (308)
T PRK14619         82 T   82 (308)
T ss_pred             C
Confidence            5

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.48  E-value=0.00022  Score=62.69  Aligned_cols=59  Identities=22%  Similarity=0.339  Sum_probs=48.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-CH-----------------hhhcCCCcEEEEecCCCc
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-NP-----------------EQITSEADIVIAAAGVAN  191 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-~l-----------------~~~l~~ADIVIsa~g~p~  191 (272)
                      ++++||+|+|||.|.+ |..-+..|++.||.|+|+..+.. .+                 .+.+..+|+||.||+.+.
T Consensus         5 l~l~gk~vlVvGgG~v-a~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~   81 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDV-ALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE   81 (205)
T ss_pred             EEcCCCeEEEECcCHH-HHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH
Confidence            5789999999999885 99999999999999999976531 11                 245788999999999763

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.44  E-value=0.0003  Score=67.20  Aligned_cols=75  Identities=17%  Similarity=0.270  Sum_probs=59.1

Q ss_pred             ccceEEEEc-CCcccHHHHHHHHHhCCCEEEEEeCCC-CCHhhhcCCCcEEEEecCCCc---cccC-CCcCCCcEEEEee
Q 024116          135 MGKNAVVIG-RSNIVGLPTSLLLQRHHATVSIVHALT-KNPEQITSEADIVIAAAGVAN---LVRG-SWLKPGAVVLDVG  208 (272)
Q Consensus       135 ~gk~v~ViG-~g~~vG~~la~~L~~~ga~V~v~~~~t-~~l~~~l~~ADIVIsa~g~p~---~i~~-~~vk~g~vviDig  208 (272)
                      ..++++||| .|. +|..++..|.+.|..|+++++.. .+..+.+++||+||.+++...   .+.. ..+++|++|+|+|
T Consensus        97 ~~~~I~IiGG~Gl-mG~slA~~l~~~G~~V~~~d~~~~~~~~~~~~~aDlVilavP~~~~~~~~~~l~~l~~~~iv~Dv~  175 (374)
T PRK11199         97 DLRPVVIVGGKGQ-LGRLFAKMLTLSGYQVRILEQDDWDRAEDILADAGMVIVSVPIHLTEEVIARLPPLPEDCILVDLT  175 (374)
T ss_pred             ccceEEEEcCCCh-hhHHHHHHHHHCCCeEEEeCCCcchhHHHHHhcCCEEEEeCcHHHHHHHHHHHhCCCCCcEEEECC
Confidence            348899999 666 49999999999999999998754 356778899999999998432   2211 1178899999998


Q ss_pred             eC
Q 024116          209 TC  210 (272)
Q Consensus       209 ~~  210 (272)
                      ..
T Consensus       176 Sv  177 (374)
T PRK11199        176 SV  177 (374)
T ss_pred             Cc
Confidence            74

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.40  E-value=0.00043  Score=64.74  Aligned_cols=75  Identities=11%  Similarity=0.185  Sum_probs=60.5

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCC--CEEEEEeCCC--------------------CCHhhhcCCCcEEEEecCCCc-
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALT--------------------KNPEQITSEADIVIAAAGVAN-  191 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~g--a~V~v~~~~t--------------------~~l~~~l~~ADIVIsa~g~p~-  191 (272)
                      .-+++.|+|.|.- ++.-+..+..--  .+|.+.+|+.                    .+.++.+++||||+++|++.. 
T Consensus       127 d~~~l~iiG~G~q-A~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~P  205 (315)
T PRK06823        127 HVSAIGIVGTGIQ-ARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSREP  205 (315)
T ss_pred             CCCEEEEECCcHH-HHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCCc
Confidence            5689999999885 888777766432  4899988763                    346788999999999999665 


Q ss_pred             cccCCCcCCCcEEEEeeeC
Q 024116          192 LVRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       192 ~i~~~~vk~g~vviDig~~  210 (272)
                      +++.+|+++|+.|.=+|.+
T Consensus       206 ~~~~~~l~~G~hi~~iGs~  224 (315)
T PRK06823        206 LLQAEDIQPGTHITAVGAD  224 (315)
T ss_pred             eeCHHHcCCCcEEEecCCC
Confidence            5799999999999999865

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.40  E-value=0.00037  Score=65.30  Aligned_cols=75  Identities=17%  Similarity=0.298  Sum_probs=59.5

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhC--CCEEEEEeCCC--------------------CCHhhhcCCCcEEEEecCCCc-
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALT--------------------KNPEQITSEADIVIAAAGVAN-  191 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~--ga~V~v~~~~t--------------------~~l~~~l~~ADIVIsa~g~p~-  191 (272)
                      .-+++.|||.|.. |+.-+..|...  ..+|.+++++.                    .+.++.+++|||||++|++.. 
T Consensus       127 ~~~~lgiiG~G~q-A~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~P  205 (325)
T TIGR02371       127 DSSVLGIIGAGRQ-AWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRKP  205 (325)
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCCc
Confidence            4689999999986 99866655432  35899988762                    345688899999999998655 


Q ss_pred             cccCCCcCCCcEEEEeeeC
Q 024116          192 LVRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       192 ~i~~~~vk~g~vviDig~~  210 (272)
                      +++.+|+++|+.|.-+|.+
T Consensus       206 ~~~~~~l~~g~~v~~vGs~  224 (325)
T TIGR02371       206 VVKADWVSEGTHINAIGAD  224 (325)
T ss_pred             EecHHHcCCCCEEEecCCC
Confidence            4789999999999999965

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.36  E-value=0.00032  Score=58.75  Aligned_cols=69  Identities=26%  Similarity=0.400  Sum_probs=51.0

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC----------------------------CCCHhhhcCCCcEEEEecCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------------TKNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~----------------------------t~~l~~~l~~ADIVIsa~g~  189 (272)
                      ||+|+|+|.. |.++|..|..+|.+|++..++                            +.++++.+++||+||.+++.
T Consensus         1 KI~ViGaG~~-G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs   79 (157)
T PF01210_consen    1 KIAVIGAGNW-GTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS   79 (157)
T ss_dssp             EEEEESSSHH-HHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G
T ss_pred             CEEEECcCHH-HHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH
Confidence            6899999986 999999999999999999765                            24778999999999999986


Q ss_pred             Cc---ccc--CCCcCCCcEEEEe
Q 024116          190 AN---LVR--GSWLKPGAVVLDV  207 (272)
Q Consensus       190 p~---~i~--~~~vk~g~vviDi  207 (272)
                      -.   +++  ..+++++..++-+
T Consensus        80 ~~~~~~~~~l~~~l~~~~~ii~~  102 (157)
T PF01210_consen   80 QAHREVLEQLAPYLKKGQIIISA  102 (157)
T ss_dssp             GGHHHHHHHHTTTSHTT-EEEET
T ss_pred             HHHHHHHHHHhhccCCCCEEEEe
Confidence            43   221  2345677766654

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.34  E-value=0.0005  Score=63.84  Aligned_cols=76  Identities=13%  Similarity=0.071  Sum_probs=61.5

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhC-C-CEEEEEeCCC---------------------CCHhhhcCCCcEEEEecCCCc
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRH-H-ATVSIVHALT---------------------KNPEQITSEADIVIAAAGVAN  191 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~-g-a~V~v~~~~t---------------------~~l~~~l~~ADIVIsa~g~p~  191 (272)
                      .-+++.|||+|.- |+.-+..+... . .+|.+.+|+.                     .+.++.+++||||+++|++..
T Consensus       116 da~~l~iiGaG~Q-A~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~  194 (301)
T PRK06407        116 NVENFTIIGSGFQ-AETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT  194 (301)
T ss_pred             CCcEEEEECCcHH-HHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC
Confidence            5689999999886 99877777653 3 3799988762                     346788999999999999765


Q ss_pred             -cccCCCcCCCcEEEEeeeCC
Q 024116          192 -LVRGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       192 -~i~~~~vk~g~vviDig~~~  211 (272)
                       +++.+|++||+.|.=+|.+.
T Consensus       195 P~~~~~~l~pg~hV~aiGs~~  215 (301)
T PRK06407        195 PIFNRKYLGDEYHVNLAGSNY  215 (301)
T ss_pred             cEecHHHcCCCceEEecCCCC
Confidence             47999999999999998654

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=97.33  E-value=0.00031  Score=65.84  Aligned_cols=71  Identities=17%  Similarity=0.182  Sum_probs=55.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEEEEecCCCc---cccC-
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVAN---LVRG-  195 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIVIsa~g~p~---~i~~-  195 (272)
                      .|+||+|.|||.|.+ |+++|..|...|.+|++.++..             .++.+.+++||+|+..++.+.   ++.. 
T Consensus        13 ~LkgKtVGIIG~GsI-G~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd~~t~~V~~~e   91 (335)
T PRK13403         13 LLQGKTVAVIGYGSQ-GHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPDEQQAHVYKAE   91 (335)
T ss_pred             hhCcCEEEEEeEcHH-HHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCChHHHHHHHHH
Confidence            468999999999886 9999999999999999986642             157789999999998887532   3432 


Q ss_pred             --CCcCCCcEE
Q 024116          196 --SWLKPGAVV  204 (272)
Q Consensus       196 --~~vk~g~vv  204 (272)
                        ..+++|+++
T Consensus        92 il~~MK~GaiL  102 (335)
T PRK13403         92 VEENLREGQML  102 (335)
T ss_pred             HHhcCCCCCEE
Confidence              345777643

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=97.28  E-value=0.00045  Score=58.62  Aligned_cols=76  Identities=25%  Similarity=0.284  Sum_probs=50.8

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCC---CccccC-
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGV---ANLVRG-  195 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~---p~~i~~-  195 (272)
                      |+||+|.|||+|.- |++-+..|...|.+|++..|..              .+..|.++.||+|+..++-   +..... 
T Consensus         2 l~~k~IAViGyGsQ-G~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD~~q~~vy~~~   80 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQ-GHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPDEVQPEVYEEE   80 (165)
T ss_dssp             HCTSEEEEES-SHH-HHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-HHHHHHHHHHH
T ss_pred             cCCCEEEEECCChH-HHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCChHHHHHHHHHH
Confidence            58999999999986 9999999999999999998874              2567899999999999873   222211 


Q ss_pred             --CCcCCCcE-EEEeeeC
Q 024116          196 --SWLKPGAV-VLDVGTC  210 (272)
Q Consensus       196 --~~vk~g~v-viDig~~  210 (272)
                        ..+++|.+ ++-=|+|
T Consensus        81 I~p~l~~G~~L~fahGfn   98 (165)
T PF07991_consen   81 IAPNLKPGATLVFAHGFN   98 (165)
T ss_dssp             HHHHS-TT-EEEESSSHH
T ss_pred             HHhhCCCCCEEEeCCcch
Confidence              14677753 3333444

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=97.27  E-value=0.0092  Score=55.77  Aligned_cols=148  Identities=16%  Similarity=0.134  Sum_probs=98.5

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEEcCCC-CCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCccc
Q 024116           21 DSQTYVRNKIKACEEVGIKSIVTEFADG-CTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFH   99 (272)
Q Consensus        21 ~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~-~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~~   99 (272)
                      .|..=--+=..++.++|..+.++.-... ...+.+.+..+-|+.  .+|+|.+-.|--  -....+.++       ..+-
T Consensus        53 pSTRTR~SFe~A~~~LGg~~i~l~~~~~~~~~~~~~dt~~vls~--~~D~iv~R~~~~--~~~~~~a~~-------~~vP  121 (311)
T PRK14804         53 TSTRTRVSFEVAMTEMGGHGIYLDWMASNFQLSDIDLEARYLSR--NVSVIMARLKKH--EDLLVMKNG-------SQVP  121 (311)
T ss_pred             CchhHHHHHHHHHHHcCCeEEEeCCCccccccccHHHHHHHHHh--cCCEEEEeCCCh--HHHHHHHHH-------CCCC
Confidence            3444444567889999999988864321 122333344566665  589999886632  222222221       1233


Q ss_pred             cccccccccCCCCCccccCCHHH-HHHHHHHhCC-CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------
Q 024116          100 PLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGV-EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------  170 (272)
Q Consensus       100 ~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~-~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------  170 (272)
                      .+|.|       ...+.||=+.+ ++.+.++.+. +++|++|+++|.++-|.+.++..+...|++|++++-..       
T Consensus       122 VINag-------~~~~HPtQaL~Dl~Ti~e~~g~~~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~  194 (311)
T PRK14804        122 VINGC-------DNMFHPCQSLADIMTIALDSPEIPLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHA  194 (311)
T ss_pred             EEECC-------CCCCChHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHH
Confidence            45542       12367998888 5555555554 69999999999987889999999999999999987421       


Q ss_pred             ---------------CCHhhhcCCCcEEEEe
Q 024116          171 ---------------KNPEQITSEADIVIAA  186 (272)
Q Consensus       171 ---------------~~l~~~l~~ADIVIsa  186 (272)
                                     .++++.++.||+|.+-
T Consensus       195 ~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d  225 (311)
T PRK14804        195 QTVERAKKKGTLSWEMNLHKAVSHADYVYTD  225 (311)
T ss_pred             HHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence                           4567888999999873

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.26  E-value=0.00026  Score=53.71  Aligned_cols=70  Identities=29%  Similarity=0.340  Sum_probs=52.0

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC---CEEEEE-eCCC---------------C-CHhhhcCCCcEEEEecCCCcc--ccC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHH---ATVSIV-HALT---------------K-NPEQITSEADIVIAAAGVANL--VRG  195 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~g---a~V~v~-~~~t---------------~-~l~~~l~~ADIVIsa~g~p~~--i~~  195 (272)
                      |+.+||.|.+ |.+++..|.+.|   .+|+++ +|+.               . +..+.+++||+||.++....+  +-.
T Consensus         1 kI~iIG~G~m-g~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~   79 (96)
T PF03807_consen    1 KIGIIGAGNM-GSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVLS   79 (96)
T ss_dssp             EEEEESTSHH-HHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHH
T ss_pred             CEEEECCCHH-HHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHHH
Confidence            6889999996 999999999999   899965 6653               1 456788899999999975442  211


Q ss_pred             --CCcCCCcEEEEee
Q 024116          196 --SWLKPGAVVLDVG  208 (272)
Q Consensus       196 --~~vk~g~vviDig  208 (272)
                        ....++.++||+.
T Consensus        80 ~i~~~~~~~~vis~~   94 (96)
T PF03807_consen   80 EIPHLLKGKLVISIA   94 (96)
T ss_dssp             HHHHHHTTSEEEEES
T ss_pred             HHhhccCCCEEEEeC
Confidence              2456788888874

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.25  E-value=0.0007  Score=64.96  Aligned_cols=111  Identities=23%  Similarity=0.228  Sum_probs=77.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC------------------------CCHhhhcCCCcEEEEecCCCc
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT------------------------KNPEQITSEADIVIAAAGVAN  191 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t------------------------~~l~~~l~~ADIVIsa~g~p~  191 (272)
                      ++|+|||+|+ ||+++++.|++++ .+|++..|+.                        +.+.+.+++.|+||++.+.+.
T Consensus         2 ~~ilviGaG~-Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~   80 (389)
T COG1748           2 MKILVIGAGG-VGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV   80 (389)
T ss_pred             CcEEEECCch-hHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh
Confidence            6899999988 5999999999999 7999999872                        245688999999999998654


Q ss_pred             c--ccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEeccCCC-cccHHHHHHHHHHHHHH
Q 024116          192 L--VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPG-GVGPMTVAMLLSNTLDS  264 (272)
Q Consensus       192 ~--i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpG-GvGp~T~amL~~n~v~a  264 (272)
                      -  +=+..++.|.-++|+.+....          .     -+++..+++++ +|-++| |+-|=-+..+...+++-
T Consensus        81 ~~~i~ka~i~~gv~yvDts~~~~~----------~-----~~~~~~a~~Ag-it~v~~~G~dPGi~nv~a~~a~~~  140 (389)
T COG1748          81 DLTILKACIKTGVDYVDTSYYEEP----------P-----WKLDEEAKKAG-ITAVLGCGFDPGITNVLAAYAAKE  140 (389)
T ss_pred             hHHHHHHHHHhCCCEEEcccCCch----------h-----hhhhHHHHHcC-eEEEcccCcCcchHHHHHHHHHHH
Confidence            2  333456778889999877532          1     11233355666 233442 55555555666555443

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.23  E-value=0.00088  Score=63.48  Aligned_cols=76  Identities=13%  Similarity=0.195  Sum_probs=59.0

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhC-C-CEEEEEeCCC--------------------CCHhhhcCCCcEEEEecCCC--
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRH-H-ATVSIVHALT--------------------KNPEQITSEADIVIAAAGVA--  190 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~-g-a~V~v~~~~t--------------------~~l~~~l~~ADIVIsa~g~p--  190 (272)
                      .-+++.|||+|.- ++.-+..+... . -+|++.+|+.                    .+.++.+++||||+++|+++  
T Consensus       128 da~~l~iiGaG~Q-A~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~~  206 (346)
T PRK07589        128 DSRTMALIGNGAQ-SEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKTN  206 (346)
T ss_pred             CCcEEEEECCcHH-HHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCC
Confidence            4588999999885 87776655433 3 4799988762                    35678899999999999854  


Q ss_pred             -ccccCCCcCCCcEEEEeeeCC
Q 024116          191 -NLVRGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       191 -~~i~~~~vk~g~vviDig~~~  211 (272)
                       .+++.+|+++|+.|.=+|.+.
T Consensus       207 ~Pvl~~~~lkpG~hV~aIGs~~  228 (346)
T PRK07589        207 ATILTDDMVEPGMHINAVGGDC  228 (346)
T ss_pred             CceecHHHcCCCcEEEecCCCC
Confidence             358999999999999888653

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.21  E-value=0.00064  Score=62.21  Aligned_cols=72  Identities=19%  Similarity=0.309  Sum_probs=56.2

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCc----c-ccC---
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----L-VRG---  195 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~----~-i~~---  195 (272)
                      +|.|||.|.+ |.+++..|++.|.+|++++++.              .+..+.+++||+||.+++.+.    . +..   
T Consensus         1 ~IgvIG~G~m-G~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~   79 (291)
T TIGR01505         1 KVGFIGLGIM-GSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGI   79 (291)
T ss_pred             CEEEEEecHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchH
Confidence            4789999886 9999999999999999998773              355678899999999998532    1 121   


Q ss_pred             -CCcCCCcEEEEeeeC
Q 024116          196 -SWLKPGAVVLDVGTC  210 (272)
Q Consensus       196 -~~vk~g~vviDig~~  210 (272)
                       ..++++.+++|.+..
T Consensus        80 ~~~~~~g~iivd~st~   95 (291)
T TIGR01505        80 IEGAKPGKTLVDMSSI   95 (291)
T ss_pred             hhcCCCCCEEEECCCC
Confidence             245788999997643

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PLN02712 arogenate dehydrogenase

Probab=97.20  E-value=0.00074  Score=69.15  Aligned_cols=80  Identities=11%  Similarity=0.171  Sum_probs=60.8

Q ss_pred             hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------CHhhhcC-CCcEEEEecCCCc---c
Q 024116          130 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITS-EADIVIAAAGVAN---L  192 (272)
Q Consensus       130 ~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------~l~~~l~-~ADIVIsa~g~p~---~  192 (272)
                      .+.++++++|.|||.|.+ |..++..|.+.|.+|++++++..             ++.+.+. .+|+||.+++...   +
T Consensus       363 ~~~~~~~~kIgIIGlG~m-G~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~v  441 (667)
T PLN02712        363 CVNDGSKLKIAIVGFGNF-GQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEKV  441 (667)
T ss_pred             ccCCCCCCEEEEEecCHH-HHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHHH
Confidence            445678999999999885 99999999999999999987632             3334454 5899999998432   2


Q ss_pred             cc---CCCcCCCcEEEEeeeC
Q 024116          193 VR---GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       193 i~---~~~vk~g~vviDig~~  210 (272)
                      +.   ...++++++|+|++..
T Consensus       442 i~~l~~~~lk~g~ivvDv~Sv  462 (667)
T PLN02712        442 LKSLPFQRLKRSTLFVDVLSV  462 (667)
T ss_pred             HHHHHHhcCCCCcEEEECCCc
Confidence            22   2346889999999754

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=97.19  E-value=0.00092  Score=61.53  Aligned_cols=73  Identities=26%  Similarity=0.347  Sum_probs=57.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------CH-hhhcCCCcEEEEecCCCc---cc
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------NP-EQITSEADIVIAAAGVAN---LV  193 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~------------------~l-~~~l~~ADIVIsa~g~p~---~i  193 (272)
                      -++|+|+|.|.+ |+.++..|.++|..|.++.+...                  +. .+....||+||.+++...   ++
T Consensus         3 ~~~v~IvG~Gli-G~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~~~l   81 (279)
T COG0287           3 SMKVGIVGLGLM-GGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEEVL   81 (279)
T ss_pred             CcEEEEECCchH-HHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHHHHH
Confidence            368999999886 99999999999999988876531                  22 566788999999998543   22


Q ss_pred             ---cCCCcCCCcEEEEeeeC
Q 024116          194 ---RGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       194 ---~~~~vk~g~vviDig~~  210 (272)
                         .+ .+++|++|.|++..
T Consensus        82 ~~l~~-~l~~g~iv~Dv~S~  100 (279)
T COG0287          82 KELAP-HLKKGAIVTDVGSV  100 (279)
T ss_pred             HHhcc-cCCCCCEEEecccc
Confidence               22 68999999999965

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=97.18  E-value=0.00072  Score=62.16  Aligned_cols=92  Identities=13%  Similarity=0.270  Sum_probs=74.3

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhC----CC-------EEEEEeCCC-----------------
Q 024116          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----HA-------TVSIVHALT-----------------  170 (272)
Q Consensus       119 Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~----ga-------~V~v~~~~t-----------------  170 (272)
                      +..|++..++-.+.+++.-+++++|+|.+ |..++.+|...    |.       .+++++++-                 
T Consensus         8 ~lAgllnAlk~~g~~l~d~~iv~~GAGsA-g~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a   86 (279)
T cd05312           8 ALAGLLAALRITGKPLSDQRILFLGAGSA-GIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFA   86 (279)
T ss_pred             HHHHHHHHHHHhCCChhhcEEEEECcCHH-HHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHH
Confidence            44678899999999999999999999998 99999888765    76       788887651                 


Q ss_pred             --------CCHhhhcC--CCcEEEEecCCCccccCCCcC------CCcEEEEeeeCCC
Q 024116          171 --------KNPEQITS--EADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  212 (272)
Q Consensus       171 --------~~l~~~l~--~ADIVIsa~g~p~~i~~~~vk------~g~vviDig~~~~  212 (272)
                              .+|.+.++  ++|++|-.++.|+.+++++++      +.-+|+=+. ||.
T Consensus        87 ~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  143 (279)
T cd05312          87 RKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALS-NPT  143 (279)
T ss_pred             hhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECC-CcC
Confidence                    25778888  889999988888899988874      356777666 443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK06046 alanine dehydrogenase; Validated

Probab=97.17  E-value=0.00098  Score=62.45  Aligned_cols=74  Identities=20%  Similarity=0.345  Sum_probs=58.5

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHh-CCC-EEEEEeCCC---------------------CCHhhhcCCCcEEEEecCCCc
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQR-HHA-TVSIVHALT---------------------KNPEQITSEADIVIAAAGVAN  191 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~-~ga-~V~v~~~~t---------------------~~l~~~l~~ADIVIsa~g~p~  191 (272)
                      .-+++.|||.|.. |+..+..|.. .+. .|.+++++.                     .+.++.++ +|+|+++|+...
T Consensus       128 ~~~~vgiiG~G~q-a~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~  205 (326)
T PRK06046        128 DSKVVGIIGAGNQ-ARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK  205 (326)
T ss_pred             CCCEEEEECCcHH-HHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC
Confidence            4679999999996 9988888774 344 788888753                     23456665 999999999654


Q ss_pred             -cccCCCcCCCcEEEEeeeC
Q 024116          192 -LVRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       192 -~i~~~~vk~g~vviDig~~  210 (272)
                       +++.+|+++|+.|.-+|.+
T Consensus       206 P~~~~~~l~~g~hV~~iGs~  225 (326)
T PRK06046        206 PVVKAEWIKEGTHINAIGAD  225 (326)
T ss_pred             cEecHHHcCCCCEEEecCCC
Confidence             5899999999999999965

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=97.14  E-value=0.00059  Score=60.28  Aligned_cols=116  Identities=21%  Similarity=0.287  Sum_probs=72.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-C-----------------CHhhhcCCCcEEEEecCCCcc-
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-K-----------------NPEQITSEADIVIAAAGVANL-  192 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-~-----------------~l~~~l~~ADIVIsa~g~p~~-  192 (272)
                      ++++||+|+|||.|.. |.-=+..|++.||+|+|..... +                 -..+.+..+++||.||+.+.+ 
T Consensus         8 ~~l~~k~VlvvGgG~v-a~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~ln   86 (210)
T COG1648           8 LDLEGKKVLVVGGGSV-ALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEELN   86 (210)
T ss_pred             EEcCCCEEEEECCCHH-HHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhhcCceEEEEeCCCHHHH
Confidence            5789999999999884 9889999999999999986543 1                 113456669999999997653 


Q ss_pred             --ccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhh---ceEeccCCCcccHHHHHHHHHHHHHHH
Q 024116          193 --VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRL---ASVITPVPGGVGPMTVAMLLSNTLDSA  265 (272)
Q Consensus       193 --i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~---~~~~tpvpGGvGp~T~amL~~n~v~a~  265 (272)
                        +-.. -++-.+.+++.-.|..              +|+-|.+.-++   .-.++  -||-+|+.+.|+.+......
T Consensus        87 ~~i~~~-a~~~~i~vNv~D~p~~--------------~~f~~Pa~~~r~~l~iaIs--T~G~sP~la~~ir~~Ie~~l  147 (210)
T COG1648          87 ERIAKA-ARERRILVNVVDDPEL--------------CDFIFPAIVDRGPLQIAIS--TGGKSPVLARLLREKIEALL  147 (210)
T ss_pred             HHHHHH-HHHhCCceeccCCccc--------------CceecceeeccCCeEEEEE--CCCCChHHHHHHHHHHHHHc
Confidence              2111 1122234444433321              22222221111   22222  48899999999887765443

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.13  E-value=0.001  Score=60.83  Aligned_cols=74  Identities=19%  Similarity=0.287  Sum_probs=57.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCc----cc-cC--
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LV-RG--  195 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~----~i-~~--  195 (272)
                      ++|.|||.|.+ |.+++..|.+.|.+|++++++.              .+..+.++++|+||.+++.+.    .+ ..  
T Consensus         3 ~~IgviG~G~m-G~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~   81 (296)
T PRK11559          3 MKVGFIGLGIM-GKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENG   81 (296)
T ss_pred             ceEEEEccCHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcch
Confidence            47999999886 9999999999999999998763              345677899999999998432    22 11  


Q ss_pred             --CCcCCCcEEEEeeeCC
Q 024116          196 --SWLKPGAVVLDVGTCP  211 (272)
Q Consensus       196 --~~vk~g~vviDig~~~  211 (272)
                        ..++++.+++|++...
T Consensus        82 ~~~~~~~g~iiid~st~~   99 (296)
T PRK11559         82 IIEGAKPGTVVIDMSSIA   99 (296)
T ss_pred             HhhcCCCCcEEEECCCCC
Confidence              2457899999987553

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=97.12  E-value=0.0097  Score=56.22  Aligned_cols=148  Identities=11%  Similarity=0.007  Sum_probs=99.6

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEEcCCC--CCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCcc
Q 024116           21 DSQTYVRNKIKACEEVGIKSIVTEFADG--CTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF   98 (272)
Q Consensus        21 ~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~--~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~   98 (272)
                      .|..=--+=..++.++|..+.+..-...  ...+.+.+.++-|+.-  +|+|.+.-|  .+-...++-+..       .+
T Consensus        55 pSTRTR~SFe~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y--~D~Iv~R~~--~~~~~~~~a~~~-------~v  123 (336)
T PRK03515         55 DSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRM--YDGIQYRGY--GQEIVETLAEYA-------GV  123 (336)
T ss_pred             CChhHHHHHHHHHHHcCCcEEEeCCccccCCCCCCHHHHHHHHHHh--CcEEEEEeC--ChHHHHHHHHhC-------CC
Confidence            3444444566788999999988532110  1235677788877764  789999866  322223332222       13


Q ss_pred             ccccccccccCCCCCccccCCHHH-HHHHHHHhCC-CCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC------
Q 024116           99 HPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGV-EIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL------  169 (272)
Q Consensus        99 ~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~-~l~gk~v~ViG~g-~~vG~~la~~L~~~ga~V~v~~~~------  169 (272)
                      -.+|.     +  .+...||=+.+ ++.+.++.+. +++|++++.+|-+ ..|.+.++.++...|+++++|+-.      
T Consensus       124 PVINa-----~--~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~  196 (336)
T PRK03515        124 PVWNG-----L--TNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEA  196 (336)
T ss_pred             CEEEC-----C--CCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcH
Confidence            34453     1  23467998888 5555555553 7999999999975 347999999999999999998632      


Q ss_pred             -------------------CCCHhhhcCCCcEEEEe
Q 024116          170 -------------------TKNPEQITSEADIVIAA  186 (272)
Q Consensus       170 -------------------t~~l~~~l~~ADIVIsa  186 (272)
                                         +.++++.+++||+|.+-
T Consensus       197 ~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd  232 (336)
T PRK03515        197 ALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD  232 (336)
T ss_pred             HHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence                               14567889999999975

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=97.11  E-value=0.00068  Score=61.48  Aligned_cols=92  Identities=14%  Similarity=0.182  Sum_probs=74.0

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-----------EEEEEeCCC-----------------
Q 024116          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-----------TVSIVHALT-----------------  170 (272)
Q Consensus       119 Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-----------~V~v~~~~t-----------------  170 (272)
                      |..|++..++-.+.+++.-+++++|+|-+ |..++.+|...+.           .+++++++-                 
T Consensus         8 ~lAgllnAlk~~g~~l~d~riv~~GAGsA-g~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~   86 (254)
T cd00762           8 AVAGLLAALKVTKKKISEHKVLFNGAGAA-ALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLA   86 (254)
T ss_pred             HHHHHHHHHHHhCCChhhcEEEEECcCHH-HHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHH
Confidence            44678889999999999999999999998 9999998877653           588887651                 


Q ss_pred             ---------CCHhhhcC--CCcEEEEecCCCccccCCCcC------CCcEEEEeeeCCC
Q 024116          171 ---------KNPEQITS--EADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  212 (272)
Q Consensus       171 ---------~~l~~~l~--~ADIVIsa~g~p~~i~~~~vk------~g~vviDig~~~~  212 (272)
                               .+|.+.++  ++|++|-..+.|+.+++|+++      +.-+|+=+. ||.
T Consensus        87 ~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  144 (254)
T cd00762          87 RFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALS-NPT  144 (254)
T ss_pred             HHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECC-CcC
Confidence                     25778888  999999999989999999874      345777665 443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PLN02256 arogenate dehydrogenase

Probab=97.10  E-value=0.002  Score=59.91  Aligned_cols=77  Identities=17%  Similarity=0.250  Sum_probs=58.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhc-CCCcEEEEecCCCc---ccc
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQIT-SEADIVIAAAGVAN---LVR  194 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l-~~ADIVIsa~g~p~---~i~  194 (272)
                      -+-+++++.|||.|.+ |..++..|.+.|.+|++++++.             .++.+.+ .++|+||.+++...   ++.
T Consensus        32 ~~~~~~kI~IIG~G~m-G~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~  110 (304)
T PLN02256         32 EKSRKLKIGIVGFGNF-GQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLR  110 (304)
T ss_pred             ccCCCCEEEEEeeCHH-HHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHH
Confidence            3457889999999886 9999999999998999887664             1334444 46999999998432   232


Q ss_pred             ---CCCcCCCcEEEEeee
Q 024116          195 ---GSWLKPGAVVLDVGT  209 (272)
Q Consensus       195 ---~~~vk~g~vviDig~  209 (272)
                         ...++++++|+|++.
T Consensus       111 ~l~~~~l~~~~iviDv~S  128 (304)
T PLN02256        111 SLPLQRLKRSTLFVDVLS  128 (304)
T ss_pred             hhhhhccCCCCEEEecCC
Confidence               234678999999997

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=97.09  E-value=0.00089  Score=59.03  Aligned_cols=73  Identities=26%  Similarity=0.347  Sum_probs=57.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------CHhhhcCCCcEEEEecCCCcc---cc--
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------NPEQITSEADIVIAAAGVANL---VR--  194 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-----------------~l~~~l~~ADIVIsa~g~p~~---i~--  194 (272)
                      +++.|+|+|.+ |.+++..|...|.+|++.+|+.+                 +.++..+.||+||-|++.+..   +.  
T Consensus         2 ~~~~i~GtGni-G~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l   80 (211)
T COG2085           2 MIIAIIGTGNI-GSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAEL   80 (211)
T ss_pred             cEEEEeccChH-HHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHHH
Confidence            57899999996 99999999999999999987753                 345788999999999996543   21  


Q ss_pred             CCCcCCCcEEEEeeeCCC
Q 024116          195 GSWLKPGAVVLDVGTCPV  212 (272)
Q Consensus       195 ~~~vk~g~vviDig~~~~  212 (272)
                      .+++. |.+|||+. ||.
T Consensus        81 ~~~~~-~KIvID~t-np~   96 (211)
T COG2085          81 RDALG-GKIVIDAT-NPI   96 (211)
T ss_pred             HHHhC-CeEEEecC-CCc
Confidence            22333 79999986 553

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.09  E-value=0.0015  Score=63.96  Aligned_cols=132  Identities=20%  Similarity=0.181  Sum_probs=74.6

Q ss_pred             HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----CHhhhcCCCcEEEEecCC-CccccCCCcCCC
Q 024116          127 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----NPEQITSEADIVIAAAGV-ANLVRGSWLKPG  201 (272)
Q Consensus       127 l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~----~l~~~l~~ADIVIsa~g~-p~~i~~~~vk~g  201 (272)
                      |...+.++++++|+|+|.|.+ |..+|..|.++|++|+++++...    .+.+.+++..+-+- .|. +.    ......
T Consensus         7 ~~~~~~~~~~~~v~viG~G~~-G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~-~~~~~~----~~~~~D   80 (480)
T PRK01438          7 LTSWHSDWQGLRVVVAGLGVS-GFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVR-LGPGPT----LPEDTD   80 (480)
T ss_pred             hhhcccCcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEE-ECCCcc----ccCCCC
Confidence            456677889999999999996 99999999999999999986542    12233333333221 111 10    011223


Q ss_pred             cEEEEeeeCCCCCCCCCCCCCCceEecccchh-hhhh---hceEeccCCCcccHHHHHHHHHHHHHHH
Q 024116          202 AVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYE-EAMR---LASVITPVPGGVGPMTVAMLLSNTLDSA  265 (272)
Q Consensus       202 ~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~-~~~~---~~~~~tpvpGGvGp~T~amL~~n~v~a~  265 (272)
                      .+|+-.|++|...........+-.+.++.++- ...+   +...| -|-|-.|.=|+.-|+.++++..
T Consensus        81 ~Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I-~VTGTnGKTTTt~mi~~iL~~~  147 (480)
T PRK01438         81 LVVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWL-AVTGTNGKTTTVQMLASMLRAA  147 (480)
T ss_pred             EEEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEE-EEeCCCcHHHHHHHHHHHHHHc
Confidence            44555555443200000000122456666642 1111   11112 3558889999999999988754

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=97.09  E-value=0.018  Score=54.40  Aligned_cols=146  Identities=13%  Similarity=0.065  Sum_probs=98.8

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEEcCCCC----CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccC
Q 024116           21 DSQTYVRNKIKACEEVGIKSIVTEFADGC----TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVD   96 (272)
Q Consensus        21 ~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~----~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvd   96 (272)
                      .|..=--+=..++.++|.++.++.  ...    ..+.+.+.++-|+.-  +|+|.+.-|-.  -...++.+..       
T Consensus        56 pSTRTR~SFe~A~~~LGg~~i~l~--~~~ss~~kgEsl~DTarvls~y--~D~iv~R~~~~--~~~~~~a~~~-------  122 (334)
T PRK01713         56 TSTRTRCAFEVAAYDQGAQVTYID--PNSSQIGHKESMKDTARVLGRM--YDAIEYRGFKQ--SIVNELAEYA-------  122 (334)
T ss_pred             CCchHHHHHHHHHHHcCCeEEEcC--CccccCCCCcCHHHHHHHHHHh--CCEEEEEcCch--HHHHHHHHhC-------
Confidence            343333455678899999988753  221    235677777777764  88999876522  1222222221       


Q ss_pred             ccccccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC-----
Q 024116           97 GFHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL-----  169 (272)
Q Consensus        97 g~~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~g-~~vG~~la~~L~~~ga~V~v~~~~-----  169 (272)
                      .+-.+|.+       .+...||=+.+ ++.+.++.+.+++|++++++|-+ ..|.+.++..+...|++|++|.-.     
T Consensus       123 ~vPVINa~-------~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~  195 (334)
T PRK01713        123 GVPVFNGL-------TDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPE  195 (334)
T ss_pred             CCCEEECC-------CCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCC
Confidence            13444541       23467998888 56666666657999999999986 447999999999999999998633     


Q ss_pred             --------------------CCCHhhhcCCCcEEEEe
Q 024116          170 --------------------TKNPEQITSEADIVIAA  186 (272)
Q Consensus       170 --------------------t~~l~~~l~~ADIVIsa  186 (272)
                                          +.++.+.+++||+|.+-
T Consensus       196 ~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~  232 (334)
T PRK01713        196 ASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD  232 (334)
T ss_pred             HHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence                                14567889999999974

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.09  E-value=0.00091  Score=61.67  Aligned_cols=74  Identities=20%  Similarity=0.291  Sum_probs=58.0

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCc----ccc-CC-
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LVR-GS-  196 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~----~i~-~~-  196 (272)
                      ++|.|||.|.+ |.+++..|++.|.+|++++++.              .+..+.++++|+||.+++.+.    .+. .+ 
T Consensus         2 ~~Ig~IGlG~m-G~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~   80 (296)
T PRK15461          2 AAIAFIGLGQM-GSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENG   80 (296)
T ss_pred             CeEEEEeeCHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCccc
Confidence            37999999886 9999999999999999998863              345677899999999998653    222 11 


Q ss_pred             ---CcCCCcEEEEeeeCC
Q 024116          197 ---WLKPGAVVLDVGTCP  211 (272)
Q Consensus       197 ---~vk~g~vviDig~~~  211 (272)
                         .+++|.++||.+...
T Consensus        81 i~~~l~~g~lvid~sT~~   98 (296)
T PRK15461         81 VCEGLSRDALVIDMSTIH   98 (296)
T ss_pred             HhhcCCCCCEEEECCCCC
Confidence               257789999988654

>PRK13529 malate dehydrogenase; Provisional

Probab=97.07  E-value=0.0027  Score=63.36  Aligned_cols=93  Identities=13%  Similarity=0.201  Sum_probs=74.6

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHh----CCC-------EEEEEeCCC---------------
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR----HHA-------TVSIVHALT---------------  170 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~----~ga-------~V~v~~~~t---------------  170 (272)
                      -.+..|++..++-.+.+++.-+++++|+|.+ |-.++.+|..    +|.       .+++++++-               
T Consensus       276 aV~LAgll~A~r~~g~~l~d~riv~~GAGsA-giGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~  354 (563)
T PRK13529        276 AVTLAGLLAALKITGEPLSDQRIVFLGAGSA-GCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKP  354 (563)
T ss_pred             HHHHHHHHHHHHHhCCChhhcEEEEECCCHH-HHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHH
Confidence            4556788999999999999999999999998 9999998876    676       688887651               


Q ss_pred             -----------------CCHhhhcCCC--cEEEEecCCCccccCCCcCC------CcEEEEeeeCC
Q 024116          171 -----------------KNPEQITSEA--DIVIAAAGVANLVRGSWLKP------GAVVLDVGTCP  211 (272)
Q Consensus       171 -----------------~~l~~~l~~A--DIVIsa~g~p~~i~~~~vk~------g~vviDig~~~  211 (272)
                                       .+|.+.++.+  |++|-..+.|+.+++++++.      .-+|+=+. ||
T Consensus       355 fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NP  419 (563)
T PRK13529        355 YARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLS-NP  419 (563)
T ss_pred             HhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC-Cc
Confidence                             2577888888  99998888888888888743      45666665 44

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=97.06  E-value=0.024  Score=53.55  Aligned_cols=149  Identities=11%  Similarity=-0.016  Sum_probs=100.5

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEEcCC--CCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCcc
Q 024116           21 DSQTYVRNKIKACEEVGIKSIVTEFAD--GCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF   98 (272)
Q Consensus        21 ~s~~Y~~~~~~~~~~~Gi~~~~~~l~~--~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~   98 (272)
                      .|..=--+=..++.++|..+.++.-..  -...|.+.+.++-|+.-  +|+|.+.-|-..  ...++-++.    +   +
T Consensus        55 pSTRTR~SFE~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y--~D~iviR~~~~~--~~~~~a~~~----~---v  123 (334)
T PRK12562         55 DSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRM--YDGIQYRGHGQE--VVETLAEYA----G---V  123 (334)
T ss_pred             CCchhHHHHHHHHHHcCCeEEEeCCccccCCCCcCHHHHHHHHHHh--CCEEEEECCchH--HHHHHHHhC----C---C
Confidence            444444456788999999999774211  01235677777777774  889999876332  222222222    1   3


Q ss_pred             ccccccccccCCCCCccccCCHHH-HHHHHHHhCC-CCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCCC-----
Q 024116           99 HPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGV-EIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHALT-----  170 (272)
Q Consensus        99 ~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~-~l~gk~v~ViG~g-~~vG~~la~~L~~~ga~V~v~~~~t-----  170 (272)
                      -.+|.+       .+...||=+.+ ++.+.++.+. .++|++++++|-+ ..|.+.++..+...|++|++|.-..     
T Consensus       124 PVINa~-------~~~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~  196 (334)
T PRK12562        124 PVWNGL-------TNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEA  196 (334)
T ss_pred             CEEECC-------CCCCChHHHHHHHHHHHHHhCCCCcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcH
Confidence            445642       23467998888 5555556553 5899999999985 3479999999999999999986331     


Q ss_pred             --------------------CCHhhhcCCCcEEEEec
Q 024116          171 --------------------KNPEQITSEADIVIAAA  187 (272)
Q Consensus       171 --------------------~~l~~~l~~ADIVIsa~  187 (272)
                                          .++++.++.||+|.+-.
T Consensus       197 ~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~  233 (334)
T PRK12562        197 SLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDV  233 (334)
T ss_pred             HHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence                                45678899999999754

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.03  E-value=0.0017  Score=60.53  Aligned_cols=76  Identities=21%  Similarity=0.307  Sum_probs=49.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHh-CC-CEEEEEeCCC--------------------CCHhhhcCCCcEEEEecCCCc-
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQR-HH-ATVSIVHALT--------------------KNPEQITSEADIVIAAAGVAN-  191 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~-~g-a~V~v~~~~t--------------------~~l~~~l~~ADIVIsa~g~p~-  191 (272)
                      .-+++.|||+|.- ++.-+..|.. +. .+|.|.+|+.                    .+.++.+++|||||++|++.. 
T Consensus       127 ~~~~l~viGaG~Q-A~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~  205 (313)
T PF02423_consen  127 DARTLGVIGAGVQ-ARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTP  205 (313)
T ss_dssp             T--EEEEE--SHH-HHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSE
T ss_pred             CCceEEEECCCHH-HHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCC
Confidence            4578999999885 8887777654 44 4899998862                    357899999999999999655 


Q ss_pred             --cccCCCcCCCcEEEEeeeCC
Q 024116          192 --LVRGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       192 --~i~~~~vk~g~vviDig~~~  211 (272)
                        +++.+|+++|+.|.-+|...
T Consensus       206 ~P~~~~~~l~~g~hi~~iGs~~  227 (313)
T PF02423_consen  206 APVFDAEWLKPGTHINAIGSYT  227 (313)
T ss_dssp             EESB-GGGS-TT-EEEE-S-SS
T ss_pred             CccccHHHcCCCcEEEEecCCC
Confidence              58999999999999999763

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=97.02  E-value=0.021  Score=53.88  Aligned_cols=148  Identities=12%  Similarity=0.010  Sum_probs=97.9

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEEcCC--CCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCcc
Q 024116           21 DSQTYVRNKIKACEEVGIKSIVTEFAD--GCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF   98 (272)
Q Consensus        21 ~s~~Y~~~~~~~~~~~Gi~~~~~~l~~--~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~   98 (272)
                      .|..=--+-..+++++|..+.+..-..  -...+.+.+.++-|+.-  +|+|.+--|-..  ...++-++.    +   +
T Consensus        56 pSTRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~rvls~y--~D~iviR~~~~~--~~~~~a~~~----~---v  124 (331)
T PRK02102         56 TSTRTRCAFEVAAIDLGAHVTYLGPNDSQLGKKESIEDTARVLGRM--YDGIEYRGFKQE--IVEELAKYS----G---V  124 (331)
T ss_pred             CChhHHHHHHHHHHHcCCCEEEcCcccccCCCCcCHHHHHHHHhhc--CCEEEEECCchH--HHHHHHHhC----C---C
Confidence            344444456788999999998653211  01235677777777764  889998866322  222222222    1   3


Q ss_pred             ccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC--------
Q 024116           99 HPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL--------  169 (272)
Q Consensus        99 ~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g-~~vG~~la~~L~~~ga~V~v~~~~--------  169 (272)
                      -.+|.|.       +...||=+.+=+--+++....++|++++++|-+ ..|.+.++..+...|++|++++-.        
T Consensus       125 PVINa~~-------~~~HPtQaLaDl~Ti~e~~g~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~  197 (331)
T PRK02102        125 PVWNGLT-------DEWHPTQMLADFMTMKEHFGPLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEEL  197 (331)
T ss_pred             CEEECCC-------CCCChHHHHHHHHHHHHHhCCCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHH
Confidence            3455422       346799888844444444457999999999996 447999999999999999999632        


Q ss_pred             -----------------CCCHhhhcCCCcEEEEe
Q 024116          170 -----------------TKNPEQITSEADIVIAA  186 (272)
Q Consensus       170 -----------------t~~l~~~l~~ADIVIsa  186 (272)
                                       +.++++.++.||+|.+-
T Consensus       198 ~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~  231 (331)
T PRK02102        198 VALAREIAKETGAKITITEDPEEAVKGADVIYTD  231 (331)
T ss_pred             HHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence                             14567889999999974

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=97.02  E-value=0.017  Score=53.71  Aligned_cols=147  Identities=13%  Similarity=0.126  Sum_probs=99.6

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCcc
Q 024116           22 SQTYVRNKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF   98 (272)
Q Consensus        22 s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~   98 (272)
                      |..=--+-..++.++|..+.++.-+.+.   ..|.+.+..+-|+.-  +|+|.+--|  .+-...++.++.       .+
T Consensus        50 STRTR~SFe~A~~~LGg~~i~l~~~~~s~~~kgEsi~Dta~vls~y--~D~iviR~~--~~~~~~~~a~~s-------~v  118 (301)
T TIGR00670        50 STRTRLSFETAMKRLGGDVVNFSDSETSSVAKGETLADTIKTLSGY--SDAIVIRHP--LEGAARLAAEVS-------EV  118 (301)
T ss_pred             CchhHhHHHHHHHHcCCcEEEcCCCCcccCCCCcCHHHHHHHHHHh--CCEEEEECC--chhHHHHHHhhC-------CC
Confidence            4444445668899999988876541211   234567777777664  789998866  333333333332       23


Q ss_pred             ccccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCC--cccHHHHHHHHHhCCCEEEEEeCC------
Q 024116           99 HPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS--NIVGLPTSLLLQRHHATVSIVHAL------  169 (272)
Q Consensus        99 ~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~g--~~vG~~la~~L~~~ga~V~v~~~~------  169 (272)
                      -.+|.|.      ...+.||=+.+ ++.+.++.| +++|++|+++|-+  +.|.+.++..++..|++|++++-.      
T Consensus       119 PVINa~~------g~~~HPtQ~LaDl~Ti~e~~g-~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~  191 (301)
T TIGR00670       119 PVINAGD------GSNQHPTQTLLDLYTIYEEFG-RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPK  191 (301)
T ss_pred             CEEeCCC------CCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCH
Confidence            4455421      23467998888 455545555 7999999999996  457999999999999999999733      


Q ss_pred             ---------------CCCHhhhcCCCcEEEEe
Q 024116          170 ---------------TKNPEQITSEADIVIAA  186 (272)
Q Consensus       170 ---------------t~~l~~~l~~ADIVIsa  186 (272)
                                     +.++++.++.||+|.+-
T Consensus       192 ~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~  223 (301)
T TIGR00670       192 EILEELKAKGIKVRETESLEEVIDEADVLYVT  223 (301)
T ss_pred             HHHHHHHHcCCEEEEECCHHHHhCCCCEEEEC
Confidence                           24567889999998874

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=97.01  E-value=0.018  Score=54.50  Aligned_cols=145  Identities=10%  Similarity=0.070  Sum_probs=99.3

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCcc
Q 024116           22 SQTYVRNKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF   98 (272)
Q Consensus        22 s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~   98 (272)
                      |..=--+-..++.++|..+.++.- .+.   ..+.+.+.++-|+.-  +|+|.+--+  .+-...++-++       -.+
T Consensus        53 STRTR~SFe~A~~~LGg~~i~l~~-~~ss~~kgEsl~Dtarvls~y--~D~iviR~~--~~~~~~~~a~~-------~~v  120 (338)
T PRK02255         53 STRTRVSFETAMTQLGGHAQYLAP-GQIQLGGHESLEDTARVLSRL--VDIIMARVD--RHQTVVELAKY-------ATV  120 (338)
T ss_pred             CcchHHHHHHHHHHcCCeEEEeCc-ccccCCCCcCHHHHHHHHHHh--CcEEEEecC--ChHHHHHHHHh-------CCC
Confidence            333334567889999999887752 221   235577777777764  788888765  32222222222       123


Q ss_pred             ccccccccccCCCCCccccCCHHH-HHHHHHHhC--CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC------
Q 024116           99 HPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSG--VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL------  169 (272)
Q Consensus        99 ~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~--~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~------  169 (272)
                      -.+|.+       .+...||=+.+ ++.+.++.+  .+++|++|+++|-+..|.+.++..+...|++|++|+-.      
T Consensus       121 PVINa~-------~~~~HPtQaLaDl~Ti~e~~g~g~~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~  193 (338)
T PRK02255        121 PVINGM-------SDYNHPTQELGDLFTMIEHLPEGKKLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPE  193 (338)
T ss_pred             CEEECC-------CCCCChHHHHHHHHHHHHHhCCCCCCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCH
Confidence            445531       23367998888 555556654  36999999999997778999999999999999999633      


Q ss_pred             -------------------CCCHhhhcCCCcEEEE
Q 024116          170 -------------------TKNPEQITSEADIVIA  185 (272)
Q Consensus       170 -------------------t~~l~~~l~~ADIVIs  185 (272)
                                         +.++++.++.||+|.+
T Consensus       194 ~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~  228 (338)
T PRK02255        194 EHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYT  228 (338)
T ss_pred             HHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEE
Confidence                               2466789999999997

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=97.01  E-value=0.00093  Score=60.66  Aligned_cols=92  Identities=14%  Similarity=0.241  Sum_probs=70.5

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhC----CC-------EEEEEeCCC-----------------
Q 024116          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----HA-------TVSIVHALT-----------------  170 (272)
Q Consensus       119 Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~----ga-------~V~v~~~~t-----------------  170 (272)
                      |-.|++..++-.+.+|+..+++++|+|.+ |-.++.+|...    |.       .+++++++-                 
T Consensus         8 ~lAgll~Al~~~g~~l~d~riv~~GAGsA-g~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a   86 (255)
T PF03949_consen    8 VLAGLLNALRVTGKKLSDQRIVFFGAGSA-GIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFA   86 (255)
T ss_dssp             HHHHHHHHHHHHTS-GGG-EEEEEB-SHH-HHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHcEEEEeCCChh-HHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhh
Confidence            34678899999999999999999999987 99999888776    76       489998650                 


Q ss_pred             ---------CCHhhhcCCC--cEEEEecCCCccccCCCcCC------CcEEEEeeeCCC
Q 024116          171 ---------KNPEQITSEA--DIVIAAAGVANLVRGSWLKP------GAVVLDVGTCPV  212 (272)
Q Consensus       171 ---------~~l~~~l~~A--DIVIsa~g~p~~i~~~~vk~------g~vviDig~~~~  212 (272)
                               .+|.+.++.+  |++|-..|.|+.+++|+++.      .-+|+=+. ||.
T Consensus        87 ~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LS-NPt  144 (255)
T PF03949_consen   87 RKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLS-NPT  144 (255)
T ss_dssp             BSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-S-SSC
T ss_pred             ccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECC-CCC
Confidence                     2788999999  99999999999999998743      45676665 443

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.00  E-value=0.001  Score=61.43  Aligned_cols=74  Identities=26%  Similarity=0.342  Sum_probs=56.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC----------------CCHhhhcCCCcEEEEecCCCc---ccc
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT----------------KNPEQITSEADIVIAAAGVAN---LVR  194 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t----------------~~l~~~l~~ADIVIsa~g~p~---~i~  194 (272)
                      .++|.|||.|.+ |..++..|.+.|.  .|++++++.                .++.+.++++|+||.+++...   ++.
T Consensus         6 ~~~I~IIG~G~m-G~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~   84 (307)
T PRK07502          6 FDRVALIGIGLI-GSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAVAA   84 (307)
T ss_pred             CcEEEEEeeCHH-HHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHHHH
Confidence            368999999885 9999999998884  789888752                245567889999999998543   121


Q ss_pred             --CCCcCCCcEEEEeeeC
Q 024116          195 --GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       195 --~~~vk~g~vviDig~~  210 (272)
                        ..+++++.+|+|+|..
T Consensus        85 ~l~~~l~~~~iv~dvgs~  102 (307)
T PRK07502         85 EIAPHLKPGAIVTDVGSV  102 (307)
T ss_pred             HHHhhCCCCCEEEeCccc
Confidence              2457889999999863

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=96.98  E-value=0.028  Score=53.06  Aligned_cols=146  Identities=10%  Similarity=-0.064  Sum_probs=97.8

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEEcCCCCC----HHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccC
Q 024116           21 DSQTYVRNKIKACEEVGIKSIVTEFADGCT----EDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVD   96 (272)
Q Consensus        21 ~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~----~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvd   96 (272)
                      .|..=--+=..+++++|..+.+..  ...+    .+.+.+.++-|+.-  +|+|.+.-|-.  -...++-++.       
T Consensus        55 pSTRTR~SFe~A~~~LGg~~i~l~--~~~ss~~kgEsl~DTarvls~y--~D~iviR~~~~--~~~~~~a~~s-------  121 (332)
T PRK04284         55 DSTRTRCAFEVAAYDQGAHVTYLG--PTGSQMGKKESTKDTARVLGGM--YDGIEYRGFSQ--RTVETLAEYS-------  121 (332)
T ss_pred             CChhHHHHHHHHHHHcCCeEEEcC--CccccCCCCcCHHHHHHHHHHh--CCEEEEecCch--HHHHHHHHhC-------
Confidence            344334456678899999988643  2222    35677778777774  88999876532  2222332221       


Q ss_pred             ccccccccccccCCCCCccccCCHHHHHHHHHHh-CCCCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC-----
Q 024116           97 GFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRS-GVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL-----  169 (272)
Q Consensus        97 g~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~-~~~l~gk~v~ViG~g-~~vG~~la~~L~~~ga~V~v~~~~-----  169 (272)
                      .+-.+|.+       .+...||=+.+=+--+++. ..+++|++++++|-+ ..|.+.++..|...|++|++++-.     
T Consensus       122 ~vPVINa~-------~~~~HPtQaL~Dl~Ti~e~~~g~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~  194 (332)
T PRK04284        122 GVPVWNGL-------TDEDHPTQVLADFLTAKEHLKKPYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPD  194 (332)
T ss_pred             CCCEEECC-------CCCCChHHHHHHHHHHHHHhcCCcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCC
Confidence            13445531       2346799888844444444 347999999999975 347999999999999999998743     


Q ss_pred             --------------------CCCHhhhcCCCcEEEEe
Q 024116          170 --------------------TKNPEQITSEADIVIAA  186 (272)
Q Consensus       170 --------------------t~~l~~~l~~ADIVIsa  186 (272)
                                          +.++++.+++||+|.+-
T Consensus       195 ~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~  231 (332)
T PRK04284        195 DELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD  231 (332)
T ss_pred             HHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence                                14567889999999975

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.93  E-value=0.00093  Score=61.01  Aligned_cols=72  Identities=26%  Similarity=0.237  Sum_probs=54.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC---------------HhhhcCCCcEEEEecCCCc---ccc--CCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------------PEQITSEADIVIAAAGVAN---LVR--GSW  197 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~---------------l~~~l~~ADIVIsa~g~p~---~i~--~~~  197 (272)
                      +|.|||.|.+ |..++..|.+.|.+|++++++...               ..+.+++||+||.+++...   .+.  ...
T Consensus         2 ~I~IIG~G~m-G~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~~l~~~   80 (279)
T PRK07417          2 KIGIVGLGLI-GGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSEQLIPA   80 (279)
T ss_pred             eEEEEeecHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHHHHHHh
Confidence            6899999885 999999999999999999876321               1245789999999998432   121  134


Q ss_pred             cCCCcEEEEeeeC
Q 024116          198 LKPGAVVLDVGTC  210 (272)
Q Consensus       198 vk~g~vviDig~~  210 (272)
                      ++++++|.|++.-
T Consensus        81 l~~~~ii~d~~Sv   93 (279)
T PRK07417         81 LPPEAIVTDVGSV   93 (279)
T ss_pred             CCCCcEEEeCcch
Confidence            6788999999854

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=96.87  E-value=0.042  Score=53.55  Aligned_cols=150  Identities=13%  Similarity=0.029  Sum_probs=97.8

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCcc
Q 024116           22 SQTYVRNKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF   98 (272)
Q Consensus        22 s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~   98 (272)
                      |..=--+-..++.++|..+.++.=+.+.   ..|-+.+..+-|+.-  +|+|.+--|  .+-...++-++.       .+
T Consensus       137 STRTR~SFE~A~~~LGg~~i~l~~~~~ss~~kGESi~DTarvLs~y--~D~IviR~~--~~~~~~e~A~~s-------~v  205 (429)
T PRK11891        137 STRTRVSFGAAFCRLGGSVCDTTGFTFSSMAKGESIYDTSRVMSGY--VDALVIRHP--EQGSVAEFARAT-------NL  205 (429)
T ss_pred             CchhHHHHHHHHHHcCCeEEEeCCccccCCCCCCCHHHHHHHHHHh--CCEEEEeCC--chhHHHHHHHhC-------CC
Confidence            4433445667899999998877421111   124466666666653  788888765  322333333322       13


Q ss_pred             ccccccccccCCCCCccccCCHHH-HHHHHHHhCC---CCccceEEEEcCC--cccHHHHHHHHHhC-CCEEEEEeCC--
Q 024116           99 HPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGV---EIMGKNAVVIGRS--NIVGLPTSLLLQRH-HATVSIVHAL--  169 (272)
Q Consensus        99 ~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~---~l~gk~v~ViG~g--~~vG~~la~~L~~~-ga~V~v~~~~--  169 (272)
                      -.+|.|      +.+.+.||=+.+ ++.+.++.+.   .++|++|+++|-+  +-+.+.++..|... |++|++++-.  
T Consensus       206 PVINAg------dg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~  279 (429)
T PRK11891        206 PVINGG------DGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTL  279 (429)
T ss_pred             CEEECC------CCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCcc
Confidence            445542      134577998888 5666666542   4899999999996  34688888887776 9999998632  


Q ss_pred             -------------------CCCHhhhcCCCcEEEEecC
Q 024116          170 -------------------TKNPEQITSEADIVIAAAG  188 (272)
Q Consensus       170 -------------------t~~l~~~l~~ADIVIsa~g  188 (272)
                                         +.++.+.+++||+|++..+
T Consensus       280 ~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~  317 (429)
T PRK11891        280 EMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRI  317 (429)
T ss_pred             ccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence                               2467789999999998554

>PLN02342 ornithine carbamoyltransferase

Probab=96.87  E-value=0.023  Score=53.92  Aligned_cols=148  Identities=14%  Similarity=0.067  Sum_probs=99.9

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEEcCCC--CCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCcc
Q 024116           21 DSQTYVRNKIKACEEVGIKSIVTEFADG--CTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF   98 (272)
Q Consensus        21 ~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~--~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~   98 (272)
                      .|..=--+-..++.++|.++.++.-...  ...|.+.+.++-|..-  +|+|.+--|-..      .++.+...   -.+
T Consensus        95 pSTRTR~SFE~A~~~LGg~~i~l~~~~ss~~kGESl~DTarvLs~y--~D~IviR~~~~~------~~~~la~~---~~v  163 (348)
T PLN02342         95 PSMRTRVSFETGFFLLGGHALYLGPDDIQLGKREETRDIARVLSRY--NDIIMARVFAHQ------DVLDLAEY---SSV  163 (348)
T ss_pred             CCcchHHHHHHHHHHcCCcEEEeCcccccCCCCcCHHHHHHHHHHh--CCEEEEeCCChH------HHHHHHHh---CCC
Confidence            3433334556789999999988632110  0235577777777764  789998866332      22222211   123


Q ss_pred             ccccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC--------
Q 024116           99 HPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL--------  169 (272)
Q Consensus        99 ~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~--------  169 (272)
                      -.+|.+       .+.+.||=+.+ ++.+.++.| +++|++|+++|-+..|.+.++..+...|++|++|+-.        
T Consensus       164 PVINA~-------~~~~HPtQaLaDl~Ti~e~~G-~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~  235 (348)
T PLN02342        164 PVINGL-------TDYNHPCQIMADALTIIEHIG-RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKT  235 (348)
T ss_pred             CEEECC-------CCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHH
Confidence            455642       23467998888 455555555 7999999999998889999999999999999998632        


Q ss_pred             --------------CCCHhhhcCCCcEEEEec
Q 024116          170 --------------TKNPEQITSEADIVIAAA  187 (272)
Q Consensus       170 --------------t~~l~~~l~~ADIVIsa~  187 (272)
                                    +.++.+.++.||+|.+-.
T Consensus       236 ~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~  267 (348)
T PLN02342        236 VEKARAAGISKIEITNDPAEAVKGADVVYTDV  267 (348)
T ss_pred             HHHHHHhCCCcEEEEcCHHHHhCCCCEEEECC
Confidence                          245678899999999763

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.86  E-value=0.042  Score=51.21  Aligned_cols=149  Identities=13%  Similarity=0.183  Sum_probs=97.8

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCCC--CCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCccc
Q 024116           22 SQTYVRNKIKACEEVGIKSIVTEFADG--CTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFH   99 (272)
Q Consensus        22 s~~Y~~~~~~~~~~~Gi~~~~~~l~~~--~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~~   99 (272)
                      |..=--+-..++.++|.++.+..-...  ...|-+.+.++-|+.- ++|+|.+--|-.  -...++.+.       -.+-
T Consensus        56 STRTR~SFe~A~~~LGg~~i~l~~~~~~~~kgEs~~Dta~vls~y-~~D~iv~R~~~~--~~~~~~a~~-------~~vP  125 (305)
T PRK00856         56 STRTRLSFELAAKRLGADVINFSASTSSVSKGETLADTIRTLSAM-GADAIVIRHPQS--GAARLLAES-------SDVP  125 (305)
T ss_pred             CcchHHHHHHHHHHcCCcEEEeCCCcccCCCCcCHHHHHHHHHhc-CCCEEEEeCCCh--HHHHHHHHH-------CCCC
Confidence            544444667889999999876642210  0123455566666541 378888876622  222222222       1234


Q ss_pred             cccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCC--cccHHHHHHHHHhCCCEEEEEeCC-------
Q 024116          100 PLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS--NIVGLPTSLLLQRHHATVSIVHAL-------  169 (272)
Q Consensus       100 ~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~g--~~vG~~la~~L~~~ga~V~v~~~~-------  169 (272)
                      .+|.|.      .+.+.||=+.+ ++.+.++.| +++|++|+++|-+  +.+.+.++..+...|+++++++-.       
T Consensus       126 VINa~~------g~~~HPtQ~LaDl~Ti~e~~G-~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~  198 (305)
T PRK00856        126 VINAGD------GSHQHPTQALLDLLTIREEFG-RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGM  198 (305)
T ss_pred             EEECCC------CCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccc
Confidence            455421      23467998888 566665555 6999999999986  456999999999999999999732       


Q ss_pred             -----CCCHhhhcCCCcEEEEec
Q 024116          170 -----TKNPEQITSEADIVIAAA  187 (272)
Q Consensus       170 -----t~~l~~~l~~ADIVIsa~  187 (272)
                           +.++.+.++.||+|.+..
T Consensus       199 ~~~~~~~d~~ea~~~aDvvyt~~  221 (305)
T PRK00856        199 PEYGVHTDLDEVIEDADVVMMLR  221 (305)
T ss_pred             cceEEECCHHHHhCCCCEEEECC
Confidence                 246678999999998754

>PLN02527 aspartate carbamoyltransferase

Probab=96.84  E-value=0.033  Score=51.97  Aligned_cols=148  Identities=14%  Similarity=0.111  Sum_probs=97.7

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCC-CC---CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCc
Q 024116           22 SQTYVRNKIKACEEVGIKSIVTEFAD-GC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG   97 (272)
Q Consensus        22 s~~Y~~~~~~~~~~~Gi~~~~~~l~~-~~---~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg   97 (272)
                      |..=--+-..++.++|..+.+..-.. +.   ..|.+.+.++-|+.-  +|+|.+--|-..  ...++.++.       .
T Consensus        50 StRTR~SFe~A~~~LGg~~i~l~~~~~~s~~~kgEs~~Dta~vls~y--~D~iviR~~~~~--~~~~~a~~~-------~  118 (306)
T PLN02527         50 STRTRLSFESAMKRLGGEVLTTENAGEFSSAAKGETLEDTIRTVEGY--SDIIVLRHFESG--AARRAAATA-------E  118 (306)
T ss_pred             CchhHHHHHHHHHHcCCCEEEeCCCCCccccCCCcCHHHHHHHHHHh--CcEEEEECCChh--HHHHHHHhC-------C
Confidence            44444466788999999998886531 11   135577777777763  789998866332  333332222       1


Q ss_pred             cccccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCC-c-ccHHHHHHHHHhC-CCEEEEEeCC----
Q 024116           98 FHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS-N-IVGLPTSLLLQRH-HATVSIVHAL----  169 (272)
Q Consensus        98 ~~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~g-~-~vG~~la~~L~~~-ga~V~v~~~~----  169 (272)
                      +-.+|.|.      .+.+.||=+.+ ++.+.++.| +++|++|+++|-+ . -+.+.++..|... |++|+++.-.    
T Consensus       119 vPVINa~~------g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~  191 (306)
T PLN02527        119 IPVINAGD------GPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKM  191 (306)
T ss_pred             CCEEECCC------CCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCC
Confidence            33445421      23467998888 444444554 6999999999976 2 2588888888776 8999988632    


Q ss_pred             -----------------CCCHhhhcCCCcEEEEec
Q 024116          170 -----------------TKNPEQITSEADIVIAAA  187 (272)
Q Consensus       170 -----------------t~~l~~~l~~ADIVIsa~  187 (272)
                                       +.++++.++.||+|.+..
T Consensus       192 ~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~  226 (306)
T PLN02527        192 KDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTR  226 (306)
T ss_pred             CHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECC
Confidence                             246789999999999743

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.82  E-value=0.0028  Score=52.34  Aligned_cols=53  Identities=26%  Similarity=0.419  Sum_probs=44.0

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC------------------------CCHhhhcCCCcEEEEecCCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT------------------------KNPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t------------------------~~l~~~l~~ADIVIsa~g~p  190 (272)
                      ||.|||++|.||..++..|...+.  ++.++++..                        .+.++.+++|||||.+.|.|
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~   80 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP   80 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence            799999966679999999998883  788888762                        24468899999999999876

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK14805 ornithine carbamoyltransferase; Provisional

Probab=96.81  E-value=0.04  Score=51.31  Aligned_cols=146  Identities=11%  Similarity=0.062  Sum_probs=97.8

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCc
Q 024116           21 DSQTYVRNKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG   97 (272)
Q Consensus        21 ~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg   97 (272)
                      .|..=--+-..++.++|.++.+..- .+.   ..|.+.+.++-|+.-  +|+|.+--|-.  -...++.++.       .
T Consensus        48 pSTRTR~SFE~A~~~LGg~~i~l~~-~~ss~~kgEsl~Dt~~vls~y--~D~iviR~~~~--~~~~~~a~~~-------~  115 (302)
T PRK14805         48 PSLRTRVSFDIGINKLGGHCLYLDQ-QNGALGKRESVADFAANLSCW--ADAIVARVFSH--STIEQLAEHG-------S  115 (302)
T ss_pred             CCchHHHHHHHHHHHcCCcEEECCC-CcCcCCCCcCHHHHHHHHHHh--CCEEEEeCCCh--hHHHHHHHhC-------C
Confidence            3443344567889999999987642 211   235577777777764  88999886632  2222232221       1


Q ss_pred             cccccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------
Q 024116           98 FHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------  170 (272)
Q Consensus        98 ~~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t------  170 (272)
                      +-.+|.|.       +.+.||=+.+ ++.+.++. .+++|++++++|-+..|.+.++..+...|++|++++-..      
T Consensus       116 vPVINa~~-------~~~HPtQaL~Dl~Ti~e~~-g~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~  187 (302)
T PRK14805        116 VPVINALC-------DLYHPCQALADFLTLAEQF-GDVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQ  187 (302)
T ss_pred             CCEEECCC-------CCCChHHHHHHHHHHHHHh-CCcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHH
Confidence            34556422       2367998888 44444444 479999999999988899999999999999999997321      


Q ss_pred             -------------------CCHhhhcCCCcEEEEec
Q 024116          171 -------------------KNPEQITSEADIVIAAA  187 (272)
Q Consensus       171 -------------------~~l~~~l~~ADIVIsa~  187 (272)
                                         .++ +.++.||+|.+-+
T Consensus       188 ~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~  222 (302)
T PRK14805        188 IVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT  222 (302)
T ss_pred             HHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence                               232 4588999998743

>PRK06545 prephenate dehydrogenase; Validated

Probab=96.81  E-value=0.0024  Score=60.50  Aligned_cols=73  Identities=27%  Similarity=0.421  Sum_probs=55.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------------CCHhhhcCCCcEEEEecCCCc---cc--
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------------KNPEQITSEADIVIAAAGVAN---LV--  193 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t------------------~~l~~~l~~ADIVIsa~g~p~---~i--  193 (272)
                      ++|.|||.|.+ |.+++..|.+.|..|.+..++.                  .++.+.+++||+||-+++...   ++  
T Consensus         1 ~~I~iIG~Gli-G~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~~   79 (359)
T PRK06545          1 RTVLIVGLGLI-GGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAALLAE   79 (359)
T ss_pred             CeEEEEEeCHH-HHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHHHHHH
Confidence            47999999886 9999999999998877776542                  234556789999999998532   22  


Q ss_pred             -cCCCcCCCcEEEEeeeC
Q 024116          194 -RGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       194 -~~~~vk~g~vviDig~~  210 (272)
                       .+..++++++|.|++..
T Consensus        80 l~~~~l~~~~ivtDv~Sv   97 (359)
T PRK06545         80 LADLELKPGVIVTDVGSV   97 (359)
T ss_pred             HhhcCCCCCcEEEeCccc
Confidence             22247889999999865

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=96.79  E-value=0.0089  Score=57.73  Aligned_cols=95  Identities=23%  Similarity=0.292  Sum_probs=64.5

Q ss_pred             CCHHHHHHHHHHhC--CCCccceEEEEcC----------------CcccHHHHHHHHHhCCCEEEEEeCCCC--------
Q 024116          118 CTPKGCIELLIRSG--VEIMGKNAVVIGR----------------SNIVGLPTSLLLQRHHATVSIVHALTK--------  171 (272)
Q Consensus       118 ~Ta~g~~~~l~~~~--~~l~gk~v~ViG~----------------g~~vG~~la~~L~~~ga~V~v~~~~t~--------  171 (272)
                      +.+.-++..+++.-  .+++||+++|-|+                ||-+|+++|..|..+|++|+++++...        
T Consensus       168 ~~~~~I~~~~~~~~~~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~~~~~~~~  247 (399)
T PRK05579        168 AEPEEIVAAAERALSPKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLPTPAGVK  247 (399)
T ss_pred             CCHHHHHHHHHHHhhhcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCccccCCCCcE
Confidence            45666666655432  4689999999998                675699999999999999999876421        


Q ss_pred             --------CH----hhhcCCCcEEEEecCCCccc----cCCCcCCC--cEEEEeeeCCC
Q 024116          172 --------NP----EQITSEADIVIAAAGVANLV----RGSWLKPG--AVVLDVGTCPV  212 (272)
Q Consensus       172 --------~l----~~~l~~ADIVIsa~g~p~~i----~~~~vk~g--~vviDig~~~~  212 (272)
                              ++    .+...+.|++|.+.|...+-    ...-+|++  ...+.+--+|+
T Consensus       248 ~~dv~~~~~~~~~v~~~~~~~DilI~~Aav~d~~~~~~~~~Kikk~~~~~~l~L~~~pd  306 (399)
T PRK05579        248 RIDVESAQEMLDAVLAALPQADIFIMAAAVADYRPATVAEGKIKKGEGELTLELVPNPD  306 (399)
T ss_pred             EEccCCHHHHHHHHHHhcCCCCEEEEcccccccccccccccCccCCCCCceEEEEeCcH
Confidence                    11    23346789999888854432    22334443  35567766664

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.78  E-value=0.054  Score=50.67  Aligned_cols=147  Identities=10%  Similarity=0.031  Sum_probs=95.1

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCCCC----CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCc
Q 024116           22 SQTYVRNKIKACEEVGIKSIVTEFADGC----TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG   97 (272)
Q Consensus        22 s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~----~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg   97 (272)
                      |..=--+=..++.++|..+.+.  ....    ..|-+.+.++-|+.- .+++|.+--|  .+-...++.+.+      ..
T Consensus        56 STRTR~SFe~A~~~LGg~~~~~--~~~~s~~~kgEsl~Dtarvls~y-~~D~iv~R~~--~~~~~~~~a~~~------~~  124 (310)
T PRK13814         56 STRTRNSFEIAAKRLGAMVLNP--NLKISAISKGETLFDTIKTLEAM-GVYFFIVRHS--ENETPEQIAKQL------SS  124 (310)
T ss_pred             cchhHHHHHHHHHHhCCeEEEC--CCccccCCCCCCHHHHHHHHHHh-CCCEEEEeCC--chhHHHHHHHhC------CC
Confidence            3333335567888999977764  3221    124466666666652 3578877655  322223332322      12


Q ss_pred             cccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCC--cccHHHHHHHHHhCCC-EEEEEeCC-----
Q 024116           98 FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRS--NIVGLPTSLLLQRHHA-TVSIVHAL-----  169 (272)
Q Consensus        98 ~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g--~~vG~~la~~L~~~ga-~V~v~~~~-----  169 (272)
                      +-++|.|      +.+.+.||=+.+=+--+++...+++|++++++|-+  +.+.+.++..+...|. +|++++-.     
T Consensus       125 vPvINag------~g~~~HPtQaLaDl~Ti~e~~g~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~  198 (310)
T PRK13814        125 GVVINAG------DGNHQHPSQALIDLMTIKQHKPHWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPD  198 (310)
T ss_pred             CCeEECC------cCCCCCchHHHHHHHHHHHHhCCcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcC
Confidence            3445542      24567799888844444444346999999999986  4569999999999998 89998633     


Q ss_pred             ---------CCCHhhhcCCCcEEEE
Q 024116          170 ---------TKNPEQITSEADIVIA  185 (272)
Q Consensus       170 ---------t~~l~~~l~~ADIVIs  185 (272)
                               +.++.+.++.||+|.+
T Consensus       199 ~~~~~~~~~~~d~~ea~~~aDvvy~  223 (310)
T PRK13814        199 KVGNDSIKKFTELKPSLLNSDVIVT  223 (310)
T ss_pred             ccccceEEEEcCHHHHhCCCCEEEE
Confidence                     2567889999999986

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=96.77  E-value=0.0029  Score=59.61  Aligned_cols=70  Identities=21%  Similarity=0.219  Sum_probs=53.6

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCc---cccC-
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN---LVRG-  195 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~---~i~~-  195 (272)
                      ++||+|.|||.|.+ |++++..|...|.+|++..+..              .+..+.+++||+|+.+++...   ++.. 
T Consensus        15 L~gktIgIIG~Gsm-G~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~~~V~~~~   93 (330)
T PRK05479         15 IKGKKVAIIGYGSQ-GHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQAEVYEEE   93 (330)
T ss_pred             hCCCEEEEEeeHHH-HHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHHHHHHHHH
Confidence            68999999999985 9999999999999998876542              245678899999999998322   2311 


Q ss_pred             --CCcCCCcEE
Q 024116          196 --SWLKPGAVV  204 (272)
Q Consensus       196 --~~vk~g~vv  204 (272)
                        ..+++|+++
T Consensus        94 I~~~Lk~g~iL  104 (330)
T PRK05479         94 IEPNLKEGAAL  104 (330)
T ss_pred             HHhcCCCCCEE
Confidence              246777655

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=96.75  E-value=0.038  Score=51.48  Aligned_cols=156  Identities=15%  Similarity=0.188  Sum_probs=102.6

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCC--CCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHh
Q 024116           10 GLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADG--CTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILD   87 (272)
Q Consensus        10 ~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~--~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~   87 (272)
                      |.+..++=+  .|..=--+-..+++++|.++.++.-...  ...|.+.+.++-|+.-  +|+|.+--|-..  ....+.+
T Consensus        40 k~v~~lF~e--pSTRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y--~D~iv~R~~~~~--~~~~~a~  113 (304)
T TIGR00658        40 KTLALIFEK--PSTRTRVSFEVAAYQLGGHPLYLNPNDLQLGRGESIKDTARVLSRY--VDGIMARVYKHE--DVEELAK  113 (304)
T ss_pred             CEEEEEecC--CCcchHHHHHHHHHHcCCCEEEeCCccccCCCCCCHHHHHHHHHHh--CCEEEEECCChH--HHHHHHH
Confidence            344444432  3333334557889999999987743211  0135577777777764  788988866332  2222322


Q ss_pred             cCCcccccCccccccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEE
Q 024116           88 AVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV  166 (272)
Q Consensus        88 ~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~  166 (272)
                      ..       .+-.+|.|       .....||=+.+ ++.+.++.| .++|.+|+++|-...+.+.++..|...|++|+++
T Consensus       114 ~~-------~vPVINa~-------~~~~HPtQaL~Dl~Ti~e~~g-~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~  178 (304)
T TIGR00658       114 YA-------SVPVINGL-------TDLFHPCQALADLLTIIEHFG-KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVA  178 (304)
T ss_pred             hC-------CCCEEECC-------CCCCChHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEE
Confidence            22       13445642       13467998888 445545554 5999999999996678999999999999999999


Q ss_pred             eCC-------------------------CCCHhhhcCCCcEEEEe
Q 024116          167 HAL-------------------------TKNPEQITSEADIVIAA  186 (272)
Q Consensus       167 ~~~-------------------------t~~l~~~l~~ADIVIsa  186 (272)
                      +-.                         +.++++.+++||+|.+-
T Consensus       179 ~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~  223 (304)
T TIGR00658       179 TPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTD  223 (304)
T ss_pred             CCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            732                         13567889999999974

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.73  E-value=0.003  Score=60.43  Aligned_cols=75  Identities=19%  Similarity=0.231  Sum_probs=58.1

Q ss_pred             ccceEEEEcC-CcccHHHHHHHHHhC-CCEEEEEeCCC---CCHhhhcCCCcEEEEecCCCc---ccc---C--CCcCCC
Q 024116          135 MGKNAVVIGR-SNIVGLPTSLLLQRH-HATVSIVHALT---KNPEQITSEADIVIAAAGVAN---LVR---G--SWLKPG  201 (272)
Q Consensus       135 ~gk~v~ViG~-g~~vG~~la~~L~~~-ga~V~v~~~~t---~~l~~~l~~ADIVIsa~g~p~---~i~---~--~~vk~g  201 (272)
                      .-.+|+|||. |. +|..++..|.+. +.+|+.+++..   .++.+.+++||+||-|++...   ++.   +  .+++++
T Consensus         3 ~~~~I~IIGl~Gl-iGgslA~alk~~~~~~V~g~D~~d~~~~~~~~~v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~~   81 (370)
T PRK08818          3 AQPVVGIVGSAGA-YGRWLARFLRTRMQLEVIGHDPADPGSLDPATLLQRADVLIFSAPIRHTAALIEEYVALAGGRAAG   81 (370)
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHhcCCCEEEEEcCCccccCCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCCC
Confidence            4578999999 55 599999999975 67888887642   356788999999999998533   232   1  237999


Q ss_pred             cEEEEeeeC
Q 024116          202 AVVLDVGTC  210 (272)
Q Consensus       202 ~vviDig~~  210 (272)
                      ++|.|+|..
T Consensus        82 ~iVtDVgSv   90 (370)
T PRK08818         82 QLWLDVTSI   90 (370)
T ss_pred             eEEEECCCC
Confidence            999999975

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=96.73  E-value=0.0028  Score=58.07  Aligned_cols=69  Identities=22%  Similarity=0.316  Sum_probs=54.2

Q ss_pred             EEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCcc----cc--C---CC
Q 024116          141 VIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL----VR--G---SW  197 (272)
Q Consensus       141 ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~~----i~--~---~~  197 (272)
                      +||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+..    +.  .   ..
T Consensus         1 ~IGlG~m-G~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~   79 (288)
T TIGR01692         1 FIGLGNM-GGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPK   79 (288)
T ss_pred             CCcccHh-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhc
Confidence            4799886 9999999999999999998863              3567788999999999986442    21  1   24


Q ss_pred             cCCCcEEEEeeeC
Q 024116          198 LKPGAVVLDVGTC  210 (272)
Q Consensus       198 vk~g~vviDig~~  210 (272)
                      +++|.++||....
T Consensus        80 ~~~g~~vid~st~   92 (288)
T TIGR01692        80 VAKGSLLIDCSTI   92 (288)
T ss_pred             CCCCCEEEECCCC
Confidence            5778999998854

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.73  E-value=0.0036  Score=61.50  Aligned_cols=128  Identities=16%  Similarity=0.163  Sum_probs=72.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcC-CCcEEEEeeeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLK-PGAVVLDVGTCP  211 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk-~g~vviDig~~~  211 (272)
                      .+.+|+|+|+|.|++ |++++.+|.++|++|++++++.....+.+.+..+.+..-+.+    ++++. ...+|+--|+++
T Consensus        12 ~~~~~~v~v~G~G~s-G~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~----~~~~~~~d~vV~Spgi~~   86 (473)
T PRK00141         12 QELSGRVLVAGAGVS-GRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEA----SDQLDSFSLVVTSPGWRP   86 (473)
T ss_pred             cccCCeEEEEccCHH-HHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCc----hhHhcCCCEEEeCCCCCC
Confidence            468899999999997 999999999999999999875432222222222222111011    11222 134555555554


Q ss_pred             CCCCCCCCCCCCceEecccchhhhhh------hceEeccCCCcccHHHHHHHHHHHHHHH
Q 024116          212 VDVSVDPSCEYGYRLMGDVCYEEAMR------LASVITPVPGGVGPMTVAMLLSNTLDSA  265 (272)
Q Consensus       212 ~~~~~~~~~~~~~k~~Gdvd~~~~~~------~~~~~tpvpGGvGp~T~amL~~n~v~a~  265 (272)
                      ...........+-++.|++++.....      ....+--|-|--|.=|+.-|+.++++..
T Consensus        87 ~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~  146 (473)
T PRK00141         87 DSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG  146 (473)
T ss_pred             CCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence            32000000001235777777532110      0111223568889999999999988753

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.71  E-value=0.002  Score=51.50  Aligned_cols=74  Identities=24%  Similarity=0.274  Sum_probs=51.1

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC-CE-EEEEeCCC---CCH-------------------hhhcCCCcEEEEecCCC--c
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHH-AT-VSIVHALT---KNP-------------------EQITSEADIVIAAAGVA--N  191 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~g-a~-V~v~~~~t---~~l-------------------~~~l~~ADIVIsa~g~p--~  191 (272)
                      ||.|+|+.|.+|+.++.+|.++- ++ +.++.++.   +.+                   .+.+.++|+||.|++.-  .
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~   80 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK   80 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence            68999988889999999999854 34 44444433   111                   23468999999999842  1


Q ss_pred             cccCCCcCCCcEEEEeeeCC
Q 024116          192 LVRGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       192 ~i~~~~vk~g~vviDig~~~  211 (272)
                      -+-+..++.|..|||.+...
T Consensus        81 ~~~~~~~~~g~~ViD~s~~~  100 (121)
T PF01118_consen   81 ELAPKLLKAGIKVIDLSGDF  100 (121)
T ss_dssp             HHHHHHHHTTSEEEESSSTT
T ss_pred             HHHHHHhhCCcEEEeCCHHH
Confidence            23334578899999998765

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=96.70  E-value=0.0042  Score=57.31  Aligned_cols=72  Identities=17%  Similarity=0.252  Sum_probs=55.6

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEEEEecCCCc----cc-cCC---
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVAN----LV-RGS---  196 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIVIsa~g~p~----~i-~~~---  196 (272)
                      +|.+||.|.+ |.+++..|.+.|..|++++++.             .+..+..++||+||.+++.+.    .+ ..+   
T Consensus         2 ~Ig~IGlG~M-G~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~   80 (292)
T PRK15059          2 KLGFIGLGIM-GTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT   80 (292)
T ss_pred             eEEEEccCHH-HHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence            5899999986 9999999999999999998753             244567789999999998543    12 221   


Q ss_pred             -CcCCCcEEEEeeeC
Q 024116          197 -WLKPGAVVLDVGTC  210 (272)
Q Consensus       197 -~vk~g~vviDig~~  210 (272)
                       ..++|.++||++..
T Consensus        81 ~~~~~g~ivvd~sT~   95 (292)
T PRK15059         81 KASLKGKTIVDMSSI   95 (292)
T ss_pred             ccCCCCCEEEECCCC
Confidence             24778999998754

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=96.69  E-value=0.072  Score=49.63  Aligned_cols=147  Identities=13%  Similarity=0.128  Sum_probs=97.9

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEEcCCC--CCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCcc
Q 024116           21 DSQTYVRNKIKACEEVGIKSIVTEFADG--CTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF   98 (272)
Q Consensus        21 ~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~--~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~   98 (272)
                      .|..=--+-..+++++|.++.++.-...  ...|.+.+.++-|+.-  +|+|.+.-|-..  ...++.+.       -.+
T Consensus        53 ~STRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~~l~~~--~D~iv~R~~~~~--~~~~~a~~-------~~v  121 (304)
T PRK00779         53 PSTRTRVSFEVGMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSRY--VDAIMIRTFEHE--TLEELAEY-------STV  121 (304)
T ss_pred             CCchHHHHHHHHHHHcCCcEEEECcccccCCCCcCHHHHHHHHHHh--CCEEEEcCCChh--HHHHHHHh-------CCC
Confidence            3444344567899999999887743211  0134577777777764  788888766322  22222222       124


Q ss_pred             ccccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------
Q 024116           99 HPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------  170 (272)
Q Consensus        99 ~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------  170 (272)
                      -.+|.|.       +...||=+.+ +..+.++.| .++|++++++|-..-+.+.++..|...|++|++|+-..       
T Consensus       122 PVINag~-------~~~HPtQaL~Dl~Ti~e~~g-~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~  193 (304)
T PRK00779        122 PVINGLT-------DLSHPCQILADLLTIYEHRG-SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEI  193 (304)
T ss_pred             CEEeCCC-------CCCChHHHHHHHHHHHHHhC-CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHH
Confidence            5566532       2356887777 444444454 69999999999966679999999999999999996321       


Q ss_pred             ---------------CCHhhhcCCCcEEEEe
Q 024116          171 ---------------KNPEQITSEADIVIAA  186 (272)
Q Consensus       171 ---------------~~l~~~l~~ADIVIsa  186 (272)
                                     .++++.+++||+|.+-
T Consensus       194 ~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~  224 (304)
T PRK00779        194 VEKIAKETGASIEVTHDPKEAVKGADVVYTD  224 (304)
T ss_pred             HHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence                           4567889999999975

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=96.68  E-value=0.0053  Score=57.85  Aligned_cols=76  Identities=20%  Similarity=0.342  Sum_probs=61.2

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCC--CEEEEEeCCC---------------------CCHhhhcCCCcEEEEecCCCc
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALT---------------------KNPEQITSEADIVIAAAGVAN  191 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~g--a~V~v~~~~t---------------------~~l~~~l~~ADIVIsa~g~p~  191 (272)
                      .-+.+.|||+|.- ++.-++.+...-  -+|.|..|+.                     .+.++.++.|||||++|....
T Consensus       129 da~~laiIGaG~q-A~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~  207 (330)
T COG2423         129 DASTLAIIGAGAQ-ARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE  207 (330)
T ss_pred             CCcEEEEECCcHH-HHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC
Confidence            4578999999885 988887776543  3788888763                     456789999999999999544


Q ss_pred             -cccCCCcCCCcEEEEeeeCC
Q 024116          192 -LVRGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       192 -~i~~~~vk~g~vviDig~~~  211 (272)
                       +++.+|++||+.|.-+|.+.
T Consensus       208 Pil~~~~l~~G~hI~aiGad~  228 (330)
T COG2423         208 PVLKAEWLKPGTHINAIGADA  228 (330)
T ss_pred             CeecHhhcCCCcEEEecCCCC
Confidence             68999999999999999653

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=96.68  E-value=0.039  Score=52.59  Aligned_cols=150  Identities=16%  Similarity=0.069  Sum_probs=95.1

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCccEEEEcCCCC---CCCCHHHHHhcCC-cccc-cC--
Q 024116           27 RNKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLP---QHLDEGKILDAVS-LEKD-VD--   96 (272)
Q Consensus        27 ~~~~~~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~Gi~vq~Plp---~~~~~~~i~~~i~-p~KD-vd--   96 (272)
                      -+-..++.++|.++.++.- .+.   ..|-+.+.++-|+.-  +|+|.+-.|-.   .+-...++.+... .-|| |.  
T Consensus        58 ~SFE~A~~~LGg~~i~l~~-~~s~~~kgEsl~Dtarvls~y--~D~Iv~R~~~~~~~~~~~l~~~a~~~~~~~~~~~~~s  134 (357)
T TIGR03316        58 FSFASAMNLLGLHAQDLDE-GKSQIGHGETVRETAEMISFF--ADGIGIRDDMYIGVGNAYMREVAKYVQEGYKDGVLEQ  134 (357)
T ss_pred             HHHHHHHHHcCCcEEEeCC-ccccCCCCCCHHHHHHHHHHh--CcEEEEeCCCccccccHHHHHHHHhhhhccccccccC
Confidence            3556788999999988763 221   135577777777763  78999887642   1111122333311 1122 00  


Q ss_pred             ccccccccccccCCCCCccccCCHHH-HHHHHHHhCC--CCccceEEEEcCC-------cccHHHHHHHHHhCCCEEEEE
Q 024116           97 GFHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGV--EIMGKNAVVIGRS-------NIVGLPTSLLLQRHHATVSIV  166 (272)
Q Consensus        97 g~~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~--~l~gk~v~ViG~g-------~~vG~~la~~L~~~ga~V~v~  166 (272)
                      .+-.+|.|       .+.+.||=+.+ ++.+.++.|.  +++|++++++|.|       ..|.+.++.++...|++|+++
T Consensus       135 ~vPVINa~-------~~~~HPtQaLaDl~Ti~e~~G~~~~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~  207 (357)
T TIGR03316       135 RPPLVNLQ-------CDIDHPTQAMADIMTLQEKFGGIENLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLA  207 (357)
T ss_pred             CCCEEECC-------CCCCCchHHHHHHHHHHHHhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEE
Confidence            12344542       23477998888 5555566663  4899999999742       356788888899999999999


Q ss_pred             eCC-------------------------CCCHhhhcCCCcEEEEe
Q 024116          167 HAL-------------------------TKNPEQITSEADIVIAA  186 (272)
Q Consensus       167 ~~~-------------------------t~~l~~~l~~ADIVIsa  186 (272)
                      +-.                         +.++.+.+++||+|.+-
T Consensus       208 ~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~  252 (357)
T TIGR03316       208 HPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDADIVYPK  252 (357)
T ss_pred             CCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence            743                         13556888999998865

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.66  E-value=0.0044  Score=56.53  Aligned_cols=72  Identities=11%  Similarity=0.224  Sum_probs=53.7

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCC----CEEEEEeCCC----------------CCHhhhcCCCcEEEEecCCCcc--
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHH----ATVSIVHALT----------------KNPEQITSEADIVIAAAGVANL--  192 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~g----a~V~v~~~~t----------------~~l~~~l~~ADIVIsa~g~p~~--  192 (272)
                      ++.++.+||.|.+ |.+++..|.+.|    .+|++++|+.                .+..+.+++||+||.++....+  
T Consensus         2 ~~mkI~~IG~G~m-G~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~~   80 (279)
T PRK07679          2 SIQNISFLGAGSI-AEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVAE   80 (279)
T ss_pred             CCCEEEEECccHH-HHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHHH
Confidence            3468999999886 999999999987    5789998753                1334567899999999984332  


Q ss_pred             -cc--CCCcCCCcEEEEe
Q 024116          193 -VR--GSWLKPGAVVLDV  207 (272)
Q Consensus       193 -i~--~~~vk~g~vviDi  207 (272)
                       +.  ...++++.+|||+
T Consensus        81 vl~~l~~~~~~~~liIs~   98 (279)
T PRK07679         81 ALIPFKEYIHNNQLIISL   98 (279)
T ss_pred             HHHHHHhhcCCCCEEEEE
Confidence             21  1346778899997

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.66  E-value=0.0047  Score=56.97  Aligned_cols=72  Identities=18%  Similarity=0.253  Sum_probs=55.0

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCC---CcEEEEecCCCc----ccc--
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSE---ADIVIAAAGVAN----LVR--  194 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~---ADIVIsa~g~p~----~i~--  194 (272)
                      ++.+||.|.+ |.+++..|.+.|.+|++++++.              .+.++..++   +|+||++++.+.    .+.  
T Consensus         2 ~Ig~IGlG~m-G~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i   80 (299)
T PRK12490          2 KLGLIGLGKM-GGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDL   80 (299)
T ss_pred             EEEEEcccHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHH
Confidence            6899999986 9999999999999999999863              244555554   699999998652    121  


Q ss_pred             CCCcCCCcEEEEeeeC
Q 024116          195 GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       195 ~~~vk~g~vviDig~~  210 (272)
                      ...+++|.++||++..
T Consensus        81 ~~~l~~g~ivid~st~   96 (299)
T PRK12490         81 YPLLSPGDIVVDGGNS   96 (299)
T ss_pred             hccCCCCCEEEECCCC
Confidence            1235788999999654

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=96.66  E-value=0.006  Score=61.16  Aligned_cols=94  Identities=13%  Similarity=0.227  Sum_probs=76.0

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHh-----CCC-------EEEEEeCCC--------------
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR-----HHA-------TVSIVHALT--------------  170 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~-----~ga-------~V~v~~~~t--------------  170 (272)
                      -++..|++..++-.+.+++..+++++|+|.+ |..++.+|..     .|.       .+++++++-              
T Consensus       302 aV~lAgll~A~r~~g~~l~d~riv~~GAGsA-gigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k  380 (581)
T PLN03129        302 AVALAGLLAALRATGGDLADQRILFAGAGEA-GTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFK  380 (581)
T ss_pred             HHHHHHHHHHHHHhCCchhhceEEEECCCHH-HHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHH
Confidence            4455778999999999999999999999998 9999998876     465       688887641              


Q ss_pred             ----------CCHhhhcCC--CcEEEEecCCCccccCCCcC------CCcEEEEeeeCCC
Q 024116          171 ----------KNPEQITSE--ADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  212 (272)
Q Consensus       171 ----------~~l~~~l~~--ADIVIsa~g~p~~i~~~~vk------~g~vviDig~~~~  212 (272)
                                .+|.+.++.  +|++|-+.+.|+.+++++++      +.-+|+=+. ||.
T Consensus       381 ~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLS-NPt  439 (581)
T PLN03129        381 KPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALS-NPT  439 (581)
T ss_pred             HHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC-CCC
Confidence                      357788888  89999999888999998885      456777776 554

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.65  E-value=0.0036  Score=60.65  Aligned_cols=73  Identities=26%  Similarity=0.307  Sum_probs=54.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC---------------Hhhh---------------cCCCcEEEEe
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------------PEQI---------------TSEADIVIAA  186 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~---------------l~~~---------------l~~ADIVIsa  186 (272)
                      ++|.|||.|.+ |.++|..|++.|.+|+.++++...               +.+.               .++||+||.+
T Consensus         4 ~kI~VIGlG~~-G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~   82 (415)
T PRK11064          4 ETISVIGLGYI-GLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA   82 (415)
T ss_pred             cEEEEECcchh-hHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence            68999999885 999999999999999999876421               2222               3479999999


Q ss_pred             cCCC---------cccc------CCCcCCCcEEEEeeeC
Q 024116          187 AGVA---------NLVR------GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       187 ~g~p---------~~i~------~~~vk~g~vviDig~~  210 (272)
                      ++.|         ..+.      ...+++|++||+...-
T Consensus        83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv  121 (415)
T PRK11064         83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTS  121 (415)
T ss_pred             cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence            9976         1121      1245788888887653

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.65  E-value=0.0044  Score=57.46  Aligned_cols=53  Identities=23%  Similarity=0.353  Sum_probs=43.0

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC--CEEEEEeCCCC------------------------CHhhhcCCCcEEEEecCCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALTK------------------------NPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~g--a~V~v~~~~t~------------------------~l~~~l~~ADIVIsa~g~p  190 (272)
                      +||.|||+|+ ||++++..|+.+|  .++++++++.+                        .-.+.+++||+||.++|.|
T Consensus         1 ~kI~IIGaG~-vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~   79 (306)
T cd05291           1 RKVVIIGAGH-VGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP   79 (306)
T ss_pred             CEEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence            4899999988 5999999999999  37999987531                        1135578999999999976

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.65  E-value=0.0044  Score=59.95  Aligned_cols=37  Identities=27%  Similarity=0.432  Sum_probs=33.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++++|+|+|+|.|. +|++++..|+++|++|++++++.
T Consensus         2 ~~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          2 ELKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCc
Confidence            46899999999999 59999999999999999998864

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=96.64  E-value=0.0088  Score=59.75  Aligned_cols=95  Identities=15%  Similarity=0.209  Sum_probs=74.6

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHh----CCC-------EEEEEeCCC--------------
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR----HHA-------TVSIVHALT--------------  170 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~----~ga-------~V~v~~~~t--------------  170 (272)
                      --++..|++..++-.+.+++.-+++++|+|.+ |..++.+|..    .|.       .+++++++-              
T Consensus       277 aaV~lAgll~Alr~~g~~l~d~riv~~GAGsA-giGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k  355 (559)
T PTZ00317        277 GAVIAAGFLNALKLSGVPPEEQRIVFFGAGSA-AIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHK  355 (559)
T ss_pred             HHHHHHHHHHHHHHhCCChhhcEEEEECCCHH-HHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHH
Confidence            34566788999999999999999999999998 9999998873    676       688887540              


Q ss_pred             ---------------CCHhhhcCCC--cEEEEecCCCccccCCCcC------CCcEEEEeeeCCC
Q 024116          171 ---------------KNPEQITSEA--DIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  212 (272)
Q Consensus       171 ---------------~~l~~~l~~A--DIVIsa~g~p~~i~~~~vk------~g~vviDig~~~~  212 (272)
                                     .+|.+.++.+  |++|-+.+.|+.+++++++      +.-+|+=+. ||.
T Consensus       356 ~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLS-NPt  419 (559)
T PTZ00317        356 VPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLS-NPT  419 (559)
T ss_pred             HHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC-CCC
Confidence                           1477788888  9999988888888888874      345666665 443

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.63  E-value=0.004  Score=56.97  Aligned_cols=72  Identities=15%  Similarity=0.189  Sum_probs=53.0

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------------------------------CCHhhhcC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------------------------KNPEQITS  178 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------------------------------~~l~~~l~  178 (272)
                      ++|.|||.|.+ |.++|..|++.|.+|++++++.                                      .++.+.++
T Consensus         2 ~~V~VIG~G~m-G~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   80 (288)
T PRK09260          2 EKLVVVGAGVM-GRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA   80 (288)
T ss_pred             cEEEEECccHH-HHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence            57999999885 9999999999999999997642                                      23456789


Q ss_pred             CCcEEEEecCCCcc-----cc--CCCcCCCcEE-EEeee
Q 024116          179 EADIVIAAAGVANL-----VR--GSWLKPGAVV-LDVGT  209 (272)
Q Consensus       179 ~ADIVIsa~g~p~~-----i~--~~~vk~g~vv-iDig~  209 (272)
                      +||+||.+++...-     +.  .+.+++++++ +|...
T Consensus        81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt  119 (288)
T PRK09260         81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTST  119 (288)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence            99999999985421     11  1345677654 55554

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.58  E-value=0.0038  Score=52.30  Aligned_cols=51  Identities=27%  Similarity=0.296  Sum_probs=43.7

Q ss_pred             EEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------CHhhhcCCCcEEEEecCC
Q 024116          139 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------NPEQITSEADIVIAAAGV  189 (272)
Q Consensus       139 v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------------~l~~~l~~ADIVIsa~g~  189 (272)
                      |+|+|++|.+|+.++..|.++|.+|+.+.|+..                   .+.+.++.+|.||.+.|.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            689999888999999999999999999988742                   235678899999999884

...

>PRK08655 prephenate dehydrogenase; Provisional

Probab=96.58  E-value=0.0052  Score=59.97  Aligned_cols=71  Identities=21%  Similarity=0.343  Sum_probs=55.1

Q ss_pred             eEEEEc-CCcccHHHHHHHHHhCCCEEEEEeCCCC---------------CHhhhcCCCcEEEEecCCCc---ccc--CC
Q 024116          138 NAVVIG-RSNIVGLPTSLLLQRHHATVSIVHALTK---------------NPEQITSEADIVIAAAGVAN---LVR--GS  196 (272)
Q Consensus       138 ~v~ViG-~g~~vG~~la~~L~~~ga~V~v~~~~t~---------------~l~~~l~~ADIVIsa~g~p~---~i~--~~  196 (272)
                      ++.||| .|. +|..++..|.+.|..|+++.++.+               +..+.+.+||+||.+++...   .+.  ..
T Consensus         2 kI~IIGG~G~-mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~~l~~   80 (437)
T PRK08655          2 KISIIGGTGG-LGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVIKEVAP   80 (437)
T ss_pred             EEEEEecCCH-HHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHHHHHHh
Confidence            689998 566 599999999999999999987632               34566789999999998532   221  23


Q ss_pred             CcCCCcEEEEeee
Q 024116          197 WLKPGAVVLDVGT  209 (272)
Q Consensus       197 ~vk~g~vviDig~  209 (272)
                      +++++++|+|++.
T Consensus        81 ~l~~~~iViDvsS   93 (437)
T PRK08655         81 HVKEGSLLMDVTS   93 (437)
T ss_pred             hCCCCCEEEEccc
Confidence            5788999999996

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=96.58  E-value=0.051  Score=51.41  Aligned_cols=144  Identities=15%  Similarity=0.047  Sum_probs=92.1

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCccccccc
Q 024116           27 RNKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNI  103 (272)
Q Consensus        27 ~~~~~~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~~~~n~  103 (272)
                      -+=..++.++|..+.+..=+.+.   ..|.+.+..+-|+.-  +|+|.+--|-..  ...++.++.       .+-.+|.
T Consensus        60 ~SFe~A~~~LGg~~i~~~~~~~s~~~kgEsl~Dtarvls~y--~D~IviR~~~~~--~~~~~a~~~-------~vPVINa  128 (338)
T PRK08192         60 VSFGCAFNLLGGHVRETTGMASSSLSKGESLYDTARVLSTY--SDVIAMRHPDAG--SVKEFAEGS-------RVPVING  128 (338)
T ss_pred             HHHHHHHHHcCCcEEeecCcccccCCCCCCHHHHHHHHHHc--CCEEEEeCCchh--HHHHHHHhC-------CCCEEEC
Confidence            35567899999998864211111   234567777777764  789998866332  223332221       1334454


Q ss_pred             cccccCCCCCccccCCHHH-HHHHHHHh---CCCCccceEEEEcCC--cccHHHHHHHHHhC-CCEEEEEeCC-------
Q 024116          104 GNLAMRGREPLFIPCTPKG-CIELLIRS---GVEIMGKNAVVIGRS--NIVGLPTSLLLQRH-HATVSIVHAL-------  169 (272)
Q Consensus       104 g~l~~~~~~~~~~p~Ta~g-~~~~l~~~---~~~l~gk~v~ViG~g--~~vG~~la~~L~~~-ga~V~v~~~~-------  169 (272)
                      |.      .+.+.||=+.+ ++.+.++.   |-+++|++++++|-+  +-+.+.++..|... |++|++++-.       
T Consensus       129 ~~------g~~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~  202 (338)
T PRK08192        129 GD------GSNEHPTQALLDLFTIQKELAHAGRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDY  202 (338)
T ss_pred             CC------CCCCCcHHHHHHHHHHHHHhhccCCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHH
Confidence            21      13467998888 55555543   347999999999996  34577777766634 8999888632       


Q ss_pred             --------------CCCHhhhcCCCcEEEEec
Q 024116          170 --------------TKNPEQITSEADIVIAAA  187 (272)
Q Consensus       170 --------------t~~l~~~l~~ADIVIsa~  187 (272)
                                    +.++++.+++||+|++..
T Consensus       203 ~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~  234 (338)
T PRK08192        203 VISDIENAGHKITITDQLEGNLDKADILYLTR  234 (338)
T ss_pred             HHHHHHHcCCeEEEEcCHHHHHccCCEEEEcC
Confidence                          146678999999999853

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.57  E-value=0.0043  Score=56.73  Aligned_cols=72  Identities=18%  Similarity=0.274  Sum_probs=52.6

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC----EEEEEeCCC---------------CCHhhhcCCCcEEEEecCCCcc----c
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHA----TVSIVHALT---------------KNPEQITSEADIVIAAAGVANL----V  193 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga----~V~v~~~~t---------------~~l~~~l~~ADIVIsa~g~p~~----i  193 (272)
                      +++.+||.|.+ |.+++..|.+.|.    +|++++++.               .+..+.+++||+||.++. |..    +
T Consensus         3 ~~IgfIG~G~M-G~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl   80 (272)
T PRK12491          3 KQIGFIGCGNM-GIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI   80 (272)
T ss_pred             CeEEEECccHH-HHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH
Confidence            47999999886 9999999998873    688888653               233456788999999998 432    2


Q ss_pred             c--CCCcCCCcEEEEeeeC
Q 024116          194 R--GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       194 ~--~~~vk~g~vviDig~~  210 (272)
                      .  ...++++.+|||+.--
T Consensus        81 ~~l~~~~~~~~lvISi~AG   99 (272)
T PRK12491         81 NQIKDQIKNDVIVVTIAAG   99 (272)
T ss_pred             HHHHHhhcCCcEEEEeCCC
Confidence            1  1235677888888643

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.54  E-value=0.0042  Score=57.85  Aligned_cols=72  Identities=17%  Similarity=0.175  Sum_probs=55.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------------------CCHhhhcCCCcEEEEecC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------KNPEQITSEADIVIAAAG  188 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t----------------------------~~l~~~l~~ADIVIsa~g  188 (272)
                      .+|.|||.|.+ |.+++..|.+.|.+|++.+|+.                            .++.+.++++|+||.++.
T Consensus         5 m~I~iIG~G~m-G~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~   83 (328)
T PRK14618          5 MRVAVLGAGAW-GTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP   83 (328)
T ss_pred             CeEEEECcCHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence            57999999886 9999999999999999998752                            134456788999999998


Q ss_pred             CCcccc-CCCcCCCcEEEEeee
Q 024116          189 VANLVR-GSWLKPGAVVLDVGT  209 (272)
Q Consensus       189 ~p~~i~-~~~vk~g~vviDig~  209 (272)
                      ...+-. -+.++++.+++++..
T Consensus        84 ~~~~~~v~~~l~~~~~vi~~~~  105 (328)
T PRK14618         84 SKALRETLAGLPRALGYVSCAK  105 (328)
T ss_pred             hHHHHHHHHhcCcCCEEEEEee
Confidence            654311 134677888998864

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=96.50  E-value=0.0045  Score=57.10  Aligned_cols=72  Identities=18%  Similarity=0.159  Sum_probs=54.3

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------CH---hhhcCCCcEEEEecCCCc---ccc--C
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------NP---EQITSEADIVIAAAGVAN---LVR--G  195 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~--------------~l---~~~l~~ADIVIsa~g~p~---~i~--~  195 (272)
                      +|.|||.|.+ |.+++..|.+.|.+|++.+|+..              ++   .+.+.++|+||.+++...   .++  .
T Consensus         2 ~Ig~IGlG~m-G~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l~   80 (298)
T TIGR00872         2 QLGLIGLGRM-GANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEELA   80 (298)
T ss_pred             EEEEEcchHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHHH
Confidence            6899999886 99999999999999999988631              22   234567899999988642   121  1


Q ss_pred             CCcCCCcEEEEeeeC
Q 024116          196 SWLKPGAVVLDVGTC  210 (272)
Q Consensus       196 ~~vk~g~vviDig~~  210 (272)
                      ..+++|.+|||.+..
T Consensus        81 ~~l~~g~ivid~st~   95 (298)
T TIGR00872        81 PTLEKGDIVIDGGNS   95 (298)
T ss_pred             hhCCCCCEEEECCCC
Confidence            346788999998765

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=96.50  E-value=0.0062  Score=56.99  Aligned_cols=55  Identities=20%  Similarity=0.249  Sum_probs=44.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~  189 (272)
                      ++||++.|||.|.+ |.+++..|.+.|.+|++..+..              .+..+.+++||+|+.+++-
T Consensus         1 l~~kkIgiIG~G~m-G~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp   69 (314)
T TIGR00465         1 LKGKTVAIIGYGSQ-GHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPD   69 (314)
T ss_pred             CCcCEEEEEeEcHH-HHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCc
Confidence            57999999999986 9999999999998877654332              1345678999999999984

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=96.47  E-value=0.0076  Score=53.81  Aligned_cols=53  Identities=21%  Similarity=0.273  Sum_probs=44.2

Q ss_pred             cccCCHHHHHHHHH----HhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE-EEeC
Q 024116          115 FIPCTPKGCIELLI----RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS-IVHA  168 (272)
Q Consensus       115 ~~p~Ta~g~~~~l~----~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~-v~~~  168 (272)
                      -.|.|++|+...++    +.+.+++|++|+|.|.|. ||+.++.+|.+.|++|+ |+++
T Consensus         6 ~~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~-VG~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076           6 REEATGRGVAYATREALKKLGIGLAGARVAIQGFGN-VGSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             CCccchHHHHHHHHHHHHhcCCCccCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEECC
Confidence            34789998766654    556789999999999988 59999999999999887 7766

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=96.46  E-value=0.0077  Score=54.76  Aligned_cols=54  Identities=20%  Similarity=0.159  Sum_probs=44.6

Q ss_pred             cccCCHHHHHHH----HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE-EEeCC
Q 024116          115 FIPCTPKGCIEL----LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS-IVHAL  169 (272)
Q Consensus       115 ~~p~Ta~g~~~~----l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~-v~~~~  169 (272)
                      -.+.|++|++..    +++.+.+++|++|+|-|.|. ||+.++.+|.++|++|+ |++++
T Consensus        13 R~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGn-VG~~~a~~L~e~GakvvaVsD~~   71 (254)
T cd05313          13 RPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGN-VAQYAAEKLLELGAKVVTLSDSK   71 (254)
T ss_pred             CCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEECCC
Confidence            347888886655    45568899999999999988 59999999999999877 77643

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK06199 ornithine cyclodeaminase; Validated

Probab=96.46  E-value=0.006  Score=58.50  Aligned_cols=75  Identities=23%  Similarity=0.324  Sum_probs=58.4

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHh-C-C-CEEEEEeCCC-----------------------CCHhhhcCCCcEEEEecC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQR-H-H-ATVSIVHALT-----------------------KNPEQITSEADIVIAAAG  188 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~-~-g-a~V~v~~~~t-----------------------~~l~~~l~~ADIVIsa~g  188 (272)
                      .-+++.|||+|.- ++.-+..++. + + .+|.+.+|+.                       .+.++.+++||||+++|+
T Consensus       154 da~~l~iiG~G~Q-A~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~  232 (379)
T PRK06199        154 DSKVVGLLGPGVM-GKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNS  232 (379)
T ss_pred             CCCEEEEECCcHH-HHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccC
Confidence            4588999999886 9988888776 3 2 4899988762                       235677899999999997


Q ss_pred             CC-------ccccCCCcCCCcEEEEeeeC
Q 024116          189 VA-------NLVRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       189 ~p-------~~i~~~~vk~g~vviDig~~  210 (272)
                      ..       .+++.+|+++|+.|+=+|..
T Consensus       233 s~~~~~s~~Pv~~~~~lkpG~hv~~ig~~  261 (379)
T PRK06199        233 GETGDPSTYPYVKREWVKPGAFLLMPAAC  261 (379)
T ss_pred             CCCCCCCcCcEecHHHcCCCcEEecCCcc
Confidence            42       35899999999988777654

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.43  E-value=0.0085  Score=55.27  Aligned_cols=72  Identities=19%  Similarity=0.270  Sum_probs=54.0

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCC---CcEEEEecCCCcc----cc--
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSE---ADIVIAAAGVANL----VR--  194 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~---ADIVIsa~g~p~~----i~--  194 (272)
                      +|.+||.|.+ |.+++..|.+.|.+|++++++.              .+..+.++.   +|+||++++.+..    +.  
T Consensus         2 ~Ig~IGlG~M-G~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l   80 (301)
T PRK09599          2 QLGMIGLGRM-GGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDEL   80 (301)
T ss_pred             EEEEEcccHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHH
Confidence            6899999886 9999999999999999999863              234444544   6999999886521    21  


Q ss_pred             CCCcCCCcEEEEeeeC
Q 024116          195 GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       195 ~~~vk~g~vviDig~~  210 (272)
                      ...+++|.++||.+..
T Consensus        81 ~~~l~~g~ivid~st~   96 (301)
T PRK09599         81 APLLSPGDIVIDGGNS   96 (301)
T ss_pred             HhhCCCCCEEEeCCCC
Confidence            1346778899998654

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.42  E-value=0.0063  Score=52.24  Aligned_cols=31  Identities=23%  Similarity=0.326  Sum_probs=26.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +|.|||+|.+ |+.++.+++..|..|++++++
T Consensus         1 ~V~ViGaG~m-G~~iA~~~a~~G~~V~l~d~~   31 (180)
T PF02737_consen    1 KVAVIGAGTM-GRGIAALFARAGYEVTLYDRS   31 (180)
T ss_dssp             EEEEES-SHH-HHHHHHHHHHTTSEEEEE-SS
T ss_pred             CEEEEcCCHH-HHHHHHHHHhCCCcEEEEECC
Confidence            6899999886 999999999999999999865

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=96.40  E-value=0.007  Score=55.71  Aligned_cols=74  Identities=20%  Similarity=0.342  Sum_probs=55.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------------------CCHhhhcCCCcEEEEecC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------KNPEQITSEADIVIAAAG  188 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t----------------------------~~l~~~l~~ADIVIsa~g  188 (272)
                      .+|.|||.|.+ |.+++..|++.|.+|++++++.                            .+..+.++++|+||.++.
T Consensus         2 mkI~iiG~G~m-G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (325)
T PRK00094          2 MKIAVLGAGSW-GTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVP   80 (325)
T ss_pred             CEEEEECCCHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCC
Confidence            37999999885 9999999999999999998752                            133456679999999998


Q ss_pred             CCcc---cc--CCCcCCCcEEEEe--eeCC
Q 024116          189 VANL---VR--GSWLKPGAVVLDV--GTCP  211 (272)
Q Consensus       189 ~p~~---i~--~~~vk~g~vviDi--g~~~  211 (272)
                      ....   +.  ..+++++.++|++  |+.+
T Consensus        81 ~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         81 SQALREVLKQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             HHHHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence            6431   21  1245778899998  4443

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.40  E-value=0.006  Score=59.50  Aligned_cols=123  Identities=21%  Similarity=0.152  Sum_probs=72.8

Q ss_pred             CccceEEEEcCCcccHHH-HHHHHHhCCCEEEEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcC-CCcEEEEeeeCC
Q 024116          134 IMGKNAVVIGRSNIVGLP-TSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLK-PGAVVLDVGTCP  211 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~-la~~L~~~ga~V~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk-~g~vviDig~~~  211 (272)
                      .++|+++|+|.|++ |++ +|.+|.++|++|++++.+.....+.+++..+.+.. |.+    ++.+. ...+|+--|+++
T Consensus         5 ~~~~~v~viG~G~s-G~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~-~~~----~~~~~~~d~vv~spgi~~   78 (461)
T PRK00421          5 RRIKRIHFVGIGGI-GMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFI-GHD----AENIKDADVVVYSSAIPD   78 (461)
T ss_pred             CCCCEEEEEEEchh-hHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeC-CCC----HHHCCCCCEEEECCCCCC
Confidence            47899999999998 999 79999999999999987543222224333333321 221    11121 234555555554


Q ss_pred             CCCCCCCCCCCCceEecccchhh-hhh--hceEeccCCCcccHHHHHHHHHHHHHHH
Q 024116          212 VDVSVDPSCEYGYRLMGDVCYEE-AMR--LASVITPVPGGVGPMTVAMLLSNTLDSA  265 (272)
Q Consensus       212 ~~~~~~~~~~~~~k~~Gdvd~~~-~~~--~~~~~tpvpGGvGp~T~amL~~n~v~a~  265 (272)
                      ...........+-++.++.++-. +.+  +.-+   |-|--|.=|+..|+.++++..
T Consensus        79 ~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~---ITGTnGKTTTt~ll~~iL~~~  132 (461)
T PRK00421         79 DNPELVAARELGIPVVRRAEMLAELMRFRTSIA---VAGTHGKTTTTSLLAHVLAEA  132 (461)
T ss_pred             CCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEE---EECCCCHHHHHHHHHHHHHhc
Confidence            31000000001235778887632 221  2333   557788999999999998764

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.40  E-value=0.0057  Score=54.55  Aligned_cols=59  Identities=10%  Similarity=0.135  Sum_probs=45.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-CCH-----------------hhhcCCCcEEEEecCCCc
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-KNP-----------------EQITSEADIVIAAAGVAN  191 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-~~l-----------------~~~l~~ADIVIsa~g~p~  191 (272)
                      ++++|++|+|||+|.+ +.-=+..|++.||.|+|+...- +++                 .+.+..+++||.||+.+.
T Consensus        21 l~~~~~~VLVVGGG~V-A~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~   97 (223)
T PRK05562         21 LLSNKIKVLIIGGGKA-AFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEK   97 (223)
T ss_pred             EECCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHH
Confidence            4567999999999885 7776778889999999996432 111                 245788999999998764

>PLN02688 pyrroline-5-carboxylate reductase

Probab=96.37  E-value=0.0078  Score=54.14  Aligned_cols=68  Identities=13%  Similarity=0.212  Sum_probs=49.4

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC----EEEEE-eCCC--------------CCHhhhcCCCcEEEEecCCCcc----cc
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHA----TVSIV-HALT--------------KNPEQITSEADIVIAAAGVANL----VR  194 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga----~V~v~-~~~t--------------~~l~~~l~~ADIVIsa~g~p~~----i~  194 (272)
                      +|.+||.|.+ |.+++..|.+.|.    +|+++ +|+.              .+..+.++++|+||.++. |..    +.
T Consensus         2 kI~~IG~G~m-G~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~   79 (266)
T PLN02688          2 RVGFIGAGKM-AEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT   79 (266)
T ss_pred             eEEEECCcHH-HHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH
Confidence            6899999886 9999999999887    88888 6642              234566789999999994 432    11


Q ss_pred             --CCCcCCCcEEEEe
Q 024116          195 --GSWLKPGAVVLDV  207 (272)
Q Consensus       195 --~~~vk~g~vviDi  207 (272)
                        ...++++.+||.+
T Consensus        80 ~l~~~~~~~~~iIs~   94 (266)
T PLN02688         80 ELRPLLSKDKLLVSV   94 (266)
T ss_pred             HHHhhcCCCCEEEEe
Confidence              1234666666655

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=96.34  E-value=0.12  Score=49.87  Aligned_cols=158  Identities=16%  Similarity=0.111  Sum_probs=99.4

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEEcCCC--CCHHHHHHHHHhhhcCCCccEEEEcCCC---CCCCCHHHHHhcCCc--cc
Q 024116           21 DSQTYVRNKIKACEEVGIKSIVTEFADG--CTEDEVLNALSNYNQDSSINGILVQLPL---PQHLDEGKILDAVSL--EK   93 (272)
Q Consensus        21 ~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~--~~~~el~~~i~~ln~d~~v~Gi~vq~Pl---p~~~~~~~i~~~i~p--~K   93 (272)
                      .|..=--+-..++.++|..+.++.-...  ...|-+.+.++-|+.-  +|+|.+--|-   ..+-...++.++..-  .+
T Consensus        69 pSTRTR~SFE~A~~~LGg~~i~l~~~~ss~~kGEsl~DTarvLs~y--~D~IviR~~~~~g~~~~~~~ela~~~~~~~~~  146 (395)
T PRK07200         69 NSTRTRFSYASACNLLGLEVQDLDEGKSQIAHGETVRETANMISFM--ADVIGIRDDMYIGKGNAYMREVGAAVDDGYKQ  146 (395)
T ss_pred             CCchhHHHHHHHHHHcCCCEEEcCCccccCCCCCCHHHHHHHHHHh--CCEEEEecCcccccccHHHHHHHHHhhhhccc
Confidence            3433334566889999999988753210  0124577777777764  8899998774   222112222222210  01


Q ss_pred             cc-Cccc-cccccccccCCCCCccccCCHHH-HHHHHHHhCC--CCccceEEEEcC-------CcccHHHHHHHHHhCCC
Q 024116           94 DV-DGFH-PLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGV--EIMGKNAVVIGR-------SNIVGLPTSLLLQRHHA  161 (272)
Q Consensus        94 Dv-dg~~-~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~--~l~gk~v~ViG~-------g~~vG~~la~~L~~~ga  161 (272)
                      +| -..- .+|.+       .+...||=+.+ ++.+.++.|-  .++|++|+++|.       +..|.+.++.+|...|+
T Consensus       147 ~~~~~~pPVINa~-------~~~~HPtQaLaDl~TI~E~~G~~~~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~  219 (395)
T PRK07200        147 GVLPQRPTLVNLQ-------CDIDHPTQSMADLLHLIEHFGGLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGM  219 (395)
T ss_pred             ccccCCCeEEECC-------CCCCCcHHHHHHHHHHHHHhCCCcccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCC
Confidence            11 1122 25541       23467998888 5666666664  389999999864       44678999999999999


Q ss_pred             EEEEEeCC-------------------------CCCHhhhcCCCcEEEEec
Q 024116          162 TVSIVHAL-------------------------TKNPEQITSEADIVIAAA  187 (272)
Q Consensus       162 ~V~v~~~~-------------------------t~~l~~~l~~ADIVIsa~  187 (272)
                      +|++++-.                         +.++.+.++.||+|.+-+
T Consensus       220 ~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~aDvVYtd~  270 (395)
T PRK07200        220 DVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDADIVYPKS  270 (395)
T ss_pred             EEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence            99998633                         146678899999999653

>PRK06398 aldose dehydrogenase; Validated

Probab=96.32  E-value=0.0096  Score=53.06  Aligned_cols=37  Identities=22%  Similarity=0.170  Sum_probs=33.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|.++|++|+++.|+
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~   39 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIK   39 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            4789999999998888999999999999999988765

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.30  E-value=0.0076  Score=59.06  Aligned_cols=113  Identities=13%  Similarity=0.214  Sum_probs=69.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-CCH-----------------hhhcCCCcEEEEecCCCcc-
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-KNP-----------------EQITSEADIVIAAAGVANL-  192 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-~~l-----------------~~~l~~ADIVIsa~g~p~~-  192 (272)
                      ++++||+|+|||.|.+ +.-=+..|++.||.|+|+...- +++                 .+.++.+++||.||+.+.+ 
T Consensus         8 ~~l~~~~vlvvGgG~v-A~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n   86 (457)
T PRK10637          8 CQLRDRDCLLVGGGDV-AERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDAVN   86 (457)
T ss_pred             EEcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHHHh
Confidence            5789999999999885 7766778889999999985431 111                 2457889999999987643 


Q ss_pred             --ccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhh---ceEeccCCCcccHHHHHHHHHHHH
Q 024116          193 --VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRL---ASVITPVPGGVGPMTVAMLLSNTL  262 (272)
Q Consensus       193 --i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~---~~~~tpvpGGvGp~T~amL~~n~v  262 (272)
                        +-.. -+..-+.+++.-+|..              +|+-|.++.++   ..+++  -+|-.|..+..|-+++-
T Consensus        87 ~~i~~~-a~~~~~lvN~~d~~~~--------------~~f~~pa~~~~g~l~iais--T~G~sP~~a~~lr~~ie  144 (457)
T PRK10637         87 QRVSEA-AEARRIFCNVVDAPKA--------------ASFIMPSIIDRSPLMVAVS--SGGTSPVLARLLREKLE  144 (457)
T ss_pred             HHHHHH-HHHcCcEEEECCCccc--------------CeEEEeeEEecCCEEEEEE--CCCCCcHHHHHHHHHHH
Confidence              2111 1222345566645432              12222222221   22333  47888888877655443

>PRK08507 prephenate dehydrogenase; Validated

Probab=96.29  E-value=0.011  Score=53.78  Aligned_cols=70  Identities=19%  Similarity=0.259  Sum_probs=51.8

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC---------------CCHhhhcCCCcEEEEecCCCc---ccc--C
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT---------------KNPEQITSEADIVIAAAGVAN---LVR--G  195 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t---------------~~l~~~l~~ADIVIsa~g~p~---~i~--~  195 (272)
                      ++.|||.|.+ |.+++..|.+.|.  +|++++++.               .+..+. .++|+||.+++...   .+.  .
T Consensus         2 ~I~iIG~G~m-G~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~aD~Vilavp~~~~~~~~~~l~   79 (275)
T PRK08507          2 KIGIIGLGLM-GGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEEL-KKCDVIFLAIPVDAIIEILPKLL   79 (275)
T ss_pred             EEEEEccCHH-HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHH-hcCCEEEEeCcHHHHHHHHHHHh
Confidence            6899999885 9999999999885  788887642               133343 45999999998543   221  1


Q ss_pred             CCcCCCcEEEEeeeC
Q 024116          196 SWLKPGAVVLDVGTC  210 (272)
Q Consensus       196 ~~vk~g~vviDig~~  210 (272)
                      . ++++++|+|+|..
T Consensus        80 ~-l~~~~iv~d~gs~   93 (275)
T PRK08507         80 D-IKENTTIIDLGST   93 (275)
T ss_pred             c-cCCCCEEEECccc
Confidence            2 6789999999875

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.29  E-value=0.0063  Score=53.58  Aligned_cols=39  Identities=26%  Similarity=0.320  Sum_probs=35.0

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++++||+++|.|+++-+|+.++..|.++|++|+++.|+.
T Consensus         5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~   43 (258)
T PRK06949          5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRV   43 (258)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            458899999999988889999999999999999987754

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=96.28  E-value=0.018  Score=53.34  Aligned_cols=141  Identities=16%  Similarity=0.183  Sum_probs=93.0

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCcccccccc
Q 024116           28 NKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIG  104 (272)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~~~~n~g  104 (272)
                      +-..++..+|....|+.= .+.   ..+.+.+.-+=|..-  +|||.+--.  +|.+..++-++       .++-.+|  
T Consensus        61 SFeva~~qlGg~~~~l~~-~~~Qlgr~Esi~DTArVLsr~--~D~I~~R~~--~~~~ve~lA~~-------s~VPViN--  126 (310)
T COG0078          61 SFEVAATQLGGHAIYLGP-GDSQLGRGESIKDTARVLSRM--VDAIMIRGF--SHETLEELAKY-------SGVPVIN--  126 (310)
T ss_pred             hHHHHHHHcCCCeEEeCC-CccccCCCCcHHHHHHHHHhh--hheEEEecc--cHHHHHHHHHh-------CCCceEc--
Confidence            345677888888877642 221   112234444444432  788887554  32222222221       1122222  


Q ss_pred             ccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC---------------
Q 024116          105 NLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL---------------  169 (272)
Q Consensus       105 ~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~---------------  169 (272)
                          | -++.+.||-..|=+--++++.-.++|++++=+|-|+.|+..+....+..|..|+++.-+               
T Consensus       127 ----g-LtD~~HP~Q~LADl~Ti~E~~g~l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~  201 (310)
T COG0078         127 ----G-LTDEFHPCQALADLMTIKEHFGSLKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKEN  201 (310)
T ss_pred             ----c-cccccCcHHHHHHHHHHHHhcCcccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHH
Confidence                2 36778899999955555555555999999999999999999999999999999998643               


Q ss_pred             ----------CCCHhhhcCCCcEEEEec
Q 024116          170 ----------TKNPEQITSEADIVIAAA  187 (272)
Q Consensus       170 ----------t~~l~~~l~~ADIVIsa~  187 (272)
                                +.+..+..+.||+|.|=+
T Consensus       202 a~~~g~~i~~t~d~~eAv~gADvvyTDv  229 (310)
T COG0078         202 AKESGGKITLTEDPEEAVKGADVVYTDV  229 (310)
T ss_pred             HHhcCCeEEEecCHHHHhCCCCEEEecC
Confidence                      257789999999999665

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.28  E-value=0.01  Score=57.33  Aligned_cols=126  Identities=21%  Similarity=0.260  Sum_probs=68.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC---HhhhcCCCcEEEEecCC-CccccCCCcC--CCcEEEE
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---PEQITSEADIVIAAAGV-ANLVRGSWLK--PGAVVLD  206 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~---l~~~l~~ADIVIsa~g~-p~~i~~~~vk--~g~vviD  206 (272)
                      +++||+++|+|.|+ .|++++..|+++|++|++++++...   ..+.++...+-+. .|. +.    +.+.  ...+|.-
T Consensus         2 ~~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~-~~~~~~----~~~~~~~d~vV~s   75 (447)
T PRK02472          2 EYQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVI-CGSHPL----ELLDEDFDLMVKN   75 (447)
T ss_pred             CcCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEE-eCCCCH----HHhcCcCCEEEEC
Confidence            36799999999999 5999999999999999999865421   1122222221111 110 10    0011  1234444


Q ss_pred             eeeCCCCCCCCCCCCCCceEecccchhhhhhhceEeccCCCcccHHHHHHHHHHHHHHH
Q 024116          207 VGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA  265 (272)
Q Consensus       207 ig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~  265 (272)
                      -|+++...........+-+++++.++........ +.-|-|--|.=|+..|+.++++..
T Consensus        76 ~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~-~I~VTGT~GKTTTt~ll~~iL~~~  133 (447)
T PRK02472         76 PGIPYTNPMVEKALEKGIPIITEVELAYLISEAP-IIGITGSNGKTTTTTLIGEMLKAG  133 (447)
T ss_pred             CCCCCCCHHHHHHHHCCCcEEeHHHHHHHhcCCC-EEEEeCCCchHHHHHHHHHHHHHC
Confidence            4444321000000001235667766532111111 223668889999999999988754

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.27  E-value=0.01  Score=54.37  Aligned_cols=72  Identities=18%  Similarity=0.195  Sum_probs=52.4

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------------------------CCHhhhc
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------------------------KNPEQIT  177 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t---------------------------------------~~l~~~l  177 (272)
                      ++|.|||+|-+ |.++|..|+..|.+|++++++.                                       .++++.+
T Consensus         4 ~kIaViGaG~m-G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~   82 (287)
T PRK08293          4 KNVTVAGAGVL-GSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV   82 (287)
T ss_pred             cEEEEECCCHH-HHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence            58999999875 9999999999999999997542                                       2345678


Q ss_pred             CCCcEEEEecCCCc-----ccc--CCCcCCCcEEEEeee
Q 024116          178 SEADIVIAAAGVAN-----LVR--GSWLKPGAVVLDVGT  209 (272)
Q Consensus       178 ~~ADIVIsa~g~p~-----~i~--~~~vk~g~vviDig~  209 (272)
                      ++||+||.|++..-     ++.  ...+++++++.+...
T Consensus        83 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntS  121 (287)
T PRK08293         83 KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSS  121 (287)
T ss_pred             cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcc
Confidence            99999999998431     111  124566777655443

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=96.26  E-value=0.0039  Score=57.95  Aligned_cols=90  Identities=26%  Similarity=0.325  Sum_probs=65.9

Q ss_pred             HHHHHHHHH----------hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------------
Q 024116          121 KGCIELLIR----------SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------  170 (272)
Q Consensus       121 ~g~~~~l~~----------~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------------  170 (272)
                      .+++..+..          .+...++.+++++|.|-+ |-.++..-...|+-|+-..-..                    
T Consensus       139 ~aVi~Aa~a~~rffpm~~TAagtv~pA~vlv~G~Gva-gl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee  217 (356)
T COG3288         139 IAVIGAALAYGRFFPMQITAAGTVSPAKVLVIGAGVA-GLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEE  217 (356)
T ss_pred             HHHHHHHHHhhhcccchhhhcccccchhhhhhhHHHH-HHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccc
Confidence            556666666          345678899999999775 8887777777787776553210                    


Q ss_pred             ------------------CCHhhhcCCCcEEEEec---C--CCccccCCCc---CCCcEEEEeeeCC
Q 024116          171 ------------------KNPEQITSEADIVIAAA---G--VANLVRGSWL---KPGAVVLDVGTCP  211 (272)
Q Consensus       171 ------------------~~l~~~l~~ADIVIsa~---g--~p~~i~~~~v---k~g~vviDig~~~  211 (272)
                                        +-+.+++++.|||||+.   |  .|.+++.+|+   |||++|+|++...
T Consensus       218 ~~gGYAk~ms~~~~~~q~~~~a~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~  284 (356)
T COG3288         218 SAGGYAKEMSEEFIAKQAELVAEQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAET  284 (356)
T ss_pred             cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehhhc
Confidence                              12357899999999877   3  3557899987   8999999998654

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=96.25  E-value=0.007  Score=49.36  Aligned_cols=72  Identities=24%  Similarity=0.284  Sum_probs=46.4

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------CCHhhhcCCCcEEEEecCCCcc------c
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------KNPEQITSEADIVIAAAGVANL------V  193 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t----------------~~l~~~l~~ADIVIsa~g~p~~------i  193 (272)
                      --+|.|||+|. ||..++..|.+.|..|.-+.+++                .++.+.+++||++|-+++-..+      +
T Consensus        10 ~l~I~iIGaGr-VG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~va~~L   88 (127)
T PF10727_consen   10 RLKIGIIGAGR-VGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEVAEQL   88 (127)
T ss_dssp             --EEEEECTSC-CCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHHHHHH
T ss_pred             ccEEEEECCCH-HHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHHHHHH
Confidence            45899999999 59999999999999887775442                2456789999999999984321      2


Q ss_pred             -cCCCcCCCcEEEEee
Q 024116          194 -RGSWLKPGAVVLDVG  208 (272)
Q Consensus       194 -~~~~vk~g~vviDig  208 (272)
                       ....+++|.+|+=+.
T Consensus        89 a~~~~~~~g~iVvHtS  104 (127)
T PF10727_consen   89 AQYGAWRPGQIVVHTS  104 (127)
T ss_dssp             HCC--S-TT-EEEES-
T ss_pred             HHhccCCCCcEEEECC
Confidence             222356788776554

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=96.24  E-value=0.017  Score=54.33  Aligned_cols=93  Identities=14%  Similarity=0.165  Sum_probs=61.6

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC---------------------Hhh
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------------------PEQ  175 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~---------------------l~~  175 (272)
                      +|.....+..+...+..-.|++|+|.|.|. +|..+++++...|++|+++....+.                     +.+
T Consensus       165 ~~~~~ta~~al~~~~~~~~g~~VlV~G~G~-vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~  243 (360)
T PLN02586        165 LCAGITVYSPMKYYGMTEPGKHLGVAGLGG-LGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKA  243 (360)
T ss_pred             hcchHHHHHHHHHhcccCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHh
Confidence            444444455555554444799999999976 5999999999999987765433211                     111


Q ss_pred             hcCCCcEEEEecCCCccc--cCCCcCCCcEEEEeeeC
Q 024116          176 ITSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       176 ~l~~ADIVIsa~g~p~~i--~~~~vk~g~vviDig~~  210 (272)
                      .+..+|+||.++|.+..+  --+.++++-.++.+|..
T Consensus       244 ~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~  280 (360)
T PLN02586        244 AIGTMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLP  280 (360)
T ss_pred             hcCCCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCC
Confidence            222469999999876533  22457888788888854

>PRK06523 short chain dehydrogenase; Provisional

Probab=96.21  E-value=0.012  Score=52.06  Aligned_cols=38  Identities=29%  Similarity=0.317  Sum_probs=34.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~   42 (260)
T PRK06523          5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARS   42 (260)
T ss_pred             cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999998889999999999999999988775

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.20  E-value=0.0091  Score=52.53  Aligned_cols=69  Identities=20%  Similarity=0.250  Sum_probs=49.7

Q ss_pred             eEEEEc-CCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------------CHhhhcCCCcEEEEecCCCc
Q 024116          138 NAVVIG-RSNIVGLPTSLLLQRHHATVSIVHALTK-------------------------NPEQITSEADIVIAAAGVAN  191 (272)
Q Consensus       138 ~v~ViG-~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------------------~l~~~l~~ADIVIsa~g~p~  191 (272)
                      ++.||| .|. +|.+++..|.+.|.+|++.+|+.+                         +..+.++++|+||.+++...
T Consensus         2 kI~IIGG~G~-mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~   80 (219)
T TIGR01915         2 KIAVLGGTGD-QGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH   80 (219)
T ss_pred             EEEEEcCCCH-HHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence            689998 666 599999999999999998877531                         22355788999999998643


Q ss_pred             c---cc--CCCcCCCcEEEEee
Q 024116          192 L---VR--GSWLKPGAVVLDVG  208 (272)
Q Consensus       192 ~---i~--~~~vk~g~vviDig  208 (272)
                      +   +.  ...++ +.+|||+.
T Consensus        81 ~~~~l~~l~~~l~-~~vvI~~~  101 (219)
T TIGR01915        81 VLKTLESLRDELS-GKLVISPV  101 (219)
T ss_pred             HHHHHHHHHHhcc-CCEEEEec
Confidence            2   21  11233 47888884

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.18  E-value=0.025  Score=49.31  Aligned_cols=36  Identities=14%  Similarity=0.206  Sum_probs=31.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~  169 (272)
                      .+++++|+|+|.|+ +|-.++..|...|. ++++++..
T Consensus        18 ~L~~s~VlIiG~gg-lG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          18 RLRSARILLIGLKG-LGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HHHhCcEEEEcCCH-HHHHHHHHHHHcCCCEEEEEECC
Confidence            36789999999999 59999999999996 79999754

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PLN02477 glutamate dehydrogenase

Probab=96.17  E-value=0.012  Score=56.97  Aligned_cols=53  Identities=23%  Similarity=0.318  Sum_probs=44.6

Q ss_pred             ccCCHHHHHHH----HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE-EEeCC
Q 024116          116 IPCTPKGCIEL----LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS-IVHAL  169 (272)
Q Consensus       116 ~p~Ta~g~~~~----l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~-v~~~~  169 (272)
                      .+.|++|+...    +++++.+++|++|+|.|.|. ||+.++.+|.++|++|+ |++++
T Consensus       182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGn-VG~~~A~~L~e~GakVVaVsD~~  239 (410)
T PLN02477        182 EAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGN-VGSWAAQLIHEKGGKIVAVSDIT  239 (410)
T ss_pred             CccchHHHHHHHHHHHHHcCCCccCCEEEEECCCH-HHHHHHHHHHHcCCEEEEEECCC
Confidence            47899886554    45678899999999999988 59999999999999877 77665

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.17  E-value=0.051  Score=52.26  Aligned_cols=123  Identities=21%  Similarity=0.248  Sum_probs=83.1

Q ss_pred             CCCHHHHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhC---------------------------
Q 024116           79 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSG---------------------------  131 (272)
Q Consensus        79 ~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~---------------------------  131 (272)
                      +.|..++.+.|-.++.|.- |..|.|-   |+...|| |-+-.|.++..++++                           
T Consensus       231 g~D~~~V~~gIGlD~RIG~-~fl~aG~---GyGGsCf-PKD~~AL~~~a~~~~~~~~ll~avv~vN~~qk~~~~~~i~~~  305 (414)
T COG1004         231 GADVKQVAEGIGLDPRIGN-HFLNAGF---GYGGSCF-PKDTKALIANAEELGYDPNLLEAVVEVNERRKDKLAEKILNH  305 (414)
T ss_pred             CCCHHHHHHHcCCCchhhH-hhCCCCC---CCCCcCC-cHhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4577888888877777653 4445443   2223344 555555555544433                           


Q ss_pred             CCCccceEEEEcCC---------cccHHHHHHHHHhCCCEEEEEeCC--------------CCCHhhhcCCCcEEEEecC
Q 024116          132 VEIMGKNAVVIGRS---------NIVGLPTSLLLQRHHATVSIVHAL--------------TKNPEQITSEADIVIAAAG  188 (272)
Q Consensus       132 ~~l~gk~v~ViG~g---------~~vG~~la~~L~~~ga~V~v~~~~--------------t~~l~~~l~~ADIVIsa~g  188 (272)
                      ..++||++.|.|-.         .+-...++.+|.++|++|.+.+..              ..++++.++.||++|..|.
T Consensus       306 ~~l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te  385 (414)
T COG1004         306 LGLKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE  385 (414)
T ss_pred             cCCCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc
Confidence            23889999999921         234788999999999999998632              2467899999999999999


Q ss_pred             CCccccCCCc---CCCcEEEE
Q 024116          189 VANLVRGSWL---KPGAVVLD  206 (272)
Q Consensus       189 ~p~~i~~~~v---k~g~vviD  206 (272)
                      +..+-..+|-   -++.+|+|
T Consensus       386 w~ef~~~d~~~~~m~~~~v~D  406 (414)
T COG1004         386 WDEFRDLDFEKLLMKTPVVID  406 (414)
T ss_pred             HHHHhccChhhhhccCCEEEe
Confidence            8777544432   23556777

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.14  E-value=0.0079  Score=52.52  Aligned_cols=36  Identities=25%  Similarity=0.491  Sum_probs=31.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~  169 (272)
                      .+++++|+|+|.|+. |..++..|...|. ++++++..
T Consensus        18 kl~~~~VlviG~Ggl-Gs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        18 RLLNSHVLIIGAGGL-GSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             HhcCCCEEEECCCHH-HHHHHHHHHHcCCCeEEEecCC
Confidence            468999999999995 9999999999996 89998754

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PTZ00117 malate dehydrogenase; Provisional

Probab=96.12  E-value=0.017  Score=53.95  Aligned_cols=55  Identities=24%  Similarity=0.449  Sum_probs=44.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC--------------------------CCHhhhcCCCcEEEEe
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT--------------------------KNPEQITSEADIVIAA  186 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t--------------------------~~l~~~l~~ADIVIsa  186 (272)
                      ++.+||.|||+|. +|..++..|+..| +++.+++.+.                          .++ +.+++||+||.+
T Consensus         3 ~~~~KI~IIGaG~-vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~-~~l~~ADiVVit   80 (319)
T PTZ00117          3 VKRKKISMIGAGQ-IGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNY-EDIKDSDVVVIT   80 (319)
T ss_pred             CCCcEEEEECCCH-HHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCH-HHhCCCCEEEEC
Confidence            4678999999977 5999999999888 6888887531                          233 478999999999


Q ss_pred             cCCC
Q 024116          187 AGVA  190 (272)
Q Consensus       187 ~g~p  190 (272)
                      .|.|
T Consensus        81 ag~~   84 (319)
T PTZ00117         81 AGVQ   84 (319)
T ss_pred             CCCC
Confidence            9754

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.11  E-value=0.016  Score=56.67  Aligned_cols=35  Identities=23%  Similarity=0.272  Sum_probs=32.3

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +.+|+|+|+|.|+. |++++.+|.++|++|+++++.
T Consensus        12 ~~~~~i~v~G~G~s-G~a~a~~L~~~G~~V~~~D~~   46 (458)
T PRK01710         12 IKNKKVAVVGIGVS-NIPLIKFLVKLGAKVTAFDKK   46 (458)
T ss_pred             hcCCeEEEEcccHH-HHHHHHHHHHCCCEEEEECCC
Confidence            46899999999997 999999999999999999865

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.09  E-value=0.016  Score=51.36  Aligned_cols=48  Identities=17%  Similarity=0.162  Sum_probs=39.1

Q ss_pred             HHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC
Q 024116          122 GCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT  170 (272)
Q Consensus       122 g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t  170 (272)
                      ++.+.+++.+.+++|++|+|.|.|. ||+.++..|.++|+ .|.+++++.
T Consensus         9 ~~~~~~~~~~~~l~g~~vaIqGfGn-VG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211           9 AMKAAMKHLGDSLEGLTVAVQGLGN-VGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             HHHHHHHHcCCCcCCCEEEEECCCH-HHHHHHHHHHHcCCEEEEEEcCCC
Confidence            3445566777899999999999988 59999999999987 577776553

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.09  E-value=0.0096  Score=52.98  Aligned_cols=52  Identities=23%  Similarity=0.338  Sum_probs=42.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-----------------------CCHhhh-cCCCcEEEEecCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------------------KNPEQI-TSEADIVIAAAGV  189 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-----------------------~~l~~~-l~~ADIVIsa~g~  189 (272)
                      ++++|+|.|.. |..+|..|.++|.+|++..++.                       .-|+++ +.+||++|.+||.
T Consensus         1 m~iiIiG~G~v-G~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~   76 (225)
T COG0569           1 MKIIIIGAGRV-GRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN   76 (225)
T ss_pred             CEEEEECCcHH-HHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence            57999999995 9999999999999999998652                       123343 7889999999986

>PRK12367 short chain dehydrogenase; Provisional

Probab=96.08  E-value=0.013  Score=52.36  Aligned_cols=38  Identities=18%  Similarity=0.154  Sum_probs=33.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus        11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~   48 (245)
T PRK12367         11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK   48 (245)
T ss_pred             hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence            46899999999988889999999999999998877643

>PRK09072 short chain dehydrogenase; Provisional

Probab=96.07  E-value=0.0095  Score=52.93  Aligned_cols=38  Identities=18%  Similarity=0.211  Sum_probs=34.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++++++++|.|+++.+|+.++..|+++|++|+++.|+.
T Consensus         2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~   39 (263)
T PRK09072          2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNA   39 (263)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence            46899999999988899999999999999999998764

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.05  E-value=0.015  Score=50.47  Aligned_cols=57  Identities=26%  Similarity=0.353  Sum_probs=44.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------CH----h---hhcCCCcEEEEecCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NP----E---QITSEADIVIAAAGV  189 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~------------~l----~---~~l~~ADIVIsa~g~  189 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+..            ++    .   +.....|++|...|.
T Consensus         2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ag~   77 (235)
T PRK06550          2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPDLSGNFHFLQLDLSDDLEPLFDWVPSVDILCNTAGI   77 (235)
T ss_pred             CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccccCCcEEEEECChHHHHHHHHHhhCCCCEEEECCCC
Confidence            478999999999888999999999999999998877531            11    1   123456888877773

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=96.05  E-value=0.011  Score=51.70  Aligned_cols=36  Identities=14%  Similarity=0.203  Sum_probs=31.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~  169 (272)
                      .|+.++|+|+|.|+. |..++.+|++.|. ++++++.+
T Consensus        18 ~L~~~~V~IvG~Ggl-Gs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        18 KLEQATVAICGLGGL-GSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             HHhCCcEEEECcCHH-HHHHHHHHHHcCCCEEEEECCC
Confidence            467899999999996 9999999999997 79998754

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.04  E-value=0.018  Score=53.81  Aligned_cols=55  Identities=20%  Similarity=0.299  Sum_probs=44.4

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCCC-----------------------CHhhhcCCCcEEEEecCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALTK-----------------------NPEQITSEADIVIAAAGV  189 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t~-----------------------~l~~~l~~ADIVIsa~g~  189 (272)
                      +++||.|||+|. ||.+++..|+.+|.  ++.+++.+.+                       +-.+.+++||+||.+.|.
T Consensus         5 ~~~ki~iiGaG~-vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~   83 (315)
T PRK00066          5 QHNKVVLVGDGA-VGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA   83 (315)
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence            678999999977 69999999998885  6888876421                       124678999999999996


Q ss_pred             C
Q 024116          190 A  190 (272)
Q Consensus       190 p  190 (272)
                      |
T Consensus        84 ~   84 (315)
T PRK00066         84 P   84 (315)
T ss_pred             C
Confidence            5

>PLN02712 arogenate dehydrogenase

Probab=96.02  E-value=0.012  Score=60.39  Aligned_cols=76  Identities=17%  Similarity=0.230  Sum_probs=56.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhc-CCCcEEEEecCCCc---ccc--
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQIT-SEADIVIAAAGVAN---LVR--  194 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l-~~ADIVIsa~g~p~---~i~--  194 (272)
                      -+-+++.|||.|.+ |..++..|.+.|.+|++++++.             .++.+.+ ++||+||.+++...   ++.  
T Consensus        50 ~~~~kIgIIG~G~m-G~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l  128 (667)
T PLN02712         50 TTQLKIAIIGFGNY-GQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVLKSL  128 (667)
T ss_pred             CCCCEEEEEccCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhh
Confidence            34578999999885 9999999999999999887752             1233434 46999999998422   232  


Q ss_pred             -CCCcCCCcEEEEeeeC
Q 024116          195 -GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       195 -~~~vk~g~vviDig~~  210 (272)
                       ...++++++|+|++.-
T Consensus       129 ~~~~l~~g~iVvDv~Sv  145 (667)
T PLN02712        129 PLQRLKRNTLFVDVLSV  145 (667)
T ss_pred             hhhcCCCCeEEEECCCC
Confidence             2346889999999843

>PRK08223 hypothetical protein; Validated

Probab=96.02  E-value=0.013  Score=54.13  Aligned_cols=35  Identities=17%  Similarity=0.205  Sum_probs=31.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  168 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~  168 (272)
                      .|++++|+|+|.|+. |-+++.+|+..|. ++++++.
T Consensus        24 kL~~s~VlIvG~GGL-Gs~va~~LA~aGVG~i~lvD~   59 (287)
T PRK08223         24 RLRNSRVAIAGLGGV-GGIHLLTLARLGIGKFTIADF   59 (287)
T ss_pred             HHhcCCEEEECCCHH-HHHHHHHHHHhCCCeEEEEeC
Confidence            468999999999995 9999999999996 8888864

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=96.01  E-value=0.0066  Score=53.62  Aligned_cols=38  Identities=24%  Similarity=0.270  Sum_probs=34.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|.+.+|+.
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~   44 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP   44 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            57899999999988889999999999999999988764

>PRK12828 short chain dehydrogenase; Provisional

Probab=96.00  E-value=0.0094  Score=51.48  Aligned_cols=38  Identities=21%  Similarity=0.251  Sum_probs=34.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .++||+++|.|+++.+|+.++..|+++|++|+++.|+.
T Consensus         4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~   41 (239)
T PRK12828          4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGA   41 (239)
T ss_pred             CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCCh
Confidence            46799999999999999999999999999999998854

>PRK14031 glutamate dehydrogenase; Provisional

Probab=96.00  E-value=0.016  Score=56.73  Aligned_cols=51  Identities=25%  Similarity=0.230  Sum_probs=43.3

Q ss_pred             cccCCHHHHHHH----HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEE
Q 024116          115 FIPCTPKGCIEL----LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV  166 (272)
Q Consensus       115 ~~p~Ta~g~~~~----l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~  166 (272)
                      -.++|.+|++..    +++.+.+++||+|+|.|.|. ||..++..|.+.|++|+.+
T Consensus       203 r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGN-VG~~aA~~L~e~GAkVVaV  257 (444)
T PRK14031        203 RPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGN-VAQYTAEKVLELGGKVVTM  257 (444)
T ss_pred             CCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEE
Confidence            347899986554    45678899999999999988 5999999999999998874

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.99  E-value=0.0097  Score=53.50  Aligned_cols=36  Identities=11%  Similarity=0.266  Sum_probs=31.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~  169 (272)
                      .+++++|+|+|.|+. |..++.+|+..|. ++++++..
T Consensus        21 ~L~~~~VlvvG~Ggl-Gs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        21 ALKASRVLIVGLGGL-GCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             HHhCCcEEEECcCHH-HHHHHHHHHHcCCCEEEEEeCC
Confidence            367899999999996 9999999999995 88888643

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.99  E-value=0.0061  Score=54.13  Aligned_cols=34  Identities=18%  Similarity=0.412  Sum_probs=30.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEe
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVH  167 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~  167 (272)
                      .+++++|+|+|.|+. |..++..|...|. ++++++
T Consensus        18 ~L~~~~VlivG~Ggl-Gs~va~~La~~Gvg~i~lvD   52 (228)
T cd00757          18 KLKNARVLVVGAGGL-GSPAAEYLAAAGVGKLGLVD   52 (228)
T ss_pred             HHhCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEc
Confidence            467899999999995 9999999999996 788885

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.99  E-value=0.012  Score=57.96  Aligned_cols=35  Identities=20%  Similarity=0.214  Sum_probs=32.0

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +.|++|+|+|.|.. |++++.+|..+|++|+++++.
T Consensus        10 ~~~~~v~V~G~G~s-G~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         10 LPGAPVLVAGAGVT-GRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             cCCCeEEEEcCCHH-HHHHHHHHHHCCCEEEEEcCC
Confidence            37899999999997 999999999999999999865

>PRK08862 short chain dehydrogenase; Provisional

Probab=95.97  E-value=0.0079  Score=53.00  Aligned_cols=39  Identities=15%  Similarity=0.193  Sum_probs=35.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK  171 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~  171 (272)
                      +++||+++|.|+|.-+|++++..|+++|++|.++.|+.+
T Consensus         2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (227)
T PRK08862          2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQS   40 (227)
T ss_pred             CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            578999999999998999999999999999999987653

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.97  E-value=0.0092  Score=51.53  Aligned_cols=53  Identities=26%  Similarity=0.295  Sum_probs=35.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------------------------CCHhhhcCCCcE
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------------KNPEQITSEADI  182 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t----------------------------------~~l~~~l~~ADI  182 (272)
                      +||.|+|.|- ||-++|..|++.|.+|+-++.+.                                  .+..+.+++||+
T Consensus         1 M~I~ViGlGy-vGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv   79 (185)
T PF03721_consen    1 MKIAVIGLGY-VGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADV   79 (185)
T ss_dssp             -EEEEE--ST-THHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SE
T ss_pred             CEEEEECCCc-chHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccce
Confidence            4899999988 59999999999999999997541                                  233456788888


Q ss_pred             EEEecCCC
Q 024116          183 VIAAAGVA  190 (272)
Q Consensus       183 VIsa~g~p  190 (272)
                      +|-+++-|
T Consensus        80 ~~I~VpTP   87 (185)
T PF03721_consen   80 VFICVPTP   87 (185)
T ss_dssp             EEE----E
T ss_pred             EEEecCCC
Confidence            88777755

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.96  E-value=0.019  Score=56.17  Aligned_cols=127  Identities=20%  Similarity=0.235  Sum_probs=70.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH--hhhcCCCcEEEEecCCCccccCCCcCC-CcEEEEeeeC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP--EQITSEADIVIAAAGVANLVRGSWLKP-GAVVLDVGTC  210 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l--~~~l~~ADIVIsa~g~p~~i~~~~vk~-g~vviDig~~  210 (272)
                      +.+|+|+|+|-|.. |++++..|.++|+.|++++.+....  ........-|=...|. +..  ++... ..+|..=|++
T Consensus         5 ~~~~kv~V~GLG~s-G~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~-~~~--~~~~~~d~vV~SPGi~   80 (448)
T COG0771           5 FQGKKVLVLGLGKS-GLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGS-HDD--EDLAEFDLVVKSPGIP   80 (448)
T ss_pred             ccCCEEEEEecccc-cHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCc-cch--hccccCCEEEECCCCC
Confidence            45999999999998 9999999999999999998554220  0000000110011111 011  22222 3344444444


Q ss_pred             CCCCCCCCCCCCCceEecccchhhhhh--hceEeccCCCcccHHHHHHHHHHHHHHHH
Q 024116          211 PVDVSVDPSCEYGYRLMGDVCYEEAMR--LASVITPVPGGVGPMTVAMLLSNTLDSAK  266 (272)
Q Consensus       211 ~~~~~~~~~~~~~~k~~Gdvd~~~~~~--~~~~~tpvpGGvGp~T~amL~~n~v~a~~  266 (272)
                      +....+......+-++.||+..-. ..  .+-++ -+-|-=|.-|+.-|+.+++++.-
T Consensus        81 ~~~p~v~~A~~~gi~i~~dieL~~-r~~~~~p~v-aITGTNGKTTTTsli~~~l~~~G  136 (448)
T COG0771          81 PTHPLVEAAKAAGIEIIGDIELFY-RLSGEAPIV-AITGTNGKTTTTSLIAHLLKAAG  136 (448)
T ss_pred             CCCHHHHHHHHcCCcEEeHHHHHH-HhcCCCCEE-EEECCCchHHHHHHHHHHHHhcC
Confidence            432000000011346889887533 21  12222 24466679999999999988763

>PRK05866 short chain dehydrogenase; Provisional

Probab=95.85  E-value=0.015  Score=53.10  Aligned_cols=40  Identities=28%  Similarity=0.335  Sum_probs=35.4

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ...++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus        35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~   74 (293)
T PRK05866         35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRE   74 (293)
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4567899999999988889999999999999999998764

>PLN02858 fructose-bisphosphate aldolase

Probab=95.83  E-value=0.013  Score=64.56  Aligned_cols=75  Identities=17%  Similarity=0.187  Sum_probs=60.1

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCcc----c-cC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL----V-RG  195 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~~----i-~~  195 (272)
                      ..++|-+||-|.+ |.+++..|++.|.+|++.+++.              .+..+..++||+||+.++.+.-    + ..
T Consensus         3 ~~~~IGfIGLG~M-G~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~   81 (1378)
T PLN02858          3 SAGVVGFVGLDSL-SFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGD   81 (1378)
T ss_pred             CCCeEEEEchhHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhch
Confidence            4678999999986 9999999999999999999873              3567888999999999986542    1 11


Q ss_pred             ----CCcCCCcEEEEeeeC
Q 024116          196 ----SWLKPGAVVLDVGTC  210 (272)
Q Consensus       196 ----~~vk~g~vviDig~~  210 (272)
                          +.+++|.++||+++.
T Consensus        82 ~g~~~~l~~g~iivd~STi  100 (1378)
T PLN02858         82 EGAAKGLQKGAVILIRSTI  100 (1378)
T ss_pred             hhHHhcCCCcCEEEECCCC
Confidence                134778999998855

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=95.83  E-value=0.0092  Score=52.62  Aligned_cols=39  Identities=21%  Similarity=0.225  Sum_probs=35.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ..++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~   45 (256)
T PRK06124          7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNA   45 (256)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            457899999999999999999999999999999998764

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.82  E-value=0.075  Score=52.50  Aligned_cols=77  Identities=17%  Similarity=0.137  Sum_probs=55.0

Q ss_pred             CCCccceEEEEcCC---------cccHHHHHHHHHhCCCEEEEEeCCCC-------------------------------
Q 024116          132 VEIMGKNAVVIGRS---------NIVGLPTSLLLQRHHATVSIVHALTK-------------------------------  171 (272)
Q Consensus       132 ~~l~gk~v~ViG~g---------~~vG~~la~~L~~~ga~V~v~~~~t~-------------------------------  171 (272)
                      -+++|++|+|+|.+         +.-...++..|.++|++|.+.+-.-.                               
T Consensus       320 ~~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (473)
T PLN02353        320 NTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQ  399 (473)
T ss_pred             cccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccc
Confidence            36899999999932         22378899999999999998864310                               


Q ss_pred             -----CHhhhcCCCcEEEEecCCCcc--ccC----CCcCCCcEEEEee
Q 024116          172 -----NPEQITSEADIVIAAAGVANL--VRG----SWLKPGAVVLDVG  208 (272)
Q Consensus       172 -----~l~~~l~~ADIVIsa~g~p~~--i~~----~~vk~g~vviDig  208 (272)
                           ++.+.+++||+||.+|..+.+  ++.    +.+++..+|+|.-
T Consensus       400 ~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~r  447 (473)
T PLN02353        400 VSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGR  447 (473)
T ss_pred             eeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECC
Confidence                 124678999999999998875  331    1233445788943

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.82  E-value=0.014  Score=53.62  Aligned_cols=72  Identities=19%  Similarity=0.234  Sum_probs=51.4

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH-------------------------------------hhhcCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP-------------------------------------EQITSE  179 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l-------------------------------------~~~l~~  179 (272)
                      ++|.|||.|.+ |.+++..|+..|.+|++++++...+                                     .+.+++
T Consensus         5 ~~V~vIG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   83 (295)
T PLN02545          5 KKVGVVGAGQM-GSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRD   83 (295)
T ss_pred             CEEEEECCCHH-HHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCC
Confidence            68999999886 9999999999999999998653111                                     145788


Q ss_pred             CcEEEEecCC-Cc----ccc--CCCcCCCcEEE-Eeee
Q 024116          180 ADIVIAAAGV-AN----LVR--GSWLKPGAVVL-DVGT  209 (272)
Q Consensus       180 ADIVIsa~g~-p~----~i~--~~~vk~g~vvi-Dig~  209 (272)
                      ||+||.++.- |.    ++.  .+.++++++++ +.+.
T Consensus        84 aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~  121 (295)
T PLN02545         84 ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSS  121 (295)
T ss_pred             CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence            9999999873 32    111  13456776664 5443

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.82  E-value=0.01  Score=51.80  Aligned_cols=38  Identities=24%  Similarity=0.245  Sum_probs=34.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++++|+++|+|+++.+|+.++..|+++|++|++..|+.
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~   39 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNE   39 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46899999999988899999999999999999998865

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.82  E-value=0.02  Score=52.82  Aligned_cols=53  Identities=25%  Similarity=0.359  Sum_probs=43.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------------------CCHhhhcCCCcEE
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------------------KNPEQITSEADIV  183 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t---------------------------------~~l~~~l~~ADIV  183 (272)
                      ++|.|||.|.+ |.+++..|++.|.+|++++++.                                 .++.+.+++||+|
T Consensus         5 ~~I~vIGaG~m-G~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlV   83 (311)
T PRK06130          5 QNLAIIGAGTM-GSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLV   83 (311)
T ss_pred             cEEEEECCCHH-HHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEE
Confidence            68999999885 9999999999999999997532                                 2334567899999


Q ss_pred             EEecCCC
Q 024116          184 IAAAGVA  190 (272)
Q Consensus       184 Isa~g~p  190 (272)
                      |.++...
T Consensus        84 i~av~~~   90 (311)
T PRK06130         84 IEAVPEK   90 (311)
T ss_pred             EEeccCc
Confidence            9998743

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.81  E-value=0.014  Score=55.05  Aligned_cols=36  Identities=19%  Similarity=0.325  Sum_probs=31.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~  169 (272)
                      .+++++|+|||.|+. |.+++.+|++.|. ++++++++
T Consensus        21 ~L~~~~VlIiG~Ggl-Gs~va~~La~aGvg~i~lvD~D   57 (338)
T PRK12475         21 KIREKHVLIVGAGAL-GAANAEALVRAGIGKLTIADRD   57 (338)
T ss_pred             hhcCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEcCC
Confidence            468899999999995 9999999999996 88988754

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=95.79  E-value=0.023  Score=51.42  Aligned_cols=53  Identities=28%  Similarity=0.362  Sum_probs=42.1

Q ss_pred             EEEEcCCcccHHHHHHHHHhCC----CEEEEEeCC-------------------------CCCHhhhcCCCcEEEEecCC
Q 024116          139 AVVIGRSNIVGLPTSLLLQRHH----ATVSIVHAL-------------------------TKNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       139 v~ViG~g~~vG~~la~~L~~~g----a~V~v~~~~-------------------------t~~l~~~l~~ADIVIsa~g~  189 (272)
                      ++|||+|+.+|..++..|+..|    .++++.+.+                         +.++++.+++||+||.+.|.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            5799996678999999998888    578888643                         13457889999999999886


Q ss_pred             Cc
Q 024116          190 AN  191 (272)
Q Consensus       190 p~  191 (272)
                      |.
T Consensus        81 ~~   82 (263)
T cd00650          81 GR   82 (263)
T ss_pred             CC
Confidence            43

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK07680 late competence protein ComER; Validated

Probab=95.78  E-value=0.017  Score=52.34  Aligned_cols=71  Identities=17%  Similarity=0.282  Sum_probs=51.4

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC----CEEEEEeCCC----------------CCHhhhcCCCcEEEEecCCCc---ccc
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHH----ATVSIVHALT----------------KNPEQITSEADIVIAAAGVAN---LVR  194 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~g----a~V~v~~~~t----------------~~l~~~l~~ADIVIsa~g~p~---~i~  194 (272)
                      ++.|||.|.+ |.+++..|.+.|    ..|++++|+.                .+..+.++++|+||.++....   .++
T Consensus         2 ~I~iIG~G~m-G~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~~~~vl~   80 (273)
T PRK07680          2 NIGFIGTGNM-GTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLDIYPLLQ   80 (273)
T ss_pred             EEEEECccHH-HHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHHHHHHHH
Confidence            5899999885 999999999888    3789998752                234456789999999985221   121


Q ss_pred             --CCCcCCCcEEEEeee
Q 024116          195 --GSWLKPGAVVLDVGT  209 (272)
Q Consensus       195 --~~~vk~g~vviDig~  209 (272)
                        ...++++.+|+++.-
T Consensus        81 ~l~~~l~~~~~iis~~a   97 (273)
T PRK07680         81 KLAPHLTDEHCLVSITS   97 (273)
T ss_pred             HHHhhcCCCCEEEEECC
Confidence              124566788888873

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=95.78  E-value=0.021  Score=55.28  Aligned_cols=40  Identities=23%  Similarity=0.299  Sum_probs=35.4

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ...++||+++|.|+++-+|++++..|.++|++|+++.|+.
T Consensus       173 a~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~  212 (406)
T PRK07424        173 ALSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNS  212 (406)
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3467899999999988899999999999999999887654

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=95.78  E-value=0.021  Score=53.77  Aligned_cols=171  Identities=19%  Similarity=0.256  Sum_probs=107.7

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhc-CCcccccCcc--
Q 024116           22 SQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDA-VSLEKDVDGF--   98 (272)
Q Consensus        22 s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~-i~p~KDvdg~--   98 (272)
                      ++.|-+.-.+.+++.|++.+.+.   +.+.+|+...+      .+.|+++|..--+  ++ .+++++ -...|=|...  
T Consensus        12 ~e~~~~~~~~~l~~~g~~v~~~~---~~~~eel~~~i------~~~~aviVrs~tk--vt-advl~aa~~~lkvVgrag~   79 (406)
T KOG0068|consen   12 AESLDQACIEILKDNGYQVEFKK---NLSLEELIEKI------KDCDALIVRSKTK--VT-ADVLEAAAGGLKVVGRAGI   79 (406)
T ss_pred             ecccchHHHHHHHhcCceEEEec---cCCHHHHHHHh------ccCCEEEEEeCCe--ec-HHHHHhhcCCeEEEEeccc
Confidence            34566667788899998887554   33556776666      4578999987633  44 456663 3335544432  


Q ss_pred             cccc--c------cccccCCCCCccccCCHHHHHHH-------H-------------------HHhCCCCccceEEEEcC
Q 024116           99 HPLN--I------GNLAMRGREPLFIPCTPKGCIEL-------L-------------------IRSGVEIMGKNAVVIGR  144 (272)
Q Consensus        99 ~~~n--~------g~l~~~~~~~~~~p~Ta~g~~~~-------l-------------------~~~~~~l~gk~v~ViG~  144 (272)
                      ..-|  +      |-+..  +.|.+   .+.++.|+       |                   +..+.++.||+.-|+|.
T Consensus        80 G~dNVDL~AAte~gi~Vv--n~P~~---Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~  154 (406)
T KOG0068|consen   80 GVDNVDLKAATENGILVV--NTPTA---NSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGL  154 (406)
T ss_pred             CccccChhhHHhCCeEEE--eCCCC---ChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeec
Confidence            1111  1      11111  12222   12222221       1                   12457889999999999


Q ss_pred             CcccHHHHHHHHHhCCCEEEEEeCCC------------CCHhhhcCCCcEEEEecC-CC---ccccCCC---cCCCcEEE
Q 024116          145 SNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAG-VA---NLVRGSW---LKPGAVVL  205 (272)
Q Consensus       145 g~~vG~~la~~L~~~ga~V~v~~~~t------------~~l~~~l~~ADIVIsa~g-~p---~~i~~~~---vk~g~vvi  205 (272)
                      |.+ |+-++..+...|..|.-.+--+            -+++|.+..||+|-.-++ .|   ++++.+-   .|+|..||
T Consensus       155 GrI-GseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriI  233 (406)
T KOG0068|consen  155 GRI-GSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRII  233 (406)
T ss_pred             ccc-hHHHHHHHHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEE
Confidence            996 9999999999998877776433            257899999999876555 23   3565553   48899998


Q ss_pred             EeeeC
Q 024116          206 DVGTC  210 (272)
Q Consensus       206 Dig~~  210 (272)
                      +++--
T Consensus       234 N~aRG  238 (406)
T KOG0068|consen  234 NVARG  238 (406)
T ss_pred             EecCC
Confidence            87643

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=95.78  E-value=0.03  Score=52.47  Aligned_cols=56  Identities=23%  Similarity=0.386  Sum_probs=44.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC--------------------------CCHhhhcCCCcEEEEe
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT--------------------------KNPEQITSEADIVIAA  186 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t--------------------------~~l~~~l~~ADIVIsa  186 (272)
                      ++.+||.|||+|. +|..++..++..| +++.+.+.+.                          .+ .+.+++||+||.+
T Consensus         4 ~~~~KI~IIGaG~-vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d-~~~l~~aDiVI~t   81 (321)
T PTZ00082          4 IKRRKISLIGSGN-IGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNN-YEDIAGSDVVIVT   81 (321)
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCC-HHHhCCCCEEEEC
Confidence            3558999999977 5999999999888 4888887532                          23 3678999999999


Q ss_pred             cCCCc
Q 024116          187 AGVAN  191 (272)
Q Consensus       187 ~g~p~  191 (272)
                      .|.|.
T Consensus        82 ag~~~   86 (321)
T PTZ00082         82 AGLTK   86 (321)
T ss_pred             CCCCC
Confidence            98653

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.76  E-value=0.035  Score=51.56  Aligned_cols=86  Identities=15%  Similarity=0.191  Sum_probs=58.9

Q ss_pred             HHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHhhhcC---CC
Q 024116          124 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPEQITS---EA  180 (272)
Q Consensus       124 ~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t-------------------~~l~~~l~---~A  180 (272)
                      +..+++.+. ..|++|+|.|+|. +|..+++++...|+ .|+++.+..                   .++.+.++   ..
T Consensus       159 ~~al~~~~~-~~g~~VlV~G~G~-vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~  236 (343)
T PRK09880        159 IHAAHQAGD-LQGKRVFVSGVGP-IGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYF  236 (343)
T ss_pred             HHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCC
Confidence            344544433 3799999999865 69999999999998 576665431                   12222222   27


Q ss_pred             cEEEEecCCCccc--cCCCcCCCcEEEEeeeCC
Q 024116          181 DIVIAAAGVANLV--RGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       181 DIVIsa~g~p~~i--~~~~vk~g~vviDig~~~  211 (272)
                      |+||.++|.+..+  --+.++++-.++.+|...
T Consensus       237 D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~  269 (343)
T PRK09880        237 DVSFEVSGHPSSINTCLEVTRAKGVMVQVGMGG  269 (343)
T ss_pred             CEEEECCCCHHHHHHHHHHhhcCCEEEEEccCC
Confidence            9999999986533  234678888888988643

>PRK08339 short chain dehydrogenase; Provisional

Probab=95.75  E-value=0.013  Score=52.46  Aligned_cols=38  Identities=24%  Similarity=0.322  Sum_probs=34.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||.++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~   41 (263)
T PRK08339          4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRN   41 (263)
T ss_pred             cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999998778999999999999999998875

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=95.74  E-value=0.017  Score=50.59  Aligned_cols=37  Identities=22%  Similarity=0.179  Sum_probs=33.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~   38 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRS   38 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCc
Confidence            5789999999998888999999999999999888764

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=95.74  E-value=0.026  Score=50.11  Aligned_cols=37  Identities=27%  Similarity=0.258  Sum_probs=33.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~   42 (266)
T PRK06171          6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIH   42 (266)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999998888999999999999999888765

>PRK06172 short chain dehydrogenase; Provisional

Probab=95.73  E-value=0.011  Score=52.08  Aligned_cols=38  Identities=29%  Similarity=0.354  Sum_probs=34.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++.+|+.++..|+++|++|.++.|+.
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~   41 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDA   41 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            47899999999998899999999999999999988764

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=95.71  E-value=0.02  Score=56.73  Aligned_cols=73  Identities=19%  Similarity=0.308  Sum_probs=55.4

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------CHhhhcC---CCcEEEEecCCCccc
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITS---EADIVIAAAGVANLV  193 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~---------------------~l~~~l~---~ADIVIsa~g~p~~i  193 (272)
                      +|-+||-|.+ |++++..|++.|.+|+++||+..                     ++++.++   ++|+||+.+..+..+
T Consensus         8 ~IG~IGLG~M-G~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV   86 (493)
T PLN02350          8 RIGLAGLAVM-GQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV   86 (493)
T ss_pred             CEEEEeeHHH-HHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence            6899999886 99999999999999999998731                     2223343   499999998865422


Q ss_pred             ----c--CCCcCCCcEEEEeeeCC
Q 024116          194 ----R--GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       194 ----~--~~~vk~g~vviDig~~~  211 (272)
                          +  ...+++|.++||.+...
T Consensus        87 ~~Vi~gl~~~l~~G~iiID~sT~~  110 (493)
T PLN02350         87 DQTIKALSEYMEPGDCIIDGGNEW  110 (493)
T ss_pred             HHHHHHHHhhcCCCCEEEECCCCC
Confidence                1  12467899999998763

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=95.69  E-value=0.011  Score=52.08  Aligned_cols=38  Identities=21%  Similarity=0.278  Sum_probs=34.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~   43 (254)
T PRK08085          6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITA   43 (254)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCH
Confidence            57899999999998899999999999999999988763

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.69  E-value=0.015  Score=47.18  Aligned_cols=34  Identities=21%  Similarity=0.346  Sum_probs=29.1

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~  169 (272)
                      +.++|+|+|.|+. |..++..|+..|. .+++++..
T Consensus         1 r~~~v~iiG~G~v-Gs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    1 RNKRVLIIGAGGV-GSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             HT-EEEEESTSHH-HHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCCEEEEECcCHH-HHHHHHHHHHhCCCceeecCCc
Confidence            4689999999995 9999999999997 89999754

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=95.69  E-value=0.015  Score=55.84  Aligned_cols=76  Identities=17%  Similarity=0.201  Sum_probs=55.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhC-CCEEEEEeCCC---------------------CCHh-hhcCCCcEEEEecCCC-
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALT---------------------KNPE-QITSEADIVIAAAGVA-  190 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~-ga~V~v~~~~t---------------------~~l~-~~l~~ADIVIsa~g~p-  190 (272)
                      .-++|.|+|++|.+|+.+..+|.++ +.+++.+.+..                     .+++ +.++++|+||.|+|.. 
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~~  116 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHGT  116 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHHH
Confidence            5579999999999999999999988 57877766431                     0011 1247899999999852 


Q ss_pred             --ccccCCCcCCCcEEEEeeeCCC
Q 024116          191 --NLVRGSWLKPGAVVLDVGTCPV  212 (272)
Q Consensus       191 --~~i~~~~vk~g~vviDig~~~~  212 (272)
                        ++++. + +.|+.|||++....
T Consensus       117 s~~i~~~-~-~~g~~VIDlSs~fR  138 (381)
T PLN02968        117 TQEIIKA-L-PKDLKIVDLSADFR  138 (381)
T ss_pred             HHHHHHH-H-hCCCEEEEcCchhc
Confidence              23333 3 57899999987653

>PRK07062 short chain dehydrogenase; Provisional

Probab=95.68  E-value=0.013  Score=52.02  Aligned_cols=39  Identities=36%  Similarity=0.421  Sum_probs=35.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||.++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~   42 (265)
T PRK07062          4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDE   42 (265)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence            468899999999988899999999999999999988763

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=95.67  E-value=0.024  Score=55.86  Aligned_cols=73  Identities=16%  Similarity=0.245  Sum_probs=53.4

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------CHhhhcC---CCcEEEEecCCCcc-
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQITS---EADIVIAAAGVANL-  192 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~--------------------~l~~~l~---~ADIVIsa~g~p~~-  192 (272)
                      .++.|||.|.+ |.++|..|+++|.+|++.+|+.+                    ++++.++   ++|+||..+..+.. 
T Consensus         2 ~~IgvIGLG~M-G~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v   80 (470)
T PTZ00142          2 SDIGLIGLAVM-GQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAV   80 (470)
T ss_pred             CEEEEEeEhHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHH
Confidence            36899999886 99999999999999999998632                    2334443   47988876654331 


Q ss_pred             ---cc--CCCcCCCcEEEEeeeC
Q 024116          193 ---VR--GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       193 ---i~--~~~vk~g~vviDig~~  210 (272)
                         +.  ...+++|.+|||.+..
T Consensus        81 ~~vi~~l~~~L~~g~iIID~gn~  103 (470)
T PTZ00142         81 DETIDNLLPLLEKGDIIIDGGNE  103 (470)
T ss_pred             HHHHHHHHhhCCCCCEEEECCCC
Confidence               21  1346789999999865

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.67  E-value=0.029  Score=52.70  Aligned_cols=51  Identities=22%  Similarity=0.149  Sum_probs=43.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC----------------------------------CCCHhhhcCCCcE
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------------------TKNPEQITSEADI  182 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~----------------------------------t~~l~~~l~~ADI  182 (272)
                      ++|.|||+|-+ |..++..++..|..|++.++.                                  +.++++.+++||+
T Consensus         8 ~~VaVIGaG~M-G~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl   86 (321)
T PRK07066          8 KTFAAIGSGVI-GSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF   86 (321)
T ss_pred             CEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence            68999999875 999999999999999999754                                  1245677899999


Q ss_pred             EEEecC
Q 024116          183 VIAAAG  188 (272)
Q Consensus       183 VIsa~g  188 (272)
                      ||-++.
T Consensus        87 ViEavp   92 (321)
T PRK07066         87 IQESAP   92 (321)
T ss_pred             EEECCc
Confidence            999887

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.66  E-value=0.017  Score=51.96  Aligned_cols=35  Identities=20%  Similarity=0.356  Sum_probs=30.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  168 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~  168 (272)
                      .|+.++|+|+|.|+. |..++.+|+..|. ++++++.
T Consensus        29 ~L~~~~VliiG~Ggl-Gs~va~~La~~Gvg~i~lvD~   64 (245)
T PRK05690         29 KLKAARVLVVGLGGL-GCAASQYLAAAGVGTLTLVDF   64 (245)
T ss_pred             HhcCCeEEEECCCHH-HHHHHHHHHHcCCCEEEEEcC
Confidence            468999999999995 9999999999995 8888864

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.65  E-value=0.017  Score=52.88  Aligned_cols=32  Identities=25%  Similarity=0.292  Sum_probs=29.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++|.|||+|.+ |.+++..|+..|..|++++++
T Consensus         4 ~~I~ViGaG~m-G~~iA~~la~~G~~V~l~d~~   35 (291)
T PRK06035          4 KVIGVVGSGVM-GQGIAQVFARTGYDVTIVDVS   35 (291)
T ss_pred             cEEEEECccHH-HHHHHHHHHhcCCeEEEEeCC
Confidence            68999999885 999999999999999999865

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.65  E-value=0.028  Score=51.65  Aligned_cols=32  Identities=16%  Similarity=0.242  Sum_probs=29.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++|.|||+|.+ |.++|..|+..|..|++.+++
T Consensus         6 ~~V~ViGaG~m-G~~iA~~~a~~G~~V~l~d~~   37 (286)
T PRK07819          6 QRVGVVGAGQM-GAGIAEVCARAGVDVLVFETT   37 (286)
T ss_pred             cEEEEEcccHH-HHHHHHHHHhCCCEEEEEECC
Confidence            48999999886 999999999999999999865

>PRK06138 short chain dehydrogenase; Provisional

Probab=95.64  E-value=0.014  Score=51.16  Aligned_cols=38  Identities=26%  Similarity=0.385  Sum_probs=34.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++.+|+.++..|+++|++|+++.|+.
T Consensus         2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~   39 (252)
T PRK06138          2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDA   39 (252)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCH
Confidence            47899999999999999999999999999998887653

>PRK08628 short chain dehydrogenase; Provisional

Probab=95.64  E-value=0.019  Score=50.73  Aligned_cols=40  Identities=23%  Similarity=0.247  Sum_probs=35.3

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++++||+++|.|+++-+|+.++..|+++|+.|.++.|+.
T Consensus         2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~   41 (258)
T PRK08628          2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSA   41 (258)
T ss_pred             CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCCh
Confidence            3678999999999998899999999999999988876643

>PRK07063 short chain dehydrogenase; Provisional

Probab=95.63  E-value=0.013  Score=51.92  Aligned_cols=37  Identities=24%  Similarity=0.338  Sum_probs=33.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~   40 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLD   40 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999998889999999999999999988775

>CHL00194 ycf39 Ycf39; Provisional

Probab=95.62  E-value=0.023  Score=52.39  Aligned_cols=51  Identities=14%  Similarity=0.077  Sum_probs=41.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------CHhhhcCCCcEEEEecC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAG  188 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~---------------------~l~~~l~~ADIVIsa~g  188 (272)
                      +|+|.|++|.+|+.++..|.++|.+|+++.|+..                     ++.+.++.+|+||.+++
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            7999999999999999999999999998877521                     23456778888887665

>PRK05717 oxidoreductase; Validated

Probab=95.61  E-value=0.014  Score=51.52  Aligned_cols=39  Identities=21%  Similarity=0.160  Sum_probs=34.7

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ...++||+++|.|+++.+|+.++..|+++|++|.++.++
T Consensus         5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~   43 (255)
T PRK05717          5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLD   43 (255)
T ss_pred             CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCC
Confidence            457899999999998889999999999999999988654

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=95.61  E-value=0.017  Score=51.30  Aligned_cols=38  Identities=16%  Similarity=0.203  Sum_probs=34.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   39 (262)
T TIGR03325         2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSA   39 (262)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            36899999999988889999999999999999987753

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=95.61  E-value=0.028  Score=50.81  Aligned_cols=92  Identities=17%  Similarity=0.261  Sum_probs=61.3

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCCCC-----------------CH----h
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALTK-----------------NP----E  174 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~-V~v~~~~t~-----------------~l----~  174 (272)
                      +|....++..+++... ..|++|+|+|+|. +|..+++++..+|++ |+++.+..+                 +.    .
T Consensus       103 ~~~~~ta~~al~~~~~-~~g~~VlV~G~G~-vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~  180 (280)
T TIGR03366       103 GCATATVMAALEAAGD-LKGRRVLVVGAGM-LGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQG  180 (280)
T ss_pred             hhHHHHHHHHHHhccC-CCCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHH
Confidence            3333334445555443 4899999999976 699999999999986 777654311                 11    1


Q ss_pred             hhc--CCCcEEEEecCCCccc--cCCCcCCCcEEEEeeeC
Q 024116          175 QIT--SEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       175 ~~l--~~ADIVIsa~g~p~~i--~~~~vk~g~vviDig~~  210 (272)
                      +..  +.+|+||.++|.+..+  --+.++++..++-+|..
T Consensus       181 ~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~  220 (280)
T TIGR03366       181 GLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSV  220 (280)
T ss_pred             HHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccC
Confidence            111  3489999999977543  23467888888888853

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=95.61  E-value=0.22  Score=47.06  Aligned_cols=152  Identities=16%  Similarity=0.152  Sum_probs=94.8

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEEcCCC--------------CCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCC-----
Q 024116           21 DSQTYVRNKIKACEEVGIKSIVTEFADG--------------CTEDEVLNALSNYNQDSSINGILVQLPLPQHLD-----   81 (272)
Q Consensus        21 ~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~--------------~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~-----   81 (272)
                      .|..=--+-..++.++|.++.+..-...              ...+.+.+.++-|+.-  +|+|.+--|-.. .+     
T Consensus        48 pSTRTR~SFe~A~~~LGg~~i~l~~~~ss~~~e~~~g~~~~~~kgEsl~Dtarvls~~--~D~iv~R~~~~g-~~~~~~~  124 (335)
T PRK04523         48 PSLRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFELGAVMDGETEEHIREVARVLSRY--VDLIGVRAFPKF-VDWSKDR  124 (335)
T ss_pred             CCchhHHHHHHHHHHcCCeEEEeCcccccchhhcccccccCCCCCcCHHHHHHHHHHh--CcEEEEeCCccc-cccccch
Confidence            3443344566789999999887743321              1235567777777763  788888765221 10     


Q ss_pred             HHHHHhcCCcccccCccccccccccccCCCCCccccCCHHHH-HHHHHHhCCCC-ccceEEEEcCC------cccHHHHH
Q 024116           82 EGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGC-IELLIRSGVEI-MGKNAVVIGRS------NIVGLPTS  153 (272)
Q Consensus        82 ~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~-~~~l~~~~~~l-~gk~v~ViG~g------~~vG~~la  153 (272)
                      ....++.+...-   .+-.+|.     +  .. +.||=+.+= +.+.++.| .+ +|++++|++.|      ..|.+.++
T Consensus       125 ~~~~~~~~a~~s---~vPVINa-----~--~~-~HPtQaLaDl~Ti~e~~g-~~~~g~ki~i~~~gd~~~~~~~v~~S~~  192 (335)
T PRK04523        125 QDQVLNSFAKYS---TVPVINM-----E--TI-THPCQELAHALALQEHFG-TTLRGKKYVLTWTYHPKPLNTAVANSAL  192 (335)
T ss_pred             hHHHHHHHHHhC---CCCEEEC-----C--CC-CChHHHHHHHHHHHHHhC-CccCCCEEEEEEeccCcccccHHHHHHH
Confidence            112222222211   2344454     2  23 779988884 44444444 58 89999887643      24688999


Q ss_pred             HHHHhCCCEEEEEeC-C-------------------------CCCHhhhcCCCcEEEEec
Q 024116          154 LLLQRHHATVSIVHA-L-------------------------TKNPEQITSEADIVIAAA  187 (272)
Q Consensus       154 ~~L~~~ga~V~v~~~-~-------------------------t~~l~~~l~~ADIVIsa~  187 (272)
                      ..+...|++|++++- .                         +.++.+.++.||+|.+-.
T Consensus       193 ~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~  252 (335)
T PRK04523        193 LIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGADVVYAKS  252 (335)
T ss_pred             HHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEece
Confidence            999999999999986 2                         135578899999998543

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.61  E-value=0.025  Score=52.30  Aligned_cols=53  Identities=21%  Similarity=0.239  Sum_probs=43.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------------------------------CCHhhhcC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------------------------KNPEQITS  178 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------------------------------~~l~~~l~  178 (272)
                      ++|.|||.|-+ |.+++..|++.|.+|++++++.                                      .++.+.++
T Consensus         3 ~~V~VIG~G~m-G~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~   81 (308)
T PRK06129          3 GSVAIIGAGLI-GRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA   81 (308)
T ss_pred             cEEEEECccHH-HHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence            47999998775 9999999999999999998752                                      23445678


Q ss_pred             CCcEEEEecCCC
Q 024116          179 EADIVIAAAGVA  190 (272)
Q Consensus       179 ~ADIVIsa~g~p  190 (272)
                      ++|+||.+++..
T Consensus        82 ~ad~Vi~avpe~   93 (308)
T PRK06129         82 DADYVQESAPEN   93 (308)
T ss_pred             CCCEEEECCcCC
Confidence            999999998753

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.60  E-value=0.06  Score=51.11  Aligned_cols=113  Identities=19%  Similarity=0.202  Sum_probs=68.0

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHh-CCCE---EEEEeCCC----------CC-----H-hhhcCCCcEEEEecCCCc--c
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQR-HHAT---VSIVHALT----------KN-----P-EQITSEADIVIAAAGVAN--L  192 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~-~ga~---V~v~~~~t----------~~-----l-~~~l~~ADIVIsa~g~p~--~  192 (272)
                      ++.+|.|||++|.+|+-+..+|.+ ....   +..+.+..          ++     + .+..++.|+|+.|+|..-  -
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~~~~Divf~a~~~~~s~~   83 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQ   83 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHhcCCCEEEECCChHHHHH
Confidence            456899999999999999999994 5555   54454331          01     1 123478999999987431  1


Q ss_pred             ccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEeccCCCcccHHHHHHH
Q 024116          193 VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAML  257 (272)
Q Consensus       193 i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL  257 (272)
                      +-+...+.|+.|||.+....-   ++..   --.+-.++.+.+++..+ +-..||   -.|++|+
T Consensus        84 ~~~~~~~~G~~VID~Ss~fR~---~~~v---plvvPEvN~e~i~~~~~-iIanPn---C~tt~~~  138 (347)
T PRK06728         84 FVNQAVSSGAIVIDNTSEYRM---AHDV---PLVVPEVNAHTLKEHKG-IIAVPN---CSALQMV  138 (347)
T ss_pred             HHHHHHHCCCEEEECchhhcC---CCCC---CeEeCCcCHHHHhccCC-EEECCC---CHHHHHH
Confidence            223344679999999876542   1111   12344555444444324 334776   4455555

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.60  E-value=0.015  Score=54.77  Aligned_cols=76  Identities=22%  Similarity=0.246  Sum_probs=52.1

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCC---EEEEEeCCC---------------CCHh-hhcCCCcEEEEecCCCc--ccc
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHALT---------------KNPE-QITSEADIVIAAAGVAN--LVR  194 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga---~V~v~~~~t---------------~~l~-~~l~~ADIVIsa~g~p~--~i~  194 (272)
                      +++|.|+|++|.+|+.++.+|.+++.   ++....+..               .++. ..++.+|+||.|+|...  -+-
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~~   80 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKKYA   80 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHHHH
Confidence            46899999999999999999998764   445554331               0111 23468999999997432  122


Q ss_pred             CCCcCCCcEEEEeeeCC
Q 024116          195 GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       195 ~~~vk~g~vviDig~~~  211 (272)
                      +..++.|++|||....+
T Consensus        81 ~~~~~~G~~VIDlS~~~   97 (334)
T PRK14874         81 PKAAAAGAVVIDNSSAF   97 (334)
T ss_pred             HHHHhCCCEEEECCchh
Confidence            23456788999998664

>PRK05867 short chain dehydrogenase; Provisional

Probab=95.58  E-value=0.017  Score=50.98  Aligned_cols=38  Identities=26%  Similarity=0.343  Sum_probs=34.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~   43 (253)
T PRK05867          6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHL   43 (253)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence            47899999999987789999999999999999987753

>PRK12829 short chain dehydrogenase; Provisional

Probab=95.57  E-value=0.022  Score=50.21  Aligned_cols=38  Identities=16%  Similarity=0.204  Sum_probs=34.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++++|+++|.|+++.+|+.++..|+++|++|+++.|+.
T Consensus         8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~   45 (264)
T PRK12829          8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSE   45 (264)
T ss_pred             ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47999999999999999999999999999998887753

>PRK08265 short chain dehydrogenase; Provisional

Probab=95.57  E-value=0.016  Score=51.56  Aligned_cols=38  Identities=29%  Similarity=0.385  Sum_probs=34.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDA   40 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46899999999988789999999999999999988764

>PRK06057 short chain dehydrogenase; Provisional

Probab=95.57  E-value=0.014  Score=51.56  Aligned_cols=37  Identities=30%  Similarity=0.345  Sum_probs=33.9

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++||+++|+|+++-+|+.++..|+++|++|.++.|+.
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~   41 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDP   41 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            6899999999988899999999999999999987764

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=95.56  E-value=0.032  Score=48.53  Aligned_cols=54  Identities=19%  Similarity=0.137  Sum_probs=45.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhhcCCCcEEEEecCCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------~~l~~~l~~ADIVIsa~g~p  190 (272)
                      +|+.|||++|-+|.-++.-+.++|.+||.+-|+.                   ..+.+.+..-|+||+|.|.+
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~   73 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG   73 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence            4799999999999999999999999999887763                   12346788899999999854

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.55  E-value=0.028  Score=54.17  Aligned_cols=71  Identities=28%  Similarity=0.335  Sum_probs=53.1

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------------------------------CHhhhcCCCcEE
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------------------------NPEQITSEADIV  183 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~----------------------------------~l~~~l~~ADIV  183 (272)
                      +|.|||.|.+ |.+++..|++.|.+|++++++..                                  ++.+.+++||+|
T Consensus         2 kI~vIGlG~~-G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv   80 (411)
T TIGR03026         2 KIAVIGLGYV-GLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI   80 (411)
T ss_pred             EEEEECCCch-hHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence            6899999885 99999999999999999986531                                  223457889999


Q ss_pred             EEecCCCcc---------cc------CCCcCCCcEEEEeee
Q 024116          184 IAAAGVANL---------VR------GSWLKPGAVVLDVGT  209 (272)
Q Consensus       184 Isa~g~p~~---------i~------~~~vk~g~vviDig~  209 (272)
                      |.+++.|.-         +.      ...+++|.+|+|...
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~ST  121 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLEST  121 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence            999987631         11      123467888888764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.55  E-value=0.024  Score=50.14  Aligned_cols=38  Identities=24%  Similarity=0.265  Sum_probs=34.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~   48 (258)
T PRK06935         11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG   48 (258)
T ss_pred             ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999999999999999999999888765

>PRK07890 short chain dehydrogenase; Provisional

Probab=95.54  E-value=0.018  Score=50.70  Aligned_cols=37  Identities=24%  Similarity=0.237  Sum_probs=33.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++|+++|.|+++.+|+.++..|+++|++|+++.|+.
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~   39 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTA   39 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence            5789999999998899999999999999999887653

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.53  E-value=0.034  Score=54.45  Aligned_cols=123  Identities=17%  Similarity=0.143  Sum_probs=67.4

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCc-CCCcEEEEeeeCCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL-KPGAVVLDVGTCPVD  213 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~v-k~g~vviDig~~~~~  213 (272)
                      .||+|+|+|.|.. |++++..|. +|++|++.+.+.....+.-+.-+..+  .|. +  +.+.+ ....+|+-=|+++..
T Consensus         5 ~~~~v~v~G~G~s-G~a~~~~L~-~g~~v~v~D~~~~~~~~~~~~~~~~~--~~~-~--~~~~~~~~d~vV~SPgI~~~~   77 (454)
T PRK01368          5 TKQKIGVFGLGKT-GISVYEELQ-NKYDVIVYDDLKANRDIFEELYSKNA--IAA-L--SDSRWQNLDKIVLSPGIPLTH   77 (454)
T ss_pred             CCCEEEEEeecHH-HHHHHHHHh-CCCEEEEECCCCCchHHHHhhhcCce--ecc-C--ChhHhhCCCEEEECCCCCCCC
Confidence            5899999999998 999999998 59999999855432211100001111  111 0  00111 123445555555431


Q ss_pred             CCCCCCCCCCceEecccchhh-hhhhceEeccCCCcccHHHHHHHHHHHHHHH
Q 024116          214 VSVDPSCEYGYRLMGDVCYEE-AMRLASVITPVPGGVGPMTVAMLLSNTLDSA  265 (272)
Q Consensus       214 ~~~~~~~~~~~k~~Gdvd~~~-~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~  265 (272)
                      .........+-++.+++++-. ..+... +--|-|--|.=|+.-|+.++++..
T Consensus        78 p~~~~a~~~gi~v~~e~el~~~~~~~~~-~IaVTGTnGKTTTt~ll~~iL~~~  129 (454)
T PRK01368         78 EIVKIAKNFNIPITSDIDLLFEKSKNLK-FIAITGTNGKSTTTALISHILNSN  129 (454)
T ss_pred             HHHHHHHHCCCceecHHHHHHHHhcCCC-EEEEECCCcHHHHHHHHHHHHHhc
Confidence            000000001235788887632 111111 223668889999999999998764

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=95.51  E-value=0.074  Score=50.44  Aligned_cols=78  Identities=21%  Similarity=0.274  Sum_probs=55.4

Q ss_pred             cccCCHHHHHHHHHHhC------CCCccceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC-----------------
Q 024116          115 FIPCTPKGCIELLIRSG------VEIMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT-----------------  170 (272)
Q Consensus       115 ~~p~Ta~g~~~~l~~~~------~~l~gk~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t-----------------  170 (272)
                      -+|.++.-.++.|-+..      -.=+|+.++|+|+|+.||..+++.+...| +.|+.+.+..                 
T Consensus       131 ~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~vvdy~  210 (347)
T KOG1198|consen  131 ALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGADEVVDYK  210 (347)
T ss_pred             cCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHcCCcEeecCC
Confidence            34666666666666555      44579999999999999999999999999 5655554432                 


Q ss_pred             -CCHhhhcCC-----CcEEEEecCCCcc
Q 024116          171 -KNPEQITSE-----ADIVIAAAGVANL  192 (272)
Q Consensus       171 -~~l~~~l~~-----ADIVIsa~g~p~~  192 (272)
                       .+..+.++.     .|+|+-++|.+.+
T Consensus       211 ~~~~~e~~kk~~~~~~DvVlD~vg~~~~  238 (347)
T KOG1198|consen  211 DENVVELIKKYTGKGVDVVLDCVGGSTL  238 (347)
T ss_pred             CHHHHHHHHhhcCCCccEEEECCCCCcc
Confidence             233444444     7999988887543

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.50  E-value=0.021  Score=52.27  Aligned_cols=32  Identities=19%  Similarity=0.129  Sum_probs=29.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++|.|||+|.+ |.+++..|+..|.+|++.+++
T Consensus         5 ~kI~vIGaG~m-G~~iA~~la~~G~~V~l~d~~   36 (292)
T PRK07530          5 KKVGVIGAGQM-GNGIAHVCALAGYDVLLNDVS   36 (292)
T ss_pred             CEEEEECCcHH-HHHHHHHHHHCCCeEEEEeCC
Confidence            68999999886 999999999999999999865

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=95.49  E-value=0.013  Score=57.43  Aligned_cols=56  Identities=23%  Similarity=0.304  Sum_probs=46.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhhcCCCcEEEEecCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------~~l~~~l~~ADIVIsa~g~  189 (272)
                      .|+||+|+|||.|.. |++-|..|...|.+|++.-|..                   .++.+.++.||+|+..++-
T Consensus        33 ~LkgKtIaIIGyGSq-G~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPD  107 (487)
T PRK05225         33 YLKGKKIVIVGCGAQ-GLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPD  107 (487)
T ss_pred             HhCCCEEEEEccCHH-HHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCCh
Confidence            368999999999885 9999999999999988554431                   3567889999999999883

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=95.48  E-value=0.035  Score=54.35  Aligned_cols=53  Identities=25%  Similarity=0.178  Sum_probs=44.5

Q ss_pred             ccCCHHHHHHH----HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE-EEeCC
Q 024116          116 IPCTPKGCIEL----LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS-IVHAL  169 (272)
Q Consensus       116 ~p~Ta~g~~~~----l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~-v~~~~  169 (272)
                      .++|.+|++..    ++..+.+++||+|+|=|.|. ||..++..|.+.|++|+ +++++
T Consensus       213 ~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~Gn-Vg~~aa~~L~e~GakVVavSD~~  270 (454)
T PTZ00079        213 PEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGN-VAQYAVEKLLQLGAKVLTMSDSD  270 (454)
T ss_pred             CcccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEEcCC
Confidence            36798886544    55678899999999999988 59999999999999877 77665

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=95.47  E-value=0.04  Score=51.69  Aligned_cols=93  Identities=17%  Similarity=0.206  Sum_probs=61.3

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC---------------------Hhh
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------------------PEQ  175 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~---------------------l~~  175 (272)
                      ||........+...+....|.+++|.|.|. +|..+++++..+|+.|+++.+..+.                     +.+
T Consensus       162 ~~~~~ta~~al~~~~~~~~g~~vlV~G~G~-vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~  240 (357)
T PLN02514        162 LCAGVTVYSPLSHFGLKQSGLRGGILGLGG-VGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQE  240 (357)
T ss_pred             hhhHHHHHHHHHHcccCCCCCeEEEEcccH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHH
Confidence            333333445555555555799999999866 6999999999999987766543211                     112


Q ss_pred             hcCCCcEEEEecCCCcccc--CCCcCCCcEEEEeeeC
Q 024116          176 ITSEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       176 ~l~~ADIVIsa~g~p~~i~--~~~vk~g~vviDig~~  210 (272)
                      .....|++|.++|.+..+.  -+.++++..++.+|..
T Consensus       241 ~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~  277 (357)
T PLN02514        241 AADSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVI  277 (357)
T ss_pred             hcCCCcEEEECCCchHHHHHHHHHhccCCEEEEECCC
Confidence            2234699999988654321  2456787788888864

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=95.46  E-value=0.034  Score=51.00  Aligned_cols=90  Identities=13%  Similarity=-0.038  Sum_probs=57.6

Q ss_pred             HHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------------CCHhhhc---
Q 024116          121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------KNPEQIT---  177 (272)
Q Consensus       121 ~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------------~~l~~~l---  177 (272)
                      ...+..+.+...--.|.+|+|.|+++.+|..+++++..+|++|+.+.++.                    .+..+.+   
T Consensus       124 ~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~  203 (325)
T TIGR02825       124 LTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKA  203 (325)
T ss_pred             HHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHh
Confidence            33344443333334789999999867689999999999999887665431                    1122211   


Q ss_pred             --CCCcEEEEecCCCccc-cCCCcCCCcEEEEeeeC
Q 024116          178 --SEADIVIAAAGVANLV-RGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       178 --~~ADIVIsa~g~p~~i-~~~~vk~g~vviDig~~  210 (272)
                        +..|+|+.++|.+.+- .-++++++..++.+|..
T Consensus       204 ~~~gvdvv~d~~G~~~~~~~~~~l~~~G~iv~~G~~  239 (325)
T TIGR02825       204 SPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAI  239 (325)
T ss_pred             CCCCeEEEEECCCHHHHHHHHHHhCcCcEEEEecch
Confidence              2368888888865431 12456777777788753

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.44  E-value=0.025  Score=49.85  Aligned_cols=36  Identities=14%  Similarity=0.233  Sum_probs=31.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~  169 (272)
                      .++.++|+|+|.|+. |..++..|...|. ++++++..
T Consensus        25 ~L~~~~V~ViG~Ggl-Gs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         25 KLKKAKVGIAGAGGL-GSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HHhCCCEEEECcCHH-HHHHHHHHHHcCCCeEEEEeCC
Confidence            368899999999996 9999999999996 68888754

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.44  E-value=0.035  Score=54.49  Aligned_cols=126  Identities=17%  Similarity=0.204  Sum_probs=72.9

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-CHhh--hcCCCcEEEEecCCCccccCCCcC-CCcEEEEeee
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-NPEQ--ITSEADIVIAAAGVANLVRGSWLK-PGAVVLDVGT  209 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-~l~~--~l~~ADIVIsa~g~p~~i~~~~vk-~g~vviDig~  209 (272)
                      ++||+++|+|.|.. |++++..|.++|+.|++.+.+.. ...+  .+++ ++.....+.+    ++.+. ...+|+--|+
T Consensus         6 ~~~~~v~v~G~G~s-G~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~----~~~~~~~d~vV~SpgI   79 (468)
T PRK04690          6 LEGRRVALWGWGRE-GRAAYRALRAHLPAQALTLFCNAVEAREVGALAD-AALLVETEAS----AQRLAAFDVVVKSPGI   79 (468)
T ss_pred             cCCCEEEEEccchh-hHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhh-cCEEEeCCCC----hHHccCCCEEEECCCC
Confidence            46899999999998 99999999999999999885432 2211  2333 3222222211    11221 2445666666


Q ss_pred             CCCCCCCCCCCCCCceEecccch--hhhhh-h--ceEeccCCCcccHHHHHHHHHHHHHHH
Q 024116          210 CPVDVSVDPSCEYGYRLMGDVCY--EEAMR-L--ASVITPVPGGVGPMTVAMLLSNTLDSA  265 (272)
Q Consensus       210 ~~~~~~~~~~~~~~~k~~Gdvd~--~~~~~-~--~~~~tpvpGGvGp~T~amL~~n~v~a~  265 (272)
                      ++...........+-++.+++++  ....+ .  ...+--|-|-.|.=|+.-|+.++++..
T Consensus        80 ~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~  140 (468)
T PRK04690         80 SPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAA  140 (468)
T ss_pred             CCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence            65420000000112357888875  11111 0  011223668899999999999998764

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=95.44  E-value=0.019  Score=50.77  Aligned_cols=39  Identities=28%  Similarity=0.331  Sum_probs=34.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||+++|.|+++.+|..++..|+++|++|+++.|+.
T Consensus         8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~   46 (259)
T PRK08213          8 FDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKA   46 (259)
T ss_pred             hCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            457899999999988899999999999999999988753

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=95.44  E-value=0.028  Score=49.16  Aligned_cols=52  Identities=13%  Similarity=0.050  Sum_probs=43.2

Q ss_pred             EEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-----------------------CCHhhhcCCCcEEEEecCCC
Q 024116          139 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------------------KNPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       139 v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-----------------------~~l~~~l~~ADIVIsa~g~p  190 (272)
                      |+|+|+.|.+|++++..|...+.+|+++.|+.                       +.|.+.++.+|.||..++..
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~   75 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS   75 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence            68999988899999999999999999998863                       23456788899999888843

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=95.43  E-value=0.027  Score=52.24  Aligned_cols=36  Identities=14%  Similarity=0.095  Sum_probs=31.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCC--CEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~g--a~V~v~~~~  169 (272)
                      ++||+++|.|+++.+|+.++..|+++|  .+|+++.|.
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~   39 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD   39 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence            478999999999889999999999886  688887654

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=95.43  E-value=0.017  Score=51.37  Aligned_cols=39  Identities=21%  Similarity=0.255  Sum_probs=35.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||+++|.|+++.+|+.++..|+++|++|.+..++.
T Consensus         6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~   44 (265)
T PRK07097          6 FSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQ   44 (265)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence            467999999999999999999999999999998887654

>PRK08703 short chain dehydrogenase; Provisional

Probab=95.42  E-value=0.026  Score=49.23  Aligned_cols=38  Identities=24%  Similarity=0.203  Sum_probs=34.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++.+|+.++..|+++|++|+++.|+.
T Consensus         3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~   40 (239)
T PRK08703          3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQ   40 (239)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence            47899999999988899999999999999999988765

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=95.41  E-value=0.054  Score=52.21  Aligned_cols=95  Identities=20%  Similarity=0.304  Sum_probs=63.7

Q ss_pred             cCCHHHHHHHHHHh---CCCCccceEEEEcCC----------------cccHHHHHHHHHhCCCEEEEEeCCC-------
Q 024116          117 PCTPKGCIELLIRS---GVEIMGKNAVVIGRS----------------NIVGLPTSLLLQRHHATVSIVHALT-------  170 (272)
Q Consensus       117 p~Ta~g~~~~l~~~---~~~l~gk~v~ViG~g----------------~~vG~~la~~L~~~ga~V~v~~~~t-------  170 (272)
                      +++++-++..+.+.   +-+++||+++|-|.+                |-.|.+++..|..+|++|+++++..       
T Consensus       163 ~~~~~~i~~~v~~~~~~~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~~~~~  242 (390)
T TIGR00521       163 LAEPETIVKAAEREFSPKEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLLTPPG  242 (390)
T ss_pred             CCCHHHHHHHHHHHHhhccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccCCCCC
Confidence            67778777766643   246999999999873                3359999999999999999987542       


Q ss_pred             ---------CCH-h----hhcCCCcEEEEecCCCcccc----CCCcCC--CcEEEEeeeCC
Q 024116          171 ---------KNP-E----QITSEADIVIAAAGVANLVR----GSWLKP--GAVVLDVGTCP  211 (272)
Q Consensus       171 ---------~~l-~----~~l~~ADIVIsa~g~p~~i~----~~~vk~--g~vviDig~~~  211 (272)
                               .++ +    +...+.|++|.+.+...+-.    ..-+++  ....+.+--+|
T Consensus       243 ~~~~~v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~p  303 (390)
T TIGR00521       243 VKSIKVSTAEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNP  303 (390)
T ss_pred             cEEEEeccHHHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCc
Confidence                     122 1    23356899998888655421    223443  23445555554

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>PLN02858 fructose-bisphosphate aldolase

Probab=95.39  E-value=0.027  Score=62.19  Aligned_cols=74  Identities=18%  Similarity=0.236  Sum_probs=58.6

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCcc----c-cC-
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL----V-RG-  195 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~~----i-~~-  195 (272)
                      -++|.+||-|.+ |.+++..|...|.+|++++++.              .+..+.++++|+||++++.|..    + .. 
T Consensus       324 ~~~IGfIGlG~M-G~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~  402 (1378)
T PLN02858        324 VKRIGFIGLGAM-GFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL  402 (1378)
T ss_pred             CCeEEEECchHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence            488999999886 9999999999999999998763              2456778999999999986542    2 11 


Q ss_pred             ---CCcCCCcEEEEeeeC
Q 024116          196 ---SWLKPGAVVLDVGTC  210 (272)
Q Consensus       196 ---~~vk~g~vviDig~~  210 (272)
                         +.+++|.++||+...
T Consensus       403 g~~~~l~~g~ivVd~STv  420 (1378)
T PLN02858        403 GAVSALPAGASIVLSSTV  420 (1378)
T ss_pred             hHHhcCCCCCEEEECCCC
Confidence               234778899998763

>PRK06841 short chain dehydrogenase; Provisional

Probab=95.39  E-value=0.028  Score=49.42  Aligned_cols=38  Identities=26%  Similarity=0.376  Sum_probs=34.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~   48 (255)
T PRK06841         11 FDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRS   48 (255)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999998888999999999999999988875

>PRK07060 short chain dehydrogenase; Provisional

Probab=95.38  E-value=0.023  Score=49.52  Aligned_cols=39  Identities=23%  Similarity=0.309  Sum_probs=34.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||+++|.|+++.+|+.++..|+++|++|+++.|+.
T Consensus         5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~   43 (245)
T PRK07060          5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNA   43 (245)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            457899999999987789999999999999999988754

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.38  E-value=0.022  Score=54.33  Aligned_cols=36  Identities=25%  Similarity=0.455  Sum_probs=32.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~  169 (272)
                      .+++++|+|+|.|+. |..++.+|+..|. ++++++..
T Consensus       132 ~l~~~~VlvvG~GG~-Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        132 RLLEARVLLIGAGGL-GSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HHhcCcEEEECCCHH-HHHHHHHHHHcCCCeEEEEeCC
Confidence            468999999999996 9999999999997 89998754

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.37  E-value=0.026  Score=50.75  Aligned_cols=71  Identities=20%  Similarity=0.244  Sum_probs=50.0

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC---EEEEEeCCC----------------CCHhhhcCCCcEEEEecCCCc---cccC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHALT----------------KNPEQITSEADIVIAAAGVAN---LVRG  195 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga---~V~v~~~~t----------------~~l~~~l~~ADIVIsa~g~p~---~i~~  195 (272)
                      ++.+||.|.+ |.+++..|.+.|.   .+.+++|+.                .+..+.++++|+||.++....   ++..
T Consensus         2 ~IgiIG~G~m-G~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~~~vl~~   80 (258)
T PRK06476          2 KIGFIGTGAI-TEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLRA   80 (258)
T ss_pred             eEEEECcCHH-HHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHHHHHHHH
Confidence            6899999886 9999999998874   356777642                234456788999999998322   2222


Q ss_pred             CCcCCCcEEEEeee
Q 024116          196 SWLKPGAVVLDVGT  209 (272)
Q Consensus       196 ~~vk~g~vviDig~  209 (272)
                      -+++++.+||++.-
T Consensus        81 l~~~~~~~vis~~a   94 (258)
T PRK06476         81 LRFRPGQTVISVIA   94 (258)
T ss_pred             hccCCCCEEEEECC
Confidence            23567777877653

>PRK06182 short chain dehydrogenase; Validated

Probab=95.36  E-value=0.03  Score=50.05  Aligned_cols=35  Identities=29%  Similarity=0.139  Sum_probs=31.7

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++|+++|.|+++-+|+.++..|.++|++|+++.|+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~   36 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARR   36 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            57999999998778999999999999999988775

>PRK09186 flagellin modification protein A; Provisional

Probab=95.36  E-value=0.02  Score=50.33  Aligned_cols=37  Identities=14%  Similarity=0.209  Sum_probs=33.3

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++||+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~   38 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDK   38 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCh
Confidence            5789999999988889999999999999999887654

>PRK09242 tropinone reductase; Provisional

Probab=95.36  E-value=0.017  Score=51.10  Aligned_cols=39  Identities=26%  Similarity=0.252  Sum_probs=34.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ..++||+++|.|+++-+|+.++..|.++|++|+++.|+.
T Consensus         5 ~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~   43 (257)
T PRK09242          5 WRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDA   43 (257)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            357899999999988889999999999999999887653

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=95.32  E-value=0.043  Score=51.59  Aligned_cols=70  Identities=23%  Similarity=0.291  Sum_probs=53.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC----------------------------CCCHhhhcCCCcEEEEecC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------------TKNPEQITSEADIVIAAAG  188 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~----------------------------t~~l~~~l~~ADIVIsa~g  188 (272)
                      ++|.|+|+|.- |.++|..|.+.|..|++-.|+                            +.++.+.+++||+||-+++
T Consensus         2 ~kI~ViGaGsw-GTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP   80 (329)
T COG0240           2 MKIAVIGAGSW-GTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP   80 (329)
T ss_pred             ceEEEEcCChH-HHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence            58999999886 999999999999888887653                            2578899999999999998


Q ss_pred             CCcc---cc--CCCcCCCcEEEEe
Q 024116          189 VANL---VR--GSWLKPGAVVLDV  207 (272)
Q Consensus       189 ~p~~---i~--~~~vk~g~vviDi  207 (272)
                      +-.+   ++  +..++++..++-+
T Consensus        81 s~~~r~v~~~l~~~l~~~~~iv~~  104 (329)
T COG0240          81 SQALREVLRQLKPLLLKDAIIVSA  104 (329)
T ss_pred             hHHHHHHHHHHhhhccCCCeEEEE
Confidence            6321   11  1345566666554

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=95.31  E-value=0.065  Score=50.91  Aligned_cols=93  Identities=15%  Similarity=0.163  Sum_probs=62.0

Q ss_pred             cCCHHHHHHHHHHhCCC-CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC---------------------Hh
Q 024116          117 PCTPKGCIELLIRSGVE-IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------------------PE  174 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~-l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~---------------------l~  174 (272)
                      +|....++..+...+.. -.|.+++|.|.|. +|..+++++..+|++|+++.+..+.                     +.
T Consensus       159 ~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~-vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~  237 (375)
T PLN02178        159 LCAGITVYSPMKYYGMTKESGKRLGVNGLGG-LGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMK  237 (375)
T ss_pred             hccchHHHHHHHHhCCCCCCCCEEEEEcccH-HHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHH
Confidence            44444455555555443 3699999999876 6999999999999988776543211                     11


Q ss_pred             hhcCCCcEEEEecCCCccc--cCCCcCCCcEEEEeeeC
Q 024116          175 QITSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       175 ~~l~~ADIVIsa~g~p~~i--~~~~vk~g~vviDig~~  210 (272)
                      +.+..+|+|+.++|.+..+  --+.++++-.++.+|..
T Consensus       238 ~~~~~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~  275 (375)
T PLN02178        238 EAVGTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLP  275 (375)
T ss_pred             HhhCCCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccC
Confidence            1223479999999876432  22456787778888864

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.30  E-value=0.036  Score=51.60  Aligned_cols=70  Identities=23%  Similarity=0.289  Sum_probs=51.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------------------CHhhhcCCCcEEEEec
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------------NPEQITSEADIVIAAA  187 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-----------------------------~l~~~l~~ADIVIsa~  187 (272)
                      .+|.|||.|.+ |.+++..|.+.|.+|++++|...                             ...+.++.+|+||.++
T Consensus         3 mkI~IiG~G~m-G~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~v   81 (341)
T PRK08229          3 ARICVLGAGSI-GCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTV   81 (341)
T ss_pred             ceEEEECCCHH-HHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEe
Confidence            47999999885 99999999999999999986420                             0113457899999999


Q ss_pred             CCCcc---cc--CCCcCCCcEEEEe
Q 024116          188 GVANL---VR--GSWLKPGAVVLDV  207 (272)
Q Consensus       188 g~p~~---i~--~~~vk~g~vviDi  207 (272)
                      ..+..   +.  ...++++.+|+++
T Consensus        82 k~~~~~~~~~~l~~~~~~~~iii~~  106 (341)
T PRK08229         82 KSAATADAAAALAGHARPGAVVVSF  106 (341)
T ss_pred             cCcchHHHHHHHHhhCCCCCEEEEe
Confidence            76542   11  1235677888887

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.30  E-value=0.049  Score=50.01  Aligned_cols=76  Identities=12%  Similarity=0.186  Sum_probs=53.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCCCCCHh-----------h-hcCCCcEEEEecCCCcccc--CCCc
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALTKNPE-----------Q-ITSEADIVIAAAGVANLVR--GSWL  198 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~-V~v~~~~t~~l~-----------~-~l~~ADIVIsa~g~p~~i~--~~~v  198 (272)
                      .+|++++|+|+|. ||..+++++...|++ |.++.++...++           + .-..+|+||.++|.+..++  -+.+
T Consensus       143 ~~~~~vlV~G~G~-vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~~~~~~~~~~l  221 (308)
T TIGR01202       143 VKVLPDLIVGHGT-LGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDPSLIDTLVRRL  221 (308)
T ss_pred             cCCCcEEEECCCH-HHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCHHHHHHHHHhh
Confidence            4688999999877 599999999999986 445543321111           0 1134799999999876443  2567


Q ss_pred             CCCcEEEEeeeC
Q 024116          199 KPGAVVLDVGTC  210 (272)
Q Consensus       199 k~g~vviDig~~  210 (272)
                      +++-.++-+|..
T Consensus       222 ~~~G~iv~~G~~  233 (308)
T TIGR01202       222 AKGGEIVLAGFY  233 (308)
T ss_pred             hcCcEEEEEeec
Confidence            887777778864

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.29  E-value=0.031  Score=49.34  Aligned_cols=37  Identities=22%  Similarity=0.298  Sum_probs=32.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .++||+++|.|+++-+|+.++..|.++|++|.++.++
T Consensus         4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~   40 (255)
T PRK06463          4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNS   40 (255)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999998889999999999999998877553

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=95.29  E-value=0.043  Score=48.05  Aligned_cols=38  Identities=21%  Similarity=0.257  Sum_probs=33.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .++++|+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~   41 (252)
T PRK08220          4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQA   41 (252)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            35789999999998888999999999999999888764

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=95.29  E-value=0.019  Score=52.84  Aligned_cols=58  Identities=33%  Similarity=0.413  Sum_probs=43.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEe----------------CCC----------CCHhhhcCCCcEEEEe
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVH----------------ALT----------KNPEQITSEADIVIAA  186 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~----------------~~t----------~~l~~~l~~ADIVIsa  186 (272)
                      .-.+.||.|+|++|-+|.|++.+|. ++-.|+-.+                -+|          ++|++.++.||+||-+
T Consensus        25 ~~~~~KVAvlGAaGGIGQPLSLLlK-~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIP  103 (345)
T KOG1494|consen   25 SQRGLKVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIP  103 (345)
T ss_pred             ccCcceEEEEecCCccCccHHHHHh-cCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEec
Confidence            3467899999998888999998665 443333332                111          4689999999999999


Q ss_pred             cCCCc
Q 024116          187 AGVAN  191 (272)
Q Consensus       187 ~g~p~  191 (272)
                      .|.|.
T Consensus       104 AGVPR  108 (345)
T KOG1494|consen  104 AGVPR  108 (345)
T ss_pred             CCCCC
Confidence            99765

>PRK05854 short chain dehydrogenase; Provisional

Probab=95.28  E-value=0.018  Score=53.20  Aligned_cols=38  Identities=32%  Similarity=0.295  Sum_probs=34.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~   47 (313)
T PRK05854         10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRN   47 (313)
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            36789999999998888999999999999999998875

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=95.27  E-value=0.022  Score=56.18  Aligned_cols=72  Identities=19%  Similarity=0.289  Sum_probs=52.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------CHhh---hcCCCcEEEEecCCCc----
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------NPEQ---ITSEADIVIAAAGVAN----  191 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------------~l~~---~l~~ADIVIsa~g~p~----  191 (272)
                      ++.+||.|.+ |.+++..|++.|.+|++.+|+..                   ++++   .++++|+||..+..+.    
T Consensus         1 ~IG~IGLG~M-G~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~   79 (467)
T TIGR00873         1 DIGVIGLAVM-GSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDA   79 (467)
T ss_pred             CEEEEeeHHH-HHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHH
Confidence            3689999886 99999999999999999998632                   1222   2346899998877533    


Q ss_pred             ccc--CCCcCCCcEEEEeeeC
Q 024116          192 LVR--GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       192 ~i~--~~~vk~g~vviDig~~  210 (272)
                      .+.  ...+++|.+|||.+..
T Consensus        80 Vi~~l~~~L~~g~iIID~gns  100 (467)
T TIGR00873        80 VINQLLPLLEKGDIIIDGGNS  100 (467)
T ss_pred             HHHHHHhhCCCCCEEEECCCc
Confidence            121  1346789999999853

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK05872 short chain dehydrogenase; Provisional

Probab=95.26  E-value=0.019  Score=52.40  Aligned_cols=39  Identities=23%  Similarity=0.294  Sum_probs=34.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||+++|.|+++-+|+.++..|.++|++|.++.|+.
T Consensus         5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   43 (296)
T PRK05872          5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEE   43 (296)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357899999999988889999999999999999888754

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=95.25  E-value=0.022  Score=49.61  Aligned_cols=37  Identities=24%  Similarity=0.354  Sum_probs=33.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++|+++|.|+++.+|+.++..|+++|++|+++.|+
T Consensus         3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~   39 (251)
T PRK12826          3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDIC   39 (251)
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            3578999999999999999999999999999988776

>PRK06125 short chain dehydrogenase; Provisional

Probab=95.25  E-value=0.027  Score=49.88  Aligned_cols=38  Identities=16%  Similarity=0.277  Sum_probs=34.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~   41 (259)
T PRK06125          4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDA   41 (259)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            47899999999988789999999999999999987753

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=95.24  E-value=0.048  Score=50.00  Aligned_cols=35  Identities=23%  Similarity=0.069  Sum_probs=30.7

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .||+++|.|+++.+|+.++..|+++|++|+++.++
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~   38 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRD   38 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcC
Confidence            47999999998889999999999999998776543

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=95.23  E-value=0.042  Score=54.39  Aligned_cols=53  Identities=15%  Similarity=0.086  Sum_probs=43.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------------------------CCHhhhcCCCcE
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------------KNPEQITSEADI  182 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t----------------------------------~~l~~~l~~ADI  182 (272)
                      ++|.|||.|.+ |.+++..|+..|..|++++++.                                  .++.+.+++||+
T Consensus         5 ~kIavIG~G~M-G~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~   83 (495)
T PRK07531          5 MKAACIGGGVI-GGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW   83 (495)
T ss_pred             CEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence            57999999886 9999999999999999997642                                  234467899999


Q ss_pred             EEEecCCC
Q 024116          183 VIAAAGVA  190 (272)
Q Consensus       183 VIsa~g~p  190 (272)
                      ||.+++-.
T Consensus        84 Vieavpe~   91 (495)
T PRK07531         84 IQESVPER   91 (495)
T ss_pred             EEEcCcCC
Confidence            99988743

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=95.22  E-value=0.058  Score=49.48  Aligned_cols=36  Identities=25%  Similarity=0.023  Sum_probs=31.8

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      -.||+|+|.|++|.+|+.++..|+++|.+|+.+.|+
T Consensus         3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   38 (322)
T PLN02986          3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRD   38 (322)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            468999999999999999999999999999876554

>PRK07478 short chain dehydrogenase; Provisional

Probab=95.22  E-value=0.021  Score=50.34  Aligned_cols=38  Identities=26%  Similarity=0.345  Sum_probs=33.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|.+..|+.
T Consensus         3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~   40 (254)
T PRK07478          3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQ   40 (254)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46899999999988889999999999999999887753

>PRK06194 hypothetical protein; Provisional

Probab=95.21  E-value=0.023  Score=51.06  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=33.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++++|+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~   39 (287)
T PRK06194          3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQ   39 (287)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3678999999998888999999999999999988765

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=95.20  E-value=0.061  Score=48.95  Aligned_cols=93  Identities=15%  Similarity=-0.001  Sum_probs=59.1

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhhc
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQIT  177 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------~~l~~~l  177 (272)
                      |+.....+..|.+...--.|.+++|.|+++.+|..+++++...|++|+.+.++.                   .+..+.+
T Consensus       125 ~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v  204 (329)
T cd08294         125 GMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEAL  204 (329)
T ss_pred             ccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHH
Confidence            444444555554433334799999999877789999999999999887665431                   1221111


Q ss_pred             -----CCCcEEEEecCCCccc-cCCCcCCCcEEEEeee
Q 024116          178 -----SEADIVIAAAGVANLV-RGSWLKPGAVVLDVGT  209 (272)
Q Consensus       178 -----~~ADIVIsa~g~p~~i-~~~~vk~g~vviDig~  209 (272)
                           +..|+|+.++|.+.+- .-+.++++..++.+|.
T Consensus       205 ~~~~~~gvd~vld~~g~~~~~~~~~~l~~~G~iv~~g~  242 (329)
T cd08294         205 KEAAPDGIDCYFDNVGGEFSSTVLSHMNDFGRVAVCGS  242 (329)
T ss_pred             HHHCCCCcEEEEECCCHHHHHHHHHhhccCCEEEEEcc
Confidence                 2368888888864321 1234667666777764

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK07035 short chain dehydrogenase; Provisional

Probab=95.19  E-value=0.02  Score=50.31  Aligned_cols=38  Identities=29%  Similarity=0.345  Sum_probs=34.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++++|+++|.|+++-+|+.++..|.++|++|.++.|+.
T Consensus         5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~   42 (252)
T PRK07035          5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKL   42 (252)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999999999999999999999999999888753

>PRK06196 oxidoreductase; Provisional

Probab=95.19  E-value=0.022  Score=52.38  Aligned_cols=39  Identities=31%  Similarity=0.381  Sum_probs=35.5

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ..+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~   59 (315)
T PRK06196         21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARR   59 (315)
T ss_pred             CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            567899999999998888999999999999999998876

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.19  E-value=0.016  Score=62.13  Aligned_cols=114  Identities=16%  Similarity=0.209  Sum_probs=72.7

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCC-CE-------------EEEEeCCC-----------------------CCHhhhc
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHH-AT-------------VSIVHALT-----------------------KNPEQIT  177 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~g-a~-------------V~v~~~~t-----------------------~~l~~~l  177 (272)
                      +.|+|+|||+|.+ |++.+..|++.. +.             |+||+++.                       +++.+.+
T Consensus       568 ~~~rIlVLGAG~V-G~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v  646 (1042)
T PLN02819        568 KSQNVLILGAGRV-CRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYV  646 (1042)
T ss_pred             cCCcEEEECCCHH-HHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhh
Confidence            5789999999885 999999998753 34             88887431                       1244555


Q ss_pred             CCCcEEEEecCCC-cc-ccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceE-eccCCCcccHHHH
Q 024116          178 SEADIVIAAAGVA-NL-VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASV-ITPVPGGVGPMTV  254 (272)
Q Consensus       178 ~~ADIVIsa~g~p-~~-i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~-~tpvpGGvGp~T~  254 (272)
                      +.+|+||++++.. |. +-...++.|..++|..+...+      .   ..+.     +. +++++. +.+-- |.-|--.
T Consensus       647 ~~~DaVIsalP~~~H~~VAkaAieaGkHvv~eky~~~e------~---~~L~-----e~-Ak~AGV~~m~e~-GlDPGid  710 (1042)
T PLN02819        647 SQVDVVISLLPASCHAVVAKACIELKKHLVTASYVSEE------M---SALD-----SK-AKEAGITILCEM-GLDPGID  710 (1042)
T ss_pred             cCCCEEEECCCchhhHHHHHHHHHcCCCEEECcCCHHH------H---HHHH-----HH-HHHcCCEEEECC-ccCHHHH
Confidence            7899999999853 32 444556777777887643221      0   0111     22 344442 22222 3668788


Q ss_pred             HHHHHHHHHHH
Q 024116          255 AMLLSNTLDSA  265 (272)
Q Consensus       255 amL~~n~v~a~  265 (272)
                      .|+..+++...
T Consensus       711 ~~lA~~~Id~~  721 (1042)
T PLN02819        711 HMMAMKMIDDA  721 (1042)
T ss_pred             HHHHHHHHHhh
Confidence            88888887765

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.19  E-value=0.024  Score=49.90  Aligned_cols=38  Identities=34%  Similarity=0.412  Sum_probs=33.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++.+|+.++..|+++|++|.++.|+.
T Consensus         4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~   41 (262)
T PRK13394          4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQ   41 (262)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCh
Confidence            36799999999988899999999999999998887654

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.18  E-value=0.031  Score=53.50  Aligned_cols=36  Identities=19%  Similarity=0.371  Sum_probs=31.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~  169 (272)
                      .+++++|+|+|.|+. |.+++.+|+..|. ++++++..
T Consensus        38 ~l~~~~VliiG~Ggl-G~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         38 RLHNARVLVIGAGGL-GCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             HhcCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEeCC
Confidence            468899999999996 9999999999995 89998743

>PRK08264 short chain dehydrogenase; Validated

Probab=95.18  E-value=0.031  Score=48.59  Aligned_cols=38  Identities=24%  Similarity=0.173  Sum_probs=34.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t  170 (272)
                      .+.+|+++|+|+++-+|+.++..|+++|+ +|+++.|+.
T Consensus         3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~   41 (238)
T PRK08264          3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP   41 (238)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh
Confidence            36789999999988899999999999999 999998764

>PRK07825 short chain dehydrogenase; Provisional

Probab=95.17  E-value=0.027  Score=50.30  Aligned_cols=38  Identities=26%  Similarity=0.293  Sum_probs=34.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++|++++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~   39 (273)
T PRK07825          2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDE   39 (273)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence            46799999999988899999999999999999887653

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.16  E-value=0.05  Score=48.17  Aligned_cols=54  Identities=11%  Similarity=0.095  Sum_probs=41.4

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCC---CE-EEEEeCCC----------------CCHhhhcCCCcEEEEecCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHH---AT-VSIVHALT----------------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~g---a~-V~v~~~~t----------------~~l~~~l~~ADIVIsa~g~  189 (272)
                      +..++.|||.|.+ |++++..|.+.+   .+ +++++++.                .+..+.++++|+||.+++.
T Consensus         3 ~~~kI~iIG~G~m-g~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~   76 (245)
T PRK07634          3 KKHRILFIGAGRM-AEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPP   76 (245)
T ss_pred             CCCeEEEECcCHH-HHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCH
Confidence            4678999999886 999999998776   23 66676531                2445677899999999984

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.15  E-value=0.052  Score=50.43  Aligned_cols=52  Identities=21%  Similarity=0.277  Sum_probs=41.9

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC--CEEEEEeCCCC-----------------------CHhhhcCCCcEEEEecCCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALTK-----------------------NPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~g--a~V~v~~~~t~-----------------------~l~~~l~~ADIVIsa~g~p  190 (272)
                      ||.|||+|. ||.+++..|+.+|  .+|.+++++..                       .-.+.+++||+||.++|.|
T Consensus         2 kI~IIGaG~-VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~   78 (308)
T cd05292           2 KVAIVGAGF-VGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN   78 (308)
T ss_pred             EEEEECCCH-HHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence            699999977 6999999999999  47999987531                       1125678999999999965

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=95.14  E-value=0.046  Score=50.99  Aligned_cols=77  Identities=27%  Similarity=0.356  Sum_probs=54.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC---CC------------------CHh--hhcCCCcEEEEecCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL---TK------------------NPE--QITSEADIVIAAAGVA  190 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~---t~------------------~l~--~~l~~ADIVIsa~g~p  190 (272)
                      ..|++|+|+|+|. +|..+++++...|++|+++.++   ..                  +..  .....+|+||.++|.+
T Consensus       171 ~~g~~vlI~G~G~-vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~  249 (355)
T cd08230         171 WNPRRALVLGAGP-IGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVP  249 (355)
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCH
Confidence            4799999999866 6999999999999998888762   10                  110  1123479999999976


Q ss_pred             cccc--CCCcCCCcEEEEeeeCC
Q 024116          191 NLVR--GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       191 ~~i~--~~~vk~g~vviDig~~~  211 (272)
                      ..+.  -+.++++-.++-+|...
T Consensus       250 ~~~~~~~~~l~~~G~~v~~G~~~  272 (355)
T cd08230         250 PLAFEALPALAPNGVVILFGVPG  272 (355)
T ss_pred             HHHHHHHHHccCCcEEEEEecCC
Confidence            5432  24567776777777654

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.14  E-value=0.034  Score=52.81  Aligned_cols=36  Identities=22%  Similarity=0.419  Sum_probs=31.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~  169 (272)
                      .+++++|+|+|.|+. |.+++.+|+..|. ++++++..
T Consensus        25 ~L~~~~VlivG~GGl-Gs~~a~~La~~Gvg~i~lvD~D   61 (355)
T PRK05597         25 SLFDAKVAVIGAGGL-GSPALLYLAGAGVGHITIIDDD   61 (355)
T ss_pred             HHhCCeEEEECCCHH-HHHHHHHHHHcCCCeEEEEeCC
Confidence            367899999999996 9999999999995 88888643

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.13  E-value=0.044  Score=53.34  Aligned_cols=35  Identities=29%  Similarity=0.253  Sum_probs=32.6

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++||++.|+|.|+. |++++.+|.++|++|+++++.
T Consensus         7 ~~~~~i~viG~G~~-G~~~a~~l~~~G~~v~~~D~~   41 (460)
T PRK01390          7 FAGKTVAVFGLGGS-GLATARALVAGGAEVIAWDDN   41 (460)
T ss_pred             cCCCEEEEEeecHh-HHHHHHHHHHCCCEEEEECCC
Confidence            67899999999998 999999999999999999865

>PRK07774 short chain dehydrogenase; Provisional

Probab=95.13  E-value=0.031  Score=48.86  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=34.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|++..|..
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~   40 (250)
T PRK07774          3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINA   40 (250)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46899999999988889999999999999999998763

>PRK06500 short chain dehydrogenase; Provisional

Probab=95.12  E-value=0.023  Score=49.63  Aligned_cols=36  Identities=28%  Similarity=0.361  Sum_probs=32.8

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++||+++|.|+++.+|+.++..|+++|++|++..|+
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~   39 (249)
T PRK06500          4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRD   39 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence            578999999999989999999999999999888765

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=95.12  E-value=0.043  Score=51.05  Aligned_cols=54  Identities=24%  Similarity=0.271  Sum_probs=47.8

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAG  188 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g  188 (272)
                      |+||+|+|||+|.- |++=+..|...|.+|++--|..              .+..+.+++||+|..-++
T Consensus        16 LkgK~iaIIGYGsQ-G~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~P   83 (338)
T COG0059          16 LKGKKVAIIGYGSQ-GHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLP   83 (338)
T ss_pred             hcCCeEEEEecChH-HHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCc
Confidence            68999999999886 9999999999999999987653              356799999999999887

>PRK06223 malate dehydrogenase; Reviewed

Probab=95.11  E-value=0.062  Score=49.53  Aligned_cols=53  Identities=26%  Similarity=0.404  Sum_probs=41.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHhhhcCCCcEEEEecCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t--------------------------~~l~~~l~~ADIVIsa~g~  189 (272)
                      +||.|||+|. +|..++..++..|. +|.+++...                          .+. +.+++||+||.++|.
T Consensus         3 ~KI~VIGaG~-vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~   80 (307)
T PRK06223          3 KKISIIGAGN-VGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGV   80 (307)
T ss_pred             CEEEEECCCH-HHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCC
Confidence            5899999966 59999999998874 888887542                          122 568999999999886


Q ss_pred             Cc
Q 024116          190 AN  191 (272)
Q Consensus       190 p~  191 (272)
                      |.
T Consensus        81 p~   82 (307)
T PRK06223         81 PR   82 (307)
T ss_pred             CC
Confidence            54

>PRK08589 short chain dehydrogenase; Validated

Probab=95.11  E-value=0.025  Score=50.73  Aligned_cols=37  Identities=27%  Similarity=0.315  Sum_probs=33.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~   39 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA   39 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            3689999999998888999999999999999998775

>PRK07814 short chain dehydrogenase; Provisional

Probab=95.11  E-value=0.03  Score=49.86  Aligned_cols=38  Identities=24%  Similarity=0.232  Sum_probs=34.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~   44 (263)
T PRK07814          7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTE   44 (263)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999999999899999999999999999888753

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=95.11  E-value=0.023  Score=50.44  Aligned_cols=37  Identities=16%  Similarity=0.233  Sum_probs=33.6

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSA   40 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            6899999999988889999999999999999988753

>PRK07856 short chain dehydrogenase; Provisional

Probab=95.10  E-value=0.04  Score=48.56  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=33.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~   39 (252)
T PRK07856          3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRR   39 (252)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999889999999999999999888764

>PRK06179 short chain dehydrogenase; Provisional

Probab=95.10  E-value=0.049  Score=48.42  Aligned_cols=35  Identities=29%  Similarity=0.131  Sum_probs=31.9

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++++++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~   37 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRN   37 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46889999999889999999999999999988876

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=95.09  E-value=0.061  Score=49.05  Aligned_cols=35  Identities=26%  Similarity=0.116  Sum_probs=31.0

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +||+++|.|++|.+|+.++..|+++|.+|+++.+.
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~   37 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRD   37 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcC
Confidence            47899999998889999999999999998877654

>PRK05876 short chain dehydrogenase; Provisional

Probab=95.09  E-value=0.022  Score=51.46  Aligned_cols=37  Identities=27%  Similarity=0.344  Sum_probs=33.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus         3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~   39 (275)
T PRK05876          3 GFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVD   39 (275)
T ss_pred             CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            3689999999998889999999999999999988765

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=95.08  E-value=0.054  Score=47.90  Aligned_cols=36  Identities=25%  Similarity=0.252  Sum_probs=32.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      +++||.++|.|+++-+|++++..|+++|++|..+++
T Consensus         7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~   42 (253)
T PRK08993          7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINI   42 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecC
Confidence            578999999999988899999999999999887654

>cd08293 PTGR2 Prostaglandin reductase

Probab=95.07  E-value=0.06  Score=49.60  Aligned_cols=74  Identities=14%  Similarity=0.068  Sum_probs=50.4

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC--------------------CCHhhhc-----CCCcEEEEecCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------KNPEQIT-----SEADIVIAAAGV  189 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t--------------------~~l~~~l-----~~ADIVIsa~g~  189 (272)
                      |.+|+|.|+++.+|..+++++..+|+ .|+++.++.                    .++.+.+     +..|+|+.++|.
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~  234 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG  234 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence            48999999966679999999999998 787765432                    1121111     247888888886


Q ss_pred             Cccc-cCCCcCCCcEEEEeee
Q 024116          190 ANLV-RGSWLKPGAVVLDVGT  209 (272)
Q Consensus       190 p~~i-~~~~vk~g~vviDig~  209 (272)
                      +.+- .-+.++++..++.+|.
T Consensus       235 ~~~~~~~~~l~~~G~iv~~G~  255 (345)
T cd08293         235 EISDTVISQMNENSHIILCGQ  255 (345)
T ss_pred             HHHHHHHHHhccCCEEEEEee
Confidence            5431 1235677777788874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=95.06  E-value=0.066  Score=49.79  Aligned_cols=53  Identities=28%  Similarity=0.418  Sum_probs=41.6

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHhhhcCCCcEEEEecCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t--------------------------~~l~~~l~~ADIVIsa~g~  189 (272)
                      +||.|||+|. ||..+|..|+.+|. +|++++...                          .++ +.+++||+||.+.|.
T Consensus         2 ~KV~VIGaG~-vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~-~~~~~aDiVIitag~   79 (305)
T TIGR01763         2 KKISVIGAGF-VGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNY-ADTANSDIVVITAGL   79 (305)
T ss_pred             CEEEEECcCH-HHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCH-HHhCCCCEEEEcCCC
Confidence            4799999977 59999999999874 888887531                          233 347999999999996


Q ss_pred             Cc
Q 024116          190 AN  191 (272)
Q Consensus       190 p~  191 (272)
                      |.
T Consensus        80 p~   81 (305)
T TIGR01763        80 PR   81 (305)
T ss_pred             CC
Confidence            53

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.06  E-value=0.034  Score=48.67  Aligned_cols=37  Identities=32%  Similarity=0.422  Sum_probs=33.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++|+++|.|+++.+|+.++..|+++|++|.++.|+.
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~   38 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLND   38 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence            5789999999988899999999999999999887753

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=95.05  E-value=0.035  Score=49.73  Aligned_cols=52  Identities=15%  Similarity=0.172  Sum_probs=42.0

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------CHhhhcCCC--cEEEEecCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------NPEQITSEA--DIVIAAAGV  189 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~------~l~~~l~~A--DIVIsa~g~  189 (272)
                      +++|+|++|.+|+.++..|.++|.+|+++.|..-      ++.+.++.+  |+||...+.
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~d~~~~~~~~~~~~~~~~d~vi~~a~~   60 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQLDLTDPEALERLLRAIRPDAVVNTAAY   60 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCcccCCCCHHHHHHHHHhCCCCEEEECCcc
Confidence            5899999888999999999999999999887642      244556655  999987764

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK09414 glutamate dehydrogenase; Provisional

Probab=95.05  E-value=0.052  Score=53.19  Aligned_cols=51  Identities=27%  Similarity=0.223  Sum_probs=42.8

Q ss_pred             cccCCHHHHHHH----HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEE
Q 024116          115 FIPCTPKGCIEL----LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV  166 (272)
Q Consensus       115 ~~p~Ta~g~~~~----l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~  166 (272)
                      -.+.|++|+...    +++.+.+++|++|+|.|.|+ ||+.++..|.+.|++|+.+
T Consensus       207 r~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGn-VG~~~A~~L~~~GakVVav  261 (445)
T PRK09414        207 RTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGN-VAIYAIEKAQQLGAKVVTC  261 (445)
T ss_pred             CCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEE
Confidence            347888886555    45568899999999999988 5999999999999987766

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=95.05  E-value=0.024  Score=50.77  Aligned_cols=39  Identities=28%  Similarity=0.368  Sum_probs=34.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .++++|+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~   44 (278)
T PRK08277          6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQ   44 (278)
T ss_pred             eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357899999999988889999999999999999988753

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.05  E-value=0.058  Score=53.21  Aligned_cols=36  Identities=22%  Similarity=0.366  Sum_probs=32.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +.+|++.|+|.|+. |++++.+|.++|+.|+.++...
T Consensus         5 ~~~~~i~v~G~G~s-G~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          5 LQGPMVLVLGLGES-GLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             cCCCEEEEEeecHh-HHHHHHHHHHCCCEEEEEcCCC
Confidence            57899999999997 9999999999999999998643

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=95.04  E-value=0.033  Score=49.51  Aligned_cols=37  Identities=16%  Similarity=0.251  Sum_probs=33.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.+
T Consensus         4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~   40 (260)
T PRK08416          4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYN   40 (260)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence            3578999999999888999999999999999988754

>PRK07576 short chain dehydrogenase; Provisional

Probab=95.03  E-value=0.032  Score=49.88  Aligned_cols=37  Identities=27%  Similarity=0.413  Sum_probs=33.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++++|+++|.|+++-+|+.++..|+.+|++|+++.|+
T Consensus         6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~   42 (264)
T PRK07576          6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRS   42 (264)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999998889999999999999999999875

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.03  E-value=0.06  Score=52.20  Aligned_cols=124  Identities=18%  Similarity=0.204  Sum_probs=67.1

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC-HhhhcCC--CcEEEEecCCCccccCCCc-CCCcEEEEeee
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN-PEQITSE--ADIVIAAAGVANLVRGSWL-KPGAVVLDVGT  209 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~-l~~~l~~--ADIVIsa~g~p~~i~~~~v-k~g~vviDig~  209 (272)
                      +.+|+++|+|.|++ |++++..|+++|+.|++.+..... ..+.++.  .-+-+. .|..   +...+ ....+|+--|+
T Consensus         3 ~~~~~~~v~G~g~~-G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~-~g~~---~~~~~~~~d~vv~spgi   77 (445)
T PRK04308          3 FQNKKILVAGLGGT-GISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFY-TGRL---KDALDNGFDILALSPGI   77 (445)
T ss_pred             CCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEE-eCCC---CHHHHhCCCEEEECCCC
Confidence            57899999999997 999999999999999998764321 1111211  011110 1110   00011 12345555555


Q ss_pred             CCCCCCCCCCCCCCceEecccchhh-hhh----hceEeccCCCcccHHHHHHHHHHHHHHH
Q 024116          210 CPVDVSVDPSCEYGYRLMGDVCYEE-AMR----LASVITPVPGGVGPMTVAMLLSNTLDSA  265 (272)
Q Consensus       210 ~~~~~~~~~~~~~~~k~~Gdvd~~~-~~~----~~~~~tpvpGGvGp~T~amL~~n~v~a~  265 (272)
                      ++.....-.....+-.+.++.++-. +.+    +..+   |-|--|.=|+..|+.++++..
T Consensus        78 ~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~---ITGT~GKTTTt~li~~iL~~~  135 (445)
T PRK04308         78 SERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIA---ITGSNGKTTVTSLVGYLCIKC  135 (445)
T ss_pred             CCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEE---EECCCcHHHHHHHHHHHHHHc
Confidence            5431000000001235666666522 111    2233   557788999999999888653

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=95.00  E-value=0.033  Score=55.36  Aligned_cols=32  Identities=16%  Similarity=0.161  Sum_probs=29.4

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++|.|||+|-+ |.++|..|+..|..|++.+++
T Consensus         6 ~kV~VIGaG~M-G~gIA~~la~aG~~V~l~d~~   37 (503)
T TIGR02279         6 VTVAVIGAGAM-GAGIAQVAASAGHQVLLYDIR   37 (503)
T ss_pred             cEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCC
Confidence            67999999876 999999999999999999876

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.00  E-value=0.038  Score=48.95  Aligned_cols=37  Identities=22%  Similarity=0.267  Sum_probs=33.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~   41 (251)
T PRK12481          5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVA   41 (251)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCc
Confidence            5789999999999889999999999999999888654

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.99  E-value=0.034  Score=48.28  Aligned_cols=38  Identities=24%  Similarity=0.329  Sum_probs=34.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++.+|..+++.|.++|++|++..|+.
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~   39 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE   39 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            36799999999999899999999999999999888764

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=94.98  E-value=0.027  Score=49.75  Aligned_cols=37  Identities=22%  Similarity=0.224  Sum_probs=33.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +.+|+++|.|+++.+|+.++..|+++|++|+++.|+.
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~   40 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKP   40 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCH
Confidence            6789999999988899999999999999999887653

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=94.96  E-value=0.058  Score=50.57  Aligned_cols=95  Identities=21%  Similarity=0.242  Sum_probs=59.4

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHh--
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPE--  174 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------~~l~--  174 (272)
                      +|++..-.+.+|....---.|.+|+|.|+++.||..+.+++...|+++.+.-++.                   .++.  
T Consensus       123 l~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~  202 (326)
T COG0604         123 LPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQ  202 (326)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHH
Confidence            3555555666666532222399999999888899999999999996533333221                   1122  


Q ss_pred             --hhc--CCCcEEEEecCCCccc-cCCCcCCCcEEEEeeeC
Q 024116          175 --QIT--SEADIVIAAAGVANLV-RGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       175 --~~l--~~ADIVIsa~g~p~~i-~~~~vk~g~vviDig~~  210 (272)
                        +.+  +..|+|+..+|.+.+- .-..++++-.++.+|..
T Consensus       203 v~~~t~g~gvDvv~D~vG~~~~~~~l~~l~~~G~lv~ig~~  243 (326)
T COG0604         203 VRELTGGKGVDVVLDTVGGDTFAASLAALAPGGRLVSIGAL  243 (326)
T ss_pred             HHHHcCCCCceEEEECCCHHHHHHHHHHhccCCEEEEEecC
Confidence              233  2578888888866542 23345555566666654

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=94.95  E-value=0.04  Score=56.90  Aligned_cols=73  Identities=27%  Similarity=0.322  Sum_probs=55.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC--CEEEEEeCCC----------------CCHhhhcCCCcEEEEecCCCc---ccc-
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALT----------------KNPEQITSEADIVIAAAGVAN---LVR-  194 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~g--a~V~v~~~~t----------------~~l~~~l~~ADIVIsa~g~p~---~i~-  194 (272)
                      ++|.|||.|.+ |.+++..|.+.|  .+|++++++.                .++.+.+.++|+||.+++...   .+. 
T Consensus         4 ~~I~IIG~G~m-G~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~   82 (735)
T PRK14806          4 GRVVVIGLGLI-GGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLAMEKVLAD   82 (735)
T ss_pred             cEEEEEeeCHH-HHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHHHHHHHHH
Confidence            68999999885 999999999988  4788888753                234556789999999998432   121 


Q ss_pred             -CCCcCCCcEEEEeeeC
Q 024116          195 -GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       195 -~~~vk~g~vviDig~~  210 (272)
                       ...++++.+|+|++..
T Consensus        83 l~~~~~~~~ii~d~~sv   99 (735)
T PRK14806         83 LKPLLSEHAIVTDVGST   99 (735)
T ss_pred             HHHhcCCCcEEEEcCCC
Confidence             1245778899999864

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=94.95  E-value=0.046  Score=47.36  Aligned_cols=79  Identities=23%  Similarity=0.373  Sum_probs=47.8

Q ss_pred             CccceEEEEc----------------CCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------CHhhhc
Q 024116          134 IMGKNAVVIG----------------RSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQIT  177 (272)
Q Consensus       134 l~gk~v~ViG----------------~g~~vG~~la~~L~~~ga~V~v~~~~t~--------------------~l~~~l  177 (272)
                      |+||+|+|-+                .||-.|..+|..+..+||+|++++....                    .+.+.+
T Consensus         1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~~   80 (185)
T PF04127_consen    1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKELL   80 (185)
T ss_dssp             -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHHG
T ss_pred             CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccccccceEEEecchhhhhhhhcccc
Confidence            4688888875                3344699999999999999999987631                    224667


Q ss_pred             CCCcEEEEecCCCccc----cCCCcCC---CcEEEEeeeCCC
Q 024116          178 SEADIVIAAAGVANLV----RGSWLKP---GAVVLDVGTCPV  212 (272)
Q Consensus       178 ~~ADIVIsa~g~p~~i----~~~~vk~---g~vviDig~~~~  212 (272)
                      +++|++|.+.-...+-    ...-+++   ....+.+--+|+
T Consensus        81 ~~~Di~I~aAAVsDf~p~~~~~~KIkK~~~~~l~l~L~~~pk  122 (185)
T PF04127_consen   81 PSADIIIMAAAVSDFRPEEPAEGKIKKSSGDELTLELKPTPK  122 (185)
T ss_dssp             GGGSEEEE-SB--SEEESCHHSS-G---TT-CEEEEEEE-GG
T ss_pred             CcceeEEEecchhheeehhccccccccccCcceEEEEEeChH
Confidence            8899999777665542    2344653   356777776664

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>PLN02427 UDP-apiose/xylose synthase

Probab=94.92  E-value=0.056  Score=51.15  Aligned_cols=58  Identities=21%  Similarity=0.221  Sum_probs=45.0

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhC-CCEEEEEeCCCC----------------------------CHhhhcCCCc
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALTK----------------------------NPEQITSEAD  181 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~-ga~V~v~~~~t~----------------------------~l~~~l~~AD  181 (272)
                      +..++.++|+|.|+.|.+|+.++..|+++ |.+|+.+.+...                            .+.+.++.+|
T Consensus         9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d   88 (386)
T PLN02427          9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD   88 (386)
T ss_pred             CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence            45677789999999999999999999998 488888875321                            1245567789


Q ss_pred             EEEEecC
Q 024116          182 IVIAAAG  188 (272)
Q Consensus       182 IVIsa~g  188 (272)
                      +||...+
T Consensus        89 ~ViHlAa   95 (386)
T PLN02427         89 LTINLAA   95 (386)
T ss_pred             EEEEccc
Confidence            9997665

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=94.90  E-value=0.048  Score=50.86  Aligned_cols=59  Identities=20%  Similarity=0.111  Sum_probs=45.3

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------------CHhhhcCCCcEEE
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------------NPEQITSEADIVI  184 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~--------------------------~l~~~l~~ADIVI  184 (272)
                      +.+-.+++++|.|++|.+|+.++..|+++|.+|+++.+...                          .+.+.++..|.||
T Consensus         5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   84 (353)
T PLN02896          5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVF   84 (353)
T ss_pred             ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence            34557899999999998999999999999999988765321                          1234456789999


Q ss_pred             EecCC
Q 024116          185 AAAGV  189 (272)
Q Consensus       185 sa~g~  189 (272)
                      ...+.
T Consensus        85 h~A~~   89 (353)
T PLN02896         85 HVAAS   89 (353)
T ss_pred             ECCcc
Confidence            77664

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=94.89  E-value=0.047  Score=51.65  Aligned_cols=76  Identities=24%  Similarity=0.302  Sum_probs=52.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhC-CCEEE-EEeCCC---C--------------------CHhhhcCCCcEEEEecCCCc
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRH-HATVS-IVHALT---K--------------------NPEQITSEADIVIAAAGVAN  191 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~-ga~V~-v~~~~t---~--------------------~l~~~l~~ADIVIsa~g~p~  191 (272)
                      .+|.|+|++|.+|+-++..|.++ +.++. ++.++.   +                    +..+.+.++|+||.|++...
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~   80 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV   80 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence            37999999888999999999877 46766 544321   1                    11233458999999997432


Q ss_pred             --cccCCCcCCCcEEEEeeeCCC
Q 024116          192 --LVRGSWLKPGAVVLDVGTCPV  212 (272)
Q Consensus       192 --~i~~~~vk~g~vviDig~~~~  212 (272)
                        -+-+...+.|..|||++....
T Consensus        81 s~~~~~~~~~~G~~VIDlS~~fR  103 (346)
T TIGR01850        81 SAELAPELLAAGVKVIDLSADFR  103 (346)
T ss_pred             HHHHHHHHHhCCCEEEeCChhhh
Confidence              133334567899999987643

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=94.88  E-value=0.046  Score=48.44  Aligned_cols=37  Identities=24%  Similarity=0.308  Sum_probs=33.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|.++|+.|.++.++
T Consensus         4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~   40 (261)
T PRK08936          4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRS   40 (261)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999999999998887664

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.88  E-value=0.034  Score=50.66  Aligned_cols=32  Identities=19%  Similarity=0.162  Sum_probs=28.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++|.|||.|.+ |.+++..|+..|.+|++++++
T Consensus         4 ~kI~VIG~G~m-G~~ia~~la~~g~~V~~~d~~   35 (282)
T PRK05808          4 QKIGVIGAGTM-GNGIAQVCAVAGYDVVMVDIS   35 (282)
T ss_pred             cEEEEEccCHH-HHHHHHHHHHCCCceEEEeCC
Confidence            57999999885 999999999999999999743

>PRK06114 short chain dehydrogenase; Provisional

Probab=94.88  E-value=0.049  Score=48.15  Aligned_cols=38  Identities=24%  Similarity=0.309  Sum_probs=34.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||.++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~   42 (254)
T PRK06114          5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRT   42 (254)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence            57899999999998899999999999999999988753

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=94.87  E-value=0.033  Score=52.90  Aligned_cols=70  Identities=23%  Similarity=0.317  Sum_probs=47.7

Q ss_pred             EEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC-------------------------CCHhhhcCCCcEEEEecCCCc
Q 024116          139 AVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-------------------------KNPEQITSEADIVIAAAGVAN  191 (272)
Q Consensus       139 v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t-------------------------~~l~~~l~~ADIVIsa~g~p~  191 (272)
                      |+|+|+| .+|+.++..|.+++-  +|+++.|+.                         .+|.+.++++|+||+++|...
T Consensus         1 IlvlG~G-~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~   79 (386)
T PF03435_consen    1 ILVLGAG-RVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFF   79 (386)
T ss_dssp             EEEE--S-HHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGG
T ss_pred             CEEEcCc-HHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccch
Confidence            6899995 469999999998873  799998762                         135678999999999998541


Q ss_pred             -c-ccCCCcCCCcEEEEeee
Q 024116          192 -L-VRGSWLKPGAVVLDVGT  209 (272)
Q Consensus       192 -~-i~~~~vk~g~vviDig~  209 (272)
                       . +-...++.|.-.+|..+
T Consensus        80 ~~~v~~~~i~~g~~yvD~~~   99 (386)
T PF03435_consen   80 GEPVARACIEAGVHYVDTSY   99 (386)
T ss_dssp             HHHHHHHHHHHT-EEEESS-
T ss_pred             hHHHHHHHHHhCCCeeccch
Confidence             1 22234566778888554

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.86  E-value=0.14  Score=44.59  Aligned_cols=94  Identities=28%  Similarity=0.362  Sum_probs=62.6

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------CHhhh-
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------NPEQI-  176 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------------~l~~~-  176 (272)
                      |+....++..+.....-..|.+++|.|.|. +|..+++++...|++|+.+.++..                   +..+. 
T Consensus       116 ~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  194 (271)
T cd05188         116 PEPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEEL  194 (271)
T ss_pred             cCHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHH
Confidence            333344455555554445799999999999 799999999999999888765421                   11111 


Q ss_pred             ----cCCCcEEEEecCCCccc--cCCCcCCCcEEEEeeeCC
Q 024116          177 ----TSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       177 ----l~~ADIVIsa~g~p~~i--~~~~vk~g~vviDig~~~  211 (272)
                          -+..|++|.++|.+..+  -.+.++++..+++++...
T Consensus       195 ~~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~~  235 (271)
T cd05188         195 RLTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTS  235 (271)
T ss_pred             HHhcCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEccCC
Confidence                24579999888863322  224566777788887554

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=94.85  E-value=0.054  Score=51.87  Aligned_cols=40  Identities=20%  Similarity=0.137  Sum_probs=35.1

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +...++++++|+|++|.+|+.++..|.++|.+|+++.|..
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~   94 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK   94 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence            4567899999999999999999999999999998887653

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=94.85  E-value=0.048  Score=47.12  Aligned_cols=38  Identities=32%  Similarity=0.368  Sum_probs=33.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++.+|+++|.|+++-+|+.++..|+++|.+|+++.|+.
T Consensus         2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~   39 (246)
T PRK05653          2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNE   39 (246)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            35689999999998899999999999999999998764

>PRK07326 short chain dehydrogenase; Provisional

Probab=94.84  E-value=0.03  Score=48.54  Aligned_cols=37  Identities=24%  Similarity=0.273  Sum_probs=33.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +.+++++|+|+++-+|+.+++.|+++|++|.++.|+.
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~   40 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQ   40 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence            4689999999988899999999999999999998753

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.84  E-value=0.04  Score=48.01  Aligned_cols=38  Identities=21%  Similarity=0.411  Sum_probs=34.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++++++++|.|+++.+|+.++..|+++|++|.+++|+.
T Consensus         4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~   41 (239)
T PRK07666          4 SLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTE   41 (239)
T ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35789999999998899999999999999999998764

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.84  E-value=0.078  Score=46.32  Aligned_cols=36  Identities=19%  Similarity=0.251  Sum_probs=31.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      ++++++++|.|+++-+|+.++..|+++|++|++..+
T Consensus         3 ~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~   38 (252)
T PRK06077          3 SLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAK   38 (252)
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence            357899999999998999999999999999876543

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=94.84  E-value=0.064  Score=45.77  Aligned_cols=31  Identities=19%  Similarity=0.314  Sum_probs=26.9

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~  169 (272)
                      +|+|+|.|+. |..++..|.+.|. ++++++..
T Consensus         1 ~VlViG~Ggl-Gs~ia~~La~~Gvg~i~lvD~D   32 (174)
T cd01487           1 KVGIAGAGGL-GSNIAVLLARSGVGNLKLVDFD   32 (174)
T ss_pred             CEEEECcCHH-HHHHHHHHHHcCCCeEEEEeCC
Confidence            5899999995 9999999999997 69998744

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK09291 short chain dehydrogenase; Provisional

Probab=94.82  E-value=0.048  Score=47.91  Aligned_cols=34  Identities=21%  Similarity=0.225  Sum_probs=30.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~   35 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQI   35 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            6789999999889999999999999999888764

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=94.82  E-value=0.041  Score=54.74  Aligned_cols=32  Identities=22%  Similarity=0.252  Sum_probs=29.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++|.|||+|-+ |.++|..|+..|..|++.+++
T Consensus         8 ~~V~VIGaG~M-G~gIA~~la~aG~~V~l~D~~   39 (507)
T PRK08268          8 ATVAVIGAGAM-GAGIAQVAAQAGHTVLLYDAR   39 (507)
T ss_pred             CEEEEECCCHH-HHHHHHHHHhCCCeEEEEeCC
Confidence            68999999875 999999999999999999865

>PRK06139 short chain dehydrogenase; Provisional

Probab=94.81  E-value=0.025  Score=52.92  Aligned_cols=38  Identities=21%  Similarity=0.262  Sum_probs=34.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++++|+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~   41 (330)
T PRK06139          4 PLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDE   41 (330)
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46899999999988889999999999999999998764

>cd00704 MDH Malate dehydrogenase

Probab=94.80  E-value=0.079  Score=49.75  Aligned_cols=54  Identities=13%  Similarity=0.324  Sum_probs=41.2

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC-C------EEEEEeCCC--------------------------CCHhhhcCCCcEEE
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHH-A------TVSIVHALT--------------------------KNPEQITSEADIVI  184 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~g-a------~V~v~~~~t--------------------------~~l~~~l~~ADIVI  184 (272)
                      ||+|+|++|.||..++..|...+ +      ++.+.+...                          .+..+.+++||+||
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV   81 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI   81 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence            79999995557999999998766 2      266666542                          23458899999999


Q ss_pred             EecCCCc
Q 024116          185 AAAGVAN  191 (272)
Q Consensus       185 sa~g~p~  191 (272)
                      .+.|.|.
T Consensus        82 itAG~~~   88 (323)
T cd00704          82 LVGAFPR   88 (323)
T ss_pred             EeCCCCC
Confidence            9999653

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14030 glutamate dehydrogenase; Provisional

Probab=94.78  E-value=0.082  Score=51.79  Aligned_cols=50  Identities=24%  Similarity=0.294  Sum_probs=42.3

Q ss_pred             ccCCHHHHHH----HHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEE
Q 024116          116 IPCTPKGCIE----LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV  166 (272)
Q Consensus       116 ~p~Ta~g~~~----~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~  166 (272)
                      .++|++|++.    ++++.+.+++|++|+|=|.|. ||..++..|.+.|++|+.+
T Consensus       204 ~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGn-VG~~aA~~L~e~GakvVav  257 (445)
T PRK14030        204 PEATGFGALYFVHQMLETKGIDIKGKTVAISGFGN-VAWGAATKATELGAKVVTI  257 (445)
T ss_pred             CCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEE
Confidence            4679998654    455678899999999999988 5999999999999987774

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=94.76  E-value=0.13  Score=46.62  Aligned_cols=93  Identities=15%  Similarity=0.099  Sum_probs=59.7

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------CH----
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------NP----  173 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------------~l----  173 (272)
                      ++.+..++..++... --.|.+++|.|+++.+|..+++++..+|++|+++.++.+                   ++    
T Consensus       122 ~~~~~ta~~~~~~~~-~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  200 (324)
T cd08292         122 IAMPLSALMLLDFLG-VKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKV  200 (324)
T ss_pred             cccHHHHHHHHHhhC-CCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHH
Confidence            343444444454322 236899999999887899999999999998777644321                   11    


Q ss_pred             hhhc--CCCcEEEEecCCCccc-cCCCcCCCcEEEEeeeC
Q 024116          174 EQIT--SEADIVIAAAGVANLV-RGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       174 ~~~l--~~ADIVIsa~g~p~~i-~~~~vk~g~vviDig~~  210 (272)
                      .+..  +..|+|+.++|.+..- --..++++..++.+|..
T Consensus       201 ~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~  240 (324)
T cd08292         201 REAAGGAPISVALDSVGGKLAGELLSLLGEGGTLVSFGSM  240 (324)
T ss_pred             HHHhCCCCCcEEEECCCChhHHHHHHhhcCCcEEEEEecC
Confidence            1122  2489999888865321 12345677778888753

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PRK05875 short chain dehydrogenase; Provisional

Probab=94.74  E-value=0.031  Score=49.90  Aligned_cols=37  Identities=22%  Similarity=0.154  Sum_probs=33.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++++|+++|.|+++.+|+.++..|.++|++|+++.|+
T Consensus         4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~   40 (276)
T PRK05875          4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRN   40 (276)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4689999999998888999999999999999988765

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.73  E-value=0.033  Score=48.59  Aligned_cols=37  Identities=16%  Similarity=0.242  Sum_probs=32.9

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++|++++|.|+++.+|+.++..|.++|++|+++.|+.
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~   39 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ   39 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            6899999999977789999999999999998887753

>PRK12939 short chain dehydrogenase; Provisional

Probab=94.72  E-value=0.04  Score=48.02  Aligned_cols=37  Identities=30%  Similarity=0.366  Sum_probs=32.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++|+++|.|+++.+|+.++..|.++|++|.++.|+
T Consensus         4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~   40 (250)
T PRK12939          4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGL   40 (250)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCC
Confidence            3679999999998888999999999999998888765

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=94.71  E-value=0.041  Score=50.27  Aligned_cols=40  Identities=33%  Similarity=0.373  Sum_probs=36.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK  171 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~  171 (272)
                      ..++||.++|-|++.-+|+++|..|++.||+|+++.|+.+
T Consensus         4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~   43 (270)
T KOG0725|consen    4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEE   43 (270)
T ss_pred             ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4589999999999888899999999999999999998753

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=94.70  E-value=0.058  Score=50.74  Aligned_cols=63  Identities=11%  Similarity=0.129  Sum_probs=47.5

Q ss_pred             HHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhhcCCCcEEEEecCCCcc---c-c--CCCcCCCcE
Q 024116          149 GLPTSLLLQRHHATVSIVHALT-------------------KNPEQITSEADIVIAAAGVANL---V-R--GSWLKPGAV  203 (272)
Q Consensus       149 G~~la~~L~~~ga~V~v~~~~t-------------------~~l~~~l~~ADIVIsa~g~p~~---i-~--~~~vk~g~v  203 (272)
                      |+++|..|++.|.+|++.+++.                   .+..+.++++|+||+.++.+.-   + .  .+.+++|++
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaI  111 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAV  111 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCE
Confidence            7788888888888888886542                   2456888999999999996652   2 2  235688999


Q ss_pred             EEEeeeCC
Q 024116          204 VLDVGTCP  211 (272)
Q Consensus       204 viDig~~~  211 (272)
                      |||.++..
T Consensus       112 VID~STIs  119 (341)
T TIGR01724       112 ICNTCTVS  119 (341)
T ss_pred             EEECCCCC
Confidence            99998653

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=94.70  E-value=0.055  Score=47.76  Aligned_cols=37  Identities=27%  Similarity=0.292  Sum_probs=33.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~   41 (260)
T PRK12823          5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRS   41 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            3689999999998889999999999999999998875

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=94.69  E-value=0.086  Score=49.05  Aligned_cols=58  Identities=17%  Similarity=0.241  Sum_probs=50.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCc
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN  191 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~  191 (272)
                      +-..+++--||-|.+ |.+++..|.+.|.+|+|.+|+.              ....|..+++|+||+.++.|.
T Consensus        32 ~~s~~~iGFIGLG~M-G~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~  103 (327)
T KOG0409|consen   32 TPSKTRIGFIGLGNM-GSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPK  103 (327)
T ss_pred             CcccceeeEEeeccc-hHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChH
Confidence            335788999999887 9999999999999999999874              345788999999999999765

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=94.69  E-value=0.06  Score=50.99  Aligned_cols=54  Identities=11%  Similarity=0.055  Sum_probs=42.7

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------C------HhhhcCCCcEEEEecC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------N------PEQITSEADIVIAAAG  188 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~---------------~------l~~~l~~ADIVIsa~g  188 (272)
                      ++|+|+|.|+.|.+|+.++..|.++|.+|+.+.|...               +      +.+.++.+|+||...+
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa   94 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAA   94 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEccc
Confidence            6899999999898999999999999999998875321               1      1234567899997665

>PRK12743 oxidoreductase; Provisional

Probab=94.68  E-value=0.081  Score=46.78  Aligned_cols=33  Identities=21%  Similarity=0.310  Sum_probs=30.2

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      +|+++|.|+++-+|+.++..|+++|++|.++.+
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~   34 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWH   34 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence            689999999999999999999999999988754

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.67  E-value=0.042  Score=47.72  Aligned_cols=38  Identities=34%  Similarity=0.429  Sum_probs=33.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEE-eCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV-HALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~-~~~t  170 (272)
                      ++.+|+++|+|+++.+|+.++..|+++|++|++. .|+.
T Consensus         2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~   40 (247)
T PRK05565          2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINE   40 (247)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence            4678999999998888999999999999999888 6654

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=94.67  E-value=0.053  Score=42.99  Aligned_cols=74  Identities=22%  Similarity=0.210  Sum_probs=47.5

Q ss_pred             eEEEEcCCcccHHHHHHHHHhC-CCEEEEE-eCCC---CC-------H--------h-hhc--CCCcEEEEecCCCcc--
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRH-HATVSIV-HALT---KN-------P--------E-QIT--SEADIVIAAAGVANL--  192 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~-ga~V~v~-~~~t---~~-------l--------~-~~l--~~ADIVIsa~g~p~~--  192 (272)
                      ++.|+|+++.+|+.++..|... +.+++.+ .++.   +.       +        . +.+  .++|+||.+++....  
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~   80 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE   80 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence            4789997776799888888874 6665555 3221   00       0        0 112  478999999985421  


Q ss_pred             -cc--CCCcCCCcEEEEeeeCC
Q 024116          193 -VR--GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       193 -i~--~~~vk~g~vviDig~~~  211 (272)
                       +.  ....++|.++||++...
T Consensus        81 ~~~~~~~~~~~g~~viD~s~~~  102 (122)
T smart00859       81 IAPLLPKAAEAGVKVIDLSSAF  102 (122)
T ss_pred             HHHHHHhhhcCCCEEEECCccc
Confidence             11  22357899999999664

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.65  E-value=0.074  Score=48.57  Aligned_cols=52  Identities=12%  Similarity=0.104  Sum_probs=40.4

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC----CEEEEEeCCC-----------------CCHhhhcCCCcEEEEecCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHH----ATVSIVHALT-----------------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~g----a~V~v~~~~t-----------------~~l~~~l~~ADIVIsa~g~  189 (272)
                      .++.|||.|.+ |.+++..|.+.|    .+|.+++++.                 .+..+.++++|+||.+++.
T Consensus         2 ~~I~iIG~G~m-G~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp   74 (277)
T PRK06928          2 EKIGFIGYGSM-ADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP   74 (277)
T ss_pred             CEEEEECccHH-HHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH
Confidence            36899999885 999999999887    5788877642                 2334557889999999874

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=94.64  E-value=0.048  Score=46.28  Aligned_cols=37  Identities=24%  Similarity=0.406  Sum_probs=31.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+|+|||.|.. +--++..|++.|.+|+++.|+.
T Consensus       164 ~~~~k~V~VVG~G~S-A~d~a~~l~~~g~~V~~~~R~~  200 (203)
T PF13738_consen  164 DFKGKRVVVVGGGNS-AVDIAYALAKAGKSVTLVTRSP  200 (203)
T ss_dssp             GCTTSEEEEE--SHH-HHHHHHHHTTTCSEEEEEESS-
T ss_pred             hcCCCcEEEEcChHH-HHHHHHHHHhhCCEEEEEecCC
Confidence            578999999999998 9999999999999999999864

...

>PLN02214 cinnamoyl-CoA reductase

Probab=94.64  E-value=0.083  Score=49.34  Aligned_cols=36  Identities=19%  Similarity=0.070  Sum_probs=31.9

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++|+|+|.|++|.+|+.++..|+++|..|+.+.|.
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~   43 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRN   43 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            578999999998889999999999999998877653

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.62  E-value=0.06  Score=47.96  Aligned_cols=37  Identities=14%  Similarity=0.258  Sum_probs=32.3

Q ss_pred             CCCccceEEEEcCC---cccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g---~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||.++|.|++   + +|++++..|+++|++|.++.|+
T Consensus         6 ~~~~~k~~lItGas~g~G-IG~a~a~~la~~G~~v~l~~r~   45 (258)
T PRK07533          6 LPLAGKRGLVVGIANEQS-IAWGCARAFRALGAELAVTYLN   45 (258)
T ss_pred             cccCCCEEEEECCCCCCc-HHHHHHHHHHHcCCEEEEEeCC
Confidence            35789999999986   5 5999999999999999988765

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=94.61  E-value=0.063  Score=46.42  Aligned_cols=38  Identities=32%  Similarity=0.288  Sum_probs=33.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++++|+++|.|+++.+|+.++..|+++|++|++..++.
T Consensus         2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~   39 (248)
T PRK05557          2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYASS   39 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence            56889999999999999999999999999997776543

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=94.61  E-value=0.09  Score=49.47  Aligned_cols=36  Identities=28%  Similarity=0.168  Sum_probs=33.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++|+|-|++|.+|.-++..|+.+|.+|.-.-|+.
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~   40 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDP   40 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCc
Confidence            689999999999999999999999999998887764

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=94.60  E-value=0.058  Score=51.12  Aligned_cols=77  Identities=19%  Similarity=0.236  Sum_probs=52.2

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC---EEEEEeCCC---------------CCH-hhhcCCCcEEEEecCCCcc--c
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHALT---------------KNP-EQITSEADIVIAAAGVANL--V  193 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga---~V~v~~~~t---------------~~l-~~~l~~ADIVIsa~g~p~~--i  193 (272)
                      ...+|.|+|++|.+|+-+..+|.+++.   ++..+.+..               .++ .+.+.++|+||.|+|....  +
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s~~~   85 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSISKKF   85 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHHHHH
Confidence            457899999999999999999998653   443332221               011 1345789999999975321  2


Q ss_pred             cCCCcCCCcEEEEeeeCC
Q 024116          194 RGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       194 ~~~~vk~g~vviDig~~~  211 (272)
                      -++..+.|+.|||.+..+
T Consensus        86 ~~~~~~~g~~VIDlS~~f  103 (344)
T PLN02383         86 GPIAVDKGAVVVDNSSAF  103 (344)
T ss_pred             HHHHHhCCCEEEECCchh
Confidence            223346799999998664

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=94.58  E-value=0.081  Score=48.72  Aligned_cols=92  Identities=26%  Similarity=0.291  Sum_probs=60.5

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCCCC-------------------C---H
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALTK-------------------N---P  173 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~-V~v~~~~t~-------------------~---l  173 (272)
                      +|.....+..++..++ ..|.+|+|.|.|. +|..+++++...|++ |+++.++..                   +   +
T Consensus       146 ~~~~~ta~~~l~~~~~-~~g~~vlV~G~G~-vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~  223 (339)
T cd08239         146 LCGIGTAYHALRRVGV-SGRDTVLVVGAGP-VGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEI  223 (339)
T ss_pred             cchHHHHHHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHH
Confidence            4443444555555443 3599999999865 699999999999998 887754321                   1   1


Q ss_pred             hhhcC--CCcEEEEecCCCcccc--CCCcCCCcEEEEeeeC
Q 024116          174 EQITS--EADIVIAAAGVANLVR--GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       174 ~~~l~--~ADIVIsa~g~p~~i~--~~~vk~g~vviDig~~  210 (272)
                      .+...  .+|+||.++|.+..+.  -+.++++..++-+|..
T Consensus       224 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~  264 (339)
T cd08239         224 RELTSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEG  264 (339)
T ss_pred             HHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCC
Confidence            12222  4799999998765432  2456777677777754

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=94.56  E-value=0.064  Score=50.17  Aligned_cols=76  Identities=13%  Similarity=0.125  Sum_probs=52.7

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC----CCHhhhcCCCcEEEEecCCCc--cccCCCcCCCcEEEEeee
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT----KNPEQITSEADIVIAAAGVAN--LVRGSWLKPGAVVLDVGT  209 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t----~~l~~~l~~ADIVIsa~g~p~--~i~~~~vk~g~vviDig~  209 (272)
                      -+|.|+|++|..|.-+.++|.++- .++.-..+..    .+..+.+.++|++|.|++..-  -+-+...+.|+.|||...
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~~~~~~~~~~~~~D~vFlalp~~~s~~~~~~~~~~g~~VIDlSa   81 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRKDAAERAKLLNAADVAILCLPDDAAREAVSLVDNPNTCIIDAST   81 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccccCcCCHhHhhcCCCEEEECCCHHHHHHHHHHHHhCCCEEEECCh
Confidence            379999999999999999998875 4544443332    234556688999999987421  121223356899999986


Q ss_pred             CCC
Q 024116          210 CPV  212 (272)
Q Consensus       210 ~~~  212 (272)
                      ...
T Consensus        82 dfR   84 (310)
T TIGR01851        82 AYR   84 (310)
T ss_pred             HHh
Confidence            653

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.55  E-value=0.057  Score=50.69  Aligned_cols=64  Identities=20%  Similarity=0.288  Sum_probs=51.4

Q ss_pred             HHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhhhcC--CCcEEEEec
Q 024116          122 GCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITS--EADIVIAAA  187 (272)
Q Consensus       122 g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l~~~l~--~ADIVIsa~  187 (272)
                      .+...|++++.. .|+++.|+|.|| +|.-..++...+|..|+++.+..+..+++++  -||..|.++
T Consensus       169 TvYspLk~~g~~-pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~  234 (360)
T KOG0023|consen  169 TVYSPLKRSGLG-PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDST  234 (360)
T ss_pred             EEeehhHHcCCC-CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEec
Confidence            356678999988 999999999999 6999999999999999999887655555555  356655544

>PRK06197 short chain dehydrogenase; Provisional

Probab=94.54  E-value=0.033  Score=50.90  Aligned_cols=37  Identities=27%  Similarity=0.284  Sum_probs=33.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~   49 (306)
T PRK06197         13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRN   49 (306)
T ss_pred             cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999998888999999999999999888764

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=94.54  E-value=0.062  Score=54.22  Aligned_cols=37  Identities=22%  Similarity=0.005  Sum_probs=32.8

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+||.++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~  114 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSA  114 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4789999999988889999999999999999887653

>PLN02253 xanthoxin dehydrogenase

Probab=94.53  E-value=0.042  Score=49.24  Aligned_cols=37  Identities=32%  Similarity=0.472  Sum_probs=33.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~   51 (280)
T PLN02253         15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQ   51 (280)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            4689999999999889999999999999999988764

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.53  E-value=0.056  Score=48.75  Aligned_cols=35  Identities=14%  Similarity=0.255  Sum_probs=31.3

Q ss_pred             CccceEEEEcCC---cccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g---~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++||.++|.|+|   + +|++++..|+++|++|.++.|+
T Consensus         5 l~~k~~lVTGas~~~G-IG~aiA~~la~~Ga~V~~~~r~   42 (271)
T PRK06505          5 MQGKRGLIMGVANDHS-IAWGIAKQLAAQGAELAFTYQG   42 (271)
T ss_pred             cCCCEEEEeCCCCCCc-HHHHHHHHHHhCCCEEEEecCc
Confidence            689999999998   5 5999999999999999988654

>PRK12742 oxidoreductase; Provisional

Probab=94.51  E-value=0.069  Score=46.27  Aligned_cols=36  Identities=25%  Similarity=0.299  Sum_probs=31.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      .++||+++|.|+++-+|+.++..|+++|++|.+..+
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~   38 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYA   38 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence            367999999999888899999999999999877644

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=94.50  E-value=0.075  Score=50.33  Aligned_cols=69  Identities=16%  Similarity=0.224  Sum_probs=50.9

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC--------CEEEEEeC-----C----------------------------CCCHhhh
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHH--------ATVSIVHA-----L----------------------------TKNPEQI  176 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~g--------a~V~v~~~-----~----------------------------t~~l~~~  176 (272)
                      +|.|||+|.- |.++|..|...|        .+|++..|     .                            +.++++.
T Consensus         1 kI~VIGaG~w-GtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea   79 (342)
T TIGR03376         1 RVAVVGSGNW-GTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA   79 (342)
T ss_pred             CEEEECcCHH-HHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence            5899999885 999999999988        78888865     1                            1356788


Q ss_pred             cCCCcEEEEecCCCc---ccc--CCCcCCCcEEEEe
Q 024116          177 TSEADIVIAAAGVAN---LVR--GSWLKPGAVVLDV  207 (272)
Q Consensus       177 l~~ADIVIsa~g~p~---~i~--~~~vk~g~vviDi  207 (272)
                      +++||+||-|++.-.   ++.  ..+++++..+|-+
T Consensus        80 l~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~  115 (342)
T TIGR03376        80 AKGADILVFVIPHQFLEGICKQLKGHVKPNARAISC  115 (342)
T ss_pred             HhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEE
Confidence            999999999998532   111  2345666666655

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.50  E-value=0.074  Score=49.31  Aligned_cols=59  Identities=17%  Similarity=0.271  Sum_probs=47.0

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------------------CCHhhhc
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------------------KNPEQIT  177 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t---------------------------------~~l~~~l  177 (272)
                      -.+++|+.|+|-|+|.-+||.+|..++++|+++.+.+.+.                                 +.+++..
T Consensus        33 ~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~  112 (300)
T KOG1201|consen   33 LKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEV  112 (300)
T ss_pred             hhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            4578999999999999999999999999999876665331                                 1234566


Q ss_pred             CCCcEEEEecCC
Q 024116          178 SEADIVIAAAGV  189 (272)
Q Consensus       178 ~~ADIVIsa~g~  189 (272)
                      .+-||+|+..|.
T Consensus       113 G~V~ILVNNAGI  124 (300)
T KOG1201|consen  113 GDVDILVNNAGI  124 (300)
T ss_pred             CCceEEEecccc
Confidence            788999988883

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=94.49  E-value=0.048  Score=51.54  Aligned_cols=78  Identities=18%  Similarity=0.203  Sum_probs=54.2

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhC---CCEEEEEeCCC---------------CCHhhh-cCCCcEEEEecCCCc--cc
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRH---HATVSIVHALT---------------KNPEQI-TSEADIVIAAAGVAN--LV  193 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~---ga~V~v~~~~t---------------~~l~~~-l~~ADIVIsa~g~p~--~i  193 (272)
                      ++.+|.|||++|.+|+-+..+|.++   ..++....+..               +++.+. ..++|+|+.|+|..-  -+
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~~s~~~   82 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGREASAAY   82 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHHHHHHH
Confidence            5678999999999999999999984   24666655431               122222 267899999997431  13


Q ss_pred             cCCCcCCCcEEEEeeeCCC
Q 024116          194 RGSWLKPGAVVLDVGTCPV  212 (272)
Q Consensus       194 ~~~~vk~g~vviDig~~~~  212 (272)
                      -++..+.|+.|||.+..+.
T Consensus        83 ~~~~~~~g~~VIDlS~~fR  101 (336)
T PRK08040         83 AEEATNAGCLVIDSSGLFA  101 (336)
T ss_pred             HHHHHHCCCEEEECChHhc
Confidence            3344567999999986653

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=94.49  E-value=0.055  Score=51.18  Aligned_cols=85  Identities=21%  Similarity=0.237  Sum_probs=58.8

Q ss_pred             HHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH--------------------hhhcCCCcEE
Q 024116          124 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP--------------------EQITSEADIV  183 (272)
Q Consensus       124 ~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l--------------------~~~l~~ADIV  183 (272)
                      .+.|++.+. -.|++|+|+|.|+. |.-+++++..+||+|+.+.+..+.+                    +..-+.+|++
T Consensus       156 y~alk~~~~-~pG~~V~I~G~GGl-Gh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~i  233 (339)
T COG1064         156 YRALKKANV-KPGKWVAVVGAGGL-GHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAI  233 (339)
T ss_pred             eeehhhcCC-CCCCEEEEECCcHH-HHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEE
Confidence            344554322 25999999999985 9999999988999999998764211                    1222238888


Q ss_pred             EEecCCCcccc--CCCcCCCcEEEEeeeCC
Q 024116          184 IAAAGVANLVR--GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       184 Isa~g~p~~i~--~~~vk~g~vviDig~~~  211 (272)
                      |++++ +..+.  -+.++++-.++=+|..+
T Consensus       234 i~tv~-~~~~~~~l~~l~~~G~~v~vG~~~  262 (339)
T COG1064         234 IDTVG-PATLEPSLKALRRGGTLVLVGLPG  262 (339)
T ss_pred             EECCC-hhhHHHHHHHHhcCCEEEEECCCC
Confidence            88888 55443  34577776677778774

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=94.45  E-value=0.35  Score=48.60  Aligned_cols=115  Identities=18%  Similarity=0.274  Sum_probs=75.8

Q ss_pred             HHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCcccccccccccc
Q 024116           29 KIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAM  108 (272)
Q Consensus        29 ~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~  108 (272)
                      .....++.+++-..+..| ..+++++.+.++.++..    |+.|.. +|.   ...+.+.....++|+-      -.|. 
T Consensus       169 i~~~v~~~~~~~iiiAip-s~~~~~~~~i~~~l~~~----~~~v~~-lP~---~~~l~~~~~~lreI~i------eDLL-  232 (588)
T COG1086         169 IERVVEELGIQLILIAIP-SASQEERRRILLRLART----GIAVRI-LPQ---LTDLKDLNGQLREIEI------EDLL-  232 (588)
T ss_pred             HHHHHHHcCCceEEEecC-CCCHHHHHHHHHHHHhc----CCcEEe-cCc---HHHHHHhccccccCCH------HHHh-
Confidence            567788899998888877 56889999999999985    333322 332   3445553333444332      1122 


Q ss_pred             CCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024116          109 RGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (272)
Q Consensus       109 ~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~  169 (272)
                      |  ++. ++.+...+..       .+.||+|+|-|+||.+|..++..+++.+. ++.+..+.
T Consensus       233 g--R~p-V~~d~~~i~~-------~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~  284 (588)
T COG1086         233 G--RPP-VALDTELIGA-------MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRD  284 (588)
T ss_pred             C--CCC-CCCCHHHHHh-------HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCc
Confidence            3  222 2333233332       26899999999999999999999999995 77777665

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=94.45  E-value=0.057  Score=51.93  Aligned_cols=34  Identities=32%  Similarity=0.475  Sum_probs=30.3

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  168 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~  168 (272)
                      |+.++|+|+|.|+. |-.++.+|+..|. ++++++.
T Consensus        40 L~~~~VlviG~GGl-Gs~va~~La~~Gvg~i~lvD~   74 (392)
T PRK07878         40 LKNARVLVIGAGGL-GSPTLLYLAAAGVGTLGIVEF   74 (392)
T ss_pred             HhcCCEEEECCCHH-HHHHHHHHHHcCCCeEEEECC
Confidence            57899999999995 9999999999996 8888863

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=94.45  E-value=0.065  Score=46.76  Aligned_cols=36  Identities=22%  Similarity=0.250  Sum_probs=32.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++|+++|.|+++.+|+.++..|+++|++|.+..++
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~   36 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLN   36 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCC
Confidence            578999999998889999999999999999888664

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=94.44  E-value=0.077  Score=48.18  Aligned_cols=52  Identities=17%  Similarity=0.224  Sum_probs=41.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------CHhhhcCCCcEEEEecC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAG  188 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~---------------------~l~~~l~~ADIVIsa~g  188 (272)
                      ++++|.|++|.+|+.++..|.++|.+|+++.|+..                     ++.+.++.+|+||...+
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~   73 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA   73 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence            47999999888999999999999999998876531                     23455667899886665

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK06198 short chain dehydrogenase; Provisional

Probab=94.41  E-value=0.053  Score=47.80  Aligned_cols=38  Identities=21%  Similarity=0.243  Sum_probs=33.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~-V~v~~~~t  170 (272)
                      .+++|+++|.|+++.+|+.++..|.++|++ |+++.|+.
T Consensus         3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~   41 (260)
T PRK06198          3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNA   41 (260)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCH
Confidence            368999999999888999999999999998 88887754

>PRK06914 short chain dehydrogenase; Provisional

Probab=94.40  E-value=0.063  Score=48.01  Aligned_cols=36  Identities=31%  Similarity=0.204  Sum_probs=32.1

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++|.++|.|+++.+|+.++..|+++|++|+++.|+.
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~   37 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNP   37 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCH
Confidence            578999999988899999999999999998887653

>PRK05086 malate dehydrogenase; Provisional

Probab=94.39  E-value=0.11  Score=48.41  Aligned_cols=55  Identities=27%  Similarity=0.432  Sum_probs=39.7

Q ss_pred             ceEEEEcCCcccHHHHHHHHHh-CC--CEEEEEeCC-----------------------CCCHhhhcCCCcEEEEecCCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQR-HH--ATVSIVHAL-----------------------TKNPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~-~g--a~V~v~~~~-----------------------t~~l~~~l~~ADIVIsa~g~p  190 (272)
                      +|++|||++|.+|..++..|.. .+  ..++++.+.                       ..++.+.++++|+||.+.|.|
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~   80 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA   80 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence            5899999955579999988754 33  356666531                       124467789999999999975


Q ss_pred             c
Q 024116          191 N  191 (272)
Q Consensus       191 ~  191 (272)
                      +
T Consensus        81 ~   81 (312)
T PRK05086         81 R   81 (312)
T ss_pred             C
Confidence            4

>PRK08278 short chain dehydrogenase; Provisional

Probab=94.39  E-value=0.069  Score=47.97  Aligned_cols=38  Identities=26%  Similarity=0.379  Sum_probs=34.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (273)
T PRK08278          3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTA   40 (273)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeccc
Confidence            46899999999999899999999999999999887753

>PRK07806 short chain dehydrogenase; Provisional

Probab=94.39  E-value=0.076  Score=46.42  Aligned_cols=36  Identities=31%  Similarity=0.333  Sum_probs=32.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~   39 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQ   39 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            678999999997778999999999999999888765

>PLN02778 3,5-epimerase/4-reductase

Probab=94.39  E-value=0.12  Score=47.41  Aligned_cols=54  Identities=19%  Similarity=0.141  Sum_probs=41.1

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC---HhhhcC--CCcEEEEecC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---PEQITS--EADIVIAAAG  188 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~---l~~~l~--~ADIVIsa~g  188 (272)
                      ..++++|.|++|.+|+.++..|.++|.+|+.......+   +...++  +.|+||.+.+
T Consensus         8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~~~~~~~~v~~~l~~~~~D~ViH~Aa   66 (298)
T PLN02778          8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSGRLENRASLEADIDAVKPTHVFNAAG   66 (298)
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCEEEEecCccCCHHHHHHHHHhcCCCEEEECCc
Confidence            34789999999999999999999999998765443322   333333  6899997665

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=94.37  E-value=0.12  Score=48.42  Aligned_cols=54  Identities=28%  Similarity=0.354  Sum_probs=41.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC-C-EEEEEeCCC------------------------C-CHhhhcCCCcEEEEecCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHH-A-TVSIVHALT------------------------K-NPEQITSEADIVIAAAGV  189 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~g-a-~V~v~~~~t------------------------~-~l~~~l~~ADIVIsa~g~  189 (272)
                      +||.|||+|+ ||.+++..|..++ + ++.+.+...                        . .-.+.++.||+||-+.|.
T Consensus         1 ~KVaviGaG~-VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~   79 (313)
T COG0039           1 MKVAVIGAGN-VGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGV   79 (313)
T ss_pred             CeEEEECCCh-HHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCC
Confidence            5899999977 6999999998887 4 788886541                        0 115789999999988886


Q ss_pred             Cc
Q 024116          190 AN  191 (272)
Q Consensus       190 p~  191 (272)
                      |.
T Consensus        80 pr   81 (313)
T COG0039          80 PR   81 (313)
T ss_pred             CC
Confidence            53

>PRK07411 hypothetical protein; Validated

Probab=94.36  E-value=0.064  Score=51.63  Aligned_cols=35  Identities=23%  Similarity=0.386  Sum_probs=30.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  168 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~  168 (272)
                      .|+.++|+|||.|+. |-+++.+|+..|. ++++++.
T Consensus        35 ~L~~~~VlivG~GGl-G~~va~~La~~Gvg~l~lvD~   70 (390)
T PRK07411         35 RLKAASVLCIGTGGL-GSPLLLYLAAAGIGRIGIVDF   70 (390)
T ss_pred             HHhcCcEEEECCCHH-HHHHHHHHHHcCCCEEEEECC
Confidence            357899999999995 9999999999996 8888864

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=94.36  E-value=0.063  Score=47.39  Aligned_cols=37  Identities=19%  Similarity=0.284  Sum_probs=33.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++|+++|.|+++-+|+.++..|.++|++|.++.++
T Consensus         8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~   44 (255)
T PRK06113          8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN   44 (255)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            3679999999999999999999999999998888765

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=94.35  E-value=0.056  Score=50.63  Aligned_cols=76  Identities=16%  Similarity=0.161  Sum_probs=51.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC-CC---HhhhcCCCcEEEEecCCCc--cccCCCcCCCcEEEEeee
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT-KN---PEQITSEADIVIAAAGVAN--LVRGSWLKPGAVVLDVGT  209 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t-~~---l~~~l~~ADIVIsa~g~p~--~i~~~~vk~g~vviDig~  209 (272)
                      .+|.|+|++|.+|.-+..+|.++. .++....+.. .+   .++...++|+||.|++.--  -+-+...+.|+.|||.+.
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~~~~~~~~~~~~DvvFlalp~~~s~~~~~~~~~~g~~VIDlSa   82 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKDAAARRELLNAADVAILCLPDDAAREAVALIDNPATRVIDAST   82 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCcccCchhhhcCCCEEEECCCHHHHHHHHHHHHhCCCEEEECCh
Confidence            478999999999999999998876 2433333322 12   2334568999999996321  122233467899999987


Q ss_pred             CCC
Q 024116          210 CPV  212 (272)
Q Consensus       210 ~~~  212 (272)
                      ...
T Consensus        83 dfR   85 (313)
T PRK11863         83 AHR   85 (313)
T ss_pred             hhh
Confidence            754

>PRK08643 acetoin reductase; Validated

Probab=94.34  E-value=0.066  Score=47.13  Aligned_cols=34  Identities=26%  Similarity=0.257  Sum_probs=31.4

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~   35 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYN   35 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            7899999999999999999999999999888765

>PRK08226 short chain dehydrogenase; Provisional

Probab=94.34  E-value=0.071  Score=47.11  Aligned_cols=37  Identities=22%  Similarity=0.370  Sum_probs=33.6

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++|+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~   40 (263)
T PRK08226          4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISP   40 (263)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH
Confidence            6789999999999899999999999999999887753

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=94.33  E-value=0.067  Score=47.46  Aligned_cols=37  Identities=16%  Similarity=0.031  Sum_probs=32.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ...+++++|+|+++.+|+.++..|+++|++|+.+.|+
T Consensus        14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~   50 (251)
T PLN00141         14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRD   50 (251)
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecC
Confidence            3568999999998888999999999999999877654

>PRK12827 short chain dehydrogenase; Provisional

Probab=94.28  E-value=0.073  Score=46.23  Aligned_cols=36  Identities=17%  Similarity=0.268  Sum_probs=31.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      ++++|+++|.|+++.+|+.++..|+++|++|++..+
T Consensus         3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~   38 (249)
T PRK12827          3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDI   38 (249)
T ss_pred             CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcC
Confidence            367899999999999999999999999999888544

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.28  E-value=0.075  Score=48.81  Aligned_cols=39  Identities=33%  Similarity=0.354  Sum_probs=34.9

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ..+++||+++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus         7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~   45 (306)
T PRK07792          7 TTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVA   45 (306)
T ss_pred             CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCC
Confidence            367899999999999889999999999999999888653

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.26  E-value=0.074  Score=47.19  Aligned_cols=36  Identities=22%  Similarity=0.261  Sum_probs=31.4

Q ss_pred             CccceEEEEcCC--cccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRS--NIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g--~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++||.++|.|++  +-+|++++..|+++|++|+++.|+
T Consensus         5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~   42 (252)
T PRK06079          5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN   42 (252)
T ss_pred             cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence            689999999997  235999999999999999988764

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=94.23  E-value=0.12  Score=41.52  Aligned_cols=49  Identities=20%  Similarity=0.276  Sum_probs=35.4

Q ss_pred             eEEEEcC-CcccHHHHHHHHHh-CCCE-EEEEeCCC----------------------CCHhhhcCCCcEEEEec
Q 024116          138 NAVVIGR-SNIVGLPTSLLLQR-HHAT-VSIVHALT----------------------KNPEQITSEADIVIAAA  187 (272)
Q Consensus       138 ~v~ViG~-g~~vG~~la~~L~~-~ga~-V~v~~~~t----------------------~~l~~~l~~ADIVIsa~  187 (272)
                      ||.|+|+ |. +|+.++..+.+ .+.+ |-.+.+..                      .++++.+.++|++|-.+
T Consensus         2 rV~i~G~~Gr-MG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT   75 (124)
T PF01113_consen    2 RVGIVGASGR-MGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT   75 (124)
T ss_dssp             EEEEETTTSH-HHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES
T ss_pred             EEEEECCCCH-HHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC
Confidence            7899999 66 59999999998 5666 44455554                      45677777788888666

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=94.23  E-value=0.13  Score=48.34  Aligned_cols=76  Identities=22%  Similarity=0.237  Sum_probs=51.8

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHhh----hcC-CCcEEEEecC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPEQ----ITS-EADIVIAAAG  188 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t-------------------~~l~~----~l~-~ADIVIsa~g  188 (272)
                      -.|.+|+|.|.|. +|..+++++..+|+ .|+++.++.                   .++.+    ... .+|+||.++|
T Consensus       190 ~~g~~VlV~G~G~-vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G  268 (371)
T cd08281         190 RPGQSVAVVGLGG-VGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAG  268 (371)
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCC
Confidence            3689999999865 69999999999998 577765431                   11111    111 4799999998


Q ss_pred             CCcccc--CCCcCCCcEEEEeeeC
Q 024116          189 VANLVR--GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       189 ~p~~i~--~~~vk~g~vviDig~~  210 (272)
                      .+..+.  -+.++++-.++-+|..
T Consensus       269 ~~~~~~~~~~~l~~~G~iv~~G~~  292 (371)
T cd08281         269 SVPALETAYEITRRGGTTVTAGLP  292 (371)
T ss_pred             ChHHHHHHHHHHhcCCEEEEEccC
Confidence            765432  2356777677777754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK07677 short chain dehydrogenase; Provisional

Probab=94.23  E-value=0.067  Score=47.12  Aligned_cols=35  Identities=20%  Similarity=0.192  Sum_probs=31.6

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~   35 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTK   35 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            68999999999899999999999999999887653

>PRK09135 pteridine reductase; Provisional

Probab=94.22  E-value=0.07  Score=46.35  Aligned_cols=36  Identities=19%  Similarity=0.138  Sum_probs=32.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .++++++|.|+++.+|+.++..|+++|++|+++.|+
T Consensus         4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~   39 (249)
T PRK09135          4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHR   39 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            467899999999999999999999999999988764

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=94.20  E-value=0.066  Score=52.31  Aligned_cols=38  Identities=21%  Similarity=0.288  Sum_probs=34.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||+|+|||+|.+ |--++..|.+.|++|+++.|+.
T Consensus       171 ~~~~GKrV~VIG~GaS-A~di~~~l~~~ga~vt~~qRs~  208 (443)
T COG2072         171 EDLRGKRVLVIGAGAS-AVDIAPELAEVGASVTLSQRSP  208 (443)
T ss_pred             cccCCCeEEEECCCcc-HHHHHHHHHhcCCeeEEEecCC
Confidence            5789999999999998 9999999999999999998763

>PLN00106 malate dehydrogenase

Probab=94.20  E-value=0.18  Score=47.40  Aligned_cols=56  Identities=27%  Similarity=0.409  Sum_probs=43.0

Q ss_pred             ccceEEEEcC-CcccHHHHHHHHHhCCC--EEEEEeCC-----------------------CCCHhhhcCCCcEEEEecC
Q 024116          135 MGKNAVVIGR-SNIVGLPTSLLLQRHHA--TVSIVHAL-----------------------TKNPEQITSEADIVIAAAG  188 (272)
Q Consensus       135 ~gk~v~ViG~-g~~vG~~la~~L~~~ga--~V~v~~~~-----------------------t~~l~~~l~~ADIVIsa~g  188 (272)
                      ..+||+|+|+ |. ||..++..|+.++.  ++.+++..                       ++++++.+++||+||.+.|
T Consensus        17 ~~~KV~IiGaaG~-VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG   95 (323)
T PLN00106         17 PGFKVAVLGAAGG-IGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG   95 (323)
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence            4579999999 66 69999999986663  67766532                       2345788999999999998


Q ss_pred             CCc
Q 024116          189 VAN  191 (272)
Q Consensus       189 ~p~  191 (272)
                      .|.
T Consensus        96 ~~~   98 (323)
T PLN00106         96 VPR   98 (323)
T ss_pred             CCC
Confidence            653

>PRK07109 short chain dehydrogenase; Provisional

Probab=94.19  E-value=0.046  Score=51.08  Aligned_cols=38  Identities=26%  Similarity=0.224  Sum_probs=34.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++|+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~   42 (334)
T PRK07109          5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGE   42 (334)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46899999999988889999999999999999988753

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.19  E-value=0.095  Score=38.40  Aligned_cols=32  Identities=25%  Similarity=0.332  Sum_probs=29.2

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++|||+|-+ |--+|..|.+.|.+|+++++..
T Consensus         1 ~vvViGgG~i-g~E~A~~l~~~g~~vtli~~~~   32 (80)
T PF00070_consen    1 RVVVIGGGFI-GIELAEALAELGKEVTLIERSD   32 (80)
T ss_dssp             EEEEESSSHH-HHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEEEECcCHH-HHHHHHHHHHhCcEEEEEeccc
Confidence            6899999885 9999999999999999999875

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=94.19  E-value=0.087  Score=48.94  Aligned_cols=35  Identities=20%  Similarity=0.311  Sum_probs=31.1

Q ss_pred             CCCCccceEEEEcC---CcccHHHHHHHHHhCCCEEEEE
Q 024116          131 GVEIMGKNAVVIGR---SNIVGLPTSLLLQRHHATVSIV  166 (272)
Q Consensus       131 ~~~l~gk~v~ViG~---g~~vG~~la~~L~~~ga~V~v~  166 (272)
                      +.+++||.++|-|+   +| +|+++|..|+++|++|.+.
T Consensus         4 ~~~l~gk~alITGa~~s~G-IG~a~A~~la~~Ga~Vv~~   41 (303)
T PLN02730          4 PIDLRGKRAFIAGVADDNG-YGWAIAKALAAAGAEILVG   41 (303)
T ss_pred             CcCCCCCEEEEeCCCCCCc-HHHHHHHHHHHCCCEEEEE
Confidence            45789999999999   66 5999999999999999883

>PRK12937 short chain dehydrogenase; Provisional

Probab=94.18  E-value=0.086  Score=45.83  Aligned_cols=37  Identities=24%  Similarity=0.196  Sum_probs=32.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++++|+++|.|+++-+|+.++..|.++|++|+++.+.
T Consensus         2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~   38 (245)
T PRK12937          2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAG   38 (245)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence            4689999999998889999999999999998877543

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.17  E-value=0.098  Score=46.68  Aligned_cols=36  Identities=22%  Similarity=0.242  Sum_probs=31.3

Q ss_pred             CCccceEEEEcCC---cccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g---~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||.++|.|++   + +|++++..|+++|++|+++.|+
T Consensus         4 ~~~~k~~lItGa~~s~G-IG~aia~~la~~G~~v~~~~r~   42 (257)
T PRK08594          4 SLEGKTYVVMGVANKRS-IAWGIARSLHNAGAKLVFTYAG   42 (257)
T ss_pred             ccCCCEEEEECCCCCCC-HHHHHHHHHHHCCCEEEEecCc
Confidence            5789999999985   6 5999999999999999988653

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=94.16  E-value=0.074  Score=46.17  Aligned_cols=37  Identities=27%  Similarity=0.378  Sum_probs=32.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++++|+++|.|+++.+|+.++..|.++|+.|++..++
T Consensus         3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~   39 (245)
T PRK12936          3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTR   39 (245)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC
Confidence            4689999999998889999999999999988776554

>PRK05993 short chain dehydrogenase; Provisional

Probab=94.16  E-value=0.066  Score=48.13  Aligned_cols=36  Identities=19%  Similarity=0.125  Sum_probs=32.0

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+|+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~   38 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKE   38 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            478999999977789999999999999999998763

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=94.16  E-value=0.14  Score=47.91  Aligned_cols=53  Identities=19%  Similarity=0.397  Sum_probs=41.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCCC------------------------CHhhhcCCCcEEEEecCCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALTK------------------------NPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t~------------------------~l~~~l~~ADIVIsa~g~p  190 (272)
                      .||.|||+|. ||.+++..|+.++.  ++.+++.+.+                        .-.+.+++|||||.+.|.|
T Consensus         4 ~Ki~IiGaG~-VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~~~adivvitaG~~   82 (312)
T cd05293           4 NKVTVVGVGQ-VGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVTANSKVVIVTAGAR   82 (312)
T ss_pred             CEEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHhCCCCEEEECCCCC
Confidence            5899999977 69999999988883  6888875320                        1235689999999999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07577 short chain dehydrogenase; Provisional

Probab=94.16  E-value=0.097  Score=45.25  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=32.6

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+|+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~   37 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSA   37 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence            579999999999899999999999999999888753

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=94.15  E-value=0.059  Score=47.11  Aligned_cols=35  Identities=31%  Similarity=0.382  Sum_probs=31.7

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +|+++|.|+++.+|+.++..|+++|++|+++.|+.
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~   35 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGE   35 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999999999999999999999999998754

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=94.15  E-value=0.11  Score=49.67  Aligned_cols=76  Identities=17%  Similarity=0.184  Sum_probs=52.0

Q ss_pred             ceEEEEcCCcccHHHHHHHHH-hCCC---EEEEEeCC-C--------------CCHh--hhcCCCcEEEEecCCC--ccc
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQ-RHHA---TVSIVHAL-T--------------KNPE--QITSEADIVIAAAGVA--NLV  193 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~-~~ga---~V~v~~~~-t--------------~~l~--~~l~~ADIVIsa~g~p--~~i  193 (272)
                      |+|.|||+.|+||+-+...|. +++.   ++....+. .              .++.  +..++.|+++.+.|..  .-+
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~~vDivffa~g~~~s~~~   80 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDALKALDIIITCQGGDYTNEI   80 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCcccccccCCCEEEEcCCHHHHHHH
Confidence            579999999999999999888 5553   33444321 1              1222  2567899999999853  224


Q ss_pred             cCCCcCCC--cEEEEeeeCCC
Q 024116          194 RGSWLKPG--AVVLDVGTCPV  212 (272)
Q Consensus       194 ~~~~vk~g--~vviDig~~~~  212 (272)
                      -+...+.|  ++|||-.....
T Consensus        81 ~p~~~~aG~~~~VIDnSSa~R  101 (366)
T TIGR01745        81 YPKLRESGWQGYWIDAASSLR  101 (366)
T ss_pred             HHHHHhCCCCeEEEECChhhh
Confidence            44456778  89999886643

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.13  E-value=0.12  Score=52.74  Aligned_cols=34  Identities=24%  Similarity=0.367  Sum_probs=31.5

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .||+|+|||+|-+ |..+|..|.++|.+|+|+.+.
T Consensus       326 ~~~~VaIIGaGpA-GLsaA~~L~~~G~~V~V~E~~  359 (654)
T PRK12769        326 SDKRVAIIGAGPA-GLACADVLARNGVAVTVYDRH  359 (654)
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHHCCCeEEEEecC
Confidence            6899999999998 999999999999999999764

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=94.12  E-value=0.048  Score=47.82  Aligned_cols=38  Identities=24%  Similarity=0.306  Sum_probs=34.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .++||+++|.|+++.+|..++..|+++|++|+++.|+.
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~   46 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTE   46 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCH
Confidence            35899999999999999999999999999999887753

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=94.12  E-value=0.19  Score=48.34  Aligned_cols=76  Identities=22%  Similarity=0.280  Sum_probs=55.3

Q ss_pred             CCCccceEEEEcCC---------cccHHHHHHHHHhCCCEEEEEeCCC-----------CCHhhhcCCCcEEEEecCCCc
Q 024116          132 VEIMGKNAVVIGRS---------NIVGLPTSLLLQRHHATVSIVHALT-----------KNPEQITSEADIVIAAAGVAN  191 (272)
Q Consensus       132 ~~l~gk~v~ViG~g---------~~vG~~la~~L~~~ga~V~v~~~~t-----------~~l~~~l~~ADIVIsa~g~p~  191 (272)
                      .+++|++|.|+|-+         +.-...++..|.++|++|.+.+-.-           .++++.++.||.||..|..+.
T Consensus       309 ~~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t~~~~  388 (411)
T TIGR03026       309 GPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILTDHDE  388 (411)
T ss_pred             hcccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEecCCHH
Confidence            35789999999931         2236788999999999999886431           366788999999999999887


Q ss_pred             cc--cCCCcCC---CcEEEEe
Q 024116          192 LV--RGSWLKP---GAVVLDV  207 (272)
Q Consensus       192 ~i--~~~~vk~---g~vviDi  207 (272)
                      +-  +.+.+++   ..+|+|.
T Consensus       389 ~~~~~~~~~~~~~~~~~v~D~  409 (411)
T TIGR03026       389 FKDLDLEKIKDLMKGKVVVDT  409 (411)
T ss_pred             HhccCHHHHHHhcCCCEEEeC
Confidence            63  3222321   3477773

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.09  E-value=0.13  Score=49.56  Aligned_cols=104  Identities=17%  Similarity=0.224  Sum_probs=64.7

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHh--------------hhcCCCcEEEEecCCCcc---ccCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPE--------------QITSEADIVIAAAGVANL---VRGSW  197 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l~--------------~~l~~ADIVIsa~g~p~~---i~~~~  197 (272)
                      +.++|+|+|-|++ |++++..|.++|++|+.++++...+.              ....++|+||-..|.+..   +. +-
T Consensus         2 ~~~~i~iiGlG~~-G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~-~A   79 (418)
T PRK00683          2 GLQRVVVLGLGVT-GKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQ-AA   79 (418)
T ss_pred             CCCeEEEEEECHH-HHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHH-HH
Confidence            4578999999997 99999999999999999987543211              113557887766664421   11 11


Q ss_pred             cCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhh----h-hceEeccCCCcccHHHHHHHHHHHHHHH
Q 024116          198 LKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAM----R-LASVITPVPGGVGPMTVAMLLSNTLDSA  265 (272)
Q Consensus       198 vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~----~-~~~~~tpvpGGvGp~T~amL~~n~v~a~  265 (272)
                      .+.|..                      ++.|.++....    . ..-.   |-|-.|.=|+.-|+.++++..
T Consensus        80 ~~~g~~----------------------vv~~~~~~~~~~~~~~~~~I~---ITGT~GKTTTt~ml~~iL~~~  127 (418)
T PRK00683         80 IASHIP----------------------VVTDIQLAFQTPEFTRYPSLG---ITGSTGKTTTILFLEHLLKRL  127 (418)
T ss_pred             HHCCCc----------------------EEEHHHHHHhhhhcCCCCEEE---EECCCChHHHHHHHHHHHHHc
Confidence            233322                      22332221100    1 1223   558889999999999988764

>PRK06153 hypothetical protein; Provisional

Probab=94.08  E-value=0.065  Score=51.56  Aligned_cols=78  Identities=14%  Similarity=0.174  Sum_probs=54.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-----------------------------------------
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-----------------------------------------  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t-----------------------------------------  170 (272)
                      .|++++|+|||.||. |-.++.+|++.|. ++++++...                                         
T Consensus       173 kL~~~~VaIVG~GG~-GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~  251 (393)
T PRK06153        173 KLEGQRIAIIGLGGT-GSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVP  251 (393)
T ss_pred             HHhhCcEEEEcCCcc-HHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEE
Confidence            478999999999996 9999999999995 888885320                                         


Q ss_pred             ------CCHhhhcCCCcEEEEecCCCc---cccCCCcCCCcEEEEeeeCC
Q 024116          171 ------KNPEQITSEADIVIAAAGVAN---LVRGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       171 ------~~l~~~l~~ADIVIsa~g~p~---~i~~~~vk~g~vviDig~~~  211 (272)
                            ++-...+..+|+||.|+....   .+.....+.+.-.||+|+.-
T Consensus       252 ~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~l  301 (393)
T PRK06153        252 HPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMGL  301 (393)
T ss_pred             EeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeecc
Confidence                  000135677899999987532   23323334466678888663

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=94.06  E-value=0.12  Score=47.58  Aligned_cols=51  Identities=24%  Similarity=0.407  Sum_probs=39.7

Q ss_pred             EEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHhhhcCCCcEEEEecCCCc
Q 024116          139 AVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAGVAN  191 (272)
Q Consensus       139 v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t--------------------------~~l~~~l~~ADIVIsa~g~p~  191 (272)
                      |.|||+|. +|..++..|+.+|. +|++++.+.                          .+ .+.+++||+||.++|.|.
T Consensus         1 I~IIGaG~-vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiVIit~g~p~   78 (300)
T cd01339           1 ISIIGAGN-VGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVVVITAGIPR   78 (300)
T ss_pred             CEEECCCH-HHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEEEEecCCCC
Confidence            57999977 59999999988774 888887542                          22 356899999999998653

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=94.05  E-value=0.31  Score=43.42  Aligned_cols=90  Identities=21%  Similarity=0.213  Sum_probs=58.4

Q ss_pred             HHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CC----Hhhhc
Q 024116          121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KN----PEQIT  177 (272)
Q Consensus       121 ~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------~~----l~~~l  177 (272)
                      ..++..+.+...--+|++++|.|+++.+|..++.++..+|++|++..++.                   .+    +.+.+
T Consensus       130 ~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  209 (325)
T cd08253         130 LTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVRQAGADAVFNYRAEDLADRILAAT  209 (325)
T ss_pred             HHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHHc
Confidence            33444444433334799999999867789999999999999988775532                   11    11222


Q ss_pred             --CCCcEEEEecCCCcc-ccCCCcCCCcEEEEeeeC
Q 024116          178 --SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       178 --~~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~~  210 (272)
                        +..|+++.++|.... ...++++++..++++|..
T Consensus       210 ~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~~~~  245 (325)
T cd08253         210 AGQGVDVIIEVLANVNLAKDLDVLAPGGRIVVYGSG  245 (325)
T ss_pred             CCCceEEEEECCchHHHHHHHHhhCCCCEEEEEeec
Confidence              247888887776432 223456666678888764

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=94.05  E-value=0.21  Score=45.16  Aligned_cols=93  Identities=16%  Similarity=0.105  Sum_probs=61.7

Q ss_pred             CCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------CH----h
Q 024116          118 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------NP----E  174 (272)
Q Consensus       118 ~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------------~l----~  174 (272)
                      +.+...+..+.+....-.|.+++|.|.++.+|..+++++..+|+.|++..++..                   +.    .
T Consensus       121 ~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  200 (323)
T cd05282         121 INPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKALGADEVIDSSPEDLAQRVK  200 (323)
T ss_pred             ccHHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHhcCCCEEecccchhHHHHHH
Confidence            333444444544444457899999999888899999999999998777644311                   11    1


Q ss_pred             hhc--CCCcEEEEecCCCccc-cCCCcCCCcEEEEeeeC
Q 024116          175 QIT--SEADIVIAAAGVANLV-RGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       175 ~~l--~~ADIVIsa~g~p~~i-~~~~vk~g~vviDig~~  210 (272)
                      +..  +..|+|+..+|.+... -.++++++..++++|..
T Consensus       201 ~~~~~~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~  239 (323)
T cd05282         201 EATGGAGARLALDAVGGESATRLARSLRPGGTLVNYGLL  239 (323)
T ss_pred             HHhcCCCceEEEECCCCHHHHHHHHhhCCCCEEEEEccC
Confidence            122  3579999888865432 12456777788888754

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>PRK06701 short chain dehydrogenase; Provisional

Probab=94.04  E-value=0.088  Score=47.97  Aligned_cols=38  Identities=24%  Similarity=0.360  Sum_probs=34.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      -+++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~   79 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLD   79 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46789999999998889999999999999999988765

>PRK08267 short chain dehydrogenase; Provisional

Probab=94.04  E-value=0.068  Score=47.25  Aligned_cols=34  Identities=21%  Similarity=0.233  Sum_probs=30.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      |+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~   35 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINE   35 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence            6899999999899999999999999999987653

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=94.02  E-value=0.096  Score=48.48  Aligned_cols=36  Identities=17%  Similarity=0.045  Sum_probs=32.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      +++||+|+|.|++|.+|+.++..|+++|.+|+++.+
T Consensus         3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r   38 (340)
T PLN02653          3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIR   38 (340)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEec
Confidence            678999999999888999999999999999888754

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=94.01  E-value=0.13  Score=50.13  Aligned_cols=74  Identities=20%  Similarity=0.223  Sum_probs=53.3

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------------------CHhhhcCCCcEEEEe
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------------NPEQITSEADIVIAA  186 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-----------------------------~l~~~l~~ADIVIsa  186 (272)
                      -.+|.|||-|- +|.|+|..|+. |.+|+.++++..                             +..+.+++||++|.+
T Consensus         6 ~mkI~vIGlGy-vGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~   83 (425)
T PRK15182          6 EVKIAIIGLGY-VGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIIT   83 (425)
T ss_pred             CCeEEEECcCc-chHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEE
Confidence            36899999988 59999999876 689999986531                             112457899999999


Q ss_pred             cCCCc---------ccc------CCCcCCCcEEEEeeeCC
Q 024116          187 AGVAN---------LVR------GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       187 ~g~p~---------~i~------~~~vk~g~vviDig~~~  211 (272)
                      ++.|.         .+.      ...+++|.+||+-.+-+
T Consensus        84 Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~  123 (425)
T PRK15182         84 VPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVY  123 (425)
T ss_pred             cCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence            99772         111      12457788888866554

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=93.99  E-value=0.13  Score=46.31  Aligned_cols=52  Identities=19%  Similarity=0.189  Sum_probs=41.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC---CEEEEEeCCC---------------CCHhhhcCCCcEEEEecCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHH---ATVSIVHALT---------------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~g---a~V~v~~~~t---------------~~l~~~l~~ADIVIsa~g~  189 (272)
                      .++.|||.|.+ |..++..|.+.|   ..|++++|+.               .+..+.+.++|+||-++..
T Consensus         3 m~I~iIG~G~m-G~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~   72 (267)
T PRK11880          3 KKIGFIGGGNM-ASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP   72 (267)
T ss_pred             CEEEEEechHH-HHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH
Confidence            47999999885 999999999888   6788888762               2334567889999988864

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=93.97  E-value=0.12  Score=47.75  Aligned_cols=52  Identities=25%  Similarity=0.381  Sum_probs=41.1

Q ss_pred             EEEEcCCcccHHHHHHHHHhCC--CEEEEEeCCCC------------------------CHhhhcCCCcEEEEecCCCc
Q 024116          139 AVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALTK------------------------NPEQITSEADIVIAAAGVAN  191 (272)
Q Consensus       139 v~ViG~g~~vG~~la~~L~~~g--a~V~v~~~~t~------------------------~l~~~l~~ADIVIsa~g~p~  191 (272)
                      +.|||+|. ||.+++..|+.+|  .++++++.+..                        .-.+.+++||+||.+.|.|.
T Consensus         1 i~iiGaG~-VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p~   78 (300)
T cd00300           1 ITIIGAGN-VGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPR   78 (300)
T ss_pred             CEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCCC
Confidence            47999988 6999999999988  47998875420                        11468899999999999753

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=93.95  E-value=0.14  Score=47.95  Aligned_cols=76  Identities=25%  Similarity=0.223  Sum_probs=52.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCCC-------------------CCH----hhhc--CCCcEEEEec
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALT-------------------KNP----EQIT--SEADIVIAAA  187 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~-V~v~~~~t-------------------~~l----~~~l--~~ADIVIsa~  187 (272)
                      -.|.+|+|.|.|. +|..+++++...|++ |+.+.++.                   ++.    .+..  +..|+||.++
T Consensus       175 ~~g~~VlV~G~g~-vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~  253 (358)
T TIGR03451       175 KRGDSVAVIGCGG-VGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAV  253 (358)
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECC
Confidence            3699999999865 699999999999985 77665431                   121    1222  2479999999


Q ss_pred             CCCccccC--CCcCCCcEEEEeeeC
Q 024116          188 GVANLVRG--SWLKPGAVVLDVGTC  210 (272)
Q Consensus       188 g~p~~i~~--~~vk~g~vviDig~~  210 (272)
                      |.+..+..  +.++++-.++-+|..
T Consensus       254 g~~~~~~~~~~~~~~~G~iv~~G~~  278 (358)
T TIGR03451       254 GRPETYKQAFYARDLAGTVVLVGVP  278 (358)
T ss_pred             CCHHHHHHHHHHhccCCEEEEECCC
Confidence            97654322  356777778888864

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.94  E-value=0.14  Score=52.19  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=31.2

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .||+|+|||+|-+ |..++..|+++|.+|+++.+.
T Consensus       309 ~~kkVaIIG~Gpa-Gl~aA~~L~~~G~~Vtv~e~~  342 (639)
T PRK12809        309 RSEKVAVIGAGPA-GLGCADILARAGVQVDVFDRH  342 (639)
T ss_pred             CCCEEEEECcCHH-HHHHHHHHHHcCCcEEEEeCC
Confidence            5999999999887 999999999999999999754

>PRK06720 hypothetical protein; Provisional

Probab=93.94  E-value=0.074  Score=45.13  Aligned_cols=42  Identities=29%  Similarity=0.377  Sum_probs=35.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP  173 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l  173 (272)
                      ..++||.++|.|+++-+|++++..|.+.|++|.++.++.+.+
T Consensus        12 ~~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~   53 (169)
T PRK06720         12 MKLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESG   53 (169)
T ss_pred             cccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            347899999999988779999999999999999988765433

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=93.92  E-value=0.14  Score=45.68  Aligned_cols=52  Identities=21%  Similarity=0.298  Sum_probs=41.8

Q ss_pred             EEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC----------------HhhhcCCCcEEEEecCCC
Q 024116          139 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN----------------PEQITSEADIVIAAAGVA  190 (272)
Q Consensus       139 v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~----------------l~~~l~~ADIVIsa~g~p  190 (272)
                      |+|.|++|.+|+.++..|+++|.+|+...|+...                ..+.+...|+||..++.+
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~~~   68 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAGEP   68 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCCCC
Confidence            5899999999999999999999999998875421                124567799999887743

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=93.92  E-value=0.17  Score=47.09  Aligned_cols=54  Identities=30%  Similarity=0.445  Sum_probs=41.7

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC----------------------------CCHhhhcCCCcEEEEe
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT----------------------------KNPEQITSEADIVIAA  186 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t----------------------------~~l~~~l~~ADIVIsa  186 (272)
                      .||.|+|++|.||..++..|+..|.  +|+.+++..                            .+ .+.+++||+||.+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence            4799999855579999999999884  588877531                            12 3568999999999


Q ss_pred             cCCCc
Q 024116          187 AGVAN  191 (272)
Q Consensus       187 ~g~p~  191 (272)
                      .|.|.
T Consensus        80 ag~p~   84 (309)
T cd05294          80 AGVPR   84 (309)
T ss_pred             cCCCC
Confidence            99764

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK07985 oxidoreductase; Provisional

Probab=93.92  E-value=0.095  Score=47.85  Aligned_cols=36  Identities=22%  Similarity=0.335  Sum_probs=32.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      .++||+++|.|+++-+|+.++..|+++|++|++..+
T Consensus        46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~   81 (294)
T PRK07985         46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYL   81 (294)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecC
Confidence            579999999999888999999999999999988754

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.91  E-value=0.1  Score=45.57  Aligned_cols=35  Identities=23%  Similarity=0.237  Sum_probs=31.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      +++|+++|.|+++-+|+.++..|+++|++|.++.+
T Consensus         3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~   37 (253)
T PRK08642          3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYH   37 (253)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence            57899999999888999999999999999887644

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=93.87  E-value=0.13  Score=47.92  Aligned_cols=53  Identities=21%  Similarity=0.245  Sum_probs=41.1

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC-------------------C------CHhhhcCCCcEEEEecCCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-------------------K------NPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t-------------------~------~l~~~l~~ADIVIsa~g~p  190 (272)
                      ||.|||+|. ||.++|..|+.++.  ++.+++.+.                   .      .-++.+++|||||.+.|.|
T Consensus         1 Ki~IIGaG~-VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~   79 (307)
T cd05290           1 KLVVIGAGH-VGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPS   79 (307)
T ss_pred             CEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCC
Confidence            689999977 69999999988883  677776431                   0      1257899999999999965


Q ss_pred             c
Q 024116          191 N  191 (272)
Q Consensus       191 ~  191 (272)
                      .
T Consensus        80 ~   80 (307)
T cd05290          80 I   80 (307)
T ss_pred             C
Confidence            3

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=93.87  E-value=2.1  Score=40.05  Aligned_cols=144  Identities=17%  Similarity=0.268  Sum_probs=92.7

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCCCC--CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCccc
Q 024116           22 SQTYVRNKIKACEEVGIKSIVTEFADGC--TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFH   99 (272)
Q Consensus        22 s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~--~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~~   99 (272)
                      |..=-.+=..+++++|.++.-..-....  ..+-|.+.++-|+.- +++.|.+--|.-.   ..+++...+      +++
T Consensus        57 STRTr~SFE~A~krLG~~Vv~~~~~~sSs~KGEtL~DT~~tl~ay-g~D~iViRH~~eg---aa~~~a~~~------~~~  126 (316)
T COG0540          57 STRTRLSFETAMKRLGADVVNFSDSESSSKKGETLADTIRTLSAY-GVDAIVIRHPEEG---AARLLAEFS------GVN  126 (316)
T ss_pred             CCchhhhHHHHHHHcCCcEEeecCCcccccccccHHHHHHHHHhh-CCCEEEEeCcccc---HHHHHHHhc------CCC
Confidence            3333345567889999987544433222  246689999999984 5899999888553   223333222      222


Q ss_pred             -cccccccccCCCCCccccCCHHHHHH---HHHHhCCCCccceEEEEc---CCcccHHHHHHHHHhCCCEEEEEeCCC--
Q 024116          100 -PLNIGNLAMRGREPLFIPCTPKGCIE---LLIRSGVEIMGKNAVVIG---RSNIVGLPTSLLLQRHHATVSIVHALT--  170 (272)
Q Consensus       100 -~~n~g~l~~~~~~~~~~p~Ta~g~~~---~l~~~~~~l~gk~v~ViG---~g~~vG~~la~~L~~~ga~V~v~~~~t--  170 (272)
                       .+|.|-      ...-.|+  ++.+.   +-+++ -.++|++|.++|   .|.+ .+..+..|...|++|.+|.-.+  
T Consensus       127 pvINaGD------G~~qHPT--Q~LLDl~TI~~~~-G~~~gl~iaivGDlkhsRv-a~S~~~~L~~~ga~v~lvsP~~L~  196 (316)
T COG0540         127 PVINAGD------GSHQHPT--QALLDLYTIREEF-GRLDGLKIAIVGDLKHSRV-AHSNIQALKRFGAEVYLVSPETLL  196 (316)
T ss_pred             ceEECCC------CCCCCcc--HHHHHHHHHHHHh-CCcCCcEEEEEccccchHH-HHHHHHHHHHcCCEEEEECchHhC
Confidence             456432      1222344  44443   34444 459999999999   6774 8999999999999999996321  


Q ss_pred             -------------------CCHhhhcCCCcEEEE
Q 024116          171 -------------------KNPEQITSEADIVIA  185 (272)
Q Consensus       171 -------------------~~l~~~l~~ADIVIs  185 (272)
                                         ..+++.+.++|++..
T Consensus       197 ~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~  230 (316)
T COG0540         197 PPEYILEELEEKGGVVVEHDSDEEVIEEADVLYM  230 (316)
T ss_pred             CchhHHHHHhhcCceEEEecchhhhhccCCEEEe
Confidence                               233458999999863

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=93.86  E-value=0.11  Score=55.58  Aligned_cols=35  Identities=23%  Similarity=0.318  Sum_probs=32.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      -.||+|+|||+|-+ |..+|..|+++|.+|+|+.+.
T Consensus       304 ~~gkkVaVIGsGPA-GLsaA~~Lar~G~~VtVfE~~  338 (944)
T PRK12779        304 AVKPPIAVVGSGPS-GLINAYLLAVEGFPVTVFEAF  338 (944)
T ss_pred             CCCCeEEEECCCHH-HHHHHHHHHHCCCeEEEEeeC
Confidence            36999999999998 999999999999999999864

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=93.84  E-value=0.14  Score=49.27  Aligned_cols=71  Identities=27%  Similarity=0.357  Sum_probs=50.1

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------------------------CCHhhhcCCCcEEEE
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------------------KNPEQITSEADIVIA  185 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------------------------~~l~~~l~~ADIVIs  185 (272)
                      +|.|||.|- +|.+++.+|+ .|.+|+.++++.                                .+..+..++||+||.
T Consensus         2 kI~VIGlGy-vGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii   79 (388)
T PRK15057          2 KITISGTGY-VGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII   79 (388)
T ss_pred             EEEEECCCH-HHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence            689999988 4999998777 489999998652                                112345688999999


Q ss_pred             ecCCCc----------ccc------CCCcCCCcEEEEeeeCC
Q 024116          186 AAGVAN----------LVR------GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       186 a~g~p~----------~i~------~~~vk~g~vviDig~~~  211 (272)
                      +++.|-          .+.      .. +++|.+||+-.+-|
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~  120 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVP  120 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecC
Confidence            998661          111      11 36788888766543

>PRK06444 prephenate dehydrogenase; Provisional

Probab=93.84  E-value=0.13  Score=44.95  Aligned_cols=59  Identities=12%  Similarity=0.276  Sum_probs=42.4

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCC-CcEEEEeeeC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKP-GAVVLDVGTC  210 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~-g~vviDig~~  210 (272)
                      +++|||+.|-+|+.++..|.+.|..|+            +++||+||-|++.....  +++++ ..+++|++.-
T Consensus         2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~------------~~~~DlVilavPv~~~~--~~i~~~~~~v~Dv~Sv   61 (197)
T PRK06444          2 MEIIIGKNGRLGRVLCSILDDNGLGVY------------IKKADHAFLSVPIDAAL--NYIESYDNNFVEISSV   61 (197)
T ss_pred             EEEEEecCCcHHHHHHHHHHhCCCEEE------------ECCCCEEEEeCCHHHHH--HHHHHhCCeEEecccc
Confidence            689999844469999999999999886            46899999999843211  11111 1368899864

>PRK08303 short chain dehydrogenase; Provisional

Probab=93.83  E-value=0.1  Score=48.21  Aligned_cols=37  Identities=27%  Similarity=0.239  Sum_probs=33.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||.++|.|+++-+|++++..|+++|++|+++.|+
T Consensus         5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~   41 (305)
T PRK08303          5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRS   41 (305)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            4789999999998778999999999999999998775

>PRK06180 short chain dehydrogenase; Provisional

Probab=93.82  E-value=0.078  Score=47.61  Aligned_cols=36  Identities=14%  Similarity=-0.080  Sum_probs=32.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+|+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~   38 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSE   38 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCH
Confidence            478999999988899999999999999999988753

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=93.81  E-value=0.099  Score=48.68  Aligned_cols=36  Identities=28%  Similarity=0.159  Sum_probs=32.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++||+++|.|++|.+|+.++..|+++|.+|+++.|+
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~   37 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLD   37 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCC
Confidence            478999999998888999999999999999988754

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=93.81  E-value=0.13  Score=48.71  Aligned_cols=34  Identities=21%  Similarity=0.453  Sum_probs=28.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEE
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIV  166 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~  166 (272)
                      ..|++..|+|||+||. |-|++++|+..|+ ++=++
T Consensus        62 ~~Lk~s~VLVVGaGGL-GcPa~~YLaaaGvG~lGiV   96 (427)
T KOG2017|consen   62 LSLKNSSVLVVGAGGL-GCPAAQYLAAAGVGRLGIV   96 (427)
T ss_pred             cccCCccEEEEccCCC-CCHHHHHHHHcCCCeeccc
Confidence            4678999999999996 9999999999986 54444

>PLN02602 lactate dehydrogenase

Probab=93.77  E-value=0.17  Score=48.03  Aligned_cols=53  Identities=21%  Similarity=0.373  Sum_probs=41.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCCC------------------------CHhhhcCCCcEEEEecCCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALTK------------------------NPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t~------------------------~l~~~l~~ADIVIsa~g~p  190 (272)
                      +||.|||+|. ||..++..|+.++.  ++.+++...+                        .-.+.+++|||||.+.|.|
T Consensus        38 ~KI~IIGaG~-VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~~~daDiVVitAG~~  116 (350)
T PLN02602         38 TKVSVVGVGN-VGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAVTAGSDLCIVTAGAR  116 (350)
T ss_pred             CEEEEECCCH-HHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHHhCCCCEEEECCCCC
Confidence            6999999977 69999999988883  6888875320                        1135589999999999965

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=93.74  E-value=0.098  Score=46.12  Aligned_cols=35  Identities=23%  Similarity=0.207  Sum_probs=31.6

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +|+++|.|+++.+|+.++..|+++|++|.++.|+.
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~   36 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINS   36 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            68999999999899999999999999998887653

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.73  E-value=0.11  Score=47.13  Aligned_cols=35  Identities=11%  Similarity=0.210  Sum_probs=30.9

Q ss_pred             CccceEEEEcCC---cccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g---~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++||.++|.|++   | +|++++..|+++|++|+++.|+
T Consensus         3 l~~k~~lItGas~~~G-IG~aiA~~la~~G~~Vil~~r~   40 (274)
T PRK08415          3 MKGKKGLIVGVANNKS-IAYGIAKACFEQGAELAFTYLN   40 (274)
T ss_pred             cCCcEEEEECCCCCCC-HHHHHHHHHHHCCCEEEEEecC
Confidence            579999999984   6 4999999999999999988765

>PRK06483 dihydromonapterin reductase; Provisional

Probab=93.73  E-value=0.095  Score=45.60  Aligned_cols=35  Identities=14%  Similarity=0.167  Sum_probs=31.7

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +|+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   36 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTH   36 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc
Confidence            57899999988889999999999999999988764

>PRK07831 short chain dehydrogenase; Provisional

Probab=93.72  E-value=0.11  Score=46.10  Aligned_cols=38  Identities=21%  Similarity=0.155  Sum_probs=31.6

Q ss_pred             CCccceEEEEcCCc-ccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSN-IVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~-~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .++||+++|.|+++ -+|+.++..|+++|++|+++.++.
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~   52 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE   52 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH
Confidence            35789999999853 359999999999999999887654

>PLN02206 UDP-glucuronate decarboxylase

Probab=93.70  E-value=0.17  Score=49.37  Aligned_cols=37  Identities=24%  Similarity=0.251  Sum_probs=32.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      ..-++++|+|.|++|.||+.++..|+++|.+|+++.+
T Consensus       115 ~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~  151 (442)
T PLN02206        115 LKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDN  151 (442)
T ss_pred             cccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeC
Confidence            3347899999999999999999999999999988764

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=93.68  E-value=0.22  Score=46.64  Aligned_cols=52  Identities=15%  Similarity=-0.001  Sum_probs=37.5

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      ||.....+..|.+...--.|.+++|.|+++.||..+++++..+|++|+.+.+
T Consensus       140 ~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~  191 (348)
T PLN03154        140 GMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAG  191 (348)
T ss_pred             ccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcC
Confidence            4444444555544333347999999999666899999999999998776644

>PRK12744 short chain dehydrogenase; Provisional

Probab=93.67  E-value=0.095  Score=46.29  Aligned_cols=35  Identities=20%  Similarity=0.259  Sum_probs=30.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEe
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVH  167 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~  167 (272)
                      .++||+++|.|+++-+|+.++..|+++|++|.++.
T Consensus         5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~   39 (257)
T PRK12744          5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIH   39 (257)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEe
Confidence            46899999999999999999999999999865554

>PRK07454 short chain dehydrogenase; Provisional

Probab=93.65  E-value=0.086  Score=45.94  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=32.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++|+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~   40 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQ   40 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            568999999988889999999999999999998764

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=93.64  E-value=0.13  Score=45.29  Aligned_cols=36  Identities=31%  Similarity=0.367  Sum_probs=31.9

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++.|.++|-|+|.-+||++++.|+++||+|.++..+
T Consensus        12 ~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~   47 (256)
T KOG1200|consen   12 LMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLD   47 (256)
T ss_pred             HhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecc
Confidence            467889999888778999999999999999999865

>PRK12746 short chain dehydrogenase; Provisional

Probab=93.64  E-value=0.081  Score=46.43  Aligned_cols=34  Identities=32%  Similarity=0.383  Sum_probs=30.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEE
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV  166 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~  166 (272)
                      ++++|+++|.|+++-+|+.++..|+++|++|.++
T Consensus         3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~   36 (254)
T PRK12746          3 NLDGKVALVTGASRGIGRAIAMRLANDGALVAIH   36 (254)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence            3678999999999999999999999999998775

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.60  E-value=0.1  Score=50.58  Aligned_cols=125  Identities=22%  Similarity=0.208  Sum_probs=67.8

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-CHh---hhcCCCcEEEEecCCCcc---ccCCCcCCCcEEEEeeeC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-NPE---QITSEADIVIAAAGVANL---VRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-~l~---~~l~~ADIVIsa~g~p~~---i~~~~vk~g~vviDig~~  210 (272)
                      +|+|+|.|++ |++++..|.++|++|+++++... ...   +.++...+-+.. |.+..   ++..+-+...+|+--|++
T Consensus         2 ~v~viG~G~s-G~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~-g~~~~~~~~~~~~~~~d~vv~s~gi~   79 (459)
T PRK02705          2 IAHVIGLGRS-GIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKL-GKPLELESFQPWLDQPDLVVVSPGIP   79 (459)
T ss_pred             eEEEEccCHH-HHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEE-CCccchhhhhHHhhcCCEEEECCCCC
Confidence            6899999997 99999999999999999986542 111   234333433311 21110   000111234556555555


Q ss_pred             CCCCCCCCCCCCCceEecccchhh-hhhhceEeccCCCcccHHHHHHHHHHHHHHH
Q 024116          211 PVDVSVDPSCEYGYRLMGDVCYEE-AMRLASVITPVPGGVGPMTVAMLLSNTLDSA  265 (272)
Q Consensus       211 ~~~~~~~~~~~~~~k~~Gdvd~~~-~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~  265 (272)
                      ++..........+-+++++.++.. ...... +--|-|-.|.=|+.-|+.++++..
T Consensus        80 ~~~~~~~~a~~~~i~v~~~~~~~~~~~~~~~-~I~VTGT~GKTTTt~ml~~iL~~~  134 (459)
T PRK02705         80 WDHPTLVELRERGIEVIGEIELAWRALKHIP-WVGITGTNGKTTVTALLAHILQAA  134 (459)
T ss_pred             CCCHHHHHHHHcCCcEEEhHHHHHHhhcCCC-EEEEeCCCchHHHHHHHHHHHHHc
Confidence            432000000001234666665421 111111 123568888999999999888754

>PRK07791 short chain dehydrogenase; Provisional

Probab=93.58  E-value=0.092  Score=47.69  Aligned_cols=36  Identities=19%  Similarity=0.256  Sum_probs=32.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++||+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~   39 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIG   39 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCC
Confidence            689999999999889999999999999999887653

>PRK06128 oxidoreductase; Provisional

Probab=93.55  E-value=0.12  Score=47.09  Aligned_cols=36  Identities=19%  Similarity=0.410  Sum_probs=32.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      .++||+++|.|+++-+|+.++..|+++|++|+++.+
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~   87 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYL   87 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence            378999999999888999999999999999887654

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=93.55  E-value=0.25  Score=44.67  Aligned_cols=76  Identities=20%  Similarity=0.127  Sum_probs=52.0

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------CH----hhhc--CCCcEEEEecCCCc
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------NP----EQIT--SEADIVIAAAGVAN  191 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-----------------~l----~~~l--~~ADIVIsa~g~p~  191 (272)
                      .+.+++|.|+++.+|..+++++..+|++|+++.++.+                 +.    ...+  +..|+|+.++|.+.
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~  225 (325)
T cd05280         146 EDGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLKSLGASEVLDREDLLDESKKPLLKARWAGAIDTVGGDV  225 (325)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEcchhHHHHHHHHhcCCCccEEEECCchHH
Confidence            4568999999777899999999999999877765321                 10    1111  24688888887653


Q ss_pred             cc-cCCCcCCCcEEEEeeeC
Q 024116          192 LV-RGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       192 ~i-~~~~vk~g~vviDig~~  210 (272)
                      +- --+.++++..++++|..
T Consensus       226 ~~~~~~~l~~~g~~v~~g~~  245 (325)
T cd05280         226 LANLLKQTKYGGVVASCGNA  245 (325)
T ss_pred             HHHHHHhhcCCCEEEEEecC
Confidence            31 22345677788898865

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=93.50  E-value=0.078  Score=48.81  Aligned_cols=37  Identities=19%  Similarity=0.148  Sum_probs=32.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++.+|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~   39 (322)
T PRK07453          3 QDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRN   39 (322)
T ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECC
Confidence            3578999999998888999999999999999988764

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=93.49  E-value=0.19  Score=48.61  Aligned_cols=53  Identities=26%  Similarity=0.204  Sum_probs=43.5

Q ss_pred             ccCCHHHHHH----HHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          116 IPCTPKGCIE----LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       116 ~p~Ta~g~~~----~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .++|++|+.-    .++..+.+++|++|.|=|.|+ ||..++..|.+.|++|+.+...
T Consensus       183 ~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG~GN-Vg~~aa~~l~~~GAkvva~sds  239 (411)
T COG0334         183 SEATGYGVFYAIREALKALGDDLEGARVAVQGFGN-VGQYAAEKLHELGAKVVAVSDS  239 (411)
T ss_pred             CcccceehHHHHHHHHHHcCCCcCCCEEEEECccH-HHHHHHHHHHHcCCEEEEEEcC
Confidence            3688888543    445677789999999999988 5999999999999998887644

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=93.48  E-value=0.21  Score=46.85  Aligned_cols=55  Identities=11%  Similarity=0.207  Sum_probs=41.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC-------EEEEEeCCC--------------------------CCHhhhcCCCcEE
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHA-------TVSIVHALT--------------------------KNPEQITSEADIV  183 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga-------~V~v~~~~t--------------------------~~l~~~l~~ADIV  183 (272)
                      +||.|||++|.||..++..|...|.       ++.+.+...                          .+.++.+++||||
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv   82 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA   82 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence            5899999945579999999988773       577776521                          1235789999999


Q ss_pred             EEecCCCc
Q 024116          184 IAAAGVAN  191 (272)
Q Consensus       184 Isa~g~p~  191 (272)
                      |.+.|.|.
T Consensus        83 vitaG~~~   90 (322)
T cd01338          83 LLVGAKPR   90 (322)
T ss_pred             EEeCCCCC
Confidence            99999753

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	272
4a26_A	300	The Crystal Structure Of Leishmania Major N5,N10- M		4e-71
1dia_A	306	Human Methylenetetrahydrofolate Dehydrogenase Cyclo		4e-62
1a4i_A	301	Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE		6e-62
4a5o_A	286	Crystal Structure Of Pseudomonas Aeruginosa N5, N10		1e-61
3p2o_A	285	Crystal Structure Of Fold Bifunctional Protein From		2e-60
1b0a_A	288	5,10, Methylene-Tetrahydropholate DehydrogenaseCYCL		1e-58
3l07_A	285	Methylenetetrahydrofolate DehydrogenaseMETHENYLTETR		9e-53
4b4u_A	303	Crystal Structure Of Acinetobacter Baumannii N5, N1		4e-51
2c2x_A	281	Three Dimensional Structure Of Bifunctional Methyle		2e-48
3ngl_A	276	Crystal Structure Of Bifunctional 5,10-Methylenetet		4e-33
1edz_A	320	Structure Of The Nad-Dependent 5,10- Methylenetetra		1e-10

>pdb|4A26|A Chain A, The Crystal Structure Of Leishmania Major N5,N10- Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE Length = 300

Iteration: 1
 Score =  264 bits (674), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 138/269 (51%), Positives = 183/269 (68%), Gaps = 5/269 (1%)
Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           G+VPGLA I+VG+R DS+ YV+ K KA  EVG+ S   E  +  +++ +   +   N D 
Sbjct: 35  GRVPGLASIIVGQRMDSKKYVQLKHKAAAEVGMASFNVELPEDISQEVLEVNVEKLNNDP 94
Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
           + +GI+VQLPLP+HL+E + ++ +   KD D   P+N+G L  +GREP F PCT KG I 
Sbjct: 95  NCHGIIVQLPLPKHLNENRAIEKIHPHKDADALLPVNVGLLHYKGREPPFTPCTAKGVIV 154
Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQIT--SEADIV 183
           LL R G+E+ GK AVV+GRSNIVG P + LL + +ATV+IVH+ T   + I     ADIV
Sbjct: 155 LLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDMIDYLRTADIV 214
Query: 184 IAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT 243
           IAA G    V+G W+K GA V+DVGT PV    DPS + GYRL+GDVC+EEA   A+ I+
Sbjct: 215 IAAMGQPGYVKGEWIKEGAAVVDVGTTPVP---DPSRKDGYRLVGDVCFEEAAARAAWIS 271
Query: 244 PVPGGVGPMTVAMLLSNTLDSAKRAYGFT 272
           PVPGGVGPMT+AMLL NTL++ K A G +
Sbjct: 272 PVPGGVGPMTIAMLLENTLEAFKAALGVS 300

>pdb|1DIA|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase Cyclohydrolase Complexed With Nadp And Inhibitor Ly249543 Length = 306

Iteration: 1
 Score =  234 bits (596), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 120/264 (45%), Positives = 176/264 (66%), Gaps = 5/264 (1%)
Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           G  P LA++ VG R DS  Y+  K+KA EE+GIK+   +     TE EV+  +++ N+DS
Sbjct: 33  GFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDS 92
Query: 66  SINGILVQLPLPQH--LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGC 123
           +++G LVQLPL     ++  ++++A++ EKDVDG   +N G LA       FIPCTPKGC
Sbjct: 93  TVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGC 152
Query: 124 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIV 183
           +EL+  +GV I G++AVV+GRS IVG P   LL  ++ATV+  H+ T + ++  ++ DI+
Sbjct: 153 LELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDIL 212
Query: 184 IAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT 243
           + A G   +V+G W+KPGA+V+D   C ++   D     G +++GDV Y+EA   AS IT
Sbjct: 213 VVATGQPEMVKGEWIKPGAIVID---CGINYVPDDKKPNGRKVVGDVAYDEAKERASFIT 269
Query: 244 PVPGGVGPMTVAMLLSNTLDSAKR 267
           PVPGGVGPMTVAML+ +T++SAKR
Sbjct: 270 PVPGGVGPMTVAMLMQSTVESAKR 293

>pdb|1A4I|A Chain A, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE Length = 301

Iteration: 1
 Score =  233 bits (595), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 120/264 (45%), Positives = 176/264 (66%), Gaps = 5/264 (1%)
Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           G  P LA++ VG R DS  Y+  K+KA EE+GIK+   +     TE EV+  +++ N+DS
Sbjct: 33  GFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDS 92
Query: 66  SINGILVQLPLPQH--LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGC 123
           +++G LVQLPL     ++  ++++A++ EKDVDG   +N G LA       FIPCTPKGC
Sbjct: 93  TVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGC 152
Query: 124 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIV 183
           +EL+  +GV I G++AVV+GRS IVG P   LL  ++ATV+  H+ T + ++  ++ DI+
Sbjct: 153 LELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDIL 212
Query: 184 IAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT 243
           + A G   +V+G W+KPGA+V+D   C ++   D     G +++GDV Y+EA   AS IT
Sbjct: 213 VVATGQPEMVKGEWIKPGAIVID---CGINYVPDDKKPNGRKVVGDVAYDEAKERASFIT 269
Query: 244 PVPGGVGPMTVAMLLSNTLDSAKR 267
           PVPGGVGPMTVAML+ +T++SAKR
Sbjct: 270 PVPGGVGPMTVAMLMQSTVESAKR 293

>pdb|4A5O|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa N5, N10- Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase (Fold) Length = 286

Iteration: 1
 Score =  233 bits (593), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 129/263 (49%), Positives = 167/263 (63%), Gaps = 11/263 (4%)
Query: 7   KVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSS 66
           +VPGLAVILVG    SQ YV +K K CEEVG  S   +     ++D++L  +   N D +
Sbjct: 34  RVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDDPA 93
Query: 67  INGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIEL 126
           I+GILVQLPLP HLD   +L+ +  +KDVDGFHP NIG LA   R PL  PCTPKG + L
Sbjct: 94  IDGILVQLPLPAHLDASLLLERIHPDKDVDGFHPYNIGRLAQ--RMPLLRPCTPKGIMTL 151
Query: 127 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAA 186
           L  +G ++ G +AVV+G SNIVG P +L L     TV++ H  T++     S AD+V+ A
Sbjct: 152 LASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHVSRADLVVVA 211
Query: 187 AGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVP 246
           AG   LV+G W+K GA+V+DVG          + +   RL+GDV YE A + AS ITPVP
Sbjct: 212 AGKPGLVKGEWIKEGAIVIDVGI---------NRQADGRLVGDVEYEVAAQRASWITPVP 262
Query: 247 GGVGPMTVAMLLSNTLDSAKRAY 269
           GGVGPMT A LL NTL +A+  +
Sbjct: 263 GGVGPMTRACLLENTLHAAEHLH 285

>pdb|3P2O|A Chain A, Crystal Structure Of Fold Bifunctional Protein From Campylobacter Jejuni Length = 285

Iteration: 1
 Score =  228 bits (582), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 126/265 (47%), Positives = 173/265 (65%), Gaps = 10/265 (3%)
Query: 3   KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
           KS G    LAVILVG+   SQTYV++K KACEE GIKS+V    +  T++E+L  ++  N
Sbjct: 28  KSKGIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENITQNELLALINTLN 87
Query: 63  QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
            D S++GILVQLPLP H+ +  IL+++   KDVDGFHP+N+G L + G E  F+PCTP G
Sbjct: 88  HDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNL-GLESGFLPCTPLG 146
Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADI 182
             +LL    +++ GK+AV+IG SNIVG P +  L    ATVS+ H  TK+    T +AD+
Sbjct: 147 VXKLLKAYEIDLEGKDAVIIGASNIVGRPXATXLLNAGATVSVCHIKTKDLSLYTRQADL 206
Query: 183 VIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVI 242
           +I AAG  NL+R   +K G +V+DVG   ++           +++GDV +EE  + +S I
Sbjct: 207 IIVAAGCVNLLRSDXVKEGVIVVDVGINRLESG---------KIVGDVDFEEVSKKSSYI 257
Query: 243 TPVPGGVGPMTVAMLLSNTLDSAKR 267
           TPVPGGVGP T+A LL NT+ SAK 
Sbjct: 258 TPVPGGVGPXTIAXLLENTVKSAKN 282

>pdb|1B0A|A Chain A, 5,10, Methylene-Tetrahydropholate DehydrogenaseCYCLOHYDROLASE FROM E COLI Length = 288

Iteration: 1
 Score =  223 bits (567), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 121/258 (46%), Positives = 159/258 (61%), Gaps = 11/258 (4%)
Query: 7   KVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSS 66
           + PGLAV+LVG    SQ YV +K KACEEVG  S   +  +  +E E+L  +   N D++
Sbjct: 32  RAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNT 91
Query: 67  INGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIEL 126
           I+GILVQLPLP  +D  K+L+ +  +KDVDGFHP N+G L  R   P   PCTP+G + L
Sbjct: 92  IDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRA--PRLRPCTPRGIVTL 149
Query: 127 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAA 186
           L R  ++  G NAVVIG SNIVG P S+ L     T ++ H  TKN       AD++I A
Sbjct: 150 LERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVA 209
Query: 187 AGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVP 246
            G    + G W+K GA+V+DVG            E G +++GDV +E+A + AS ITPVP
Sbjct: 210 VGKPGFIPGDWIKEGAIVIDVGIN--------RLENG-KVVGDVVFEDAAKRASYITPVP 260
Query: 247 GGVGPMTVAMLLSNTLDS 264
           GGVGPMTVA L+ NTL +
Sbjct: 261 GGVGPMTVATLIENTLQA 278

>pdb|3L07|A Chain A, Methylenetetrahydrofolate DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase, Putative Bifunctional Protein Fold From Francisella Tularensis. Length = 285

Iteration: 1
 Score =  203 bits (516), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 112/259 (43%), Positives = 154/259 (59%), Gaps = 11/259 (4%)
Query: 9   PGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 68
           P L  I+VG    S+TYV +K KAC +VGI S V    +  TE E+L  +   N DSS++
Sbjct: 35  PKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVH 94
Query: 69  GILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLI 128
            ILVQLPLP H+++  ++ ++  EKDVDGFHP N+G L +R ++ L   CTPKG + +L 
Sbjct: 95  AILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLE-SCTPKGIMTMLR 153
Query: 129 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAG 188
             G++  G  AVV+G SN+VG P S LL    ATV+  H  T + +  T++ADI+I A G
Sbjct: 154 EYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVG 213
Query: 189 VANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG 248
             N +    +K GAVV+DVG   VD           +++GDV +       + ITPVPGG
Sbjct: 214 KPNFITADMVKEGAVVIDVGINHVD----------GKIVGDVDFAAVKDKVAAITPVPGG 263
Query: 249 VGPMTVAMLLSNTLDSAKR 267
           VGPMT+  LL NT   A+ 
Sbjct: 264 VGPMTITELLYNTFQCAQE 282

>pdb|4B4U|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5, N10-Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp Cofactor Length = 303

Iteration: 1
 Score =  197 bits (502), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 108/270 (40%), Positives = 161/270 (59%), Gaps = 12/270 (4%)
Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           +K   G+ P LA ILVG+   S TYVR K  AC  VG+ S+  E     T +++L  +  
Sbjct: 46  LKAKTGRTPILATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQETTTEQLLAEIEK 105
Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N +  ++GIL+Q P+P  +DE    DA+SL KDVDG   L  G +AM   E  +   TP
Sbjct: 106 LNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATP 163
Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
            G + +L  + +EI GK+AVV+GRS I+G P +++L + +ATV+I H+ T+N  ++  +A
Sbjct: 164 AGIMTILKENNIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRTQNLPELVKQA 223
Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           DI++ A G A L++  W+K GAVV+D G  P D             +GD+  +    +AS
Sbjct: 224 DIIVGAVGKAELIQKDWIKQGAVVVDAGFHPRDGGG----------VGDIQLQGIEEIAS 273
Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAYG 270
             TPVPGGVGPMT+  L+  T+++A++A G
Sbjct: 274 AYTPVPGGVGPMTITTLIRQTVEAAEKALG 303

>pdb|2C2X|A Chain A, Three Dimensional Structure Of Bifunctional Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase From Mycobacterium Tuberculosis Length = 281

Iteration: 1
 Score =  189 bits (479), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/266 (41%), Positives = 152/266 (57%), Gaps = 15/266 (5%)
Query: 4   SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQ 63
           + G+ PGL  ILVG+   SQ YVR K   C +VGI SI  +     +   +   +   N 
Sbjct: 28  AAGRTPGLGTILVGDDPGSQAYVRGKHADCAKVGITSIRRDLPADISTATLNETIDELNA 87
Query: 64  DSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGC 123
           +    G +VQLPLP+HLDE   L+ V   KD DG HP N+G L +    PL  PCTP+G 
Sbjct: 88  NPDCTGYIVQLPLPKHLDENAALERVDPAKDADGLHPTNLGRLVLGTPAPL--PCTPRGI 145
Query: 124 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALTKNPEQITSEAD 181
           + LL R  + I G + VVIGR   VG P  LLL R   +ATV++ H  T++   +T +AD
Sbjct: 146 VHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLPALTRQAD 205
Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASV 241
           IV+AA GVA+L+    ++PGA V+DVG    D            L+GDV + +   LA  
Sbjct: 206 IVVAAVGVAHLLTADMVRPGAAVIDVGVSRTDDG----------LVGDV-HPDVWELAGH 254
Query: 242 ITPVPGGVGPMTVAMLLSNTLDSAKR 267
           ++P PGGVGP+T A LL+N ++ A+R
Sbjct: 255 VSPNPGGVGPLTRAFLLTNVVELAER 280

>pdb|3NGL|A Chain A, Crystal Structure Of Bifunctional 5,10-Methylenetetrahydrofolate Dehydrogenase CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM Length = 276

Iteration: 1
 Score =  138 bits (347), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 141/262 (53%), Gaps = 17/262 (6%)
Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           G  P L +I +G+   +  Y R KI+  +++GI   + ++ D   +D +L  + +  +D 
Sbjct: 25  GLEPSLKLIQIGDNEAASIYARAKIRRGKKIGIAVDLEKYDDISMKD-LLKRIDDLAKDP 83
Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
            INGI+++ PLP+  D  +I+  +   KDVD   P N G +A+  RE   +P TP+  I+
Sbjct: 84  QINGIMIENPLPKGFDYYEIVRNIPYYKDVDALSPYNQGLIAL-NRE-FLVPATPRAVID 141
Query: 126 LLIRSGVEIMGKNAV-VIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVI 184
           ++   G     +N V ++ RS +VG P S++L   + TVS+ H+ TK+   +T  + IV+
Sbjct: 142 IMDYYGYH---ENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSMTRSSKIVV 198
Query: 185 AAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITP 244
            A G    +    + PG+VV+DVG   V+  V          +GD  +E+       ITP
Sbjct: 199 VAVGRPGFLNREMVTPGSVVIDVGINYVNDKV----------VGDANFEDLSEYVEAITP 248
Query: 245 VPGGVGPMTVAMLLSNTLDSAK 266
           VPGGVGP+T   +L N + +A+
Sbjct: 249 VPGGVGPITATNILENVVKAAE 270

>pdb|1EDZ|A Chain A, Structure Of The Nad-Dependent 5,10- Methylenetetrahydrofolate Dehydrogenase From Saccharomyces Cerevisiae Length = 320

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 118/288 (40%), Gaps = 44/288 (15%)
Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           G+ P L   L      ++ Y     K  E +G +  +    D   +D +  A+   N D 
Sbjct: 34  GQGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDLRVIED---KDFLEEAIIQANGDD 90
Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPL-------NIGNLAMRGREPLFIPC 118
           S+NGI+V  P+  +  +  +   V  EKDV+G + +       N+  L    R    +PC
Sbjct: 91  SVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEGLNHVYYQNLYHNVRYLDKENRLKSILPC 150
Query: 119 TPKGCIEL---------LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 169
           TP   +++         L+  G  + GK  +VI RS IVG P + LL    ATV  V   
Sbjct: 151 TPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDV- 209
Query: 170 TKNPEQITSEADIVIAAAGVANLVRGS--WLKPGAVVLDVGTCPVDVSVDPSCEYG---- 223
             N ++ T    + +    V +L   S   LK  ++  DV    V     PS  Y     
Sbjct: 210 -NNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGV-----PSENYKFPTE 263
Query: 224 YRLMGDVCY---------EEAMRLASVITPVPGGVGPMTVAMLLSNTL 262
           Y   G VC          ++    AS+  P+ G V   T+AMLL N L
Sbjct: 264 YIKEGAVCINFACTKNFSDDVKEKASLYVPMTGKV---TIAMLLRNML 308

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	272
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	1e-159
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	1e-156
3l07_A	285	Bifunctional protein fold; structural genomics, ID	1e-143
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	1e-143
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	1e-143
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	1e-143
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	1e-137
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	1e-133
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	1e-112
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	3e-09
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	4e-04

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} Length = 300

 Score =  442 bits (1139), Expect = e-159
 Identities = 137/271 (50%), Positives = 183/271 (67%), Gaps = 5/271 (1%)

Query: 2   KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNY 61
           +   G+VPGLA I+VG+R DS+ YV+ K KA  EVG+ S   E  +  +++ +   +   
Sbjct: 31  ELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEVGMASFNVELPEDISQEVLEVNVEKL 90

Query: 62  NQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPK 121
           N D + +GI+VQLPLP+HL+E + ++ +   KD D   P+N+G L  +GREP F PCT K
Sbjct: 91  NNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDADALLPVNVGLLHYKGREPPFTPCTAK 150

Query: 122 GCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL--TKNPEQITSE 179
           G I LL R G+E+ GK AVV+GRSNIVG P + LL + +ATV+IVH+   T++       
Sbjct: 151 GVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDMIDYLRT 210

Query: 180 ADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLA 239
           ADIVIAA G    V+G W+K GA V+DVGT PV    DPS + GYRL+GDVC+EEA   A
Sbjct: 211 ADIVIAAMGQPGYVKGEWIKEGAAVVDVGTTPVP---DPSRKDGYRLVGDVCFEEAAARA 267

Query: 240 SVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 270
           + I+PVPGGVGPMT+AMLL NTL++ K A G
Sbjct: 268 AWISPVPGGVGPMTIAMLLENTLEAFKAALG 298

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* Length = 301

 Score =  436 bits (1125), Expect = e-156
 Identities = 121/271 (44%), Positives = 177/271 (65%), Gaps = 5/271 (1%)

Query: 2   KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNY 61
           ++  G  P LA++ VG R DS  Y+  K+KA EE+GIK+   +     TE EV+  +++ 
Sbjct: 29  EQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSL 88

Query: 62  NQDSSINGILVQLPLPQH--LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCT 119
           N+DS+++G LVQLPL     ++  ++++A++ EKDVDG   +N G LA       FIPCT
Sbjct: 89  NEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCT 148

Query: 120 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSE 179
           PKGC+EL+  +GV I G++AVV+GRS IVG P   LL  ++ATV+  H+ T + ++  ++
Sbjct: 149 PKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNK 208

Query: 180 ADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLA 239
            DI++ A G   +V+G W+KPGA+V+D G   V    D     G +++GDV Y+EA   A
Sbjct: 209 GDILVVATGQPEMVKGEWIKPGAIVIDCGINYVP---DDKKPNGRKVVGDVAYDEAKERA 265

Query: 240 SVITPVPGGVGPMTVAMLLSNTLDSAKRAYG 270
           S ITPVPGGVGPMTVAML+ +T++SAKR   
Sbjct: 266 SFITPVPGGVGPMTVAMLMQSTVESAKRFLE 296

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} Length = 285

 Score =  403 bits (1039), Expect = e-143
 Identities = 112/268 (41%), Positives = 153/268 (57%), Gaps = 11/268 (4%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
            K      P L  I+VG    S+TYV +K KAC +VGI S V    +  TE E+L  +  
Sbjct: 27  YKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQ 86

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N DSS++ ILVQLPLP H+++  ++ ++  EKDVDGFHP N+G L +R  +     CTP
Sbjct: 87  LNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRD-KKCLESCTP 145

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KG + +L   G++  G  AVV+G SN+VG P S LL    ATV+  H  T + +  T++A
Sbjct: 146 KGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKA 205

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           DI+I A G  N +    +K GAVV+DVG   VD           +++GDV +       +
Sbjct: 206 DILIVAVGKPNFITADMVKEGAVVIDVGINHVD----------GKIVGDVDFAAVKDKVA 255

Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRA 268
            ITPVPGGVGPMT+  LL NT   A+  
Sbjct: 256 AITPVPGGVGPMTITELLYNTFQCAQEL 283

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 Length = 288

 Score =  403 bits (1038), Expect = e-143
 Identities = 119/271 (43%), Positives = 162/271 (59%), Gaps = 11/271 (4%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
              +  + PGLAV+LVG    SQ YV +K KACEEVG  S   +  +  +E E+L  +  
Sbjct: 26  RIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDT 85

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N D++I+GILVQLPLP  +D  K+L+ +  +KDVDGFHP N+G L    R P   PCTP
Sbjct: 86  LNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQ--RAPRLRPCTP 143

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           +G + LL R  ++  G NAVVIG SNIVG P S+ L     T ++ H  TKN       A
Sbjct: 144 RGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENA 203

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           D++I A G    + G W+K GA+V+DVG   ++   +       +++GDV +E+A + AS
Sbjct: 204 DLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLE---NG------KVVGDVVFEDAAKRAS 254

Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAYGF 271
            ITPVPGGVGPMTVA L+ NTL +    +  
Sbjct: 255 YITPVPGGVGPMTVATLIENTLQACVEYHDP 285

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} Length = 286

 Score =  403 bits (1037), Expect = e-143
 Identities = 129/269 (47%), Positives = 167/269 (62%), Gaps = 11/269 (4%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
            ++   +VPGLAVILVG    SQ YV +K K CEEVG  S   +     ++D++L  +  
Sbjct: 28  RRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDR 87

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N D +I+GILVQLPLP HLD   +L+ +  +KDVDGFHP NIG LA   R PL  PCTP
Sbjct: 88  LNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVDGFHPYNIGRLAQ--RMPLLRPCTP 145

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KG + LL  +G ++ G +AVV+G SNIVG P +L L     TV++ H  T++     S A
Sbjct: 146 KGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHVSRA 205

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           D+V+ AAG   LV+G W+K GA+V+DVG                RL+GDV YE A + AS
Sbjct: 206 DLVVVAAGKPGLVKGEWIKEGAIVIDVGINRQA---------DGRLVGDVEYEVAAQRAS 256

Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKRAY 269
            ITPVPGGVGPMT A LL NTL +A+  +
Sbjct: 257 WITPVPGGVGPMTRACLLENTLHAAEHLH 285

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} Length = 285

 Score =  402 bits (1036), Expect = e-143
 Identities = 128/265 (48%), Positives = 177/265 (66%), Gaps = 10/265 (3%)

Query: 3   KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
           KS G    LAVILVG+   SQTYV++K KACEE GIKS+V    +  T++E+L  ++  N
Sbjct: 28  KSKGIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENITQNELLALINTLN 87

Query: 63  QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
            D S++GILVQLPLP H+ +  IL+++   KDVDGFHP+N+G L + G E  F+PCTP G
Sbjct: 88  HDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNL-GLESGFLPCTPLG 146

Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADI 182
            ++LL    +++ GK+AV+IG SNIVG P + +L    ATVS+ H  TK+    T +AD+
Sbjct: 147 VMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADL 206

Query: 183 VIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVI 242
           +I AAG  NL+R   +K G +V+DVG   ++           +++GDV +EE  + +S I
Sbjct: 207 IIVAAGCVNLLRSDMVKEGVIVVDVGINRLESG---------KIVGDVDFEEVSKKSSYI 257

Query: 243 TPVPGGVGPMTVAMLLSNTLDSAKR 267
           TPVPGGVGPMT+AMLL NT+ SAK 
Sbjct: 258 TPVPGGVGPMTIAMLLENTVKSAKN 282

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A Length = 276

 Score =  385 bits (992), Expect = e-137
 Identities = 79/266 (29%), Positives = 138/266 (51%), Gaps = 15/266 (5%)

Query: 2   KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNY 61
            +  G  P L +I +G+   +  Y R KI+  +++GI   + ++ D  +  ++L  + + 
Sbjct: 21  IERSGLEPSLKLIQIGDNEAASIYARAKIRRGKKIGIAVDLEKYDD-ISMKDLLKRIDDL 79

Query: 62  NQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPK 121
            +D  INGI+++ PLP+  D  +I+  +   KDVD   P N G +A+       +P TP+
Sbjct: 80  AKDPQINGIMIENPLPKGFDYYEIVRNIPYYKDVDALSPYNQGLIALN--REFLVPATPR 137

Query: 122 GCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEAD 181
             I+++   G         ++ RS +VG P S++L   + TVS+ H+ TK+   +T  + 
Sbjct: 138 AVIDIMDYYGYH--ENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSMTRSSK 195

Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASV 241
           IV+ A G    +    + PG+VV+DVG   V+           +++GD  +E+       
Sbjct: 196 IVVVAVGRPGFLNREMVTPGSVVIDVGINYVND----------KVVGDANFEDLSEYVEA 245

Query: 242 ITPVPGGVGPMTVAMLLSNTLDSAKR 267
           ITPVPGGVGP+T   +L N + +A+ 
Sbjct: 246 ITPVPGGVGPITATNILENVVKAAEF 271

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A Length = 281

 Score =  377 bits (971), Expect = e-133
 Identities = 110/267 (41%), Positives = 152/267 (56%), Gaps = 15/267 (5%)

Query: 3   KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
            + G+ PGL  ILVG+   SQ YVR K   C +VGI SI  +     +   +   +   N
Sbjct: 27  DAAGRTPGLGTILVGDDPGSQAYVRGKHADCAKVGITSIRRDLPADISTATLNETIDELN 86

Query: 63  QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
            +    G +VQLPLP+HLDE   L+ V   KD DG HP N+G L +    P  +PCTP+G
Sbjct: 87  ANPDCTGYIVQLPLPKHLDENAALERVDPAKDADGLHPTNLGRLVL--GTPAPLPCTPRG 144

Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR--HHATVSIVHALTKNPEQITSEA 180
            + LL R  + I G + VVIGR   VG P  LLL R   +ATV++ H  T++   +T +A
Sbjct: 145 IVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLPALTRQA 204

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS 240
           DIV+AA GVA+L+    ++PGA V+DVG    D            L+GDV + +   LA 
Sbjct: 205 DIVVAAVGVAHLLTADMVRPGAAVIDVGVSRTDD----------GLVGDV-HPDVWELAG 253

Query: 241 VITPVPGGVGPMTVAMLLSNTLDSAKR 267
            ++P PGGVGP+T A LL+N ++ A+R
Sbjct: 254 HVSPNPGGVGPLTRAFLLTNVVELAER 280

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* Length = 320

 Score =  325 bits (836), Expect = e-112
 Identities = 70/308 (22%), Positives = 112/308 (36%), Gaps = 66/308 (21%)

Query: 2   KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNY 61
           K   G+ P L   L      ++ Y     K  E +G +  +        +D +  A+   
Sbjct: 30  KTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDLRVIE---DKDFLEEAIIQA 86

Query: 62  NQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNL-------AMRGREPL 114
           N D S+NGI+V  P+  +  +  +   V  EKDV+G + +   NL           R   
Sbjct: 87  NGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEGLNHVYYQNLYHNVRYLDKENRLKS 146

Query: 115 FIPCTPKGCIELL---------IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSI 165
            +PCTP   +++L         +  G  + GK  +VI RS IVG P + LL    ATV  
Sbjct: 147 ILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYS 206

Query: 166 VHALTKN-------------------------PEQITSEADIVIAAAGVAN-LVRGSWLK 199
           V                                ++ + ++D+VI      N      ++K
Sbjct: 207 VDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIK 266

Query: 200 PGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLS 259
            GAV ++                          ++    AS+  P+ G V   T+AMLL 
Sbjct: 267 EGAVCINFACTKNF------------------SDDVKEKASLYVPMTGKV---TIAMLLR 305

Query: 260 NTLDSAKR 267
           N L   + 
Sbjct: 306 NMLRLVRN 313

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 55.7 bits (134), Expect = 3e-09
 Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 33/163 (20%)

Query: 119 TPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQIT 177
           T +G I + I+ +   I G N  V+G   + G+  +       A V +    +    +I 
Sbjct: 137 TAEGTIMMAIQHTDFTIHGANVAVLGLGRV-GMSVARKFAALGAKVKVGARESDLLARIA 195

Query: 178 S----------------EADIVIAA--AGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPS 219
                            + D+ I    A V      + +     V+D+ + P       +
Sbjct: 196 EMGMEPFHISKAAQELRDVDVCINTIPALVVTANVLAEMPSHTFVIDLASKPGGTDFRYA 255

Query: 220 CEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 262
            + G + +              +  +PG V P T   +L++ L
Sbjct: 256 EKRGIKALL-------------VPGLPGIVAPKTAGRILADVL 285

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} Length = 300

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 29/167 (17%), Positives = 50/167 (29%), Gaps = 41/167 (24%)

Query: 119 TPKGCIELLI-RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV----------- 166
           T +G I L I  +   I G    V+G     G+  +       A V +            
Sbjct: 139 TVEGTIMLAIQHTDYTIHGSQVAVLG-LGRTGMTIARTFAALGANVKVGARSSAHLARIT 197

Query: 167 -----HALTKNPEQITSEADIVIAAAGVANLVRG--SWLKPGAVVLDVGTCPVDVSVDPS 219
                   T   ++   + DI I       L +   S + P  ++       +D++  P 
Sbjct: 198 EMGLVPFHTDELKEHVKDIDICINTIPSMILNQTVLSSMTPKTLI-------LDLASRPG 250

Query: 220 CEYGYRLMGDVCYEEAMRLASVI----TPVPGGVGPMTVAMLLSNTL 262
                         +      +       +PG V P T   +L+N L
Sbjct: 251 G----------TDFKYAEKQGIKALLAPGLPGIVAPKTAGQILANVL 287

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	272
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	100.0
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	100.0
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	100.0
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	100.0
3l07_A	285	Bifunctional protein fold; structural genomics, ID	100.0
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	100.0
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	100.0
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	100.0
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	100.0
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	100.0
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	99.97
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	99.97
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	99.96
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	99.96
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	99.96
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	99.96
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	99.96
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	99.96
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.95
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.95
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	99.95
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	99.95
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	99.95
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	99.94
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	99.93
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	99.92
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	99.92
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	99.76
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	99.64
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	99.41
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.16
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	99.07
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.06
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.93
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	98.89
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.85
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	98.84
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.81
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.75
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.69
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	98.64
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	98.63
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.6
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	98.57
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.54
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	98.5
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.47
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	98.45
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	98.39
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	98.37
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	98.35
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.35
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	98.33
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	98.32
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	98.28
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	98.28
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.27
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	98.25
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	98.24
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.23
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	98.22
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	98.21
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	98.21
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	98.2
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	98.2
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	98.2
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	98.18
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.17
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	98.17
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	98.16
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	98.16
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	98.14
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	98.14
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	98.13
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	98.12
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.09
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	98.09
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	98.08
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	98.07
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	98.06
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	98.02
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	98.01
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	98.0
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	97.99
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.98
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	97.98
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.97
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.97
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.95
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	97.94
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	97.93
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	97.87
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.81
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.8
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.78
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.73
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.71
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.7
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.69
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.66
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.64
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.63
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.62
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.57
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.57
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.57
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.55
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.51
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.51
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.48
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.44
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.43
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.43
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.4
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.4
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.4
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.36
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.36
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.32
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.27
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.27
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.26
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.2
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.17
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.17
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.16
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.15
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.15
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.13
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	96.18
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.1
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.08
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.08
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.07
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.04
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.03
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.0
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.96
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.95
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	96.95
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	96.95
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	96.94
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	96.94
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	96.94
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.93
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	96.92
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.92
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.91
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.91
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	96.88
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.88
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.86
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.84
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	96.84
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.84
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	96.83
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.82
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	96.81
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	96.8
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	96.8
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	96.8
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.8
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	96.79
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	96.78
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	96.77
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.76
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	96.76
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.76
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	96.75
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	96.75
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	96.74
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.73
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	96.72
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	96.72
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.72
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	96.71
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	96.71
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.71
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	96.7
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.7
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.7
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.69
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	96.69
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	96.68
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.67
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.67
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.67
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.66
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.66
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.65
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	96.65
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	96.65
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	96.65
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	96.64
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.64
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	96.63
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	96.63
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.62
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	96.62
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.61
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.6
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.6
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	96.59
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.58
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	96.58
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.58
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	96.56
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.56
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.56
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	96.55
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	96.55
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	96.55
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.55
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.55
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	96.54
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	96.54
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	96.54
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.54
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	96.54
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	96.53
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.53
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	96.53
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.53
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	96.52
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.52
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	96.52
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	96.51
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	96.51
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	96.5
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.47
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.47
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.47
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	96.46
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	96.46
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.45
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	96.44
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	96.44
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	96.43
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	96.42
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.42
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.41
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.41
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.4
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	96.39
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	96.39
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	96.39
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	96.38
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	96.37
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.37
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.37
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.36
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	96.36
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.36
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	96.36
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	96.36
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.35
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	96.34
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.34
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.34
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	96.34
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.34
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	96.33
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	96.33
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.32
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	96.32
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.32
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.31
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.31
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	96.31
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.3
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	96.3
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	96.29
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.29
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	96.29
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	96.29
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	96.29
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	96.28
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.28
3imf_A	257	Short chain dehydrogenase; structural genomics, in	96.28
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	96.27
4dqx_A	277	Probable oxidoreductase protein; structural genomi	96.26
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	96.26
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	96.26
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	96.26
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	96.26
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.25
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.25
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.24
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	96.24
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	96.24
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	96.24
1xq1_A	266	Putative tropinone reducatse; structural genomics,	96.23
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	96.23
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.23
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	96.22
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.22
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	96.22
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	96.21
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	96.2
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.2
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	96.2
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	96.19
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	96.19
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	96.18
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.18
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.17
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	96.17
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.13
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	96.13
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.12
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	96.12
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.12
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	96.12
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	96.11
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	96.1
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.1
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	96.1
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.1
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	96.1
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.09
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.06
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	96.06
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.06
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	96.05
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	96.05
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	96.04
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	96.04
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	96.03
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	96.03
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	96.03
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.03
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	96.03
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	96.02
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	96.01
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	96.01
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	96.01
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	96.01
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	96.0
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	95.99
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	95.99
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	95.98
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	95.98
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	95.98
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	95.98
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	95.97
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.97
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	95.97
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	95.96
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.95
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	95.94
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	95.94
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	95.94
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	95.93
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	95.92
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	95.92
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	95.91
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.9
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	95.9
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	95.9
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	95.9
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	95.9
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	95.9
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	95.9
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.9
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	95.89
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	95.89
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	95.88
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	95.88
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	95.87
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	95.87
3rih_A	293	Short chain dehydrogenase or reductase; structural	95.86
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	95.86
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	95.86
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	95.86
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	95.86
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.86
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.85
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	95.85
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	95.85
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.85
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	95.85
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	95.84
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.84
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.84
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	95.83
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	95.83
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	95.82
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	95.82
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	95.8
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	95.8
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.8
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	95.8
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	95.79
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.79
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	95.78
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	95.77
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	95.77
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	95.76
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.76
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.75
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	95.75
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.75
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	95.74
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	95.74
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	95.73
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	95.73
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	95.72
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	95.72
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	95.71
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	95.71
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	95.7
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	95.7
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.7
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	95.69
3q98_A	399	Transcarbamylase; rossmann fold, transferase; 2.00	95.68
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	95.68
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	95.67
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	95.66
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	95.66
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	95.66
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	95.65
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	95.65
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	95.64
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	95.63
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	95.63
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	95.63
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	95.61
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	95.61
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	95.61
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	95.6
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	95.6
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	95.6
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	95.59
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	95.59
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	95.58
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	95.57
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.57
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	95.56
3tl2_A	315	Malate dehydrogenase; center for structural genomi	95.56
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.56
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.56
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.55
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.55
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	95.54
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.54
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	95.54
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	95.54
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	95.53
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	95.53
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	95.53
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	95.53
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	95.51
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	95.51
2duw_A	145	Putative COA-binding protein; ligand binding prote	95.5
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	95.49
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	95.48
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	95.48
2yfk_A	418	Aspartate/ornithine carbamoyltransferase; transcar	95.47
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.47
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	95.47
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	95.46
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.46
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	95.46
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.46
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	95.46
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	95.46
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	95.45
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	95.45
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	95.44
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	95.44
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	95.43
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	95.43
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	95.43
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	95.42
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	95.42
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	95.41
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.41
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	95.41
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	95.41
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	95.4
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	95.38
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	95.38
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	95.38
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	95.37
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.37
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	95.37
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	95.36
4f6c_A	427	AUSA reductase domain protein; thioester reductase	95.35
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	95.35
1xkq_A	280	Short-chain reductase family member (5D234); parra	95.34
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	95.33
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	95.33
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	95.32
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	95.32
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	95.31
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	95.31
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	95.31
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	95.31
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	95.31
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	95.3

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=100.00  E-value=2.4e-86  Score=605.11  Aligned_cols=256  Identities=42%  Similarity=0.713  Sum_probs=249.6

Q ss_pred             CCCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCH
Q 024116            3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDE   82 (272)
Q Consensus         3 ~~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~   82 (272)
                      ++.|++|+||+|+||+||+|..|++.|.|+|+++||+++.++||++++|+||++.|++||+|++||||+||+|||+|+|+
T Consensus        48 ~~~g~~P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~s~~~~lp~~~se~ell~~I~~LN~D~~V~GIlVQlPLP~hid~  127 (303)
T 4b4u_A           48 AKTGRTPILATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQETTTEQLLAEIEKLNANPDVHGILLQHPVPAQIDE  127 (303)
T ss_dssp             HHHSCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCH
T ss_pred             HcCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEecCccCCHHHHHHHHHHhcCCCCccEEEEeCCCccccCh
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE
Q 024116           83 GKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT  162 (272)
Q Consensus        83 ~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~  162 (272)
                      ++++++|+|+|||||||+.|.|+|+.|  .+.|+||||.|++++|++|+++++||+++|||||.+||||++++|+++|||
T Consensus       128 ~~i~~~I~p~KDVDG~hp~N~G~L~~g--~~~~~PcTp~gv~~lL~~~~i~l~Gk~vvViGRS~iVGkPla~LL~~~~AT  205 (303)
T 4b4u_A          128 RACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATPAGIMTILKENNIEIAGKHAVVVGRSAILGKPMAMMLLQANAT  205 (303)
T ss_dssp             HHHHHHSCGGGCTTCCCHHHHHHHHTT--CCCCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCE
T ss_pred             HHHHhccCcccccCccCcchHHHhcCC--CCcccCccHHHHHHHHHHHCCCCCCCEEEEEeccccccchHHHHHHhcCCE
Confidence            999999999999999999999999976  678999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEe
Q 024116          163 VSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVI  242 (272)
Q Consensus       163 V~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~  242 (272)
                      ||+||++|++|++++++|||||+|+|+|++++++|+|+|++|||+|+|+.+          ++++|||||+++++++++|
T Consensus       206 VTi~Hs~T~dl~~~~~~ADIvV~A~G~p~~i~~d~vk~GavVIDVGin~~~----------~~~vGDVdf~~v~~~a~~i  275 (303)
T 4b4u_A          206 VTICHSRTQNLPELVKQADIIVGAVGKAELIQKDWIKQGAVVVDAGFHPRD----------GGGVGDIQLQGIEEIASAY  275 (303)
T ss_dssp             EEEECTTCSSHHHHHHTCSEEEECSCSTTCBCGGGSCTTCEEEECCCBCCT----------TSCBCSBCCTTGGGTCSEE
T ss_pred             EEEecCCCCCHHHHhhcCCeEEeccCCCCccccccccCCCEEEEeceecCC----------CCeECCcCHHHHhhhCcEE
Confidence            999999999999999999999999999999999999999999999999875          5789999999999999999


Q ss_pred             ccCCCcccHHHHHHHHHHHHHHHHHHhC
Q 024116          243 TPVPGGVGPMTVAMLLSNTLDSAKRAYG  270 (272)
Q Consensus       243 tpvpGGvGp~T~amL~~n~v~a~~~~~~  270 (272)
                      |||||||||||++|||+|+++|+||++|
T Consensus       276 TPVPGGVGPmTiamLl~Ntv~aa~r~~G  303 (303)
T 4b4u_A          276 TPVPGGVGPMTITTLIRQTVEAAEKALG  303 (303)
T ss_dssp             CCSSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999886

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=100.00  E-value=2.3e-83  Score=586.66  Aligned_cols=266  Identities=52%  Similarity=0.856  Sum_probs=253.3

Q ss_pred             CCC-CCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCH
Q 024116            4 SIG-KVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDE   82 (272)
Q Consensus         4 ~~~-~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~   82 (272)
                      +.| ++|+||+|+||+||+|..|+++|.|+|+++||++++++||++++|+||++.|++||+|++||||+||+|||+|+|+
T Consensus        32 ~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~  111 (300)
T 4a26_A           32 LYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEVGMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNE  111 (300)
T ss_dssp             HTTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSCCCTTSCH
T ss_pred             hCCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCH
Confidence            346 8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE
Q 024116           83 GKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT  162 (272)
Q Consensus        83 ~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~  162 (272)
                      ++++++|+|+|||||+|++|.|+|+.|...++|+||||+|++++|++|+++++||+|+|||+|++||+|++++|+++||+
T Consensus       112 ~~v~~~I~p~KDVDG~~~~N~G~l~~g~~~~~~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAt  191 (300)
T 4a26_A          112 NRAIEKIHPHKDADALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENAT  191 (300)
T ss_dssp             HHHHHTSCGGGCTTCCSHHHHHHHHCTTCCCSCCCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCE
T ss_pred             HHHHhhCCcccccccCCcceEEEeecCCCcCCCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCe
Confidence            99999999999999999999999997744678999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCHh--hhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhce
Q 024116          163 VSIVHALTKNPE--QITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS  240 (272)
Q Consensus       163 V~v~~~~t~~l~--~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~  240 (272)
                      |++|||+|.+++  +++++|||||+|+|.|++++++|+|+|++|||+|++|.+   |++++++.|++|||||+++.++++
T Consensus       192 Vtv~~~~T~~l~l~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~~~~---~~~~~~g~kl~GDVdf~~v~~~a~  268 (300)
T 4a26_A          192 VTIVHSGTSTEDMIDYLRTADIVIAAMGQPGYVKGEWIKEGAAVVDVGTTPVP---DPSRKDGYRLVGDVCFEEAAARAA  268 (300)
T ss_dssp             EEEECTTSCHHHHHHHHHTCSEEEECSCCTTCBCGGGSCTTCEEEECCCEEES---CSCSTTSCEEECSBCHHHHTTTCS
T ss_pred             EEEEeCCCCCchhhhhhccCCEEEECCCCCCCCcHHhcCCCcEEEEEeccCCc---CCcccCCceeecCccHHHHHhhce
Confidence            999999999999  999999999999999999999999999999999999986   433323448999999999999999


Q ss_pred             EeccCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 024116          241 VITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  272 (272)
Q Consensus       241 ~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~~  272 (272)
                      +||||||||||||++|||+|+++++++|.+.+
T Consensus       269 ~iTPVPGGVGpmT~a~Ll~Ntv~aa~~~~~~~  300 (300)
T 4a26_A          269 WISPVPGGVGPMTIAMLLENTLEAFKAALGVS  300 (300)
T ss_dssp             EEECTTTSSSHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             EeCCCCCcChHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999864

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=100.00  E-value=3.6e-83  Score=581.53  Aligned_cols=257  Identities=50%  Similarity=0.793  Sum_probs=248.8

Q ss_pred             CCCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCH
Q 024116            3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDE   82 (272)
Q Consensus         3 ~~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~   82 (272)
                      ++.+++|+||+|+||+||+|..|+++|.|+|+++||++++++||++++|+||++.|++||+|++||||+||+|||+|+|+
T Consensus        30 ~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~  109 (286)
T 4a5o_A           30 QQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDA  109 (286)
T ss_dssp             HTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCH
T ss_pred             hcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCcCH
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE
Q 024116           83 GKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT  162 (272)
Q Consensus        83 ~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~  162 (272)
                      ++++++|+|+|||||+|++|.|+|+.|  .+.|+||||+|++++|++|+++++||+|+|||+|++||+|++++|+++||+
T Consensus       110 ~~v~~~I~p~KDVDG~~~~N~g~l~~g--~~~~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAt  187 (286)
T 4a5o_A          110 SLLLERIHPDKDVDGFHPYNIGRLAQR--MPLLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCT  187 (286)
T ss_dssp             HHHHHTSCGGGCTTCCSHHHHHHHHTT--CCSSCCHHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCE
T ss_pred             HHHHhhCCcccccccCChhhhHHHhcC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCe
Confidence            999999999999999999999999976  578999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEe
Q 024116          163 VSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVI  242 (272)
Q Consensus       163 V~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~  242 (272)
                      |++|||+|++|++++++|||||+|+|+|++++++|+|+|++|||+|++|.+         ++|++|||||+++.+++++|
T Consensus       188 Vtv~hs~T~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~~~~---------~gkl~GDVdf~~v~~~a~~i  258 (286)
T 4a5o_A          188 VTVTHRFTRDLADHVSRADLVVVAAGKPGLVKGEWIKEGAIVIDVGINRQA---------DGRLVGDVEYEVAAQRASWI  258 (286)
T ss_dssp             EEEECTTCSCHHHHHHTCSEEEECCCCTTCBCGGGSCTTCEEEECCSCSSC---------CCCSSCSBCHHHHHHHCSEE
T ss_pred             EEEEeCCCcCHHHHhccCCEEEECCCCCCCCCHHHcCCCeEEEEecccccc---------cCCcccCccHHHHHhhceEe
Confidence            999999999999999999999999999999999999999999999999986         36899999999999999999


Q ss_pred             ccCCCcccHHHHHHHHHHHHHHHHHHhC
Q 024116          243 TPVPGGVGPMTVAMLLSNTLDSAKRAYG  270 (272)
Q Consensus       243 tpvpGGvGp~T~amL~~n~v~a~~~~~~  270 (272)
                      |||||||||||++|||+|+++++++|.+
T Consensus       259 TPVPGGVGpmT~a~Ll~ntv~aa~~~~~  286 (286)
T 4a5o_A          259 TPVPGGVGPMTRACLLENTLHAAEHLHD  286 (286)
T ss_dssp             CCSSCSHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999998864

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=100.00  E-value=9.6e-83  Score=578.92  Aligned_cols=255  Identities=49%  Similarity=0.784  Sum_probs=246.5

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHH
Q 024116            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (272)
Q Consensus         5 ~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~   84 (272)
                      .|.+|+||+|+||+||+|..|+++|.|+|+++||++++++||++++|+||++.|++||+|++||||+||+|||+|+|+++
T Consensus        30 ~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~  109 (285)
T 3p2o_A           30 KGIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLPDHICKDL  109 (285)
T ss_dssp             TTCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHH
T ss_pred             cCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHH
Confidence            35599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcccccCccccccccccccCCCCCc-cccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024116           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPL-FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (272)
Q Consensus        85 i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~-~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V  163 (272)
                      ++++|+|+|||||+|++|.|+|+.|  .+. |+||||+|++++|++++++++||+++|||+|++||+|++++|+++||+|
T Consensus       110 v~~~I~p~KDVDg~~~~N~g~l~~g--~~~g~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtV  187 (285)
T 3p2o_A          110 ILESIISSKDVDGFHPINVGYLNLG--LESGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATV  187 (285)
T ss_dssp             HHHHSCGGGCTTCCSHHHHHHHHTT--CCSSCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEE
T ss_pred             HHhhCCcccccccCCHhhhhhhhcC--CCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeE
Confidence            9999999999999999999999976  455 9999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEec
Q 024116          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT  243 (272)
Q Consensus       164 ~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~t  243 (272)
                      ++|||+|+++++++++|||||+|+|+|++++++|+|+|++|||+|++|.+         ++|++|||||+++.+++++||
T Consensus       188 tv~h~~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDVgi~~~~---------~gkl~GDVdf~~v~~~a~~iT  258 (285)
T 3p2o_A          188 SVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLE---------SGKIVGDVDFEEVSKKSSYIT  258 (285)
T ss_dssp             EEECTTCSCHHHHHTTCSEEEECSSCTTCBCGGGSCTTEEEEECCCEECT---------TSCEECSBCHHHHTTTEEEEC
T ss_pred             EEEeCCchhHHHHhhcCCEEEECCCCCCcCCHHHcCCCeEEEEeccCccc---------CCCEeccccHHHHHhhheEeC
Confidence            99999999999999999999999999999999999999999999999976         368999999999999999999


Q ss_pred             cCCCcccHHHHHHHHHHHHHHHHHHhC
Q 024116          244 PVPGGVGPMTVAMLLSNTLDSAKRAYG  270 (272)
Q Consensus       244 pvpGGvGp~T~amL~~n~v~a~~~~~~  270 (272)
                      ||||||||||++|||+|+++++++|++
T Consensus       259 PVPGGVGpmT~a~Ll~ntv~a~~~~~~  285 (285)
T 3p2o_A          259 PVPGGVGPMTIAMLLENTVKSAKNRLN  285 (285)
T ss_dssp             CSSSSHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             CCCCcCcHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999998864

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=100.00  E-value=1.6e-82  Score=577.44  Aligned_cols=255  Identities=44%  Similarity=0.709  Sum_probs=247.0

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHH
Q 024116            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (272)
Q Consensus         4 ~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~   83 (272)
                      +.+++|+||+|+||+||+|..|+++|.|+|+++||++++++||++++|+||++.|++||+|++||||+||+|||+|+|++
T Consensus        30 ~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~  109 (285)
T 3l07_A           30 HTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKN  109 (285)
T ss_dssp             HHCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHH
T ss_pred             cCCCCceEEEEEECCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHH
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024116           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (272)
Q Consensus        84 ~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V  163 (272)
                      +++++|+|+|||||+|++|.|+|+.|. .++|+||||+|++++|++++++++||+++|||+|++||+|++++|+++||+|
T Consensus       110 ~v~~~I~p~KDVDG~~~~N~G~l~~g~-~~~~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtV  188 (285)
T 3l07_A          110 NVIYSIKPEKDVDGFHPTNVGRLQLRD-KKCLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATV  188 (285)
T ss_dssp             HHHHHSCGGGBTTCCSHHHHHHHHHTC-TTCCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEE
T ss_pred             HHHhhCCcccccccCChhheeehhcCC-CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeE
Confidence            999999999999999999999999772 2789999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEec
Q 024116          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT  243 (272)
Q Consensus       164 ~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~t  243 (272)
                      ++|||+|+++++++++|||||+|+|+|++++++|+|+|++|||+|++|.+          ++++|||||+++.+++++||
T Consensus       189 tv~hs~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~~~~----------g~l~GDVdf~~v~~~a~~iT  258 (285)
T 3l07_A          189 TTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVD----------GKIVGDVDFAAVKDKVAAIT  258 (285)
T ss_dssp             EEECTTCSSHHHHHTTCSEEEECCCCTTCBCGGGSCTTCEEEECCCEEET----------TEEECSBCHHHHTTTCSEEC
T ss_pred             EEEeCCchhHHHhcccCCEEEECCCCCCCCCHHHcCCCcEEEEecccCcC----------CceecCccHHHHHhhheEeC
Confidence            99999999999999999999999999999999999999999999999976          59999999999999999999


Q ss_pred             cCCCcccHHHHHHHHHHHHHHHHHHh
Q 024116          244 PVPGGVGPMTVAMLLSNTLDSAKRAY  269 (272)
Q Consensus       244 pvpGGvGp~T~amL~~n~v~a~~~~~  269 (272)
                      ||||||||||++|||+|+++++++|.
T Consensus       259 PVPGGVGpmT~a~Ll~ntv~a~~~~~  284 (285)
T 3l07_A          259 PVPGGVGPMTITELLYNTFQCAQELN  284 (285)
T ss_dssp             CSSSSSHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCcChHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999874

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=100.00  E-value=2.2e-82  Score=576.82  Aligned_cols=255  Identities=47%  Similarity=0.773  Sum_probs=247.4

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHH
Q 024116            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (272)
Q Consensus         5 ~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~   84 (272)
                      .+++|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++.|++||+|++||||+||+|||+|+|+++
T Consensus        30 ~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~id~~~  109 (288)
T 1b0a_A           30 GLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVK  109 (288)
T ss_dssp             TCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEECCEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHH
T ss_pred             CCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHH
Confidence            34779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE
Q 024116           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS  164 (272)
Q Consensus        85 i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~  164 (272)
                      ++++|+|+|||||||+.|.|+|+.|  .++|+||||+|++++|++|+++++||+|+|||+|++||+|++++|.++||+|+
T Consensus       110 i~~~I~p~KDVDG~~p~n~g~l~~g--~~~~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVt  187 (288)
T 1b0a_A          110 VLERIHPDKDVDGFHPYNVGRLCQR--APRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTT  187 (288)
T ss_dssp             HHTTSCTTTCTTCCSHHHHHHHHTT--CCSSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEE
T ss_pred             HHhccCCccCcccCCccchhHHhCC--CCCCCCCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEE
Confidence            9999999999999999999999977  57899999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEecc
Q 024116          165 IVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITP  244 (272)
Q Consensus       165 v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tp  244 (272)
                      +||++|+++.+++++|||||+|+|+|++++++|+|+|++|||+|+++.+         +++++|||||+++.+++++|||
T Consensus       188 v~hs~t~~L~~~~~~ADIVI~Avg~p~lI~~~~vk~GavVIDVgi~r~~---------~g~l~GDVdf~~v~~~a~~iTP  258 (288)
T 1b0a_A          188 VTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLE---------NGKVVGDVVFEDAAKRASYITP  258 (288)
T ss_dssp             EECSSCSCHHHHHHHCSEEEECSCCTTCBCTTTSCTTCEEEECCCEECT---------TSCEECSBCHHHHHHHCSEECC
T ss_pred             EEeCCchhHHHHhccCCEEEECCCCcCcCCHHHcCCCcEEEEccCCccC---------CCCccCCcCHHHHhhhccEecC
Confidence            9999999999999999999999999999999999999999999999875         2689999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHHHHHHhC
Q 024116          245 VPGGVGPMTVAMLLSNTLDSAKRAYG  270 (272)
Q Consensus       245 vpGGvGp~T~amL~~n~v~a~~~~~~  270 (272)
                      |||||||||++|||+|+++++++|+.
T Consensus       259 VPGGVGpmT~a~Ll~Ntv~aa~~~~~  284 (288)
T 1b0a_A          259 VPGGVGPMTVATLIENTLQACVEYHD  284 (288)
T ss_dssp             SSSSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999998874

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=100.00  E-value=5.8e-82  Score=577.23  Aligned_cols=262  Identities=46%  Similarity=0.786  Sum_probs=245.6

Q ss_pred             CCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCC--CCHH
Q 024116            6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQH--LDEG   83 (272)
Q Consensus         6 ~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~--~~~~   83 (272)
                      +++|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++.|++||+|++||||+||+|||+|  +|+.
T Consensus        33 ~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~~~id~~  112 (301)
T 1a4i_A           33 GFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTE  112 (301)
T ss_dssp             TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCHH
T ss_pred             CCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeccCCCCCccCHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             HHHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024116           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (272)
Q Consensus        84 ~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V  163 (272)
                      +++++|+|+|||||||+.|.|+|+.|...++|+||||+|++++|++++++++||+|+|||+|++||+|++++|.++||+|
T Consensus       113 ~i~~~I~p~KDVDG~hp~N~G~l~~g~~~~~~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtV  192 (301)
T 1a4i_A          113 EVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATV  192 (301)
T ss_dssp             HHHHTSCGGGBTTCCSHHHHHHHHTTCCSSCCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEE
T ss_pred             HHHhccCCCCCccCCChhhHHHHhcCCCCCCccCchHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeE
Confidence            99999999999999999999999987434789999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEec
Q 024116          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT  243 (272)
Q Consensus       164 ~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~t  243 (272)
                      |+||++++++.+++++|||||+|+|+|++|+++|+|+|++|||+|+++.+   |+++.++++++|||||+++.+++++||
T Consensus       193 tv~hs~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDVgi~~~~---d~~~~~g~klvGDVdf~~v~~~a~~iT  269 (301)
T 1a4i_A          193 TTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVP---DDKKPNGRKVVGDVAYDEAKERASFIT  269 (301)
T ss_dssp             EEECTTCSSHHHHHTTCSEEEECCCCTTCBCGGGSCTTCEEEECCCBC-------------CCBCSBCHHHHTTTCSEEC
T ss_pred             EEEECCcccHHHHhccCCEEEECCCCcccCCHHHcCCCcEEEEccCCCcc---cccccCCCeeeccccHHHhhhhceEeC
Confidence            99999999999999999999999999999999999999999999999975   332222348999999999999999999


Q ss_pred             cCCCcccHHHHHHHHHHHHHHHHHHhC
Q 024116          244 PVPGGVGPMTVAMLLSNTLDSAKRAYG  270 (272)
Q Consensus       244 pvpGGvGp~T~amL~~n~v~a~~~~~~  270 (272)
                      ||||||||||++|||+|+++++++|+.
T Consensus       270 PVPGGVGpmTiamLl~Ntv~aa~~~~~  296 (301)
T 1a4i_A          270 PVPGGVGPMTVAMLMQSTVESAKRFLE  296 (301)
T ss_dssp             CSSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999998875

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=100.00  E-value=3.6e-81  Score=565.88  Aligned_cols=250  Identities=32%  Similarity=0.576  Sum_probs=242.8

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHH
Q 024116            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (272)
Q Consensus         5 ~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~   84 (272)
                      .|++|+||+|+||+||+|..|+++|.|+|+++|| ++.++||++++|+||++.|++||+|++||||+||+|||+|+|+++
T Consensus        24 l~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi-~~~~~lp~~~s~~ell~~I~~lN~D~~v~GIlvqlPLP~~id~~~  102 (276)
T 3ngx_A           24 SGLEPSLKLIQIGDNEAASIYARAKIRRGKKIGI-AVDLEKYDDISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYE  102 (276)
T ss_dssp             TTCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTC-EEEEEEESSCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTCCHHH
T ss_pred             hCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHCCe-EEEEECCCCCCHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCHHH
Confidence            3789999999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE
Q 024116           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS  164 (272)
Q Consensus        85 i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~  164 (272)
                      ++++|+|+|||||||++|.|+|+.|  .++|+||||+|++++|++|+  ++||+++|||+|++||+|++++|+++||+|+
T Consensus       103 v~~~I~p~KDVDG~~p~n~G~l~~g--~~~~~PcTp~gv~~lL~~~~--l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVt  178 (276)
T 3ngx_A          103 IVRNIPYYKDVDALSPYNQGLIALN--REFLVPATPRAVIDIMDYYG--YHENTVTIVNRSPVVGRPLSMMLLNRNYTVS  178 (276)
T ss_dssp             HHTTSCGGGBTTCCSHHHHHHHHTT--CCSSCCHHHHHHHHHHHHHT--CCSCEEEEECCCTTTHHHHHHHHHHTTCEEE
T ss_pred             HHhhCCCCCcccCCCccchhhhhcC--CCCCCCCcHHHHHHHHHHhC--cCCCEEEEEcCChHHHHHHHHHHHHCCCeEE
Confidence            9999999999999999999999987  67899999999999999998  9999999999999999999999999999999


Q ss_pred             EEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEecc
Q 024116          165 IVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITP  244 (272)
Q Consensus       165 v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tp  244 (272)
                      +|||+++++++++++|||||+|+|+|++++++|+|+|++|||+|++| +         ++|++|||||+++.+++++|||
T Consensus       179 v~~~~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~~-~---------~gkl~GDVdf~~v~~~a~~iTP  248 (276)
T 3ngx_A          179 VCHSKTKDIGSMTRSSKIVVVAVGRPGFLNREMVTPGSVVIDVGINY-V---------NDKVVGDANFEDLSEYVEAITP  248 (276)
T ss_dssp             EECTTCSCHHHHHHHSSEEEECSSCTTCBCGGGCCTTCEEEECCCEE-E---------TTEEECSBCHHHHHTTSSEECC
T ss_pred             EEeCCcccHHHhhccCCEEEECCCCCccccHhhccCCcEEEEeccCc-c---------CCceeccccHHHHhhhceEeCC
Confidence            99999999999999999999999999999999999999999999999 4         2699999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHHHHHHh
Q 024116          245 VPGGVGPMTVAMLLSNTLDSAKRAY  269 (272)
Q Consensus       245 vpGGvGp~T~amL~~n~v~a~~~~~  269 (272)
                      |||||||+|++|||+|++++++++.
T Consensus       249 VPGGVGpmT~a~Ll~n~v~a~~~~~  273 (276)
T 3ngx_A          249 VPGGVGPITATNILENVVKAAEFQK  273 (276)
T ss_dssp             TTTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcChHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998654

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=100.00  E-value=6.5e-80  Score=558.91  Aligned_cols=249  Identities=44%  Similarity=0.763  Sum_probs=242.4

Q ss_pred             CCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHH
Q 024116            6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKI   85 (272)
Q Consensus         6 ~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i   85 (272)
                      |++|+||+|+||+||+|..|+++|.|+|+++||+++.++||++++|+||++.|++||+|++||||+||+|||+|+|++++
T Consensus        30 g~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~i~~lN~D~~v~GIlvqlPlP~~id~~~i  109 (281)
T 2c2x_A           30 GRTPGLGTILVGDDPGSQAYVRGKHADCAKVGITSIRRDLPADISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAA  109 (281)
T ss_dssp             TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHH
T ss_pred             CCCceEEEEEeCCChhhHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCCHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhC--CCEE
Q 024116           86 LDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH--HATV  163 (272)
Q Consensus        86 ~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~--ga~V  163 (272)
                      +++|+|+|||||||+.|.|+|+.|  .++|+||||+|++++|++++++++||+|+|||+|++||+|++++|+++  |++|
T Consensus       110 ~~~I~p~KDVDG~~p~n~g~l~~g--~~~~~PcTp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atV  187 (281)
T 2c2x_A          110 LERVDPAKDADGLHPTNLGRLVLG--TPAPLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATV  187 (281)
T ss_dssp             HHHSCGGGBTTSCCHHHHHHHHHT--CCCCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEE
T ss_pred             HhhcCccCCccCCChhhHHHHhCC--CCCCCCChHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEE
Confidence            999999999999999999999977  578999999999999999999999999999999999999999999999  8999


Q ss_pred             EEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEec
Q 024116          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT  243 (272)
Q Consensus       164 ~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~t  243 (272)
                      ++|||+++++.+++++|||||+|+|+|++++++|+|+|++|||+|+++.+         ++ ++|||| +++.+++++||
T Consensus       188 tv~h~~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDVgi~r~~---------~g-lvGDVd-~~v~~~a~~iT  256 (281)
T 2c2x_A          188 TLCHTGTRDLPALTRQADIVVAAVGVAHLLTADMVRPGAAVIDVGVSRTD---------DG-LVGDVH-PDVWELAGHVS  256 (281)
T ss_dssp             EEECTTCSCHHHHHTTCSEEEECSCCTTCBCGGGSCTTCEEEECCEEEET---------TE-EEESBC-GGGGGTCSEEE
T ss_pred             EEEECchhHHHHHHhhCCEEEECCCCCcccCHHHcCCCcEEEEccCCCCC---------CC-ccCccc-cchhhheeeec
Confidence            99999999999999999999999999999999999999999999999975         25 999999 89999999999


Q ss_pred             cCCCcccHHHHHHHHHHHHHHHHH
Q 024116          244 PVPGGVGPMTVAMLLSNTLDSAKR  267 (272)
Q Consensus       244 pvpGGvGp~T~amL~~n~v~a~~~  267 (272)
                      ||||||||||++|||+|+++++++
T Consensus       257 PVPGGVGpmT~a~Ll~ntv~aa~~  280 (281)
T 2c2x_A          257 PNPGGVGPLTRAFLLTNVVELAER  280 (281)
T ss_dssp             CSSSSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999985

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=100.00  E-value=6.8e-65  Score=469.77  Aligned_cols=238  Identities=29%  Similarity=0.421  Sum_probs=221.0

Q ss_pred             CCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHH
Q 024116            7 KVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKIL   86 (272)
Q Consensus         7 ~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~   86 (272)
                      ++|+||+|+||+||+|..|+++|.|+|+++||+++.++||++   +||++.|++||+|++||||+||+|||+|+++.+++
T Consensus        35 ~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~l~~~---~~l~~~i~~lN~d~~v~GIlvqlPlp~~~~~~~i~  111 (320)
T 1edz_A           35 QGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDLRVIEDK---DFLEEAIIQANGDDSVNGIMVYFPVFGNAQDQYLQ  111 (320)
T ss_dssp             CCCEEEEEECCCCHHHHHHHHHHHHHHHHHTCEEEEEECSSG---GGHHHHHHHHHHCTTCCEEEECSCSSSSHHHHHHT
T ss_pred             CCCeEEEEEECCchhHHHHHHHHHHHHHHcCCEEEEEECCCh---HHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHH
Confidence            679999999999999999999999999999999999999974   67999999999999999999999999999999999


Q ss_pred             hcCCcccccCccccccccccccCCC-------CCccccCCHHHHHHHHHH---------hCCCCccceEEEEcCCcccHH
Q 024116           87 DAVSLEKDVDGFHPLNIGNLAMRGR-------EPLFIPCTPKGCIELLIR---------SGVEIMGKNAVVIGRSNIVGL  150 (272)
Q Consensus        87 ~~i~p~KDvdg~~~~n~g~l~~~~~-------~~~~~p~Ta~g~~~~l~~---------~~~~l~gk~v~ViG~g~~vG~  150 (272)
                      ++|+|+|||||||+.|.|+|+.|..       .++|+||||+|++++|++         ++++++||+|+|||+|++||+
T Consensus       112 ~~I~p~KDVDG~~~~n~g~l~~~~~~l~~~~~~~~~~PcTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~  191 (320)
T 1edz_A          112 QVVCKEKDVEGLNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGR  191 (320)
T ss_dssp             TTSCTTTBTTCCSHHHHHHHHTTCCBSSSSSCSBCCCCHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHH
T ss_pred             hccCcccccCcCChhhhHHHhcCCccccccccCCCcCCCcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHH
Confidence            9999999999999999999987621       258999999999999999         789999999999999999999


Q ss_pred             HHHHHHHhCCCEEEEEeCC-----------------------C--CCHhhhcCCCcEEEEecCCCcc-ccCCCcCCCcEE
Q 024116          151 PTSLLLQRHHATVSIVHAL-----------------------T--KNPEQITSEADIVIAAAGVANL-VRGSWLKPGAVV  204 (272)
Q Consensus       151 ~la~~L~~~ga~V~v~~~~-----------------------t--~~l~~~l~~ADIVIsa~g~p~~-i~~~~vk~g~vv  204 (272)
                      +++++|.++|++|++|+|+                       +  .++++++++|||||+|||+|++ |+++|+++|++|
T Consensus       192 ~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsAtg~p~~vI~~e~vk~GavV  271 (320)
T 1edz_A          192 PLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEGAVC  271 (320)
T ss_dssp             HHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCCCTTCCBCTTTSCTTEEE
T ss_pred             HHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEECCCCCcceeCHHHcCCCeEE
Confidence            9999999999999999664                       2  5789999999999999999998 999999999999


Q ss_pred             EEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEeccCCCcccHHHHHHHHHHHHHHHHHH
Q 024116          205 LDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA  268 (272)
Q Consensus       205 iDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~  268 (272)
                      ||+|+++                 |+| +++.+++++||||   |||+|++|||+|+++++++.
T Consensus       272 IDVgi~r-----------------D~d-~~v~~~a~~itPv---VGpmT~a~Ll~n~~~a~~~~  314 (320)
T 1edz_A          272 INFACTK-----------------NFS-DDVKEKASLYVPM---TGKVTIAMLLRNMLRLVRNV  314 (320)
T ss_dssp             EECSSSC-----------------CBC-GGGGTTEEEEESC---CHHHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCCc-----------------ccc-hhHHhhCCeeCCC---ccHHHHHHHHHHHHHHHHHh
Confidence            9999874                 222 4567889999998   99999999999999999854

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=99.97  E-value=4.1e-32  Score=244.99  Aligned_cols=220  Identities=15%  Similarity=0.149  Sum_probs=180.7

Q ss_pred             eCCCcchHHHHH-HHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-cc
Q 024116           16 VGERRDSQTYVR-NKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EK   93 (272)
Q Consensus        16 vg~~~~s~~Y~~-~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~K   93 (272)
                      +| +|-+++|-. .|+++|+++|+++.|..|+.  ++++|.+.|+.++ +++++|++||+|||++  ..++++.++| .|
T Consensus         7 iG-~pi~hS~Sp~~h~~~~~~~g~~~~y~~~~~--~~~~l~~~i~~l~-~~~~~G~nVT~P~K~~--~~~~ld~~~~~A~   80 (271)
T 1nyt_A            7 FG-NPIAHSKSPFIHQQFAQQLNIEHPYGRVLA--PINDFINTLNAFF-SAGGKGANVTVPFKEE--AFARADELTERAA   80 (271)
T ss_dssp             EE-SSCTTCSHHHHHHHHHHHHTCCCCEEEEEC--CTTCHHHHHHHHH-HTTCCEEEECTTCHHH--HHHHCSEECHHHH
T ss_pred             EC-CCcccccCHHHHHHHHHHCCCCcEEEEEEc--CHHHHHHHHHHHH-hCCCCeEEEccCCHHH--HHHHHhhcCHHHH
Confidence            45 677777766 89999999999999999964  6789999999999 5799999999999984  4778888999 59


Q ss_pred             ccCccccc---cccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116           94 DVDGFHPL---NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus        94 Dvdg~~~~---n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++++++.+   +.|++. |++      +++.|+++.|++++++++||+++|+|+|++ |++++..|++.|++|++++|+.
T Consensus        81 ~igavNti~~~~~g~l~-G~n------tD~~G~~~~L~~~~~~l~~k~vlViGaGg~-g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A           81 LAGAVNTLMRLEDGRLL-GDN------TDGVGLLSDLERLSFIRPGLRILLIGAGGA-SRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             HHTCCSEEEECTTSCEE-EEC------CHHHHHHHHHHHHTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSH
T ss_pred             HhCCceEEEEcCCCeEE-EeC------CCHHHHHHHHHhcCcCcCCCEEEEECCcHH-HHHHHHHHHHcCCEEEEEECCH
Confidence            99999765   467775 654      556999999999999999999999999985 9999999999999999999874


Q ss_pred             CC---Hhh--------------hc--CCCcEEEEecCCCcc-----ccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceE
Q 024116          171 KN---PEQ--------------IT--SEADIVIAAAGVANL-----VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRL  226 (272)
Q Consensus       171 ~~---l~~--------------~l--~~ADIVIsa~g~p~~-----i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~  226 (272)
                      +.   +.+              .+  .++|+||+++|.+..     +++++++++.+|+|+.|+|.+          +.+
T Consensus       153 ~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~~~~~~i~~~~l~~~~~v~D~~y~p~~----------t~~  222 (271)
T 1nyt_A          153 SRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGK----------TPF  222 (271)
T ss_dssp             HHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGTCCCCCCGGGCCTTCEEEESCCCSSC----------CHH
T ss_pred             HHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCCCCCCCCCHHHcCCCCEEEEeccCCcC----------CHH
Confidence            22   111              12  379999999996543     677888999999999999854          444


Q ss_pred             ecccchhhhhhhceEeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          227 MGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       227 ~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                      .     +. ++++++ +|+.+|.+     ||++|.+++|++|+|.
T Consensus       223 ~-----~~-a~~~G~-~~~~~G~~-----mLv~Q~~~af~~w~g~  255 (271)
T 1nyt_A          223 L-----AW-CEQRGS-KRNADGLG-----MLVAQAAHAFLLWHGV  255 (271)
T ss_dssp             H-----HH-HHHTTC-CEEECTHH-----HHHHHHHHHHHHHHSS
T ss_pred             H-----HH-HHHcCC-CeecCCHH-----HHHHHHHHHHHHHhCC
Confidence            3     33 666776 33667766     9999999999999985

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=99.97  E-value=7.3e-31  Score=239.07  Aligned_cols=217  Identities=18%  Similarity=0.213  Sum_probs=179.8

Q ss_pred             eCCCcchHHHH-HHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-cc
Q 024116           16 VGERRDSQTYV-RNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EK   93 (272)
Q Consensus        16 vg~~~~s~~Y~-~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~K   93 (272)
                      +| +|-++++- ..++++|+++|+++.|..|+.  ++++|.+.++.++. +++.|++||+|+|.  +..++++.++| ++
T Consensus        11 iG-~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v--~~~~l~~~v~~l~~-~~~~G~nVTiP~K~--~v~~~ld~ls~~A~   84 (282)
T 3fbt_A           11 IG-EKLGHSHSSYIHKLIFEKVGIKGIYNLFEV--PKEKLKESVDTFKI-IKCGGLNVTIPYKV--EVMKELYEISEKAR   84 (282)
T ss_dssp             EE-SSCCCCHHHHHHHHHHHHHTCCEEEEEEEC--CGGGHHHHHHHHHH-TTCCEEEECTTCTT--GGGGGCSEECHHHH
T ss_pred             EC-CCccccchHHHHHHHHHHcCCCcEEEEEEC--CHHHHHHHHHHHhc-CCCCEEEEcCCCHH--HHHHHHHhcCHHHH
Confidence            35 45555554 468899999999999999955  67899999999987 68999999999997  66889999999 79


Q ss_pred             ccCccccc-c-ccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC
Q 024116           94 DVDGFHPL-N-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT  170 (272)
Q Consensus        94 Dvdg~~~~-n-~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t  170 (272)
                      .+++++.+ + .|++. |+|+|+      .|+++.|++++++++||+++|+|+|++ |++++..|.+.|+ +|++++|+.
T Consensus        85 ~iGAVNTv~~~~g~l~-G~NTD~------~G~~~~L~~~~~~~~~k~vlvlGaGGa-araia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A           85 KIGAVNTLKFSREGIS-GFNTDY------IGFGKMLSKFRVEIKNNICVVLGSGGA-ARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             HHTCCCEEEECSSCEE-EECCHH------HHHHHHHHHTTCCCTTSEEEEECSSTT-HHHHHHHHHHTTCSEEEEEESCH
T ss_pred             HcCCcceEEeeCCEEE-eeCCcH------HHHHHHHHHcCCCccCCEEEEECCcHH-HHHHHHHHHHcCCCEEEEEeCCH
Confidence            99998654 3 36665 666665      999999999999999999999999997 9999999999998 999999975


Q ss_pred             CCH---------------hhhcCCCcEEEEecCC---Cc----cccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEec
Q 024116          171 KNP---------------EQITSEADIVIAAAGV---AN----LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMG  228 (272)
Q Consensus       171 ~~l---------------~~~l~~ADIVIsa~g~---p~----~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~G  228 (272)
                      +..               .+ + ++|+||++|+.   |+    .++.++++++.+|+|+.|+|.+          |.|+ 
T Consensus       157 ~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~~pi~~~~l~~~~~v~DlvY~P~~----------T~ll-  223 (282)
T 3fbt_A          157 EKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNPVE----------TLFL-  223 (282)
T ss_dssp             HHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTCCSSCHHHHTTCSEEEESCCSSSS----------CHHH-
T ss_pred             HHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCccCCCCHHHcCCCCEEEEEeeCCCC----------CHHH-
Confidence            221               22 4 89999999963   43    3677889999999999999976          6777 


Q ss_pred             ccchhhhhhhceEeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          229 DVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       229 dvd~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                          +. ++..++  ++-+|.+     ||++|++++|+.|+|.
T Consensus       224 ----~~-A~~~G~--~~~~Gl~-----MLv~Qa~~~f~lwtg~  254 (282)
T 3fbt_A          224 ----KY-ARESGV--KAVNGLY-----MLVSQAAASEEIWNDI  254 (282)
T ss_dssp             ----HH-HHHTTC--EEECSHH-----HHHHHHHHHHHHHHTC
T ss_pred             ----HH-HHHCcC--eEeCcHH-----HHHHHHHHHHHHHcCC
Confidence                55 666777  4556777     9999999999999986

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=99.96  E-value=1.3e-29  Score=234.17  Aligned_cols=221  Identities=20%  Similarity=0.253  Sum_probs=180.5

Q ss_pred             EeCCCcchHHH-HHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-c
Q 024116           15 LVGERRDSQTY-VRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E   92 (272)
Q Consensus        15 ~vg~~~~s~~Y-~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~   92 (272)
                      .+| +|-++++ =..++.+|+++|+++.|..|+.  ++++|.+.++.++. +++.|++||+|+|.  +..++++.++| +
T Consensus        42 viG-~Pi~hS~SP~ihn~~f~~~Gl~~~Y~~~~v--~~~~l~~~~~~l~~-~~~~G~nVTiP~K~--~v~~~lD~ls~~A  115 (315)
T 3tnl_A           42 LIA-TPIRHSLSPTMHNEAFAKLGLDYVYLAFEV--GDKELKDVVQGFRA-MNLRGWNVSMPNKT--NIHKYLDKLSPAA  115 (315)
T ss_dssp             EEE-SSCTTCSHHHHHHHHHHHHTCCEEEEEEEC--CHHHHHHHHHHHHH-TTCCEEEECTTSTT--TGGGGCSEECHHH
T ss_pred             EEC-CCccccccHHHHHHHHHHcCCCcEEEEEec--CHHHHHHHHHHHhc-CCCCEEEEcCCChH--HHHHHHHhcCHHH
Confidence            345 4444433 3378889999999999999954  78899999999987 68999999999997  66889999999 7


Q ss_pred             cccCcccc-cc-ccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024116           93 KDVDGFHP-LN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (272)
Q Consensus        93 KDvdg~~~-~n-~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~  169 (272)
                      +.+++++. ++ .|++. |+|+|+      .|+++.|++.+++++||+++|+|+|++ |++++..|++.|+ +|++++|+
T Consensus       116 ~~iGAVNTi~~~~g~l~-G~NTD~------~Gf~~~L~~~~~~l~gk~~lVlGaGG~-g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          116 ELVGAVNTVVNDDGVLT-GHITDG------TGYMRALKEAGHDIIGKKMTICGAGGA-ATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             HHHTCCSEEEEETTEEE-EECCHH------HHHHHHHHHTTCCCTTSEEEEECCSHH-HHHHHHHHHHTTCSEEEEEECS
T ss_pred             HHhCccceEEecCCEEE-EeCCCH------HHHHHHHHHcCCCccCCEEEEECCChH-HHHHHHHHHHCCCCEEEEEECC
Confidence            99999854 34 36665 666665      999999999999999999999999997 9999999999998 89999998


Q ss_pred             CC-----------------------------CHhhhcCCCcEEEEecCC---Cc----cc-cCCCcCCCcEEEEeeeCCC
Q 024116          170 TK-----------------------------NPEQITSEADIVIAAAGV---AN----LV-RGSWLKPGAVVLDVGTCPV  212 (272)
Q Consensus       170 t~-----------------------------~l~~~l~~ADIVIsa~g~---p~----~i-~~~~vk~g~vviDig~~~~  212 (272)
                      .+                             ++.+.++++|+||++|+.   |+    .+ +.++++++.+|+|+.|+|.
T Consensus       188 ~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINaTp~Gm~~~~~~~p~~~~~~l~~~~~V~DlvY~P~  267 (315)
T 3tnl_A          188 DDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPT  267 (315)
T ss_dssp             STTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECSSTTSTTSTTCCSCCCGGGCCTTCEEEESCCSSS
T ss_pred             CchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEECccCCCCCCCCCCCCCcHHHcCCCCEEEEeccCCC
Confidence            21                             123446689999999973   33    25 6778999999999999997


Q ss_pred             CCCCCCCCCCCceEecccchhhhhhhceEeccCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 024116          213 DVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  272 (272)
Q Consensus       213 ~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~~  272 (272)
                      +          |+|+     +. ++..++  ++-+|.+     ||++|++++||.|+|..
T Consensus       268 ~----------T~ll-----~~-A~~~G~--~~~~Gl~-----MLv~Qa~~af~lwtG~~  304 (315)
T 3tnl_A          268 K----------TRLL-----EI-AEEQGC--QTLNGLG-----MMLWQGAKAFEIWTHKE  304 (315)
T ss_dssp             S----------CHHH-----HH-HHHTTC--EEECSHH-----HHHHHHHHHHHHHHSSC
T ss_pred             C----------CHHH-----HH-HHHCCC--eEeCcHH-----HHHHHHHHHHHHHhCCC
Confidence            6          6777     55 666777  4566777     99999999999999863

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=99.96  E-value=1.4e-30  Score=235.33  Aligned_cols=211  Identities=15%  Similarity=0.123  Sum_probs=171.6

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-ccccCccccc---c
Q 024116           27 RNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EKDVDGFHPL---N  102 (272)
Q Consensus        27 ~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~KDvdg~~~~---n  102 (272)
                      ..|+++|+++|+++.|..|+.  ++++|.+.++.++. ++++|++||+|||+  ...++++.++| .|++++++.+   +
T Consensus        18 ~~hn~~~~~~gl~~~y~~~~~--~~~~l~~~i~~~~~-~~~~G~nVT~P~K~--~v~~~ld~~~~~A~~igavNti~~~~   92 (272)
T 1p77_A           18 LIQNKLAAQTHQTMEYIAKLG--DLDAFEQQLLAFFE-EGAKGCNITSPFKE--RAYQLADEYSQRAKLAEACNTLKKLD   92 (272)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEC--CTTTHHHHHHHHHH-TTCCEEEECTTCHH--HHHHHCSEECHHHHHHTCCSEEEECT
T ss_pred             HHHHHHHHHCCcCeEEEEEEc--CHHHHHHHHHHHHh-CCCCEEEECcCCHH--HHHHHHhhcCHHHHHhCCceEEEEcc
Confidence            379999999999999999954  67899999999994 78999999999998  44889999999 6999999765   5


Q ss_pred             ccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC---Hh-----
Q 024116          103 IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---PE-----  174 (272)
Q Consensus       103 ~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~---l~-----  174 (272)
                      .|++. |+|++      +.|+++.|++++++++||+++|+|+|++ |++++..|++.|++|++++|+.+.   +.     
T Consensus        93 ~g~l~-g~NTD------~~G~~~~L~~~~~~~~~~~vlvlGaGg~-g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~  164 (272)
T 1p77_A           93 DGKLY-ADNTD------GIGLVTDLQRLNWLRPNQHVLILGAGGA-TKGVLLPLLQAQQNIVLANRTFSKTKELAERFQP  164 (272)
T ss_dssp             TSCEE-EECCH------HHHHHHHHHHTTCCCTTCEEEEECCSHH-HHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGG
T ss_pred             CCEEE-EecCC------HHHHHHHHHHhCCCcCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccc
Confidence            67776 66555      4999999999999999999999999996 999999999999999999998521   11     


Q ss_pred             ---------hhc-C-CCcEEEEecCCCcc-----ccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhh
Q 024116          175 ---------QIT-S-EADIVIAAAGVANL-----VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRL  238 (272)
Q Consensus       175 ---------~~l-~-~ADIVIsa~g~p~~-----i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~  238 (272)
                               +.+ + ++|+||++||.+..     ++.++++++.+|+|+.|+|.+         .+++.     +. +++
T Consensus       165 ~~~~~~~~~~~~~~~~~DivIn~t~~~~~~~~~~i~~~~l~~~~~v~D~~y~p~~---------~t~ll-----~~-a~~  229 (272)
T 1p77_A          165 YGNIQAVSMDSIPLQTYDLVINATSAGLSGGTASVDAEILKLGSAFYDMQYAKGT---------DTPFI-----AL-CKS  229 (272)
T ss_dssp             GSCEEEEEGGGCCCSCCSEEEECCCC-------CCCHHHHHHCSCEEESCCCTTS---------CCHHH-----HH-HHH
T ss_pred             cCCeEEeeHHHhccCCCCEEEECCCCCCCCCCCCCCHHHcCCCCEEEEeeCCCCc---------CCHHH-----HH-HHH
Confidence                     123 3 89999999996442     555678889999999998753         13333     33 666


Q ss_pred             ceEeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          239 ASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       239 ~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                      +++.|+++ |.+     ||++|.+++|+.|+|.
T Consensus       230 ~G~~~~v~-G~~-----mLv~Qa~~af~~w~g~  256 (272)
T 1p77_A          230 LGLTNVSD-GFG-----MLVAQAAHSFHLWRGV  256 (272)
T ss_dssp             TTCCCEEC-SHH-----HHHHHHHHHHHHHHSC
T ss_pred             cCCCEeeC-CHH-----HHHHHHHHHHHHHhCC
Confidence            77754576 454     9999999999999985

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=99.96  E-value=3e-30  Score=234.42  Aligned_cols=219  Identities=17%  Similarity=0.227  Sum_probs=179.1

Q ss_pred             EeCCCcchHHHHHHH-HHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-c
Q 024116           15 LVGERRDSQTYVRNK-IKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E   92 (272)
Q Consensus        15 ~vg~~~~s~~Y~~~~-~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~   92 (272)
                      .+| +|-+++|-... +++|+++|+++.|..|+  +++++|.+.|+.++++ +++|++||+|||+++  ..+++.+++ .
T Consensus        16 viG-~pi~hS~Sp~~h~~~~~~~gi~~~y~~~~--~~~~~l~~~i~~l~~~-~~~G~nVtiP~k~~i--~~~~d~~~~~a   89 (287)
T 1nvt_A           16 LIG-HPVEHSFSPIMHNAAFKDKGLNYVYVAFD--VLPENLKYVIDGAKAL-GIVGFNVTIPHKIEI--MKYLDEIDKDA   89 (287)
T ss_dssp             EEE-SSCTTCSHHHHHHHHHHHTTCCEEEEEEE--CCGGGGGGHHHHHHHH-TCCEEEECTTSTTGG--GGGCSEECHHH
T ss_pred             EEC-CCcccccCHHHHHHHHHHcCCCcEEEEEE--cCHHHHHHHHHHHHhC-CCCEEEEccCCHHHH--HHHHHhcCHHH
Confidence            446 78888887655 99999999999999994  4789999999999975 899999999999855  677888889 7


Q ss_pred             cccCccccc--cccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116           93 KDVDGFHPL--NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus        93 KDvdg~~~~--n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++++++.+  +.|++. |+      ++|+.|+++.|++++++++||+++|+|+|++ |++++..|+++| +|++++|+.
T Consensus        90 ~~igavnt~~~~~g~l~-g~------nTd~~G~~~~L~~~~~~l~~k~vlV~GaGgi-G~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A           90 QLIGAVNTIKIEDGKAI-GY------NTDGIGARMALEEEIGRVKDKNIVIYGAGGA-ARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             HHHTCCCEEEEETTEEE-EE------CCHHHHHHHHHHHHHCCCCSCEEEEECCSHH-HHHHHHHHTSSS-EEEEECSSH
T ss_pred             HHhCceeeEEeeCCEEE-Ee------cCCHHHHHHHHHHhCCCcCCCEEEEECchHH-HHHHHHHHHHCC-CEEEEECCH
Confidence            999999655  366665 54      3467999999999999999999999999975 999999999999 999999875


Q ss_pred             CC---H---------------------hhhcCCCcEEEEecCCCc-------cc-cCCCcCCCcEEEEeeeCCCCCCCCC
Q 024116          171 KN---P---------------------EQITSEADIVIAAAGVAN-------LV-RGSWLKPGAVVLDVGTCPVDVSVDP  218 (272)
Q Consensus       171 ~~---l---------------------~~~l~~ADIVIsa~g~p~-------~i-~~~~vk~g~vviDig~~~~~~~~~~  218 (272)
                      +.   +                     .+.+.++|+||+++|...       .+ +.++++++.+|+|++|+|.+     
T Consensus       161 ~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~~~~~~~~~~~~~~~~~l~~~~~v~Dv~y~p~~-----  235 (287)
T 1nvt_A          161 EKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLE-----  235 (287)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSS-----
T ss_pred             HHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCCCCCCCCCCCCCCCHHHcCCCCEEEEeeeCCcc-----
Confidence            21   1                     234567999999998533       24 67889999999999998865     


Q ss_pred             CCCCCceEecccchhhhhhhceEeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          219 SCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       219 ~~~~~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                           +++.     +. ++++++.  +.+|++     ||++|++++|+.|+|.
T Consensus       236 -----t~ll-----~~-a~~~G~~--~~~Gl~-----mL~~Qa~~af~~w~g~  270 (287)
T 1nvt_A          236 -----TVLL-----KE-AKKVNAK--TINGLG-----MLIYQGAVAFKIWTGV  270 (287)
T ss_dssp             -----CHHH-----HH-HHTTTCE--EECTHH-----HHHHHHHHHHHHHHSS
T ss_pred             -----CHHH-----HH-HHHCCCE--EeCcHH-----HHHHHHHHHHHHHhCC
Confidence                 5555     33 5556663  455666     9999999999999985

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=99.96  E-value=1.3e-29  Score=232.09  Aligned_cols=220  Identities=21%  Similarity=0.259  Sum_probs=181.0

Q ss_pred             EeCCCcchHHHHHH-HHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-c
Q 024116           15 LVGERRDSQTYVRN-KIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E   92 (272)
Q Consensus        15 ~vg~~~~s~~Y~~~-~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~   92 (272)
                      .+| +|.+++|... ++++|+++|+++.|..|+.  ++++|.+.++.++. ++++|++||+|+|.++  ..+++.++| .
T Consensus        28 viG-~pi~hS~Sp~~hn~~~~~~Gl~~~Y~~~~~--~~~~l~~~v~~l~~-~~~~G~nVTiP~K~~i--~~~ld~~~~~A  101 (297)
T 2egg_A           28 LIG-FPVEHSLSPLMHNDAFARLGIPARYHLFSV--EPGQVGAAIAGVRA-LGIAGVNVTIPHKLAV--IPFLDEVDEHA  101 (297)
T ss_dssp             EEE-SSCTTCSHHHHHHHHHHHTTCCEEEEEEEC--CTTCHHHHHHHHHH-HTCCEEEECTTCTTTT--GGGCSEECHHH
T ss_pred             EEC-CCcccccCHHHHHHHHHHcCcCcEEEEEEc--CHHHHHHHHHHHhh-CCCCeEEECCcCHHHH--HHHHHHHhHHH
Confidence            345 6777777654 5699999999999999954  67889999999985 5899999999999965  789999999 6


Q ss_pred             cccCccccc--cccccccCCCCCccccCCHHHHHHHHHHhC-CCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeC
Q 024116           93 KDVDGFHPL--NIGNLAMRGREPLFIPCTPKGCIELLIRSG-VEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  168 (272)
Q Consensus        93 KDvdg~~~~--n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~-~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~  168 (272)
                      |++++++.+  +.|++. |+++++      .|+++.|++++ ++++||+++|+|+|++ |++++..|.+.|+ +|++++|
T Consensus       102 ~~iGavNti~~~~g~l~-g~nTd~------~G~~~~l~~~~~~~l~~~~vlVlGaGg~-g~aia~~L~~~G~~~V~v~nR  173 (297)
T 2egg_A          102 RRIGAVNTIINNDGRLV-GYNTDG------LGYVQALEEEMNITLDGKRILVIGAGGG-ARGIYFSLLSTAAERIDMANR  173 (297)
T ss_dssp             HHHTCCCEEEEETTEEE-EECCHH------HHHHHHHHHHTTCCCTTCEEEEECCSHH-HHHHHHHHHTTTCSEEEEECS
T ss_pred             HHhCCCCeEECcCCeEe-eccCCH------HHHHHHHHHhCCCCCCCCEEEEECcHHH-HHHHHHHHHHCCCCEEEEEeC
Confidence            999999765  577776 665655      99999999988 8999999999999996 9999999999998 9999998


Q ss_pred             CCC--------------------CHhhhcCCCcEEEEecCCCc-------cccCCCcCCCcEEEEeeeCCCCCCCCCCCC
Q 024116          169 LTK--------------------NPEQITSEADIVIAAAGVAN-------LVRGSWLKPGAVVLDVGTCPVDVSVDPSCE  221 (272)
Q Consensus       169 ~t~--------------------~l~~~l~~ADIVIsa~g~p~-------~i~~~~vk~g~vviDig~~~~~~~~~~~~~  221 (272)
                      +..                    ++.+.++++|+||++|+.+.       .++.++++++.+|+|+.|+|.+        
T Consensus       174 ~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y~P~~--------  245 (297)
T 2egg_A          174 TVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYNPLE--------  245 (297)
T ss_dssp             SHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCSSCCSCCSSCCTTCCTTCEEEECCCSSSS--------
T ss_pred             CHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEcCCCCCC--------
Confidence            731                    23455688999999998543       2567889999999999999865        


Q ss_pred             CCceEecccchhhhhhhceEeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          222 YGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       222 ~~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                        ++|.     +. ++++++ +.++| ++     ||+.|++++|++|+|.
T Consensus       246 --T~ll-----~~-A~~~G~-~~v~G-l~-----MLv~Qa~~af~~w~g~  280 (297)
T 2egg_A          246 --TKWL-----KE-AKARGA-RVQNG-VG-----MLVYQGALAFEKWTGQ  280 (297)
T ss_dssp             --CHHH-----HH-HHHTTC-EEECS-HH-----HHHHHHHHHHHHHHSC
T ss_pred             --CHHH-----HH-HHHCcC-EEECC-HH-----HHHHHHHHHHHHHhCC
Confidence              5555     44 566676 34664 55     9999999999999985

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=99.96  E-value=3.1e-29  Score=227.80  Aligned_cols=210  Identities=16%  Similarity=0.153  Sum_probs=172.5

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-ccccCccc-ccc-c
Q 024116           27 RNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EKDVDGFH-PLN-I  103 (272)
Q Consensus        27 ~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~KDvdg~~-~~n-~  103 (272)
                      ..++.+|+++|+++.|..|+.  ++++|.+.++.+.. .++.|++||+|+|.  +..++++.++| ++.+.+++ .++ .
T Consensus        17 ~~hn~~f~~~gl~~~Y~~~~v--~~~~l~~~~~~~~~-~~~~G~nVTiP~K~--~v~~~~d~l~~~A~~iGAVNTv~~~~   91 (277)
T 3don_A           17 LMHHANFQSLNLENTYEAINV--PVNQFQDIKKIISE-KSIDGFNVTIPHKE--RIIPYLDDINEQAKSVGAVNTVLVKD   91 (277)
T ss_dssp             HHHHHHHHHTTCCCEEEEEEC--CGGGGGGHHHHHHH-TTCSEEEECTTCTT--TTGGGCSEECHHHHHHTCCCEEEEET
T ss_pred             HHHHHHHHHcCcCcEEEEEEc--CHHHHHHHHHHHhh-CCCCEEEECcCCHH--HHHHHhhhCCHHHHHhCceeEEEecC
Confidence            378999999999999999965  66778888888876 47999999999998  55788899999 88888874 344 4


Q ss_pred             cccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC-----------
Q 024116          104 GNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK-----------  171 (272)
Q Consensus       104 g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t~-----------  171 (272)
                      |++. |+|+|+      .|+++.|++.+++++||+++|+|+|++ |++++..|.+.|+ +|++++|+.+           
T Consensus        92 g~l~-G~NTD~------~G~~~~L~~~~~~l~~k~vlvlGaGg~-g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~  163 (277)
T 3don_A           92 GKWI-GYNTDG------IGYVNGLKQIYEGIEDAYILILGAGGA-SKGIANELYKIVRPTLTVANRTMSRFNNWSLNINK  163 (277)
T ss_dssp             TEEE-EECCHH------HHHHHHHHHHSTTGGGCCEEEECCSHH-HHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEE
T ss_pred             CEEE-EECChH------HHHHHHHHHhCCCcCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhccc
Confidence            5555 666665      999999999999999999999999997 9999999999998 8999999742           


Q ss_pred             ----CHhhhcCCCcEEEEecCC---Cc---cccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceE
Q 024116          172 ----NPEQITSEADIVIAAAGV---AN---LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASV  241 (272)
Q Consensus       172 ----~l~~~l~~ADIVIsa~g~---p~---~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~  241 (272)
                          ++.+.++++|+||++|+.   |+   .++.++++++.+|+|+.|+|.+          |+|.     +. +++.++
T Consensus       164 ~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~l~~~~l~~~~~V~D~vY~P~~----------T~ll-----~~-A~~~G~  227 (277)
T 3don_A          164 INLSHAESHLDEFDIIINTTPAGMNGNTDSVISLNRLASHTLVSDIVYNPYK----------TPIL-----IE-AEQRGN  227 (277)
T ss_dssp             ECHHHHHHTGGGCSEEEECCC-------CCSSCCTTCCSSCEEEESCCSSSS----------CHHH-----HH-HHHTTC
T ss_pred             ccHhhHHHHhcCCCEEEECccCCCCCCCcCCCCHHHcCCCCEEEEecCCCCC----------CHHH-----HH-HHHCcC
Confidence                234557899999999874   32   2577889999999999999865          5565     45 566776


Q ss_pred             eccCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 024116          242 ITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  272 (272)
Q Consensus       242 ~tpvpGGvGp~T~amL~~n~v~a~~~~~~~~  272 (272)
                        ++-+|.+     ||++|++++|+.|+|.+
T Consensus       228 --~~~~Gl~-----MLv~Qa~~~f~lwtg~~  251 (277)
T 3don_A          228 --PIYNGLD-----MFVHQGAESFKIWTNLE  251 (277)
T ss_dssp             --CEECTHH-----HHHHHHHHHHHHHHSSC
T ss_pred             --EEeCCHH-----HHHHHHHHHHHHHcCCC
Confidence              4566777     99999999999999863

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=99.96  E-value=8.9e-29  Score=225.33  Aligned_cols=213  Identities=17%  Similarity=0.170  Sum_probs=175.2

Q ss_pred             HHHHHHHHHHcCCeEEEEEcCC---CCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-ccccCccc-c
Q 024116           26 VRNKIKACEEVGIKSIVTEFAD---GCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EKDVDGFH-P  100 (272)
Q Consensus        26 ~~~~~~~~~~~Gi~~~~~~l~~---~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~KDvdg~~-~  100 (272)
                      =..|+.+|+++|+++.|..|+.   .+++++|.+.++.+.. +++.|++||+|+|.  +..++++.+++ .+.+.+++ .
T Consensus        20 P~~hn~~f~~~gl~~~Y~~~~~~~~~v~~~~l~~~~~~~~~-~~~~G~nVTiP~K~--~v~~~lD~l~~~A~~iGAVNTv   96 (283)
T 3jyo_A           20 PAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALY-LGFNGLNITHPYKQ--AVLPLLDEVSEQATQLGAVNTV   96 (283)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEETTSTTTTTCCHHHHHHHHHH-TTCCEEEECTTCTT--TTGGGSSEECHHHHHHTCCCEE
T ss_pred             HHHHHHHHHHcCCCeEEEEEEccccCCCHHHHHHHHHHHhh-CCCCEEEECcccHH--HHHHHhhhCCHHHHHhCcceEE
Confidence            3479999999999999999953   2356778888888876 68999999999998  55788999999 88888874 3


Q ss_pred             cc--ccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC------
Q 024116          101 LN--IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK------  171 (272)
Q Consensus       101 ~n--~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t~------  171 (272)
                      ++  .|++. |+|+|+      .|+++.|++.+.+++||+++|+|+|++ |++++..|.+.|+ +|++++|+.+      
T Consensus        97 ~~~~~g~l~-G~NTD~------~G~~~~l~~~~~~l~~k~vlVlGaGG~-g~aia~~L~~~G~~~v~i~~R~~~~a~~la  168 (283)
T 3jyo_A           97 VIDATGHTT-GHNTDV------SGFGRGMEEGLPNAKLDSVVQVGAGGV-GNAVAYALVTHGVQKLQVADLDTSRAQALA  168 (283)
T ss_dssp             EECTTSCEE-EECHHH------HHHHHHHHHHCTTCCCSEEEEECCSHH-HHHHHHHHHHTTCSEEEEECSSHHHHHHHH
T ss_pred             EECCCCeEE-EecCCH------HHHHHHHHHhCcCcCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence            34  35554 666665      999999999999999999999999997 9999999999998 7999998731      


Q ss_pred             ------------------CHhhhcCCCcEEEEecCC---Cc---cccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEe
Q 024116          172 ------------------NPEQITSEADIVIAAAGV---AN---LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLM  227 (272)
Q Consensus       172 ------------------~l~~~l~~ADIVIsa~g~---p~---~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~  227 (272)
                                        ++.+.++++|+||++|+.   |+   .++.++++++.+|+|+.|+|.+          |.|+
T Consensus       169 ~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp~Gm~~~~~~pi~~~~l~~~~~v~DlvY~P~~----------T~ll  238 (283)
T 3jyo_A          169 DVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIE----------TELL  238 (283)
T ss_dssp             HHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSSTTSTTSCSCSSCGGGCCTTCEEEECCCSSSS----------CHHH
T ss_pred             HHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCCCCCCCCCCCCCCHHHhCCCCEEEEecCCCCC----------CHHH
Confidence                              444566789999999973   32   3677889999999999999976          6777


Q ss_pred             cccchhhhhhhceEeccCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 024116          228 GDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  272 (272)
Q Consensus       228 Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~~  272 (272)
                           +. +++.++  ++-+|.+     ||++|++++|+.|+|..
T Consensus       239 -----~~-A~~~G~--~~~~Gl~-----MLv~Qa~~~f~lwtg~~  270 (283)
T 3jyo_A          239 -----KA-ARALGC--ETLDGTR-----MAIHQAVDAFRLFTGLE  270 (283)
T ss_dssp             -----HH-HHHHTC--CEECTHH-----HHHHHHHHHHHHHHSCC
T ss_pred             -----HH-HHHCcC--eEeCcHH-----HHHHHHHHHHHHHcCCC
Confidence                 55 566776  5667777     99999999999999963

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.95  E-value=2.5e-28  Score=218.66  Aligned_cols=217  Identities=18%  Similarity=0.242  Sum_probs=180.4

Q ss_pred             EeCCCcchHHHH-HHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-c
Q 024116           15 LVGERRDSQTYV-RNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E   92 (272)
Q Consensus        15 ~vg~~~~s~~Y~-~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~   92 (272)
                      .+| +|-+++|- ..|+++|+++|+++.|..++  ++++++.+.++.++.+  ++|++||+|+|+++  ..+++.+++ .
T Consensus         6 ~~G-~pi~hs~sp~~h~~~~~~~g~~~~y~~~~--~~~~~l~~~i~~l~~~--~~G~~vt~P~k~~i--~~~~~~l~~~a   78 (263)
T 2d5c_A            6 VLG-HPVAHSLSPAMHAFALESLGLEGSYEAWD--TPLEALPGRLKEVRRA--FRGVNLTLPLKEAA--LAHLDWVSPEA   78 (263)
T ss_dssp             EEE-SSCTTCSHHHHHHHHHHHTTCCEEEEEEE--CCGGGHHHHHHHHHHH--CSEEEECTTCTTGG--GGGCSEECHHH
T ss_pred             EEC-CCcccccCHHHHHHHHHHcCCCCEEEEEe--CCHHHHHHHHHhcccc--CceEEEcccCHHHH--HHHHHHHhHHH
Confidence            346 78888888 89999999999999999984  4788999999999986  99999999999955  778889999 9


Q ss_pred             cccCccccc--cccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116           93 KDVDGFHPL--NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus        93 KDvdg~~~~--n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      |+++|++.+  +.|++. |++++.      .|++..|++++++++| +++|||+|++ |++++..|.+.|++|++++|+.
T Consensus        79 ~~~gavn~i~~~~g~~~-g~ntd~------~g~~~~l~~~~~~l~~-~v~iiG~G~~-g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A           79 QRIGAVNTVLQVEGRLF-GFNTDA------PGFLEALKAGGIPLKG-PALVLGAGGA-GRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             HHHTCCCEEEEETTEEE-EECCHH------HHHHHHHHHTTCCCCS-CEEEECCSHH-HHHHHHHHHHTTCCEEEECSSH
T ss_pred             HHhCCCCcEEccCCeEE-EeCCCH------HHHHHHHHHhCCCCCC-eEEEECCcHH-HHHHHHHHHHCCCEEEEEECCH
Confidence            999999877  677775 544443      8999999999999999 9999999995 9999999999999999999874


Q ss_pred             C--------------CHhhhcCCCcEEEEecCCC------ccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEeccc
Q 024116          171 K--------------NPEQITSEADIVIAAAGVA------NLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDV  230 (272)
Q Consensus       171 ~--------------~l~~~l~~ADIVIsa~g~p------~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdv  230 (272)
                      +              ++.+. +++|+||++++.+      ..++.+++++|.+|+|++++|.+          +++.   
T Consensus       150 ~~~~~l~~~~~~~~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~~~~l~~g~~viD~~~~p~~----------t~l~---  215 (263)
T 2d5c_A          150 QRALALAEEFGLRAVPLEKA-REARLLVNATRVGLEDPSASPLPAELFPEEGAAVDLVYRPLW----------TRFL---  215 (263)
T ss_dssp             HHHHHHHHHHTCEECCGGGG-GGCSEEEECSSTTTTCTTCCSSCGGGSCSSSEEEESCCSSSS----------CHHH---
T ss_pred             HHHHHHHHHhccchhhHhhc-cCCCEEEEccCCCCCCCCCCCCCHHHcCCCCEEEEeecCCcc----------cHHH---
Confidence            2              24455 8899999999854      23566788999999999998754          3343   


Q ss_pred             chhhhhhhceEeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          231 CYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       231 d~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                        +. +++.++ ++++|      ..||+.|.+.++++|+|.
T Consensus       216 --~~-a~~~g~-~~v~g------~~mlv~q~~~a~~~w~g~  246 (263)
T 2d5c_A          216 --RE-AKAKGL-KVQTG------LPMLAWQGALAFRLWTGL  246 (263)
T ss_dssp             --HH-HHHTTC-EEECS------HHHHHHHHHHHHHHHHSC
T ss_pred             --HH-HHHCcC-EEECc------HHHHHHHHHHHHHHHhCC
Confidence              33 445555 45765      669999999999999985

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.95  E-value=1.7e-28  Score=221.81  Aligned_cols=218  Identities=17%  Similarity=0.259  Sum_probs=180.9

Q ss_pred             EeCCCcchHHHHH-HHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-c
Q 024116           15 LVGERRDSQTYVR-NKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E   92 (272)
Q Consensus        15 ~vg~~~~s~~Y~~-~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~   92 (272)
                      ++| +|.+++|.. .++++|+++|+++.|..|+  +++++|.+.++.++. ++++|++||+|+|+++  ..+++.+++ .
T Consensus        17 liG-~pi~hs~sp~~h~~~~~~~g~~~~y~~~~--~~~~~l~~~i~~l~~-~~~~G~nvtiP~k~~i--~~~ld~l~~~A   90 (275)
T 2hk9_A           17 VIG-FPVKHSLSPVFQNALIRYAGLNAVYLAFE--INPEELKKAFEGFKA-LKVKGINVTVPFKEEI--IPLLDYVEDTA   90 (275)
T ss_dssp             EEE-SSCTTCSHHHHHHHHHHHHTCSEEEEEEE--CCGGGHHHHHHHHHH-HTCCEEEECTTSTTTT--GGGCSEECHHH
T ss_pred             EEC-CCcccccCHHHHHHHHHHcCCCcEEEEEE--CCHHHHHHHHHHHHh-CCCCEEEECccCHHHH--HHHHHHhhHHH
Confidence            568 999999996 7889999999999999995  478899999999996 6899999999999855  778889999 6


Q ss_pred             cccCccccc--cccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116           93 KDVDGFHPL--NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus        93 KDvdg~~~~--n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++++++.+  +.|++. |+      ++++.|++..|++++++++|++++|||+|++ |++++..|.+.|++|++++|+.
T Consensus        91 ~~~gavnti~~~~g~~~-g~------nTd~~G~~~~l~~~~~~~~~~~v~iiGaG~~-g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A           91 KEIGAVNTVKFENGKAY-GY------NTDWIGFLKSLKSLIPEVKEKSILVLGAGGA-SRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             HHHTCCCEEEEETTEEE-EE------CCHHHHHHHHHHHHCTTGGGSEEEEECCSHH-HHHHHHHHHHHTCEEEEECSSH
T ss_pred             HHhCCcceEEeeCCEEE-ee------cCCHHHHHHHHHHhCCCcCCCEEEEECchHH-HHHHHHHHHHcCCEEEEEECCH
Confidence            999999765  356664 43      4566999999999999999999999999986 9999999999999999999873


Q ss_pred             C---------------CHhhhcCCCcEEEEecCCCc------cccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecc
Q 024116          171 K---------------NPEQITSEADIVIAAAGVAN------LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGD  229 (272)
Q Consensus       171 ~---------------~l~~~l~~ADIVIsa~g~p~------~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gd  229 (272)
                      +               ++.+.++++|+||++|+...      .++.++++++.+|+|+++  ..          +++.  
T Consensus       163 ~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i~~~~l~~g~~viDv~~--~~----------t~ll--  228 (275)
T 2hk9_A          163 EKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFNYDLIKKDHVVVDIIY--KE----------TKLL--  228 (275)
T ss_dssp             HHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTTCCCSSCGGGCCTTSEEEESSS--SC----------CHHH--
T ss_pred             HHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCCCCCCCHHHcCCCCEEEEcCC--Ch----------HHHH--
Confidence            1               56677889999999998532      355678899999999998  32          4444  


Q ss_pred             cchhhhhhhceEeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          230 VCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       230 vd~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                         +. +++.++ +.+||      ..||+.|.+.++++|+|.
T Consensus       229 ---~~-a~~~g~-~~v~g------~~mlv~q~~~a~~~w~g~  259 (275)
T 2hk9_A          229 ---KK-AKEKGA-KLLDG------LPMLLWQGIEAFKIWNGC  259 (275)
T ss_dssp             ---HH-HHHTTC-EEECS------HHHHHHHHHHHHHHHHCC
T ss_pred             ---HH-HHHCcC-EEECC------HHHHHHHHHHHHHHHHCC
Confidence               44 344554 35776      669999999999999985

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=99.95  E-value=1.1e-28  Score=223.62  Aligned_cols=211  Identities=11%  Similarity=0.069  Sum_probs=170.2

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-ccccCccc-ccc-c
Q 024116           27 RNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EKDVDGFH-PLN-I  103 (272)
Q Consensus        27 ~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~KDvdg~~-~~n-~  103 (272)
                      ..|+.+|+++|+++.|..|+.  ++++|.+.++.+.. +++.|++||+|+|.  +..++++.+++ .+.+.+++ ..+ .
T Consensus        19 ~~hn~~f~~~gl~~~Y~~~~v--~~~~l~~~~~~~~~-~~~~G~nVTiP~K~--~v~~~~d~l~~~A~~iGAvNTv~~~~   93 (272)
T 3pwz_A           19 LIHGLFAQASNQQLEYGAIEG--SLDDFEAQVLQFRS-EGGKGMNITAPFKL--RAFELADRRSERAQLARAANALKFED   93 (272)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEC--CTTTHHHHHHHHHH-TTCCEEEECTTCHH--HHHHHCSEECHHHHHHTCCSEEEEET
T ss_pred             HHHHHHHHHcCCCcEEEEEEc--CHHHHHHHHHHHhh-CCCCEEEECchhHH--HHHHHHhhCCHHHHHhCccceEEccC
Confidence            489999999999999999965  56789999998876 68999999999997  55778888888 78887774 334 3


Q ss_pred             cccccCCCCCccccCCHHHHHHH-HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCCCHh-------
Q 024116          104 GNLAMRGREPLFIPCTPKGCIEL-LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTKNPE-------  174 (272)
Q Consensus       104 g~l~~~~~~~~~~p~Ta~g~~~~-l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t~~l~-------  174 (272)
                      |++. |+|+|+      .|+++. |++.+++++||+++|+|+|++ |++++..|.+.|+ +|++++|+.+..+       
T Consensus        94 g~l~-G~NTD~------~G~~~~lL~~~~~~l~~k~~lvlGaGg~-~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~  165 (272)
T 3pwz_A           94 GRIV-AENFDG------IGLLRDIEENLGEPLRNRRVLLLGAGGA-VRGALLPFLQAGPSELVIANRDMAKALALRNELD  165 (272)
T ss_dssp             TEEE-EECCHH------HHHHHHHHTTSCCCCTTSEEEEECCSHH-HHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHC
T ss_pred             CeEE-EecCCH------HHHHHHHHHHcCCCccCCEEEEECccHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhc
Confidence            5554 666665      999997 988899999999999999997 9999999999996 9999999742211       


Q ss_pred             ----------hhc-CCCcEEEEecCCC---c--cccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhh
Q 024116          175 ----------QIT-SEADIVIAAAGVA---N--LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRL  238 (272)
Q Consensus       175 ----------~~l-~~ADIVIsa~g~p---~--~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~  238 (272)
                                +.- +++|+||++|+..   +  .++.++++++.+|+|+.|+|.+          |+|+     +. +++
T Consensus       166 ~~~~~~~~~~~l~~~~~DivInaTp~gm~~~~~~i~~~~l~~~~~V~DlvY~P~~----------T~ll-----~~-A~~  229 (272)
T 3pwz_A          166 HSRLRISRYEALEGQSFDIVVNATSASLTADLPPLPADVLGEAALAYELAYGKGL----------TPFL-----RL-ARE  229 (272)
T ss_dssp             CTTEEEECSGGGTTCCCSEEEECSSGGGGTCCCCCCGGGGTTCSEEEESSCSCCS----------CHHH-----HH-HHH
T ss_pred             cCCeeEeeHHHhcccCCCEEEECCCCCCCCCCCCCCHHHhCcCCEEEEeecCCCC----------CHHH-----HH-HHH
Confidence                      111 6899999999742   2  3677899999999999999875          6676     55 566


Q ss_pred             ceEeccCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 024116          239 ASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  272 (272)
Q Consensus       239 ~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~~  272 (272)
                      .++. .+-+|.+     ||++|++++|+.|+|..
T Consensus       230 ~G~~-~~~~Gl~-----ML~~Qa~~~f~lwtg~~  257 (272)
T 3pwz_A          230 QGQA-RLADGVG-----MLVEQAAEAFAWWRGVR  257 (272)
T ss_dssp             HSCC-EEECTHH-----HHHHHHHHHHHHHHSCC
T ss_pred             CCCC-EEECCHH-----HHHHHHHHHHHHHhCCC
Confidence            6752 1556777     99999999999999963

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=99.95  E-value=2.6e-28  Score=225.11  Aligned_cols=210  Identities=20%  Similarity=0.219  Sum_probs=171.5

Q ss_pred             HHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-ccccCccc-ccc-
Q 024116           26 VRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EKDVDGFH-PLN-  102 (272)
Q Consensus        26 ~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~KDvdg~~-~~n-  102 (272)
                      =..++.+|+++|+++.|..|+.  ++++|.+.++.+.. .++.|++||+|+|.  +..++++.++| ++.+.+++ .++ 
T Consensus        47 P~ihn~~f~~~gl~~~Y~~~~v--~~~~l~~~~~~~~~-~~~~G~nVTiP~K~--~v~~~lD~ls~~A~~iGAVNTi~~~  121 (312)
T 3t4e_A           47 PEMQNKALEKAGLPYTYMAFEV--DNTTFASAIEGLKA-LKMRGTGVSMPNKQ--LACEYVDELTPAAKLVGAINTIVND  121 (312)
T ss_dssp             HHHHHHHHHHHTCSEEEEEEEC--CTTTHHHHHHHHHH-TTCCEEEECTTSHH--HHGGGCSEECHHHHHHTCCSEEEEE
T ss_pred             HHHHHHHHHHcCCCcEEEeEec--CHHHHHHHHHHHhh-CCCCEEEECchhHH--HHHHHhhhcCHHHHHhCceeEEEec
Confidence            3489999999999999999965  56788888888886 57999999999997  55677777888 78887774 344 


Q ss_pred             ccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC----------
Q 024116          103 IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK----------  171 (272)
Q Consensus       103 ~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t~----------  171 (272)
                      .|++. |+|+|+      .|+++.|++.+++++||+++|+|+|++ |++++..|.+.|+ +|+|++|+.+          
T Consensus       122 ~g~l~-G~NTD~------~Gf~~~L~~~~~~l~gk~~lVlGAGGa-araia~~L~~~G~~~v~v~nRt~~~~~~a~~la~  193 (312)
T 3t4e_A          122 DGYLR-GYNTDG------TGHIRAIKESGFDMRGKTMVLLGAGGA-ATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAK  193 (312)
T ss_dssp             TTEEE-EECHHH------HHHHHHHHHTTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHH
T ss_pred             CCEEE-EeCCcH------HHHHHHHHhcCCCcCCCEEEEECcCHH-HHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHH
Confidence            45555 666665      999999999999999999999999997 9999999999998 8999999821          


Q ss_pred             ----------------CH---hhhcCCCcEEEEecCC---Cc---cc--cCCCcCCCcEEEEeeeCCCCCCCCCCCCCCc
Q 024116          172 ----------------NP---EQITSEADIVIAAAGV---AN---LV--RGSWLKPGAVVLDVGTCPVDVSVDPSCEYGY  224 (272)
Q Consensus       172 ----------------~l---~~~l~~ADIVIsa~g~---p~---~i--~~~~vk~g~vviDig~~~~~~~~~~~~~~~~  224 (272)
                                      ++   .+.+.++|+||++|+.   |.   .+  +.++++++.+|+|+.|+|.+          |
T Consensus       194 ~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiIINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~----------T  263 (312)
T 3t4e_A          194 RVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECVYNPHM----------T  263 (312)
T ss_dssp             HHHHHSSCEEEEEETTCHHHHHHHHHHCSEEEECSSTTSTTSTTCCSCCCGGGSCTTCEEEECCCSSSS----------C
T ss_pred             HhhhccCcceEEechHhhhhhHhhccCceEEEECCcCCCCCCCCCcccCCHHHcCCCCEEEEeccCCCC----------C
Confidence                            11   2345689999999973   22   12  55788999999999999976          6


Q ss_pred             eEecccchhhhhhhceEeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          225 RLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       225 k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                      +|+     +. +++.++  ++-+|.+     ||++|++++|+.|+|.
T Consensus       264 ~ll-----~~-A~~~G~--~~~~Gl~-----MLv~Qa~~af~lwtg~  297 (312)
T 3t4e_A          264 KLL-----QQ-AQQAGC--KTIDGYG-----MLLWQGAEQFELWTGK  297 (312)
T ss_dssp             HHH-----HH-HHHTTC--EEECHHH-----HHHHHHHHHHHHHHSS
T ss_pred             HHH-----HH-HHHCCC--eEECcHH-----HHHHHHHHHHHHHhCC
Confidence            777     55 666777  4567787     9999999999999985

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=99.95  E-value=2.1e-28  Score=222.70  Aligned_cols=210  Identities=14%  Similarity=0.135  Sum_probs=170.3

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-ccccCccc-cc-c-
Q 024116           27 RNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EKDVDGFH-PL-N-  102 (272)
Q Consensus        27 ~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~KDvdg~~-~~-n-  102 (272)
                      ..|+.+|+++|+++.|..|+.  ++++|.+.++.+.. +++.|++||+|+|.  +..++++.++| .+.+.+++ .+ + 
T Consensus        25 ~~hn~~f~~~gl~~~Y~~~~v--~~~~l~~~~~~~~~-~~~~G~nVTiP~K~--~v~~~ld~l~~~A~~iGAVNTv~~~~   99 (281)
T 3o8q_A           25 FIHTLFARQTQQSMIYTAQCV--PVDGFTEAAKHFFA-QGGRGCNVTVPFKE--EAYRFADRLTERARLAGAVNTLKKLD   99 (281)
T ss_dssp             HHHHHHHHHTTCCEEEEEECC--CTTCHHHHHHHHHH-TTCCEEEECTTSHH--HHHHHCSEECHHHHHHTCCSEEEECT
T ss_pred             HHHHHHHHHcCCCcEEEEeec--CHHHHHHHHHHHHh-CCCCEEEECCccHH--HHHHHHhhcCHHHHhhCeeeEEEEcC
Confidence            489999999999999999965  56789999998885 58999999999997  55778888888 78888774 33 2 


Q ss_pred             ccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCCCH--------
Q 024116          103 IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTKNP--------  173 (272)
Q Consensus       103 ~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t~~l--------  173 (272)
                      .|++. |+|+|+      .|+++.|++.+++++||+++|+|+|++ |++++..|.+.|+ +|++++|+....        
T Consensus       100 ~g~l~-G~NTD~------~G~~~~L~~~~~~l~~k~vlvlGaGg~-g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~  171 (281)
T 3o8q_A          100 DGEIL-GDNTDG------EGLVQDLLAQQVLLKGATILLIGAGGA-ARGVLKPLLDQQPASITVTNRTFAKAEQLAELVA  171 (281)
T ss_dssp             TSCEE-EECCHH------HHHHHHHHHTTCCCTTCEEEEECCSHH-HHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHG
T ss_pred             CCcEE-EEecHH------HHHHHHHHHhCCCccCCEEEEECchHH-HHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhh
Confidence            35555 666665      999999999999999999999999996 9999999999996 999999975221        


Q ss_pred             ----------hhhcCCCcEEEEecCCC-----ccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhh
Q 024116          174 ----------EQITSEADIVIAAAGVA-----NLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRL  238 (272)
Q Consensus       174 ----------~~~l~~ADIVIsa~g~p-----~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~  238 (272)
                                .+..+++|+||++|+..     ..++.++++++.+|+|+.|+|.+          |+|+     +. +++
T Consensus       172 ~~~~~~~~~~~~l~~~aDiIInaTp~gm~~~~~~l~~~~l~~~~~V~DlvY~P~~----------T~ll-----~~-A~~  235 (281)
T 3o8q_A          172 AYGEVKAQAFEQLKQSYDVIINSTSASLDGELPAIDPVIFSSRSVCYDMMYGKGY----------TVFN-----QW-ARQ  235 (281)
T ss_dssp             GGSCEEEEEGGGCCSCEEEEEECSCCCC----CSCCGGGEEEEEEEEESCCCSSC----------CHHH-----HH-HHH
T ss_pred             ccCCeeEeeHHHhcCCCCEEEEcCcCCCCCCCCCCCHHHhCcCCEEEEecCCCcc----------CHHH-----HH-HHH
Confidence                      12226899999999853     13677889999999999999865          6666     55 566


Q ss_pred             ceEeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          239 ASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       239 ~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                      .++. .+-+|.+     ||++|.+++|+.|+|.
T Consensus       236 ~G~~-~~~~Gl~-----Mlv~Qa~~~f~lwtg~  262 (281)
T 3o8q_A          236 HGCA-QAIDGLG-----MLVGQAAESFMLWRGL  262 (281)
T ss_dssp             TTCS-EEECTHH-----HHHHHHHHHHHHHHSC
T ss_pred             CCCC-EEECcHH-----HHHHHHHHHHHHHhCC
Confidence            6752 1456777     9999999999999996

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=99.93  E-value=1.1e-26  Score=210.23  Aligned_cols=202  Identities=14%  Similarity=0.131  Sum_probs=159.3

Q ss_pred             HHHHHHH----HHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-ccccCccc-c
Q 024116           27 RNKIKAC----EEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EKDVDGFH-P  100 (272)
Q Consensus        27 ~~~~~~~----~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~KDvdg~~-~  100 (272)
                      ..++.+|    +++|+++.|..|+.    +++.+.++.+.. +++.|++||+|+|.  +..++++.++| ++.+.+++ .
T Consensus        20 ~~hn~~f~~~~~~~gl~~~Y~~~~v----~~l~~~~~~~~~-~~~~G~nVTiP~K~--~v~~~~d~l~~~A~~iGAVNTi   92 (269)
T 3phh_A           20 LIHNACFLTFQKELRFLGHYHPILL----PLESHIKSEFLH-LGLSGANVTLPFKE--RAFQVCDKIKGIALECGAVNTL   92 (269)
T ss_dssp             HHHHHHHHHHHHHHSSEEEEEEEEC----CSSSCHHHHHHH-TTEEEEEECTTCHH--HHHHHSSEECGGGGGTTCCCEE
T ss_pred             HHHHHHHHHHHHHcCCCCEEeeEEh----hhHHHHHHHHhh-CCCCEEEEccccHH--HHHHHHhhcCHHHHHhCceeEE
Confidence            4788999    99999999999976    345566666665 67999999999997  66778888888 78877774 3


Q ss_pred             cc-ccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhhh---
Q 024116          101 LN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQI---  176 (272)
Q Consensus       101 ~n-~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l~~~---  176 (272)
                      ++ .|++. |+|+|+      .|+++.|++.+    ||+++|+|+|++ |++++..|.+.|++|++++|+.+..++.   
T Consensus        93 ~~~~g~l~-G~NTD~------~Gf~~~L~~~~----~k~vlvlGaGGa-araia~~L~~~G~~v~V~nRt~~ka~~la~~  160 (269)
T 3phh_A           93 VLENDELV-GYNTDA------LGFYLSLKQKN----YQNALILGAGGS-AKALACELKKQGLQVSVLNRSSRGLDFFQRL  160 (269)
T ss_dssp             EEETTEEE-EECCHH------HHHHHHCC-------CCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCTTHHHHHHH
T ss_pred             EeeCCEEE-EecChH------HHHHHHHHHcC----CCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC
Confidence            33 45555 666665      99999998754    999999999997 9999999999999999999987554322   


Q ss_pred             ---------cCCCcEEEEecCC---Cc-cccCC----CcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhc
Q 024116          177 ---------TSEADIVIAAAGV---AN-LVRGS----WLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLA  239 (272)
Q Consensus       177 ---------l~~ADIVIsa~g~---p~-~i~~~----~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~  239 (272)
                               +.++|+||++|+.   ++ .++.+    .++++.+|+|+.|+| +          |+|.     +. +++.
T Consensus       161 ~~~~~~~~~l~~~DiVInaTp~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY~P-~----------T~ll-----~~-A~~~  223 (269)
T 3phh_A          161 GCDCFMEPPKSAFDLIINATSASLHNELPLNKEVLKGYFKEGKLAYDLAYGF-L----------TPFL-----SL-AKEL  223 (269)
T ss_dssp             TCEEESSCCSSCCSEEEECCTTCCCCSCSSCHHHHHHHHHHCSEEEESCCSS-C----------CHHH-----HH-HHHT
T ss_pred             CCeEecHHHhccCCEEEEcccCCCCCCCCCChHHHHhhCCCCCEEEEeCCCC-c----------hHHH-----HH-HHHC
Confidence                     3479999999874   22 35655    678899999999999 7          5666     55 5667


Q ss_pred             eEeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          240 SVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       240 ~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                      ++  ++-+|.+     ||++|++++++.|+|.
T Consensus       224 G~--~~~~Gl~-----MLv~Qa~~~f~lw~g~  248 (269)
T 3phh_A          224 KT--PFQDGKD-----MLIYQAALSFEKFSAS  248 (269)
T ss_dssp             TC--CEECSHH-----HHHHHHHHHHHHHTTT
T ss_pred             cC--EEECCHH-----HHHHHHHHHHHHHhCC
Confidence            76  4666777     9999999999999986

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=99.92  E-value=7.5e-26  Score=204.84  Aligned_cols=217  Identities=14%  Similarity=0.212  Sum_probs=170.0

Q ss_pred             EEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-c
Q 024116           14 ILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E   92 (272)
Q Consensus        14 i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~   92 (272)
                      =.+|+- .|.+=. .|+.+|+++|+++.|..|+    +++|.+.++.+.. .++.|++||+|+|.  +...+++.+++ .
T Consensus        11 ~viG~P-hS~SP~-~hn~~~~~~gl~~~Y~~~~----~~~l~~~~~~~~~-~~~~G~nVTiP~K~--~i~~~~d~~~~~A   81 (271)
T 1npy_A           11 SLSGRP-SNFGTT-FHNYLYDKLGLNFIYKAFT----TQDIEHAIKGVRA-LGIRGCAVSMPFKE--TCMPFLDEIHPSA   81 (271)
T ss_dssp             EECSSC-CSHHHH-HHHHHHHHHTCCEEEEEEC----CSCHHHHHHHHHH-HTCCEEEECTTCTT--TTGGGCSEECHHH
T ss_pred             EEECCC-CcccHH-HHHHHHHHcCCCcEEEeec----hhhHHHHHHHhcc-CCCCeEEECcCCHH--HHHHHHHHhhHHH
Confidence            356865 777666 8999999999999999997    2457777777765 36899999999998  44778888988 8


Q ss_pred             cccCccc-ccc-ccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024116           93 KDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (272)
Q Consensus        93 KDvdg~~-~~n-~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~  169 (272)
                      +.+.+++ .+| .|++. |+|+|+      .|+++.|++.+.+ .+++++|+|+|++ |++++..|...|+ +|+|++|+
T Consensus        82 ~~iGAvNTi~~~~g~l~-g~NTD~------~G~~~~l~~~~~~-~~~~vlvlGaGga-arav~~~L~~~G~~~i~v~nRt  152 (271)
T 1npy_A           82 QAIESVNTIVNDNGFLR-AYNTDY------IAIVKLIEKYHLN-KNAKVIVHGSGGM-AKAVVAAFKNSGFEKLKIYARN  152 (271)
T ss_dssp             HTTTCCCEEEEETTEEE-EECHHH------HHHHHHHHHTTCC-TTSCEEEECSSTT-HHHHHHHHHHTTCCCEEEECSC
T ss_pred             HHhCCCCceECcCCEEE-eecCCH------HHHHHHHHHhCCC-CCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCC
Confidence            8888884 344 45665 665655      9999999988775 7899999999997 9999999999997 89999997


Q ss_pred             CCC---Hh---------h-hcCCCcEEEEecCCCc--------c-ccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEe
Q 024116          170 TKN---PE---------Q-ITSEADIVIAAAGVAN--------L-VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLM  227 (272)
Q Consensus       170 t~~---l~---------~-~l~~ADIVIsa~g~p~--------~-i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~  227 (272)
                      ...   +.         + .+.++|+||++|+...        . ++.++++++.+|+|+.|+|.+          |.|.
T Consensus       153 ~~ka~~la~~~~~~~~~~~~~~~~DivInaTp~gm~~~~~~~~~~~~~~~l~~~~~v~DlvY~P~~----------T~ll  222 (271)
T 1npy_A          153 VKTGQYLAALYGYAYINSLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVE----------TPFI  222 (271)
T ss_dssp             HHHHHHHHHHHTCEEESCCTTCCCSEEEECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSSS----------CHHH
T ss_pred             HHHHHHHHHHcCCccchhhhcccCCEEEECCCCCccCccccCCCCCCHHHcCCCCEEEEeecCCCC----------CHHH
Confidence            421   11         0 1467999999998532        1 344567788999999999865          5566


Q ss_pred             cccchhhhhhhceEeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          228 GDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       228 Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                           +. +++.++  ++-+|.+     ||++|.+++|+.|+|.
T Consensus       223 -----~~-A~~~G~--~~i~Gl~-----MLv~Qa~~~f~lw~g~  253 (271)
T 1npy_A          223 -----RY-AQARGK--QTISGAA-----VIVLQAVEQFELYTHQ  253 (271)
T ss_dssp             -----HH-HHHTTC--EEECHHH-----HHHHHHHHHHHHHHSC
T ss_pred             -----HH-HHHCCC--EEECCHH-----HHHHHHHHHHHHHhCC
Confidence                 44 566776  3556777     9999999999999985

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=99.92  E-value=1e-25  Score=202.15  Aligned_cols=201  Identities=14%  Similarity=0.117  Sum_probs=160.2

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-ccccCccc-ccccc
Q 024116           27 RNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EKDVDGFH-PLNIG  104 (272)
Q Consensus        27 ~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~KDvdg~~-~~n~g  104 (272)
                      ..|+.+|+++|+++.|..|+.  ++++|.+.++.+.  +++.|++||+|||.  +..++++. +| .+.+.+++ .++. 
T Consensus        17 ~~hn~~~~~~gl~~~Y~~~~v--~~~~l~~~~~~~~--~~~~G~nVT~P~K~--~v~~~~d~-~~~A~~iGAvNTi~~~-   88 (253)
T 3u62_A           17 RLYNEYFKRAGMNHSYGMEEI--PPESFDTEIRRIL--EEYDGFNATIPHKE--RVMRYVEP-SEDAQRIKAVNCVFRG-   88 (253)
T ss_dssp             HHHHHHHHHHTCCCEEEEEEC--CGGGHHHHHHHHH--HHCSEEEECTTCTT--GGGGGSEE-CHHHHHHTCCCEEETT-
T ss_pred             HHHHHHHHHcCCCCEEEeEec--CHHHHHHHHHHHh--hCCCceeecCChHH--HHHHHhCC-CHHHHHcCcceEeecC-
Confidence            479999999999999999965  6788999999988  67999999999998  55778888 88 77777763 2332 


Q ss_pred             ccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-------------
Q 024116          105 NLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------  170 (272)
Q Consensus       105 ~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t-------------  170 (272)
                         .|+|+|+      .|+++.|++.  +++| +++|+|+|++ |++++..|.+.|+ +|++++|+.             
T Consensus        89 ---~G~NTD~------~G~~~~l~~~--~~~~-~vliiGaGg~-a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~  155 (253)
T 3u62_A           89 ---KGYNTDW------VGVVKSLEGV--EVKE-PVVVVGAGGA-ARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIF  155 (253)
T ss_dssp             ---EEECCHH------HHHHHHTTTC--CCCS-SEEEECCSHH-HHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEE
T ss_pred             ---EEEcchH------HHHHHHHHhc--CCCC-eEEEECcHHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccC
Confidence               4766665      9999999866  5789 9999999997 9999999999998 899999873             


Q ss_pred             --CCHhhhcCCCcEEEEecCC---Cc--cccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEec
Q 024116          171 --KNPEQITSEADIVIAAAGV---AN--LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVIT  243 (272)
Q Consensus       171 --~~l~~~l~~ADIVIsa~g~---p~--~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~t  243 (272)
                        .++.+.++++|+||++|+.   |+  .++.++++++.+|+|+.|+  +          +.++     +. ++..++-.
T Consensus       156 ~~~~~~~~~~~aDiVInatp~gm~p~~~~i~~~~l~~~~~V~Divy~--~----------T~ll-----~~-A~~~G~~~  217 (253)
T 3u62_A          156 SLDQLDEVVKKAKSLFNTTSVGMKGEELPVSDDSLKNLSLVYDVIYF--D----------TPLV-----VK-ARKLGVKH  217 (253)
T ss_dssp             EGGGHHHHHHTCSEEEECSSTTTTSCCCSCCHHHHTTCSEEEECSSS--C----------CHHH-----HH-HHHHTCSE
T ss_pred             CHHHHHhhhcCCCEEEECCCCCCCCCCCCCCHHHhCcCCEEEEeeCC--C----------cHHH-----HH-HHHCCCcE
Confidence              2344567899999999863   43  3566788999999999998  4          4565     55 44556520


Q ss_pred             cCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 024116          244 PVPGGVGPMTVAMLLSNTLDSAKRAYGFT  272 (272)
Q Consensus       244 pvpGGvGp~T~amL~~n~v~a~~~~~~~~  272 (272)
                      -+| |.+     ||+.|++.+++.|+|.+
T Consensus       218 ~~~-Gl~-----MLv~Qa~~af~~wtg~~  240 (253)
T 3u62_A          218 IIK-GNL-----MFYYQAMENLKIWGIYD  240 (253)
T ss_dssp             EEC-THH-----HHHHHHHHHHHHTTCCC
T ss_pred             EEC-CHH-----HHHHHHHHHHHHHhCCC
Confidence            245 555     99999999999999964

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=99.76  E-value=5.1e-19  Score=173.08  Aligned_cols=207  Identities=18%  Similarity=0.229  Sum_probs=148.6

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-ccccCcccc-cc--
Q 024116           27 RNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EKDVDGFHP-LN--  102 (272)
Q Consensus        27 ~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~KDvdg~~~-~n--  102 (272)
                      ..|+.+|+++|+++.|..|+.+    ++.+.++.+.. +++.|++|++|+|.  ...++++.+++ ++.+.+++. +|  
T Consensus       251 ~~hn~~f~~~gl~~~Y~~~~~~----~l~~~~~~~~~-~~~~G~nVTiP~K~--~i~~~ld~~~~~A~~iGAvNti~~~~  323 (523)
T 2o7s_A          251 IVHNQAFKSVDFNGVYVHLLVD----NLVSFLQAYSS-SDFAGFSCTIPHKE--AALQCCDEVDPLAKSIGAVNTILRRK  323 (523)
T ss_dssp             HHHHHHHHHTTCSEEEEEEECS----CHHHHHHHTCS-TTEEEEEECTTCHH--HHHHHCSEECHHHHHHTCCSEEEECT
T ss_pred             HHHHHHHHHcCCCcEEEeEEcc----hHHHHHHHHhc-CCCCEEEECCCCHH--HHHHHhcccCHHHHHhCCCeEEEEec
Confidence            4799999999999999999762    57777777765 57999999999996  44677778888 888888743 34  


Q ss_pred             -ccccccCCCCCccccCCHHHHHHHHHHh-------------CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          103 -IGNLAMRGREPLFIPCTPKGCIELLIRS-------------GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       103 -~g~l~~~~~~~~~~p~Ta~g~~~~l~~~-------------~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                       .|++. |+++++      .|++..++..             ..+++||+++|+|+||+ |++++..|+++|++|++++|
T Consensus       324 ~~gk~~-g~nTD~------~G~~~~l~~~~~~~~~~~~~~~~~~~l~~k~vlV~GaGGi-g~aia~~L~~~G~~V~i~~R  395 (523)
T 2o7s_A          324 SDGKLL-GYNTDC------IGSISAIEDGLRSSGDPSSVPSSSSPLASKTVVVIGAGGA-GKALAYGAKEKGAKVVIANR  395 (523)
T ss_dssp             TTCCEE-EECCHH------HHHHHHHHHHC-------------------CEEEECCSHH-HHHHHHHHHHHCC-CEEEES
T ss_pred             CCCeEE-EEcCCH------HHHHHHHHHhhhhccccccccccccccCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEEC
Confidence             35554 555554      8999888764             13678999999999986 99999999999999999998


Q ss_pred             CCCC-----------------Hhh-hcCCCcEEEEecCC---Cc----cccCCCcCCCcEEEEeeeCCCCCCCCCCCCCC
Q 024116          169 LTKN-----------------PEQ-ITSEADIVIAAAGV---AN----LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYG  223 (272)
Q Consensus       169 ~t~~-----------------l~~-~l~~ADIVIsa~g~---p~----~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~  223 (272)
                      +...                 +.+ .....|++|+++|.   |.    .+....+.+...++|+.+.|.+          
T Consensus       396 ~~~~a~~la~~~~~~~~~~~dl~~~~~~~~DilVN~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~~----------  465 (523)
T 2o7s_A          396 TYERALELAEAIGGKALSLTDLDNYHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRI----------  465 (523)
T ss_dssp             SHHHHHHHHHHTTC-CEETTTTTTC--CCSEEEEECSSTTCTTCTTCCSSCTTTGGGEEEEEECCCSSSS----------
T ss_pred             CHHHHHHHHHHcCCceeeHHHhhhccccCceEEEECCCCCCCCCCCCCCCChHHcCcCcEEEEEeeCCcc----------
Confidence            7321                 111 12347999999984   21    2444455666789999888754          


Q ss_pred             ceEecccchhhhhhhceEeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          224 YRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       224 ~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                      ++++     +. ++..++.  +-+|.+     ||++|.+.+++.|+|.
T Consensus       466 T~ll-----~~-a~~~G~~--~i~Gl~-----mlv~Qa~~~f~lwtg~  500 (523)
T 2o7s_A          466 TRLL-----RE-AEESGAI--TVSGSE-----MFVRQAYEQFEIFTGL  500 (523)
T ss_dssp             CHHH-----HH-HHTTTCE--EECHHH-----HHHHHHHHHHHHHHSS
T ss_pred             CHHH-----HH-HHHCCCE--EECcHH-----HHHHHHHHHHHHHhCC
Confidence            4454     33 3345653  455666     9999999999999985

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=99.64  E-value=8.3e-17  Score=154.27  Aligned_cols=163  Identities=17%  Similarity=0.291  Sum_probs=127.0

Q ss_pred             HHHHH--HHHc-CCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEE---cCCCCCCCCHHHHHhcCCcccccCcc-cc
Q 024116           28 NKIKA--CEEV-GIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILV---QLPLPQHLDEGKILDAVSLEKDVDGF-HP  100 (272)
Q Consensus        28 ~~~~~--~~~~-Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~v---q~Plp~~~~~~~i~~~i~p~KDvdg~-~~  100 (272)
                      .++++  |+++ ||++.|+.|+.+ +.++|.+.++.+.  +++.|++|   +.|++.     ++++.++.     ++ ++
T Consensus        90 mh~ka~lf~~~gGid~~yi~ldv~-d~de~~~~v~~l~--~~f~GinvED~T~P~k~-----~il~~l~~-----avNt~  156 (439)
T 2dvm_A           90 MEGKALLFKRFGGVDAFPIMIKEQ-EPNKFIDIVKAIA--PTFGGINLEDIASPKCF-----YILERLRE-----ELDIP  156 (439)
T ss_dssp             HHHHHHHHHHHHCCEEEEEECSCC-SHHHHHHHHHHTG--GGCSEEEECSCCTTHHH-----HHHHHHHH-----HCSSC
T ss_pred             HHHHHHHHHHhCCCCCeeeeeecC-CHHHHHHHHHHhC--ccCcEEEEEeCCCchHH-----HHHHHHHH-----hcCEE
Confidence            46655  9999 899999999652 5789999999997  68999999   999984     56666643     22 23


Q ss_pred             cc--ccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC---EEEEEe----CC--
Q 024116          101 LN--IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVH----AL--  169 (272)
Q Consensus       101 ~n--~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga---~V~v~~----~~--  169 (272)
                      ++  -++.. |       +++..|++..|+..+.++++++++|+|+|++ |++++.+|...|+   +|++++    |+  
T Consensus       157 vf~dD~~gt-g-------ntd~aG~~~AL~~~g~~l~~~rvlvlGAGgA-g~aia~~L~~~G~~~~~I~vvd~~~~R~G~  227 (439)
T 2dvm_A          157 VFHDDQQGT-A-------AVVLAGLLNALKVVGKKISEITLALFGAGAA-GFATLRILTEAGVKPENVRVVELVNGKPRI  227 (439)
T ss_dssp             EEEHHHHHH-H-------HHHHHHHHHHHHHHTCCTTTCCEEEECCSHH-HHHHHHHHHHTTCCGGGEEEEEEETTEEEE
T ss_pred             EEeCCCcEE-e-------ehHHHHHHHHHHHhCCCccCCEEEEECccHH-HHHHHHHHHHcCCCcCeEEEEEccCCCcCc
Confidence            32  12222 2       4445899999999999999999999999998 9999999999998   799999    76  


Q ss_pred             --C-CC-----------------------HhhhcCCCcEEEEecCCC-ccccCCC---cCCCcEEEEeeeCCCC
Q 024116          170 --T-KN-----------------------PEQITSEADIVIAAAGVA-NLVRGSW---LKPGAVVLDVGTCPVD  213 (272)
Q Consensus       170 --t-~~-----------------------l~~~l~~ADIVIsa~g~p-~~i~~~~---vk~g~vviDig~~~~~  213 (272)
                        . ++                       +.+.++++|++|++|+.| +.+++++   +.++.+|+|+ ++|.+
T Consensus       228 ~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~~aDVlInaT~~~~G~~~~e~v~~m~~~~iVfDL-ynP~~  300 (439)
T 2dvm_A          228 LTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDADVLISFTRPGPGVIKPQWIEKMNEDAIVFPL-ANPVP  300 (439)
T ss_dssp             CCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHHTTCSEEEECSCCCSSSSCHHHHTTSCTTCEEEEC-CSSSC
T ss_pred             cccccchhHHHHHHHHHhhccccccccccHHHHhccCCEEEEcCCCccCCCChHHHHhcCCCCEEEEC-CCCCC
Confidence              1 12                       335567899999999985 6766554   4578899999 89865

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=99.41  E-value=5.3e-14  Score=126.99  Aligned_cols=209  Identities=17%  Similarity=0.080  Sum_probs=144.1

Q ss_pred             HcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCccccccccccccCCCCCc
Q 024116           35 EVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPL  114 (272)
Q Consensus        35 ~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~  114 (272)
                      +.|++..|..++  ++.++|.+.++.+--.....|++++.|+..+.+...+.+.++..+. .-+.++|.-.+..   ..+
T Consensus        24 ~~g~~~~y~~~~--v~~~~~~~~~~~~~~~~~~~g~~~t~~~~~G~~~~~~~~~~~~~~~-~~~gavnt~~~~~---~~G   97 (287)
T 1lu9_A           24 DGGADHITGYGN--VTPDNVGAYVDGTIYTRGGKEKQSTAIFVGGGDMAAGERVFEAVKK-RFFGPFRVSCMLD---SNG   97 (287)
T ss_dssp             HTTCSEEEEESS--CCTTTHHHHHHHHHSSCCGGGGGGEEEEEECSCHHHHHHHHHHHHH-HCBTTBCCEEEEC---STT
T ss_pred             ccCcceEeccCC--cCHHHHHhhhcceEEecCccccccceEEEccchHHHHHHHHHHHHH-hcCCCeEEEEecC---CCc
Confidence            699999999995  4778899999997444568999999998777777666555544331 1124555443221   122


Q ss_pred             cccCCHHHHHHHHHHh-CCCCccceEEEEc-CCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------
Q 024116          115 FIPCTPKGCIELLIRS-GVEIMGKNAVVIG-RSNIVGLPTSLLLQRHHATVSIVHALTK---------------------  171 (272)
Q Consensus       115 ~~p~Ta~g~~~~l~~~-~~~l~gk~v~ViG-~g~~vG~~la~~L~~~ga~V~v~~~~t~---------------------  171 (272)
                       .+++..|+++.|++. +.+++||+++|+| +|+ +|++++..|+++|++|++++|+..                     
T Consensus        98 -~nTd~~g~~~~l~~~~~~~l~gk~vlVtGaaGG-iG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D  175 (287)
T 1lu9_A           98 -SNTTAAAGVALVVKAAGGSVKGKKAVVLAGTGP-VGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAE  175 (287)
T ss_dssp             -HHHHHHHHHHHHHHHTTSCCTTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred             -CCchHHHHHHHHHHhhccCCCCCEEEEECCCcH-HHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEec
Confidence             256779999999988 8899999999999 666 499999999999999999988621                     


Q ss_pred             -----CHhhhcCCCcEEEEecCCC---ccc-cCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhh------
Q 024116          172 -----NPEQITSEADIVIAAAGVA---NLV-RGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAM------  236 (272)
Q Consensus       172 -----~l~~~l~~ADIVIsa~g~p---~~i-~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~------  236 (272)
                           ++.+.++++|+||+++|..   ..+ +.+.+.+...++|+-+.+...    .+  ++.++     +. +      
T Consensus       176 ~~~~~~~~~~~~~~DvlVn~ag~g~~~~~~~~~~~~~~~~~~~dvn~~~~~~----i~--~t~ll-----~~-a~~~~~~  243 (287)
T 1lu9_A          176 TADDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPLG----IG--GIDAT-----DK-GKEYGGK  243 (287)
T ss_dssp             CCSHHHHHHHTTTCSEEEECCCTTCCSBCHHHHTTCTTCCEEEECCCSSSCS----BT--TSCTT-----CE-EEEETTE
T ss_pred             CCCHHHHHHHHHhCCEEEECCCccccCCChhHcCchHHHHHHHHhhhhhhHH----hh--cchHH-----hh-ccccCCC
Confidence                 1234567789999999742   112 334456678899998876420    00  02222     22 1      


Q ss_pred             hhceEeccCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024116          237 RLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       237 ~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~~~  271 (272)
                      +..++  .+.+|.+     ||++|...+ +.|++-
T Consensus       244 ~~~G~--~~v~gl~-----ml~~qa~~a-~~~~~~  270 (287)
T 1lu9_A          244 RAFGA--LGIGGLK-----LKLHRACIA-KLFESS  270 (287)
T ss_dssp             EEECH--HHHHHHH-----HHHHHHHHH-HHTSCS
T ss_pred             ccccc--eeECchH-----HHHHHHHHH-HHhhCC
Confidence            22333  2445666     999999888 788763

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.16  E-value=1.3e-10  Score=105.39  Aligned_cols=120  Identities=20%  Similarity=0.319  Sum_probs=92.6

Q ss_pred             HHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------CCHhhhcCCCcEEEEecCCCc
Q 024116          128 IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------KNPEQITSEADIVIAAAGVAN  191 (272)
Q Consensus       128 ~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t----------------~~l~~~l~~ADIVIsa~g~p~  191 (272)
                      +..+.++.|+++.|||.|.+ |+.+++.|...|++|++++++.                .++.+.+++||+||++++. +
T Consensus       149 ~~~~~~l~g~~v~IiG~G~i-G~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-~  226 (300)
T 2rir_A          149 QHTDYTIHGSQVAVLGLGRT-GMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS-M  226 (300)
T ss_dssp             HTCSSCSTTSEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-C
T ss_pred             HhcCCCCCCCEEEEEcccHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-h
Confidence            34578899999999999886 9999999999999999999763                2456778999999999986 4


Q ss_pred             cccC---CCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEe---cc-CCCcccHHHHHHHHHHHHHH
Q 024116          192 LVRG---SWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVI---TP-VPGGVGPMTVAMLLSNTLDS  264 (272)
Q Consensus       192 ~i~~---~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~---tp-vpGGvGp~T~amL~~n~v~a  264 (272)
                      +++.   +.+++++++||++..+..                ++++. +.+.+..   .| +||+++|.+.+.|+.|.+..
T Consensus       227 ~i~~~~~~~mk~g~~lin~a~g~~~----------------~~~~~-a~~~G~~~i~~pg~~g~v~~a~a~~l~~~~~~~  289 (300)
T 2rir_A          227 ILNQTVLSSMTPKTLILDLASRPGG----------------TDFKY-AEKQGIKALLAPGLPGIVAPKTAGQILANVLSK  289 (300)
T ss_dssp             CBCHHHHTTSCTTCEEEECSSTTCS----------------BCHHH-HHHHTCEEEECCCHHHHHCHHHHHHHHHHHHHH
T ss_pred             hhCHHHHHhCCCCCEEEEEeCCCCC----------------cCHHH-HHHCCCEEEECCCCCCcHHHHHHHHHHHHHHHH
Confidence            5544   356899999999976532                23333 2333322   25 88999999999999998876


Q ss_pred             HH
Q 024116          265 AK  266 (272)
Q Consensus       265 ~~  266 (272)
                      +-
T Consensus       290 ~l  291 (300)
T 2rir_A          290 LL  291 (300)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=99.07  E-value=2.7e-10  Score=92.11  Aligned_cols=90  Identities=17%  Similarity=0.351  Sum_probs=75.5

Q ss_pred             CCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-----------------CCHhhhcCCC
Q 024116          118 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------------KNPEQITSEA  180 (272)
Q Consensus       118 ~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-----------------~~l~~~l~~A  180 (272)
                      +.+...++.++...    |++++|||+|.+ |+.++..|...|++|++++|+.                 .++.+.++++
T Consensus         7 sv~~~a~~~~~~~~----~~~v~iiG~G~i-G~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   81 (144)
T 3oj0_A            7 SIPSIVYDIVRKNG----GNKILLVGNGML-ASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNN   81 (144)
T ss_dssp             SHHHHHHHHHHHHC----CCEEEEECCSHH-HHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTC
T ss_pred             cHHHHHHHHHHhcc----CCEEEEECCCHH-HHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCC
Confidence            45566777777664    999999999885 9999999999999999998762                 3566778899


Q ss_pred             cEEEEecCCCcc-ccCCCcCCCcEEEEeeeCCC
Q 024116          181 DIVIAAAGVANL-VRGSWLKPGAVVLDVGTCPV  212 (272)
Q Consensus       181 DIVIsa~g~p~~-i~~~~vk~g~vviDig~~~~  212 (272)
                      |+||++||.++. ++.+++++|.+++|++.++.
T Consensus        82 Divi~at~~~~~~~~~~~l~~g~~vid~~~p~~  114 (144)
T 3oj0_A           82 DVIITATSSKTPIVEERSLMPGKLFIDLGNPPN  114 (144)
T ss_dssp             SEEEECSCCSSCSBCGGGCCTTCEEEECCSSCS
T ss_pred             CEEEEeCCCCCcEeeHHHcCCCCEEEEccCCcc
Confidence            999999998765 67899999999999998764

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.06  E-value=5.8e-10  Score=100.94  Aligned_cols=129  Identities=19%  Similarity=0.279  Sum_probs=96.3

Q ss_pred             CCHHHHHH-HHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------CCHhhhcCCC
Q 024116          118 CTPKGCIE-LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------KNPEQITSEA  180 (272)
Q Consensus       118 ~Ta~g~~~-~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t----------------~~l~~~l~~A  180 (272)
                      ++++.++. +|...+.++.||++.|||.|.+ |+.+++.|...|++|++++++.                .++.+.++++
T Consensus       136 svae~a~~~~l~~~~~~l~g~~v~IiG~G~i-G~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~a  214 (293)
T 3d4o_A          136 PTAEGTIMMAIQHTDFTIHGANVAVLGLGRV-GMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDV  214 (293)
T ss_dssp             HHHHHHHHHHHHHCSSCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTC
T ss_pred             hHHHHHHHHHHHhcCCCCCCCEEEEEeeCHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCC
Confidence            44555555 4456678999999999999986 9999999999999999999863                1355678999


Q ss_pred             cEEEEecCCCccccCC---CcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhce--E--eccCCCcccHHH
Q 024116          181 DIVIAAAGVANLVRGS---WLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS--V--ITPVPGGVGPMT  253 (272)
Q Consensus       181 DIVIsa~g~p~~i~~~---~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~--~--~tpvpGGvGp~T  253 (272)
                      |+||.+++. +++..+   .++++.++||++..+.                +++++. ++..+  +  +.-.|+.++|.|
T Consensus       215 DvVi~~~p~-~~i~~~~l~~mk~~~~lin~ar~~~----------------~~~~~~-a~~~Gv~~~~~~~l~~~v~p~~  276 (293)
T 3d4o_A          215 DVCINTIPA-LVVTANVLAEMPSHTFVIDLASKPG----------------GTDFRY-AEKRGIKALLVPGLPGIVAPKT  276 (293)
T ss_dssp             SEEEECCSS-CCBCHHHHHHSCTTCEEEECSSTTC----------------SBCHHH-HHHHTCEEEECCCHHHHHCHHH
T ss_pred             CEEEECCCh-HHhCHHHHHhcCCCCEEEEecCCCC----------------CCCHHH-HHHCCCEEEECCCCCcccCHHH
Confidence            999999974 455443   4589999999997653                234433 23222  2  244677888999


Q ss_pred             HHHHHHHHHHHH
Q 024116          254 VAMLLSNTLDSA  265 (272)
Q Consensus       254 ~amL~~n~v~a~  265 (272)
                      .+.++.|.+..+
T Consensus       277 a~~~~~~~~~~~  288 (293)
T 3d4o_A          277 AGRILADVLVKL  288 (293)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988655

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.93  E-value=2.7e-09  Score=100.50  Aligned_cols=164  Identities=19%  Similarity=0.273  Sum_probs=118.0

Q ss_pred             HHHHHHHHH-cCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHH---HHhcCCcccccCcccccc
Q 024116           27 RNKIKACEE-VGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK---ILDAVSLEKDVDGFHPLN  102 (272)
Q Consensus        27 ~~~~~~~~~-~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~---i~~~i~p~KDvdg~~~~n  102 (272)
                      ..|...++. .||++.-+++... +.+|+.+.++.+-  |.+.+|++     +.+...+   +++.+...-|+--||.-.
T Consensus        97 egK~~Lf~~~agid~~pi~ldv~-~~dE~v~~vk~~~--p~f~~i~l-----ED~~~p~af~il~r~r~~~~Ipvf~DDi  168 (388)
T 1vl6_A           97 EGKAFLFKAFADIDAFPICLSES-EEEKIISIVKSLE--PSFGGINL-----EDIGAPKCFRILQRLSEEMNIPVFHDDQ  168 (388)
T ss_dssp             HHHHHHHHHHHCCEEEEEECSCC-CHHHHHHHHHHTG--GGCSEEEE-----CSCCTTHHHHHHHHHHHHCSSCEEEHHH
T ss_pred             hCHHHHHHhccCCceEeEEeCCC-CHHHHHHHHHHcC--CcceEeCH-----hhcCCHHHHHHHHHhhhhcCcceecccc
Confidence            456666654 6899988888765 5889999999887  56888876     3222222   222222222233222111


Q ss_pred             ccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC----C-------
Q 024116          103 IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL----T-------  170 (272)
Q Consensus       103 ~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~----t-------  170 (272)
                      .|.          .-.+..|++..++-.+.++++.+|+|+|+|.+ |..++++|...|+ +|++|+|+    .       
T Consensus       169 qGT----------asV~lAal~~A~~i~g~~l~~~kVVv~GAGaA-G~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L  237 (388)
T 1vl6_A          169 QGT----------AVVVSAAFLNALKLTEKKIEEVKVVVNGIGAA-GYNIVKFLLDLGVKNVVAVDRKGILNENDPETCL  237 (388)
T ss_dssp             HHH----------HHHHHHHHHHHHHHHTCCTTTCEEEEECCSHH-HHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCS
T ss_pred             ccH----------HHHHHHHHHHHHHHhCCCCCCcEEEEECCCHH-HHHHHHHHHhCCCCeEEEEECCCcccCCCccccc
Confidence            221          12233566777777888999999999999886 9999999999998 89999987    1       


Q ss_pred             -----------------CCHhhhcCCCcEEEEecCCCccccCCCcC---CCcEEEEeeeC
Q 024116          171 -----------------KNPEQITSEADIVIAAAGVANLVRGSWLK---PGAVVLDVGTC  210 (272)
Q Consensus       171 -----------------~~l~~~l~~ADIVIsa~g~p~~i~~~~vk---~g~vviDig~~  210 (272)
                                       .+|.+.++.||++|.+++ |++++++|++   ++.+|+|++-+
T Consensus       238 ~~~k~~~A~~~~~~~~~~~L~eav~~ADVlIG~Sa-p~l~t~emVk~Ma~~pIIfalSNP  296 (388)
T 1vl6_A          238 NEYHLEIARITNPERLSGDLETALEGADFFIGVSR-GNILKPEWIKKMSRKPVIFALANP  296 (388)
T ss_dssp             SHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECSC-SSCSCHHHHTTSCSSCEEEECCSS
T ss_pred             CHHHHHHHHhhhccCchhhHHHHHccCCEEEEeCC-CCccCHHHHHhcCCCCEEEEcCCC
Confidence                             247899999999999988 8999999885   47799999843

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=98.89  E-value=4.2e-09  Score=100.62  Aligned_cols=94  Identities=21%  Similarity=0.313  Sum_probs=78.0

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEE
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIV  183 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIV  183 (272)
                      +|+...+-.+++..+..+.||+|+|+|.|.+ |+++++.|...|++|++++++.             .++.+.+++||+|
T Consensus       192 Gt~~slldgi~ratg~~L~GktVgIiG~G~I-G~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~ADVV  270 (436)
T 3h9u_A          192 GCRESLVDGIKRATDVMIAGKTACVCGYGDV-GKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHIF  270 (436)
T ss_dssp             HHHHHHHHHHHHHHCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEE
T ss_pred             cchHHHHHHHHHhcCCcccCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHHhhCCEE
Confidence            3433333334456789999999999999985 9999999999999999998752             3678999999999


Q ss_pred             EEecCCCccccCCCc---CCCcEEEEeeeCC
Q 024116          184 IAAAGVANLVRGSWL---KPGAVVLDVGTCP  211 (272)
Q Consensus       184 Isa~g~p~~i~~~~v---k~g~vviDig~~~  211 (272)
                      |++++..++++.+++   |+|+++||+|...
T Consensus       271 ilt~gt~~iI~~e~l~~MK~gAIVINvgRg~  301 (436)
T 3h9u_A          271 VTTTGNDDIITSEHFPRMRDDAIVCNIGHFD  301 (436)
T ss_dssp             EECSSCSCSBCTTTGGGCCTTEEEEECSSSG
T ss_pred             EECCCCcCccCHHHHhhcCCCcEEEEeCCCC
Confidence            999998889988876   8999999999554

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.85  E-value=6.6e-09  Score=97.83  Aligned_cols=122  Identities=20%  Similarity=0.210  Sum_probs=85.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------------------------CHh
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------------------------NPE  174 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~---------------------------------------~l~  174 (272)
                      +.+++|+|+|.|.+ |..+++.|...|++|++++++..                                       ++.
T Consensus       182 v~~~kV~ViG~G~i-G~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          182 VKPASALVLGVGVA-GLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             ECCCEEEEESCSHH-HHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHH
T ss_pred             cCCCEEEEECchHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHH
Confidence            48999999999875 99999999999999999987631                                       245


Q ss_pred             hhcCCCcEEEEecCC-----CccccCCCc---CCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhh-hceEeccC
Q 024116          175 QITSEADIVIAAAGV-----ANLVRGSWL---KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMR-LASVITPV  245 (272)
Q Consensus       175 ~~l~~ADIVIsa~g~-----p~~i~~~~v---k~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~-~~~~~tpv  245 (272)
                      +.+++|||||+++..     |.+++++|+   |+|++|||++..+-- ....+.  .+..     |.. .. ..-.++-.
T Consensus       261 e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG-~~e~t~--~~~~-----~~~-~gV~~~~v~nl  331 (381)
T 3p2y_A          261 DAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGG-NCELTE--PGRT-----IVH-HGVTITSPLNL  331 (381)
T ss_dssp             HHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTC-SBTTCC--TTCE-----EEE-TTEEEECCSCT
T ss_pred             HHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCC-cccccc--CCCe-----EEE-CCEEEEeeCCC
Confidence            778999999998743     456888876   789999999987521 000000  0110     100 00 12234567


Q ss_pred             CCcccHHHHHHHHHHHHHHHH
Q 024116          246 PGGVGPMTVAMLLSNTLDSAK  266 (272)
Q Consensus       246 pGGvGp~T~amL~~n~v~a~~  266 (272)
                      ||-+ |.|.+.++.|.+..+-
T Consensus       332 P~~v-p~tAS~~~s~~l~~~l  351 (381)
T 3p2y_A          332 PATM-PEHASELYAKNVTALL  351 (381)
T ss_dssp             GGGS-HHHHHHHHHHHHHHHH
T ss_pred             chhh-HHHHHHHHHHHHHHHH
Confidence            8888 9999988888776554

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=98.84  E-value=5.7e-09  Score=99.95  Aligned_cols=92  Identities=22%  Similarity=0.287  Sum_probs=77.5

Q ss_pred             HHHHHHHH-HHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEEEE
Q 024116          120 PKGCIELL-IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIA  185 (272)
Q Consensus       120 a~g~~~~l-~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIVIs  185 (272)
                      .+.++..+ +..+..+.||+++|+|.|.+ |+.+++.|...|++|++++++.             .++.+.+++|||||+
T Consensus       230 ~eslvdgI~Ratg~~L~GKTVgVIG~G~I-Gr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv~LeElL~~ADIVv~  308 (464)
T 3n58_A          230 KESLVDGIRRGTDVMMAGKVAVVCGYGDV-GKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAASTADIVVT  308 (464)
T ss_dssp             HHHHHHHHHHHHCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECCHHHHGGGCSEEEE
T ss_pred             hHHHHHHHHHhcCCcccCCEEEEECcCHH-HHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceeccHHHHHhhCCEEEE
Confidence            34444443 45789999999999999985 9999999999999999997642             367889999999999


Q ss_pred             ecCCCccccCCCc---CCCcEEEEeeeCCC
Q 024116          186 AAGVANLVRGSWL---KPGAVVLDVGTCPV  212 (272)
Q Consensus       186 a~g~p~~i~~~~v---k~g~vviDig~~~~  212 (272)
                      ++|.+++|+.++|   |+|+++|++|....
T Consensus       309 atgt~~lI~~e~l~~MK~GAILINvGRgdv  338 (464)
T 3n58_A          309 TTGNKDVITIDHMRKMKDMCIVGNIGHFDN  338 (464)
T ss_dssp             CCSSSSSBCHHHHHHSCTTEEEEECSSSTT
T ss_pred             CCCCccccCHHHHhcCCCCeEEEEcCCCCc
Confidence            9999999987766   99999999997654

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.81  E-value=9.6e-09  Score=98.00  Aligned_cols=94  Identities=21%  Similarity=0.306  Sum_probs=78.5

Q ss_pred             CHHHHHHHHH-HhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEEE
Q 024116          119 TPKGCIELLI-RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVI  184 (272)
Q Consensus       119 Ta~g~~~~l~-~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIVI  184 (272)
                      |...++..+. ..+..+.||+++|+|+|.+ |+.+++.|...|++|++++++.             .++.+.+++||+||
T Consensus       202 t~~s~~~gi~rat~~~L~GktV~ViG~G~I-Gk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leeal~~ADIVi  280 (435)
T 3gvp_A          202 CRESILDGLKRTTDMMFGGKQVVVCGYGEV-GKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVI  280 (435)
T ss_dssp             HHHHHHHHHHHHHCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEE
T ss_pred             hHHHHHHHHHHhhCceecCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHHHHHhcCCEEE
Confidence            3445555444 4678899999999999985 9999999999999999998652             36788999999999


Q ss_pred             EecCCCccccCCCc---CCCcEEEEeeeCCCC
Q 024116          185 AAAGVANLVRGSWL---KPGAVVLDVGTCPVD  213 (272)
Q Consensus       185 sa~g~p~~i~~~~v---k~g~vviDig~~~~~  213 (272)
                      +++|.+++++.++|   |+|+++|++|....+
T Consensus       281 ~atgt~~lI~~e~l~~MK~gailINvgrg~~E  312 (435)
T 3gvp_A          281 TCTGNKNVVTREHLDRMKNSCIVCNMGHSNTE  312 (435)
T ss_dssp             ECSSCSCSBCHHHHHHSCTTEEEEECSSTTTT
T ss_pred             ECCCCcccCCHHHHHhcCCCcEEEEecCCCcc
Confidence            99999999987765   999999999987654

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.75  E-value=3e-08  Score=94.10  Aligned_cols=124  Identities=22%  Similarity=0.218  Sum_probs=84.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------------------------------
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------------------------  171 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-----------------------------------------  171 (272)
                      .+.+.+|+|+|.|.+ |..++++|...|++|++++++..                                         
T Consensus       187 ~v~~~kV~ViG~G~i-G~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~  265 (405)
T 4dio_A          187 TVPAAKIFVMGAGVA-GLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQ  265 (405)
T ss_dssp             EECCCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHH
T ss_pred             CcCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhh
Confidence            457899999999875 99999999999999999987531                                         


Q ss_pred             --CHhhhcCCCcEEEEecC-----CCccccCCCc---CCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceE
Q 024116          172 --NPEQITSEADIVIAAAG-----VANLVRGSWL---KPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASV  241 (272)
Q Consensus       172 --~l~~~l~~ADIVIsa~g-----~p~~i~~~~v---k~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~  241 (272)
                        ++.+.+++|||||+++.     .|.+++++|+   |+|++|||++..+-- ..+.+.+ +..+.    ...  -..-.
T Consensus       266 ~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG-~~e~t~~-~~~~~----~~G--V~~~g  337 (405)
T 4dio_A          266 AALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGG-NIEGAEA-GKVTE----VGG--VRIVG  337 (405)
T ss_dssp             HHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTC-SBTTCCT-TEEEE----ETT--EEEEE
T ss_pred             HhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCC-CccccCC-CCeEE----ECC--EEEEE
Confidence              24556789999999864     3457888876   789999999986521 0000000 01110    001  01223


Q ss_pred             eccCCCcccHHHHHHHHHHHHHHHH
Q 024116          242 ITPVPGGVGPMTVAMLLSNTLDSAK  266 (272)
Q Consensus       242 ~tpvpGGvGp~T~amL~~n~v~a~~  266 (272)
                      ++-.||-+ |.|+..++.|.+..+-
T Consensus       338 v~nlP~~v-p~tAS~~ls~~~~~~l  361 (405)
T 4dio_A          338 HLNVAGRI-AASASLLYAKNLVTFL  361 (405)
T ss_dssp             CSSGGGGG-HHHHHHHHHHHHHHHH
T ss_pred             eCCCCccC-HHHHHHHHHHHHHHHH
Confidence            44468777 8999888887765543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.69  E-value=6.2e-09  Score=96.99  Aligned_cols=159  Identities=18%  Similarity=0.161  Sum_probs=102.7

Q ss_pred             HHHHHHHcCC-eEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEE-cCCCCCCCCHHHHHhcCCc-ccccCcc-cccccc
Q 024116           29 KIKACEEVGI-KSIVTEFADGCTEDEVLNALSNYNQDSSINGILV-QLPLPQHLDEGKILDAVSL-EKDVDGF-HPLNIG  104 (272)
Q Consensus        29 ~~~~~~~~Gi-~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~v-q~Plp~~~~~~~i~~~i~p-~KDvdg~-~~~n~g  104 (272)
                      ++..+.+.|. .+.|..+..  + .++.+.+.+.    ++.|+++ ++|++.+  ...+++.+++ +.-+-.+ ...|+.
T Consensus        79 ~~~~~~~~g~~~~~y~~~~~--~-~~l~~~l~~~----gi~~~~~etvp~k~~--~~~~l~~~s~~Ag~~a~~~gA~nt~  149 (361)
T 1pjc_A           79 AEYDLMQKDQLLFTYLHLAA--A-RELTEQLMRV----GLTAIAYETVELPNR--SLPLLTPMSIIAGRLSVQFGARFLE  149 (361)
T ss_dssp             GGGGGCCTTCEEEECCCGGG--C-HHHHHHHHHH----TCEEEEGGGCCCTTS--CCTTTHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHhhcCCCEEEEEecccc--C-HHHHHHHHHc----CCeEEEEeeeEcccC--CccccCcchHHHHHHHHHHHHHHHh
Confidence            3445556785 788877765  3 3576666665    5889998 9998752  1233343333 2211000 334544


Q ss_pred             ccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------
Q 024116          105 NLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------  171 (272)
Q Consensus       105 ~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------  171 (272)
                      +...|  + +|.          +... ..+++++|+|+|+|++ |+.+++.|...|++|++++++..             
T Consensus       150 ~~~~g--~-G~~----------l~~l-~~l~~~~VlViGaGgv-G~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~  214 (361)
T 1pjc_A          150 RQQGG--R-GVL----------LGGV-PGVKPGKVVILGGGVV-GTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRV  214 (361)
T ss_dssp             GGGTS--C-CCC----------TTCB-TTBCCCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGS
T ss_pred             hccCC--C-cee----------ccCC-CCCCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCcee
Confidence            43322  1 231          0000 1367899999999885 99999999999999999988631             


Q ss_pred             --------CHhhhcCCCcEEEEecCCCc-----ccc---CCCcCCCcEEEEeeeCC
Q 024116          172 --------NPEQITSEADIVIAAAGVAN-----LVR---GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       172 --------~l~~~l~~ADIVIsa~g~p~-----~i~---~~~vk~g~vviDig~~~  211 (272)
                              ++.+.++.+|+||+++|.|.     ++.   -+.++++.+++|+++++
T Consensus       215 ~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~~~  270 (361)
T 1pjc_A          215 ELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQ  270 (361)
T ss_dssp             EEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTT
T ss_pred             EeeeCCHHHHHHHHcCCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEecCC
Confidence                    22345678999999998654     233   24578899999999876

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=98.64  E-value=6.2e-08  Score=91.39  Aligned_cols=165  Identities=16%  Similarity=0.269  Sum_probs=118.4

Q ss_pred             HHHHHHHHH-cCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCccc---ccCcccccc
Q 024116           27 RNKIKACEE-VGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEK---DVDGFHPLN  102 (272)
Q Consensus        27 ~~~~~~~~~-~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~K---Dvdg~~~~n  102 (272)
                      ..|...++. .||++.-+++... +.+|+.+.++.+-  |.+.||++.     .+...+.++.+.-.+   |+--||.--
T Consensus        93 eGK~~Lf~~~agid~~pi~Ldv~-~~dEfv~~v~~~~--p~F~~I~lE-----D~~~p~~f~il~~~r~~~~ipvf~DDi  164 (398)
T 2a9f_A           93 EGKAALFKAFAGVDAIPIVLDTK-DTEEIISIVKALA--PTFGGINLE-----DISAPRCFEIEQRLIKECHIPVFHDDQ  164 (398)
T ss_dssp             HHHHHHHHHHSSCEEEEEECCCC-CHHHHHHHHHHHG--GGCSEEEEC-----SCCTTHHHHHHHHHHHHCSSCEEEHHH
T ss_pred             hCHHHHHHhccCCceeeeEeCCC-CHHHHHHHHHHcC--CceeEeccc-----cCCChHHHHHHHHhhhcCCcceecchh
Confidence            456666664 6899988898765 5889999999887  678998873     332223333222212   222222111


Q ss_pred             ccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC--------C---
Q 024116          103 IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL--------T---  170 (272)
Q Consensus       103 ~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~--------t---  170 (272)
                      .|.          .-.+..|.+..++-.+..++.-+|+|+|+|-+ |..++.+|...|+ +|++|+++        .   
T Consensus       165 qGT----------a~V~lAall~al~l~g~~l~d~kVVi~GAGaA-G~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~  233 (398)
T 2a9f_A          165 HGT----------AIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSA-GLSITRKLLAAGATKVTVVDKFGIINEQEAAQLA  233 (398)
T ss_dssp             HHH----------HHHHHHHHHHHHHTTTCCTTSCEEEEECCSHH-HHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCC
T ss_pred             hhH----------HHHHHHHHHHHHHHhCCCCCccEEEEECCCHH-HHHHHHHHHHcCCCeEEEEECCCcccCCccccch
Confidence            111          12233567777888889999999999999886 9999999999998 99999875        1   


Q ss_pred             ----------------CCHhhhcCCCcEEEEecCCCccccCCCc---CCCcEEEEeeeCCC
Q 024116          171 ----------------KNPEQITSEADIVIAAAGVANLVRGSWL---KPGAVVLDVGTCPV  212 (272)
Q Consensus       171 ----------------~~l~~~l~~ADIVIsa~g~p~~i~~~~v---k~g~vviDig~~~~  212 (272)
                                      .+|.+.++.||++|-+.+ |+++++||+   +++.+|+++. ||.
T Consensus       234 ~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~Sa-pgl~T~EmVk~Ma~~pIIfals-NPt  292 (398)
T 2a9f_A          234 PHHLDIAKVTNREFKSGTLEDALEGADIFIGVSA-PGVLKAEWISKMAARPVIFAMA-NPI  292 (398)
T ss_dssp             C---CHHHHHSCTTCCCSCSHHHHTTCSEEECCS-TTCCCHHHHHTSCSSCEEEECC-SSS
T ss_pred             HHHHHHhhccCcccchhhHHHHhccCCEEEecCC-CCCCCHHHHHhhCCCCEEEECC-CCC
Confidence                            236788899999998876 999999997   5699999998 554

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=98.63  E-value=5.7e-08  Score=94.30  Aligned_cols=84  Identities=26%  Similarity=0.319  Sum_probs=72.7

Q ss_pred             HHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEEEEecCCCcccc
Q 024116          128 IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVANLVR  194 (272)
Q Consensus       128 ~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIVIsa~g~p~~i~  194 (272)
                      +..+.++.||+++|||.|.+ |+.+|+.|...|++|++++++.             .++.+.+++||+||++++.+++++
T Consensus       269 ~~~g~~L~GktVgIIG~G~I-G~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~~~l~ell~~aDiVi~~~~t~~lI~  347 (494)
T 3d64_A          269 RATDVMIAGKIAVVAGYGDV-GKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTATGNYHVIN  347 (494)
T ss_dssp             HHHCCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECSSSSCSBC
T ss_pred             hccccccCCCEEEEEccCHH-HHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEeCCHHHHHhcCCEEEECCCcccccC
Confidence            34677899999999999885 9999999999999999998763             257788999999999998888888


Q ss_pred             CCCc---CCCcEEEEeeeCCC
Q 024116          195 GSWL---KPGAVVLDVGTCPV  212 (272)
Q Consensus       195 ~~~v---k~g~vviDig~~~~  212 (272)
                      .+++   |+|+++||+|....
T Consensus       348 ~~~l~~MK~gAilINvgrg~v  368 (494)
T 3d64_A          348 HDHMKAMRHNAIVCNIGHFDS  368 (494)
T ss_dssp             HHHHHHCCTTEEEEECSSSSC
T ss_pred             HHHHhhCCCCcEEEEcCCCcc
Confidence            7654   89999999997654

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.60  E-value=2.9e-08  Score=93.80  Aligned_cols=140  Identities=12%  Similarity=0.116  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC-----------------CHhhhcCCCc
Q 024116          120 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK-----------------NPEQITSEAD  181 (272)
Q Consensus       120 a~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t~-----------------~l~~~l~~AD  181 (272)
                      +...++..+....++.|++|+|+|+|++ |+.+++.|...|+ +|++++|+..                 ++.+.++.+|
T Consensus       151 a~~av~~a~~~~~~l~g~~VlIiGaG~i-G~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aD  229 (404)
T 1gpj_A          151 GSAAVELAERELGSLHDKTVLVVGAGEM-GKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSD  229 (404)
T ss_dssp             HHHHHHHHHHHHSCCTTCEEEEESCCHH-HHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCS
T ss_pred             HHHHHHHHHHHhccccCCEEEEEChHHH-HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCC
Confidence            3444454442223679999999999886 9999999999998 9999998631                 3445667899


Q ss_pred             EEEEecCCCcc-ccCCCc---------CCCcEEEEeeeCCCCCCCCCC-CCCCceEecccch-hhhhhh---ceEeccCC
Q 024116          182 IVIAAAGVANL-VRGSWL---------KPGAVVLDVGTCPVDVSVDPS-CEYGYRLMGDVCY-EEAMRL---ASVITPVP  246 (272)
Q Consensus       182 IVIsa~g~p~~-i~~~~v---------k~g~vviDig~~~~~~~~~~~-~~~~~k~~Gdvd~-~~~~~~---~~~~tpvp  246 (272)
                      +||++||.+.. ++.+++         .++.+++|++.++..   ++. ..-.+-.+=|+|. ..+.+.   .+.  ..-
T Consensus       230 vVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia~P~~i---~~~l~~l~~v~l~d~d~l~~~~~~~~~~r~--~~~  304 (404)
T 1gpj_A          230 VVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPRDV---EEGVENIEDVEVRTIDDLRVIARENLERRR--KEI  304 (404)
T ss_dssp             EEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSCSB---CTTGGGSTTEEEEEHHHHHHHHHHHHHHHH--TTH
T ss_pred             EEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEccCCCCC---CccccccCCeEEEeHhhHHHHHHHHHHHHH--HHH
Confidence            99999997764 443332         246899999986532   111 0001112212221 111111   111  111


Q ss_pred             CcccHHHHHHHHHHHHHHHHHHhC
Q 024116          247 GGVGPMTVAMLLSNTLDSAKRAYG  270 (272)
Q Consensus       247 GGvGp~T~amL~~n~v~a~~~~~~  270 (272)
                      .|     ..|++.+.+.+++.|++
T Consensus       305 ~~-----~~~li~q~~~~f~~w~~  323 (404)
T 1gpj_A          305 PK-----VEKLIEEELSTVEEELE  323 (404)
T ss_dssp             HH-----HHHHHHHHHHHHHHHHH
T ss_pred             HH-----HHHHHHHHHHHHHHHHH
Confidence            22     34999999999999985

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=98.57  E-value=8.5e-08  Score=92.78  Aligned_cols=83  Identities=22%  Similarity=0.291  Sum_probs=71.6

Q ss_pred             HhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEEEEecCCCccccC
Q 024116          129 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVANLVRG  195 (272)
Q Consensus       129 ~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIVIsa~g~p~~i~~  195 (272)
                      ..+..+.||+++|||.|.+ |+.+|+.|...|++|++++++.             .++.+.+++||+||++++.+++++.
T Consensus       250 ~~~~~l~GktVgIIG~G~I-G~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~~~l~ell~~aDiVi~~~~t~~lI~~  328 (479)
T 1v8b_A          250 ATDFLISGKIVVICGYGDV-GKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVDVIKL  328 (479)
T ss_dssp             HHCCCCTTSEEEEECCSHH-HHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCSSSSSBCH
T ss_pred             ccccccCCCEEEEEeeCHH-HHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEecCHHHHHhcCCEEEECCChhhhcCH
Confidence            3567899999999999885 9999999999999999998763             2577889999999999988888876


Q ss_pred             CC---cCCCcEEEEeeeCCC
Q 024116          196 SW---LKPGAVVLDVGTCPV  212 (272)
Q Consensus       196 ~~---vk~g~vviDig~~~~  212 (272)
                      ++   +|+|++++|+|....
T Consensus       329 ~~l~~MK~gailiNvgrg~~  348 (479)
T 1v8b_A          329 EHLLKMKNNAVVGNIGHFDD  348 (479)
T ss_dssp             HHHTTCCTTCEEEECSSTTT
T ss_pred             HHHhhcCCCcEEEEeCCCCc
Confidence            54   589999999997644

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.54  E-value=3.7e-07  Score=85.62  Aligned_cols=78  Identities=23%  Similarity=0.307  Sum_probs=63.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC----------------------------------------
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN----------------------------------------  172 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~----------------------------------------  172 (272)
                      ++.|++|+|+|+|.+ |+.+++.+...|++|++++++...                                        
T Consensus       169 ~l~g~~V~ViGaG~i-G~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~  247 (384)
T 1l7d_A          169 TVPPARVLVFGVGVA-GLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ  247 (384)
T ss_dssp             EECCCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCH
T ss_pred             CCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhh
Confidence            678999999999885 999999999999999999875311                                        


Q ss_pred             ---HhhhcCCCcEEEEec---CC--CccccCCC---cCCCcEEEEeeeCC
Q 024116          173 ---PEQITSEADIVIAAA---GV--ANLVRGSW---LKPGAVVLDVGTCP  211 (272)
Q Consensus       173 ---l~~~l~~ADIVIsa~---g~--p~~i~~~~---vk~g~vviDig~~~  211 (272)
                         +.+.++.+|+||+++   |.  |++++.++   +++|.+++|+++++
T Consensus       248 ~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~  297 (384)
T 1l7d_A          248 AEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEA  297 (384)
T ss_dssp             HHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGG
T ss_pred             HHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCC
Confidence               556678899999999   53  44666544   58899999999865

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=98.50  E-value=1.6e-06  Score=80.71  Aligned_cols=174  Identities=13%  Similarity=0.130  Sum_probs=108.2

Q ss_pred             HHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCcc--ccccc--c
Q 024116           29 KIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF--HPLNI--G  104 (272)
Q Consensus        29 ~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~--~~~n~--g  104 (272)
                      ..+..++.|.++.+...+.. +++++.+.+      .+.+++++..-.|..++ .++++..+..|=|--.  ..-|.  -
T Consensus        32 ~~~~L~~~g~ev~~~~~~~~-~~~~~~~~~------~~ad~li~~~~~~~~~~-~~~l~~~p~Lk~i~~~g~G~d~id~~  103 (351)
T 3jtm_A           32 IRDWLESQGHQYIVTDDKEG-PDCELEKHI------PDLHVLISTPFHPAYVT-AERIKKAKNLKLLLTAGIGSDHIDLQ  103 (351)
T ss_dssp             CHHHHHHTTCEEEEESCCSS-TTSHHHHHT------TTCSEEEECTTSCCCBC-HHHHHHCSSCCEEEESSSCCTTBCHH
T ss_pred             HHHHHHHCCCEEEEeCCCCC-CHHHHHHHh------CCCEEEEEccCCCCCCC-HHHHhhCCCCeEEEEeCeeecccCHH
Confidence            35567788998887765432 345565555      34677776432233444 3566665444444211  11111  0


Q ss_pred             ccc-cC---CCCCc-cccCCHHHHHHHH----HH--------------------hCCCCccceEEEEcCCcccHHHHHHH
Q 024116          105 NLA-MR---GREPL-FIPCTPKGCIELL----IR--------------------SGVEIMGKNAVVIGRSNIVGLPTSLL  155 (272)
Q Consensus       105 ~l~-~~---~~~~~-~~p~Ta~g~~~~l----~~--------------------~~~~l~gk~v~ViG~g~~vG~~la~~  155 (272)
                      ... .|   .+.++ ...++|+-++-++    ++                    .+.++.||++.|||.|.+ |+.++..
T Consensus       104 ~a~~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~I-G~~vA~~  182 (351)
T 3jtm_A          104 AAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRI-GKLLLQR  182 (351)
T ss_dssp             HHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHH-HHHHHHH
T ss_pred             HHHhcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCHH-HHHHHHH
Confidence            000 00   01222 2233444333222    11                    146799999999999996 9999999


Q ss_pred             HHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCC-C---ccccCCC---cCCCcEEEEeeeCC
Q 024116          156 LQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGV-A---NLVRGSW---LKPGAVVLDVGTCP  211 (272)
Q Consensus       156 L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~-p---~~i~~~~---vk~g~vviDig~~~  211 (272)
                      |...|++|+.++++.              .++.+.+++||+|+.+++. |   ++++.+.   +|+|+++||++.-.
T Consensus       183 l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  259 (351)
T 3jtm_A          183 LKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGA  259 (351)
T ss_dssp             HGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGG
T ss_pred             HHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCch
Confidence            999999999998753              3688899999999999883 2   3565553   58999999998654

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.47  E-value=4.6e-07  Score=87.73  Aligned_cols=82  Identities=29%  Similarity=0.371  Sum_probs=70.4

Q ss_pred             HHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEEEEecCCCcccc
Q 024116          128 IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVANLVR  194 (272)
Q Consensus       128 ~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIVIsa~g~p~~i~  194 (272)
                      +..+..+.||+++|+|+|+ +|+++++.|+..|++|++++++.             .++.+.++.+|+|+.++|.++.+.
T Consensus       257 r~tg~~L~GKtVvVtGaGg-IG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv~~lee~~~~aDvVi~atG~~~vl~  335 (488)
T 3ond_A          257 RATDVMIAGKVAVVAGYGD-VGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTTGNKDIIM  335 (488)
T ss_dssp             HHHCCCCTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGTTTTCSEEEECSSCSCSBC
T ss_pred             HHcCCcccCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCccCCHHHHHHhcCEEEeCCCChhhhh
Confidence            4578889999999999997 59999999999999999998752             245677889999999999988876


Q ss_pred             CC---CcCCCcEEEEeeeC
Q 024116          195 GS---WLKPGAVVLDVGTC  210 (272)
Q Consensus       195 ~~---~vk~g~vviDig~~  210 (272)
                      .+   .++++++|+++|..
T Consensus       336 ~e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          336 LDHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             HHHHTTSCTTEEEEESSST
T ss_pred             HHHHHhcCCCeEEEEcCCC
Confidence            53   46889999999975

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=98.45  E-value=1.6e-06  Score=81.56  Aligned_cols=144  Identities=17%  Similarity=0.189  Sum_probs=100.5

Q ss_pred             HHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC---------CCCHhhhcCCCcEEEEecCC------
Q 024116          125 ELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL---------TKNPEQITSEADIVIAAAGV------  189 (272)
Q Consensus       125 ~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~---------t~~l~~~l~~ADIVIsa~g~------  189 (272)
                      .+.++.+.++.||++.|||.|.+ |++++..|...|++|+.+++.         ..++.+.+++||+|+.+++.      
T Consensus       108 ~l~r~~g~~l~gktvGIIGlG~I-G~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~  186 (381)
T 3oet_A          108 MLAERDGFSLRDRTIGIVGVGNV-GSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPY  186 (381)
T ss_dssp             HHHHHTTCCGGGCEEEEECCSHH-HHHHHHHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTT
T ss_pred             HHHHhcCCccCCCEEEEEeECHH-HHHHHHHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCccccc
Confidence            34466788999999999999996 999999999999999999753         24688999999999988872      


Q ss_pred             --CccccCCC---cCCCcEEEEeeeCCCCCC---CCCCCCCCceEec---ccch------hhhhhhceEeccCCCcccHH
Q 024116          190 --ANLVRGSW---LKPGAVVLDVGTCPVDVS---VDPSCEYGYRLMG---DVCY------EEAMRLASVITPVPGGVGPM  252 (272)
Q Consensus       190 --p~~i~~~~---vk~g~vviDig~~~~~~~---~~~~~~~~~k~~G---dvd~------~~~~~~~~~~tpvpGGvGp~  252 (272)
                        .++++.+.   +|+|+++||++.-..-++   .+...  .+++.|   ||-.      ..+.+..-.+||=.+|...-
T Consensus       187 ~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~--~g~i~gA~LDV~e~EP~~~~~L~~~~~i~TPHiag~t~e  264 (381)
T 3oet_A          187 KTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLN--AGQPLSVVLDVWEGEPDLNVALLEAVDIGTSHIAGYTLE  264 (381)
T ss_dssp             CCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH--TTCCEEEEESCCTTTTSCCHHHHHHSSEECSSCTTCCHH
T ss_pred             cchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHH--hCCCeEEEeeccccCCCCcchhhhCCEEECCccCcCcHH
Confidence              23565543   589999999986653210   00000  122322   5521      11223345789999998877


Q ss_pred             HHHHHHHHHHHHHHHHhCC
Q 024116          253 TVAMLLSNTLDSAKRAYGF  271 (272)
Q Consensus       253 T~amL~~n~v~a~~~~~~~  271 (272)
                      +..-....+++...+|++.
T Consensus       265 ~~~~~~~~~~~~l~~~l~~  283 (381)
T 3oet_A          265 GKARGTTQVFEAYSAFIGR  283 (381)
T ss_dssp             HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHcC
Confidence            7777777777777777653

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=98.39  E-value=4.4e-06  Score=79.45  Aligned_cols=225  Identities=17%  Similarity=0.139  Sum_probs=131.3

Q ss_pred             HHHHHcCC-eEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCcc--cccc--ccc
Q 024116           31 KACEEVGI-KSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF--HPLN--IGN  105 (272)
Q Consensus        31 ~~~~~~Gi-~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~--~~~n--~g~  105 (272)
                      ..+++.|. +.++  ++...+++|+.+.++      +++++++...  ..++ .+++++.+..|-|-..  ..-|  +-.
T Consensus        30 ~~l~~~g~~~v~~--~~~~~~~~~l~~~~~------~~d~l~v~~~--~~i~-~~~l~~~p~Lk~I~~~~~G~d~IDl~~   98 (416)
T 3k5p_A           30 EYFKSSGYTNVTH--LPKALDKADLIKAIS------SAHIIGIRSR--TQLT-EEIFAAANRLIAVGCFSVGTNQVELKA   98 (416)
T ss_dssp             HHHHHTTCCCEEE--CSSCCCHHHHHHHHT------TCSEEEECSS--CCBC-HHHHHHCTTCCEEEECSSCCTTBCHHH
T ss_pred             HHHHHCCCcEEEE--CCCCCCHHHHHHHcc------CCEEEEEcCC--CCCC-HHHHHhCCCcEEEEECccccCccCHHH
Confidence            34667787 5554  344557888877763      3677777542  1223 4677766556655322  1111  111


Q ss_pred             cc-cC---CCCCcc-ccCCHHHHHHHH----HH------------------hCCCCccceEEEEcCCcccHHHHHHHHHh
Q 024116          106 LA-MR---GREPLF-IPCTPKGCIELL----IR------------------SGVEIMGKNAVVIGRSNIVGLPTSLLLQR  158 (272)
Q Consensus       106 l~-~~---~~~~~~-~p~Ta~g~~~~l----~~------------------~~~~l~gk~v~ViG~g~~vG~~la~~L~~  158 (272)
                      .. +|   .+.+++ ..++++-++.++    ++                  .+.++.||++.|||.|.+ |+.++..|..
T Consensus        99 a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~~~~el~gktvGIIGlG~I-G~~vA~~l~~  177 (416)
T 3k5p_A           99 ARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNI-GSQVGNLAES  177 (416)
T ss_dssp             HHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCCSTTCEEEEECCSHH-HHHHHHHHHH
T ss_pred             HHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccCCCCccCCCCEEEEEeeCHH-HHHHHHHHHH
Confidence            00 00   012221 122333332221    11                  146789999999999986 9999999999


Q ss_pred             CCCEEEEEeCCC----------CCHhhhcCCCcEEEEecCC-C---ccccCCC---cCCCcEEEEeeeCCCCCC---CCC
Q 024116          159 HHATVSIVHALT----------KNPEQITSEADIVIAAAGV-A---NLVRGSW---LKPGAVVLDVGTCPVDVS---VDP  218 (272)
Q Consensus       159 ~ga~V~v~~~~t----------~~l~~~l~~ADIVIsa~g~-p---~~i~~~~---vk~g~vviDig~~~~~~~---~~~  218 (272)
                      .|++|+.++++.          .++.+.+++||+|+..++. +   +++..+.   +|+|+++||++.-..-+.   .+.
T Consensus       178 ~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~a  257 (416)
T 3k5p_A          178 LGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKV  257 (416)
T ss_dssp             TTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHH
T ss_pred             CCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHH
Confidence            999999998652          3688999999999999884 2   4676553   589999999987653210   000


Q ss_pred             CCCCCceEec---ccchhh------------hhhhceEeccCCCcccHHHHHHHHHHHHHHHHHHh
Q 024116          219 SCEYGYRLMG---DVCYEE------------AMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY  269 (272)
Q Consensus       219 ~~~~~~k~~G---dvd~~~------------~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~~~~~  269 (272)
                      ..  .+++.|   ||-..+            ..-..-.+||=.||.-.-+..-+...+++...+|+
T Consensus       258 L~--~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~nl~~~l  321 (416)
T 3k5p_A          258 LQ--EGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERIGTEVTRKLVEYS  321 (416)
T ss_dssp             HH--TTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HH--cCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            00  123322   331111            11123568888888877766666555555555554

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=98.37  E-value=3.5e-06  Score=77.94  Aligned_cols=137  Identities=15%  Similarity=0.078  Sum_probs=93.6

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------CCHhhhcCCCcEEEEecCCC----cccc
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGVA----NLVR  194 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t------------~~l~~~l~~ADIVIsa~g~p----~~i~  194 (272)
                      +.++.||++.|||.|.+ |+.+++.|...|++|+.++++.            .++.+.+++||+|+.+++..    +++.
T Consensus       160 ~~~l~g~tvgIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~  238 (335)
T 2g76_A          160 GTELNGKTLGILGLGRI-GREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLN  238 (335)
T ss_dssp             BCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCCCTTTTTSBC
T ss_pred             CcCCCcCEEEEEeECHH-HHHHHHHHHHCCCEEEEECCCcchhhhhhcCceeCCHHHHHhcCCEEEEecCCCHHHHHhhC
Confidence            35789999999999996 9999999999999999998753            25778899999999998842    3564


Q ss_pred             C---CCcCCCcEEEEeeeCCCCCCCCCCCC--CCceEec---cc-------chhhhhhhceEeccCCCcccHHHHHHHHH
Q 024116          195 G---SWLKPGAVVLDVGTCPVDVSVDPSCE--YGYRLMG---DV-------CYEEAMRLASVITPVPGGVGPMTVAMLLS  259 (272)
Q Consensus       195 ~---~~vk~g~vviDig~~~~~~~~~~~~~--~~~k~~G---dv-------d~~~~~~~~~~~tpvpGGvGp~T~amL~~  259 (272)
                      .   +.+|+|+++||++.-..-+. +....  ..+++-|   ||       +..-+....-.+||-.+|.-.-+..-+..
T Consensus       239 ~~~l~~mk~gailIN~arg~vvd~-~aL~~aL~~g~i~gA~lDV~~~EP~~~~~L~~~~nvilTPH~~~~t~e~~~~~~~  317 (335)
T 2g76_A          239 DNTFAQCKKGVRVVNCARGGIVDE-GALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGE  317 (335)
T ss_dssp             HHHHTTSCTTEEEEECSCTTSBCH-HHHHHHHHHTSEEEEEESCCSSSSCSCCHHHHSTTEEECSSCTTCBHHHHHHHHH
T ss_pred             HHHHhhCCCCcEEEECCCccccCH-HHHHHHHHhCCccEEEEeecCCCCCCCchHHhCCCEEECCcCCCCCHHHHHHHHH
Confidence            3   35689999999997654210 00000  0123332   33       11112234567899999988777666666


Q ss_pred             HHHHHHHHHh
Q 024116          260 NTLDSAKRAY  269 (272)
Q Consensus       260 n~v~a~~~~~  269 (272)
                      .+++..++++
T Consensus       318 ~~~~nl~~~~  327 (335)
T 2g76_A          318 EIAVQFVDMV  327 (335)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            6666555543

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=98.35  E-value=3.8e-06  Score=78.63  Aligned_cols=135  Identities=13%  Similarity=0.148  Sum_probs=90.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------CCHhhhcCCCcEEEEecCC-C---ccccC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGV-A---NLVRG  195 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t------------~~l~~~l~~ADIVIsa~g~-p---~~i~~  195 (272)
                      .++.||++.|||.|.+ |++++..|...|++|+.++++.            .++.+.+++||+|+.+++. |   ++++.
T Consensus       172 ~~l~gktvGIIGlG~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~  250 (365)
T 4hy3_A          172 RLIAGSEIGIVGFGDL-GKALRRVLSGFRARIRVFDPWLPRSMLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGA  250 (365)
T ss_dssp             CCSSSSEEEEECCSHH-HHHHHHHHTTSCCEEEEECSSSCHHHHHHTTCEECCHHHHHHSCSEEEECSCSSCC---CCCH
T ss_pred             cccCCCEEEEecCCcc-cHHHHHhhhhCCCEEEEECCCCCHHHHhhcCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhcCH
Confidence            4688999999999996 9999999999999999998753            3577889999999998873 2   35655


Q ss_pred             C---CcCCCcEEEEeeeCCCCCC---CCCCCCCCceEe--cccch--------hhhhhhceEeccCCCcccHHHHHHHHH
Q 024116          196 S---WLKPGAVVLDVGTCPVDVS---VDPSCEYGYRLM--GDVCY--------EEAMRLASVITPVPGGVGPMTVAMLLS  259 (272)
Q Consensus       196 ~---~vk~g~vviDig~~~~~~~---~~~~~~~~~k~~--Gdvd~--------~~~~~~~~~~tpvpGGvGp~T~amL~~  259 (272)
                      +   .+|+|+++||++.-..-+.   .+...  .+++-  =||-.        .-..-..-.+||=.||.-.-+...+..
T Consensus       251 ~~l~~mk~gailIN~aRG~~vde~aL~~aL~--~g~i~aaLDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~  328 (365)
T 4hy3_A          251 EAFSSMRRGAAFILLSRADVVDFDALMAAVS--SGHIVAASDVYPEEPLPLDHPVRSLKGFIRSAHRAGALDSAFKKMGD  328 (365)
T ss_dssp             HHHHTSCTTCEEEECSCGGGSCHHHHHHHHH--TTSSEEEESCCSSSSCCTTCGGGTCTTEEECCSCSSCCHHHHHHHHH
T ss_pred             HHHhcCCCCcEEEECcCCchhCHHHHHHHHH--cCCceEEeeCCCCCCCCCCChhhcCCCEEECCccccCHHHHHHHHHH
Confidence            4   3689999999994432100   00000  00110  01110        001112457899999988877777777


Q ss_pred             HHHHHHHHHh
Q 024116          260 NTLDSAKRAY  269 (272)
Q Consensus       260 n~v~a~~~~~  269 (272)
                      .+++..++|+
T Consensus       329 ~~~~ni~~~~  338 (365)
T 4hy3_A          329 MVLEDMDLMD  338 (365)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777766664

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.35  E-value=2.9e-07  Score=87.05  Aligned_cols=77  Identities=21%  Similarity=0.270  Sum_probs=62.3

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------------------------------C
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------------------------N  172 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-----------------------------------------~  172 (272)
                      +.|++|+|+|+|.+ |+.+++++...|++|++++++..                                         .
T Consensus       170 l~g~~V~ViGaG~i-G~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  248 (401)
T 1x13_A          170 VPPAKVMVIGAGVA-GLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMEL  248 (401)
T ss_dssp             ECCCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHH
Confidence            67999999999885 99999999999999999987631                                         1


Q ss_pred             HhhhcCCCcEEEEecCC-----CccccCCC---cCCCcEEEEeeeCC
Q 024116          173 PEQITSEADIVIAAAGV-----ANLVRGSW---LKPGAVVLDVGTCP  211 (272)
Q Consensus       173 l~~~l~~ADIVIsa~g~-----p~~i~~~~---vk~g~vviDig~~~  211 (272)
                      +.+.++.+|+||++++.     |.+++.++   +++|.+|+|++.++
T Consensus       249 l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~  295 (401)
T 1x13_A          249 FAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQN  295 (401)
T ss_dssp             HHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGG
T ss_pred             HHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCC
Confidence            45667789999999644     35676655   47899999999764

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=98.33  E-value=2.4e-07  Score=87.48  Aligned_cols=128  Identities=16%  Similarity=0.101  Sum_probs=84.2

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC---EEEEEeCCC---CCHhhhcCCCcEEEEecC----CCccccCCCc----CC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHALT---KNPEQITSEADIVIAAAG----VANLVRGSWL----KP  200 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga---~V~v~~~~t---~~l~~~l~~ADIVIsa~g----~p~~i~~~~v----k~  200 (272)
                      ...+|+|||+.|.||+.++..+...|+   .|++.+++.   ....+.++++||||+++-    .|.+|+.+|+    |+
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~~~~i~~aDivIn~vlig~~aP~Lvt~e~v~~m~k~  292 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGPFDEIPQADIFINCIYLSKPIAPFTNMEKLNNPNRR  292 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSCCTHHHHSSEEEECCCCCSSCCCSCCHHHHCCTTCC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCchhhHhhCCEEEECcCcCCCCCcccCHHHHhcCcCC
Confidence            577999999955579999999999998   899997643   111256789999999996    3778998876    77


Q ss_pred             CcEEEEeeeCCC---CCC---CCCCCCC-CceEecccchhhhhhhceEeccCCCcccHHHHHHHHHHHHHHH
Q 024116          201 GAVVLDVGTCPV---DVS---VDPSCEY-GYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA  265 (272)
Q Consensus       201 g~vviDig~~~~---~~~---~~~~~~~-~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~  265 (272)
                      |++|+|++..+-   ++.   ..+++.. .+-...+.+-..  =....++-.||-+ |.|.+.++.|.+.-+
T Consensus       293 gsVIVDVA~D~GG~~et~~f~~~~Tt~~~P~~~~~g~~~~~--V~~~~v~nlP~~l-PrtAS~~~sn~llp~  361 (394)
T 2qrj_A          293 LRTVVDVSADTTNPHNPIPIYTVATVFNKPTVLVPTTAGPK--LSVISIDHLPSLL-PREASEFFSHDLLPS  361 (394)
T ss_dssp             CCEEEETTCCTTCTTCSSCSCCCCCBTTBCCEEECCSSSSC--EEEECCTTGGGGS-HHHHHHHHHHHHHHH
T ss_pred             CeEEEEEecCCCCCcCcccccccCCccCCCEEEECCCCCCC--EEEEEeCChhhhh-HHHHHHHHHHHHHHH
Confidence            999999987652   100   0011100 010110000000  0122355678888 999999998887654

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=98.32  E-value=1.5e-06  Score=80.18  Aligned_cols=80  Identities=20%  Similarity=0.310  Sum_probs=66.7

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------CCHhhhcCCCcEEEEecCC-C---cccc
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGV-A---NLVR  194 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t------------~~l~~~l~~ADIVIsa~g~-p---~~i~  194 (272)
                      +.++.||++.|||.|.+ |++++..|...|++|+.++++.            .++.+.+++||+|+.+++. |   +++.
T Consensus       135 ~~~l~g~tvGIIGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~  213 (324)
T 3hg7_A          135 YQGLKGRTLLILGTGSI-GQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFT  213 (324)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBC
T ss_pred             CcccccceEEEEEECHH-HHHHHHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhH
Confidence            45789999999999996 9999999999999999998763            2567889999999999873 2   3566


Q ss_pred             CCC---cCCCcEEEEeeeCC
Q 024116          195 GSW---LKPGAVVLDVGTCP  211 (272)
Q Consensus       195 ~~~---vk~g~vviDig~~~  211 (272)
                      .+.   +|+|+++||++.-.
T Consensus       214 ~~~l~~mk~gailIN~aRG~  233 (324)
T 3hg7_A          214 ASRFEHCKPGAILFNVGRGN  233 (324)
T ss_dssp             TTTTTCSCTTCEEEECSCGG
T ss_pred             HHHHhcCCCCcEEEECCCch
Confidence            554   58899999998654

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=98.28  E-value=5.7e-06  Score=77.01  Aligned_cols=137  Identities=13%  Similarity=0.115  Sum_probs=93.4

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEEEEecCC-C---ccc
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGV-A---NLV  193 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIVIsa~g~-p---~~i  193 (272)
                      +.++.||++.|||.|.+ |++++..|...|++|+.++++.             .++.+.+++||+|+.+++. +   +++
T Consensus       155 ~~~l~g~tvGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li  233 (352)
T 3gg9_A          155 GRVLKGQTLGIFGYGKI-GQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSII  233 (352)
T ss_dssp             BCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCB
T ss_pred             CccCCCCEEEEEeECHH-HHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhh
Confidence            35789999999999996 9999999999999999998752             3788899999999998873 2   356


Q ss_pred             cCC---CcCCCcEEEEeeeCCCCCCCCCCCC--CCceEec---ccc--------hhhhhhhceEeccCCCcccHHHHHHH
Q 024116          194 RGS---WLKPGAVVLDVGTCPVDVSVDPSCE--YGYRLMG---DVC--------YEEAMRLASVITPVPGGVGPMTVAML  257 (272)
Q Consensus       194 ~~~---~vk~g~vviDig~~~~~~~~~~~~~--~~~k~~G---dvd--------~~~~~~~~~~~tpvpGGvGp~T~amL  257 (272)
                      ..+   .+|+|+++||++.-..-+. +....  ..+++.|   ||-        ..-..-..-.+||=.||.-.-+...+
T Consensus       234 ~~~~l~~mk~gailIN~aRg~~vd~-~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~  312 (352)
T 3gg9_A          234 TVADLTRMKPTALFVNTSRAELVEE-NGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYEMY  312 (352)
T ss_dssp             CHHHHTTSCTTCEEEECSCGGGBCT-THHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEECCSCTTCBHHHHHHH
T ss_pred             CHHHHhhCCCCcEEEECCCchhhcH-HHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEECCCCCCCCHHHHHHH
Confidence            544   4689999999995443110 00000  0011111   221        01112235678998899888887777


Q ss_pred             HHHHHHHHHHHh
Q 024116          258 LSNTLDSAKRAY  269 (272)
Q Consensus       258 ~~n~v~a~~~~~  269 (272)
                      ...+++..++|+
T Consensus       313 ~~~~~~ni~~~~  324 (352)
T 3gg9_A          313 FGIAFQNILDIL  324 (352)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777777766664

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=98.28  E-value=1.2e-06  Score=81.50  Aligned_cols=136  Identities=15%  Similarity=0.160  Sum_probs=94.0

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------CCHhhhcCCCcEEEEecCCC----cccc
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGVA----NLVR  194 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t------------~~l~~~l~~ADIVIsa~g~p----~~i~  194 (272)
                      +.++.||++.|||.|.+ |++++..|...|++|+.++++.            .++.+.+++||+|+.+++..    +++.
T Consensus       168 g~~l~gktvGIIGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~  246 (345)
T 4g2n_A          168 GMGLTGRRLGIFGMGRI-GRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLD  246 (345)
T ss_dssp             BCCCTTCEEEEESCSHH-HHHHHHHHHTTTCEEEEECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBC
T ss_pred             ccccCCCEEEEEEeChh-HHHHHHHHHHCCCEEEEECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhC
Confidence            45789999999999996 9999999999999999998763            36788999999999999842    4566


Q ss_pred             CCC---cCCCcEEEEeeeCCCCCC---CCCCCCCCceEec---ccch-------hhhhhhceEeccCCCcccHHHHHHHH
Q 024116          195 GSW---LKPGAVVLDVGTCPVDVS---VDPSCEYGYRLMG---DVCY-------EEAMRLASVITPVPGGVGPMTVAMLL  258 (272)
Q Consensus       195 ~~~---vk~g~vviDig~~~~~~~---~~~~~~~~~k~~G---dvd~-------~~~~~~~~~~tpvpGGvGp~T~amL~  258 (272)
                      .+.   +|+|+++||++.-..-+.   .+...  .+++.|   ||-.       .-..-..-.+||=.||.-.-+..-+.
T Consensus       247 ~~~l~~mk~gailIN~aRG~~vde~aL~~aL~--~g~i~gA~LDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~  324 (345)
T 4g2n_A          247 HDRIAKIPEGAVVINISRGDLINDDALIEALR--SKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAMG  324 (345)
T ss_dssp             HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH--HTSEEEEEESCCTTTTSCCTTGGGCTTEEECCSCTTCBHHHHHHHH
T ss_pred             HHHHhhCCCCcEEEECCCCchhCHHHHHHHHH--hCCceEEEecCCCCCCCCCchHHhCCCEEEcCccCcCCHHHHHHHH
Confidence            554   589999999986543210   00000  123433   3311       11111246788888888877666666


Q ss_pred             HHHHHHHHHHh
Q 024116          259 SNTLDSAKRAY  269 (272)
Q Consensus       259 ~n~v~a~~~~~  269 (272)
                      ..+++..++++
T Consensus       325 ~~~~~ni~~~l  335 (345)
T 4g2n_A          325 WLLIQGIEALN  335 (345)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666666554

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.27  E-value=1.5e-06  Score=81.37  Aligned_cols=78  Identities=31%  Similarity=0.413  Sum_probs=62.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------CHhhhcCCCcEEEEecCCCc
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAGVAN  191 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~---------------------~l~~~l~~ADIVIsa~g~p~  191 (272)
                      .+.|++|+|+|.|++ |+.+++.+...|++|++++++..                     ++.+.++.+|+||++++.|.
T Consensus       165 ~l~g~~V~ViG~G~i-G~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~  243 (377)
T 2vhw_A          165 GVEPADVVVIGAGTA-GYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPG  243 (377)
T ss_dssp             TBCCCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTT
T ss_pred             CCCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCC
Confidence            478999999999875 99999999999999999987531                     23455678999999997653


Q ss_pred             -----cccCC---CcCCCcEEEEeeeCC
Q 024116          192 -----LVRGS---WLKPGAVVLDVGTCP  211 (272)
Q Consensus       192 -----~i~~~---~vk~g~vviDig~~~  211 (272)
                           ++..+   .+++|.++||++..+
T Consensus       244 ~~t~~li~~~~l~~mk~g~~iV~va~~~  271 (377)
T 2vhw_A          244 AKAPKLVSNSLVAHMKPGAVLVDIAIDQ  271 (377)
T ss_dssp             SCCCCCBCHHHHTTSCTTCEEEEGGGGT
T ss_pred             CCCcceecHHHHhcCCCCcEEEEEecCC
Confidence                 34433   468899999999754

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=98.25  E-value=1e-06  Score=81.18  Aligned_cols=135  Identities=16%  Similarity=0.133  Sum_probs=88.5

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------CCHhhhcCCCcEEEEecCC----Ccccc
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGV----ANLVR  194 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t------------~~l~~~l~~ADIVIsa~g~----p~~i~  194 (272)
                      +.++.||++.|||.|.+ |++++..|...|++|+.++++.            .++.+.+++||+|+.+++.    .+++.
T Consensus       132 ~~~l~gktvGIiGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~  210 (324)
T 3evt_A          132 TSTLTGQQLLIYGTGQI-GQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFS  210 (324)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBS
T ss_pred             CccccCCeEEEECcCHH-HHHHHHHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcC
Confidence            56789999999999996 9999999999999999998763            2467889999999999873    23565


Q ss_pred             CC---CcCCCcEEEEeeeCCCCCC---CCCCCCCCceEec---ccchhh--------hhhhceEeccCCCcccHHHHHHH
Q 024116          195 GS---WLKPGAVVLDVGTCPVDVS---VDPSCEYGYRLMG---DVCYEE--------AMRLASVITPVPGGVGPMTVAML  257 (272)
Q Consensus       195 ~~---~vk~g~vviDig~~~~~~~---~~~~~~~~~k~~G---dvd~~~--------~~~~~~~~tpvpGGvGp~T~amL  257 (272)
                      .+   .+|+|+++||++.-..-+.   .+...  .+++.|   ||-..+        ..-..-.+||=.+|.-.-+..-+
T Consensus       211 ~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~--~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~  288 (324)
T 3evt_A          211 TELFQQTKQQPMLINIGRGPAVDTTALMTALD--HHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATV  288 (324)
T ss_dssp             HHHHHTCCSCCEEEECSCGGGBCHHHHHHHHH--TTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCCCHHHHH
T ss_pred             HHHHhcCCCCCEEEEcCCChhhhHHHHHHHHH--hCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChHHHHHHH
Confidence            54   4589999999996543110   00000  122222   332111        11124568888888765444444


Q ss_pred             HHHHHHHHHHH
Q 024116          258 LSNTLDSAKRA  268 (272)
Q Consensus       258 ~~n~v~a~~~~  268 (272)
                      ....++..+++
T Consensus       289 ~~~~~~nl~~~  299 (324)
T 3evt_A          289 FPIFAANFAQF  299 (324)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44444444444

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=98.24  E-value=1.1e-06  Score=80.77  Aligned_cols=80  Identities=14%  Similarity=0.116  Sum_probs=66.1

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------CHhhhcCCCcEEEEecCC----Ccccc
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NPEQITSEADIVIAAAGV----ANLVR  194 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~------------~l~~~l~~ADIVIsa~g~----p~~i~  194 (272)
                      +.++.||++.|||.|.+ |+.++..|...|++|+.++++.+            ++.+.+++||+|+.+++.    .++++
T Consensus       134 ~~~l~g~tvGIiG~G~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~  212 (315)
T 3pp8_A          134 EYTREEFSVGIMGAGVL-GAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIIN  212 (315)
T ss_dssp             CCCSTTCCEEEECCSHH-HHHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBS
T ss_pred             CCCcCCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhcc
Confidence            35789999999999996 99999999999999999987642            467889999999999873    23565


Q ss_pred             CC---CcCCCcEEEEeeeCC
Q 024116          195 GS---WLKPGAVVLDVGTCP  211 (272)
Q Consensus       195 ~~---~vk~g~vviDig~~~  211 (272)
                      .+   .+|+|+++||++.-.
T Consensus       213 ~~~l~~mk~gailIN~aRG~  232 (315)
T 3pp8_A          213 SELLDQLPDGAYVLNLARGV  232 (315)
T ss_dssp             HHHHTTSCTTEEEEECSCGG
T ss_pred             HHHHhhCCCCCEEEECCCCh
Confidence            44   468999999998654

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.23  E-value=2.3e-06  Score=83.14  Aligned_cols=82  Identities=22%  Similarity=0.310  Sum_probs=68.7

Q ss_pred             hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEEEEecCCCccccC-
Q 024116          130 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVANLVRG-  195 (272)
Q Consensus       130 ~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIVIsa~g~p~~i~~-  195 (272)
                      .+..+.|++|+|+|.|.+ |+.+++.|...|++|++++++.             .++.+.++.+|+||.++|.++++.. 
T Consensus       268 ~~~~l~GktV~IiG~G~I-G~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~~~l~e~l~~aDvVi~atgt~~~i~~~  346 (494)
T 3ce6_A          268 TDALIGGKKVLICGYGDV-GKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATGNKDIIMLE  346 (494)
T ss_dssp             HCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHGGGCSEEEECSSSSCSBCHH
T ss_pred             cCCCCCcCEEEEEccCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEEecHHHHHhCCCEEEECCCCHHHHHHH
Confidence            355789999999999885 9999999999999999998753             2456778899999999998888764 


Q ss_pred             --CCcCCCcEEEEeeeCCC
Q 024116          196 --SWLKPGAVVLDVGTCPV  212 (272)
Q Consensus       196 --~~vk~g~vviDig~~~~  212 (272)
                        +.+++|.+++++|....
T Consensus       347 ~l~~mk~ggilvnvG~~~~  365 (494)
T 3ce6_A          347 HIKAMKDHAILGNIGHFDN  365 (494)
T ss_dssp             HHHHSCTTCEEEECSSSGG
T ss_pred             HHHhcCCCcEEEEeCCCCC
Confidence              34689999999997643

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=98.22  E-value=1.5e-06  Score=80.80  Aligned_cols=135  Identities=18%  Similarity=0.128  Sum_probs=92.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------CHhhhcCCCcEEEEecCC----CccccCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------NPEQITSEADIVIAAAGV----ANLVRGSW  197 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~----------~l~~~l~~ADIVIsa~g~----p~~i~~~~  197 (272)
                      .++.||++.|||.|.+ |++++..|...|++|+.++++..          ++.+.+++||+|+.+++.    .+++..+.
T Consensus       144 ~~l~gktvgIiGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~  222 (343)
T 2yq5_A          144 NEIYNLTVGLIGVGHI-GSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQ  222 (343)
T ss_dssp             CCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHH
T ss_pred             cccCCCeEEEEecCHH-HHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHH
Confidence            3678999999999996 99999999999999999988642          577889999999999983    23566554


Q ss_pred             ---cCCCcEEEEeeeCCCCCC---CCCCCCCCce---Eecccchhh---------------------hhhhceEeccCCC
Q 024116          198 ---LKPGAVVLDVGTCPVDVS---VDPSCEYGYR---LMGDVCYEE---------------------AMRLASVITPVPG  247 (272)
Q Consensus       198 ---vk~g~vviDig~~~~~~~---~~~~~~~~~k---~~Gdvd~~~---------------------~~~~~~~~tpvpG  247 (272)
                         +|+|+++||++.-..-+.   .+...  .++   ..=||-..+                     ..-..-.+||=.|
T Consensus       223 l~~mk~gailIN~aRg~~vd~~aL~~aL~--~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvilTPHia  300 (343)
T 2yq5_A          223 LKEMKKSAYLINCARGELVDTGALIKALQ--DGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSA  300 (343)
T ss_dssp             HHHSCTTCEEEECSCGGGBCHHHHHHHHH--HTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEEECSSCT
T ss_pred             HhhCCCCcEEEECCCChhhhHHHHHHHHH--cCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEEECCccc
Confidence               589999999996543110   00000  011   112332111                     1112456889889


Q ss_pred             cccHHHHHHHHHHHHHHHHHHh
Q 024116          248 GVGPMTVAMLLSNTLDSAKRAY  269 (272)
Q Consensus       248 GvGp~T~amL~~n~v~a~~~~~  269 (272)
                      |.-.-+..-+...+++..++|+
T Consensus       301 ~~t~ea~~~~~~~~~~ni~~~l  322 (343)
T 2yq5_A          301 FYTETSIRNMVQICLTDQLTIA  322 (343)
T ss_dssp             TCBHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHH
Confidence            9888777777777776666654

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=98.21  E-value=1.8e-06  Score=80.14  Aligned_cols=136  Identities=21%  Similarity=0.263  Sum_probs=87.4

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------CCHhhhcCCCcEEEEecCC-C---ccccCC-
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV-A---NLVRGS-  196 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t---------~~l~~~l~~ADIVIsa~g~-p---~~i~~~-  196 (272)
                      +.++.||++.|||.|.+ |+++|..|...|++|+.++++.         .++.+.+++||+|+.+++. |   +++..+ 
T Consensus       166 ~~~l~gktiGIIGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~  244 (340)
T 4dgs_A          166 GHSPKGKRIGVLGLGQI-GRALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASL  244 (340)
T ss_dssp             CCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSCCTTSCCEECSSHHHHHHTCSEEEECC----------CHHH
T ss_pred             cccccCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHH
Confidence            35789999999999996 9999999999999999998764         3678999999999999883 2   345544 


Q ss_pred             --CcCCCcEEEEeeeCCCCCC---CCCCCCCCceEec---ccchh------hh-hhhceEeccCCCcccHHHHHHHHHHH
Q 024116          197 --WLKPGAVVLDVGTCPVDVS---VDPSCEYGYRLMG---DVCYE------EA-MRLASVITPVPGGVGPMTVAMLLSNT  261 (272)
Q Consensus       197 --~vk~g~vviDig~~~~~~~---~~~~~~~~~k~~G---dvd~~------~~-~~~~~~~tpvpGGvGp~T~amL~~n~  261 (272)
                        .+++++++||++.-..-+.   .+...  .+++.|   ||-..      .+ .-..-.+||=.||.-.-+..-+...+
T Consensus       245 l~~mk~gailIN~aRG~vvde~aL~~aL~--~g~i~gA~LDVf~~EP~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~  322 (340)
T 4dgs_A          245 LQALGPEGIVVNVARGNVVDEDALIEALK--SGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAMGKLV  322 (340)
T ss_dssp             HHHTTTTCEEEECSCC----------------CCSSEEEESCCSSSSSCCSHHHHSSSEEECSSCSSCCHHHHHHHHHHH
T ss_pred             HhcCCCCCEEEECCCCcccCHHHHHHHHH--cCCceEEEeCCcCCCCCCccchhhCCCEEEcCcCCcCCHHHHHHHHHHH
Confidence              3589999999986653210   11111  123322   44211      11 11245788888888776666555555


Q ss_pred             HHHHHHHh
Q 024116          262 LDSAKRAY  269 (272)
Q Consensus       262 v~a~~~~~  269 (272)
                      ++...+++
T Consensus       323 ~~nl~~~~  330 (340)
T 4dgs_A          323 LANLAAHF  330 (340)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555544

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=98.21  E-value=1.4e-06  Score=79.18  Aligned_cols=79  Identities=16%  Similarity=0.273  Sum_probs=66.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------CCHhhhcCCCcEEEEecCC-C---ccccC---
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV-A---NLVRG---  195 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t---------~~l~~~l~~ADIVIsa~g~-p---~~i~~---  195 (272)
                      .++.||++.|||.|.+ |++++..|...|++|+.++++.         .++.+.+++||+|+.+++. +   +++..   
T Consensus       118 ~~l~g~tvGIIGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  196 (290)
T 3gvx_A          118 TLLYGKALGILGYGGI-GRRVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLL  196 (290)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHH
T ss_pred             eeeecchheeeccCch-hHHHHHHHHhhCcEEEEEeccccccccccccCChHHHhhccCeEEEEeeccccchhhhhHHHH
Confidence            3689999999999996 9999999999999999998764         3688899999999999983 3   34544   


Q ss_pred             CCcCCCcEEEEeeeCC
Q 024116          196 SWLKPGAVVLDVGTCP  211 (272)
Q Consensus       196 ~~vk~g~vviDig~~~  211 (272)
                      +.+|+|+++||++.-.
T Consensus       197 ~~mk~gailIN~aRG~  212 (290)
T 3gvx_A          197 ANARKNLTIVNVARAD  212 (290)
T ss_dssp             TTCCTTCEEEECSCGG
T ss_pred             hhhhcCceEEEeehhc
Confidence            3568999999999554

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=98.20  E-value=2.7e-06  Score=77.57  Aligned_cols=79  Identities=25%  Similarity=0.312  Sum_probs=65.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------CCHhhhcCCCcEEEEecCCC----ccccC---CC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------KNPEQITSEADIVIAAAGVA----NLVRG---SW  197 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------~~l~~~l~~ADIVIsa~g~p----~~i~~---~~  197 (272)
                      ++.||++.|||.|.+ |+.++..|...|++|++++++.        .++.+.+++||+|+.+++..    ++++.   ..
T Consensus       121 ~l~g~~vgIIG~G~I-G~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~  199 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEI-GTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLAL  199 (303)
T ss_dssp             CCTTCEEEEESCSTH-HHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTT
T ss_pred             CCCCCEEEEEccCHH-HHHHHHHHHHCCCEEEEECCCccccCcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhh
Confidence            689999999999996 9999999999999999998753        35778899999999998742    34653   35


Q ss_pred             cCCCcEEEEeeeCCC
Q 024116          198 LKPGAVVLDVGTCPV  212 (272)
Q Consensus       198 vk~g~vviDig~~~~  212 (272)
                      +|+|+++||++.-..
T Consensus       200 mk~gailin~srg~~  214 (303)
T 1qp8_A          200 MAEDAVFVNVGRAEV  214 (303)
T ss_dssp             SCTTCEEEECSCGGG
T ss_pred             CCCCCEEEECCCCcc
Confidence            689999999987643

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=98.20  E-value=1.9e-06  Score=79.43  Aligned_cols=79  Identities=19%  Similarity=0.242  Sum_probs=65.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------CHhhhcCCCcEEEEecCCC----ccccCC-
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------NPEQITSEADIVIAAAGVA----NLVRGS-  196 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~----------~l~~~l~~ADIVIsa~g~p----~~i~~~-  196 (272)
                      .++.||++.|||.|.+ |+.+++.|...|++|++++++..          ++.+.+++||+|+.+++..    ++++.+ 
T Consensus       142 ~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~  220 (331)
T 1xdw_A          142 KEVRNCTVGVVGLGRI-GRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDF  220 (331)
T ss_dssp             CCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHH
T ss_pred             cCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCccHHHHhccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHH
Confidence            4689999999999996 99999999999999999987642          4678889999999988742    456543 


Q ss_pred             --CcCCCcEEEEeeeCC
Q 024116          197 --WLKPGAVVLDVGTCP  211 (272)
Q Consensus       197 --~vk~g~vviDig~~~  211 (272)
                        .+|+|+++||++...
T Consensus       221 l~~mk~ga~lin~srg~  237 (331)
T 1xdw_A          221 LKKMKDGAILVNCARGQ  237 (331)
T ss_dssp             HHTSCTTEEEEECSCGG
T ss_pred             HhhCCCCcEEEECCCcc
Confidence              468999999999654

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=98.20  E-value=2.6e-06  Score=80.17  Aligned_cols=144  Identities=16%  Similarity=0.120  Sum_probs=96.9

Q ss_pred             HHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC---------CCCHhhhcCCCcEEEEecCC-C---
Q 024116          124 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL---------TKNPEQITSEADIVIAAAGV-A---  190 (272)
Q Consensus       124 ~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~---------t~~l~~~l~~ADIVIsa~g~-p---  190 (272)
                      +.+.++.+.++.||++.|||.|.+ |+.++..|...|++|+++++.         ..++.+.+++||+|+.+++. +   
T Consensus       104 L~l~r~~~~~l~g~tvGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~g~  182 (380)
T 2o4c_A          104 LAMAEVRGADLAERTYGVVGAGQV-GGRLVEVLRGLGWKVLVCDPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDGE  182 (380)
T ss_dssp             HHHHHHHTCCGGGCEEEEECCSHH-HHHHHHHHHHTTCEEEEECHHHHHHSTTSCCCCHHHHHHHCSEEEECCCCCSSSS
T ss_pred             HHHHhhhhcccCCCEEEEEeCCHH-HHHHHHHHHHCCCEEEEEcCChhhhccCcccCCHHHHHHhCCEEEEeccCccccc
Confidence            334456688999999999999985 999999999999999998743         23678889999999988862 2   


Q ss_pred             ----ccccCC---CcCCCcEEEEeeeCCCCCC---CCCCCCCCce---Eecccch------hhhhhhceEeccCCCcccH
Q 024116          191 ----NLVRGS---WLKPGAVVLDVGTCPVDVS---VDPSCEYGYR---LMGDVCY------EEAMRLASVITPVPGGVGP  251 (272)
Q Consensus       191 ----~~i~~~---~vk~g~vviDig~~~~~~~---~~~~~~~~~k---~~Gdvd~------~~~~~~~~~~tpvpGGvGp  251 (272)
                          ++++.+   .+|+|+++||++....-+.   .+...  .++   ..=||-.      ..+.+..-.+||=.+|...
T Consensus       183 ~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~--~g~i~~A~LDV~~~EP~~~~~l~~~nvi~TPHiag~t~  260 (380)
T 2o4c_A          183 HPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLE--GGADLEVALDVWEGEPQADPELAARCLIATPHIAGYSL  260 (380)
T ss_dssp             SCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHH--TTCCEEEEESCCTTTTSCCHHHHTTCSEECSSCTTCCH
T ss_pred             cchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH--hCCCceEEeeeeccCCCCchhhccCCEEEccccCcCCH
Confidence                345543   4589999999996653210   00000  112   2223311      1122234578998899887


Q ss_pred             HHHHHHHHHHHHHHHHHhC
Q 024116          252 MTVAMLLSNTLDSAKRAYG  270 (272)
Q Consensus       252 ~T~amL~~n~v~a~~~~~~  270 (272)
                      -+..-....+++...++++
T Consensus       261 e~~~~~~~~~~~nl~~~l~  279 (380)
T 2o4c_A          261 EGKLRGTAQIYQAYCAWRG  279 (380)
T ss_dssp             HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHc
Confidence            7766666666666665553

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=98.18  E-value=1.7e-06  Score=79.87  Aligned_cols=136  Identities=19%  Similarity=0.180  Sum_probs=92.2

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEEEEecCC----Cccc
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGV----ANLV  193 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIVIsa~g~----p~~i  193 (272)
                      +.++.||++.|||.|.+ |++++..|...|++|+.++++.             .++.+.+++||+|+.+++.    .+++
T Consensus       140 ~~~l~g~tvGIIG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li  218 (330)
T 4e5n_A          140 GTGLDNATVGFLGMGAI-GLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLV  218 (330)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCSTTTTTCB
T ss_pred             CCccCCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCCCHHHHHHh
Confidence            35689999999999996 9999999999999999998864             2567889999999999883    2356


Q ss_pred             cCC---CcCCCcEEEEeeeCCCCCC---CCCCCCCCceEe---cccchhh---------------hhhhceEeccCCCcc
Q 024116          194 RGS---WLKPGAVVLDVGTCPVDVS---VDPSCEYGYRLM---GDVCYEE---------------AMRLASVITPVPGGV  249 (272)
Q Consensus       194 ~~~---~vk~g~vviDig~~~~~~~---~~~~~~~~~k~~---Gdvd~~~---------------~~~~~~~~tpvpGGv  249 (272)
                      ..+   .+|+|+++||++.-..-+.   .+...  .+++.   =||-..+               ..-..-.+||=.+|.
T Consensus       219 ~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~--~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~  296 (330)
T 4e5n_A          219 NAELLALVRPGALLVNPCRGSVVDEAAVLAALE--RGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSA  296 (330)
T ss_dssp             CHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH--HTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTC
T ss_pred             CHHHHhhCCCCcEEEECCCCchhCHHHHHHHHH--hCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCC
Confidence            544   4689999999986543110   00000  01221   2332111               111256789988988


Q ss_pred             cHHHHHHHHHHHHHHHHHHh
Q 024116          250 GPMTVAMLLSNTLDSAKRAY  269 (272)
Q Consensus       250 Gp~T~amL~~n~v~a~~~~~  269 (272)
                      -.-+..-+...+++..++++
T Consensus       297 t~e~~~~~~~~~~~ni~~~~  316 (330)
T 4e5n_A          297 VRAVRLEIERCAAQNILQAL  316 (330)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            87666666666666665554

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=98.17  E-value=2.3e-06  Score=78.21  Aligned_cols=134  Identities=20%  Similarity=0.215  Sum_probs=92.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------CCHhhhcCCCcEEEEecCCC----ccccC---CC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------KNPEQITSEADIVIAAAGVA----NLVRG---SW  197 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------~~l~~~l~~ADIVIsa~g~p----~~i~~---~~  197 (272)
                      .++.||++.|||.|.+ |+.++..|...|++|++++++.       .++.+.+++||+|+.+++..    +++++   ..
T Consensus       140 ~~l~g~~vgIIG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~  218 (311)
T 2cuk_A          140 LDLQGLTLGLVGMGRI-GQAVAKRALAFGMRVVYHARTPKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFA  218 (311)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCSSSSCBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTT
T ss_pred             cCCCCCEEEEEEECHH-HHHHHHHHHHCCCEEEEECCCCcccccccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhh
Confidence            4789999999999996 9999999999999999998764       25788899999999998742    34543   35


Q ss_pred             cCCCcEEEEeeeCCCCCC---CCCCCCCCceEec---ccc--------hhhhhhhceEeccCCCcccHHHHHHHHHHHHH
Q 024116          198 LKPGAVVLDVGTCPVDVS---VDPSCEYGYRLMG---DVC--------YEEAMRLASVITPVPGGVGPMTVAMLLSNTLD  263 (272)
Q Consensus       198 vk~g~vviDig~~~~~~~---~~~~~~~~~k~~G---dvd--------~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~  263 (272)
                      +++|+++||++....-+.   .+..  . +++-|   ||-        ..-+....-.+||-.+|.-.-+..-+....++
T Consensus       219 mk~ga~lin~srg~~vd~~aL~~aL--~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~  295 (311)
T 2cuk_A          219 MKRGAILLNTARGALVDTEALVEAL--R-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVE  295 (311)
T ss_dssp             SCTTCEEEECSCGGGBCHHHHHHHH--T-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCccCHHHHHHHH--h-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHHHHHHHHHHH
Confidence            689999999997653210   0000  0 11211   221        11122246778999998877766666666666


Q ss_pred             HHHHHh
Q 024116          264 SAKRAY  269 (272)
Q Consensus       264 a~~~~~  269 (272)
                      ..++++
T Consensus       296 nl~~~~  301 (311)
T 2cuk_A          296 NLLAVL  301 (311)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555554

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=98.16  E-value=3.7e-06  Score=77.14  Aligned_cols=134  Identities=13%  Similarity=0.076  Sum_probs=88.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC-CC-------------CCHhhhcCCCcEEEEecCC-C---ccc
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA-LT-------------KNPEQITSEADIVIAAAGV-A---NLV  193 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~-~t-------------~~l~~~l~~ADIVIsa~g~-p---~~i  193 (272)
                      .++.|+++.|||.|.+ |+.++..|...|++|+++++ +.             .++.+.+++||+|+.+++. |   +++
T Consensus       142 ~~l~g~~vgIIG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i  220 (320)
T 1gdh_A          142 EKLDNKTLGIYGFGSI-GQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF  220 (320)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCB
T ss_pred             cCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhc
Confidence            4689999999999996 99999999999999999988 43             2577888999999999883 2   355


Q ss_pred             cC---CCcCCCcEEEEeeeCCCCCCCCCCCC--CCceEec---cc-------chhhhhhhceEeccCCCcccHHHHHHHH
Q 024116          194 RG---SWLKPGAVVLDVGTCPVDVSVDPSCE--YGYRLMG---DV-------CYEEAMRLASVITPVPGGVGPMTVAMLL  258 (272)
Q Consensus       194 ~~---~~vk~g~vviDig~~~~~~~~~~~~~--~~~k~~G---dv-------d~~~~~~~~~~~tpvpGGvGp~T~amL~  258 (272)
                      ..   +.+++|+++||++....-+. +....  ..+++-|   ||       +..-+....-.+||-.+|.-.-+..-+.
T Consensus       221 ~~~~l~~mk~gailIn~arg~~vd~-~aL~~aL~~g~i~gA~lDv~~~eP~~~~~L~~~~nviltPH~~~~t~~~~~~~~  299 (320)
T 1gdh_A          221 NKATIKSLPQGAIVVNTARGDLVDN-ELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMA  299 (320)
T ss_dssp             SHHHHTTSCTTEEEEECSCGGGBCH-HHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTCBHHHHHHHH
T ss_pred             CHHHHhhCCCCcEEEECCCCcccCH-HHHHHHHHhCCCcEEEEeCCCCCCCCCChhhhCCCEEECCcCCcCcHHHHHHHH
Confidence            44   46799999999997643100 00000  0122322   22       1111223456789999988766544444


Q ss_pred             HHHHHHHHHH
Q 024116          259 SNTLDSAKRA  268 (272)
Q Consensus       259 ~n~v~a~~~~  268 (272)
                      ... +..+++
T Consensus       300 ~~~-~nl~~~  308 (320)
T 1gdh_A          300 HQA-NDLIDA  308 (320)
T ss_dssp             HHH-HHHHHH
T ss_pred             HHH-HHHHHH
Confidence            444 444433

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=98.16  E-value=2.8e-06  Score=77.76  Aligned_cols=136  Identities=15%  Similarity=0.167  Sum_probs=91.7

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------CHhhhcCCCcEEEEecCC-C---cccc
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NPEQITSEADIVIAAAGV-A---NLVR  194 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~------------~l~~~l~~ADIVIsa~g~-p---~~i~  194 (272)
                      +.++.||++.|||.|.+ |++++..|...|++|++++++..            ++.+.+++||+|+.+++. +   ++++
T Consensus       137 ~~~l~g~~vgIIG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvVvl~~P~~~~t~~li~  215 (313)
T 2ekl_A          137 GLELAGKTIGIVGFGRI-GTKVGIIANAMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIID  215 (313)
T ss_dssp             CCCCTTCEEEEESCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTSCCSBC
T ss_pred             CCCCCCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEECCCcchhHHHhcCceecCHHHHHhhCCEEEEeccCChHHHHhhC
Confidence            45799999999999996 99999999999999999987642            466888999999999883 2   3564


Q ss_pred             CC---CcCCCcEEEEeeeCCCCCCCCCCCC--CCceEec---cc-------ch---hhhhhhceEeccCCCcccHHHHHH
Q 024116          195 GS---WLKPGAVVLDVGTCPVDVSVDPSCE--YGYRLMG---DV-------CY---EEAMRLASVITPVPGGVGPMTVAM  256 (272)
Q Consensus       195 ~~---~vk~g~vviDig~~~~~~~~~~~~~--~~~k~~G---dv-------d~---~~~~~~~~~~tpvpGGvGp~T~am  256 (272)
                      .+   .+++|+++||++....-+. +....  ..+++-|   ||       +.   .-.....-.+||-.+|.-.-+..-
T Consensus       216 ~~~l~~mk~ga~lIn~arg~~vd~-~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~~~L~~~~nviltPH~~~~t~~~~~~  294 (313)
T 2ekl_A          216 YPQFELMKDNVIIVNTSRAVAVNG-KALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKR  294 (313)
T ss_dssp             HHHHHHSCTTEEEEESSCGGGBCH-HHHHHHHHTTCEEEEEESCCSSSSCCSHHHHHHHHSTTEEECCSCTTCSHHHHHH
T ss_pred             HHHHhcCCCCCEEEECCCCcccCH-HHHHHHHHcCCCcEEEEecCCCCCCCCcccchHhhCCCEEECCccCcCcHHHHHH
Confidence            43   4689999999997653210 00000  0123322   33       11   112224567899999887766655


Q ss_pred             HHHHHHHHHHHH
Q 024116          257 LLSNTLDSAKRA  268 (272)
Q Consensus       257 L~~n~v~a~~~~  268 (272)
                      +....++..+++
T Consensus       295 ~~~~~~~n~~~~  306 (313)
T 2ekl_A          295 VAEMTTQNLLNA  306 (313)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            555555555544

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=98.14  E-value=2.7e-06  Score=78.53  Aligned_cols=135  Identities=16%  Similarity=0.156  Sum_probs=91.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------CHhhhcCCCcEEEEecCCC----ccccCC-
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------NPEQITSEADIVIAAAGVA----NLVRGS-  196 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~----------~l~~~l~~ADIVIsa~g~p----~~i~~~-  196 (272)
                      .++.||++.|||.|.+ |+.+++.|...|++|++++++..          ++.+.+++||+|+.+++..    ++++.+ 
T Consensus       141 ~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~  219 (333)
T 1dxy_A          141 KELGQQTVGVMGTGHI-GQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAA  219 (333)
T ss_dssp             CCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHH
T ss_pred             cCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCcchhhHhccccCCHHHHHhcCCEEEEcCCCchhHHHHhCHHH
Confidence            5789999999999996 99999999999999999987642          5778899999999998842    356543 


Q ss_pred             --CcCCCcEEEEeeeCCCCCCCCCCCC--CCceEe---cccchhh--------------------hhh-hceEeccCCCc
Q 024116          197 --WLKPGAVVLDVGTCPVDVSVDPSCE--YGYRLM---GDVCYEE--------------------AMR-LASVITPVPGG  248 (272)
Q Consensus       197 --~vk~g~vviDig~~~~~~~~~~~~~--~~~k~~---Gdvd~~~--------------------~~~-~~~~~tpvpGG  248 (272)
                        .+|+|+++||++....-+. +....  ..+++-   =||-..+                    +.. ..-.+||=.+|
T Consensus       220 l~~mk~ga~lIn~srg~~vd~-~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~TPHia~  298 (333)
T 1dxy_A          220 FNLMKPGAIVINTARPNLIDT-QAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAY  298 (333)
T ss_dssp             HHHSCTTEEEEECSCTTSBCH-HHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTT
T ss_pred             HhhCCCCcEEEECCCCcccCH-HHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEEECCcccc
Confidence              4689999999997654210 00000  012333   2442211                    111 25678888888


Q ss_pred             ccHHHHHHHHHHHHHHHHHH
Q 024116          249 VGPMTVAMLLSNTLDSAKRA  268 (272)
Q Consensus       249 vGp~T~amL~~n~v~a~~~~  268 (272)
                      .-.-+..-+...+++..+++
T Consensus       299 ~t~e~~~~~~~~~~~nl~~~  318 (333)
T 1dxy_A          299 YTETAVHNMVYFSLQHLVDF  318 (333)
T ss_dssp             CSHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHH
Confidence            87766555555555555544

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=98.14  E-value=3e-06  Score=77.30  Aligned_cols=135  Identities=17%  Similarity=0.180  Sum_probs=93.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------CHhhhcCCCcEEEEecCC-C---ccccC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NPEQITSEADIVIAAAGV-A---NLVRG  195 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~------------~l~~~l~~ADIVIsa~g~-p---~~i~~  195 (272)
                      .++.|+++.|||.|.+ |++++..|...|++|++++++..            ++.+.+++||+|+.+++. +   +++..
T Consensus       138 ~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~  216 (307)
T 1wwk_A          138 IELEGKTIGIIGFGRI-GYQVAKIANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINE  216 (307)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCH
T ss_pred             cccCCceEEEEccCHH-HHHHHHHHHHCCCEEEEECCCCChhhHhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcCH
Confidence            4789999999999996 99999999999999999987642            467888999999999883 2   35654


Q ss_pred             C---CcCCCcEEEEeeeCCCCCC---CCCCCCCCceEe---ccc--------chhhhhhhceEeccCCCcccHHHHHHHH
Q 024116          196 S---WLKPGAVVLDVGTCPVDVS---VDPSCEYGYRLM---GDV--------CYEEAMRLASVITPVPGGVGPMTVAMLL  258 (272)
Q Consensus       196 ~---~vk~g~vviDig~~~~~~~---~~~~~~~~~k~~---Gdv--------d~~~~~~~~~~~tpvpGGvGp~T~amL~  258 (272)
                      +   .+++|+++||++....-+.   .+...  .+++-   -||        |..-+....-.+||-.+|.-.-+..-+.
T Consensus       217 ~~l~~mk~ga~lin~arg~~vd~~aL~~aL~--~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~  294 (307)
T 1wwk_A          217 ERLKLMKKTAILINTSRGPVVDTNALVKALK--EGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAG  294 (307)
T ss_dssp             HHHHHSCTTCEEEECSCGGGBCHHHHHHHHH--HTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHHHHHH
T ss_pred             HHHhcCCCCeEEEECCCCcccCHHHHHHHHH--hCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHHHHHH
Confidence            3   4689999999997653210   00000  01111   122        1111223457889999998887776677


Q ss_pred             HHHHHHHHHHh
Q 024116          259 SNTLDSAKRAY  269 (272)
Q Consensus       259 ~n~v~a~~~~~  269 (272)
                      ...++..++++
T Consensus       295 ~~~~~nl~~~~  305 (307)
T 1wwk_A          295 VEVAEKVVKIL  305 (307)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            76766666654

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=98.13  E-value=2e-05  Score=73.05  Aligned_cols=136  Identities=17%  Similarity=0.147  Sum_probs=91.5

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHH-hCCCEEEEEeCCCC--------------CHhhhcCCCcEEEEecCCC----c
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQ-RHHATVSIVHALTK--------------NPEQITSEADIVIAAAGVA----N  191 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~-~~ga~V~v~~~~t~--------------~l~~~l~~ADIVIsa~g~p----~  191 (272)
                      +.++.||++.|||.|.+ |++++..|. ..|++|++++++..              ++.+.+++||+|+.+++..    +
T Consensus       158 ~~~l~g~~vgIIG~G~I-G~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~  236 (348)
T 2w2k_A          158 AHNPRGHVLGAVGLGAI-QKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHH  236 (348)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTT
T ss_pred             CcCCCCCEEEEEEECHH-HHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHH
Confidence            46899999999999986 999999999 99999999987642              5667789999999998842    3


Q ss_pred             cccC---CCcCCCcEEEEeeeCCCCCC---CCCCCCCCceEec---ccchh------hhh-hhceEeccCCCcccHHHHH
Q 024116          192 LVRG---SWLKPGAVVLDVGTCPVDVS---VDPSCEYGYRLMG---DVCYE------EAM-RLASVITPVPGGVGPMTVA  255 (272)
Q Consensus       192 ~i~~---~~vk~g~vviDig~~~~~~~---~~~~~~~~~k~~G---dvd~~------~~~-~~~~~~tpvpGGvGp~T~a  255 (272)
                      ++..   ..+++++++||++.-...+.   .+...  .+++.|   ||-..      .+. -..-.+||-.+|.-.-+..
T Consensus       237 li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~--~~~i~gaglDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~  314 (348)
T 2w2k_A          237 LIDEAFFAAMKPGSRIVNTARGPVISQDALIAALK--SGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFH  314 (348)
T ss_dssp             CBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH--TTSEEEEEESSCTTTTSCCHHHHTSSSEEECCSCTTCSHHHHH
T ss_pred             HhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHH--hCCceEEEeccCCCCCCCCchhhcCCCEEEcCcCCCCCHHHHH
Confidence            4543   34689999999987643200   00000  123332   33211      111 2245778888988877766


Q ss_pred             HHHHHHHHHHHHHh
Q 024116          256 MLLSNTLDSAKRAY  269 (272)
Q Consensus       256 mL~~n~v~a~~~~~  269 (272)
                      -+...+++..++|+
T Consensus       315 ~~~~~~~~ni~~~~  328 (348)
T 2w2k_A          315 EFERLTMTNIDRFL  328 (348)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            66655555555553

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=98.12  E-value=4.9e-06  Score=77.70  Aligned_cols=81  Identities=25%  Similarity=0.322  Sum_probs=67.2

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCCC--------------CCHhhhcCCCcEEEEecCCC----c
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALT--------------KNPEQITSEADIVIAAAGVA----N  191 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~-V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p----~  191 (272)
                      +.++.||++.|||.|.+ |++++..|...|++ |++++++.              .++.+.+++||+|+.+++..    +
T Consensus       159 ~~~l~g~tvgIIG~G~I-G~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~  237 (364)
T 2j6i_A          159 AYDIEGKTIATIGAGRI-GYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKG  237 (364)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTT
T ss_pred             cccCCCCEEEEECcCHH-HHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHH
Confidence            46799999999999996 99999999999996 99998653              25778899999999999843    4


Q ss_pred             cccC---CCcCCCcEEEEeeeCCC
Q 024116          192 LVRG---SWLKPGAVVLDVGTCPV  212 (272)
Q Consensus       192 ~i~~---~~vk~g~vviDig~~~~  212 (272)
                      +++.   ..+++++++||++....
T Consensus       238 li~~~~l~~mk~ga~lIn~arG~~  261 (364)
T 2j6i_A          238 LINKELLSKFKKGAWLVNTARGAI  261 (364)
T ss_dssp             CBCHHHHTTSCTTEEEEECSCGGG
T ss_pred             HhCHHHHhhCCCCCEEEECCCCch
Confidence            5654   35689999999997653

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.09  E-value=1.1e-05  Score=73.78  Aligned_cols=76  Identities=22%  Similarity=0.334  Sum_probs=62.1

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhC-C-CEEEEEeCCC------------------CCHhhhcCCCcEEEEecCCCc-c
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRH-H-ATVSIVHALT------------------KNPEQITSEADIVIAAAGVAN-L  192 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~-g-a~V~v~~~~t------------------~~l~~~l~~ADIVIsa~g~p~-~  192 (272)
                      -..++++|||.|.. |+..+..|... + .+|++++|+.                  -++++.+++|||||++|+.+. +
T Consensus       119 ~~~~~v~iIGaG~~-a~~~~~al~~~~~~~~V~v~~r~~a~~la~~l~~~~g~~~~~~~~~eav~~aDIVi~aT~s~~pv  197 (313)
T 3hdj_A          119 PRSSVLGLFGAGTQ-GAEHAAQLSARFALEAILVHDPYASPEILERIGRRCGVPARMAAPADIAAQADIVVTATRSTTPL  197 (313)
T ss_dssp             TTCCEEEEECCSHH-HHHHHHHHHHHSCCCEEEEECTTCCHHHHHHHHHHHTSCEEECCHHHHHHHCSEEEECCCCSSCS
T ss_pred             CCCcEEEEECccHH-HHHHHHHHHHhCCCcEEEEECCcHHHHHHHHHHHhcCCeEEEeCHHHHHhhCCEEEEccCCCCcc
Confidence            36799999999996 99999988763 4 5899999871                  033456678999999999765 4


Q ss_pred             ccCCCcCCCcEEEEeeeC
Q 024116          193 VRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       193 i~~~~vk~g~vviDig~~  210 (272)
                      ++.+|+++|++|+|+|..
T Consensus       198 l~~~~l~~G~~V~~vGs~  215 (313)
T 3hdj_A          198 FAGQALRAGAFVGAIGSS  215 (313)
T ss_dssp             SCGGGCCTTCEEEECCCS
T ss_pred             cCHHHcCCCcEEEECCCC
Confidence            788999999999999976

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=98.09  E-value=3.7e-06  Score=77.51  Aligned_cols=136  Identities=17%  Similarity=0.235  Sum_probs=91.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------CHhhhcCCCcEEEEecCC-C---ccccCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------NPEQITSEADIVIAAAGV-A---NLVRGS  196 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-----------~l~~~l~~ADIVIsa~g~-p---~~i~~~  196 (272)
                      .++.|+++.|||.|.+ |+.+++.|...|++|++++++..           ++.+.+++||+|+.+++. +   ++++.+
T Consensus       142 ~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~  220 (333)
T 1j4a_A          142 REVRDQVVGVVGTGHI-GQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDE  220 (333)
T ss_dssp             CCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHH
T ss_pred             ccCCCCEEEEEccCHH-HHHHHHHHHHCCCEEEEECCCcchhHHhhCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHH
Confidence            4689999999999996 99999999999999999987642           677888999999999883 2   345443


Q ss_pred             ---CcCCCcEEEEeeeCCCCCCCCCCCC--CCceEec---ccchhh--------------------h-hhhceEeccCCC
Q 024116          197 ---WLKPGAVVLDVGTCPVDVSVDPSCE--YGYRLMG---DVCYEE--------------------A-MRLASVITPVPG  247 (272)
Q Consensus       197 ---~vk~g~vviDig~~~~~~~~~~~~~--~~~k~~G---dvd~~~--------------------~-~~~~~~~tpvpG  247 (272)
                         .+++|+++||++.-..-+. +....  ..+++-|   ||-..+                    + .-..-.+||=.+
T Consensus       221 ~l~~mk~ga~lIn~arg~~vd~-~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilTPHia  299 (333)
T 1j4a_A          221 SIAKMKQDVVIVNVSRGPLVDT-DAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTA  299 (333)
T ss_dssp             HHHHSCTTEEEEECSCGGGBCH-HHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCT
T ss_pred             HHhhCCCCcEEEECCCCcccCH-HHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEECCccc
Confidence               4689999999987653210 00000  0112221   221111                    1 112457899889


Q ss_pred             cccHHHHHHHHHHHHHHHHHHh
Q 024116          248 GVGPMTVAMLLSNTLDSAKRAY  269 (272)
Q Consensus       248 GvGp~T~amL~~n~v~a~~~~~  269 (272)
                      |.-.-+..-+...+++..++++
T Consensus       300 ~~t~~~~~~~~~~~~~nl~~~~  321 (333)
T 1j4a_A          300 FYTTHAVRNMVVKAFDNNLELV  321 (333)
T ss_dssp             TCBHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHH
Confidence            8887776666666666665554

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=98.08  E-value=4.4e-06  Score=77.17  Aligned_cols=136  Identities=20%  Similarity=0.255  Sum_probs=89.6

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------CCHhhhcCCCcEEEEecCCC----ccccCC-
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGVA----NLVRGS-  196 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t---------~~l~~~l~~ADIVIsa~g~p----~~i~~~-  196 (272)
                      +.++.||++.|||.|.+ |++++..|...|++|++++++.         .++.+.+++||+|+.+++..    +++..+ 
T Consensus       159 ~~~l~g~~vgIIG~G~i-G~~vA~~l~~~G~~V~~~dr~~~~~~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~  237 (333)
T 3ba1_A          159 TTKFSGKRVGIIGLGRI-GLAVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREV  237 (333)
T ss_dssp             CCCCTTCCEEEECCSHH-HHHHHHHHHTTTCCEEEECSSCCTTCCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHH
T ss_pred             ccccCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEECCCchhccCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHH
Confidence            35789999999999986 9999999999999999998764         35778899999999999842    345443 


Q ss_pred             --CcCCCcEEEEeeeCCCCCC---CCCCCCCCceE---ecccch------hhhhh-hceEeccCCCcccHHHHHHHHHHH
Q 024116          197 --WLKPGAVVLDVGTCPVDVS---VDPSCEYGYRL---MGDVCY------EEAMR-LASVITPVPGGVGPMTVAMLLSNT  261 (272)
Q Consensus       197 --~vk~g~vviDig~~~~~~~---~~~~~~~~~k~---~Gdvd~------~~~~~-~~~~~tpvpGGvGp~T~amL~~n~  261 (272)
                        .+++++++||++.-...+.   .+...  .+++   .=||-.      ..+.+ ..-.+||=.||.-.-+..-+....
T Consensus       238 l~~mk~gailIn~srG~~vd~~aL~~aL~--~g~i~ga~lDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~~~~~~  315 (333)
T 3ba1_A          238 IDALGPKGVLINIGRGPHVDEPELVSALV--EGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLV  315 (333)
T ss_dssp             HHHHCTTCEEEECSCGGGBCHHHHHHHHH--HTSSCEEEESCCTTTTCCCGGGGGCTTEEECSSCTTCSHHHHHHHHHHH
T ss_pred             HhcCCCCCEEEECCCCchhCHHHHHHHHH--cCCCeEEEEecCCCCCCCcchhhcCCCEEECCcCCCCCHHHHHHHHHHH
Confidence              3588999999986643210   00000  0111   113311      11111 244678888888776666555555


Q ss_pred             HHHHHHHh
Q 024116          262 LDSAKRAY  269 (272)
Q Consensus       262 v~a~~~~~  269 (272)
                      ++..++++
T Consensus       316 ~~nl~~~~  323 (333)
T 3ba1_A          316 VGNLEAHF  323 (333)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555443

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=98.07  E-value=5.1e-06  Score=77.21  Aligned_cols=136  Identities=15%  Similarity=0.180  Sum_probs=91.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEEEEecCC-C---cccc
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGV-A---NLVR  194 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIVIsa~g~-p---~~i~  194 (272)
                      .++.||++.|||.|.+ |++++..|...|++|++++++.             .++.+.+++||+|+.+++. +   +++.
T Consensus       164 ~~l~g~tvGIIG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~  242 (347)
T 1mx3_A          164 ARIRGETLGIIGLGRV-GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN  242 (347)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBS
T ss_pred             cCCCCCEEEEEeECHH-HHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhH
Confidence            4789999999999996 9999999999999999998753             2577888999999998874 2   3454


Q ss_pred             C---CCcCCCcEEEEeeeCCCCCCCCCCCC--CCceEec---ccch--------hhhh-hhceEeccCCCcccHHHHHHH
Q 024116          195 G---SWLKPGAVVLDVGTCPVDVSVDPSCE--YGYRLMG---DVCY--------EEAM-RLASVITPVPGGVGPMTVAML  257 (272)
Q Consensus       195 ~---~~vk~g~vviDig~~~~~~~~~~~~~--~~~k~~G---dvd~--------~~~~-~~~~~~tpvpGGvGp~T~amL  257 (272)
                      .   ..+|+|+++||++.....+. +....  ..+++.|   ||-.        ..+. -..-.+||-.+|...-+..-+
T Consensus       243 ~~~l~~mk~gailIN~arg~~vd~-~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~~t~~~~~~~  321 (347)
T 1mx3_A          243 DFTVKQMRQGAFLVNTARGGLVDE-KALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEM  321 (347)
T ss_dssp             HHHHTTSCTTEEEEECSCTTSBCH-HHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTTCCHHHHHHH
T ss_pred             HHHHhcCCCCCEEEECCCChHHhH-HHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHHHHHHHHHHH
Confidence            4   35689999999997754210 00000  0112221   2210        0011 125677888888887777666


Q ss_pred             HHHHHHHHHHHh
Q 024116          258 LSNTLDSAKRAY  269 (272)
Q Consensus       258 ~~n~v~a~~~~~  269 (272)
                      ...+++..++|+
T Consensus       322 ~~~~~~ni~~~~  333 (347)
T 1mx3_A          322 REEAAREIRRAI  333 (347)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666666553

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=98.06  E-value=3.3e-05  Score=75.42  Aligned_cols=136  Identities=20%  Similarity=0.231  Sum_probs=92.4

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------CCHhhhcCCCcEEEEecCCC----cccc
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGVA----NLVR  194 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t------------~~l~~~l~~ADIVIsa~g~p----~~i~  194 (272)
                      +.++.||++.|||.|.+ |++++..|...|++|+.++++.            .++.+.+++||+|+.+++..    +++.
T Consensus       137 ~~~l~g~~vgIIG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~e~~~~aDvV~l~~P~~~~t~~~i~  215 (529)
T 1ygy_A          137 GTEIFGKTVGVVGLGRI-GQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLID  215 (529)
T ss_dssp             BCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBC
T ss_pred             ccccCCCEEEEEeeCHH-HHHHHHHHHhCCCEEEEECCCCChhHHHhcCcEEcCHHHHHhcCCEEEECCCCchHHHHHhC
Confidence            35789999999999986 9999999999999999998753            14667889999999999843    3454


Q ss_pred             C---CCcCCCcEEEEeeeCCCCCCCCCCC--C--CCceEec---cc-------chhhhhhhceEeccCCCcccHHHHHHH
Q 024116          195 G---SWLKPGAVVLDVGTCPVDVSVDPSC--E--YGYRLMG---DV-------CYEEAMRLASVITPVPGGVGPMTVAML  257 (272)
Q Consensus       195 ~---~~vk~g~vviDig~~~~~~~~~~~~--~--~~~k~~G---dv-------d~~~~~~~~~~~tpvpGGvGp~T~amL  257 (272)
                      .   ..+++|++++|++.-..-   +...  .  ..+++.|   ||       |..-+....-.+||-+||.-+-+...+
T Consensus       216 ~~~~~~~k~g~ilin~arg~iv---~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~~  292 (529)
T 1ygy_A          216 KEALAKTKPGVIIVNAARGGLV---DEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRA  292 (529)
T ss_dssp             HHHHTTSCTTEEEEECSCTTSB---CHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHHH
T ss_pred             HHHHhCCCCCCEEEECCCCchh---hHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHHH
Confidence            4   357899999999954321   1100  0  0122211   22       111122235568999999888777766


Q ss_pred             HHHHHHHHHHHhC
Q 024116          258 LSNTLDSAKRAYG  270 (272)
Q Consensus       258 ~~n~v~a~~~~~~  270 (272)
                      ....++....|++
T Consensus       293 ~~~~~~~l~~~l~  305 (529)
T 1ygy_A          293 GTDVAESVRLALA  305 (529)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc
Confidence            6666666655554

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=98.02  E-value=8.9e-06  Score=76.83  Aligned_cols=135  Identities=15%  Similarity=0.160  Sum_probs=89.9

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCC-C---cc
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGV-A---NL  192 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~-p---~~  192 (272)
                      +.++.||++.|||.|.+ |+.+++.|...|++|+.++++.              .++.+.+++||+|+.+++. |   ++
T Consensus       186 ~~~l~gktvGIIGlG~I-G~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~l  264 (393)
T 2nac_A          186 AYDLEAMHVGTVAAGRI-GLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHM  264 (393)
T ss_dssp             CCCCTTCEEEEECCSHH-HHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTC
T ss_pred             CccCCCCEEEEEeECHH-HHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHH
Confidence            45789999999999996 9999999999999999998752              2577889999999999883 2   45


Q ss_pred             ccC---CCcCCCcEEEEeeeCCCCCC---CCCCCCCCceEe---cccchhh--------hhhhceEeccCCCcccHHHHH
Q 024116          193 VRG---SWLKPGAVVLDVGTCPVDVS---VDPSCEYGYRLM---GDVCYEE--------AMRLASVITPVPGGVGPMTVA  255 (272)
Q Consensus       193 i~~---~~vk~g~vviDig~~~~~~~---~~~~~~~~~k~~---Gdvd~~~--------~~~~~~~~tpvpGGvGp~T~a  255 (272)
                      ++.   ..+|+|+++||++.-..-+.   .+...  .+++-   -||-..+        ..-..-.+||=.+|.-.-+..
T Consensus       265 i~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~--~g~i~gA~lDV~~~EP~~~~~pL~~~~nvilTPHia~~T~e~~~  342 (393)
T 2nac_A          265 INDETLKLFKRGAYIVNTARGKLCDRDAVARALE--SGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQA  342 (393)
T ss_dssp             BSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH--TTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTTCSHHHHH
T ss_pred             hhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHH--cCCeeEEEEEecCCCCCCCCChhHcCCCEEECCCCCcCcHHHHH
Confidence            653   35689999999996643210   00000  12232   2332111        111245688888888766665


Q ss_pred             HHHHHHHHHHHHH
Q 024116          256 MLLSNTLDSAKRA  268 (272)
Q Consensus       256 mL~~n~v~a~~~~  268 (272)
                      -+...+++..++|
T Consensus       343 ~~~~~~~~nl~~~  355 (393)
T 2nac_A          343 RYAAGTREILECF  355 (393)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555554444

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=98.01  E-value=8e-06  Score=77.36  Aligned_cols=81  Identities=20%  Similarity=0.309  Sum_probs=67.4

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------CCHhhhcCCCcEEEEecCCC----ccccCC
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------KNPEQITSEADIVIAAAGVA----NLVRGS  196 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t----------~~l~~~l~~ADIVIsa~g~p----~~i~~~  196 (272)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.++++.          .++.+.+++||+|+..++..    +++..+
T Consensus       140 ~~el~gktlGiIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~  218 (404)
T 1sc6_A          140 SFEARGKKLGIIGYGHI-GTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAK  218 (404)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHH
T ss_pred             ccccCCCEEEEEeECHH-HHHHHHHHHHCCCEEEEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHH
Confidence            46899999999999996 9999999999999999998742          36788999999999998842    356544


Q ss_pred             ---CcCCCcEEEEeeeCCC
Q 024116          197 ---WLKPGAVVLDVGTCPV  212 (272)
Q Consensus       197 ---~vk~g~vviDig~~~~  212 (272)
                         .+|+|+++||++.-..
T Consensus       219 ~l~~mk~ga~lIN~aRg~~  237 (404)
T 1sc6_A          219 EISLMKPGSLLINASRGTV  237 (404)
T ss_dssp             HHHHSCTTEEEEECSCSSS
T ss_pred             HHhhcCCCeEEEECCCChH
Confidence               4589999999997653

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=98.00  E-value=9.5e-06  Score=74.72  Aligned_cols=136  Identities=18%  Similarity=0.166  Sum_probs=90.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------CHhhhcCCCcEEEEecCCC----ccccC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NPEQITSEADIVIAAAGVA----NLVRG  195 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~------------~l~~~l~~ADIVIsa~g~p----~~i~~  195 (272)
                      .++.|+++.|||.|.+ |++++..|...|++|++++++..            ++.+.+++||+|+.+++..    +++..
T Consensus       146 ~~l~g~~vgIIG~G~i-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~~~l~~aDvVil~vp~~~~t~~~i~~  224 (334)
T 2dbq_A          146 YDVYGKTIGIIGLGRI-GQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINE  224 (334)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCEECCHHHHHHHCSEEEECCCCCTTTTTCBCH
T ss_pred             cCCCCCEEEEEccCHH-HHHHHHHHHhCCCEEEEECCCcchhhHhhcCcccCCHHHHHhhCCEEEECCCCChHHHHhhCH
Confidence            5789999999999886 99999999999999999987642            4667789999999999843    34543


Q ss_pred             ---CCcCCCcEEEEeeeCCCCCCCCCCCC--CCceEec---ccch-------hhhhhhceEeccCCCcccHHHHHHHHHH
Q 024116          196 ---SWLKPGAVVLDVGTCPVDVSVDPSCE--YGYRLMG---DVCY-------EEAMRLASVITPVPGGVGPMTVAMLLSN  260 (272)
Q Consensus       196 ---~~vk~g~vviDig~~~~~~~~~~~~~--~~~k~~G---dvd~-------~~~~~~~~~~tpvpGGvGp~T~amL~~n  260 (272)
                         ..+++++++||++.-..-+. +....  ..+++.|   ||-.       .-.....-.+||-.||.-.-+..-+...
T Consensus       225 ~~~~~mk~~ailIn~srg~~v~~-~aL~~aL~~~~i~ga~lDv~~~EP~~~~~L~~~~~vi~tPh~~~~t~~~~~~~~~~  303 (334)
T 2dbq_A          225 ERLKLMKKTAILINIARGKVVDT-NALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAREGMAEL  303 (334)
T ss_dssp             HHHHHSCTTCEEEECSCGGGBCH-HHHHHHHHHTSSSEEEESCCSSSSCCCHHHHHCTTEEECSSCTTCSHHHHHHHHHH
T ss_pred             HHHhcCCCCcEEEECCCCcccCH-HHHHHHHHhCCeeEEEecCCCCCCCCCchhhcCCCEEECCccCCCcHHHHHHHHHH
Confidence               34689999999985543210 00000  0012222   3211       1112234677888898877766666666


Q ss_pred             HHHHHHHHh
Q 024116          261 TLDSAKRAY  269 (272)
Q Consensus       261 ~v~a~~~~~  269 (272)
                      +++..++++
T Consensus       304 ~~~n~~~~~  312 (334)
T 2dbq_A          304 VAKNLIAFK  312 (334)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666665554

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=97.99  E-value=2.8e-05  Score=70.78  Aligned_cols=77  Identities=18%  Similarity=0.330  Sum_probs=62.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhC-CC-EEEEEeCCC-----------------CCHhhhcCCCcEEEEecCCCc-c
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRH-HA-TVSIVHALT-----------------KNPEQITSEADIVIAAAGVAN-L  192 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~-ga-~V~v~~~~t-----------------~~l~~~l~~ADIVIsa~g~p~-~  192 (272)
                      ....+++.|||.|.+ |++++..|... |. +|++++|+.                 .++++.++++|+||++|+... +
T Consensus       132 ~~~~~~igiIG~G~~-g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~~~v  210 (312)
T 2i99_A          132 PPSSEVLCILGAGVQ-AYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLATEPI  210 (312)
T ss_dssp             CTTCCEEEEECCSHH-HHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCSSCC
T ss_pred             CCCCcEEEEECCcHH-HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCCCcc
Confidence            567899999999996 99999998775 76 899998762                 245677889999999998543 4


Q ss_pred             ccCCCcCCCcEEEEeeeC
Q 024116          193 VRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       193 i~~~~vk~g~vviDig~~  210 (272)
                      +..+++++|.+|+|++..
T Consensus       211 ~~~~~l~~g~~vi~~g~~  228 (312)
T 2i99_A          211 LFGEWVKPGAHINAVGAS  228 (312)
T ss_dssp             BCGGGSCTTCEEEECCCC
T ss_pred             cCHHHcCCCcEEEeCCCC
Confidence            666899999999999644

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.98  E-value=3.1e-05  Score=71.94  Aligned_cols=88  Identities=11%  Similarity=0.146  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHh-CC-CEEEEEeCCC---------------------CCHhhh
Q 024116          120 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR-HH-ATVSIVHALT---------------------KNPEQI  176 (272)
Q Consensus       120 a~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~-~g-a~V~v~~~~t---------------------~~l~~~  176 (272)
                      +.+++... +. -....+++.|||.|.. |+..+..|.. .+ .+|++++|+.                     .++++.
T Consensus       115 a~s~laa~-~l-a~~~~~~v~iIGaG~~-a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~ea  191 (350)
T 1x7d_A          115 ATSLMAAQ-AL-ARPNARKMALIGNGAQ-SEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEA  191 (350)
T ss_dssp             HHHHHHHH-HH-SCTTCCEEEEECCSTT-HHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHH
T ss_pred             HHHHHHHH-Hh-ccccCCeEEEECCcHH-HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHH
Confidence            34455444 22 2357899999999996 9998877653 44 5899998762                     245677


Q ss_pred             cCCCcEEEEecCCC---ccccCCCcCCCcEEEEeeeC
Q 024116          177 TSEADIVIAAAGVA---NLVRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       177 l~~ADIVIsa~g~p---~~i~~~~vk~g~vviDig~~  210 (272)
                      +++||+||++|+.+   .++..+|+++|..|+++|..
T Consensus       192 v~~aDiVi~aTps~~~~pvl~~~~l~~G~~V~~vgs~  228 (350)
T 1x7d_A          192 VKGVDIITTVTADKAYATIITPDMLEPGMHLNAVGGD  228 (350)
T ss_dssp             HTTCSEEEECCCCSSEEEEECGGGCCTTCEEEECSCC
T ss_pred             HhcCCEEEEeccCCCCCceecHHHcCCCCEEEECCCC
Confidence            88999999999975   24788999999999999964

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=97.98  E-value=7.2e-06  Score=75.38  Aligned_cols=79  Identities=14%  Similarity=0.235  Sum_probs=64.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------CHhhhcCCCcEEEEecCCC----cccc
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITSEADIVIAAAGVA----NLVR  194 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------~l~~~l~~ADIVIsa~g~p----~~i~  194 (272)
                      .++.|+++.|||.|.+ |++++..|...|++|++++++..             ++.+.+++||+||.+++..    +++.
T Consensus       151 ~~l~g~~vgIIG~G~i-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~e~l~~aDvVi~~vp~~~~t~~~i~  229 (330)
T 2gcg_A          151 YGLTQSTVGIIGLGRI-GQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCN  229 (330)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBS
T ss_pred             cCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeCCHHHHHhhCCEEEEeCCCChHHHHhhC
Confidence            4689999999999885 99999999999999999987542             4567789999999999843    3454


Q ss_pred             C---CCcCCCcEEEEeeeCC
Q 024116          195 G---SWLKPGAVVLDVGTCP  211 (272)
Q Consensus       195 ~---~~vk~g~vviDig~~~  211 (272)
                      .   ..+++++++||++.-.
T Consensus       230 ~~~~~~mk~gailIn~srg~  249 (330)
T 2gcg_A          230 KDFFQKMKETAVFINISRGD  249 (330)
T ss_dssp             HHHHHHSCTTCEEEECSCGG
T ss_pred             HHHHhcCCCCcEEEECCCCc
Confidence            3   2468899999998654

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.97  E-value=1.5e-07  Score=90.76  Aligned_cols=78  Identities=18%  Similarity=0.212  Sum_probs=56.4

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhC-CCEEEEEeCCCC----------------------CHhhhcCCCcEEEEec
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALTK----------------------NPEQITSEADIVIAAA  187 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~-ga~V~v~~~~t~----------------------~l~~~l~~ADIVIsa~  187 (272)
                      +.++++++|+|+|+|++ |++++..|++. +.+|++++|+..                      ++.+.++.+|+||+++
T Consensus        18 ~~~l~~k~VlIiGAGgi-G~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~t   96 (467)
T 2axq_A           18 EGRHMGKNVLLLGSGFV-AQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLI   96 (467)
T ss_dssp             -----CEEEEEECCSTT-HHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECS
T ss_pred             ccCCCCCEEEEECChHH-HHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECC
Confidence            45778999999999885 99999999998 679999998631                      2334567899999999


Q ss_pred             CCCc--cccCCCcCCCcEEEEeee
Q 024116          188 GVAN--LVRGSWLKPGAVVLDVGT  209 (272)
Q Consensus       188 g~p~--~i~~~~vk~g~vviDig~  209 (272)
                      |...  .+....++.+..++|+.+
T Consensus        97 p~~~~~~v~~a~l~~g~~vvd~~~  120 (467)
T 2axq_A           97 PYTFHPNVVKSAIRTKTDVVTSSY  120 (467)
T ss_dssp             CGGGHHHHHHHHHHHTCEEEECSC
T ss_pred             chhhhHHHHHHHHhcCCEEEEeec
Confidence            8532  133345677888999876

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.97  E-value=4.8e-06  Score=77.56  Aligned_cols=78  Identities=28%  Similarity=0.380  Sum_probs=58.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------CHhhhcCCCcEEEEecCCCc
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAGVAN  191 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~---------------------~l~~~l~~ADIVIsa~g~p~  191 (272)
                      .+++++|+|+|+|+ +|+.+++.|...|++|++++++..                     ++.+.++.+|+||+++|.+.
T Consensus       163 ~l~~~~V~ViGaG~-iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~  241 (369)
T 2eez_A          163 GVAPASVVILGGGT-VGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPG  241 (369)
T ss_dssp             BBCCCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC---
T ss_pred             CCCCCEEEEECCCH-HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCc
Confidence            37899999999977 599999999999999999987531                     23355678999999998653


Q ss_pred             -----cccCC---CcCCCcEEEEeeeCC
Q 024116          192 -----LVRGS---WLKPGAVVLDVGTCP  211 (272)
Q Consensus       192 -----~i~~~---~vk~g~vviDig~~~  211 (272)
                           ++..+   .++++.++||++...
T Consensus       242 ~~~~~li~~~~l~~mk~gg~iV~v~~~~  269 (369)
T 2eez_A          242 AKAPKLVTRDMLSLMKEGAVIVDVAVDQ  269 (369)
T ss_dssp             ----CCSCHHHHTTSCTTCEEEECC---
T ss_pred             cccchhHHHHHHHhhcCCCEEEEEecCC
Confidence                 34433   458899999999753

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.95  E-value=3.8e-05  Score=70.31  Aligned_cols=75  Identities=15%  Similarity=0.244  Sum_probs=60.6

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHh-CC-CEEEEEeCCC-------------------CCHhhhcCCCcEEEEecCCCc-
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQR-HH-ATVSIVHALT-------------------KNPEQITSEADIVIAAAGVAN-  191 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~-~g-a~V~v~~~~t-------------------~~l~~~l~~ADIVIsa~g~p~-  191 (272)
                      ...+++.|||.|.. |+..+..|.. .+ .+|++++|+.                   .++++.+ ++|+||++|+... 
T Consensus       123 ~~~~~v~iIGaG~~-a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~~~~~~e~v-~aDvVi~aTp~~~p  200 (322)
T 1omo_A          123 KNSSVFGFIGCGTQ-AYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEAS-RCDVLVTTTPSRKP  200 (322)
T ss_dssp             TTCCEEEEECCSHH-HHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHT-SSSEEEECCCCSSC
T ss_pred             CCCCEEEEEcCcHH-HHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEEECCHHHHh-CCCEEEEeeCCCCc
Confidence            46889999999996 9999988876 34 5899999863                   2345667 8999999999654 


Q ss_pred             cccCCCcCCCcEEEEeeeC
Q 024116          192 LVRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       192 ~i~~~~vk~g~vviDig~~  210 (272)
                      +++.+|+++|.+|+|+|..
T Consensus       201 v~~~~~l~~G~~V~~ig~~  219 (322)
T 1omo_A          201 VVKAEWVEEGTHINAIGAD  219 (322)
T ss_dssp             CBCGGGCCTTCEEEECSCC
T ss_pred             eecHHHcCCCeEEEECCCC
Confidence            4678899999999999633

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=97.94  E-value=1.2e-05  Score=74.12  Aligned_cols=134  Identities=16%  Similarity=0.201  Sum_probs=89.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------CHhhhcCCCcEEEEecCCC----ccccC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NPEQITSEADIVIAAAGVA----NLVRG  195 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~------------~l~~~l~~ADIVIsa~g~p----~~i~~  195 (272)
                      .++.||++.|||.|.+ |++++..|...|++|++++++..            ++.+.+++||+|+.+++..    +++..
T Consensus       142 ~~l~g~~vgIIG~G~i-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~e~l~~aDiVil~vp~~~~t~~~i~~  220 (333)
T 2d0i_A          142 ESLYGKKVGILGMGAI-GKAIARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINE  220 (333)
T ss_dssp             CCSTTCEEEEECCSHH-HHHHHHHHGGGTCEEEEECSSCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCCTTTTTSBCH
T ss_pred             CCCCcCEEEEEccCHH-HHHHHHHHHHCCCEEEEECCCcchhhhhhcCceecCHHHHHhhCCEEEEcCCCChHHHHHhCH
Confidence            5799999999999986 99999999999999999987642            4667789999999999854    34553


Q ss_pred             ---CCcCCCcEEEEeeeCCCCCCC---CCCCCCCceE---ecccch------hhhhh-h-ceEeccCCCcccHHHHHHHH
Q 024116          196 ---SWLKPGAVVLDVGTCPVDVSV---DPSCEYGYRL---MGDVCY------EEAMR-L-ASVITPVPGGVGPMTVAMLL  258 (272)
Q Consensus       196 ---~~vk~g~vviDig~~~~~~~~---~~~~~~~~k~---~Gdvd~------~~~~~-~-~~~~tpvpGGvGp~T~amL~  258 (272)
                         ..++++ ++||++.-..-+..   ....  .+++   --||--      ..+.+ . .-.+||-.+|.-.-+..-+.
T Consensus       221 ~~~~~mk~g-ilin~srg~~vd~~aL~~aL~--~~~i~gaglDv~~~EP~~~~~L~~~~~nviltPh~~~~t~~~~~~~~  297 (333)
T 2d0i_A          221 ERVKKLEGK-YLVNIGRGALVDEKAVTEAIK--QGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVG  297 (333)
T ss_dssp             HHHHHTBTC-EEEECSCGGGBCHHHHHHHHH--TTCBCEEEESCCSSSSCSCCGGGGCTTTEEECCSCTTCCHHHHHHHH
T ss_pred             HHHhhCCCC-EEEECCCCcccCHHHHHHHHH--cCCceEEEecCCCCCCCCCchHHcCCCCEEEcCccCCCcHHHHHHHH
Confidence               346889 99999865432100   0000  0111   112210      01122 2 35778888888777766666


Q ss_pred             HHHHHHHHHHh
Q 024116          259 SNTLDSAKRAY  269 (272)
Q Consensus       259 ~n~v~a~~~~~  269 (272)
                      ..+++..++++
T Consensus       298 ~~~~~n~~~~~  308 (333)
T 2d0i_A          298 FRAVENLLKVL  308 (333)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666555553

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=97.93  E-value=1.2e-05  Score=74.37  Aligned_cols=135  Identities=16%  Similarity=0.162  Sum_probs=92.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-----------CCHhhhcCCCcEEEEecCC----CccccCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------KNPEQITSEADIVIAAAGV----ANLVRGS  196 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-----------~~l~~~l~~ADIVIsa~g~----p~~i~~~  196 (272)
                      .++.||++.|||.|.+ |+.++..+...|++|..+++..           .++.+.+++||+|+..++-    -++|+.+
T Consensus       137 ~~l~g~tvGIiG~G~I-G~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~  215 (334)
T 3kb6_A          137 RELNRLTLGVIGTGRI-GSRVAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEE  215 (334)
T ss_dssp             CCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHH
T ss_pred             ceecCcEEEEECcchH-HHHHHHhhcccCceeeecCCccchhhhhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCHH
Confidence            5788999999999996 9999999999999999888653           3678899999999988872    2467766


Q ss_pred             C---cCCCcEEEEeeeCCCCCC---CCCCCCCCceEec---ccchhh-h----------------------hhhceEecc
Q 024116          197 W---LKPGAVVLDVGTCPVDVS---VDPSCEYGYRLMG---DVCYEE-A----------------------MRLASVITP  244 (272)
Q Consensus       197 ~---vk~g~vviDig~~~~~~~---~~~~~~~~~k~~G---dvd~~~-~----------------------~~~~~~~tp  244 (272)
                      .   +|+|+++|+++--..-++   .+.+  ..+++-|   ||-..+ .                      .-..-.+||
T Consensus       216 ~l~~mk~~a~lIN~aRG~iVde~aL~~aL--~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~~~~~L~~~~nvilTP  293 (334)
T 3kb6_A          216 RISLMKDGVYLINTARGKVVDTDALYRAY--QRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITP  293 (334)
T ss_dssp             HHHHSCTTEEEEECSCGGGBCHHHHHHHH--HTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHHHHHHHTSTTEEECC
T ss_pred             HHhhcCCCeEEEecCccccccHHHHHHHH--HhCCceEEEEeCCCCCCCcccccccccccccccccchhhccCCCEEECC
Confidence            4   589999999987654210   0000  1245554   553211 0                      001346899


Q ss_pred             CCCcccHHHHHHHHHHHHHHHHHHh
Q 024116          245 VPGGVGPMTVAMLLSNTLDSAKRAY  269 (272)
Q Consensus       245 vpGGvGp~T~amL~~n~v~a~~~~~  269 (272)
                      =.||.-.-+..-+.+.+++..++++
T Consensus       294 Hia~~T~ea~~~~~~~~~~ni~~~l  318 (334)
T 3kb6_A          294 HIAYYTDKSLERIREETVKVVKAFV  318 (334)
T ss_dssp             SCTTCBHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhChHHHHHHHHHHHHHHHHHHH
Confidence            8898876665555555555555443

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=97.87  E-value=5.6e-05  Score=72.42  Aligned_cols=172  Identities=17%  Similarity=0.236  Sum_probs=120.2

Q ss_pred             hHHHHHHHHHHHHHc-CCeEEEEEcCCCC-----CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHH---HHHhcCCcc
Q 024116           22 SQTYVRNKIKACEEV-GIKSIVTEFADGC-----TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG---KILDAVSLE   92 (272)
Q Consensus        22 s~~Y~~~~~~~~~~~-Gi~~~~~~l~~~~-----~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~---~i~~~i~p~   92 (272)
                      +.-=...|...+..+ ||++.-+++....     ..+|+.+.++.+-  |++.||++     +.+...   ++++.....
T Consensus       113 gmpImeGKl~Lyk~~aGId~lPI~LD~gt~~~~~d~defve~v~~~~--P~fG~Inl-----EDf~ap~af~il~ryr~~  185 (487)
T 3nv9_A          113 GLGVMEGKALLMKYLGGIDAVPICIDSKNKEGKNDPDAVIEFVQRIQ--HTFGAINL-----EDISQPNCYKILDVLRES  185 (487)
T ss_dssp             GHHHHHHHHHHHHHHHCCEEEEEECCCBCTTSCBCHHHHHHHHHHHG--GGCSEEEE-----CSCCTTHHHHHHHHHHHH
T ss_pred             CCchhhhHHHHHHhcCCCceeeeEEeCCCccccCCHHHHHHHHHHhC--CCCCeecH-----hhcCCchHHHHHHHHHhh
Confidence            344445677777665 8998888886531     3789999999886  67888876     433332   233322211


Q ss_pred             cccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC---EEEEEeCC
Q 024116           93 KDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHAL  169 (272)
Q Consensus        93 KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga---~V~v~~~~  169 (272)
                      -|+--||          ++..+---.|..|++..++-.+.+++.-++++.|+|.+ |-.++.+|...|.   .+++|+++
T Consensus       186 ~~ipvFn----------DD~qGTA~V~lAgllnAlki~gk~l~d~riV~~GAGaA-Gigia~ll~~~G~~~~~i~l~D~~  254 (487)
T 3nv9_A          186 CDIPVWH----------DDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSS-NTTCLRLIVTAGADPKKIVMFDSK  254 (487)
T ss_dssp             CSSCEEE----------TTTHHHHHHHHHHHHHHHHHHTCCGGGCCEEEECCSHH-HHHHHHHHHHTTCCGGGEEEEETT
T ss_pred             ccCCccc----------cccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHH-HHHHHHHHHHcCCCcccEEEEecc
Confidence            1222222          12222223345778899999999999999999999987 9999999999997   69999764


Q ss_pred             ------------------------------CCCHhhhcCCCcEEEEecCC-CccccCCCcC---CCcEEEEeeeCCC
Q 024116          170 ------------------------------TKNPEQITSEADIVIAAAGV-ANLVRGSWLK---PGAVVLDVGTCPV  212 (272)
Q Consensus       170 ------------------------------t~~l~~~l~~ADIVIsa~g~-p~~i~~~~vk---~g~vviDig~~~~  212 (272)
                                                    ..+|.+.++.+|++|-..+. |+.++++|++   +.-+|+-++ ||.
T Consensus       255 Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav~~adVlIG~S~~~pg~ft~e~V~~Ma~~PIIFaLS-NPt  330 (487)
T 3nv9_A          255 GSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLISLSTPGPGVVKAEWIKSMGEKPIVFCCA-NPV  330 (487)
T ss_dssp             EECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHHTTCSEEEECCCSSCCCCCHHHHHTSCSSCEEEECC-SSS
T ss_pred             ccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHHhcCCEEEEecccCCCCCCHHHHHhhcCCCEEEECC-CCC
Confidence                                          02467888999999966633 8899999885   467888887 554

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.81  E-value=8.1e-06  Score=71.52  Aligned_cols=79  Identities=19%  Similarity=0.263  Sum_probs=56.6

Q ss_pred             HHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC-----------------------------HhhhcC
Q 024116          128 IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN-----------------------------PEQITS  178 (272)
Q Consensus       128 ~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~-----------------------------l~~~l~  178 (272)
                      ++...++.++++.|||.|.+ |.+++..|.+.|.+|++++|+...                             +.+.++
T Consensus        11 ~~~~~~~~~~kIgiIG~G~m-G~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~   89 (245)
T 3dtt_A           11 HHENLYFQGMKIAVLGTGTV-GRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAA   89 (245)
T ss_dssp             --------CCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHH
T ss_pred             cccccccCCCeEEEECCCHH-HHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHh
Confidence            45567889999999999886 999999999999999999876432                             235567


Q ss_pred             CCcEEEEecCCCcc---cc---CCCcCCCcEEEEee
Q 024116          179 EADIVIAAAGVANL---VR---GSWLKPGAVVLDVG  208 (272)
Q Consensus       179 ~ADIVIsa~g~p~~---i~---~~~vk~g~vviDig  208 (272)
                      +||+||.+++....   +.   ...+ ++.+|||++
T Consensus        90 ~aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s  124 (245)
T 3dtt_A           90 GAELVVNATEGASSIAALTAAGAENL-AGKILVDIA  124 (245)
T ss_dssp             HCSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECC
T ss_pred             cCCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECC
Confidence            89999999986542   21   2234 789999998

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.78  E-value=3.4e-05  Score=67.44  Aligned_cols=125  Identities=15%  Similarity=0.208  Sum_probs=72.1

Q ss_pred             HHHHHHHHHhC--CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-C-----------------HhhhcCCC
Q 024116          121 KGCIELLIRSG--VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-N-----------------PEQITSEA  180 (272)
Q Consensus       121 ~g~~~~l~~~~--~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-~-----------------l~~~l~~A  180 (272)
                      .|-++.++++.  ++++||+|+|||+|.+ |...+..|++.||.|+++..... .                 ..+.+..+
T Consensus        14 ~~~~~~~~~~Pifl~L~gk~VLVVGgG~v-a~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~a   92 (223)
T 3dfz_A           14 SGHIEGRHMYTVMLDLKGRSVLVVGGGTI-ATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNV   92 (223)
T ss_dssp             --------CCEEEECCTTCCEEEECCSHH-HHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSC
T ss_pred             cCcccccCccccEEEcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCC
Confidence            34455555443  4789999999999885 99999999999999999976531 1                 13567889


Q ss_pred             cEEEEecCCCcc---ccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEe-cccchhhhhhhceEeccCCCcccHHHHHH
Q 024116          181 DIVIAAAGVANL---VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLM-GDVCYEEAMRLASVITPVPGGVGPMTVAM  256 (272)
Q Consensus       181 DIVIsa~g~p~~---i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~-Gdvd~~~~~~~~~~~tpvpGGvGp~T~am  256 (272)
                      |+||.||+.+..   +... -+.+ +.|++.-+|..      +   +-+. .-++.   .+..-+++  -||-+|..+..
T Consensus        93 dLVIaAT~d~~~N~~I~~~-ak~g-i~VNvvD~p~~------~---~f~~Paiv~r---g~l~iaIS--T~G~sP~la~~  156 (223)
T 3dfz_A           93 FFIVVATNDQAVNKFVKQH-IKND-QLVNMASSFSD------G---NIQIPAQFSR---GRLSLAIS--TDGASPLLTKR  156 (223)
T ss_dssp             SEEEECCCCTHHHHHHHHH-SCTT-CEEEC-----C------C---SEECCEEEEE---TTEEEEEE--CTTSCHHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHH-HhCC-CEEEEeCCccc------C---eEEEeeEEEe---CCEEEEEE--CCCCCcHHHHH
Confidence            999999998753   3211 2333 34555545432      1   1111 11111   11223343  47899988877


Q ss_pred             HHHHHH
Q 024116          257 LLSNTL  262 (272)
Q Consensus       257 L~~n~v  262 (272)
                      |-+.+.
T Consensus       157 iR~~ie  162 (223)
T 3dfz_A          157 IKEDLS  162 (223)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            765543

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.73  E-value=3.9e-05  Score=69.82  Aligned_cols=77  Identities=18%  Similarity=0.342  Sum_probs=61.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCcc----ccC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL----VRG  195 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~~----i~~  195 (272)
                      .+.++|.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.+++||+||.+++.+..    +..
T Consensus        29 ~~~~~I~iIG~G~m-G~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~  107 (320)
T 4dll_A           29 PYARKITFLGTGSM-GLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA  107 (320)
T ss_dssp             CCCSEEEEECCTTT-HHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTT
T ss_pred             cCCCEEEEECccHH-HHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcc
Confidence            35679999999886 9999999999999999999863              3567888999999999986532    221


Q ss_pred             -C---CcCCCcEEEEeeeCC
Q 024116          196 -S---WLKPGAVVLDVGTCP  211 (272)
Q Consensus       196 -~---~vk~g~vviDig~~~  211 (272)
                       +   .++++.+|||++...
T Consensus       108 ~~~~~~l~~~~~vi~~st~~  127 (320)
T 4dll_A          108 QGVAAAMKPGSLFLDMASIT  127 (320)
T ss_dssp             TCHHHHCCTTCEEEECSCCC
T ss_pred             hhHHhhCCCCCEEEecCCCC
Confidence             2   357899999988653

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.70  E-value=3.1e-05  Score=69.05  Aligned_cols=73  Identities=15%  Similarity=0.170  Sum_probs=58.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCc----cc-c-C-
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LV-R-G-  195 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~----~i-~-~-  195 (272)
                      ++|.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.+++||+||.+++.+.    .+ . . 
T Consensus         2 ~~i~iIG~G~m-G~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~   80 (287)
T 3pef_A            2 QKFGFIGLGIM-GSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHG   80 (287)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CEEEEEeecHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcch
Confidence            68999999885 9999999999999999999874              356677889999999998653    12 1 2 


Q ss_pred             --CCcCCCcEEEEeeeC
Q 024116          196 --SWLKPGAVVLDVGTC  210 (272)
Q Consensus       196 --~~vk~g~vviDig~~  210 (272)
                        ..++++.+|||....
T Consensus        81 l~~~l~~~~~vi~~st~   97 (287)
T 3pef_A           81 VLEGIGEGRGYVDMSTV   97 (287)
T ss_dssp             HHHHCCTTCEEEECSCC
T ss_pred             HhhcCCCCCEEEeCCCC
Confidence              235789999998754

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.69  E-value=4.8e-05  Score=71.11  Aligned_cols=93  Identities=16%  Similarity=0.165  Sum_probs=63.3

Q ss_pred             cCCHHHHHH----HHHH-hCC-CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH--------------hhh
Q 024116          117 PCTPKGCIE----LLIR-SGV-EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP--------------EQI  176 (272)
Q Consensus       117 p~Ta~g~~~----~l~~-~~~-~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l--------------~~~  176 (272)
                      +.|++|+..    ++++ .+. +++||+|+|+|.|.+ |..++..|.+.|++|++++++...+              .+.
T Consensus       148 ~aTg~GV~~~~~~~~~~~~G~~~L~GktV~V~G~G~V-G~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v~~~~l  226 (364)
T 1leh_A          148 PVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNV-AKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAI  226 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGT
T ss_pred             cchhhHHHHHHHHHHHhhccccCCCcCEEEEECchHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEChHHH
Confidence            567777554    4454 466 899999999999885 9999999999999999888753222              222


Q ss_pred             c-CCCcEEEEecCCCccccCCCcCC-C-cEEEEeeeCC
Q 024116          177 T-SEADIVIAAAGVANLVRGSWLKP-G-AVVLDVGTCP  211 (272)
Q Consensus       177 l-~~ADIVIsa~g~p~~i~~~~vk~-g-~vviDig~~~  211 (272)
                      + .++||++.+. ..+.++.+.++. + .+|++.+..|
T Consensus       227 l~~~~DIvip~a-~~~~I~~~~~~~lg~~iV~e~An~p  263 (364)
T 1leh_A          227 YGVTCDIFAPCA-LGAVLNDFTIPQLKAKVIAGSADNQ  263 (364)
T ss_dssp             TTCCCSEEEECS-CSCCBSTTHHHHCCCSEECCSCSCC
T ss_pred             hccCCcEeeccc-hHHHhCHHHHHhCCCcEEEeCCCCC
Confidence            2 3889999764 344566554322 3 4555555333

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.66  E-value=8.4e-05  Score=67.45  Aligned_cols=73  Identities=22%  Similarity=0.394  Sum_probs=59.7

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCc----cc-cC--
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LV-RG--  195 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~----~i-~~--  195 (272)
                      |||-+||-|.+ |.+++..|++.|.+|+++||+.              .++.+..+++|+||+.++.+.    .+ ..  
T Consensus         4 ~kIgfIGlG~M-G~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g   82 (300)
T 3obb_A            4 KQIAFIGLGHM-GAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDG   82 (300)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSS
T ss_pred             CEEEEeeehHH-HHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhh
Confidence            68999999996 9999999999999999999873              467888999999999998654    12 22  


Q ss_pred             --CCcCCCcEEEEeeeC
Q 024116          196 --SWLKPGAVVLDVGTC  210 (272)
Q Consensus       196 --~~vk~g~vviDig~~  210 (272)
                        +.+++|.++||.+..
T Consensus        83 ~~~~~~~g~iiId~sT~   99 (300)
T 3obb_A           83 LLAHIAPGTLVLECSTI   99 (300)
T ss_dssp             STTSCCC-CEEEECSCC
T ss_pred             hhhcCCCCCEEEECCCC
Confidence              245789999999866

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.64  E-value=2.9e-05  Score=58.86  Aligned_cols=73  Identities=22%  Similarity=0.210  Sum_probs=51.8

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCCC---------------------CHhhhcCCCcEEEEecCCCcc
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK---------------------NPEQITSEADIVIAAAGVANL  192 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t~---------------------~l~~~l~~ADIVIsa~g~p~~  192 (272)
                      .+++++|+|+|. +|+.++..|.+.| .+|+++.++..                     ++.+.++++|+||+++|....
T Consensus         4 ~~~~v~I~G~G~-iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~~   82 (118)
T 3ic5_A            4 MRWNICVVGAGK-IGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFLT   82 (118)
T ss_dssp             TCEEEEEECCSH-HHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGGH
T ss_pred             CcCeEEEECCCH-HHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchhh
Confidence            468999999966 5999999999999 79999987631                     234566788999988863221


Q ss_pred             --ccCCCcCCCcEEEEee
Q 024116          193 --VRGSWLKPGAVVLDVG  208 (272)
Q Consensus       193 --i~~~~vk~g~vviDig  208 (272)
                        +-....+.|...+|+.
T Consensus        83 ~~~~~~~~~~g~~~~~~~  100 (118)
T 3ic5_A           83 PIIAKAAKAAGAHYFDLT  100 (118)
T ss_dssp             HHHHHHHHHTTCEEECCC
T ss_pred             HHHHHHHHHhCCCEEEec
Confidence              2222345566677765

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.63  E-value=4.2e-05  Score=69.22  Aligned_cols=75  Identities=17%  Similarity=0.222  Sum_probs=60.4

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCc----cc-c-
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LV-R-  194 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~----~i-~-  194 (272)
                      +-++|.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.+++||+||.+++.|.    .+ . 
T Consensus        20 ~m~~I~iIG~G~m-G~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~   98 (310)
T 3doj_A           20 HMMEVGFLGLGIM-GKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDK   98 (310)
T ss_dssp             CSCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHST
T ss_pred             cCCEEEEECccHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCc
Confidence            4578999999885 9999999999999999999873              356677889999999998753    22 1 


Q ss_pred             C---CCcCCCcEEEEeeeC
Q 024116          195 G---SWLKPGAVVLDVGTC  210 (272)
Q Consensus       195 ~---~~vk~g~vviDig~~  210 (272)
                      .   ..++++.+|||++..
T Consensus        99 ~~l~~~l~~g~~vv~~st~  117 (310)
T 3doj_A           99 GGVLEQICEGKGYIDMSTV  117 (310)
T ss_dssp             TCGGGGCCTTCEEEECSCC
T ss_pred             hhhhhccCCCCEEEECCCC
Confidence            1   246789999998864

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.62  E-value=7.4e-05  Score=67.15  Aligned_cols=72  Identities=21%  Similarity=0.258  Sum_probs=58.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCcccc------CC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANLVR------GS  196 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~~i~------~~  196 (272)
                      ++|.|||.|.+ |.+++..|++.|.+|++++++.              .++.+.++ ||+||.+++.+..+.      ..
T Consensus        16 ~~I~vIG~G~m-G~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~~~l~~   93 (296)
T 3qha_A           16 LKLGYIGLGNM-GAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVVGELAG   93 (296)
T ss_dssp             CCEEEECCSTT-HHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHHHHHHT
T ss_pred             CeEEEECcCHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHHHHHHH
Confidence            68999999885 9999999999999999999874              35667778 999999998653211      23


Q ss_pred             CcCCCcEEEEeeeC
Q 024116          197 WLKPGAVVLDVGTC  210 (272)
Q Consensus       197 ~vk~g~vviDig~~  210 (272)
                      .++++.+|||.+..
T Consensus        94 ~l~~g~ivv~~st~  107 (296)
T 3qha_A           94 HAKPGTVIAIHSTI  107 (296)
T ss_dssp             TCCTTCEEEECSCC
T ss_pred             hcCCCCEEEEeCCC
Confidence            56889999998764

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.57  E-value=8.2e-05  Score=67.29  Aligned_cols=73  Identities=15%  Similarity=0.182  Sum_probs=55.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCcc----ccC---
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL----VRG---  195 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~~----i~~---  195 (272)
                      +||-+||-|.+ |.+++..|++.|.+|++++|+.              .++.+.++++|+||+.++.+..    +..   
T Consensus         6 ~kIgfIGLG~M-G~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~   84 (297)
T 4gbj_A            6 EKIAFLGLGNL-GTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELV   84 (297)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHH
T ss_pred             CcEEEEecHHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHH
Confidence            68999999996 9999999999999999999864              3567889999999999986542    211   


Q ss_pred             CCcCCCcEEEEeeeC
Q 024116          196 SWLKPGAVVLDVGTC  210 (272)
Q Consensus       196 ~~vk~g~vviDig~~  210 (272)
                      ...+++.++||.+..
T Consensus        85 ~~~~~~~iiid~sT~   99 (297)
T 4gbj_A           85 EKLGKDGVHVSMSTI   99 (297)
T ss_dssp             HHHCTTCEEEECSCC
T ss_pred             hhcCCCeEEEECCCC
Confidence            134678888888764

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.57  E-value=4.5e-05  Score=67.99  Aligned_cols=73  Identities=19%  Similarity=0.234  Sum_probs=58.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCc----cc-c-C-
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LV-R-G-  195 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~----~i-~-~-  195 (272)
                      ++|.|||.|.+ |.+++..|.+.|.+|++++|+.              .++.+.+++||+||.+++.+.    .+ . . 
T Consensus         2 ~~I~iiG~G~m-G~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~   80 (287)
T 3pdu_A            2 TTYGFLGLGIM-GGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANG   80 (287)
T ss_dssp             CCEEEECCSTT-HHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CeEEEEccCHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchh
Confidence            47999999886 9999999999999999999874              356677889999999998753    22 1 1 


Q ss_pred             --CCcCCCcEEEEeeeC
Q 024116          196 --SWLKPGAVVLDVGTC  210 (272)
Q Consensus       196 --~~vk~g~vviDig~~  210 (272)
                        +.++++.++||.+..
T Consensus        81 l~~~l~~g~~vv~~st~   97 (287)
T 3pdu_A           81 VLEGIGGGRGYIDMSTV   97 (287)
T ss_dssp             GGGTCCTTCEEEECSCC
T ss_pred             hhhcccCCCEEEECCCC
Confidence              346789999998864

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.57  E-value=6.2e-05  Score=67.74  Aligned_cols=74  Identities=14%  Similarity=0.167  Sum_probs=58.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------CCHhhhcCCCcEEEEecCCCc----cc-c-
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------KNPEQITSEADIVIAAAGVAN----LV-R-  194 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t---------------~~l~~~l~~ADIVIsa~g~p~----~i-~-  194 (272)
                      .++|.|||.|.+ |.+++..|.+.|.+|++++++.               .++.+.+++||+||.+++.+.    .+ . 
T Consensus         7 ~~~I~iIG~G~m-G~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~   85 (303)
T 3g0o_A            7 DFHVGIVGLGSM-GMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGE   85 (303)
T ss_dssp             CCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--
T ss_pred             CCeEEEECCCHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhCh
Confidence            468999999885 9999999999999999998762               355677889999999998753    12 1 


Q ss_pred             C---CCcCCCcEEEEeeeC
Q 024116          195 G---SWLKPGAVVLDVGTC  210 (272)
Q Consensus       195 ~---~~vk~g~vviDig~~  210 (272)
                      .   ..++++.+|||++..
T Consensus        86 ~~l~~~l~~g~ivv~~st~  104 (303)
T 3g0o_A           86 DGVAHLMKPGSAVMVSSTI  104 (303)
T ss_dssp             CCCGGGSCTTCEEEECSCC
T ss_pred             hhHHhhCCCCCEEEecCCC
Confidence            1   346789999998754

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.55  E-value=5.6e-05  Score=68.31  Aligned_cols=77  Identities=16%  Similarity=0.104  Sum_probs=61.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCc----ccc
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LVR  194 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~----~i~  194 (272)
                      ....++|.|||.|.+ |.+++..|.+.|.+|++++|+.              .++.+.+++||+||.+++.+.    .+.
T Consensus         6 ~~~~~~IgiIG~G~m-G~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~   84 (306)
T 3l6d_A            6 ESFEFDVSVIGLGAM-GTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG   84 (306)
T ss_dssp             CCCSCSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT
T ss_pred             ccCCCeEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc
Confidence            456789999999886 9999999999999999999863              466788889999999998653    232


Q ss_pred             CC---CcCCCcEEEEeeeC
Q 024116          195 GS---WLKPGAVVLDVGTC  210 (272)
Q Consensus       195 ~~---~vk~g~vviDig~~  210 (272)
                      .+   .+++|.+|||++..
T Consensus        85 ~~~l~~~~~g~ivid~st~  103 (306)
T 3l6d_A           85 MPGVARALAHRTIVDYTTN  103 (306)
T ss_dssp             STTHHHHTTTCEEEECCCC
T ss_pred             ccchhhccCCCEEEECCCC
Confidence            21   23678899998754

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.51  E-value=6.3e-05  Score=69.15  Aligned_cols=74  Identities=22%  Similarity=0.228  Sum_probs=58.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------CHhhhcCCCcEEEEecCCCc---ccc--
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------NPEQITSEADIVIAAAGVAN---LVR--  194 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~--------------~l~~~l~~ADIVIsa~g~p~---~i~--  194 (272)
                      +++++|.|||.|.+ |.+++..|...|.+|++++++..              ++.+.+++||+||.+++...   ++.  
T Consensus        14 l~~~~I~IIG~G~m-G~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~~~~e~~~~aDvVilavp~~~~~~v~~~~   92 (338)
T 1np3_A           14 IQGKKVAIIGYGSQ-GHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDEFQGRLYKEE   92 (338)
T ss_dssp             HHTSCEEEECCSHH-HHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHHHHHHHHHHH
T ss_pred             hcCCEEEEECchHH-HHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEccHHHHHhcCCEEEEeCCcHHHHHHHHHH
Confidence            46789999999885 99999999999999999987642              34567889999999998432   333  


Q ss_pred             -CCCcCCCcEEEEee
Q 024116          195 -GSWLKPGAVVLDVG  208 (272)
Q Consensus       195 -~~~vk~g~vviDig  208 (272)
                       ...++++++|+|++
T Consensus        93 i~~~l~~~~ivi~~~  107 (338)
T 1np3_A           93 IEPNLKKGATLAFAH  107 (338)
T ss_dssp             TGGGCCTTCEEEESC
T ss_pred             HHhhCCCCCEEEEcC
Confidence             23578899999875

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.51  E-value=0.00014  Score=67.62  Aligned_cols=77  Identities=14%  Similarity=0.188  Sum_probs=60.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCC---cEEEEecCCCcc---c
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEA---DIVIAAAGVANL---V  193 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~A---DIVIsa~g~p~~---i  193 (272)
                      +++++|.|||.|.+ |.+++..|++.|.+|++++++.              .++.+.++++   |+||.+++.+..   +
T Consensus        20 m~~mkIgiIGlG~m-G~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~~v~~vl   98 (358)
T 4e21_A           20 FQSMQIGMIGLGRM-GADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAAVVDSML   98 (358)
T ss_dssp             --CCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGGGHHHHH
T ss_pred             hcCCEEEEECchHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHHHHHHHH
Confidence            46789999999885 9999999999999999999863              3567777778   999999986531   1


Q ss_pred             c--CCCcCCCcEEEEeeeCC
Q 024116          194 R--GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       194 ~--~~~vk~g~vviDig~~~  211 (272)
                      .  ...++++.+|||++...
T Consensus        99 ~~l~~~l~~g~iiId~st~~  118 (358)
T 4e21_A           99 QRMTPLLAANDIVIDGGNSH  118 (358)
T ss_dssp             HHHGGGCCTTCEEEECSSCC
T ss_pred             HHHHhhCCCCCEEEeCCCCC
Confidence            1  23567899999988654

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.48  E-value=0.00012  Score=66.63  Aligned_cols=73  Identities=16%  Similarity=0.105  Sum_probs=58.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC-------------------C-CHhhhcCCCcEEEEecCCCcc---
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT-------------------K-NPEQITSEADIVIAAAGVANL---  192 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t-------------------~-~l~~~l~~ADIVIsa~g~p~~---  192 (272)
                      ++|.|||.|.+ |.+++..|++.| .+|++++++.                   . ++.+.+++||+||.+++.+..   
T Consensus        25 m~IgvIG~G~m-G~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~~~~s~~e~~~~aDvVi~avp~~~~~~~  103 (317)
T 4ezb_A           25 TTIAFIGFGEA-AQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAGIACADVVLSLVVGAATKAV  103 (317)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTCEEESSGGGGGGCSEEEECCCGGGHHHH
T ss_pred             CeEEEECccHH-HHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCCCCCCHHHHHhcCCEEEEecCCHHHHHH
Confidence            68999999885 999999999999 9999999874                   1 566778899999999986542   


Q ss_pred             cc--CCCcCCCcEEEEeeeC
Q 024116          193 VR--GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       193 i~--~~~vk~g~vviDig~~  210 (272)
                      +.  ...++++.+|||++..
T Consensus       104 ~~~i~~~l~~~~ivv~~st~  123 (317)
T 4ezb_A          104 AASAAPHLSDEAVFIDLNSV  123 (317)
T ss_dssp             HHHHGGGCCTTCEEEECCSC
T ss_pred             HHHHHhhcCCCCEEEECCCC
Confidence            11  2356788899998743

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.44  E-value=0.00013  Score=66.45  Aligned_cols=75  Identities=17%  Similarity=0.176  Sum_probs=59.0

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC----------------CCHhh-hcCCCcEEEEecCCCcc---
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT----------------KNPEQ-ITSEADIVIAAAGVANL---  192 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t----------------~~l~~-~l~~ADIVIsa~g~p~~---  192 (272)
                      .-++|.|||.|.+ |.+++..|.+.|.  +|++++++.                .++.+ .+++||+||.+++....   
T Consensus        32 ~~~kI~IIG~G~m-G~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~~~~~v  110 (314)
T 3ggo_A           32 SMQNVLIVGVGFM-GGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREI  110 (314)
T ss_dssp             SCSEEEEESCSHH-HHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGGGHHHH
T ss_pred             CCCEEEEEeeCHH-HHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHHHHHHH
Confidence            3489999999885 9999999999998  999998763                24566 78999999999985431   


Q ss_pred             cc--CCCcCCCcEEEEeeeC
Q 024116          193 VR--GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       193 i~--~~~vk~g~vviDig~~  210 (272)
                      +.  ...++++++|+|++..
T Consensus       111 l~~l~~~l~~~~iv~d~~Sv  130 (314)
T 3ggo_A          111 AKKLSYILSEDATVTDQGSV  130 (314)
T ss_dssp             HHHHHHHSCTTCEEEECCSC
T ss_pred             HHHHhhccCCCcEEEECCCC
Confidence            21  1246889999999854

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.43  E-value=0.00017  Score=64.89  Aligned_cols=74  Identities=19%  Similarity=0.266  Sum_probs=58.9

Q ss_pred             cceEEEEc-CCcccHHHHHHHHHhCCCEEEEEeCCCC-CHhhhcCCCcEEEEecCCCcc---cc--CCCcCCCcEEEEee
Q 024116          136 GKNAVVIG-RSNIVGLPTSLLLQRHHATVSIVHALTK-NPEQITSEADIVIAAAGVANL---VR--GSWLKPGAVVLDVG  208 (272)
Q Consensus       136 gk~v~ViG-~g~~vG~~la~~L~~~ga~V~v~~~~t~-~l~~~l~~ADIVIsa~g~p~~---i~--~~~vk~g~vviDig  208 (272)
                      .++|.||| .|.+ |.+++..|.+.|.+|++++++.. +..+.+++||+||.+++....   +.  ...++++++|+|++
T Consensus        21 ~~~I~iIGg~G~m-G~~la~~l~~~G~~V~~~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l~~~l~~~~iv~~~~   99 (298)
T 2pv7_A           21 IHKIVIVGGYGKL-GGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIERLKPYLTENMLLADLT   99 (298)
T ss_dssp             CCCEEEETTTSHH-HHHHHHHHHTTTCCEEEECTTCGGGHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEECC
T ss_pred             CCEEEEEcCCCHH-HHHHHHHHHhCCCeEEEEECCcccCHHHHhcCCCEEEEeCCHHHHHHHHHHHHhhcCCCcEEEECC
Confidence            46899999 8775 99999999999999999987653 567889999999999985432   21  23567889999986


Q ss_pred             eC
Q 024116          209 TC  210 (272)
Q Consensus       209 ~~  210 (272)
                      ..
T Consensus       100 sv  101 (298)
T 2pv7_A          100 SV  101 (298)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.43  E-value=0.00017  Score=65.34  Aligned_cols=74  Identities=18%  Similarity=0.266  Sum_probs=58.3

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC----------------CCHhhhcCCCcEEEEecCCCcc---cc-
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT----------------KNPEQITSEADIVIAAAGVANL---VR-  194 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t----------------~~l~~~l~~ADIVIsa~g~p~~---i~-  194 (272)
                      -++|.|||.|.+ |.+++..|.+.|. +|++++++.                .++.+.+++||+||.+++.+..   +. 
T Consensus        24 ~~~I~iIG~G~m-G~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~~~~  102 (312)
T 3qsg_A           24 AMKLGFIGFGEA-ASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALEVAQQ  102 (312)
T ss_dssp             -CEEEEECCSHH-HHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTHHHHHHH
T ss_pred             CCEEEEECccHH-HHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhHHHHHHh
Confidence            478999999886 9999999999998 999999851                3567788999999999986542   11 


Q ss_pred             -CCCcCCCcEEEEeeeC
Q 024116          195 -GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       195 -~~~vk~g~vviDig~~  210 (272)
                       .+.++++.+|||....
T Consensus       103 l~~~l~~~~ivvd~st~  119 (312)
T 3qsg_A          103 AGPHLCEGALYADFTSC  119 (312)
T ss_dssp             HGGGCCTTCEEEECCCC
T ss_pred             hHhhcCCCCEEEEcCCC
Confidence             2346778888887644

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.40  E-value=0.00029  Score=60.14  Aligned_cols=58  Identities=17%  Similarity=0.132  Sum_probs=43.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH--------------------hhhcCCCcEEEEecCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP--------------------EQITSEADIVIAAAGV  189 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l--------------------~~~l~~ADIVIsa~g~  189 (272)
                      ..++||+|+|.|+++-+|+.++..|+++|++|+++.|+...+                    .+.+...|+||...|.
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~   94 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGS   94 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCC
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCC
Confidence            457899999999988889999999999999999998875322                    3445566777766663

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.40  E-value=0.00018  Score=63.41  Aligned_cols=71  Identities=17%  Similarity=0.297  Sum_probs=55.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC-------------HhhhcCCCcEEEEecCCCc-c---cc--CCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN-------------PEQITSEADIVIAAAGVAN-L---VR--GSW  197 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~-------------l~~~l~~ADIVIsa~g~p~-~---i~--~~~  197 (272)
                      +++.|||.|.+ |.+++..|.+ |.+|++++++...             +.+.++++|+||.+++.+. .   ++  ...
T Consensus         2 ~~i~iiG~G~~-G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~D~vi~~v~~~~~~~~v~~~l~~~   79 (289)
T 2cvz_A            2 EKVAFIGLGAM-GYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPY   79 (289)
T ss_dssp             CCEEEECCSTT-HHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTT
T ss_pred             CeEEEEcccHH-HHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccCHHHHHhCCCEEEEeCCChHHHHHHHHHHHhh
Confidence            47999999885 9999999999 9999999886421             3456788999999999764 2   21  246


Q ss_pred             cCCCcEEEEeee
Q 024116          198 LKPGAVVLDVGT  209 (272)
Q Consensus       198 vk~g~vviDig~  209 (272)
                      ++++.+|+|++.
T Consensus        80 l~~~~~vv~~s~   91 (289)
T 2cvz_A           80 LREGTYWVDATS   91 (289)
T ss_dssp             CCTTEEEEECSC
T ss_pred             CCCCCEEEECCC
Confidence            788999999864

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.40  E-value=9.5e-05  Score=68.36  Aligned_cols=113  Identities=19%  Similarity=0.192  Sum_probs=71.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------------CCHhhhcCCCcEEEEecCCC-cc
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------KNPEQITSEADIVIAAAGVA-NL  192 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------------~~l~~~l~~ADIVIsa~g~p-~~  192 (272)
                      =+.+||+|+|+|. ||++++..|.+ ...|+++.+..                    ..+.+.++++|+||+++|.. +.
T Consensus        14 g~~mkilvlGaG~-vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~~~   91 (365)
T 3abi_A           14 GRHMKVLILGAGN-IGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFLGF   91 (365)
T ss_dssp             --CCEEEEECCSH-HHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGGHH
T ss_pred             CCccEEEEECCCH-HHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCcccc
Confidence            3445799999977 59999998865 46898887542                    23567889999999999742 21


Q ss_pred             -ccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEeccCC-CcccHHHHHHHHHHHHHH
Q 024116          193 -VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVP-GGVGPMTVAMLLSNTLDS  264 (272)
Q Consensus       193 -i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvp-GGvGp~T~amL~~n~v~a  264 (272)
                       +-...++.|..++|+.+.+.+          .   -..+ +. +++++.. -+| =|+-|=-..|+...+++.
T Consensus        92 ~v~~~~~~~g~~yvD~s~~~~~----------~---~~l~-~~-a~~~g~~-~i~~~G~~PG~~~~~a~~~~~~  149 (365)
T 3abi_A           92 KSIKAAIKSKVDMVDVSFMPEN----------P---LELR-DE-AEKAQVT-IVFDAGFAPGLSNILMGRIFQE  149 (365)
T ss_dssp             HHHHHHHHHTCEEEECCCCSSC----------G---GGGH-HH-HHHTTCE-EECCCBTTTBHHHHHHHHHHHH
T ss_pred             hHHHHHHhcCcceEeeeccchh----------h---hhhh-hh-hccCCce-eeecCCCCCchHHHHHHHHHHh
Confidence             334456778999999866532          1   1112 22 3444321 122 256666666777665543

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.36  E-value=0.00018  Score=63.84  Aligned_cols=70  Identities=23%  Similarity=0.366  Sum_probs=55.4

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCc----cccC----
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LVRG----  195 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~----~i~~----  195 (272)
                      ++.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.|.    .+..    
T Consensus         2 ~i~iiG~G~m-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~   80 (296)
T 2gf2_A            2 PVGFIGLGNM-GNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI   80 (296)
T ss_dssp             CEEEECCSTT-HHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred             eEEEEeccHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence            6899999886 9999999999999999998763              345677788999999998653    2221    


Q ss_pred             -CCcCCCcEEEEee
Q 024116          196 -SWLKPGAVVLDVG  208 (272)
Q Consensus       196 -~~vk~g~vviDig  208 (272)
                       ..++++.+|||..
T Consensus        81 ~~~l~~~~~vv~~s   94 (296)
T 2gf2_A           81 LKKVKKGSLLIDSS   94 (296)
T ss_dssp             GGTCCTTCEEEECS
T ss_pred             HhcCCCCCEEEECC
Confidence             2467889999954

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.36  E-value=0.00029  Score=60.17  Aligned_cols=74  Identities=22%  Similarity=0.338  Sum_probs=53.1

Q ss_pred             hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhhhcCCCcEEEEecCCCc---ccc--CCCcCCCcEE
Q 024116          130 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVAN---LVR--GSWLKPGAVV  204 (272)
Q Consensus       130 ~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l~~~l~~ADIVIsa~g~p~---~i~--~~~vk~g~vv  204 (272)
                      .+.++.++++.|||.|.+ |.+++..|.+.|.+|++++++.+    .+++||+||.+++.+.   .+.  ...++ +.++
T Consensus        13 ~~~~~~~~~I~iiG~G~m-G~~la~~l~~~g~~V~~~~~~~~----~~~~aD~vi~av~~~~~~~v~~~l~~~~~-~~~v   86 (209)
T 2raf_A           13 ENLYFQGMEITIFGKGNM-GQAIGHNFEIAGHEVTYYGSKDQ----ATTLGEIVIMAVPYPALAALAKQYATQLK-GKIV   86 (209)
T ss_dssp             -------CEEEEECCSHH-HHHHHHHHHHTTCEEEEECTTCC----CSSCCSEEEECSCHHHHHHHHHHTHHHHT-TSEE
T ss_pred             cccccCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEcCCHH----HhccCCEEEEcCCcHHHHHHHHHHHHhcC-CCEE
Confidence            456788999999999885 99999999999999999988654    6789999999998322   121  12345 8899


Q ss_pred             EEeee
Q 024116          205 LDVGT  209 (272)
Q Consensus       205 iDig~  209 (272)
                      +|+..
T Consensus        87 i~~~~   91 (209)
T 2raf_A           87 VDITN   91 (209)
T ss_dssp             EECCC
T ss_pred             EEECC
Confidence            99864

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.32  E-value=0.00017  Score=64.85  Aligned_cols=72  Identities=25%  Similarity=0.369  Sum_probs=56.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCc----cccC---
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LVRG---  195 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~----~i~~---  195 (272)
                      +++.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.|.    .+..   
T Consensus        31 ~~I~iIG~G~m-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~  109 (316)
T 2uyy_A           31 KKIGFLGLGLM-GSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSG  109 (316)
T ss_dssp             SCEEEECCSHH-HHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CeEEEEcccHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchh
Confidence            68999999885 9999999999999999998763              245566788999999998543    2222   


Q ss_pred             --CCcCCCcEEEEeee
Q 024116          196 --SWLKPGAVVLDVGT  209 (272)
Q Consensus       196 --~~vk~g~vviDig~  209 (272)
                        +.++++.+|||++.
T Consensus       110 ~~~~l~~~~~vv~~s~  125 (316)
T 2uyy_A          110 VLQGIRPGKCYVDMST  125 (316)
T ss_dssp             GGGGCCTTCEEEECSC
T ss_pred             HhhcCCCCCEEEECCC
Confidence              45778899999853

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.27  E-value=0.00025  Score=63.10  Aligned_cols=73  Identities=23%  Similarity=0.401  Sum_probs=57.4

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCc----ccc--C-
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LVR--G-  195 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~----~i~--~-  195 (272)
                      +++.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+.    .+.  . 
T Consensus         5 ~~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~   83 (301)
T 3cky_A            5 IKIGFIGLGAM-GKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGG   83 (301)
T ss_dssp             CEEEEECCCTT-HHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CEEEEECccHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcch
Confidence            58999999885 9999999999999999998753              345667788999999998654    232  1 


Q ss_pred             --CCcCCCcEEEEeeeC
Q 024116          196 --SWLKPGAVVLDVGTC  210 (272)
Q Consensus       196 --~~vk~g~vviDig~~  210 (272)
                        ..++++.+|+|+...
T Consensus        84 l~~~l~~~~~vv~~~~~  100 (301)
T 3cky_A           84 VLSACKAGTVIVDMSSV  100 (301)
T ss_dssp             HHHHSCTTCEEEECCCC
T ss_pred             HhhcCCCCCEEEECCCC
Confidence              246788999998643

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.27  E-value=0.00023  Score=60.94  Aligned_cols=73  Identities=16%  Similarity=0.200  Sum_probs=55.1

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------CHhhhcCCCcEEEEecCCCc---ccc-CCCc
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITSEADIVIAAAGVAN---LVR-GSWL  198 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------~l~~~l~~ADIVIsa~g~p~---~i~-~~~v  198 (272)
                      .+++.|||.|.+ |+.++..|.+.|.+|++++|+.+             ++.+.++++|+||.+++...   ++. ..+.
T Consensus        28 ~~~I~iiG~G~~-G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~DvVi~av~~~~~~~v~~l~~~~  106 (215)
T 2vns_A           28 APKVGILGSGDF-ARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFVAVFREHYSSLCSLSDQL  106 (215)
T ss_dssp             -CCEEEECCSHH-HHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEEEHHHHTTSCSEEEECSCGGGSGGGGGGHHHH
T ss_pred             CCEEEEEccCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCceecHHHHHhCCCEEEECCChHHHHHHHHHHHhc
Confidence            468999998875 99999999999999999988632             34567889999999998432   121 1122


Q ss_pred             CCCcEEEEeeeC
Q 024116          199 KPGAVVLDVGTC  210 (272)
Q Consensus       199 k~g~vviDig~~  210 (272)
                       ++.+++|+...
T Consensus       107 -~~~~vv~~s~g  117 (215)
T 2vns_A          107 -AGKILVDVSNP  117 (215)
T ss_dssp             -TTCEEEECCCC
T ss_pred             -CCCEEEEeCCC
Confidence             68899999854

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.26  E-value=0.00026  Score=62.96  Aligned_cols=73  Identities=19%  Similarity=0.287  Sum_probs=57.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCc----ccc--C-
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LVR--G-  195 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~----~i~--~-  195 (272)
                      .++.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+.    .+.  . 
T Consensus         6 m~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~   84 (299)
T 1vpd_A            6 MKVGFIGLGIM-GKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENG   84 (299)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             ceEEEECchHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcch
Confidence            47999999885 9999999999999999998752              355677888999999998653    231  1 


Q ss_pred             --CCcCCCcEEEEeeeC
Q 024116          196 --SWLKPGAVVLDVGTC  210 (272)
Q Consensus       196 --~~vk~g~vviDig~~  210 (272)
                        .+++++.+|+|++..
T Consensus        85 l~~~l~~~~~vv~~s~~  101 (299)
T 1vpd_A           85 IIEGAKPGTVLIDMSSI  101 (299)
T ss_dssp             HHHHCCTTCEEEECSCC
T ss_pred             HhhcCCCCCEEEECCCC
Confidence              246789999998643

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.20  E-value=0.00046  Score=61.08  Aligned_cols=72  Identities=18%  Similarity=0.255  Sum_probs=56.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCc----ccc----
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LVR----  194 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~----~i~----  194 (272)
                      .++.|||.|.+ |.+++..|.+.|.+|++++ +.              .++.+.++++|+||.+++.+.    .+.    
T Consensus         4 m~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~   81 (295)
T 1yb4_A            4 MKLGFIGLGIM-GSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHG   81 (295)
T ss_dssp             CEEEECCCSTT-HHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTS
T ss_pred             CEEEEEccCHH-HHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchh
Confidence            48999999886 9999999999999999887 43              245566789999999998764    232    


Q ss_pred             -CCCcCCCcEEEEeeeC
Q 024116          195 -GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       195 -~~~vk~g~vviDig~~  210 (272)
                       ...++++.+|+|+...
T Consensus        82 l~~~l~~~~~vv~~s~~   98 (295)
T 1yb4_A           82 CAKTSLQGKTIVDMSSI   98 (295)
T ss_dssp             STTSCCTTEEEEECSCC
T ss_pred             HhhcCCCCCEEEECCCC
Confidence             1356789999998643

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.17  E-value=0.0003  Score=61.59  Aligned_cols=75  Identities=16%  Similarity=0.179  Sum_probs=57.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCCC---------------CCHhhhcCCCcEEEEecCCCc---ccc
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALT---------------KNPEQITSEADIVIAAAGVAN---LVR  194 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~-V~v~~~~t---------------~~l~~~l~~ADIVIsa~g~p~---~i~  194 (272)
                      +.+.++.|||.|.+ |..++..|.+.|.+ |++++++.               .++.+.++++|+||.+++...   ++.
T Consensus         8 ~~~m~i~iiG~G~m-G~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~~~~~v~~   86 (266)
T 3d1l_A            8 IEDTPIVLIGAGNL-ATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDSAFAELLQ   86 (266)
T ss_dssp             GGGCCEEEECCSHH-HHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHHHHHHHHH
T ss_pred             CCCCeEEEEcCCHH-HHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHHHHHHHHH
Confidence            45678999999885 99999999999987 88998752               245677889999999998542   221


Q ss_pred             --CCCcCCCcEEEEeee
Q 024116          195 --GSWLKPGAVVLDVGT  209 (272)
Q Consensus       195 --~~~vk~g~vviDig~  209 (272)
                        ...++++.+++|+..
T Consensus        87 ~l~~~~~~~~ivv~~s~  103 (266)
T 3d1l_A           87 GIVEGKREEALMVHTAG  103 (266)
T ss_dssp             HHHTTCCTTCEEEECCT
T ss_pred             HHHhhcCCCcEEEECCC
Confidence              135678999999854

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.17  E-value=0.0002  Score=68.49  Aligned_cols=74  Identities=16%  Similarity=0.176  Sum_probs=55.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------------CHhhhcCCCcEEEEecCCC-
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------NPEQITSEADIVIAAAGVA-  190 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-----------------------~l~~~l~~ADIVIsa~g~p-  190 (272)
                      ++|+|+|+|+|++ |++++..|++.|++|++++|+..                       ++.+.++++|+||+++|.. 
T Consensus         2 ~~k~VlViGaG~i-G~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~   80 (450)
T 1ff9_A            2 ATKSVLMLGSGFV-TRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTF   80 (450)
T ss_dssp             CCCEEEEECCSTT-HHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--C
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCcccc
Confidence            5789999998885 99999999999999999987521                       2235567899999999853 


Q ss_pred             cc-ccCCCcCCCcEEEEeee
Q 024116          191 NL-VRGSWLKPGAVVLDVGT  209 (272)
Q Consensus       191 ~~-i~~~~vk~g~vviDig~  209 (272)
                      +. +..+.++.|..++|..+
T Consensus        81 ~~~i~~a~l~~g~~vvd~~~  100 (450)
T 1ff9_A           81 HATVIKSAIRQKKHVVTTSY  100 (450)
T ss_dssp             HHHHHHHHHHHTCEEEESSC
T ss_pred             chHHHHHHHhCCCeEEEeec
Confidence            21 34455677777888754

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.16  E-value=0.00091  Score=62.24  Aligned_cols=92  Identities=18%  Similarity=0.235  Sum_probs=66.5

Q ss_pred             cCCHHHHHHH----HHHhCC-CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------CHhhhcC
Q 024116          117 PCTPKGCIEL----LIRSGV-EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITS  178 (272)
Q Consensus       117 p~Ta~g~~~~----l~~~~~-~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------~l~~~l~  178 (272)
                      ++|.+|++..    +++.+. +++||+|+|+|.|.+ |+.++..|...|++|.+++++..             +..+.+.
T Consensus       151 ~aTg~Gv~~~~~~~~~~~G~~~L~GktV~I~G~GnV-G~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v~~~ell~  229 (355)
T 1c1d_A          151 FTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAV-GGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLS  229 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGG
T ss_pred             hHHHHHHHHHHHHHHHhcCCCCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEeChHHhhc
Confidence            6788887655    556787 899999999999885 99999999999999998765421             2234444


Q ss_pred             -CCcEEEEecCCCccccCCC---cCCCcEEEEeeeCC
Q 024116          179 -EADIVIAAAGVANLVRGSW---LKPGAVVLDVGTCP  211 (272)
Q Consensus       179 -~ADIVIsa~g~p~~i~~~~---vk~g~vviDig~~~  211 (272)
                       ++||++.+ ...+.|+.+.   ++ ..+|++.+-.|
T Consensus       230 ~~~DIliP~-A~~~~I~~~~~~~lk-~~iVie~AN~p  264 (355)
T 1c1d_A          230 TPCDVFAPC-AMGGVITTEVARTLD-CSVVAGAANNV  264 (355)
T ss_dssp             CCCSEEEEC-SCSCCBCHHHHHHCC-CSEECCSCTTC
T ss_pred             CccceecHh-HHHhhcCHHHHhhCC-CCEEEECCCCC
Confidence             88998753 3555666543   33 56777766433

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.15  E-value=0.00035  Score=61.66  Aligned_cols=73  Identities=18%  Similarity=0.247  Sum_probs=56.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC----------------CCHhhhcC-CCcEEEEecCCCc---ccc
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT----------------KNPEQITS-EADIVIAAAGVAN---LVR  194 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t----------------~~l~~~l~-~ADIVIsa~g~p~---~i~  194 (272)
                      ++|.|||.|.+ |.+++..|.+.|.  +|++++++.                .++.+.++ ++|+||.+++...   .+.
T Consensus         2 ~~I~iIG~G~m-G~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~~~~~v~~   80 (281)
T 2g5c_A            2 QNVLIVGVGFM-GGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAK   80 (281)
T ss_dssp             CEEEEESCSHH-HHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHHH
T ss_pred             cEEEEEecCHH-HHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHHHHHHHHH
Confidence            57999999885 9999999999997  899998752                24567788 9999999998532   222


Q ss_pred             --CCCcCCCcEEEEeeeC
Q 024116          195 --GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       195 --~~~vk~g~vviDig~~  210 (272)
                        ..+++++.+|+|++..
T Consensus        81 ~l~~~l~~~~iv~~~~~~   98 (281)
T 2g5c_A           81 KLSYILSEDATVTDQGSV   98 (281)
T ss_dssp             HHHHHSCTTCEEEECCSC
T ss_pred             HHHhhCCCCcEEEECCCC
Confidence              1246788999998743

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.15  E-value=0.00051  Score=61.19  Aligned_cols=71  Identities=20%  Similarity=0.229  Sum_probs=53.7

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------------------------CCHhhhc
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------------------------KNPEQIT  177 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t---------------------------------------~~l~~~l  177 (272)
                      ++|.|||+|.+ |.+++..|+..|.+|++++++.                                       .++.+.+
T Consensus         5 ~kV~VIGaG~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~   83 (283)
T 4e12_A            5 TNVTVLGTGVL-GSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAV   83 (283)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHT
T ss_pred             CEEEEECCCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHh
Confidence            78999999885 9999999999999999998753                                       1334568


Q ss_pred             CCCcEEEEecCCCc-----ccc--CCCcCCCcEEEEee
Q 024116          178 SEADIVIAAAGVAN-----LVR--GSWLKPGAVVLDVG  208 (272)
Q Consensus       178 ~~ADIVIsa~g~p~-----~i~--~~~vk~g~vviDig  208 (272)
                      ++||+||.+++...     ++.  ...+++++++++..
T Consensus        84 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~t  121 (283)
T 4e12_A           84 KDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNS  121 (283)
T ss_dssp             TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             ccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECC
Confidence            89999999998531     111  12357788888754

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.13  E-value=0.00031  Score=54.83  Aligned_cols=56  Identities=25%  Similarity=0.213  Sum_probs=41.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------C---Hhhh-cCCCcEEEEecCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------N---PEQI-TSEADIVIAAAGVA  190 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~------------------~---l~~~-l~~ADIVIsa~g~p  190 (272)
                      +++++++|+|+|. +|+.++..|.+.|++|++++++..                  +   +.+. +.++|+||.+++.+
T Consensus         4 ~~~~~v~I~G~G~-iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   81 (144)
T 2hmt_A            4 IKNKQFAVIGLGR-FGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN   81 (144)
T ss_dssp             --CCSEEEECCSH-HHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred             CcCCcEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence            5678999999976 599999999999999999876521                  1   1121 56788888888864

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=96.18  E-value=7.4e-05  Score=63.79  Aligned_cols=76  Identities=16%  Similarity=0.155  Sum_probs=56.3

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------CHhhhcCCCcEEEEecCCCc---cccCCCc
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NPEQITSEADIVIAAAGVAN---LVRGSWL  198 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~------------~l~~~l~~ADIVIsa~g~p~---~i~~~~v  198 (272)
                      +.++++.|||.|.+ |.+++..|.+.|.+|++++|+..            ++.+.++++|+||.++....   .+.-...
T Consensus        17 ~~~~~I~iIG~G~m-G~~la~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~aDvVilav~~~~~~~v~~l~~~   95 (201)
T 2yjz_A           17 EKQGVVCIFGTGDF-GKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLCYSEAASRSDVIVLAVHREHYDFLAELADS   95 (201)
Confidence            46788999999886 99999999999999999887642            23456788999999998533   2211113


Q ss_pred             CCCcEEEEeeeC
Q 024116          199 KPGAVVLDVGTC  210 (272)
Q Consensus       199 k~g~vviDig~~  210 (272)
                      .++.+|||+..-
T Consensus        96 ~~~~ivI~~~~G  107 (201)
T 2yjz_A           96 LKGRVLIDVSNN  107 (201)
Confidence            467889998743

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.10  E-value=0.00074  Score=58.73  Aligned_cols=68  Identities=19%  Similarity=0.296  Sum_probs=52.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC----EEEEEeCCC---------------CCHhhhcCCCcEEEEecCCCcc----c
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHA----TVSIVHALT---------------KNPEQITSEADIVIAAAGVANL----V  193 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga----~V~v~~~~t---------------~~l~~~l~~ADIVIsa~g~p~~----i  193 (272)
                      +++.|||.|.+ |.+++..|.+.|.    +|++++|+.               .+..+.++++|+||.++. |..    +
T Consensus         3 ~~i~iIG~G~m-G~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~-~~~~~~v~   80 (247)
T 3gt0_A            3 KQIGFIGCGNM-GMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIK-PDLYASII   80 (247)
T ss_dssp             CCEEEECCSHH-HHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSC-TTTHHHHC
T ss_pred             CeEEEECccHH-HHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeC-HHHHHHHH
Confidence            58999999886 9999999999997    999998863               355677889999999994 432    2


Q ss_pred             c--CCCcCCCcEEEE
Q 024116          194 R--GSWLKPGAVVLD  206 (272)
Q Consensus       194 ~--~~~vk~g~vviD  206 (272)
                      +  ..+++++.+||.
T Consensus        81 ~~l~~~l~~~~~vvs   95 (247)
T 3gt0_A           81 NEIKEIIKNDAIIVT   95 (247)
T ss_dssp             ---CCSSCTTCEEEE
T ss_pred             HHHHhhcCCCCEEEE
Confidence            1  234677877774

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.08  E-value=0.00078  Score=57.36  Aligned_cols=56  Identities=13%  Similarity=0.145  Sum_probs=46.6

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCCC---------------------CHhhhcCCCcEEEEecCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALTK---------------------NPEQITSEADIVIAAAGV  189 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t~---------------------~l~~~l~~ADIVIsa~g~  189 (272)
                      +++|+++|.|+++-+|+.++..|+++|+  +|+++.|+..                     ++.+.++..|+||+..|.
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~   94 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   94 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCc
Confidence            5789999999988889999999999999  9999987642                     234566788999988875

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.08  E-value=0.00085  Score=61.79  Aligned_cols=94  Identities=15%  Similarity=0.196  Sum_probs=66.6

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH---------------------h
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP---------------------E  174 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l---------------------~  174 (272)
                      +||.....+..++..++...|++|+|+|+|+ +|..+++++...|++|+++.++...+                     .
T Consensus       168 l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~-vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~  246 (366)
T 1yqd_A          168 LLCAGITVYSPLKYFGLDEPGKHIGIVGLGG-LGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQ  246 (366)
T ss_dssp             GGTHHHHHHHHHHHTTCCCTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHH
T ss_pred             hhhhHHHHHHHHHhcCcCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHH
Confidence            4555555667777766555899999999876 69999999999999988877543221                     1


Q ss_pred             hhcCCCcEEEEecCCCcccc--CCCcCCCcEEEEeeeC
Q 024116          175 QITSEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       175 ~~l~~ADIVIsa~g~p~~i~--~~~vk~g~vviDig~~  210 (272)
                      +....+|+||.++|.+..+.  -+.++++-.++.+|..
T Consensus       247 ~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~  284 (366)
T 1yqd_A          247 AAAGTLDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAP  284 (366)
T ss_dssp             HTTTCEEEEEECCSSCCCSHHHHHHEEEEEEEEECCCC
T ss_pred             HhhCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEccC
Confidence            22345799999998764332  2356777778888864

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.07  E-value=0.00062  Score=59.91  Aligned_cols=70  Identities=21%  Similarity=0.220  Sum_probs=54.0

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------CCHhhhcCCCcEEEEecCCCc---ccc--CC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------KNPEQITSEADIVIAAAGVAN---LVR--GS  196 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t----------------~~l~~~l~~ADIVIsa~g~p~---~i~--~~  196 (272)
                      ++.|||.|.+ |.+++..|.+.|.+|++++++.                .++.+. +++|+||.+++...   .+.  ..
T Consensus         2 ~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~~~~~~~~~~l~~   79 (279)
T 2f1k_A            2 KIGVVGLGLI-GASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPIQLILPTLEKLIP   79 (279)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCHHHHHHHHHHHGG
T ss_pred             EEEEEcCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCHHHHHHHHHHHHh
Confidence            6899999885 9999999999999999998752                244556 88999999998432   222  23


Q ss_pred             CcCCCcEEEEeee
Q 024116          197 WLKPGAVVLDVGT  209 (272)
Q Consensus       197 ~vk~g~vviDig~  209 (272)
                      .++++.+|+|++.
T Consensus        80 ~~~~~~~vv~~~~   92 (279)
T 2f1k_A           80 HLSPTAIVTDVAS   92 (279)
T ss_dssp             GSCTTCEEEECCS
T ss_pred             hCCCCCEEEECCC
Confidence            5678999999853

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.04  E-value=0.00097  Score=54.92  Aligned_cols=55  Identities=18%  Similarity=0.223  Sum_probs=44.2

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------CHhhhcCCCcEEEEecCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAGV  189 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~---------------------~l~~~l~~ADIVIsa~g~  189 (272)
                      .+++++|.|+++.+|+.++..|.++|.+|+++.|+..                     ++.+.++.+|+||...|.
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~   77 (206)
T 1hdo_A            2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT   77 (206)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccC
Confidence            3489999999888899999999999999999887531                     234566778888887774

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.03  E-value=0.00085  Score=64.66  Aligned_cols=77  Identities=16%  Similarity=0.254  Sum_probs=57.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------------CCHhhhcCC---CcEEEEecCCCc
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------------KNPEQITSE---ADIVIAAAGVAN  191 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t------------------~~l~~~l~~---ADIVIsa~g~p~  191 (272)
                      .+.-++|.|||.|.+ |.+++..|++.|.+|++.+|+.                  .++.+.+++   +|+||.+++.+.
T Consensus        12 ~~~~~~IgvIGlG~M-G~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~   90 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVM-GRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGA   90 (480)
T ss_dssp             ---CBSEEEECCSHH-HHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSS
T ss_pred             ccCCCeEEEEccHHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHH
Confidence            456789999999886 9999999999999999998863                  234455555   999999998753


Q ss_pred             c----cc--CCCcCCCcEEEEeeeC
Q 024116          192 L----VR--GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       192 ~----i~--~~~vk~g~vviDig~~  210 (272)
                      .    +.  ...++++.+|||++..
T Consensus        91 ~v~~vl~~l~~~l~~g~iIId~s~g  115 (480)
T 2zyd_A           91 GTDAAIDSLKPYLDKGDIIIDGGNT  115 (480)
T ss_dssp             HHHHHHHHHGGGCCTTCEEEECSCC
T ss_pred             HHHHHHHHHHhhcCCCCEEEECCCC
Confidence            1    21  2356789999998754

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.00  E-value=0.00089  Score=53.96  Aligned_cols=38  Identities=18%  Similarity=0.176  Sum_probs=31.8

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .....+++++|+|+|. +|+.++..|...|..|+++.++
T Consensus        14 ~~~~~~~~v~IiG~G~-iG~~la~~L~~~g~~V~vid~~   51 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGR-LGSLIANLASSSGHSVVVVDKN   51 (155)
T ss_dssp             ---CCCCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESC
T ss_pred             hcccCCCcEEEECCCH-HHHHHHHHHHhCCCeEEEEECC
Confidence            3567889999999977 5999999999999999999865

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.95  E-value=0.0012  Score=55.02  Aligned_cols=54  Identities=15%  Similarity=0.148  Sum_probs=44.4

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHh------------------hhcCCCcEEEEecCCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPE------------------QITSEADIVIAAAGVA  190 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l~------------------~~l~~ADIVIsa~g~p  190 (272)
                      ++|+|.|+++.+|+.++..|+++|.+|+++.|+...+.                  +.+..+|+||...|.+
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~   72 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSDQNVVVDAYGIS   72 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCHHHHTTCSEEEECCCSS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhhhhhcCCCEEEECCcCC
Confidence            37999999888899999999999999999988742211                  4677899999988864

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=96.95  E-value=0.00073  Score=61.33  Aligned_cols=71  Identities=8%  Similarity=0.168  Sum_probs=54.3

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCC----CEEEEEeCCCC----------------CHhhhcCCCcEEEEecCCCcc---
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHH----ATVSIVHALTK----------------NPEQITSEADIVIAAAGVANL---  192 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~g----a~V~v~~~~t~----------------~l~~~l~~ADIVIsa~g~p~~---  192 (272)
                      ..+|.|||.|.+ |.+++..|.+.|    ..|++++|+..                +..+.++++|+||.++. |..   
T Consensus        22 ~mkI~iIG~G~m-G~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~~   99 (322)
T 2izz_A           22 SMSVGFIGAGQL-AFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIPF   99 (322)
T ss_dssp             CCCEEEESCSHH-HHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHHH
T ss_pred             CCEEEEECCCHH-HHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHHH
Confidence            357999999885 999999999999    68999988642                33456778999999997 432   


Q ss_pred             -cc--CCCcCCCcEEEEee
Q 024116          193 -VR--GSWLKPGAVVLDVG  208 (272)
Q Consensus       193 -i~--~~~vk~g~vviDig  208 (272)
                       +.  ...++++.+|||+.
T Consensus       100 vl~~l~~~l~~~~ivvs~s  118 (322)
T 2izz_A          100 ILDEIGADIEDRHIVVSCA  118 (322)
T ss_dssp             HHHHHGGGCCTTCEEEECC
T ss_pred             HHHHHHhhcCCCCEEEEeC
Confidence             11  13457788999984

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=96.95  E-value=0.0011  Score=57.62  Aligned_cols=69  Identities=13%  Similarity=0.119  Sum_probs=52.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------CCHhhhcCCCcEEEEecCCCcccc--CCCcC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------KNPEQITSEADIVIAAAGVANLVR--GSWLK  199 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t---------------~~l~~~l~~ADIVIsa~g~p~~i~--~~~vk  199 (272)
                      .++.|||.|.+ |++++..|.+.|..|++++++.               .++.+.++++|+||.+++ |..+.  -..++
T Consensus         4 m~i~iiG~G~m-G~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~~v~~~l~   81 (259)
T 2ahr_A            4 MKIGIIGVGKM-ASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVLKPLH   81 (259)
T ss_dssp             CEEEEECCSHH-HHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHHTTSC
T ss_pred             cEEEEECCCHH-HHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHHHHHHHhc
Confidence            47999999885 9999999999999999998752               245667789999999998 43211  01234


Q ss_pred             CCcEEEEe
Q 024116          200 PGAVVLDV  207 (272)
Q Consensus       200 ~g~vviDi  207 (272)
                      ++.+++|+
T Consensus        82 ~~~~vv~~   89 (259)
T 2ahr_A           82 FKQPIISM   89 (259)
T ss_dssp             CCSCEEEC
T ss_pred             cCCEEEEe
Confidence            67778877

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=96.94  E-value=0.003  Score=55.19  Aligned_cols=80  Identities=18%  Similarity=0.258  Sum_probs=55.5

Q ss_pred             CCccceEEEEcCC----------------cccHHHHHHHHHhCCCEEEEEeCCCC-------------CH-------hhh
Q 024116          133 EIMGKNAVVIGRS----------------NIVGLPTSLLLQRHHATVSIVHALTK-------------NP-------EQI  176 (272)
Q Consensus       133 ~l~gk~v~ViG~g----------------~~vG~~la~~L~~~ga~V~v~~~~t~-------------~l-------~~~  176 (272)
                      +++||+|+|-|++                +-+|+++|..|+.+|+.|+++++...             +.       .+.
T Consensus         5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~l~~~~g~~~~dv~~~~~~~~~v~~~   84 (226)
T 1u7z_A            5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNAS   84 (226)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcccccCCCCeEEccCcHHHHHHHHHHh
Confidence            5789999999992                43599999999999999999876421             11       233


Q ss_pred             cCCCcEEEEecCCCcc----ccCCCcCC---C--cEEEEeeeCCC
Q 024116          177 TSEADIVIAAAGVANL----VRGSWLKP---G--AVVLDVGTCPV  212 (272)
Q Consensus       177 l~~ADIVIsa~g~p~~----i~~~~vk~---g--~vviDig~~~~  212 (272)
                      ....|++|++.|...+    ...+-+++   +  ...+.+--+|+
T Consensus        85 ~~~~Dili~~Aav~d~~p~~~~~~KIkk~~~~~~~l~l~L~~~pd  129 (226)
T 1u7z_A           85 VQQQNIFIGCAAVADYRAATVAPEKIKKQATQGDELTIKMVKNPD  129 (226)
T ss_dssp             GGGCSEEEECCBCCSEEESSCCSSCC-------CEEEEEEEECCC
T ss_pred             cCCCCEEEECCcccCCCCccCChHHhccccccCCceEEEEeecHH
Confidence            4679999998885432    33445666   2  35677776664

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=96.94  E-value=0.0012  Score=58.60  Aligned_cols=57  Identities=19%  Similarity=0.242  Sum_probs=46.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------------CHhhhcCCCcEEEEec
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------------NPEQITSEADIVIAAA  187 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~------------------------~l~~~l~~ADIVIsa~  187 (272)
                      .+|+||.++|-|++.=+|++++..|+++|++|.++.|+..                        ...+..-.-|++|+..
T Consensus         7 ~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnnA   86 (261)
T 4h15_A            7 LNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEGLPEELFVEADLTTKEGCAIVAEATRQRLGGVDVIVHML   86 (261)
T ss_dssp             CCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTTSCTTTEEECCTTSHHHHHHHHHHHHHHTSSCSEEEECC
T ss_pred             cCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhCCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            4789999999998887899999999999999999988631                        1123345679999877


Q ss_pred             C
Q 024116          188 G  188 (272)
Q Consensus       188 g  188 (272)
                      |
T Consensus        87 G   87 (261)
T 4h15_A           87 G   87 (261)
T ss_dssp             C
T ss_pred             C
Confidence            7

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=96.94  E-value=0.0016  Score=59.66  Aligned_cols=94  Identities=18%  Similarity=0.228  Sum_probs=66.4

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH---------------------h
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP---------------------E  174 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l---------------------~  174 (272)
                      +||.....+..+++.++...|.+|+|+|+|+ +|..+++++...|++|+++.++...+                     .
T Consensus       161 l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~-vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~  239 (357)
T 2cf5_A          161 LLCAGVTVYSPLSHFGLKQPGLRGGILGLGG-VGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMS  239 (357)
T ss_dssp             GGTHHHHHHHHHHHTSTTSTTCEEEEECCSH-HHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHH
T ss_pred             hhhhHHHHHHHHHhcCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHH
Confidence            4555555666777666544799999999876 69999999999999988887653221                     1


Q ss_pred             hhcCCCcEEEEecCCCccc--cCCCcCCCcEEEEeeeC
Q 024116          175 QITSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       175 ~~l~~ADIVIsa~g~p~~i--~~~~vk~g~vviDig~~  210 (272)
                      +....+|+||.++|.+..+  --+.++++-.++.+|..
T Consensus       240 ~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~  277 (357)
T 2cf5_A          240 ELADSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVI  277 (357)
T ss_dssp             HSTTTEEEEEECCCSCCCSHHHHTTEEEEEEEEECSCC
T ss_pred             HhcCCCCEEEECCCChHHHHHHHHHhccCCEEEEeCCC
Confidence            1223479999999876433  23567787778888864

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.93  E-value=0.0019  Score=58.89  Aligned_cols=94  Identities=19%  Similarity=0.121  Sum_probs=67.3

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhh---------------hcCCC
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQ---------------ITSEA  180 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l~~---------------~l~~A  180 (272)
                      +||.....+..|++.++ -.|.+|+|+|+|+ +|..+++++...|++|+++.++...++.               ..+.+
T Consensus       158 l~~~~~ta~~~l~~~~~-~~g~~VlV~GaG~-vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~  235 (348)
T 3two_A          158 LLCAGITTYSPLKFSKV-TKGTKVGVAGFGG-LGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEEL  235 (348)
T ss_dssp             GGTHHHHHHHHHHHTTC-CTTCEEEEESCSH-HHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCE
T ss_pred             hhhhHHHHHHHHHhcCC-CCCCEEEEECCcH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCC
Confidence            45555555677766532 3699999999966 6999999999999999988766543321               11257


Q ss_pred             cEEEEecCCCccc--cCCCcCCCcEEEEeeeCC
Q 024116          181 DIVIAAAGVANLV--RGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       181 DIVIsa~g~p~~i--~~~~vk~g~vviDig~~~  211 (272)
                      |+||.++|.+..+  --+.++++-.++.+|...
T Consensus       236 D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          236 DFIISTIPTHYDLKDYLKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             EEEEECCCSCCCHHHHHTTEEEEEEEEECCCCC
T ss_pred             CEEEECCCcHHHHHHHHHHHhcCCEEEEECCCC
Confidence            8999999987433  235678888888888654

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=96.92  E-value=0.017  Score=52.67  Aligned_cols=158  Identities=10%  Similarity=0.067  Sum_probs=107.9

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCC---C-CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHH
Q 024116           10 GLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADG---C-TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKI   85 (272)
Q Consensus        10 ~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~---~-~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i   85 (272)
                      .++.+..-   .|..=--+-..++.++|.++.+..-...   . ..+-+.+..+-|+.-  +|+|.+--|-..  ....+
T Consensus        43 ~la~lF~e---~STRTR~SFe~A~~~LGg~~i~l~~~~~~S~~~kgEsl~DTarvls~~--~D~iviR~~~~~--~~~~l  115 (310)
T 3csu_A           43 VIASCFFE---ASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTY--VDAIVMRHPQEG--AARLA  115 (310)
T ss_dssp             EEEEEESS---CCHHHHHHHHHHHHTTTCEEEEESCC-----CCSHHHHHHHHHHHTTT--CSEEEEEESSTT--HHHHH
T ss_pred             EEEEEecC---CCccHHHHHHHHHHHhCCeEEEeCCCccchhhccCCcHHHHHHHHHHh--CCEEEEECCChh--HHHHH
Confidence            34444442   3555555667899999999888753332   1 346788888888875  789999877432  33333


Q ss_pred             HhcCCcccccCccccccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCC--cccHHHHHHHHHhC-CC
Q 024116           86 LDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS--NIVGLPTSLLLQRH-HA  161 (272)
Q Consensus        86 ~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~g--~~vG~~la~~L~~~-ga  161 (272)
                      -++.      ..+-.+|.|.      .+.+.||-+.+ ++.+.++. ..++|++++++|-+  +.|.+.++..+... |+
T Consensus       116 a~~~------~~vPVINag~------G~~~HPtQaLaDl~Ti~e~~-g~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~  182 (310)
T 3csu_A          116 TEFS------GNVPVLNAGD------GSNQHPTQTLLDLFTIQETQ-GRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGN  182 (310)
T ss_dssp             HHHC------TTCCEEEEEE------TTSCCHHHHHHHHHHHHHHH-SCSSSCEEEEESCTTTCHHHHHHHHHHHTSSSC
T ss_pred             HHhc------CCCCEEcCcc------CCCCCchHHHHHHHHHHHHh-CCcCCcEEEEECCCCCCchHHHHHHHHHhCCCC
Confidence            3322      1234456421      24567998888 55555555 47999999999986  35799999999999 99


Q ss_pred             EEEEEeCC---------------------CCCHhhhcCCCcEEEEec
Q 024116          162 TVSIVHAL---------------------TKNPEQITSEADIVIAAA  187 (272)
Q Consensus       162 ~V~v~~~~---------------------t~~l~~~l~~ADIVIsa~  187 (272)
                      +|+++.-.                     +.++++.+++||+|.+-.
T Consensus       183 ~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~  229 (310)
T 3csu_A          183 RFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTR  229 (310)
T ss_dssp             EEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC
T ss_pred             EEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECC
Confidence            99999632                     246778999999998764

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.92  E-value=0.00082  Score=52.98  Aligned_cols=54  Identities=15%  Similarity=0.066  Sum_probs=42.1

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------C---Hhh-hcCCCcEEEEecCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------N---PEQ-ITSEADIVIAAAGV  189 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~------------------~---l~~-~l~~ADIVIsa~g~  189 (272)
                      ++++++|+|.|. +|+.++..|.++|.+|++++++.+                  +   +++ .+.++|+||.+++.
T Consensus         5 ~~~~v~I~G~G~-iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~   80 (141)
T 3llv_A            5 GRYEYIVIGSEA-AGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSD   80 (141)
T ss_dssp             -CCSEEEECCSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSC
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCC
Confidence            467899999988 599999999999999999987631                  1   111 24678999998884

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.91  E-value=0.00063  Score=56.16  Aligned_cols=59  Identities=15%  Similarity=0.103  Sum_probs=46.3

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhC-CCEEEEEeCCCC------------------C---Hhhh--cCCCcEEEEe
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALTK------------------N---PEQI--TSEADIVIAA  186 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~-ga~V~v~~~~t~------------------~---l~~~--l~~ADIVIsa  186 (272)
                      ..++.+++++|+|.|.+ |+.++..|.+. |..|++++++..                  +   +.+.  +.++|+||.+
T Consensus        34 ~~~~~~~~v~IiG~G~~-G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~  112 (183)
T 3c85_A           34 LINPGHAQVLILGMGRI-GTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLA  112 (183)
T ss_dssp             CBCCTTCSEEEECCSHH-HHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEEC
T ss_pred             CcCCCCCcEEEECCCHH-HHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEe
Confidence            34677889999999885 99999999999 999999987521                  1   2333  6788999998


Q ss_pred             cCCC
Q 024116          187 AGVA  190 (272)
Q Consensus       187 ~g~p  190 (272)
                      ++.+
T Consensus       113 ~~~~  116 (183)
T 3c85_A          113 MPHH  116 (183)
T ss_dssp             CSSH
T ss_pred             CCCh
Confidence            8854

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.91  E-value=0.0014  Score=58.65  Aligned_cols=70  Identities=17%  Similarity=0.235  Sum_probs=52.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------------------------------CCH
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------------------------------KNP  173 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------------------------------~~l  173 (272)
                      ++|.|||.|.+ |.+++..|++.|.+|++++++.                                           .++
T Consensus        16 ~~I~VIG~G~m-G~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~   94 (302)
T 1f0y_A           16 KHVTVIGGGLM-GAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA   94 (302)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred             CEEEEECCCHH-HHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCH
Confidence            68999999885 9999999999999999998752                                           133


Q ss_pred             hhhcCCCcEEEEecCCCc-----ccc--CCCcCCCcEEEEe
Q 024116          174 EQITSEADIVIAAAGVAN-----LVR--GSWLKPGAVVLDV  207 (272)
Q Consensus       174 ~~~l~~ADIVIsa~g~p~-----~i~--~~~vk~g~vviDi  207 (272)
                      .+.+++||+||.+++...     ++.  ...++++++++..
T Consensus        95 ~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~  135 (302)
T 1f0y_A           95 ASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASN  135 (302)
T ss_dssp             HHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEEC
T ss_pred             HHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEC
Confidence            346789999999997532     111  2345777777654

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=96.88  E-value=0.0064  Score=55.01  Aligned_cols=151  Identities=15%  Similarity=0.148  Sum_probs=103.0

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEEcCCCC--CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCcc
Q 024116           21 DSQTYVRNKIKACEEVGIKSIVTEFADGC--TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF   98 (272)
Q Consensus        21 ~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~--~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~   98 (272)
                      .|..=--+-..+++++|.++.+..-....  ..+-+.+.++-|+.- .+|+|.+--|-...+.+. +-++.+       +
T Consensus        44 ~STRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~-~~D~iviR~~~~~~~~~~-la~~~~-------v  114 (291)
T 3d6n_B           44 PSTRTRLSFEKAARELGIETYLVSGSESSTVKGESFFDTLKTFEGL-GFDYVVFRVPFVFFPYKE-IVKSLN-------L  114 (291)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEETTTTSCCTTCCHHHHHHHHHHT-TCSEEEEEESSCCCSCHH-HHHTCS-------S
T ss_pred             CCccHHHHHHHHHHHhCCeEEEECCccCcccCCCcHHHHHHHHHHh-cCCEEEEEcCChHHHHHH-HHHhCC-------C
Confidence            34444445678899999999888632110  123466777777662 358999988855533321 322221       2


Q ss_pred             ccccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcC--CcccHHHHHHHHHhCCCEEEEEeCC------
Q 024116           99 HPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGR--SNIVGLPTSLLLQRHHATVSIVHAL------  169 (272)
Q Consensus        99 ~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~--g~~vG~~la~~L~~~ga~V~v~~~~------  169 (272)
                      -.+|.|      +.+.+.||=+.+ ++.+.++. -.++|++++++|-  ++.|.+.++..+...|++|+++.-.      
T Consensus       115 PVINAG------~g~~~HPtQaLaDl~Ti~e~~-g~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~  187 (291)
T 3d6n_B          115 RLVNAG------DGTHQHPSQGLIDFFTIKEHF-GEVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRD  187 (291)
T ss_dssp             EEEEEE------ETTTBCHHHHHHHHHHHHHHH-SCCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTT
T ss_pred             CEEeCc------cCCCcCcHHHHHHHHHHHHHh-CCcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCch
Confidence            344532      245577998888 45555555 4799999999998  6778999999999999999998632      


Q ss_pred             --------CCCHhhhcCCCcEEEEecC
Q 024116          170 --------TKNPEQITSEADIVIAAAG  188 (272)
Q Consensus       170 --------t~~l~~~l~~ADIVIsa~g  188 (272)
                              +.++.+.+++||+|.+ +-
T Consensus       188 ~~~~g~~~~~d~~eav~~aDvvy~-~~  213 (291)
T 3d6n_B          188 VEVFKVDVFDDVDKGIDWADVVIW-LR  213 (291)
T ss_dssp             GGGGCEEEESSHHHHHHHCSEEEE-CC
T ss_pred             HHHCCCEEEcCHHHHhCCCCEEEE-eC
Confidence                    3467889999999998 54

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.88  E-value=0.00066  Score=60.29  Aligned_cols=72  Identities=17%  Similarity=0.309  Sum_probs=54.9

Q ss_pred             ceEEEEcC-CcccHHHHHHHHHhCCCEEEEEeCCCC-------------CHhhhcCCCcEEEEecCCCc---ccc--CCC
Q 024116          137 KNAVVIGR-SNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITSEADIVIAAAGVAN---LVR--GSW  197 (272)
Q Consensus       137 k~v~ViG~-g~~vG~~la~~L~~~ga~V~v~~~~t~-------------~l~~~l~~ADIVIsa~g~p~---~i~--~~~  197 (272)
                      +++.|||. |.+ |.+++..|.+.|.+|++++++..             +..+.++++|+||.+++...   .+.  ...
T Consensus        12 m~I~iIG~tG~m-G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~aDvVi~av~~~~~~~v~~~l~~~   90 (286)
T 3c24_A           12 KTVAILGAGGKM-GARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADVVVLALPDNIIEKVAEDIVPR   90 (286)
T ss_dssp             CEEEEETTTSHH-HHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCCCSSGGGGTCSEEEECSCHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcCCHHHHhcCCCEEEEcCCchHHHHHHHHHHHh
Confidence            58999999 775 99999999999999999987631             34466789999999997432   221  134


Q ss_pred             cCCCcEEEEeee
Q 024116          198 LKPGAVVLDVGT  209 (272)
Q Consensus       198 vk~g~vviDig~  209 (272)
                      ++++.+|+|+..
T Consensus        91 l~~~~ivv~~s~  102 (286)
T 3c24_A           91 VRPGTIVLILDA  102 (286)
T ss_dssp             SCTTCEEEESCS
T ss_pred             CCCCCEEEECCC
Confidence            577899999654

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.86  E-value=0.00055  Score=62.24  Aligned_cols=95  Identities=17%  Similarity=0.048  Sum_probs=66.2

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC-------------------Hhh--
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN-------------------PEQ--  175 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~-------------------l~~--  175 (272)
                      |+.+..+...+.+..---.|++|+|+|+|+.+|..+++++...|++|+++.++...                   +.+  
T Consensus       126 ~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~  205 (340)
T 3gms_A          126 YINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETV  205 (340)
T ss_dssp             SHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHH
T ss_pred             cchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHH
Confidence            45555555555433333479999999999778999999999999999888765422                   111  


Q ss_pred             --hc--CCCcEEEEecCCCccc-cCCCcCCCcEEEEeeeCC
Q 024116          176 --IT--SEADIVIAAAGVANLV-RGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       176 --~l--~~ADIVIsa~g~p~~i-~~~~vk~g~vviDig~~~  211 (272)
                        .+  +..|+||.++|.+... ..+.++++-.++.+|...
T Consensus       206 ~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~~  246 (340)
T 3gms_A          206 MELTNGIGADAAIDSIGGPDGNELAFSLRPNGHFLTIGLLS  246 (340)
T ss_dssp             HHHTTTSCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCTT
T ss_pred             HHHhCCCCCcEEEECCCChhHHHHHHHhcCCCEEEEEeecC
Confidence              11  2579999999976532 225778888888888653

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.84  E-value=0.0016  Score=58.40  Aligned_cols=58  Identities=16%  Similarity=0.076  Sum_probs=44.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------CHhhhcCCCcEEEEecCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------NPEQITSEADIVIAAAGV  189 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~---------------~l~~~l~~ADIVIsa~g~  189 (272)
                      -+.++|+|+|.|++|.+|+.++..|+++|++|+++.|...               .+.+.++..|+||...+.
T Consensus        15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~   87 (347)
T 4id9_A           15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAF   87 (347)
T ss_dssp             ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCcc
Confidence            3568999999999888999999999999999999987641               245678899999987764

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=96.84  E-value=0.013  Score=53.17  Aligned_cols=148  Identities=13%  Similarity=0.066  Sum_probs=101.6

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEEcCCCC--CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCcc
Q 024116           21 DSQTYVRNKIKACEEVGIKSIVTEFADGC--TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF   98 (272)
Q Consensus        21 ~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~--~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~   98 (272)
                      .|..=--+-..+++++|.++.+..-....  .-+-+.+.++-|+.-  +|+|.+--|-.      .....+.  +-. .+
T Consensus        55 ~STRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~--~D~iviR~~~~------~~~~~la--~~~-~v  123 (301)
T 2ef0_A           55 PSLRTRTTLEVAMVHLGGHAVYLDQKQVGIGEREPVRDVAKNLERF--VEGIAARVFRH------ETVEALA--RHA-KV  123 (301)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEEGGGSCTTTCCCHHHHHHHHTTT--CSEEEEECSSH------HHHHHHH--HHC-SS
T ss_pred             CCcchHHHHHHHHHHcCCeEEEECCcccccCCCCchHHHHHHHHHh--CCEEEEecCCh------HHHHHHH--HHC-CC
Confidence            44444446678899999999988632210  123477777777764  68898876622      2222221  111 23


Q ss_pred             ccccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC--------
Q 024116           99 HPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL--------  169 (272)
Q Consensus        99 ~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~--------  169 (272)
                      -.+|.|       .+.+.||=+.+ ++.+.++. ..++|++++++|-++.|.+.++..|...|++|+++.-.        
T Consensus       124 PVINa~-------~~~~HPtQaLaDl~Ti~e~~-g~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~  195 (301)
T 2ef0_A          124 PVVNAL-------SDRAHPLQALADLLTLKEVF-GGLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGL  195 (301)
T ss_dssp             CEEEEE-------CSSCCHHHHHHHHHHHHHHH-SCCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHH
T ss_pred             CEEeCC-------CCccCchHHHHHHHHHHHHh-CCcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHH
Confidence            455642       24467998888 55555555 47999999999997778999999999999999999743        


Q ss_pred             --------CCCHhhhcCCCcEEEEec
Q 024116          170 --------TKNPEQITSEADIVIAAA  187 (272)
Q Consensus       170 --------t~~l~~~l~~ADIVIsa~  187 (272)
                              +.++++.+++||+|.+-.
T Consensus       196 ~~~~~~~~~~d~~eav~~aDvvy~~~  221 (301)
T 2ef0_A          196 LKRANAFFTHDPKEAALGAHALYTDV  221 (301)
T ss_dssp             HHHHTCEEESCHHHHHTTCSEEEECC
T ss_pred             HhhceeEEECCHHHHhcCCCEEEecC
Confidence                    246778999999999633

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.84  E-value=0.0028  Score=56.95  Aligned_cols=68  Identities=16%  Similarity=0.135  Sum_probs=52.5

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------------
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------------  171 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------------------  171 (272)
                      |.+++-+...+     .+++++|+|.|++|.+|+.++..|+++|.+|+++.|...                         
T Consensus        11 ~~~~~~~~~~~-----~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (351)
T 3ruf_A           11 MSRYEEITQQL-----IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIE   85 (351)
T ss_dssp             CHHHHHHHHHH-----HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEE
T ss_pred             HHHHhhHHhhC-----CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEE
Confidence            55555555443     257899999999999999999999999999999987421                         


Q ss_pred             -------CHhhhcCCCcEEEEecCC
Q 024116          172 -------NPEQITSEADIVIAAAGV  189 (272)
Q Consensus       172 -------~l~~~l~~ADIVIsa~g~  189 (272)
                             ++.+.++.+|+||...+.
T Consensus        86 ~Dl~d~~~~~~~~~~~d~Vih~A~~  110 (351)
T 3ruf_A           86 GDIRDLTTCEQVMKGVDHVLHQAAL  110 (351)
T ss_dssp             CCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             ccCCCHHHHHHHhcCCCEEEECCcc
Confidence                   134567789999988774

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=96.83  E-value=0.0013  Score=57.57  Aligned_cols=38  Identities=16%  Similarity=0.253  Sum_probs=33.7

Q ss_pred             CCCccceEEEEcCC---cccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g---~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+|+||.++|-|++   |+ |++++..|+++|++|.++.|+.
T Consensus         2 ~~l~gK~alVTGaa~~~GI-G~aiA~~la~~Ga~Vvi~~r~~   42 (256)
T 4fs3_A            2 LNLENKTYVIMGIANKRSI-AFGVAKVLDQLGAKLVFTYRKE   42 (256)
T ss_dssp             CCCTTCEEEEECCCSTTCH-HHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEECCCCCchH-HHHHHHHHHHCCCEEEEEECCH
Confidence            46899999999975   65 9999999999999999998863

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.82  E-value=0.0012  Score=55.66  Aligned_cols=53  Identities=26%  Similarity=0.208  Sum_probs=44.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------CHhhhcCCCcEEEEecCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQITSEADIVIAAAGV  189 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~--------------------~l~~~l~~ADIVIsa~g~  189 (272)
                      ++|+|.|++|.+|+.++..|+++|.+|+++.|+..                    ++.+.++..|+||.+.|.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~   77 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNP   77 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence            78999999888999999999999999999987631                    235677889999988874

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=96.81  E-value=0.0016  Score=62.93  Aligned_cols=75  Identities=16%  Similarity=0.266  Sum_probs=57.5

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhhcC---CCcEEEEecCCCcc-
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQITS---EADIVIAAAGVANL-  192 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------~~l~~~l~---~ADIVIsa~g~p~~-  192 (272)
                      -++|.|||.|.+ |.+++..|.+.|.+|++++++.                   .++.+.++   ++|+||.+++.+.. 
T Consensus         4 ~~kIgiIGlG~M-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   82 (484)
T 4gwg_A            4 QADIALIGLAVM-GQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAV   82 (484)
T ss_dssp             CBSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHH
T ss_pred             CCEEEEEChhHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHH
Confidence            368999999886 9999999999999999998864                   23344443   59999999987531 


Q ss_pred             ---cc--CCCcCCCcEEEEeeeCC
Q 024116          193 ---VR--GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       193 ---i~--~~~vk~g~vviDig~~~  211 (272)
                         +.  ...+++|.+|||.+...
T Consensus        83 ~~vl~~l~~~L~~g~iIId~st~~  106 (484)
T 4gwg_A           83 DDFIEKLVPLLDTGDIIIDGGNSE  106 (484)
T ss_dssp             HHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCCC
Confidence               21  23568899999998654

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=96.80  E-value=0.019  Score=52.41  Aligned_cols=146  Identities=13%  Similarity=0.148  Sum_probs=99.9

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCcc
Q 024116           22 SQTYVRNKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF   98 (272)
Q Consensus        22 s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~   98 (272)
                      |..=--+-..++.++|.++.+..-. +.   .-+-+.+.++-|+.-  +|+|.+--|-..  ....+-++.       .+
T Consensus        57 STRTR~SFe~A~~~LGg~~i~l~~~-~ss~~kgEsl~DTarvls~~--~D~iviR~~~~~--~~~~lA~~~-------~v  124 (315)
T 1pvv_A           57 STRTRVSFEVAMAHLGGHALYLNAQ-DLQLRRGETIADTARVLSRY--VDAIMARVYDHK--DVEDLAKYA-------TV  124 (315)
T ss_dssp             CSHHHHHHHHHHHHTTSEEEEEEGG-GSTTTTTCCHHHHHHHHTTT--CSEEEEECSSHH--HHHHHHHHC-------SS
T ss_pred             CcchHHHHHHHHHHcCCeEEEECCc-cccCCCCcCHHHHHHHHHHh--CcEEEEecCchH--HHHHHHHhC-------CC
Confidence            3333345578899999999988732 21   134577777777764  688988766221  222222221       23


Q ss_pred             ccccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC--------
Q 024116           99 HPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL--------  169 (272)
Q Consensus        99 ~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~--------  169 (272)
                      -.+|.|       .+.+.||=+.+ ++.+.++. .+++|.+++++|-++.|.+.++..|...|++|+++.-.        
T Consensus       125 PVINa~-------~~~~HPtQaLaDl~Ti~e~~-g~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~  196 (315)
T 1pvv_A          125 PVINGL-------SDFSHPCQALADYMTIWEKK-GTIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKV  196 (315)
T ss_dssp             CEEEEE-------CSSCCHHHHHHHHHHHHHHH-SCCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHH
T ss_pred             CEEcCC-------CCCCCcHHHHHHHHHHHHHh-CCcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHH
Confidence            455631       23567998888 55555555 47999999999997778999999999999999998643        


Q ss_pred             -----------------CCCHhhhcCCCcEEEEec
Q 024116          170 -----------------TKNPEQITSEADIVIAAA  187 (272)
Q Consensus       170 -----------------t~~l~~~l~~ADIVIsa~  187 (272)
                                       +.++++.+++||+|.+-.
T Consensus       197 ~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~  231 (315)
T 1pvv_A          197 IKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV  231 (315)
T ss_dssp             HHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             HHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcc
Confidence                             245678899999999743

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=96.80  E-value=0.017  Score=52.33  Aligned_cols=158  Identities=13%  Similarity=0.086  Sum_probs=104.2

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHH
Q 024116           10 GLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKIL   86 (272)
Q Consensus        10 ~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~   86 (272)
                      .++.+..-   .|..=--+-..++.++|.++.+..-....   ..+-+.+.++-|+.-  +|+|.+--|-..  ....+-
T Consensus        40 ~~~~lF~e---~STRTR~SFe~A~~~LGg~~i~l~~~~~s~~~kgEsl~DTarvls~~--~D~iviR~~~~~--~~~~la  112 (299)
T 1pg5_A           40 TISIAFFE---PSTRTYLSFQKAIINLGGDVIGFSGEESTSVAKGENLADTIRMLNNY--SDGIVMRHKYDG--ASRFAS  112 (299)
T ss_dssp             EEEEEESS---CCHHHHHHHHHHHHHTTCEEEEEECC-------CCCHHHHHHHHHHH--CSEEEEEESSBT--HHHHHH
T ss_pred             EEEEEecC---CCcchHHhHHHHHHHhCCEEEEeCCCCcccccCCCCHHHHHHHHHHh--CCEEEEeCCChh--HHHHHH
Confidence            34444442   35555556678999999999887533211   113466666666653  688988877432  333333


Q ss_pred             hcCCcccccCccccccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCC--cccHHHHHHHHHhC-CCE
Q 024116           87 DAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS--NIVGLPTSLLLQRH-HAT  162 (272)
Q Consensus        87 ~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~g--~~vG~~la~~L~~~-ga~  162 (272)
                      ++.       .+-.+|.|      +.+.+.||-+.+ ++.+.++. ..++|++++++|-+  +.|.+.++..+... |++
T Consensus       113 ~~~-------~vPVINaG------~g~~~HPtQ~LaDl~Ti~e~~-g~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~  178 (299)
T 1pg5_A          113 EIS-------DIPVINAG------DGKHEHPTQAVIDIYTINKHF-NTIDGLVFALLGDLKYARTVNSLLRILTRFRPKL  178 (299)
T ss_dssp             HHC-------SSCEEEEE------ETTTBCHHHHHHHHHHHHHHH-SCSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSE
T ss_pred             HhC-------CCCEEeCC------CCCCcCcHHHHHHHHHHHHHh-CCcCCcEEEEECCCCCCchHHHHHHHHHhCCCCE
Confidence            222       13445542      245677998888 55555555 47999999999986  45799999999999 999


Q ss_pred             EEEEeCC------------------CCCHhhhcCCCcEEEEecC
Q 024116          163 VSIVHAL------------------TKNPEQITSEADIVIAAAG  188 (272)
Q Consensus       163 V~v~~~~------------------t~~l~~~l~~ADIVIsa~g  188 (272)
                      |+++.-.                  +.++.+.+++||+|.+-.-
T Consensus       179 v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~  222 (299)
T 1pg5_A          179 VYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRI  222 (299)
T ss_dssp             EEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECC
T ss_pred             EEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCc
Confidence            9998632                  1467789999999997654

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=96.80  E-value=0.026  Score=51.30  Aligned_cols=148  Identities=11%  Similarity=0.084  Sum_probs=99.6

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCcc
Q 024116           22 SQTYVRNKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF   98 (272)
Q Consensus        22 s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~   98 (272)
                      |..=--+-..++.++|.++.+..- .+.   .-+-+.+.++-|+.- .+|+|.+--|-..  ....+-++.       .+
T Consensus        47 STRTR~SFE~A~~~LGg~~i~l~~-~~ss~~kgEsl~DTarvLs~~-~~D~iviR~~~~~--~~~~la~~~-------~v  115 (304)
T 3r7f_A           47 STRTRFSFEVAEKKLGMNVLNLDG-TSTSVQKGETLYDTIRTLESI-GVDVCVIRHSEDE--YYEELVSQV-------NI  115 (304)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEET-TSTTSCSSSCHHHHHHHHHHH-TCCEEEEECSSTT--CHHHHHHHC-------SS
T ss_pred             ChhHHHhHHHHHHHCCCeEEEECc-ccccCCCCCCHHHHHHHHHHh-cCCEEEEecCChh--HHHHHHHhC-------CC
Confidence            333333566889999999988753 111   123356666666552 3689999877433  444443332       12


Q ss_pred             ccccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCC--cccHHHHHHHHHhCCCEEEEEeCC------
Q 024116           99 HPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS--NIVGLPTSLLLQRHHATVSIVHAL------  169 (272)
Q Consensus        99 ~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~g--~~vG~~la~~L~~~ga~V~v~~~~------  169 (272)
                      -.+|.|      +.+.+.||=+.+ ++.+.++.| +++|++|+++|-+  +-|.+.++..+...|++|+++.-.      
T Consensus       116 PVINag------dg~~~HPtQaLaDl~Ti~e~~g-~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~  188 (304)
T 3r7f_A          116 PILNAG------DGCGQHPTQSLLDLMTIYEEFN-TFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEE  188 (304)
T ss_dssp             CEEESC------CTTSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTT
T ss_pred             CEEeCC------CCCCcCcHHHHHHHHHHHHHhC-CCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCcch
Confidence            344531      234577998888 455555554 7999999999986  347999999999999999998632      


Q ss_pred             -----CCCHhhhcCCCcEEEEec
Q 024116          170 -----TKNPEQITSEADIVIAAA  187 (272)
Q Consensus       170 -----t~~l~~~l~~ADIVIsa~  187 (272)
                           +.++.+.+++||+|++-.
T Consensus       189 ~~~g~~~d~~eav~~aDvvyt~~  211 (304)
T 3r7f_A          189 NTFGTYVSMDEAVESSDVVMLLR  211 (304)
T ss_dssp             CSSCEECCHHHHHHHCSEEEECC
T ss_pred             hhcCccCCHHHHhCCCCEEEecc
Confidence                 246788999999999854

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.80  E-value=0.0023  Score=60.91  Aligned_cols=77  Identities=25%  Similarity=0.337  Sum_probs=55.1

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------CCHhh---------------hcCCCcEE
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------KNPEQ---------------ITSEADIV  183 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t---------------~~l~~---------------~l~~ADIV  183 (272)
                      -.|.+..|||.|- +|.|+|..|++.|.+|++.+++.               +.+++               .+++||+|
T Consensus         9 ~~~~~~~ViGlGy-vGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvv   87 (431)
T 3ojo_A            9 HHGSKLTVVGLGY-IGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVF   87 (431)
T ss_dssp             ---CEEEEECCST-THHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEE
T ss_pred             ccCCccEEEeeCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEE
Confidence            4689999999988 59999999999999999998763               11221               14679999


Q ss_pred             EEecCCCcccc-----------------CCCcCCCcEEEEeeeCC
Q 024116          184 IAAAGVANLVR-----------------GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       184 Isa~g~p~~i~-----------------~~~vk~g~vviDig~~~  211 (272)
                      |.++|.|.-.+                 .+.+++|.+|||...-+
T Consensus        88 ii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~  132 (431)
T 3ojo_A           88 IIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIA  132 (431)
T ss_dssp             EECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCC
T ss_pred             EEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCC
Confidence            99999774211                 12467888888865443

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=96.79  E-value=0.0017  Score=58.34  Aligned_cols=68  Identities=15%  Similarity=0.171  Sum_probs=53.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeC--CC-------------------------C--CHhhhcCCCcEEEEecC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHA--LT-------------------------K--NPEQITSEADIVIAAAG  188 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~--~t-------------------------~--~l~~~l~~ADIVIsa~g  188 (272)
                      ++.|||.|.+ |.+++..|.+.|.+|++++|  +.                         .  ++.+.++++|+||.+++
T Consensus         2 ~I~iiG~G~m-G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (335)
T 1txg_A            2 IVSILGAGAM-GSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (335)
T ss_dssp             EEEEESCCHH-HHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             EEEEECcCHH-HHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence            6899999885 99999999999999999988  42                         0  33455788999999998


Q ss_pred             CCcc------ccCCCcCCCcEEEEee
Q 024116          189 VANL------VRGSWLKPGAVVLDVG  208 (272)
Q Consensus       189 ~p~~------i~~~~vk~g~vviDig  208 (272)
                      .+..      +.+  ++++.+|+++.
T Consensus        81 ~~~~~~v~~~i~~--l~~~~~vv~~~  104 (335)
T 1txg_A           81 TDGVLPVMSRILP--YLKDQYIVLIS  104 (335)
T ss_dssp             GGGHHHHHHHHTT--TCCSCEEEECC
T ss_pred             hHHHHHHHHHHhc--CCCCCEEEEEc
Confidence            6542      233  77889999984

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=96.78  E-value=0.006  Score=56.24  Aligned_cols=147  Identities=13%  Similarity=0.078  Sum_probs=99.8

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCcc
Q 024116           22 SQTYVRNKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF   98 (272)
Q Consensus        22 s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~   98 (272)
                      |..=--+-..++.++|.++.+..- .+.   ..+-+.+.++-|+.-  +|+|.+--|  .   . ..+..+.  +-. ++
T Consensus        55 STRTR~SFE~A~~~LGg~~i~l~~-~~ss~~kgEsl~DTarvLs~~--~D~IviR~~--~---~-~~~~~lA--~~~-~v  122 (333)
T 1duv_G           55 STRTRCSFEVAAYDQGARVTYLGP-SGSQIGHKESIKDTARVLGRM--YDGIQYRGY--G---Q-EIVETLA--EYA-SV  122 (333)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECS-SSSCBTTTBCHHHHHHHHTTT--CSEEEEECS--C---H-HHHHHHH--HHH-SS
T ss_pred             CccHHHHHHHHHHHcCCeEEEECC-ccccCcCCCcHHHHHHHHHHh--CCEEEEEcC--C---c-hHHHHHH--HhC-CC
Confidence            333333556889999999988853 221   134577777777764  689998766  2   2 2222221  111 23


Q ss_pred             ccccccccccCCCCCccccCCHHH-HHHHHHH-hCCCCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC------
Q 024116           99 HPLNIGNLAMRGREPLFIPCTPKG-CIELLIR-SGVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL------  169 (272)
Q Consensus        99 ~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~-~~~~l~gk~v~ViG~g-~~vG~~la~~L~~~ga~V~v~~~~------  169 (272)
                      -.+|.|       .+.+.||=+.+ ++.+.++ .|..++|.+++++|-+ ..|++.++..+...|++|+++.-.      
T Consensus       123 PVINa~-------~~~~HPtQ~LaDl~Ti~e~~~g~~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~  195 (333)
T 1duv_G          123 PVWNGL-------TNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEA  195 (333)
T ss_dssp             CEEESC-------CSSCCHHHHHHHHHHHHHHSTTCCGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCH
T ss_pred             CeEcCC-------CCCCCchHHHHHHHHHHHHhcCCCCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCH
Confidence            445531       34577998888 5555555 4548999999999987 567999999999999999998632      


Q ss_pred             -------------------CCCHhhhcCCCcEEEEec
Q 024116          170 -------------------TKNPEQITSEADIVIAAA  187 (272)
Q Consensus       170 -------------------t~~l~~~l~~ADIVIsa~  187 (272)
                                         +.++.+.+++||+|.+-+
T Consensus       196 ~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~  232 (333)
T 1duv_G          196 ALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDV  232 (333)
T ss_dssp             HHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECC
T ss_pred             HHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeCC
Confidence                               245678899999999733

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=96.77  E-value=0.021  Score=51.99  Aligned_cols=146  Identities=12%  Similarity=0.100  Sum_probs=96.8

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCCCCC---HHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCcc
Q 024116           22 SQTYVRNKIKACEEVGIKSIVTEFADGCT---EDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF   98 (272)
Q Consensus        22 s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~---~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~   98 (272)
                      |..=--+-..+++++|.++.+..-. +.+   -+-+.+.++-|+.-  +|+|.+--|-..  ....+-++.       .+
T Consensus        50 STRTR~SFe~A~~~LGg~~i~l~~~-~ss~~kgEsl~DTarvls~~--~D~iviR~~~~~--~~~~lA~~~-------~v  117 (307)
T 2i6u_A           50 STRTRFSFELGIAQLGGHAVVVDSG-STQLGRDETLQDTAKVLSRY--VDAIVWRTFGQE--RLDAMASVA-------TV  117 (307)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEEGG-GSGGGGTCCHHHHHHHHHHH--EEEEEEECSSHH--HHHHHHHHC-------SS
T ss_pred             CcchHHHHHHHHHHcCCeEEEECCc-cccCCCCCCHHHHHHHHHHh--CCEEEEecCChh--HHHHHHhhC-------CC
Confidence            3333335568899999999988632 211   12356666666553  678888766221  222222221       23


Q ss_pred             ccccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC-------
Q 024116           99 HPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL-------  169 (272)
Q Consensus        99 ~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~g-~~vG~~la~~L~~~ga~V~v~~~~-------  169 (272)
                      -.+|.|       .+.+.||=+.+ ++.+.++. .+++|++++++|-+ ..|.+.++..|...|++|+++.-.       
T Consensus       118 PVINa~-------~~~~HPtQaLaDl~Ti~e~~-g~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~  189 (307)
T 2i6u_A          118 PVINAL-------SDEFHPCQVLADLQTIAERK-GALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPS  189 (307)
T ss_dssp             CEEESC-------CSSCCHHHHHHHHHHHHHHH-SCCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHH
T ss_pred             CEEcCC-------CCCcCccHHHHHHHHHHHHh-CCcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHH
Confidence            445632       24577998888 55555555 47999999999997 567999999999999999998633       


Q ss_pred             ------------------CCCHhhhcCCCcEEEEec
Q 024116          170 ------------------TKNPEQITSEADIVIAAA  187 (272)
Q Consensus       170 ------------------t~~l~~~l~~ADIVIsa~  187 (272)
                                        +.++++.+++||+|.+-.
T Consensus       190 ~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~~  225 (307)
T 2i6u_A          190 VRAAAERRAQDTGASVTVTADAHAAAAGADVLVTDT  225 (307)
T ss_dssp             HHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             HHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEecc
Confidence                              245678899999999743

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.76  E-value=0.0016  Score=50.39  Aligned_cols=54  Identities=20%  Similarity=0.288  Sum_probs=41.3

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------C---Hh-hhcCCCcEEEEecCCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------N---PE-QITSEADIVIAAAGVA  190 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------------~---l~-~~l~~ADIVIsa~g~p  190 (272)
                      +++++|+|+|. +|+.++..|.+.|.+|++++++.+                   +   +. ..++++|+||.+++.+
T Consensus         4 ~m~i~IiG~G~-iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   80 (140)
T 1lss_A            4 GMYIIIAGIGR-VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE   80 (140)
T ss_dssp             -CEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH
T ss_pred             CCEEEEECCCH-HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCc
Confidence            57899999977 599999999999999999987521                   1   11 1256789999888764

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=96.76  E-value=0.0093  Score=54.36  Aligned_cols=170  Identities=12%  Similarity=0.034  Sum_probs=111.9

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCcc
Q 024116           22 SQTYVRNKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF   98 (272)
Q Consensus        22 s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~   98 (272)
                      |..=--+-..++.++|.++.+..-....   ..+-+.+..+-|+.-  +|+|.+--|-..  ....+-++.       .+
T Consensus        55 STRTR~SFe~A~~~LGg~~i~l~~~~~s~~~kgEsl~DTarvls~~--~D~iviR~~~~~--~~~~la~~~-------~v  123 (308)
T 1ml4_A           55 STRTRLSFESAMHRLGGAVIGFAEASTSSVKKGESLRDTIKTVEQY--CDVIVIRHPKEG--AARLAAEVA-------EV  123 (308)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEESCGGGSGGGGTCCHHHHHHHHTTT--CSEEEEEESSTT--HHHHHHHTC-------SS
T ss_pred             CchHHHHHHHHHHHhCCeEEEeCCCccccccCCCCHHHHHHHHHHh--CcEEEEecCChh--HHHHHHHhC-------CC
Confidence            4444445678899999998877532211   124577777777764  689998877332  333333322       13


Q ss_pred             ccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCC--cccHHHHHHHHHhCCCEEEEEeCC-------
Q 024116           99 HPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRS--NIVGLPTSLLLQRHHATVSIVHAL-------  169 (272)
Q Consensus        99 ~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g--~~vG~~la~~L~~~ga~V~v~~~~-------  169 (272)
                      -.+|.|.      .+.+.||=+.+=+--++++...++|++++++|-+  +.|.+.++..+...|++|+++.-.       
T Consensus       124 PVINag~------g~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~  197 (308)
T 1ml4_A          124 PVINAGD------GSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRH  197 (308)
T ss_dssp             CEEEEEE------TTSCCHHHHHHHHHHHHHHSSCSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHH
T ss_pred             CEEeCcc------CCccCcHHHHHHHHHHHHHhCCCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHH
Confidence            4455421      2456799888844444445557999999999986  347999999999999999998632       


Q ss_pred             --------------CCCHhhhcCCCcEEEEecCC----C----------cc-ccCCCc---CCCcEEEEee
Q 024116          170 --------------TKNPEQITSEADIVIAAAGV----A----------NL-VRGSWL---KPGAVVLDVG  208 (272)
Q Consensus       170 --------------t~~l~~~l~~ADIVIsa~g~----p----------~~-i~~~~v---k~g~vviDig  208 (272)
                                    +.++.+.+++||+|.+-.-.    |          .+ ++.+.+   ++++++.=..
T Consensus       198 ~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  268 (308)
T 1ml4_A          198 IVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  268 (308)
T ss_dssp             HHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             HHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCccccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCC
Confidence                          14567889999999975521    1          12 566554   5677776655

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.76  E-value=0.0028  Score=58.46  Aligned_cols=93  Identities=16%  Similarity=0.110  Sum_probs=64.7

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH--------------------hh
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP--------------------EQ  175 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l--------------------~~  175 (272)
                      +||....++..+++.++ -.|.+|+|+|+|+ +|..+++++...|++|+++.++...+                    ++
T Consensus       176 l~~~~~tA~~al~~~~~-~~g~~VlV~GaG~-vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~  253 (369)
T 1uuf_A          176 LLCAGITTYSPLRHWQA-GPGKKVGVVGIGG-LGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAA  253 (369)
T ss_dssp             GGTHHHHHHHHHHHTTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHT
T ss_pred             hhhhHHHHHHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHH
Confidence            34444445666666543 3699999999976 69999999999999988877543211                    12


Q ss_pred             hcCCCcEEEEecCCCccc--cCCCcCCCcEEEEeeeC
Q 024116          176 ITSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       176 ~l~~ADIVIsa~g~p~~i--~~~~vk~g~vviDig~~  210 (272)
                      ....+|+||.++|.+..+  --+.++++-.++.+|..
T Consensus       254 ~~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~  290 (369)
T 1uuf_A          254 HLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAP  290 (369)
T ss_dssp             TTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC
T ss_pred             hhcCCCEEEECCCCHHHHHHHHHHhccCCEEEEeccC
Confidence            224679999999987543  23567887778888864

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=96.75  E-value=0.0036  Score=55.39  Aligned_cols=40  Identities=18%  Similarity=0.229  Sum_probs=36.5

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +.+|+||.++|-|++.=+|++++..|+++|++|.++.|+.
T Consensus         2 ~~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~   41 (258)
T 4gkb_A            2 DLNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHA   41 (258)
T ss_dssp             CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCc
Confidence            4679999999999988889999999999999999998874

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=96.75  E-value=0.0029  Score=54.58  Aligned_cols=40  Identities=23%  Similarity=0.262  Sum_probs=36.0

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK  171 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~  171 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+..
T Consensus         8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~   47 (265)
T 2o23_A            8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNS   47 (265)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            4578999999999998999999999999999999987653

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=96.74  E-value=0.0032  Score=55.40  Aligned_cols=56  Identities=18%  Similarity=0.264  Sum_probs=45.6

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH------------------------hhhcCCCcEEEEecCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP------------------------EQITSEADIVIAAAGV  189 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l------------------------~~~l~~ADIVIsa~g~  189 (272)
                      ++||.++|-|++.=+|++++..|+++|++|.++.++.+.+                        -+...+-|++|+..|.
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNNAGi   88 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEALPRLDVLVNNAGI   88 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence            5899999999988889999999999999999998864221                        2445667888887774

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.73  E-value=0.0016  Score=54.83  Aligned_cols=54  Identities=15%  Similarity=0.189  Sum_probs=44.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHH-hCCCEEEEEeCCCC------------------------CHhhhcCCCcEEEEecCCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQ-RHHATVSIVHALTK------------------------NPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~-~~ga~V~v~~~~t~------------------------~l~~~l~~ADIVIsa~g~p  190 (272)
                      |+++|.|+++-+|+.++..|+ ++|++|+++.|+..                        ++.+.++.+|+||+..|..
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~   84 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMES   84 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCC
Confidence            679999988878999999999 89999999987633                        1245677889999888864

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=96.72  E-value=0.0019  Score=62.59  Aligned_cols=74  Identities=19%  Similarity=0.216  Sum_probs=56.6

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhhcCC---CcEEEEecCCCcc-
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQITSE---ADIVIAAAGVANL-  192 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------~~l~~~l~~---ADIVIsa~g~p~~-  192 (272)
                      .++|.|||.|.+ |.+++..|++.|.+|++++|+.                   .++.+.++.   +|+||.+++.+.. 
T Consensus        10 ~~~IgvIGlG~M-G~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   88 (497)
T 2p4q_A           10 SADFGLIGLAVM-GQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPV   88 (497)
T ss_dssp             CCSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHH
T ss_pred             CCCEEEEeeHHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHH
Confidence            468999999886 9999999999999999998864                   134454554   9999999987531 


Q ss_pred             ---cc--CCCcCCCcEEEEeeeC
Q 024116          193 ---VR--GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       193 ---i~--~~~vk~g~vviDig~~  210 (272)
                         +.  ...+++|.+|||++..
T Consensus        89 ~~vl~~l~~~l~~g~iIId~s~~  111 (497)
T 2p4q_A           89 DALINQIVPLLEKGDIIIDGGNS  111 (497)
T ss_dssp             HHHHHHHGGGCCTTCEEEECSCC
T ss_pred             HHHHHHHHHhCCCCCEEEECCCC
Confidence               21  2356789999998743

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=96.72  E-value=0.04  Score=50.10  Aligned_cols=171  Identities=9%  Similarity=0.073  Sum_probs=109.3

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEEcCCCCC---HHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCc
Q 024116           21 DSQTYVRNKIKACEEVGIKSIVTEFADGCT---EDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG   97 (272)
Q Consensus        21 ~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~---~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg   97 (272)
                      .|..=--+-..++.++|.++.+..-+.+.+   -+-+.+.++-|+.-  +|+|.+--|-..  ....+-++.       .
T Consensus        50 ~STRTR~SFe~A~~~LGg~~i~l~~~~~ss~~kgEsl~DTarvls~~--~D~iviR~~~~~--~~~~lA~~~-------~  118 (306)
T 4ekn_B           50 PSTRTRLSFETAMKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGY--ADIIVLRHPSEG--AARLASEYS-------Q  118 (306)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECCCTTTTSSSSCCHHHHHHHHHHH--CSEEEEECSSTT--HHHHHHHHC-------S
T ss_pred             CChhHHhhHHHHHHHcCCEEEEcCCcccccCCCCCCHHHHHHHHHHh--CcEEEEEcCChH--HHHHHHHhC-------C
Confidence            344444466788999999988774212221   23355566655553  578988877443  333332222       1


Q ss_pred             cccccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCC--cccHHHHHHHHHhC-CCEEEEEeCC----
Q 024116           98 FHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS--NIVGLPTSLLLQRH-HATVSIVHAL----  169 (272)
Q Consensus        98 ~~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~g--~~vG~~la~~L~~~-ga~V~v~~~~----  169 (272)
                      +-.+|.     | +.+.+.||=+.+ ++.+.++.| .++|++|+++|-+  +-|.+.++..+... |++|+++.-.    
T Consensus       119 vPVINa-----g-~g~~~HPtQ~LaDl~Ti~e~~g-~l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~  191 (306)
T 4ekn_B          119 VPIINA-----G-DGSNQHPTQTLLDLYTIMREIG-RIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRL  191 (306)
T ss_dssp             SCEEES-----C-SSSSCCHHHHHHHHHHHHHHHS-CSTTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCC
T ss_pred             CCEEeC-----C-CCCCcCcHHHHHHHHHHHHHhC-CcCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCccccc
Confidence            234453     1 234577998888 555555554 7999999999986  34799999999999 9999998632    


Q ss_pred             -----------------CCCHhhhcCCCcEEEEecCC----C----------cc-ccCCCcC-CCcEEEEeee
Q 024116          170 -----------------TKNPEQITSEADIVIAAAGV----A----------NL-VRGSWLK-PGAVVLDVGT  209 (272)
Q Consensus       170 -----------------t~~l~~~l~~ADIVIsa~g~----p----------~~-i~~~~vk-~g~vviDig~  209 (272)
                                       +.++.+.+++||+|++....    +          .+ ++.+.++ +++++.=...
T Consensus       192 ~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~~q~er~~~~~e~~~~~~~y~v~~~~l~~~~ai~mH~lP  264 (306)
T 4ekn_B          192 PKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQKERFPDPNEYEKVKGSYKIKREYVEGKKFIIMHPLP  264 (306)
T ss_dssp             CHHHHHHHHHTTCCEEEESCGGGCCTTCSEEEECCCCGGGCCSHHHHHHHHHHHCBCHHHHTTCCCEEECCSC
T ss_pred             CHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEeCCcccccCCCHHHHHHhccCcEECHHHHcCCCCEEECCCC
Confidence                             24677889999999976431    1          12 4555443 6667766653

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.72  E-value=0.0033  Score=54.49  Aligned_cols=59  Identities=25%  Similarity=0.307  Sum_probs=45.1

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------CCHhh---hcCCCcEEEEecCC
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------KNPEQ---ITSEADIVIAAAGV  189 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t----------------~~l~~---~l~~ADIVIsa~g~  189 (272)
                      ..+++||+++|.|+++-+|+.++..|+++|++|+++.|+.                .++++   .+...|+||+..|.
T Consensus        14 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~iD~lv~~Ag~   91 (249)
T 1o5i_A           14 ELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGG   91 (249)
T ss_dssp             --CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECCCC
T ss_pred             HhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCeEEEeeHHHHHHHHHHHhcCCCEEEECCCC
Confidence            4578999999999988899999999999999999988753                12222   22367888877773

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=96.71  E-value=0.023  Score=51.78  Aligned_cols=148  Identities=14%  Similarity=0.038  Sum_probs=99.8

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCc
Q 024116           21 DSQTYVRNKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG   97 (272)
Q Consensus        21 ~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg   97 (272)
                      .|..=--+=..++.++|.++.+..- .+.   .-+-+.+.++-|+.-  +|+|.+--|-.      ..+..+..  - -.
T Consensus        46 ~STRTR~SFe~A~~~LGg~~i~l~~-~~ss~~kgEsl~DTarvls~~--~D~iviR~~~~------~~~~~lA~--~-~~  113 (307)
T 3tpf_A           46 NSTRTRMAFELAITELGGKALFLSS-NDLQLSRGEPVKDTARVIGAM--VDFVMMRVNKH------ETLLEFAR--Y-SK  113 (307)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECT-TTCCTTTSSCHHHHHHHHHHH--SSEEEEECSCH------HHHHHHHH--H-CS
T ss_pred             CCcchHHhHHHHHHHcCCeEEEcCc-ccccCCCCCCHHHHHHHHHHh--CCEEEEecCCh------HHHHHHHH--h-CC
Confidence            3444344567889999999987652 221   134466677766664  78999876622      22222211  1 12


Q ss_pred             cccccccccccCCCCCccccCCHHHHHHHHHHhCCCCc-cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------
Q 024116           98 FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIM-GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------  170 (272)
Q Consensus        98 ~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~-gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t------  170 (272)
                      +-.+|.|.       +.+.||=+.+=+--+++...+++ |++++++|-++.|.+.++..+...|++|+++.-..      
T Consensus       114 vPVINag~-------~~~HPtQaLaDl~Ti~e~~g~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~  186 (307)
T 3tpf_A          114 APVINALS-------ELYHPTQVLGDLFTIKEWNKMQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPE  186 (307)
T ss_dssp             SCEEEEEC-------SSCCHHHHHHHHHHHHHTTCCGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHH
T ss_pred             CCEEeCCC-------CCcCcHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHH
Confidence            34556532       34679988884444445555899 99999999998899999999999999999986431      


Q ss_pred             -------------------CCHhhhcCCCcEEEEec
Q 024116          171 -------------------KNPEQITSEADIVIAAA  187 (272)
Q Consensus       171 -------------------~~l~~~l~~ADIVIsa~  187 (272)
                                         .++.+.+++||+|.+-+
T Consensus       187 ~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~~  222 (307)
T 3tpf_A          187 IWEFAMKQALISGAKISLGYDKFEALKDKDVVITDT  222 (307)
T ss_dssp             HHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECC
T ss_pred             HHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecC
Confidence                               35678899999998765

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=96.71  E-value=0.031  Score=51.56  Aligned_cols=140  Identities=9%  Similarity=0.069  Sum_probs=93.3

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCcccccccc
Q 024116           28 NKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIG  104 (272)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~~~~n~g  104 (272)
                      +=..++.++|.++.+..- .+.   ..|-+.+.++-|+.-  +|+|.+--|-..  ....+-++.       ++-.+|.|
T Consensus        80 SFE~A~~~LGg~~i~l~~-~~ssl~kgEsl~DTarvLs~~--~D~IviR~~~~~--~~~~lA~~~-------~vPVINag  147 (339)
T 4a8t_A           80 SFETAMEQLGGHGEYLAP-GQIQLGGHETIEDTSRVLSRL--VDILMARVERHH--SIVDLANCA-------TIPVINGM  147 (339)
T ss_dssp             HHHHHHHHTTCEEEEECC-C-CCSSSSSCHHHHHHHHHHH--CSEEEEECSSHH--HHHHHHHHC-------SSCEEECC
T ss_pred             HHHHHHHHcCCeEEEeCc-ccccCCCCcCHHHHHHHHHHh--CCEEEEecCcHH--HHHHHHHhC-------CCCEEECC
Confidence            556789999999987642 111   123466666666653  688988766221  112222221       23445642


Q ss_pred             ccccCCCCCccccCCHHH-HHHHHHHh--CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-----------
Q 024116          105 NLAMRGREPLFIPCTPKG-CIELLIRS--GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------  170 (272)
Q Consensus       105 ~l~~~~~~~~~~p~Ta~g-~~~~l~~~--~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-----------  170 (272)
                             .+.+.||=+.+ ++.+.++.  |.+++|++|+++|-++.|.+.++..+...|++|+++.-..           
T Consensus       148 -------~~~~HPtQaLaDl~Ti~e~~~~G~~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~  220 (339)
T 4a8t_A          148 -------SDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKL  220 (339)
T ss_dssp             -------CSSCCHHHHHHHHHHHHHTCCTTCCGGGCEEEEESSCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHH
T ss_pred             -------CCCcCcHHHHHHHHHHHHHhhcCCCCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHH
Confidence                   24567998888 44555444  3379999999999988899999999999999999986432           


Q ss_pred             --------------CCHhhhcCCCcEEEEec
Q 024116          171 --------------KNPEQITSEADIVIAAA  187 (272)
Q Consensus       171 --------------~~l~~~l~~ADIVIsa~  187 (272)
                                    .+++ .+++||+|++-+
T Consensus       221 ~~~a~~~g~~v~~~~d~~-av~~aDvvytd~  250 (339)
T 4a8t_A          221 AKNCEVSGGSFLVTDDAS-SVEGADFLYTDV  250 (339)
T ss_dssp             HHHHHHHCCEEEEECCGG-GGTTCSEEEECC
T ss_pred             HHHHHHcCCEEEEECChh-HHcCCCEEEecC
Confidence                          3456 789999999743

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.71  E-value=0.0017  Score=54.60  Aligned_cols=53  Identities=13%  Similarity=0.145  Sum_probs=43.4

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------CHhhhcCCCcEEEEecCCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~--------------------~l~~~l~~ADIVIsa~g~p  190 (272)
                      +|+|.|+++.+|+.++..|+++|++|+++.|+..                    ++.+.++..|+||...|..
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~   74 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSG   74 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCT
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCC
Confidence            7999999888999999999999999999987631                    2345667789999887743

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=96.70  E-value=0.023  Score=52.41  Aligned_cols=148  Identities=14%  Similarity=0.099  Sum_probs=99.4

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCc
Q 024116           21 DSQTYVRNKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG   97 (272)
Q Consensus        21 ~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg   97 (272)
                      .|..=--+-..++.++|.++.+..- .+.   ..+-+.+.++-|+.-  +|+|.+--|-.      ..+..+.  +-. +
T Consensus        55 ~STRTR~SFE~A~~~LGg~~i~l~~-~~ss~~kgEsl~DTarvLs~~--~D~IviR~~~~------~~~~~lA--~~s-~  122 (335)
T 1dxh_A           55 TSTRTRCAFEVAAYDQGANVTYIDP-NSSQIGHKESMKDTARVLGRM--YDAIEYRGFKQ------EIVEELA--KFA-G  122 (335)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECT-TTCCBTTTBCHHHHHHHHHHH--CSEEEEECSCH------HHHHHHH--HHS-S
T ss_pred             CCcchHHHHHHHHHHcCCeEEEECC-ccccCcCCCcHHHHHHHHHhh--CCEEEEecCCh------hHHHHHH--HhC-C
Confidence            4444444667889999999988863 222   123466666666664  68888876622      2222221  111 2


Q ss_pred             cccccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC------
Q 024116           98 FHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL------  169 (272)
Q Consensus        98 ~~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~g-~~vG~~la~~L~~~ga~V~v~~~~------  169 (272)
                      +-.+|.|       .+.+.||=+.+ ++.+.++.|.+++|++++++|-+ ..|++.++..+...|++|+++.-.      
T Consensus       123 vPVINa~-------~~~~HPtQ~LaDl~Ti~e~~g~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~  195 (335)
T 1dxh_A          123 VPVFNGL-------TDEYHPTQMLADVLTMREHSDKPLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHD  195 (335)
T ss_dssp             SCEEEEE-------CSSCCHHHHHHHHHHHHHTCSSCGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCH
T ss_pred             CCEEcCC-------CCCCCcHHHHHHHHHHHHHcCCCcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCH
Confidence            4455632       24577998888 44444444438999999999997 567999999999999999998632      


Q ss_pred             -------------------CCCHhhhcCCCcEEEEec
Q 024116          170 -------------------TKNPEQITSEADIVIAAA  187 (272)
Q Consensus       170 -------------------t~~l~~~l~~ADIVIsa~  187 (272)
                                         +.++.+.+++||+|.+-+
T Consensus       196 ~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~  232 (335)
T 1dxh_A          196 EFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDV  232 (335)
T ss_dssp             HHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             HHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeCC
Confidence                               245678899999999633

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.70  E-value=0.002  Score=54.62  Aligned_cols=56  Identities=11%  Similarity=-0.004  Sum_probs=45.9

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhC--CCEEEEEeCCC--------------------CCHhhhcCCCcEEEEecCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALT--------------------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~--ga~V~v~~~~t--------------------~~l~~~l~~ADIVIsa~g~  189 (272)
                      .++|+++|.|+++.+|+.++..|+++  |++|+++.|+.                    .++.+.++..|+||...|.
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   79 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA   79 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence            46899999999888999999999999  79999988752                    1244667788999988774

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.70  E-value=0.0019  Score=61.74  Aligned_cols=72  Identities=25%  Similarity=0.304  Sum_probs=54.4

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------------------------CCHhhhcCCCcE
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------------KNPEQITSEADI  182 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t----------------------------------~~l~~~l~~ADI  182 (272)
                      .+|.|||.|. +|.+++..|++.|.+|++++++.                                  .++.+.+++||+
T Consensus         3 mkI~VIG~G~-vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDv   81 (450)
T 3gg2_A            3 LDIAVVGIGY-VGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADI   81 (450)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSE
T ss_pred             CEEEEECcCH-HHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCE
Confidence            5899999987 59999999999999999998652                                  134456889999


Q ss_pred             EEEecCCCc---------ccc------CCCcCCCcEEEEeee
Q 024116          183 VIAAAGVAN---------LVR------GSWLKPGAVVLDVGT  209 (272)
Q Consensus       183 VIsa~g~p~---------~i~------~~~vk~g~vviDig~  209 (272)
                      ||.+++.|.         .+.      ...++++.+||+...
T Consensus        82 ViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~ST  123 (450)
T 3gg2_A           82 IFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKST  123 (450)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             EEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeee
Confidence            999998772         110      123577888887653

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.69  E-value=0.0013  Score=59.94  Aligned_cols=95  Identities=19%  Similarity=0.140  Sum_probs=60.4

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC------------------Hhh---
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN------------------PEQ---  175 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~------------------l~~---  175 (272)
                      |+....++..+.+...--.|++|+|.|+++.+|..+++++...|++|+++.++...                  +.+   
T Consensus       141 ~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~  220 (342)
T 4eye_A          141 IANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVR  220 (342)
T ss_dssp             TTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHH
T ss_pred             hhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHH
Confidence            44444455555443333479999999995557999999999999999888765321                  111   


Q ss_pred             -hc--CCCcEEEEecCCCcc-ccCCCcCCCcEEEEeeeCC
Q 024116          176 -IT--SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       176 -~l--~~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~~~  211 (272)
                       ..  +..|+||.++|.+.+ ---+.++++-.++.+|...
T Consensus       221 ~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~~  260 (342)
T 4eye_A          221 EATGGAGVDMVVDPIGGPAFDDAVRTLASEGRLLVVGFAA  260 (342)
T ss_dssp             HHTTTSCEEEEEESCC--CHHHHHHTEEEEEEEEEC----
T ss_pred             HHhCCCCceEEEECCchhHHHHHHHhhcCCCEEEEEEccC
Confidence             12  248999999997643 1234677777788888543

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.69  E-value=0.014  Score=53.30  Aligned_cols=147  Identities=12%  Similarity=0.110  Sum_probs=99.7

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCc
Q 024116           21 DSQTYVRNKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG   97 (272)
Q Consensus        21 ~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg   97 (272)
                      .|..=--+=..++.++|.++.+..- .+.   .-+-+.+.++-|+.-  +|+|.+--|-.      ..+..+..  - -.
T Consensus        55 ~STRTR~SFE~A~~~LGg~~i~l~~-~~ss~~kgEsl~DTarvls~~--~D~iviR~~~~------~~~~~lA~--~-~~  122 (309)
T 4f2g_A           55 SSTRTRLSFEAGIFQLGGHAVFMST-RDTQLGRGEPVEDSAQVISRM--VDIIMIRTFEQ------DIIQRFAE--N-SR  122 (309)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECC-SSCEETBEECHHHHHHHHHHH--CSEEEEECSCH------HHHHHHHH--T-CS
T ss_pred             CChhhHhhHHHHHHHcCCeEEEcCc-ccccCCCCCCHHHHHHHHHHh--CCEEEEecCCH------HHHHHHHH--h-CC
Confidence            3444444566789999999887652 221   133466666666664  68898876622      22222211  1 12


Q ss_pred             cccccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC-------
Q 024116           98 FHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-------  169 (272)
Q Consensus        98 ~~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~-------  169 (272)
                      +-.+|.|       .+.+.||=+.+ ++.+.++.| +++|++++++|-++.|.+.++..|...|++|+++.-.       
T Consensus       123 vPVINag-------~~~~HPtQaLaDl~Ti~e~~g-~l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~  194 (309)
T 4f2g_A          123 VPVINGL-------TNEYHPCQVLADIFTYYEHRG-PIRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAK  194 (309)
T ss_dssp             SCEEEEE-------CSSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCGG
T ss_pred             CCEEECC-------CCccCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCHH
Confidence            3455653       23467998888 555555554 7999999999999989999999999999999998532       


Q ss_pred             ------------CCCHhhhcCCCcEEEEec
Q 024116          170 ------------TKNPEQITSEADIVIAAA  187 (272)
Q Consensus       170 ------------t~~l~~~l~~ADIVIsa~  187 (272)
                                  +.++.+.+++||+|++-+
T Consensus       195 ~~~~~~g~~v~~~~d~~eav~~aDvvyt~~  224 (309)
T 4f2g_A          195 LVDAESAPFYQVFDDPNEACKGADLVTTDV  224 (309)
T ss_dssp             GSCGGGGGGEEECSSHHHHTTTCSEEEECC
T ss_pred             HHHHHcCCeEEEEcCHHHHhcCCCEEEecc
Confidence                        246788999999999754

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=96.68  E-value=0.0019  Score=62.02  Aligned_cols=73  Identities=21%  Similarity=0.274  Sum_probs=56.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------------CCHhhhcCC---CcEEEEecCCCc----
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------------KNPEQITSE---ADIVIAAAGVAN----  191 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t------------------~~l~~~l~~---ADIVIsa~g~p~----  191 (272)
                      ++|.|||.|.+ |.+++..|.+.|.+|++++|+.                  .++++.++.   +|+||.+++.+.    
T Consensus         6 ~~IgvIG~G~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~   84 (474)
T 2iz1_A            6 ANFGVVGMAVM-GKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDA   84 (474)
T ss_dssp             BSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHH
T ss_pred             CcEEEEeeHHH-HHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHH
Confidence            57999999885 9999999999999999998752                  234455554   999999998753    


Q ss_pred             ccc--CCCcCCCcEEEEeeeC
Q 024116          192 LVR--GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       192 ~i~--~~~vk~g~vviDig~~  210 (272)
                      .+.  ...+++|.+|||++..
T Consensus        85 vl~~l~~~l~~g~iiId~s~~  105 (474)
T 2iz1_A           85 TIKSLLPLLDIGDILIDGGNT  105 (474)
T ss_dssp             HHHHHGGGCCTTCEEEECSCC
T ss_pred             HHHHHHhhCCCCCEEEECCCC
Confidence            121  2356789999998744

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.67  E-value=0.0029  Score=56.73  Aligned_cols=58  Identities=9%  Similarity=0.056  Sum_probs=46.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------------CHhhhcC--CCcEEEEe
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------NPEQITS--EADIVIAA  186 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-----------------------~l~~~l~--~ADIVIsa  186 (272)
                      .+++|++|+|.|+++.+|+.++..|+++|++|+++.|...                       ++.+.++  ..|+||..
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~   95 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHS   95 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEEC
Confidence            4678999999999888999999999999999999887421                       1234555  78999988


Q ss_pred             cCC
Q 024116          187 AGV  189 (272)
Q Consensus       187 ~g~  189 (272)
                      .|.
T Consensus        96 A~~   98 (330)
T 2pzm_A           96 AAA   98 (330)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            774

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.67  E-value=0.0016  Score=55.74  Aligned_cols=57  Identities=16%  Similarity=0.132  Sum_probs=46.4

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCCC---------------------CHhhhcCCCcEEEEecCCCc
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK---------------------NPEQITSEADIVIAAAGVAN  191 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t~---------------------~l~~~l~~ADIVIsa~g~p~  191 (272)
                      ..|+|+|.|+++-+|+.++..|+++| ++|+++.|+..                     ++.+.++.+|+||++.|.+.
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~  100 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGED  100 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTT
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCc
Confidence            45899999988888999999999999 89999987631                     23466788999998877543

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.67  E-value=0.0019  Score=57.16  Aligned_cols=38  Identities=18%  Similarity=0.215  Sum_probs=35.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+|+||.++|-|++.=+|++++..|+++|++|.+++++
T Consensus         3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~   40 (254)
T 4fn4_A            3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELL   40 (254)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            47899999999998888999999999999999999886

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.66  E-value=0.0012  Score=59.40  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=32.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      ++++||+|+|||.|. ||...+..|+..|+.|+|+..
T Consensus         9 ~~l~~k~VLVVGgG~-va~rka~~Ll~~Ga~VtViap   44 (274)
T 1kyq_A            9 HQLKDKRILLIGGGE-VGLTRLYKLMPTGCKLTLVSP   44 (274)
T ss_dssp             ECCTTCEEEEEEESH-HHHHHHHHHGGGTCEEEEEEE
T ss_pred             EEcCCCEEEEECCcH-HHHHHHHHHHhCCCEEEEEcC
Confidence            578999999999998 599999999999999999864

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.66  E-value=0.0026  Score=60.86  Aligned_cols=73  Identities=21%  Similarity=0.238  Sum_probs=54.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhC--CCEEEEEeCCC---------------------------------CCHhhhcCCCc
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALT---------------------------------KNPEQITSEAD  181 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~--ga~V~v~~~~t---------------------------------~~l~~~l~~AD  181 (272)
                      ++|.|||.|.+ |.+++..|++.  |.+|++++++.                                 .++.+.+++||
T Consensus         6 mkI~VIG~G~m-G~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aD   84 (467)
T 2q3e_A            6 KKICCIGAGYV-GGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEAD   84 (467)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred             cEEEEECCCHH-HHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCC
Confidence            58999999885 99999999998  78999998752                                 12234567899


Q ss_pred             EEEEecCCCcccc--------------------CCCcCCCcEEEEeeeC
Q 024116          182 IVIAAAGVANLVR--------------------GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       182 IVIsa~g~p~~i~--------------------~~~vk~g~vviDig~~  210 (272)
                      +||.+++.|.-.+                    ...++++.+|||....
T Consensus        85 vViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv  133 (467)
T 2q3e_A           85 LVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTV  133 (467)
T ss_dssp             EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCC
T ss_pred             EEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcC
Confidence            9999998664221                    1245778899987543

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.65  E-value=0.0033  Score=59.71  Aligned_cols=126  Identities=17%  Similarity=0.190  Sum_probs=69.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---CHhhhcCCCcEEEEecC-CCccccCCCcCC--CcEEEE
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---NPEQITSEADIVIAAAG-VANLVRGSWLKP--GAVVLD  206 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~---~l~~~l~~ADIVIsa~g-~p~~i~~~~vk~--g~vviD  206 (272)
                      +++||++.|||.|++ |+++|.+|.++|++|++++++..   ...+.+++..+-+. .| .|.    +.+..  ..+|+-
T Consensus         6 ~~~~k~v~viG~G~s-G~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~-~g~~~~----~~~~~~~d~vv~s   79 (451)
T 3lk7_A            6 TFENKKVLVLGLARS-GEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVV-CGSHPL----ELLDEDFCYMIKN   79 (451)
T ss_dssp             TTTTCEEEEECCTTT-HHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEE-ESCCCG----GGGGSCEEEEEEC
T ss_pred             hcCCCEEEEEeeCHH-HHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEE-ECCChH----HhhcCCCCEEEEC
Confidence            578999999999997 99999999999999999998542   12223332222221 12 111    11111  234444


Q ss_pred             eeeCCCCCCCCCCCCCCceEecccchhhhhhhceEeccCCCcccHHHHHHHHHHHHHHH
Q 024116          207 VGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA  265 (272)
Q Consensus       207 ig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~  265 (272)
                      -|+++...........+-++.++.++-.-..+. .+--|-|--|.=|+.-|+.+++++.
T Consensus        80 pgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~-~~IaVTGTnGKTTTt~ml~~iL~~~  137 (451)
T 3lk7_A           80 PGIPYNNPMVKKALEKQIPVLTEVELAYLVSES-QLIGITGSNGKTTTTTMIAEVLNAG  137 (451)
T ss_dssp             TTSCTTSHHHHHHHHTTCCEECHHHHHHHHCCS-EEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred             CcCCCCChhHHHHHHCCCcEEeHHHHHHHhcCC-CEEEEECCCCHHHHHHHHHHHHHhc
Confidence            444432100000000122467776652211111 2223568888999999999888754

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=96.65  E-value=0.0018  Score=57.73  Aligned_cols=92  Identities=13%  Similarity=0.129  Sum_probs=60.6

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC--------------------Hhhh
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN--------------------PEQI  176 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~--------------------l~~~  176 (272)
                      |+....++..+.+.. --.|++|+|+|+++.+|..+++++...|++|+.+.++...                    +.+.
T Consensus       108 ~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~  186 (302)
T 1iz0_A          108 PVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKA  186 (302)
T ss_dssp             HHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHH
T ss_pred             hhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHH
Confidence            333344556665555 3479999999996667999999999999999888775321                    1122


Q ss_pred             cCCCcEEEEecCCCcc-ccCCCcCCCcEEEEeeeC
Q 024116          177 TSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       177 l~~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~~  210 (272)
                      ++.+|+||. +|.+.+ ---+.++++-.++.+|..
T Consensus       187 ~~~~d~vid-~g~~~~~~~~~~l~~~G~~v~~g~~  220 (302)
T 1iz0_A          187 WGGLDLVLE-VRGKEVEESLGLLAHGGRLVYIGAA  220 (302)
T ss_dssp             TTSEEEEEE-CSCTTHHHHHTTEEEEEEEEEC---
T ss_pred             hcCceEEEE-CCHHHHHHHHHhhccCCEEEEEeCC
Confidence            356799999 887432 123456777677788754

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=96.65  E-value=0.0012  Score=57.58  Aligned_cols=56  Identities=13%  Similarity=0.155  Sum_probs=46.6

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------CHhhhcCCCcEEEEecCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------NPEQITSEADIVIAAAGV  189 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~------------------~l~~~l~~ADIVIsa~g~  189 (272)
                      +++|+|+|.|+++-+|+.++..|+++|++|+++.|...                  ++.+.++..|+||...|.
T Consensus         1 m~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~   74 (267)
T 3rft_A            1 MAMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVAGCDGIVHLGGI   74 (267)
T ss_dssp             CCEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHcCCCEEEECCCC
Confidence            35789999999888999999999999999999887631                  235677889999988775

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=96.65  E-value=0.0019  Score=58.14  Aligned_cols=93  Identities=18%  Similarity=0.139  Sum_probs=63.5

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC------------------CCC-Hhhhc
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL------------------TKN-PEQIT  177 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~------------------t~~-l~~~l  177 (272)
                      |+.....+..++..+ --.|.+|+|+|+++.+|..+++++...|++|+.+.+.                  ..+ +.+.+
T Consensus       135 ~~~~~ta~~al~~~~-~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~  213 (321)
T 3tqh_A          135 PTAGLTALQALNQAE-VKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLKALGAEQCINYHEEDFLLAIS  213 (321)
T ss_dssp             HHHHHHHHHHHHHTT-CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHTCSEEEETTTSCHHHHCC
T ss_pred             hhHHHHHHHHHHhcC-CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccchHHHHHHcCCCEEEeCCCcchhhhhc
Confidence            443334555564433 3479999999855557999999999999988765432                  234 55666


Q ss_pred             CCCcEEEEecCCCcc-ccCCCcCCCcEEEEeeeC
Q 024116          178 SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       178 ~~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~~  210 (272)
                      +.+|+||.++|.+.. -.-+.++++-.++.+|..
T Consensus       214 ~g~D~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~  247 (321)
T 3tqh_A          214 TPVDAVIDLVGGDVGIQSIDCLKETGCIVSVPTI  247 (321)
T ss_dssp             SCEEEEEESSCHHHHHHHGGGEEEEEEEEECCST
T ss_pred             cCCCEEEECCCcHHHHHHHHhccCCCEEEEeCCC
Confidence            778999999997654 123466777777777743

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=96.64  E-value=0.0029  Score=54.17  Aligned_cols=37  Identities=30%  Similarity=0.452  Sum_probs=34.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~   40 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRK   40 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCC
Confidence            4689999999998889999999999999999999887

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.64  E-value=0.0026  Score=60.79  Aligned_cols=59  Identities=14%  Similarity=0.214  Sum_probs=48.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-C-----------------HhhhcCCCcEEEEecCCCc
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-N-----------------PEQITSEADIVIAAAGVAN  191 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-~-----------------l~~~l~~ADIVIsa~g~p~  191 (272)
                      ++++||+|+|+|.|.. |...+..|.+.|+.|+++..... +                 -.+.+..+|+||.++|.|.
T Consensus         8 ~~l~~~~vlVvGgG~v-a~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at~~~~   84 (457)
T 1pjq_A            8 CQLRDRDCLIVGGGDV-AERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDT   84 (457)
T ss_dssp             ECCBTCEEEEECCSHH-HHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCHH
T ss_pred             EECCCCEEEEECCCHH-HHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccccCCccEEEEcCCCHH
Confidence            5789999999999985 99999999999999999976421 1                 1245678999999999763

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=96.63  E-value=0.0014  Score=58.11  Aligned_cols=72  Identities=21%  Similarity=0.345  Sum_probs=54.6

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhC--CCEEEEEeCCC----------------CCHhhhcCCCcEEEEecCCCc---ccc-
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALT----------------KNPEQITSEADIVIAAAGVAN---LVR-  194 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~--ga~V~v~~~~t----------------~~l~~~l~~ADIVIsa~g~p~---~i~-  194 (272)
                      +++.|||.|.+ |.+++..|.+.  +.+|++++++.                .++.+.++++|+||.+++...   ++. 
T Consensus         7 ~~I~iIG~G~m-G~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~   85 (290)
T 3b1f_A            7 KTIYIAGLGLI-GASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKKTIDFIKI   85 (290)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHHHHHHHHH
T ss_pred             ceEEEEeeCHH-HHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHHHHHHHHH
Confidence            68999999885 99999999987  57899998652                234566789999999998432   222 


Q ss_pred             -CCC-cCCCcEEEEeee
Q 024116          195 -GSW-LKPGAVVLDVGT  209 (272)
Q Consensus       195 -~~~-vk~g~vviDig~  209 (272)
                       ..+ ++++.+|+|++.
T Consensus        86 l~~~~l~~~~ivi~~~~  102 (290)
T 3b1f_A           86 LADLDLKEDVIITDAGS  102 (290)
T ss_dssp             HHTSCCCTTCEEECCCS
T ss_pred             HHhcCCCCCCEEEECCC
Confidence             235 778899999764

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=96.63  E-value=0.017  Score=53.32  Aligned_cols=147  Identities=14%  Similarity=0.155  Sum_probs=97.0

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEEcCCCCC---HHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCc
Q 024116           21 DSQTYVRNKIKACEEVGIKSIVTEFADGCT---EDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG   97 (272)
Q Consensus        21 ~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~---~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg   97 (272)
                      .|..=--+-..+++++|.++.+..- .+.+   .+-+.+.++-|+.-  +|+|.+--|-..  ....+-++.       .
T Consensus        80 pSTRTR~SFE~A~~~LGg~vi~l~~-~~ss~~kgEsl~DTarvLs~y--~D~IviR~~~~~--~~~~lA~~~-------~  147 (340)
T 4ep1_A           80 HSTRTRVSFEAGMVQLGGHGMFLNG-KEMQMGRGETVSDTAKVLSHY--IDGIMIRTFSHA--DVEELAKES-------S  147 (340)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEES-CC------CCTTHHHHHHHHH--CSEEEEECSCHH--HHHHHHHHC-------S
T ss_pred             CCccHHHHHHHHHHHcCCeEEEcCc-ccccCCCCCCHHHHHHHHHHh--CCEEEEecCChh--HHHHHHHhC-------C
Confidence            3444444567889999999987752 2211   22355555555553  688888766221  122222221       2


Q ss_pred             cccccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------
Q 024116           98 FHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------  170 (272)
Q Consensus        98 ~~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t------  170 (272)
                      +-.+|.|       .+.+.||=+.+ ++.+.++.| .++|++|+++|-++.|.+.++..+...|++|+++.-..      
T Consensus       148 vPVINag-------~~~~HPtQaLaDl~TI~E~~G-~l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~  219 (340)
T 4ep1_A          148 IPVINGL-------TDDHHPCQALADLMTIYEETN-TFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEE  219 (340)
T ss_dssp             SCEEEEE-------CSSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHH
T ss_pred             CCEEeCC-------CCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHH
Confidence            3455642       13467998888 555555554 69999999999988899999999999999999986331      


Q ss_pred             -------------------CCHhhhcCCCcEEEEec
Q 024116          171 -------------------KNPEQITSEADIVIAAA  187 (272)
Q Consensus       171 -------------------~~l~~~l~~ADIVIsa~  187 (272)
                                         .++.+.+++||+|.+-.
T Consensus       220 ~~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~  255 (340)
T 4ep1_A          220 IVKKALAIAKETGAEIEILHNPELAVNEADFIYTDV  255 (340)
T ss_dssp             HHHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEECC
T ss_pred             HHHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEecC
Confidence                               35678899999998654

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.62  E-value=0.00087  Score=58.96  Aligned_cols=35  Identities=11%  Similarity=0.274  Sum_probs=31.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~  169 (272)
                      +++++|+|+|.|++ |.+++..|+..|. ++++++++
T Consensus        29 l~~~~VlVvG~Gg~-G~~va~~La~~Gv~~i~lvD~d   64 (249)
T 1jw9_B           29 LKDSRVLIVGLGGL-GCAASQYLASAGVGNLTLLDFD   64 (249)
T ss_dssp             HHHCEEEEECCSHH-HHHHHHHHHHHTCSEEEEECCC
T ss_pred             HhCCeEEEEeeCHH-HHHHHHHHHHcCCCeEEEEcCC
Confidence            57899999999995 9999999999996 89999765

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=96.62  E-value=0.0016  Score=57.79  Aligned_cols=38  Identities=24%  Similarity=0.274  Sum_probs=35.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++|+||.++|-|++.=+|++++..|+++|++|.++.++
T Consensus         5 f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~   42 (255)
T 4g81_D            5 FDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIR   42 (255)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            48999999999998888999999999999999999876

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.61  E-value=0.0035  Score=57.02  Aligned_cols=95  Identities=13%  Similarity=0.089  Sum_probs=64.0

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------CHhh
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQ  175 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~--------------------~l~~  175 (272)
                      +||....++..+++.++ -.|++|+|+|+++.+|..+++++...|++|+++.++..                    ++.+
T Consensus       151 l~~~~~ta~~~l~~~~~-~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~  229 (347)
T 2hcy_A          151 ILCAGITVYKALKSANL-MAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVG  229 (347)
T ss_dssp             GGTHHHHHHHHHHTTTC-CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHH
T ss_pred             HhhhHHHHHHHHHhcCC-CCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHH
Confidence            34544445566655432 36999999999666799999999999999988875431                    2222


Q ss_pred             hcC-----CCcEEEEecCCCccc--cCCCcCCCcEEEEeeeCC
Q 024116          176 ITS-----EADIVIAAAGVANLV--RGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       176 ~l~-----~ADIVIsa~g~p~~i--~~~~vk~g~vviDig~~~  211 (272)
                      .++     ..|+||.++|.+..+  --+.++++-.++.+|...
T Consensus       230 ~~~~~~~~~~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~  272 (347)
T 2hcy_A          230 AVLKATDGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGMPA  272 (347)
T ss_dssp             HHHHHHTSCEEEEEECSSCHHHHHHHTTSEEEEEEEEECCCCT
T ss_pred             HHHHHhCCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEeCCC
Confidence            222     479999999875433  234667777788888643

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.60  E-value=0.0019  Score=58.29  Aligned_cols=95  Identities=13%  Similarity=0.061  Sum_probs=63.9

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhh--
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQ--  175 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------~~l~~--  175 (272)
                      |+.+..+...+.+..---.|++|+|.|+++.+|..+++++...|++|+++.++.                   .++.+  
T Consensus       122 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~  201 (325)
T 3jyn_A          122 MLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRV  201 (325)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHH
T ss_pred             hhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHH
Confidence            334444445554433334699999999655579999999999999998887542                   12222  


Q ss_pred             --hc--CCCcEEEEecCCCcc-ccCCCcCCCcEEEEeeeCC
Q 024116          176 --IT--SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       176 --~l--~~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~~~  211 (272)
                        .+  +..|+||.++|.+.+ ---+.++++-.++.+|...
T Consensus       202 ~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~g~~~  242 (325)
T 3jyn_A          202 LELTDGKKCPVVYDGVGQDTWLTSLDSVAPRGLVVSFGNAS  242 (325)
T ss_dssp             HHHTTTCCEEEEEESSCGGGHHHHHTTEEEEEEEEECCCTT
T ss_pred             HHHhCCCCceEEEECCChHHHHHHHHHhcCCCEEEEEecCC
Confidence              22  258999999997433 2335678888888888653

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.60  E-value=0.0018  Score=57.27  Aligned_cols=71  Identities=18%  Similarity=0.351  Sum_probs=52.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------------CHhhhcC---CCcEEEEec
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------------NPEQITS---EADIVIAAA  187 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~--------------------------~l~~~l~---~ADIVIsa~  187 (272)
                      .+|.|||.|.+ |.+++..|.+.|.+|++++|+..                          +..+...   ++|+||.++
T Consensus         4 m~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v   82 (316)
T 2ew2_A            4 MKIAIAGAGAM-GSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALT   82 (316)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECS
T ss_pred             CeEEEECcCHH-HHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEe
Confidence            47999999885 99999999999999999987531                          1112333   899999999


Q ss_pred             CCCcc---cc--CCCcCCCcEEEEee
Q 024116          188 GVANL---VR--GSWLKPGAVVLDVG  208 (272)
Q Consensus       188 g~p~~---i~--~~~vk~g~vviDig  208 (272)
                      +.+..   +.  ...++++.+|+++.
T Consensus        83 ~~~~~~~v~~~l~~~l~~~~~iv~~~  108 (316)
T 2ew2_A           83 KAQQLDAMFKAIQPMITEKTYVLCLL  108 (316)
T ss_dssp             CHHHHHHHHHHHGGGCCTTCEEEECC
T ss_pred             ccccHHHHHHHHHHhcCCCCEEEEec
Confidence            85321   11  23467788899884

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=96.59  E-value=0.0027  Score=60.54  Aligned_cols=79  Identities=22%  Similarity=0.271  Sum_probs=54.8

Q ss_pred             HhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------------------------CCHhhh
Q 024116          129 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------------------KNPEQI  176 (272)
Q Consensus       129 ~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------------------------~~l~~~  176 (272)
                      ..+....-.+|.|||.|. +|.++|..|++ |.+|++++++.                                .++.+.
T Consensus        29 ~~~r~~~~mkIaVIGlG~-mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea  106 (432)
T 3pid_A           29 QMGRGSEFMKITISGTGY-VGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDA  106 (432)
T ss_dssp             ------CCCEEEEECCSH-HHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHH
T ss_pred             ccccccCCCEEEEECcCH-HHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHH
Confidence            333444556999999987 59999999987 99999998652                                234567


Q ss_pred             cCCCcEEEEecCCCc----------ccc------CCCcCCCcEEEEeeeC
Q 024116          177 TSEADIVIAAAGVAN----------LVR------GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       177 l~~ADIVIsa~g~p~----------~i~------~~~vk~g~vviDig~~  210 (272)
                      +++||+||.+++.|.          .+.      .. +++|++|||...-
T Consensus       107 ~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv  155 (432)
T 3pid_A          107 YRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTI  155 (432)
T ss_dssp             HTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCC
T ss_pred             HhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCC
Confidence            889999999998651          110      12 6788888886544

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.58  E-value=0.0017  Score=58.77  Aligned_cols=95  Identities=15%  Similarity=0.088  Sum_probs=63.8

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------CHhhh
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQI  176 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~--------------------~l~~~  176 (272)
                      |+....++..|.+..---.|++|+|.|+++.+|..+++++...|++|+.+.++..                    ++.+.
T Consensus       131 ~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  210 (336)
T 4b7c_A          131 GMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAG  210 (336)
T ss_dssp             SHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHH
T ss_pred             ccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHH
Confidence            4444455666644433347999999999555799999999999999998876531                    11111


Q ss_pred             c-----CCCcEEEEecCCCcc-ccCCCcCCCcEEEEeeeCC
Q 024116          177 T-----SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       177 l-----~~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~~~  211 (272)
                      +     ...|+||.++|.+.+ ---+.++++-.++.+|...
T Consensus       211 ~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~iv~~G~~~  251 (336)
T 4b7c_A          211 LKRECPKGIDVFFDNVGGEILDTVLTRIAFKARIVLCGAIS  251 (336)
T ss_dssp             HHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCGG
T ss_pred             HHHhcCCCceEEEECCCcchHHHHHHHHhhCCEEEEEeecc
Confidence            1     237888888886432 1234677777788887654

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=96.58  E-value=0.0041  Score=56.42  Aligned_cols=70  Identities=19%  Similarity=0.213  Sum_probs=52.4

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------------CCHhhhcCCCcEEEEecCCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------------KNPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------------~~l~~~l~~ADIVIsa~g~p  190 (272)
                      .-++.|||.|.+ |.+++..|++.|.+|++++|+.                         .+..+ ++++|+||.++..+
T Consensus        14 ~~kI~iIG~G~m-G~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~~   91 (335)
T 1z82_A           14 EMRFFVLGAGSW-GTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPVQ   91 (335)
T ss_dssp             CCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCGG
T ss_pred             CCcEEEECcCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCHH
Confidence            457999999885 9999999999999999998752                         12334 67899999999853


Q ss_pred             cc--ccCCCcC-CCcEEEEee
Q 024116          191 NL--VRGSWLK-PGAVVLDVG  208 (272)
Q Consensus       191 ~~--i~~~~vk-~g~vviDig  208 (272)
                      .+  +-. .++ ++.+||++.
T Consensus        92 ~~~~v~~-~l~~~~~~vv~~~  111 (335)
T 1z82_A           92 YIREHLL-RLPVKPSMVLNLS  111 (335)
T ss_dssp             GHHHHHT-TCSSCCSEEEECC
T ss_pred             HHHHHHH-HhCcCCCEEEEEe
Confidence            32  111 122 678899986

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.58  E-value=0.0027  Score=55.79  Aligned_cols=40  Identities=33%  Similarity=0.207  Sum_probs=35.6

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ..+++||+++|.|+++-+|+.++..|+++|++|+++.++.
T Consensus         9 ~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~   48 (269)
T 3vtz_A            9 MEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDE   48 (269)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4578999999999988889999999999999999998764

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=96.56  E-value=0.0022  Score=56.40  Aligned_cols=57  Identities=26%  Similarity=0.277  Sum_probs=45.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH-----------------------hhhcCCCcEEEEecCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP-----------------------EQITSEADIVIAAAGV  189 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l-----------------------~~~l~~ADIVIsa~g~  189 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+...+                       .+....-|++|+..|.
T Consensus        25 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD~lvnnAg~  104 (266)
T 3uxy_A           25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADLHLPGDLREAAYADGLPGAVAAGLGRLDIVVNNAGV  104 (266)
T ss_dssp             -CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCCSEECCCCTTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHhhhccCcCCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            57999999999988889999999999999999998764211                       1122367999988884

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.56  E-value=0.0025  Score=53.39  Aligned_cols=52  Identities=21%  Similarity=0.192  Sum_probs=43.0

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------CHh----hhcCCCcEEEEecCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------NPE----QITSEADIVIAAAGV  189 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~---------------~l~----~~l~~ADIVIsa~g~  189 (272)
                      +|+|.|+++.+|+.++..|+++|.+|+++.|+..               ++.    +.+...|+||...|.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   72 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV   72 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence            6999999888899999999999999999988631               111    457789999988875

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.56  E-value=0.002  Score=59.63  Aligned_cols=72  Identities=8%  Similarity=0.073  Sum_probs=55.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------------------CCHhhhcCCCcEEEEec
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------KNPEQITSEADIVIAAA  187 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t----------------------------~~l~~~l~~ADIVIsa~  187 (272)
                      -.+|.|||+|.. |.+++..|++.|.+|++..|+.                            .++.+.+++||+||.++
T Consensus        29 ~mkI~VIGaG~m-G~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaV  107 (356)
T 3k96_A           29 KHPIAILGAGSW-GTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVV  107 (356)
T ss_dssp             CSCEEEECCSHH-HHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECC
T ss_pred             CCeEEEECccHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECC
Confidence            468999999885 9999999999999999998751                            24567788999999999


Q ss_pred             CCCc---ccc--CCCcCCCcEEEEee
Q 024116          188 GVAN---LVR--GSWLKPGAVVLDVG  208 (272)
Q Consensus       188 g~p~---~i~--~~~vk~g~vviDig  208 (272)
                      +...   .+.  ..+++++.+|+++.
T Consensus       108 p~~~~~~vl~~i~~~l~~~~ivvs~~  133 (356)
T 3k96_A          108 PSFAFHEVITRMKPLIDAKTRIAWGT  133 (356)
T ss_dssp             CHHHHHHHHHHHGGGCCTTCEEEECC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            7532   121  23567888888874

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=96.55  E-value=0.022  Score=52.98  Aligned_cols=147  Identities=12%  Similarity=0.080  Sum_probs=98.9

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCc
Q 024116           21 DSQTYVRNKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG   97 (272)
Q Consensus        21 ~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg   97 (272)
                      .|..=--+-..++.++|.++.+..-. +.   ..+-+.+.++-|+.-  +|+|.+--|  .   . ..+..+.  +-. +
T Consensus        77 ~STRTR~SFE~A~~~LGg~vi~l~~~-~ss~~kgEsl~DTarvLs~~--~D~IviR~~--~---~-~~~~~lA--~~s-~  144 (359)
T 2w37_A           77 SSTRTRSAFTTASIDLGAHPEYLGQN-DIQLGKKESTSDTAKVLGSM--FDGIEFRGF--K---Q-SDAEILA--RDS-G  144 (359)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECTT-TCCTTTSSCHHHHHHHHHHH--CSEEEEESS--C---H-HHHHHHH--HHS-S
T ss_pred             CCccHHHHHHHHHHHcCCeEEEeCCc-cccCCCCcCHHHHHHHHHHh--cCEEEEecC--C---h-HHHHHHH--HhC-C
Confidence            44444446678899999999888532 21   123456666666553  678888766  2   2 2222221  111 2


Q ss_pred             cccccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC------
Q 024116           98 FHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL------  169 (272)
Q Consensus        98 ~~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~g-~~vG~~la~~L~~~ga~V~v~~~~------  169 (272)
                      +-.+|.|       .+.+.||=+.+ ++.+.++.+ .++|.+++++|-+ ..|++.++..|...|++|+++.-.      
T Consensus       145 vPVINa~-------~~~~HPtQaLaDl~Ti~E~~g-~l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~  216 (359)
T 2w37_A          145 VPVWNGL-------TDEWHPTQMLADFMTVKENFG-KLQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPTE  216 (359)
T ss_dssp             SCEEEEE-------CSSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCCH
T ss_pred             CCEEcCC-------CCCCCccHHHHHHHHHHHHhC-CcCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCCH
Confidence            4556632       24567998888 555555554 7999999999997 567999999999999999998632      


Q ss_pred             -------------------CCCHhhhcCCCcEEEEec
Q 024116          170 -------------------TKNPEQITSEADIVIAAA  187 (272)
Q Consensus       170 -------------------t~~l~~~l~~ADIVIsa~  187 (272)
                                         +.++++.++.||+|.+-+
T Consensus       217 ~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~  253 (359)
T 2w37_A          217 ETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTDV  253 (359)
T ss_dssp             HHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             HHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEcc
Confidence                               245678899999999643

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=96.55  E-value=0.015  Score=53.40  Aligned_cols=147  Identities=14%  Similarity=0.135  Sum_probs=98.5

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCc
Q 024116           21 DSQTYVRNKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG   97 (272)
Q Consensus        21 ~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg   97 (272)
                      .|..=--+=..++.++|.++.+..- .+.   ..+-+.+.++-|+.-  +|+|.+--|-.      ..+..+.  +-. .
T Consensus        58 ~STRTR~SFE~A~~~LGg~~i~l~~-~~ss~~kgEsl~DTarvLs~~--~D~iviR~~~~------~~~~~lA--~~~-~  125 (323)
T 3gd5_A           58 ASTRTRVSFTVAMYQLGGQVIDLSP-SNTQVGRGEPVRDTARVLGRY--VDGLAIRTFAQ------TELEEYA--HYA-G  125 (323)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEC-----------CCHHHHHHHHTTT--CSEEEEECSSH------HHHHHHH--HHH-C
T ss_pred             CCcchHhhHHHHHHHcCCeEEEeCc-ccccCCCCCCHHHHHHHHHHh--CCEEEEecCCh------hHHHHHH--HhC-C
Confidence            3444444566889999999987642 111   134477778878774  78999877632      2222221  111 2


Q ss_pred             cccccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------
Q 024116           98 FHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------  170 (272)
Q Consensus        98 ~~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t------  170 (272)
                      +-.+|.|.       +.+.||=+.+ ++.+.++.| .++|++|+++|-++.|.+.++..+...|++|+++.-..      
T Consensus       126 vPVINag~-------~~~HPtQaLaDl~Ti~e~~g-~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~  197 (323)
T 3gd5_A          126 IPVINALT-------DHEHPCQVVADLLTIRENFG-RLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPA  197 (323)
T ss_dssp             SCEEEEEC-------SSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHH
T ss_pred             CCEEeCCC-------CCCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHH
Confidence            34456532       3467998888 555555554 79999999999988899999999999999999986331      


Q ss_pred             -------------------CCHhhhcCCCcEEEEec
Q 024116          171 -------------------KNPEQITSEADIVIAAA  187 (272)
Q Consensus       171 -------------------~~l~~~l~~ADIVIsa~  187 (272)
                                         .++.+.+++||+|++-.
T Consensus       198 ~~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~  233 (323)
T 3gd5_A          198 VSARASEIAGRTGAEVQILRDPFEAARGAHILYTDV  233 (323)
T ss_dssp             HHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             HHHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEec
Confidence                               35678899999998654

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=96.55  E-value=0.0026  Score=54.46  Aligned_cols=70  Identities=20%  Similarity=0.197  Sum_probs=51.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEE-EeCCCC---------------CHhhhcCCCcEEEEecCCCc---c---c
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSI-VHALTK---------------NPEQITSEADIVIAAAGVAN---L---V  193 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v-~~~~t~---------------~l~~~l~~ADIVIsa~g~p~---~---i  193 (272)
                      -+++.|||.|.+ |.+++..|.+.|.+|++ ++|+.+               +..+.++++|+||.+++...   .   +
T Consensus        23 mmkI~IIG~G~m-G~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~l  101 (220)
T 4huj_A           23 MTTYAIIGAGAI-GSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPYDSIADIVTQV  101 (220)
T ss_dssp             SCCEEEEECHHH-HHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCGGGHHHHHTTC
T ss_pred             CCEEEEECCCHH-HHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCChHHHHHHHHHh
Confidence            368999999885 99999999999999998 766532               22345788999999997322   1   2


Q ss_pred             cCCCcCCCcEEEEeee
Q 024116          194 RGSWLKPGAVVLDVGT  209 (272)
Q Consensus       194 ~~~~vk~g~vviDig~  209 (272)
                      .+  + ++.+|+|+.-
T Consensus       102 ~~--~-~~~ivi~~~~  114 (220)
T 4huj_A          102 SD--W-GGQIVVDASN  114 (220)
T ss_dssp             SC--C-TTCEEEECCC
T ss_pred             hc--c-CCCEEEEcCC
Confidence            22  3 5789999873

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.55  E-value=0.0029  Score=55.98  Aligned_cols=54  Identities=15%  Similarity=0.129  Sum_probs=45.2

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------CHhhhcCCCcEEEEecCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------NPEQITSEADIVIAAAGV  189 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-----------------~l~~~l~~ADIVIsa~g~  189 (272)
                      +++|+|.|++|.+|+.++..|+++|.+|+++.|...                 .+.+.++.+|+||...+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~   72 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYTLEDLINQLNDVDAVVHLAAT   72 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCCHHHHHHHTTTCSEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEccccHHHHHHhhcCCCEEEEcccc
Confidence            479999999999999999999999999999988632                 144577889999987764

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.55  E-value=0.0036  Score=59.80  Aligned_cols=72  Identities=22%  Similarity=0.238  Sum_probs=55.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------------------------CCHhhhcCCCcE
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------------KNPEQITSEADI  182 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t----------------------------------~~l~~~l~~ADI  182 (272)
                      -++.|||.|- +|.|+|..|++.|.+|++++++.                                  .++.+.+++||+
T Consensus         9 ~~~~vIGlG~-vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDv   87 (446)
T 4a7p_A            9 VRIAMIGTGY-VGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADA   87 (446)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSE
T ss_pred             eEEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCE
Confidence            4799999987 59999999999999999998653                                  133467789999


Q ss_pred             EEEecCCCc----------ccc------CCCcCCCcEEEEeee
Q 024116          183 VIAAAGVAN----------LVR------GSWLKPGAVVLDVGT  209 (272)
Q Consensus       183 VIsa~g~p~----------~i~------~~~vk~g~vviDig~  209 (272)
                      ||.++|.|.          .+.      ...++++.+||+...
T Consensus        88 vii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~ST  130 (446)
T 4a7p_A           88 VFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKST  130 (446)
T ss_dssp             EEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSC
T ss_pred             EEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            999988763          121      124678888888654

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=96.54  E-value=0.0043  Score=56.17  Aligned_cols=38  Identities=18%  Similarity=0.342  Sum_probs=34.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHh--CCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQR--HHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~--~ga~V~v~~~~  169 (272)
                      .++++++|+|.|++|.+|+.++..|++  .|++|+++.|.
T Consensus         6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~   45 (362)
T 3sxp_A            6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKF   45 (362)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred             hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECC
Confidence            357899999999999999999999999  89999999763

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=96.54  E-value=0.012  Score=54.01  Aligned_cols=146  Identities=14%  Similarity=0.106  Sum_probs=99.6

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCc
Q 024116           21 DSQTYVRNKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG   97 (272)
Q Consensus        21 ~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg   97 (272)
                      .|..=--+-..++.++|.++.+..- .+.   ..|-+.+.++-|+.-  +|+|.+--|-.      ..+..+.  +-. +
T Consensus        68 pSTRTR~SFE~A~~~LGg~~i~l~~-~~ss~~kgEsl~DTarvLs~~--~D~iviR~~~~------~~~~~lA--~~~-~  135 (325)
T 1vlv_A           68 RSTRTRLAFETAFAEEGGHPIFLSP-NDIHLGAKESLEDTARVLGRM--VDAIMFRGYKQ------ETVEKLA--EYS-G  135 (325)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECT-TTCCTTTSSCHHHHHHHHHTT--CSEEEEESSCH------HHHHHHH--HHH-C
T ss_pred             CCcchHHHHHHHHHHcCCeEEEECC-ccccCCCCcCHHHHHHHHHHh--CCEEEEECCCh------HHHHHHH--HhC-C
Confidence            4444444667889999999988863 222   123477777777764  68999876622      2222221  111 2


Q ss_pred             cccccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC------
Q 024116           98 FHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL------  169 (272)
Q Consensus        98 ~~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~g-~~vG~~la~~L~~~ga~V~v~~~~------  169 (272)
                      +-.+|.     +  .+.+.||=+.+ ++.+.++. ..++|++++++|-+ ..|.+.++..|...|++|+++.-.      
T Consensus       136 vPVINa-----~--~~~~HPtQaLaDl~Ti~e~~-g~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~  207 (325)
T 1vlv_A          136 VPVYNG-----L--TDEFHPTQALADLMTIEENF-GRLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRS  207 (325)
T ss_dssp             SCEEES-----C--CSSCCHHHHHHHHHHHHHHH-SCSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCH
T ss_pred             CCEEeC-----C--CCCCCcHHHHHHHHHHHHHh-CCcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCH
Confidence            344553     1  23577998888 55555555 47999999999996 567999999999999999998632      


Q ss_pred             -------------------CCCHhhhcCCCcEEEEe
Q 024116          170 -------------------TKNPEQITSEADIVIAA  186 (272)
Q Consensus       170 -------------------t~~l~~~l~~ADIVIsa  186 (272)
                                         +.++++.+++||+|.+-
T Consensus       208 ~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~  243 (325)
T 1vlv_A          208 DVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTD  243 (325)
T ss_dssp             HHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEec
Confidence                               24567889999999863

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=96.54  E-value=0.024  Score=52.58  Aligned_cols=149  Identities=13%  Similarity=0.133  Sum_probs=99.2

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEEcCCC-C-CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCcc
Q 024116           21 DSQTYVRNKIKACEEVGIKSIVTEFADG-C-TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF   98 (272)
Q Consensus        21 ~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~-~-~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~   98 (272)
                      .|..=--+-..++.++|.++.++..... . ..|-+.+.++-|..-  +|+|.+--|  .+-....+-++.       .+
T Consensus        76 ~STRTR~SFE~A~~~LGg~~i~l~~~~s~l~kgEsl~DTarvLs~~--~D~IviR~~--~~~~~~~lA~~s-------~v  144 (353)
T 3sds_A           76 RSTRTRVSTEGAVVKMGGHPMFLGKDDIQLGVNESLYDTSVVISSM--VSCIVARVG--PHSDIANLAKHS-------SV  144 (353)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECTTTC--CCSSCHHHHHHHHHTS--CSEEEEECS--SHHHHHHHHHHC-------SS
T ss_pred             CchhHHHHHHHHHHHcCCeEEecCCccccccCCccHHHHHHHHHHh--cCEEEEEeC--ChHHHHHHHhhC-------CC
Confidence            3444344567889999999987643211 0 124577777777764  789988755  211222222221       23


Q ss_pred             ccccccccccCCCCCccccCCHHH-HHHHHHHhCC------------CCccceEEEEcCCcccHHHHHHHHHhCCCEEEE
Q 024116           99 HPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGV------------EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSI  165 (272)
Q Consensus        99 ~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~------------~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v  165 (272)
                      -.+|.|       .+.+.||=+.+ ++.+.++.|-            .++|++|+++|-+..|.+.++..|...|++|++
T Consensus       145 PVINag-------~d~~HPtQaLaDl~TI~E~~G~~~~~~~~~~~~~~l~glkva~vGD~~nva~Sl~~~l~~lG~~v~~  217 (353)
T 3sds_A          145 PVINAL-------CDTFHPLQAIADFLTIHESFASQSATHGTHPSSLGLEGLKIAWVGDANNVLFDLAIAATKMGVNVAV  217 (353)
T ss_dssp             CEEEEE-------CSSCCHHHHHHHHHHHHHHTC--------CTTCCSCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEECC-------CCCCCcHHHHHHHHHHHHHhCCCcccccccccccccCCCEEEEECCCchHHHHHHHHHHHcCCEEEE
Confidence            455653       13467998888 5566666553            149999999999999999999999999999999


Q ss_pred             EeCCC---------------------------CCHhhhcCCCcEEEEec
Q 024116          166 VHALT---------------------------KNPEQITSEADIVIAAA  187 (272)
Q Consensus       166 ~~~~t---------------------------~~l~~~l~~ADIVIsa~  187 (272)
                      +.-..                           .++++.+++||+|++-+
T Consensus       218 ~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVvytd~  266 (353)
T 3sds_A          218 ATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIVTDT  266 (353)
T ss_dssp             ECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEEEECC
T ss_pred             ECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEEEeCC
Confidence            85321                           35678899999999754

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.54  E-value=0.0041  Score=56.30  Aligned_cols=70  Identities=16%  Similarity=0.189  Sum_probs=52.6

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-----------------------------CCHhhhcCCCcEEEEec
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------------------------KNPEQITSEADIVIAAA  187 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-----------------------------~~l~~~l~~ADIVIsa~  187 (272)
                      +++.|||.|.+ |..++..|.+.|.+|++++|+.                             .++.+.++++|+||.++
T Consensus         5 mki~iiG~G~~-G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v   83 (359)
T 1bg6_A            5 KTYAVLGLGNG-GHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   83 (359)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CeEEEECCCHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeC
Confidence            58999999875 9999999999999999997742                             13345577899999999


Q ss_pred             CCCcc---cc--CCCcCCCcEEEEe
Q 024116          188 GVANL---VR--GSWLKPGAVVLDV  207 (272)
Q Consensus       188 g~p~~---i~--~~~vk~g~vviDi  207 (272)
                      +.+..   +.  ...++++++|+++
T Consensus        84 ~~~~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           84 PAIHHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             CGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             CchHHHHHHHHHHHhCCCCCEEEEc
Confidence            86432   21  2346677777776

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=96.54  E-value=0.0025  Score=55.44  Aligned_cols=37  Identities=27%  Similarity=0.325  Sum_probs=34.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   41 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADID   41 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999998889999999999999999999875

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A

Probab=96.53  E-value=0.0019  Score=63.00  Aligned_cols=93  Identities=15%  Similarity=0.247  Sum_probs=75.6

Q ss_pred             CCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHh----CCC-------EEEEEeCC-----------------
Q 024116          118 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR----HHA-------TVSIVHAL-----------------  169 (272)
Q Consensus       118 ~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~----~ga-------~V~v~~~~-----------------  169 (272)
                      .|..|++..|+-.+.+++.-++++.|+|.+ |-+++.+|..    .|.       .+++|+++                 
T Consensus       264 V~lAgllnAlki~gk~l~d~riv~~GAGaA-g~gia~ll~~~~~~~G~~~eeA~~~i~~~D~~Gli~~~r~~l~~~k~~~  342 (555)
T 1gq2_A          264 VAVAGLLAALRITKNRLSDHTVLFQGAGEA-ALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHF  342 (555)
T ss_dssp             HHHHHHHHHHHHHTSCGGGCCEEEECCSHH-HHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGGG
T ss_pred             HHHHHHHHHHHHhCCChhhcEEEEECCCHH-HHHHHHHHHHHHHHcCCChHHHhCcEEEEECCCeeeCCCCCchHHHHHH
Confidence            345778999999999999999999999998 9999999887    673       69999864                 


Q ss_pred             ------CCCHhhhcCC--CcEEEEecCCCccccCCCcC------CCcEEEEeeeCCC
Q 024116          170 ------TKNPEQITSE--ADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  212 (272)
Q Consensus       170 ------t~~l~~~l~~--ADIVIsa~g~p~~i~~~~vk------~g~vviDig~~~~  212 (272)
                            ..+|.+.++.  +|++|-..+.|+.++++|++      +.-+|+=++ ||.
T Consensus       343 A~~~~~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  398 (555)
T 1gq2_A          343 AHEHCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALS-NPT  398 (555)
T ss_dssp             CBSCCCCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             HhhcCCCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC-CCC
Confidence                  1257788884  99999888888999999875      566777776 553

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.53  E-value=0.0032  Score=55.07  Aligned_cols=70  Identities=14%  Similarity=0.125  Sum_probs=52.5

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH---------------------hhhcCCCcEEEEecCCCcc---c
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP---------------------EQITSEADIVIAAAGVANL---V  193 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l---------------------~~~l~~ADIVIsa~g~p~~---i  193 (272)
                      ++.|||.|.+ |.+++..|.+.|.+|++++|+...+                     .+.++++|+||.+++.+.+   +
T Consensus         2 ~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~~~~~v~   80 (291)
T 1ks9_A            2 KITVLGCGAL-GQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAV   80 (291)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGHHHHH
T ss_pred             eEEEECcCHH-HHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHHhHHHHH
Confidence            7999999875 9999999999999999998764211                     2345689999999986542   1


Q ss_pred             c--CCCcCCCcEEEEee
Q 024116          194 R--GSWLKPGAVVLDVG  208 (272)
Q Consensus       194 ~--~~~vk~g~vviDig  208 (272)
                      .  ...++++.+|+++.
T Consensus        81 ~~l~~~l~~~~~vv~~~   97 (291)
T 1ks9_A           81 KSLASTLPVTTPILLIH   97 (291)
T ss_dssp             HHHHTTSCTTSCEEEEC
T ss_pred             HHHHhhCCCCCEEEEec
Confidence            1  23457788888874

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=96.53  E-value=0.003  Score=55.28  Aligned_cols=57  Identities=14%  Similarity=0.183  Sum_probs=45.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------C------Hhhhc-------CCCcEEEEecCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------N------PEQIT-------SEADIVIAAAGV  189 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~----------~------l~~~l-------~~ADIVIsa~g~  189 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+..          |      +++.+       ...|+||+..|.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~   84 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAGI   84 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCCSCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCcccCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            478999999999988999999999999999999887531          1      12222       268999988874

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.53  E-value=0.0013  Score=59.45  Aligned_cols=89  Identities=17%  Similarity=0.178  Sum_probs=60.2

Q ss_pred             HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhh----hc--
Q 024116          123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQ----IT--  177 (272)
Q Consensus       123 ~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------~~l~~----~l--  177 (272)
                      ++..+.+..---.|++|+|+|+++.+|..+++++...|++|+++.++.                   .++.+    ..  
T Consensus       136 a~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~  215 (334)
T 3qwb_A          136 ALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNG  215 (334)
T ss_dssp             HHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTT
T ss_pred             HHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCC
Confidence            334444332334799999999655579999999999999998887642                   12222    22  


Q ss_pred             CCCcEEEEecCCCcc-ccCCCcCCCcEEEEeeeCC
Q 024116          178 SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       178 ~~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~~~  211 (272)
                      +..|+||.++|.+.+ ---++++++-.++.+|...
T Consensus       216 ~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~  250 (334)
T 3qwb_A          216 KGVDASFDSVGKDTFEISLAALKRKGVFVSFGNAS  250 (334)
T ss_dssp             SCEEEEEECCGGGGHHHHHHHEEEEEEEEECCCTT
T ss_pred             CCceEEEECCChHHHHHHHHHhccCCEEEEEcCCC
Confidence            247999999987432 1234678877888888653

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=96.52  E-value=0.0027  Score=55.22  Aligned_cols=38  Identities=29%  Similarity=0.411  Sum_probs=34.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   45 (263)
T 3ak4_A            8 FDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLD   45 (263)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999889999999999999999998775

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.52  E-value=0.0034  Score=50.30  Aligned_cols=55  Identities=16%  Similarity=0.224  Sum_probs=43.1

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------------CHhh-hcCCCcEEEEecC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------------NPEQ-ITSEADIVIAAAG  188 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------------------~l~~-~l~~ADIVIsa~g  188 (272)
                      ..++++|+|+|. +|+.++..|.+.|..|+++.++.+                         .+.+ .+.+||.||.+++
T Consensus         2 ~~~~vlI~G~G~-vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~   80 (153)
T 1id1_A            2 RKDHFIVCGHSI-LAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSD   80 (153)
T ss_dssp             CCSCEEEECCSH-HHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred             CCCcEEEECCCH-HHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecC
Confidence            457899999977 599999999999999999987520                         0122 3788999999988


Q ss_pred             CC
Q 024116          189 VA  190 (272)
Q Consensus       189 ~p  190 (272)
                      ..
T Consensus        81 ~d   82 (153)
T 1id1_A           81 ND   82 (153)
T ss_dssp             CH
T ss_pred             Ch
Confidence            54

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=96.52  E-value=0.0027  Score=57.41  Aligned_cols=69  Identities=19%  Similarity=0.187  Sum_probs=50.9

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------CHhhhcCCCcEEEEecCCCccc
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAGVANLV  193 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~---------------------~l~~~l~~ADIVIsa~g~p~~i  193 (272)
                      .-|+|.|||.|-+ |.++|..|+ .|.+|++.+++..                     ++.+ +++||+||.+++-..-+
T Consensus        11 ~~~~V~vIG~G~M-G~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~v   87 (293)
T 1zej_A           11 HHMKVFVIGAGLM-GRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNT   87 (293)
T ss_dssp             -CCEEEEECCSHH-HHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHH
T ss_pred             CCCeEEEEeeCHH-HHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHH
Confidence            5699999999886 999999999 9999999987631                     2333 78999999999854311


Q ss_pred             cC------CCcCCCcEEE-Ee
Q 024116          194 RG------SWLKPGAVVL-DV  207 (272)
Q Consensus       194 ~~------~~vk~g~vvi-Di  207 (272)
                      +.      +-+ ++++++ |.
T Consensus        88 k~~l~~~l~~~-~~~Ilasnt  107 (293)
T 1zej_A           88 KVEVLREVERL-TNAPLCSNT  107 (293)
T ss_dssp             HHHHHHHHHTT-CCSCEEECC
T ss_pred             HHHHHHHHhcC-CCCEEEEEC
Confidence            11      223 787775 44

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=96.51  E-value=0.0066  Score=55.82  Aligned_cols=77  Identities=19%  Similarity=0.160  Sum_probs=52.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------------CCHhhhc---CCCcEEEEecCCC-c
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------------KNPEQIT---SEADIVIAAAGVA-N  191 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t------------------~~l~~~l---~~ADIVIsa~g~p-~  191 (272)
                      -.|++|+|.|+++.+|..+++++...|++|+.+.+..                  .++.+.+   ..+|+||.++|.+ .
T Consensus       182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g~~~~  261 (375)
T 2vn8_A          182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTE  261 (375)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEEESSCTTHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeChHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEEECCCChhh
Confidence            4799999999655679999999999999987765321                  1222222   3478888888876 2


Q ss_pred             cc--cCCCcCCCcEEEEeeeC
Q 024116          192 LV--RGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       192 ~i--~~~~vk~g~vviDig~~  210 (272)
                      .+  .-+.++++-.++.+|..
T Consensus       262 ~~~~~~~~l~~~G~iv~~g~~  282 (375)
T 2vn8_A          262 TWAPDFLKKWSGATYVTLVTP  282 (375)
T ss_dssp             HHGGGGBCSSSCCEEEESCCS
T ss_pred             hhHHHHHhhcCCcEEEEeCCC
Confidence            22  22456777677777743

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*

Probab=96.51  E-value=0.002  Score=63.29  Aligned_cols=93  Identities=8%  Similarity=0.114  Sum_probs=75.6

Q ss_pred             CCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHh----CCC-------EEEEEeCC-----------------
Q 024116          118 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR----HHA-------TVSIVHAL-----------------  169 (272)
Q Consensus       118 ~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~----~ga-------~V~v~~~~-----------------  169 (272)
                      .|..|++..|+-.+.+++.-++++.|+|.+ |-+++.+|..    .|.       .+++|+++                 
T Consensus       302 V~lAgllnAlki~gk~l~d~riv~~GAGaA-gigia~ll~~~m~~~Gl~~eeA~~~i~~vD~~Gli~~~r~~l~~~k~~~  380 (605)
T 1o0s_A          302 VIVAGLLTCTRVTKKLVSQEKYLFFGAGAA-STGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQF  380 (605)
T ss_dssp             HHHHHHHHHHHHHCCCGGGCCEEEECCSHH-HHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTT
T ss_pred             HHHHHHHHHHHHhCCChhhcEEEEECCCHH-HHHHHHHHHHHHHHcCCChhhhhCeEEEEECCCceeCCCCCchHHHHHH
Confidence            345778999999999999999999999998 9999999887    784       58999864                 


Q ss_pred             ------CCCHhhhcCC--CcEEEEecCCCccccCCCcC------CCcEEEEeeeCCC
Q 024116          170 ------TKNPEQITSE--ADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  212 (272)
Q Consensus       170 ------t~~l~~~l~~--ADIVIsa~g~p~~i~~~~vk------~g~vviDig~~~~  212 (272)
                            ..+|.+.++.  +|++|-..+.|+.++++|++      +.-+|+=++ ||.
T Consensus       381 A~~~~~~~~L~eav~~vkpdVlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  436 (605)
T 1o0s_A          381 AKDMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALS-NPT  436 (605)
T ss_dssp             CBSSCCCCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             HhhcCCCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC-CCC
Confidence                  1257788884  99999888888999999875      466777776 443

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=96.50  E-value=0.041  Score=51.06  Aligned_cols=140  Identities=9%  Similarity=0.066  Sum_probs=95.8

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCcccccccc
Q 024116           28 NKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIG  104 (272)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~~~~n~g  104 (272)
                      +=..++.++|.++.+..- .+.   ..+-+.+.++-|+.-  +|+|.+--|-.      ..+..+.  +-. ++-.+|.|
T Consensus        58 SFE~A~~~LGg~vi~l~~-~~ssl~kgEsl~DTarvLs~y--~D~IviR~~~~------~~~~~lA--~~~-~vPVINag  125 (355)
T 4a8p_A           58 SFETAMEQLGGHGEYLAP-GQIQLGGHETIEDTSRVLSRL--VDILMARVERH------HSIVDLA--NCA-TIPVINGM  125 (355)
T ss_dssp             HHHHHHHHTTCEEEEECB-TTBCBTTTBCHHHHHHHHTTT--CSEEEEECSSH------HHHHHHH--HHC-SSCEEECC
T ss_pred             hHHHHHHHcCCeEEEeCc-ccccCCCCcCHHHHHHHHHHh--CCEEEEecCcH------HHHHHHH--HhC-CCCEEeCC
Confidence            556789999999997642 221   134577788877774  78998876622      2222221  111 23445642


Q ss_pred             ccccCCCCCccccCCHHH-HHHHHHHh--CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-----------
Q 024116          105 NLAMRGREPLFIPCTPKG-CIELLIRS--GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------  170 (272)
Q Consensus       105 ~l~~~~~~~~~~p~Ta~g-~~~~l~~~--~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-----------  170 (272)
                             .+.+.||=+.+ ++.+.++.  |.+++|++|+++|-++.|.+.++..+...|++|+++.-..           
T Consensus       126 -------~~~~HPtQaLaDl~TI~E~~~~G~~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~  198 (355)
T 4a8p_A          126 -------SDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKL  198 (355)
T ss_dssp             -------CSSCCHHHHHHHHHHHHHTCCTTCCGGGCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHH
T ss_pred             -------CCCCCcHHHHHHHHHHHHHhhcCCCCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHH
Confidence                   24567998888 44444444  3379999999999988899999999999999999986432           


Q ss_pred             --------------CCHhhhcCCCcEEEEec
Q 024116          171 --------------KNPEQITSEADIVIAAA  187 (272)
Q Consensus       171 --------------~~l~~~l~~ADIVIsa~  187 (272)
                                    .++. .+++||+|.+-+
T Consensus       199 ~~~a~~~G~~v~~~~d~~-av~~aDVVytd~  228 (355)
T 4a8p_A          199 AKNCEVSGGSFLVTDDAS-SVEGADFLYTDV  228 (355)
T ss_dssp             HHHHHHHSCEEEEECCGG-GGTTCSEEEECC
T ss_pred             HHHHHHcCCeEEEECCHH-HHcCCCEEEecc
Confidence                          3456 789999999743

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.47  E-value=0.0098  Score=57.33  Aligned_cols=75  Identities=25%  Similarity=0.229  Sum_probs=55.6

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhC-CC-EEEEEeCCCC----C---H--------------------------------h
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRH-HA-TVSIVHALTK----N---P--------------------------------E  174 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~-ga-~V~v~~~~t~----~---l--------------------------------~  174 (272)
                      -++|.|||.|-+ |.++|..|++. |. +|++++++..    .   +                                .
T Consensus        18 ~mkIaVIGlG~m-G~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd~   96 (478)
T 3g79_A           18 IKKIGVLGMGYV-GIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPDF   96 (478)
T ss_dssp             CCEEEEECCSTT-HHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESCG
T ss_pred             CCEEEEECcCHH-HHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCcH
Confidence            368999999885 99999999999 99 9999987654    1   0                                2


Q ss_pred             hhcCCCcEEEEecCCCcccc----C-------------CCcCCCcEEEEeeeCC
Q 024116          175 QITSEADIVIAAAGVANLVR----G-------------SWLKPGAVVLDVGTCP  211 (272)
Q Consensus       175 ~~l~~ADIVIsa~g~p~~i~----~-------------~~vk~g~vviDig~~~  211 (272)
                      +.+++||+||.+++.|.-.+    +             ..+++|.+|||...-+
T Consensus        97 ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~  150 (478)
T 3g79_A           97 SRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTIT  150 (478)
T ss_dssp             GGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCC
T ss_pred             HHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCC
Confidence            34678999999998763111    1             1357888888875443

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.47  E-value=0.0038  Score=57.20  Aligned_cols=55  Identities=24%  Similarity=0.299  Sum_probs=44.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHhhhcCCCcEEEEecC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAG  188 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t--------------------------~~l~~~l~~ADIVIsa~g  188 (272)
                      ..||+|||+|. +|.+++..|+..|. +|++.+++.                          .++++.+++||+||.++|
T Consensus         9 ~~kI~VIGaG~-vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g   87 (331)
T 1pzg_A            9 RKKVAMIGSGM-IGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   87 (331)
T ss_dssp             CCEEEEECCSH-HHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CCEEEEECCCH-HHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccC
Confidence            35899999966 59999999999886 888887542                          355668899999999998


Q ss_pred             CCc
Q 024116          189 VAN  191 (272)
Q Consensus       189 ~p~  191 (272)
                      .|.
T Consensus        88 ~p~   90 (331)
T 1pzg_A           88 LTK   90 (331)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            664

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.47  E-value=0.003  Score=54.38  Aligned_cols=38  Identities=21%  Similarity=0.246  Sum_probs=34.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~   42 (253)
T 3qiv_A            5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADIN   42 (253)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC
Confidence            46789999999998888999999999999999999876

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=96.46  E-value=0.0027  Score=55.63  Aligned_cols=39  Identities=26%  Similarity=0.293  Sum_probs=32.8

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus        23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   61 (260)
T 3gem_A           23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTE   61 (260)
T ss_dssp             ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            457899999999988889999999999999999998875

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=96.46  E-value=0.0033  Score=54.39  Aligned_cols=37  Identities=27%  Similarity=0.321  Sum_probs=34.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~   39 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDIN   39 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999998888999999999999999999875

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.45  E-value=0.0044  Score=56.20  Aligned_cols=93  Identities=14%  Similarity=0.134  Sum_probs=64.8

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhh
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQI  176 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------~~l~~~  176 (272)
                      +||....++..++..++ -.|++|+|+|+|+ +|..+++++...|++|+.+.++.                   .++.+.
T Consensus       146 l~~~~~ta~~~l~~~~~-~~g~~VlV~GaG~-vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~  223 (339)
T 1rjw_A          146 IFCAGVTTYKALKVTGA-KPGEWVAIYGIGG-LGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKF  223 (339)
T ss_dssp             GGTHHHHHHHHHHHHTC-CTTCEEEEECCST-THHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHH
T ss_pred             hhhhHHHHHHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHH
Confidence            45554555666666543 3689999999977 69999999999999998887542                   122222


Q ss_pred             ----cCCCcEEEEecCCCcccc--CCCcCCCcEEEEeeeC
Q 024116          177 ----TSEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       177 ----l~~ADIVIsa~g~p~~i~--~~~vk~g~vviDig~~  210 (272)
                          ...+|+||.++|.+..+.  -+.++++-.++.+|..
T Consensus       224 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          224 MKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLP  263 (339)
T ss_dssp             HHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCC
T ss_pred             HHHHhCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEeccc
Confidence                246899999999754332  2356777777888754

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=96.44  E-value=0.0034  Score=54.56  Aligned_cols=65  Identities=20%  Similarity=0.263  Sum_probs=48.3

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCCC---------------CHhhhcCCCcEEEEecCCCcc----ccCCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK---------------NPEQITSEADIVIAAAGVANL----VRGSW  197 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t~---------------~l~~~l~~ADIVIsa~g~p~~----i~~~~  197 (272)
                      ++.|||.|.+ |.+++..|.+.| ..|++++|+..               ++.+.+ ++|+||.+++ |..    +. +.
T Consensus         2 ~i~iiG~G~m-G~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~~-~l   77 (263)
T 1yqg_A            2 NVYFLGGGNM-AAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAACK-NI   77 (263)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHHT-TC
T ss_pred             EEEEECchHH-HHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHHH-Hh
Confidence            6899999885 999999999999 89999988631               233456 8999999998 431    11 11


Q ss_pred             c-CCCcEEEEe
Q 024116          198 L-KPGAVVLDV  207 (272)
Q Consensus       198 v-k~g~vviDi  207 (272)
                      . + +.+|+|+
T Consensus        78 ~~~-~~ivv~~   87 (263)
T 1yqg_A           78 RTN-GALVLSV   87 (263)
T ss_dssp             CCT-TCEEEEC
T ss_pred             ccC-CCEEEEe
Confidence            0 3 7788887

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=96.44  E-value=0.0034  Score=60.32  Aligned_cols=71  Identities=11%  Similarity=0.122  Sum_probs=54.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------------------------CHhhhcCCCc
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------------------NPEQITSEAD  181 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-----------------------------------~l~~~l~~AD  181 (272)
                      ++|.|||+|-+ |.++|..|++.|.+|++++++..                                   ++ +.+++||
T Consensus        55 ~kVaVIGaG~M-G~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl-~al~~aD  132 (460)
T 3k6j_A           55 NSVAIIGGGTM-GKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDF-HKLSNCD  132 (460)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCG-GGCTTCS
T ss_pred             CEEEEECCCHH-HHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCH-HHHccCC
Confidence            78999999885 99999999999999999987521                                   22 3578999


Q ss_pred             EEEEecCCCc-----ccc--CCCcCCCcEEEEeee
Q 024116          182 IVIAAAGVAN-----LVR--GSWLKPGAVVLDVGT  209 (272)
Q Consensus       182 IVIsa~g~p~-----~i~--~~~vk~g~vviDig~  209 (272)
                      +||.|++...     ++.  .+.+++++++++...
T Consensus       133 lVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTS  167 (460)
T 3k6j_A          133 LIVESVIEDMKLKKELFANLENICKSTCIFGTNTS  167 (460)
T ss_dssp             EEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCS
T ss_pred             EEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCC
Confidence            9999998431     121  235688888877544

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=96.43  E-value=0.0033  Score=57.21  Aligned_cols=94  Identities=17%  Similarity=0.158  Sum_probs=64.7

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhC-CCEEEEEeCCC-------------------CC---
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALT-------------------KN---  172 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~-ga~V~v~~~~t-------------------~~---  172 (272)
                      +||....++..+++.++ -.|++|+|.|+|+.+|..+++++... |++|+++.++.                   .+   
T Consensus       152 l~~~~~ta~~~l~~~~~-~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  230 (347)
T 1jvb_A          152 LTCSGITTYRAVRKASL-DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLA  230 (347)
T ss_dssp             GGTHHHHHHHHHHHTTC-CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHH
T ss_pred             chhhHHHHHHHHHhcCC-CCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHH
Confidence            35544445666665332 37999999999966799999999999 99998887542                   11   


Q ss_pred             -Hhhhc--CCCcEEEEecCCCccc--cCCCcCCCcEEEEeeeC
Q 024116          173 -PEQIT--SEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       173 -l~~~l--~~ADIVIsa~g~p~~i--~~~~vk~g~vviDig~~  210 (272)
                       +.+..  ...|+||.++|.+..+  --+.++++-.++.+|..
T Consensus       231 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~  273 (347)
T 1jvb_A          231 EIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLF  273 (347)
T ss_dssp             HHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSS
T ss_pred             HHHHHhcCCCceEEEECCCCHHHHHHHHHHHhcCCEEEEECCC
Confidence             12223  3579999999876432  23466777677778754

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=96.42  E-value=0.0041  Score=53.71  Aligned_cols=37  Identities=27%  Similarity=0.326  Sum_probs=34.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         4 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~   40 (250)
T 2fwm_X            4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQA   40 (250)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCc
Confidence            5789999999998889999999999999999998875

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.42  E-value=0.0026  Score=50.39  Aligned_cols=54  Identities=13%  Similarity=0.117  Sum_probs=42.6

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------C---Hhh-hcCCCcEEEEecCCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------N---PEQ-ITSEADIVIAAAGVA  190 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~------------------~---l~~-~l~~ADIVIsa~g~p  190 (272)
                      .++++|+|.|.. |+.++..|.+.|..|++++++.+                  +   +++ .+.+||+||.+++..
T Consensus         7 ~~~viIiG~G~~-G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~   82 (140)
T 3fwz_A            7 CNHALLVGYGRV-GSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNG   82 (140)
T ss_dssp             CSCEEEECCSHH-HHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCH
T ss_pred             CCCEEEECcCHH-HHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCCh
Confidence            357999999885 99999999999999999987631                  1   112 357899999998864

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.41  E-value=0.004  Score=53.85  Aligned_cols=39  Identities=23%  Similarity=0.242  Sum_probs=35.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~   43 (261)
T 3n74_A            5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDK   43 (261)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence            467899999999988889999999999999999998763

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.41  E-value=0.003  Score=55.58  Aligned_cols=55  Identities=18%  Similarity=0.207  Sum_probs=43.7

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------C------------------------CHhhhcCCCcEEE
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------K------------------------NPEQITSEADIVI  184 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------~------------------------~l~~~l~~ADIVI  184 (272)
                      +++|+|.|++|.+|+.++..|+++|.+|+++.|+.       .                        ++.+.++.+|+||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   81 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI   81 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence            57899999988889999999999999999887764       0                        1235567788888


Q ss_pred             EecCCC
Q 024116          185 AAAGVA  190 (272)
Q Consensus       185 sa~g~p  190 (272)
                      +++|..
T Consensus        82 ~~a~~~   87 (307)
T 2gas_A           82 CAAGRL   87 (307)
T ss_dssp             ECSSSS
T ss_pred             ECCccc
Confidence            877743

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.40  E-value=0.0013  Score=54.74  Aligned_cols=89  Identities=15%  Similarity=0.184  Sum_probs=56.5

Q ss_pred             HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------CHh----hhc--
Q 024116          123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------NPE----QIT--  177 (272)
Q Consensus       123 ~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------------~l~----~~l--  177 (272)
                      ++..+.+..---.|++|+|.|+++-+|+.+++++...|++|+++.++.+                   +..    +..  
T Consensus        26 a~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~  105 (198)
T 1pqw_A           26 AWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDG  105 (198)
T ss_dssp             HHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTT
T ss_pred             HHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCC
Confidence            3444443322237999999996555699999999999999988876421                   111    111  


Q ss_pred             CCCcEEEEecCCCcc-ccCCCcCCCcEEEEeeeCC
Q 024116          178 SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       178 ~~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~~~  211 (272)
                      ...|+||+++|.+.+ ---+.++++-.++.+|...
T Consensus       106 ~~~D~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~  140 (198)
T 1pqw_A          106 YGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKD  140 (198)
T ss_dssp             CCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGG
T ss_pred             CCCeEEEECCchHHHHHHHHHhccCCEEEEEcCCC
Confidence            247888888874222 1123567777777887653

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=96.39  E-value=0.0033  Score=54.80  Aligned_cols=38  Identities=24%  Similarity=0.239  Sum_probs=34.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (260)
T 1nff_A            4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD   41 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999999988899999999999999999988763

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=96.39  E-value=0.0064  Score=55.52  Aligned_cols=57  Identities=23%  Similarity=0.249  Sum_probs=46.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCCC-----------------------CHhhhcCCCcEEEEecC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK-----------------------NPEQITSEADIVIAAAG  188 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t~-----------------------~l~~~l~~ADIVIsa~g  188 (272)
                      .+++++|+|.|++|.+|+.++..|+++| .+|+++.|...                       .+.+.++.+|+||...|
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~  108 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLAT  108 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCC
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCC
Confidence            4688999999999989999999999999 99999876521                       12345678899998777


Q ss_pred             C
Q 024116          189 V  189 (272)
Q Consensus       189 ~  189 (272)
                      .
T Consensus       109 ~  109 (377)
T 2q1s_A          109 Y  109 (377)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=96.39  E-value=0.032  Score=51.13  Aligned_cols=169  Identities=12%  Similarity=0.091  Sum_probs=109.3

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCCCC--CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCccc
Q 024116           22 SQTYVRNKIKACEEVGIKSIVTEFADGC--TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFH   99 (272)
Q Consensus        22 s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~--~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~~   99 (272)
                      |..=--+-..++.++|.++.+..-....  .-+-+.+.++-|+.-  +|+|.+--|-.     . .+..+.  +-. .+-
T Consensus        57 STRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~--~D~iviR~~~~-----~-~~~~lA--~~~-~vP  125 (321)
T 1oth_A           57 STRTRLSTETGFALLGGHPCFLTTQDIHLGVNESLTDTARVLSSM--ADAVLARVYKQ-----S-DLDTLA--KEA-SIP  125 (321)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEETTTSCBTTTBCHHHHHHHHHHH--CSEEEEECSCH-----H-HHHHHH--HHC-SSC
T ss_pred             CcchHHHHHHHHHHcCCeEEEECCCcCcCCCCCCHHHHHHHHHHh--CCEEEEeCCCh-----h-HHHHHH--HhC-CCC
Confidence            3333335568899999999888632210  123466666666653  57888876622     2 222221  111 234


Q ss_pred             cccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC---------
Q 024116          100 PLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL---------  169 (272)
Q Consensus       100 ~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~---------  169 (272)
                      .+|.|       .+.+.||=+.+ ++.+.++. ..++|.+++++|-+..|.+.++..|...|++|+++.-.         
T Consensus       126 VINa~-------~~~~HPtQaLaDl~Ti~e~~-g~l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~  197 (321)
T 1oth_A          126 IINGL-------SDLYHPIQILADYLTLQEHY-SSLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVT  197 (321)
T ss_dssp             EEESC-------CSSCCHHHHHHHHHHHHHHH-SCCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHH
T ss_pred             EEcCC-------CCCCCcHHHHHHHHHHHHHh-CCcCCcEEEEECCchhhHHHHHHHHHHcCCeEEEECCccccCCHHHH
Confidence            45632       24577998888 55555555 47999999999998888999999999999999998633         


Q ss_pred             ----------------CCCHhhhcCCCcEEEEec----CCC-----------cc-ccCCCc---CCCcEEEEeee
Q 024116          170 ----------------TKNPEQITSEADIVIAAA----GVA-----------NL-VRGSWL---KPGAVVLDVGT  209 (272)
Q Consensus       170 ----------------t~~l~~~l~~ADIVIsa~----g~p-----------~~-i~~~~v---k~g~vviDig~  209 (272)
                                      +.++.+.+++||+|.+-+    |..           .+ ++.+.+   +++++|.=.+.
T Consensus       198 ~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~d~w~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~lP  272 (321)
T 1oth_A          198 KLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLP  272 (321)
T ss_dssp             HHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECSC
T ss_pred             HHHHHHHHHcCCeEEEEECHHHHhccCCEEEEeccccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECCCC
Confidence                            235678899999999844    321           12 444433   56777777664

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=96.38  E-value=0.0056  Score=58.89  Aligned_cols=54  Identities=19%  Similarity=0.219  Sum_probs=46.3

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------CHhhhcCCCcEEEEecCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------NPEQITSEADIVIAAAGV  189 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-----------~l~~~l~~ADIVIsa~g~  189 (272)
                      +++|+|.|++|.+|+.++..|+++|.+|+++.|...           .+.+.+..+|+||...+.
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~~d~~~~~~~~l~~~D~Vih~A~~  211 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDPLNPASDLLDGADVLVHLAGE  211 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEECCTTSCCTTTTTTCSEEEECCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccceeecccchhHHhcCCCCEEEECCCC
Confidence            789999999999999999999999999999988632           235677889999987774

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=96.37  E-value=0.0057  Score=53.27  Aligned_cols=39  Identities=18%  Similarity=0.207  Sum_probs=33.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   55 (253)
T 2nm0_A           17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSG   55 (253)
T ss_dssp             ---CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            357899999999998899999999999999999998764

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.37  E-value=0.0043  Score=56.88  Aligned_cols=95  Identities=22%  Similarity=0.253  Sum_probs=63.7

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhh-
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQ-  175 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------~~l~~-  175 (272)
                      +||....++..|.+..---.|++|+|+|+|+ +|..+++++...|++|+++.++.                   .++.+ 
T Consensus       170 l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~-vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~  248 (363)
T 3uog_A          170 LPCAGLTAWFALVEKGHLRAGDRVVVQGTGG-VALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVER  248 (363)
T ss_dssp             TTTHHHHHHHHHTTTTCCCTTCEEEEESSBH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHH
T ss_pred             cccHHHHHHHHHHHhcCCCCCCEEEEECCCH-HHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHH
Confidence            4555555556664333334799999999665 69999999999999998887542                   12222 


Q ss_pred             ---hc--CCCcEEEEecCCCcc-ccCCCcCCCcEEEEeeeCC
Q 024116          176 ---IT--SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       176 ---~l--~~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~~~  211 (272)
                         ..  +.+|+||.++|.+.+ ---+.++++-.++.+|...
T Consensus       249 v~~~~~g~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~  290 (363)
T 3uog_A          249 VYALTGDRGADHILEIAGGAGLGQSLKAVAPDGRISVIGVLE  290 (363)
T ss_dssp             HHHHHTTCCEEEEEEETTSSCHHHHHHHEEEEEEEEEECCCS
T ss_pred             HHHHhCCCCceEEEECCChHHHHHHHHHhhcCCEEEEEecCC
Confidence               22  258999999994432 1234677877888888654

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.37  E-value=0.0021  Score=58.74  Aligned_cols=89  Identities=15%  Similarity=0.120  Sum_probs=60.0

Q ss_pred             HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhhc-----C
Q 024116          123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQIT-----S  178 (272)
Q Consensus       123 ~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------~~l~~~l-----~  178 (272)
                      ++..+.+..---.|++|+|.|+++.+|..+++++...|++|+++.++.                   .++.+.+     .
T Consensus       155 a~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~  234 (353)
T 4dup_A          155 VWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQ  234 (353)
T ss_dssp             HHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSS
T ss_pred             HHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCC
Confidence            344443322223799999997656679999999999999998887542                   2222222     2


Q ss_pred             CCcEEEEecCCCcc-ccCCCcCCCcEEEEeeeCC
Q 024116          179 EADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       179 ~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~~~  211 (272)
                      ..|+||.++|.+.+ -.-+.++++-.++.+|...
T Consensus       235 g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~g~~~  268 (353)
T 4dup_A          235 GVDIILDMIGAAYFERNIASLAKDGCLSIIAFLG  268 (353)
T ss_dssp             CEEEEEESCCGGGHHHHHHTEEEEEEEEECCCTT
T ss_pred             CceEEEECCCHHHHHHHHHHhccCCEEEEEEecC
Confidence            48999999997643 1234567777788888553

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.36  E-value=0.0043  Score=54.44  Aligned_cols=39  Identities=23%  Similarity=0.163  Sum_probs=35.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   55 (273)
T 1ae1_A           17 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   55 (273)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468999999999988899999999999999999998763

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=96.36  E-value=0.0037  Score=54.10  Aligned_cols=37  Identities=27%  Similarity=0.357  Sum_probs=33.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         1 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~   37 (255)
T 2q2v_A            1 TLKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFG   37 (255)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999998888999999999999999998775

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.36  E-value=0.0027  Score=57.24  Aligned_cols=89  Identities=15%  Similarity=0.006  Sum_probs=59.4

Q ss_pred             HHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------------CCHhhhc----
Q 024116          122 GCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------KNPEQIT----  177 (272)
Q Consensus       122 g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------------~~l~~~l----  177 (272)
                      .++..+.+..---.|++|+|.|+++.+|..+++++...|++|+++.++.                    .++.+.+    
T Consensus       132 ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~  211 (333)
T 1v3u_A          132 TAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKAS  211 (333)
T ss_dssp             HHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHC
T ss_pred             HHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHh
Confidence            3445553332234799999999955579999999999999998887642                    1222222    


Q ss_pred             -CCCcEEEEecCCCcc-ccCCCcCCCcEEEEeeeC
Q 024116          178 -SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       178 -~~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~~  210 (272)
                       ...|++|+++|.+.+ ---+.++++-.++.+|..
T Consensus       212 ~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~  246 (333)
T 1v3u_A          212 PDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAI  246 (333)
T ss_dssp             TTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCC
T ss_pred             CCCCeEEEECCChHHHHHHHHHHhcCCEEEEEecc
Confidence             247999999886432 122467777777778754

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=96.36  E-value=0.0049  Score=53.91  Aligned_cols=40  Identities=23%  Similarity=0.247  Sum_probs=35.7

Q ss_pred             hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          130 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       130 ~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ...+++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus        23 ~~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~   62 (271)
T 4iin_A           23 NAMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRS   62 (271)
T ss_dssp             -CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             hhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3467899999999998888999999999999999999874

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=96.36  E-value=0.0054  Score=53.76  Aligned_cols=58  Identities=12%  Similarity=0.149  Sum_probs=44.9

Q ss_pred             ccceEEEEcC----------------CcccHHHHHHHHHhCCCEEEEEeCCCC---------------C-------Hhhh
Q 024116          135 MGKNAVVIGR----------------SNIVGLPTSLLLQRHHATVSIVHALTK---------------N-------PEQI  176 (272)
Q Consensus       135 ~gk~v~ViG~----------------g~~vG~~la~~L~~~ga~V~v~~~~t~---------------~-------l~~~  176 (272)
                      +||+|+|-|+                +|-+|.++|..|+.+||.|+++++...               +       +.+.
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~~~~~~~~~~~v~s~~em~~~v~~~   81 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPEPHPNLSIREITNTKDLLIEMQER   81 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCCCCCTTEEEEECCSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCCCeEEEEHhHHHHHHHHHHHh
Confidence            5899999998                565699999999999999999997531               0       1234


Q ss_pred             cCCCcEEEEecCCCcc
Q 024116          177 TSEADIVIAAAGVANL  192 (272)
Q Consensus       177 l~~ADIVIsa~g~p~~  192 (272)
                      ...+|++|.+.+...+
T Consensus        82 ~~~~Dili~aAAvsD~   97 (232)
T 2gk4_A           82 VQDYQVLIHSMAVSDY   97 (232)
T ss_dssp             GGGCSEEEECSBCCSE
T ss_pred             cCCCCEEEEcCccccc
Confidence            5689999988885443

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.35  E-value=0.003  Score=56.93  Aligned_cols=58  Identities=19%  Similarity=0.232  Sum_probs=45.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------------------CCHhhhcC--CCcEE
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------KNPEQITS--EADIV  183 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t----------------------------~~l~~~l~--~ADIV  183 (272)
                      +..++|+|.|++|.+|+.++..|+++|.+|+++.|..                            .++.+.++  .+|+|
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V   87 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIV   87 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEE
Confidence            3467999999988899999999999999999998854                            12345667  89999


Q ss_pred             EEecCCCc
Q 024116          184 IAAAGVAN  191 (272)
Q Consensus       184 Isa~g~p~  191 (272)
                      |.+++..+
T Consensus        88 i~~a~~~n   95 (346)
T 3i6i_A           88 VSTVGGES   95 (346)
T ss_dssp             EECCCGGG
T ss_pred             EECCchhh
Confidence            98887543

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=96.34  E-value=0.0031  Score=54.71  Aligned_cols=38  Identities=21%  Similarity=0.218  Sum_probs=34.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   47 (260)
T 2zat_A           10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRK   47 (260)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999889999999999999999999875

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.34  E-value=0.0038  Score=54.96  Aligned_cols=37  Identities=19%  Similarity=0.144  Sum_probs=34.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   55 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARG   55 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999989999999999999999999875

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.34  E-value=0.001  Score=61.43  Aligned_cols=74  Identities=16%  Similarity=0.139  Sum_probs=54.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcC----CCcEEEEecCCCc---ccc
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITS----EADIVIAAAGVAN---LVR  194 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~----~ADIVIsa~g~p~---~i~  194 (272)
                      -++|.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++    ++|+||.+++...   ++.
T Consensus         8 ~~kIgIIG~G~m-G~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~~~~~~vl~   86 (341)
T 3ktd_A            8 SRPVCILGLGLI-GGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPMTAIDSLLD   86 (341)
T ss_dssp             SSCEEEECCSHH-HHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCHHHHHHHHH
T ss_pred             CCEEEEEeecHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCHHHHHHHHH
Confidence            467999999886 9999999999999999998863              23445454    4799999998422   121


Q ss_pred             C-CCcCCCcEEEEeeeC
Q 024116          195 G-SWLKPGAVVLDVGTC  210 (272)
Q Consensus       195 ~-~~vk~g~vviDig~~  210 (272)
                      . ..++++++|+|++..
T Consensus        87 ~l~~~~~~~iv~Dv~Sv  103 (341)
T 3ktd_A           87 AVHTHAPNNGFTDVVSV  103 (341)
T ss_dssp             HHHHHCTTCCEEECCSC
T ss_pred             HHHccCCCCEEEEcCCC
Confidence            0 013789999999854

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=96.34  E-value=0.0025  Score=52.76  Aligned_cols=53  Identities=19%  Similarity=0.297  Sum_probs=42.1

Q ss_pred             cc-eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------CHhhhcC---CCcEEEEecCC
Q 024116          136 GK-NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------NPEQITS---EADIVIAAAGV  189 (272)
Q Consensus       136 gk-~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~----------~l~~~l~---~ADIVIsa~g~  189 (272)
                      || +++|.|+++-+|+.++..|+ +|++|+++.|+..          ++++.++   ..|+||...|.
T Consensus         2 ~kM~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag~   68 (202)
T 3d7l_A            2 NAMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAIVSATGS   68 (202)
T ss_dssp             CSCEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSSSEECCTTCHHHHHHHHHHHCCEEEEEECCCC
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCccceeeecCCHHHHHHHHHHhCCCCEEEECCCC
Confidence            56 89999999999999999999 9999999988631          2233333   47999988874

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.34  E-value=0.012  Score=53.76  Aligned_cols=93  Identities=15%  Similarity=0.219  Sum_probs=64.4

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC--------------------Hhh
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN--------------------PEQ  175 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~--------------------l~~  175 (272)
                      +||....++..+++.++ -.|++|+|+|+|+ +|..+++++...|++|+.+.++...                    +.+
T Consensus       161 l~~~~~ta~~~l~~~~~-~~g~~VlV~GaG~-vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~  238 (360)
T 1piw_A          161 LLCGGLTVYSPLVRNGC-GPGKKVGIVGLGG-IGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGE  238 (360)
T ss_dssp             GGTHHHHHHHHHHHTTC-STTCEEEEECCSH-HHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHH
T ss_pred             hhhhHHHHHHHHHHcCC-CCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHH
Confidence            45554555666766433 3699999999955 6999999999999998888765322                    212


Q ss_pred             hc-CCCcEEEEecCC--Ccccc--CCCcCCCcEEEEeeeC
Q 024116          176 IT-SEADIVIAAAGV--ANLVR--GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       176 ~l-~~ADIVIsa~g~--p~~i~--~~~vk~g~vviDig~~  210 (272)
                      .+ ..+|+||.++|.  +..+.  -+.++++-.++.+|..
T Consensus       239 ~~~~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g~~  278 (360)
T 1piw_A          239 KYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIP  278 (360)
T ss_dssp             HSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCC
T ss_pred             HhhcCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEecCC
Confidence            22 357999999987  55442  3466777778888754

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=96.33  E-value=0.0041  Score=56.48  Aligned_cols=72  Identities=18%  Similarity=0.207  Sum_probs=54.2

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCC-------CEEEEEeCCCC---------------------------------CHhh
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHH-------ATVSIVHALTK---------------------------------NPEQ  175 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~g-------a~V~v~~~~t~---------------------------------~l~~  175 (272)
                      .++|.|||.|.+ |.+++..|++.|       .+|++++++..                                 ++.+
T Consensus         8 ~mkI~iIG~G~m-G~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (354)
T 1x0v_A            8 SKKVCIVGSGNW-GSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQ   86 (354)
T ss_dssp             CEEEEEECCSHH-HHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHH
T ss_pred             CCeEEEECCCHH-HHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHH
Confidence            368999999885 999999999988       79999987543                                 1234


Q ss_pred             hcCCCcEEEEecCCCc---ccc--CCCcCCCcEEEEee
Q 024116          176 ITSEADIVIAAAGVAN---LVR--GSWLKPGAVVLDVG  208 (272)
Q Consensus       176 ~l~~ADIVIsa~g~p~---~i~--~~~vk~g~vviDig  208 (272)
                      .+++||+||.+++...   .+.  ...++++++|+++.
T Consensus        87 ~~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~  124 (354)
T 1x0v_A           87 AAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLI  124 (354)
T ss_dssp             HHTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECC
T ss_pred             HHcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEEC
Confidence            5678999999997532   121  23567888999985

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=96.33  E-value=0.0039  Score=54.47  Aligned_cols=38  Identities=16%  Similarity=0.063  Sum_probs=34.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++++|+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus        25 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   62 (260)
T 3un1_A           25 RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSI   62 (260)
T ss_dssp             HTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            36899999999988889999999999999999998763

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.32  E-value=0.0047  Score=53.49  Aligned_cols=38  Identities=21%  Similarity=0.237  Sum_probs=34.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~   41 (257)
T 3tpc_A            4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKP   41 (257)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            57899999999988889999999999999999998764

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=96.32  E-value=0.016  Score=55.41  Aligned_cols=83  Identities=22%  Similarity=0.308  Sum_probs=63.4

Q ss_pred             HHHHHHHhCCCCccceEEEEcCC---------cccHHHHHHHHHhCCCEEEEEeCC---------------CCCHhhhcC
Q 024116          123 CIELLIRSGVEIMGKNAVVIGRS---------NIVGLPTSLLLQRHHATVSIVHAL---------------TKNPEQITS  178 (272)
Q Consensus       123 ~~~~l~~~~~~l~gk~v~ViG~g---------~~vG~~la~~L~~~ga~V~v~~~~---------------t~~l~~~l~  178 (272)
                      +++.+++...+++|++|+|+|-+         ++-...++..|.++|++|.+.+-.               ..++++.++
T Consensus       320 vv~~l~~~~~~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L~~~Ga~V~~~DP~~~~~~~~~~~~~~~~~~~~~~a~~  399 (444)
T 3vtf_A          320 AVQLLEERLGGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLLLERGARVYVHDPMAMEKARAVLGDSVTYVEDPQALLD  399 (444)
T ss_dssp             HHHHHHHHHTCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHGGGSEECSCHHHHHH
T ss_pred             HHHHHHHHccccCCCEEEEEeeecCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChHHHHhcCCCceecCCHHHHHh
Confidence            44555556668899999999932         223678899999999999998743               146678899


Q ss_pred             CCcEEEEecCCCccccCCCcCCCcEEEEe
Q 024116          179 EADIVIAAAGVANLVRGSWLKPGAVVLDV  207 (272)
Q Consensus       179 ~ADIVIsa~g~p~~i~~~~vk~g~vviDi  207 (272)
                      +||.||-+|..+.|-..+|  ++.+|+|.
T Consensus       400 ~aDavvi~t~h~ef~~ld~--~~~vv~D~  426 (444)
T 3vtf_A          400 QVEGVIIATAWPQYEGLDY--RGKVVVDG  426 (444)
T ss_dssp             HCSEEEECSCCGGGGGSCC--TTCEEEES
T ss_pred             CCCEEEEccCCHHHhCCCc--CCCEEEEC
Confidence            9999999999887754454  45789994

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.32  E-value=0.0036  Score=55.18  Aligned_cols=37  Identities=27%  Similarity=0.196  Sum_probs=34.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        26 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~   62 (276)
T 2b4q_A           26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARD   62 (276)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999998888999999999999999999875

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=96.31  E-value=0.0054  Score=53.99  Aligned_cols=39  Identities=26%  Similarity=0.307  Sum_probs=34.6

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ..+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        26 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~   64 (271)
T 3v2g_A           26 SISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVN   64 (271)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            457899999999998888999999999999999988544

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.31  E-value=0.006  Score=54.18  Aligned_cols=39  Identities=21%  Similarity=0.343  Sum_probs=35.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.++.
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   81 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDE   81 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            468999999999988889999999999999999987753

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=96.31  E-value=0.018  Score=53.57  Aligned_cols=142  Identities=13%  Similarity=0.080  Sum_probs=94.0

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC--CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCccccccccc
Q 024116           28 NKIKACEEVGIKSIVTEFADGC--TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGN  105 (272)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~l~~~~--~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~~~~n~g~  105 (272)
                      +=..+++++|.++.+..-....  ..|-+.+.++-|+.-  +|+|.+--|  .   . ..++.+...-.   +-.+|   
T Consensus        87 SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~--~D~IviR~~--~---~-~~~~~la~~s~---vPVIN---  152 (358)
T 4h31_A           87 AFEVAAFDQGAQVTYIGPSGSQIGDKESMKDTARVLGRM--YDGIQYRGF--G---Q-AIVEELGAFAG---VPVWN---  152 (358)
T ss_dssp             HHHHHHHHTTCEEEEECSSSSCBTTTBCHHHHHHHHHHH--CSEEEEECS--C---H-HHHHHHHHHSS---SCEEE---
T ss_pred             HHHHHHHHcCCeEEECCcccccccCccchhHHHHHhhcc--CceeEeccc--c---h-hHHHHhhhhcc---CceEC---
Confidence            4567899999999866532110  234477777777664  788888755  2   2 22222221111   12223   


Q ss_pred             cccCCCCCccccCCHHH-HHHHHHHhC-CCCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC-------------
Q 024116          106 LAMRGREPLFIPCTPKG-CIELLIRSG-VEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL-------------  169 (272)
Q Consensus       106 l~~~~~~~~~~p~Ta~g-~~~~l~~~~-~~l~gk~v~ViG~g-~~vG~~la~~L~~~ga~V~v~~~~-------------  169 (272)
                         | ..+.+.||=+.+ ++.+.++.+ ..++|++++++|-+ ..|.+.++..+...|++|+++.-.             
T Consensus       153 ---G-~g~~~HPtQaL~Dl~Ti~e~~~~~~l~gl~ia~vGD~~~~va~S~~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~  228 (358)
T 4h31_A          153 ---G-LTDEFHPTQILADFLTMLEHSQGKALADIQFAYLGDARNNVGNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQ  228 (358)
T ss_dssp             ---S-CCSSCCHHHHHHHHHHHHHTTTTCCGGGCEEEEESCTTSHHHHHHHHHHHHHTCEEEEESCGGGSCCHHHHHHHH
T ss_pred             ---C-CCcCCCchHHHHHHHHHHHHhcCCCcCceEEEecCCCCcccchHHHHHHHhcCceEEEeCCcccCCCHHHHHHHH
Confidence               2 245567997777 455555444 47999999999965 457999999999999999999632             


Q ss_pred             ------------CCCHhhhcCCCcEEEEec
Q 024116          170 ------------TKNPEQITSEADIVIAAA  187 (272)
Q Consensus       170 ------------t~~l~~~l~~ADIVIsa~  187 (272)
                                  +.++.+.+++||+|.+-+
T Consensus       229 ~~~~~~g~~v~~~~d~~eav~~aDvvyt~~  258 (358)
T 4h31_A          229 AIAKQTGGKITLTENVAEGVQGCDFLYTDV  258 (358)
T ss_dssp             HHHHHHTCEEEEESCHHHHHTTCSEEEECC
T ss_pred             HHHHHcCCcceeccCHHHHhccCcEEEEEE
Confidence                        246788999999998644

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.30  E-value=0.0055  Score=54.52  Aligned_cols=52  Identities=19%  Similarity=0.205  Sum_probs=44.7

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCC---EEEEEeCCC---------------CCHhhhcCCCcEEEEecC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHALT---------------KNPEQITSEADIVIAAAG  188 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga---~V~v~~~~t---------------~~l~~~l~~ADIVIsa~g  188 (272)
                      .+++.|||.|.+ |.+++..|.+.|.   +|++++++.               .+..+.+++||+||.++.
T Consensus         3 ~~~I~iIG~G~m-G~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~   72 (280)
T 3tri_A            3 TSNITFIGGGNM-ARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVK   72 (280)
T ss_dssp             CSCEEEESCSHH-HHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSC
T ss_pred             CCEEEEEcccHH-HHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeC
Confidence            478999999886 9999999999997   899999864               255677899999999994

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=96.30  E-value=0.0041  Score=53.83  Aligned_cols=39  Identities=28%  Similarity=0.276  Sum_probs=35.0

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|+.
T Consensus         5 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~   43 (248)
T 3op4_A            5 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSE   43 (248)
T ss_dssp             TCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357899999999988889999999999999999998763

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=96.29  E-value=0.0058  Score=54.76  Aligned_cols=57  Identities=18%  Similarity=0.211  Sum_probs=43.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC-----------------------HhhhcCC--CcEEEEec
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN-----------------------PEQITSE--ADIVIAAA  187 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~-----------------------l~~~l~~--ADIVIsa~  187 (272)
                      .+++++|+|.|++|.+|+.++..|+++|++|+++.|....                       +.+.++.  .|+||...
T Consensus        18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A   97 (333)
T 2q1w_A           18 GSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTA   97 (333)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECc
Confidence            3578999999998889999999999999999998775311                       2234455  89999777


Q ss_pred             CC
Q 024116          188 GV  189 (272)
Q Consensus       188 g~  189 (272)
                      |.
T Consensus        98 ~~   99 (333)
T 2q1w_A           98 AS   99 (333)
T ss_dssp             CC
T ss_pred             ee
Confidence            64

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.29  E-value=0.0068  Score=55.40  Aligned_cols=54  Identities=28%  Similarity=0.456  Sum_probs=44.1

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHhhhcCCCcEEEEecC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAG  188 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t--------------------------~~l~~~l~~ADIVIsa~g  188 (272)
                      .+||.|||+|. +|.+++..|+..|. +|++.+++.                          .++ +.+++||+||.++|
T Consensus        14 ~~kI~ViGaG~-vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg   91 (328)
T 2hjr_A           14 RKKISIIGAGQ-IGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAG   91 (328)
T ss_dssp             CCEEEEECCSH-HHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred             CCEEEEECCCH-HHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCC
Confidence            36899999966 59999999999997 888887652                          233 67899999999998


Q ss_pred             CCc
Q 024116          189 VAN  191 (272)
Q Consensus       189 ~p~  191 (272)
                      .|.
T Consensus        92 ~p~   94 (328)
T 2hjr_A           92 VPR   94 (328)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            663

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=96.29  E-value=0.0023  Score=61.53  Aligned_cols=72  Identities=17%  Similarity=0.280  Sum_probs=54.6

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------CHhhhc---CCCcEEEEecCCCc-c-
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------NPEQIT---SEADIVIAAAGVAN-L-  192 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------------~l~~~l---~~ADIVIsa~g~p~-~-  192 (272)
                      .+|.|||.|.+ |.+++..|.+.|.+|++++|+..                   ++++.+   +++|+||.+++.+. + 
T Consensus         3 m~IgvIG~G~m-G~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~   81 (482)
T 2pgd_A            3 ADIALIGLAVM-GQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD   81 (482)
T ss_dssp             BSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred             CeEEEEChHHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHH
Confidence            47999999885 99999999999999999987631                   234443   48999999998753 1 


Q ss_pred             --cc--CCCcCCCcEEEEeee
Q 024116          193 --VR--GSWLKPGAVVLDVGT  209 (272)
Q Consensus       193 --i~--~~~vk~g~vviDig~  209 (272)
                        +.  ...+++|.+|||++.
T Consensus        82 ~vl~~l~~~l~~g~iII~~s~  102 (482)
T 2pgd_A           82 NFIEKLVPLLDIGDIIIDGGN  102 (482)
T ss_dssp             HHHHHHHHHCCTTCEEEECSC
T ss_pred             HHHHHHHhhcCCCCEEEECCC
Confidence              21  124678899999863

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=96.29  E-value=0.0053  Score=55.30  Aligned_cols=57  Identities=14%  Similarity=0.141  Sum_probs=46.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------------------CHhhhcCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------------------NPEQITSEA  180 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~--------------------------------~l~~~l~~A  180 (272)
                      ++++++|+|.|++|.+|+.++..|+++|++|+++.|...                                .+.+.++..
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            467899999999888999999999999999999876421                                123556788


Q ss_pred             cEEEEecCC
Q 024116          181 DIVIAAAGV  189 (272)
Q Consensus       181 DIVIsa~g~  189 (272)
                      |+||...|.
T Consensus       104 d~vih~A~~  112 (352)
T 1sb8_A          104 DYVLHQAAL  112 (352)
T ss_dssp             SEEEECCSC
T ss_pred             CEEEECCcc
Confidence            999988774

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=96.29  E-value=0.0031  Score=55.79  Aligned_cols=56  Identities=14%  Similarity=0.189  Sum_probs=45.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------CCHhhhcC--CCcEEEEecCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------KNPEQITS--EADIVIAAAGVA  190 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------~~l~~~l~--~ADIVIsa~g~p  190 (272)
                      .+++|+|.|++|.+|+.++..|+++|.+|+++.+..       .++.+.++  ..|+||...+..
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~   66 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKV   66 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccCCccCHHHHHHHHHhcCCCEEEEcCeec
Confidence            468999999999999999999999999988887642       12445666  899999887743

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=96.28  E-value=0.0042  Score=53.96  Aligned_cols=38  Identities=26%  Similarity=0.293  Sum_probs=34.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|.
T Consensus        12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~   49 (278)
T 2bgk_A           12 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIA   49 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            35789999999999889999999999999999998775

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.28  E-value=0.0099  Score=52.72  Aligned_cols=37  Identities=19%  Similarity=0.048  Sum_probs=33.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .++|++|+|.|++|.+|+.++..|+++|++|+++.|+
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   44 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3578999999998889999999999999999988764

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=96.28  E-value=0.0039  Score=54.19  Aligned_cols=37  Identities=19%  Similarity=0.196  Sum_probs=34.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|++++..|+++|++|+++.|+
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   39 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRT   39 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999998888999999999999999999876

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=96.27  E-value=0.0048  Score=54.27  Aligned_cols=57  Identities=14%  Similarity=0.176  Sum_probs=43.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----C---Hh------------hhcCCCcEEEEecCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----N---PE------------QITSEADIVIAAAGVA  190 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~----~---l~------------~~l~~ADIVIsa~g~p  190 (272)
                      +.+++|+|.|++|.+|+.++..|+++|.+|+++.|...    .   +.            ..+.+.|+||.+.+..
T Consensus         5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~d~vi~~a~~~   80 (321)
T 3vps_A            5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLSDVRLVYHLASHK   80 (321)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHTTEEEEEECCCCC
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccccCCEEEECCccC
Confidence            46899999999888999999999999999999987543    1   11            1122689999887743

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=96.26  E-value=0.0057  Score=54.03  Aligned_cols=39  Identities=18%  Similarity=0.293  Sum_probs=35.4

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ..+++||+++|.|+++-+|++++..|+++|++|+++.|+
T Consensus        22 ~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~   60 (277)
T 4dqx_A           22 SMDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVN   60 (277)
T ss_dssp             CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            356899999999998888999999999999999999876

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=96.26  E-value=0.0044  Score=53.18  Aligned_cols=40  Identities=23%  Similarity=0.351  Sum_probs=36.1

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ..++++|+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         9 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   48 (249)
T 3f9i_A            9 MIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNE   48 (249)
T ss_dssp             CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4578999999999988899999999999999999998763

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*

Probab=96.26  E-value=0.0041  Score=60.82  Aligned_cols=92  Identities=13%  Similarity=0.205  Sum_probs=74.4

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHh----CCC-------EEEEEeCC--------C---------
Q 024116          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR----HHA-------TVSIVHAL--------T---------  170 (272)
Q Consensus       119 Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~----~ga-------~V~v~~~~--------t---------  170 (272)
                      |..|++..++-.+.+++.-++++.|+|.+ |-+++.+|..    .|.       .+++|+++        .         
T Consensus       267 ~lAgllnAlki~gk~l~d~riv~~GAGaA-gigia~ll~~~m~~~Gl~~eeA~~~i~~~D~~Gli~~~r~~~l~~~k~~~  345 (564)
T 1pj3_A          267 ALAGLLAAQKVISKPISEHKILFLGAGEA-ALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPF  345 (564)
T ss_dssp             HHHHHHHHHHHHCCCGGGCCEEEECCSHH-HHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGG
T ss_pred             HHHHHHHHHHHhCCcHhHcEEEEeCCCHH-HHHHHHHHHHHHHHcCCChHHhhCcEEEEeCCCeEECCCcccchHHHHHH
Confidence            44778999999999999999999999998 9999999886    783       68999753        0         


Q ss_pred             ---------CCHhhhcC--CCcEEEEecCCCccccCCCcC------CCcEEEEeeeCCC
Q 024116          171 ---------KNPEQITS--EADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  212 (272)
Q Consensus       171 ---------~~l~~~l~--~ADIVIsa~g~p~~i~~~~vk------~g~vviDig~~~~  212 (272)
                               .+|.+.++  .+|++|-..+.|+.+++||++      +.-+|+=++ ||.
T Consensus       346 A~~~~~~~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  403 (564)
T 1pj3_A          346 THSAPESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALS-NPT  403 (564)
T ss_dssp             CBCCCSSCCSSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             HHhcCccccCCHHHHHhhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECC-CCC
Confidence                     24777777  699999888888999999874      456777776 543

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=96.26  E-value=0.0065  Score=55.92  Aligned_cols=78  Identities=12%  Similarity=0.044  Sum_probs=55.0

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC------------------CCCHhhhc-----CCCcEEEEecCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL------------------TKNPEQIT-----SEADIVIAAAGVA  190 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~------------------t~~l~~~l-----~~ADIVIsa~g~p  190 (272)
                      -.|++|+|+|+++.+|..+++++...|++|+...+.                  ..++.+.+     ..+|+||.++|.+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~~  242 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCSPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITNV  242 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCSH
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCCch
Confidence            579999999997778999999999999987765432                  12222222     2389999999986


Q ss_pred             cccc--CCCc-CCCcEEEEeeeCC
Q 024116          191 NLVR--GSWL-KPGAVVLDVGTCP  211 (272)
Q Consensus       191 ~~i~--~~~v-k~g~vviDig~~~  211 (272)
                      ..+.  -+.+ +++-.++.+|..+
T Consensus       243 ~~~~~~~~~l~~~~G~iv~~g~~~  266 (371)
T 3gqv_A          243 ESTTFCFAAIGRAGGHYVSLNPFP  266 (371)
T ss_dssp             HHHHHHHHHSCTTCEEEEESSCCC
T ss_pred             HHHHHHHHHhhcCCCEEEEEecCc
Confidence            5432  2356 5777788888543

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=96.26  E-value=0.0037  Score=60.60  Aligned_cols=73  Identities=22%  Similarity=0.164  Sum_probs=55.3

Q ss_pred             Ccc-ceEEEEcCCcccHHHHHHHHHhC------CCEEEEEeCCC-------------------CCHhhhcCCCcEEEEec
Q 024116          134 IMG-KNAVVIGRSNIVGLPTSLLLQRH------HATVSIVHALT-------------------KNPEQITSEADIVIAAA  187 (272)
Q Consensus       134 l~g-k~v~ViG~g~~vG~~la~~L~~~------ga~V~v~~~~t-------------------~~l~~~l~~ADIVIsa~  187 (272)
                      ++| |+|.|||.|.+ |.+++..|.+.      |.+|++..+..                   .++.+.+++||+||.++
T Consensus        51 L~GiKkIgIIGlGsM-G~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaV  129 (525)
T 3fr7_A           51 FKGIKQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLI  129 (525)
T ss_dssp             TTTCSEEEEECCTTH-HHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECS
T ss_pred             hcCCCEEEEEeEhHH-HHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECC
Confidence            688 99999999986 99999999998      98888876542                   13567788999999999


Q ss_pred             CCC---cccc--CCCcCCCcEEEEe
Q 024116          188 GVA---NLVR--GSWLKPGAVVLDV  207 (272)
Q Consensus       188 g~p---~~i~--~~~vk~g~vviDi  207 (272)
                      +..   .++.  ...+++|++|+..
T Consensus       130 P~~~~~eVl~eI~p~LK~GaILs~A  154 (525)
T 3fr7_A          130 SDAAQADNYEKIFSHMKPNSILGLS  154 (525)
T ss_dssp             CHHHHHHHHHHHHHHSCTTCEEEES
T ss_pred             ChHHHHHHHHHHHHhcCCCCeEEEe
Confidence            832   2332  1246788876554

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.25  E-value=0.0073  Score=55.07  Aligned_cols=53  Identities=21%  Similarity=0.332  Sum_probs=43.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHhhhcCCCcEEEEecCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t--------------------------~~l~~~l~~ADIVIsa~g~  189 (272)
                      +||.|||+|. +|.+++..|+..|. +|.+++.+.                          .++ +.+++||+||.++|.
T Consensus         5 ~kI~VIGaG~-vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g~   82 (322)
T 1t2d_A            5 AKIVLVGSGM-IGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAGF   82 (322)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCSC
T ss_pred             CEEEEECCCH-HHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            5899999966 59999999999996 888887542                          234 678999999999986


Q ss_pred             Cc
Q 024116          190 AN  191 (272)
Q Consensus       190 p~  191 (272)
                      |.
T Consensus        83 p~   84 (322)
T 1t2d_A           83 TK   84 (322)
T ss_dssp             SS
T ss_pred             CC
Confidence            63

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.25  E-value=0.0051  Score=54.59  Aligned_cols=55  Identities=15%  Similarity=0.099  Sum_probs=44.0

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-C-----------------------------CHhhhcCCCcEEEE
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-K-----------------------------NPEQITSEADIVIA  185 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-~-----------------------------~l~~~l~~ADIVIs  185 (272)
                      .++|+|.|++|.+|+.++..|+++|.+|+++.|+. .                             ++.+.++.+|+||+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~   83 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS   83 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            47899999988889999999999999999988764 0                             13456677888888


Q ss_pred             ecCCC
Q 024116          186 AAGVA  190 (272)
Q Consensus       186 a~g~p  190 (272)
                      +++..
T Consensus        84 ~a~~~   88 (321)
T 3c1o_A           84 ALPFP   88 (321)
T ss_dssp             CCCGG
T ss_pred             CCCcc
Confidence            77743

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.24  E-value=0.0071  Score=53.49  Aligned_cols=39  Identities=23%  Similarity=0.331  Sum_probs=34.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~   43 (285)
T 3sc4_A            5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSA   43 (285)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCC
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            357899999999988889999999999999999998764

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=96.24  E-value=0.01  Score=54.27  Aligned_cols=57  Identities=14%  Similarity=0.046  Sum_probs=46.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------CHhhhcCCCcEEEEecCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAGV  189 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~---------------------~l~~~l~~ADIVIsa~g~  189 (272)
                      +.++++|+|.|++|.+|+.++..|+++|++|+++.|...                     ++.+.++..|+||...+.
T Consensus        26 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~  103 (379)
T 2c5a_A           26 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD  103 (379)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             cccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECcee
Confidence            346789999999888999999999999999999987531                     134567789999988774

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=96.24  E-value=0.0043  Score=54.90  Aligned_cols=38  Identities=24%  Similarity=0.263  Sum_probs=33.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus        25 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~   62 (277)
T 3gvc_A           25 PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADID   62 (277)
T ss_dssp             --CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            36899999999998888999999999999999999876

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=96.24  E-value=0.0033  Score=57.97  Aligned_cols=71  Identities=11%  Similarity=0.122  Sum_probs=53.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC-------CEEEEEeCCCC---------------------------------CHhhh
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHH-------ATVSIVHALTK---------------------------------NPEQI  176 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~g-------a~V~v~~~~t~---------------------------------~l~~~  176 (272)
                      ++|.|||.|.+ |.+++..|++.|       .+|++++|+..                                 ++.+.
T Consensus        22 ~kI~iIGaG~m-G~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea  100 (375)
T 1yj8_A           22 LKISILGSGNW-ASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASV  100 (375)
T ss_dssp             BCEEEECCSHH-HHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHH
T ss_pred             CEEEEECcCHH-HHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHH
Confidence            47999999885 999999999988       89999987543                                 12344


Q ss_pred             cCCCcEEEEecCCCc---ccc--CC----CcCCCcEEEEee
Q 024116          177 TSEADIVIAAAGVAN---LVR--GS----WLKPGAVVLDVG  208 (272)
Q Consensus       177 l~~ADIVIsa~g~p~---~i~--~~----~vk~g~vviDig  208 (272)
                      +++||+||.+++...   .+.  ..    .++++++|+++.
T Consensus       101 ~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~  141 (375)
T 1yj8_A          101 INDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLT  141 (375)
T ss_dssp             HTTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECC
T ss_pred             HcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeC
Confidence            678999999998432   121  23    677888999874

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=96.23  E-value=0.0045  Score=53.60  Aligned_cols=38  Identities=13%  Similarity=0.106  Sum_probs=34.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        10 ~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~   47 (266)
T 1xq1_A           10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARN   47 (266)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999999889999999999999999999875

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=96.23  E-value=0.0033  Score=54.94  Aligned_cols=56  Identities=13%  Similarity=0.167  Sum_probs=45.8

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC------HhhhcC--CCcEEEEecCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN------PEQITS--EADIVIAAAGVA  190 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~------l~~~l~--~ADIVIsa~g~p  190 (272)
                      .-++|+|.|++|.+|+.++..|+++|++|+++.|..-+      +.+.++  ..|+||...|..
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~   74 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAHT   74 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCccCCCCCHHHHHHHHHhcCCCEEEECCccC
Confidence            46899999999999999999999999999999886432      345566  689999888743

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.23  E-value=0.0047  Score=56.68  Aligned_cols=93  Identities=15%  Similarity=0.084  Sum_probs=60.3

Q ss_pred             CCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhhc-
Q 024116          118 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQIT-  177 (272)
Q Consensus       118 ~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------~~l~~~l-  177 (272)
                      +....++..+.+..---.|++|+|.|+++.+|..+++++...|++|+++.++.                   .++.+.+ 
T Consensus       146 ~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~  225 (362)
T 2c0c_A          146 VSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLK  225 (362)
T ss_dssp             THHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHH
T ss_pred             chHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHH
Confidence            33344455555443334799999999655579999999999999988887642                   1222222 


Q ss_pred             ----CCCcEEEEecCCCcc-ccCCCcCCCcEEEEeeeC
Q 024116          178 ----SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       178 ----~~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~~  210 (272)
                          ..+|+||.++|.+.+ ---+.++++-.++.+|..
T Consensus       226 ~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~g~~  263 (362)
T 2c0c_A          226 QEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFI  263 (362)
T ss_dssp             HHCTTCEEEEEECSCTHHHHHHHHHEEEEEEEEECCCG
T ss_pred             HhcCCCCCEEEECCCHHHHHHHHHHHhcCCEEEEEeCC
Confidence                247999988886322 112345666677778764

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=96.22  E-value=0.0045  Score=54.32  Aligned_cols=38  Identities=18%  Similarity=0.298  Sum_probs=34.8

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus        23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~   60 (266)
T 3grp_A           23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTR   60 (266)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999998888999999999999999998875

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.22  E-value=0.0041  Score=54.12  Aligned_cols=39  Identities=15%  Similarity=0.164  Sum_probs=35.5

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ..+++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         7 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   45 (256)
T 3gaf_A            7 PFHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLK   45 (256)
T ss_dssp             TTCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            356899999999998888999999999999999999876

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=96.22  E-value=0.0046  Score=55.82  Aligned_cols=88  Identities=18%  Similarity=0.142  Sum_probs=58.6

Q ss_pred             HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHh----hhc--
Q 024116          123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPE----QIT--  177 (272)
Q Consensus       123 ~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------~~l~----~~l--  177 (272)
                      ++..+.+..---.|++|+|.|+++.+|..+++++...|++|+++.++.                   .+..    +..  
T Consensus       133 a~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~  212 (333)
T 1wly_A          133 AQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGG  212 (333)
T ss_dssp             HHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTT
T ss_pred             HHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCC
Confidence            344444332223699999999755569999999999999998887652                   1111    111  


Q ss_pred             CCCcEEEEecCCCcc-ccCCCcCCCcEEEEeeeC
Q 024116          178 SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       178 ~~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~~  210 (272)
                      +..|+||+++|.+.+ ---+.++++-.++.+|..
T Consensus       213 ~~~d~vi~~~g~~~~~~~~~~l~~~G~iv~~g~~  246 (333)
T 1wly_A          213 KGVDVVYDSIGKDTLQKSLDCLRPRGMCAAYGHA  246 (333)
T ss_dssp             CCEEEEEECSCTTTHHHHHHTEEEEEEEEECCCT
T ss_pred             CCCeEEEECCcHHHHHHHHHhhccCCEEEEEecC
Confidence            247999999987332 122456777778888864

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=96.21  E-value=0.0054  Score=56.66  Aligned_cols=57  Identities=9%  Similarity=0.293  Sum_probs=44.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCC-----------------------CCCHhhhcCCCcEEEEecC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHAL-----------------------TKNPEQITSEADIVIAAAG  188 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~-----------------------t~~l~~~l~~ADIVIsa~g  188 (272)
                      +.++||+|||++|.||.+++..|+.+|.  +|.+++..                       +.++++.+++||+||.+.|
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence            3578999999844479999999998883  78888653                       1356678999999999998


Q ss_pred             CC
Q 024116          189 VA  190 (272)
Q Consensus       189 ~p  190 (272)
                      .|
T Consensus        86 ~p   87 (343)
T 3fi9_A           86 AP   87 (343)
T ss_dssp             --
T ss_pred             CC
Confidence            65

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=96.20  E-value=0.0036  Score=54.34  Aligned_cols=53  Identities=11%  Similarity=0.165  Sum_probs=44.8

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCC----CEEEEEeCCC--------CCHhhhcCCCcEEEEecCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHH----ATVSIVHALT--------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~g----a~V~v~~~~t--------~~l~~~l~~ADIVIsa~g~  189 (272)
                      ..++.|||.|.+ |.+++..|.+.|    ..|++++|+.        .+..+.++++|+||.+++.
T Consensus         4 ~m~i~iiG~G~m-G~~~a~~l~~~g~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~   68 (262)
T 2rcy_A            4 NIKLGFMGLGQM-GSALAHGIANANIIKKENLFYYGPSKKNTTLNYMSSNEELARHCDIIVCAVKP   68 (262)
T ss_dssp             SSCEEEECCSHH-HHHHHHHHHHHTSSCGGGEEEECSSCCSSSSEECSCHHHHHHHCSEEEECSCT
T ss_pred             CCEEEEECcCHH-HHHHHHHHHHCCCCCCCeEEEEeCCcccCceEEeCCHHHHHhcCCEEEEEeCH
Confidence            468999999885 999999999988    6899998864        2566778899999999983

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.20  E-value=0.005  Score=56.00  Aligned_cols=58  Identities=14%  Similarity=0.114  Sum_probs=47.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhC-CC-EEEEEeCCC-------------------------CCHhhhcCCCcEEEE
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRH-HA-TVSIVHALT-------------------------KNPEQITSEADIVIA  185 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~-ga-~V~v~~~~t-------------------------~~l~~~l~~ADIVIs  185 (272)
                      .++||+|+|.|++|.+|+.++..|+++ |+ +|+++.|..                         ..+.+.++..|+||.
T Consensus        18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih   97 (344)
T 2gn4_A           18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIH   97 (344)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEE
Confidence            368999999999888999999999999 97 999988752                         123456778899998


Q ss_pred             ecCCC
Q 024116          186 AAGVA  190 (272)
Q Consensus       186 a~g~p  190 (272)
                      +.|..
T Consensus        98 ~Aa~~  102 (344)
T 2gn4_A           98 AAALK  102 (344)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            88743

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=96.20  E-value=0.0059  Score=53.51  Aligned_cols=40  Identities=30%  Similarity=0.369  Sum_probs=36.0

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK  171 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~  171 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+..
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   46 (271)
T 3tzq_B            7 AELENKVAIITGACGGIGLETSRVLARAGARVVLADLPET   46 (271)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4689999999999888899999999999999999988753

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=96.19  E-value=0.011  Score=54.62  Aligned_cols=35  Identities=17%  Similarity=0.330  Sum_probs=31.1

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~  169 (272)
                      +++++|+|+|.|+. |.+++.+|+..|. ++++++..
T Consensus       116 L~~~~VlvvG~Ggl-Gs~va~~La~aGvg~i~lvD~D  151 (353)
T 3h5n_A          116 LKNAKVVILGCGGI-GNHVSVILATSGIGEIILIDND  151 (353)
T ss_dssp             HHTCEEEEECCSHH-HHHHHHHHHHHTCSEEEEEECC
T ss_pred             HhCCeEEEECCCHH-HHHHHHHHHhCCCCeEEEECCC
Confidence            57899999999995 9999999999995 89999754

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=96.19  E-value=0.0042  Score=53.80  Aligned_cols=39  Identities=31%  Similarity=0.301  Sum_probs=31.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   43 (257)
T 3tl3_A            5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRG   43 (257)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred             ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCch
Confidence            357899999999988889999999999999999998753

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=96.18  E-value=0.0026  Score=53.99  Aligned_cols=57  Identities=21%  Similarity=0.207  Sum_probs=44.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------CHhh---hcCCCcEEEEecCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------NPEQ---ITSEADIVIAAAGV  189 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------~l~~---~l~~ADIVIsa~g~  189 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+..       ++++   .+..-|++|+..|.
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~D~~~~~~v~~~~~~~g~id~lv~nAg~   69 (223)
T 3uce_A            3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTGLDISDEKSVYHYFETIGAFDHLIVTAGS   69 (223)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGTCCTTCHHHHHHHHHHHCSEEEEEECCCC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcccCCCCHHHHHHHHHHhCCCCEEEECCCC
Confidence            468999999999888899999999999999999987631       1222   23467999988884

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.18  E-value=0.005  Score=53.58  Aligned_cols=39  Identities=26%  Similarity=0.221  Sum_probs=35.0

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus        25 ~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~   63 (262)
T 3rkr_A           25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDV   63 (262)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence            357899999999988889999999999999999998763

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.17  E-value=0.0066  Score=54.95  Aligned_cols=94  Identities=17%  Similarity=0.136  Sum_probs=63.8

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhh
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQI  176 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------~~l~~~  176 (272)
                      +||.....+..++..+ --.|++|+|.|+|+ +|..+++++...|++|+.+.++.                   .++.+.
T Consensus       148 l~~~~~ta~~~l~~~~-~~~g~~VlV~GaG~-vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~  225 (340)
T 3s2e_A          148 ILCAGVTVYKGLKVTD-TRPGQWVVISGIGG-LGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAW  225 (340)
T ss_dssp             GGTHHHHHHHHHHTTT-CCTTSEEEEECCST-THHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHH
T ss_pred             ccchhHHHHHHHHHcC-CCCCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHH
Confidence            4555555566675432 24799999999977 59999999999999998886542                   122222


Q ss_pred             c----CCCcEEEEecCCCcccc--CCCcCCCcEEEEeeeCC
Q 024116          177 T----SEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       177 l----~~ADIVIsa~g~p~~i~--~~~vk~g~vviDig~~~  211 (272)
                      +    ..+|+||.++|.+..+.  -+.++++-.++.+|...
T Consensus       226 ~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~  266 (340)
T 3s2e_A          226 LQKEIGGAHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPP  266 (340)
T ss_dssp             HHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCS
T ss_pred             HHHhCCCCCEEEEeCCCHHHHHHHHHHhccCCEEEEeCCCC
Confidence            2    25788888888665432  23567777777887653

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=96.17  E-value=0.0074  Score=53.10  Aligned_cols=52  Identities=19%  Similarity=0.246  Sum_probs=44.1

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC--------HhhhcCCCcEEEEecCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN--------PEQITSEADIVIAAAGV  189 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~--------l~~~l~~ADIVIsa~g~  189 (272)
                      ||+|.|++|.+|+.++..|.++|.+|+++.|+...        ..+.+..+|.||...|.
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~l~~~d~vihla~~   61 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDELAASGLPSCDAAVNLAGE   61 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTEEEHHHHHHHCCCSCSEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCeeecchhhHhhccCCCEEEEeccC
Confidence            79999999999999999999999999999886421        24568899999987763

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.13  E-value=0.0078  Score=54.39  Aligned_cols=54  Identities=19%  Similarity=0.316  Sum_probs=43.5

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHhhhcCCCcEEEEecC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAG  188 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t--------------------------~~l~~~l~~ADIVIsa~g  188 (272)
                      .++|.|||+|. +|.+++..|+..|. +|++++++.                          .++ +.+++||+||.++|
T Consensus         4 ~~kI~VIGaG~-~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg   81 (317)
T 2ewd_A            4 RRKIAVIGSGQ-IGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITAS   81 (317)
T ss_dssp             CCEEEEECCSH-HHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCC
T ss_pred             CCEEEEECCCH-HHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCC
Confidence            46899999976 59999999999997 999987653                          123 56789999999998


Q ss_pred             CCc
Q 024116          189 VAN  191 (272)
Q Consensus       189 ~p~  191 (272)
                      .|.
T Consensus        82 ~p~   84 (317)
T 2ewd_A           82 IPG   84 (317)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            654

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=96.13  E-value=0.005  Score=53.50  Aligned_cols=39  Identities=15%  Similarity=0.092  Sum_probs=34.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         3 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~   41 (252)
T 3h7a_A            3 LTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNG   41 (252)
T ss_dssp             --CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357899999999988889999999999999999998864

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.12  E-value=0.0088  Score=52.83  Aligned_cols=38  Identities=24%  Similarity=0.295  Sum_probs=34.0

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .++.||+++|.|+++-+|+.++..|+++|++|+++.|.
T Consensus        21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~   58 (281)
T 3v2h_A           21 QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFG   58 (281)
T ss_dssp             -CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            36889999999998888999999999999999999873

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=96.12  E-value=0.006  Score=54.19  Aligned_cols=37  Identities=22%  Similarity=0.159  Sum_probs=32.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++||+|+|.|++|.+|+.++..|+++|++|+++.|+.
T Consensus         1 m~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~   37 (345)
T 2z1m_A            1 MSGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRS   37 (345)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCC
Confidence            3689999999988899999999999999999998754

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.12  E-value=0.0051  Score=54.34  Aligned_cols=54  Identities=11%  Similarity=0.183  Sum_probs=40.1

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcC--CCcEEEEecCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITS--EADIVIAAAGV  189 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~--~ADIVIsa~g~  189 (272)
                      +|+|+|.|++|.+|+.++..|+++|++|+++.|+.             ..+.+.++  +.|+||...|.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~   70 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAE   70 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------CHHHHHHHCCSEEEECC--
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEecCCCHHHHHHHHHhhCCCEEEECCcc
Confidence            68999999988899999999999999999887542             12334454  38999987774

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=96.12  E-value=0.0088  Score=52.77  Aligned_cols=33  Identities=15%  Similarity=0.073  Sum_probs=30.4

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      ||+|+|.|++|.+|+.++..|+++|++|+++.|
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r   33 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIR   33 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEe
Confidence            689999999988999999999999999998765

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=96.11  E-value=0.0063  Score=53.24  Aligned_cols=37  Identities=22%  Similarity=-0.024  Sum_probs=33.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++|+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   39 (281)
T 3m1a_A            3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRT   39 (281)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5789999999988889999999999999999998764

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=96.10  E-value=0.0073  Score=52.99  Aligned_cols=39  Identities=26%  Similarity=0.271  Sum_probs=34.5

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ..+++||.++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus        23 ~~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~   61 (269)
T 4dmm_A           23 ALPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYAS   61 (269)
T ss_dssp             -CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            357899999999998888999999999999999988763

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.10  E-value=0.01  Score=54.31  Aligned_cols=55  Identities=22%  Similarity=0.289  Sum_probs=44.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHhhhcCCCcEEEEe
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAA  186 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t--------------------------~~l~~~l~~ADIVIsa  186 (272)
                      ++.+||.|||+|. +|.+++..|+..|. +|++++...                          .+ .+.+++||+||.+
T Consensus         5 m~~~kI~viGaG~-vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d-~~a~~~aDiVIia   82 (324)
T 3gvi_A            5 MARNKIALIGSGM-IGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGAND-YAAIEGADVVIVT   82 (324)
T ss_dssp             -CCCEEEEECCSH-HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESS-GGGGTTCSEEEEC
T ss_pred             CcCCEEEEECCCH-HHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCC-HHHHCCCCEEEEc
Confidence            3567999999976 59999999999987 888887542                          12 3788999999999


Q ss_pred             cCCC
Q 024116          187 AGVA  190 (272)
Q Consensus       187 ~g~p  190 (272)
                      +|.|
T Consensus        83 ag~p   86 (324)
T 3gvi_A           83 AGVP   86 (324)
T ss_dssp             CSCC
T ss_pred             cCcC
Confidence            9965

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=96.10  E-value=0.011  Score=52.27  Aligned_cols=37  Identities=19%  Similarity=0.174  Sum_probs=33.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      .+++||.++|.|+++-+|+.++..|+++|++|.++.+
T Consensus        25 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~   61 (280)
T 4da9_A           25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGI   61 (280)
T ss_dssp             SCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             hccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeC
Confidence            4578999999999888899999999999999999875

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.10  E-value=0.0044  Score=54.58  Aligned_cols=38  Identities=24%  Similarity=0.203  Sum_probs=34.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus        22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~   59 (271)
T 4ibo_A           22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTD   59 (271)
T ss_dssp             GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999998888999999999999999998765

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=96.10  E-value=0.0067  Score=52.50  Aligned_cols=37  Identities=19%  Similarity=0.232  Sum_probs=32.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .-||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~   56 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRE   56 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3489999999988889999999999999999998875

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.09  E-value=0.008  Score=54.30  Aligned_cols=74  Identities=20%  Similarity=0.299  Sum_probs=51.1

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------------CCHhhhcCCCcEE
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------------KNPEQITSEADIV  183 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t---------------------------~~l~~~l~~ADIV  183 (272)
                      +++...+++.|||+|.+ |.+++..|++.|.+|+++ ++.                           .++ +.+..+|+|
T Consensus        14 ~~~~~~~kI~IiGaGa~-G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v   90 (318)
T 3hwr_A           14 NLYFQGMKVAIMGAGAV-GCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDP-SAVQGADLV   90 (318)
T ss_dssp             ------CEEEEESCSHH-HHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCG-GGGTTCSEE
T ss_pred             hhhccCCcEEEECcCHH-HHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCH-HHcCCCCEE
Confidence            34567789999999885 999999999999999998 442                           122 335789999


Q ss_pred             EEecCCCcc---cc--CCCcCCCcEEEEe
Q 024116          184 IAAAGVANL---VR--GSWLKPGAVVLDV  207 (272)
Q Consensus       184 Isa~g~p~~---i~--~~~vk~g~vviDi  207 (272)
                      |.++....+   +.  ...++++++|+.+
T Consensus        91 ilavk~~~~~~~l~~l~~~l~~~~~iv~~  119 (318)
T 3hwr_A           91 LFCVKSTDTQSAALAMKPALAKSALVLSL  119 (318)
T ss_dssp             EECCCGGGHHHHHHHHTTTSCTTCEEEEE
T ss_pred             EEEcccccHHHHHHHHHHhcCCCCEEEEe
Confidence            999986542   11  2356777777776

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.06  E-value=0.0084  Score=53.15  Aligned_cols=55  Identities=11%  Similarity=0.143  Sum_probs=43.4

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------------CHhhhcCCCcEEEEecCCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------------NPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------------------~l~~~l~~ADIVIsa~g~p  190 (272)
                      .++|+|.|++|.+|+.++..|+++|.+|+++.|+..                         ++.+.++.+|+||.+++..
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~~   90 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAFP   90 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCchh
Confidence            368999999888899999999999999999887642                         1235567788888777643

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.06  E-value=0.0058  Score=51.76  Aligned_cols=55  Identities=24%  Similarity=0.324  Sum_probs=42.7

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------CHhhhcC------CCcEEEEecCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------NPEQITS------EADIVIAAAGV  189 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~---------------~l~~~l~------~ADIVIsa~g~  189 (272)
                      .+|+++|.|+++-+|+.++..|+++|++|+++.|+..               ++.+.++      ..|++|...|.
T Consensus         1 ~~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~ag~   76 (242)
T 1uay_A            1 MERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAGV   76 (242)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSSSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCccccceEEEeCCCCCHHHHHHHHHHHHhhCCceEEEEcccc
Confidence            3789999999988999999999999999999887642               1223333      56899987774

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.06  E-value=0.0056  Score=54.02  Aligned_cols=39  Identities=23%  Similarity=0.364  Sum_probs=35.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus        28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   66 (276)
T 3r1i_A           28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHS   66 (276)
T ss_dssp             GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468999999999988889999999999999999998764

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=96.05  E-value=0.043  Score=50.39  Aligned_cols=148  Identities=11%  Similarity=0.015  Sum_probs=97.9

Q ss_pred             chHHHHHHHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCc
Q 024116           21 DSQTYVRNKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG   97 (272)
Q Consensus        21 ~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg   97 (272)
                      .|..=--+=..++.++|.++.+..|..+.   .-+-+.+.++-|+.-  +|+|.+--|-..  ....+-++.       .
T Consensus        54 ~STRTR~SFE~A~~~LGg~~i~~~l~~~ss~~kgEsl~DTarvls~~--~D~iviR~~~~~--~~~~lA~~~-------~  122 (328)
T 3grf_A           54 PSLRTRVSLETAMTRLGGHAIYYELGANSNVGGKETVQDTAEVFSRM--VDICTARLATKE--MMREMAQHA-------S  122 (328)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEEEC----------CHHHHHHHHTTT--CSEEEEECSSHH--HHHHHHHHC-------S
T ss_pred             CCchHHHHHHHHHHHCCCeEEccccCccccCCCCCCHHHHHHHHHhh--CCEEEEecCChh--HHHHHHHhC-------C
Confidence            34444445678899999999985564321   134477778777774  789998766221  222222222       1


Q ss_pred             cccccccccccCCCCCccccCCHHH-HHHHHHHhC------CCCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC
Q 024116           98 FHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSG------VEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus        98 ~~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~------~~l~gk~v~ViG~g-~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +-.+|.     +  .+.+.||=+.+ ++.+.++.|      .+++|++++++|-+ ..|.+.++..|...|++|+++.-.
T Consensus       123 vPVINa-----g--~~~~HPtQaLaDl~Ti~e~~g~~~~~~~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~  195 (328)
T 3grf_A          123 VPCINA-----L--DDFGHPLQMVCDFMTIKEKFTAAGEFSNGFKGIKFAYCGDSMNNVTYDLMRGCALLGMECHVCCPD  195 (328)
T ss_dssp             SCEEES-----S--CSSCCHHHHHHHHHHHHHHHHHTTCCTTTGGGCCEEEESCCSSHHHHHHHHHHHHHTCEEEEECCS
T ss_pred             CCEEeC-----C--CCCCCcHHHHHHHHHHHHHhCCccccccccCCcEEEEeCCCCcchHHHHHHHHHHcCCEEEEECCh
Confidence            334554     2  22467998888 566666665      27999999999987 668999999999999999998532


Q ss_pred             C-----------------------------CCHhhhcCCCcEEEEe
Q 024116          170 T-----------------------------KNPEQITSEADIVIAA  186 (272)
Q Consensus       170 t-----------------------------~~l~~~l~~ADIVIsa  186 (272)
                      .                             .++.+.+++||+|.+.
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvytd  241 (328)
T 3grf_A          196 HKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDVVYTD  241 (328)
T ss_dssp             SGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCSEEEEC
T ss_pred             HhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCCEEEec
Confidence            1                             3556788999999874

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=96.05  E-value=0.0029  Score=57.57  Aligned_cols=53  Identities=26%  Similarity=0.308  Sum_probs=45.6

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeC-CC-CCHhhhcCCCcEEEEecCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA-LT-KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~-~t-~~l~~~l~~ADIVIsa~g~  189 (272)
                      ++|+|.|++|.+|+.++..|+++|. +|+.+++ .. .++.+.++++|+||...+.
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~d~~~l~~~~~~~d~Vih~a~~   56 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALLKADFIVHLAGV   56 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTCCHHHHHHHHHHCSEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHhccCCEEEECCcC
Confidence            4799999999999999999999998 9999988 33 3567788899999988774

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=96.04  E-value=0.0045  Score=54.57  Aligned_cols=37  Identities=22%  Similarity=0.162  Sum_probs=31.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++.||.++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   61 (272)
T 4dyv_A           25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRR   61 (272)
T ss_dssp             ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4689999999998888999999999999999999876

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=96.04  E-value=0.016  Score=49.22  Aligned_cols=35  Identities=23%  Similarity=0.163  Sum_probs=32.1

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~   35 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARDGYALALGARS   35 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            47899999998888999999999999999998876

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=96.03  E-value=0.0087  Score=52.52  Aligned_cols=40  Identities=28%  Similarity=0.372  Sum_probs=36.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK  171 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~  171 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+..
T Consensus         2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   41 (274)
T 3e03_A            2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAV   41 (274)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCS
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccch
Confidence            4689999999999888999999999999999999988753

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=96.03  E-value=0.012  Score=55.87  Aligned_cols=53  Identities=23%  Similarity=0.308  Sum_probs=45.0

Q ss_pred             cccCCHHHHHHH----HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE-EEeC
Q 024116          115 FIPCTPKGCIEL----LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS-IVHA  168 (272)
Q Consensus       115 ~~p~Ta~g~~~~----l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~-v~~~  168 (272)
                      -.++|++|++..    +++.+.+++||+|+|.|.|+ ||..++.+|.+.|++|+ ++++
T Consensus       193 r~~aTg~Gv~~~~~~~~~~~g~~l~gk~vaVqG~Gn-VG~~~a~~L~~~GakVVavsD~  250 (419)
T 3aoe_E          193 RDDAAGLGALLVLEALAKRRGLDLRGARVVVQGLGQ-VGAAVALHAERLGMRVVAVATS  250 (419)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEEET
T ss_pred             CccchHHHHHHHHHHHHHhcCCCccCCEEEEECcCH-HHHHHHHHHHHCCCEEEEEEcC
Confidence            347899987655    55688999999999999988 59999999999999877 7776

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=96.03  E-value=0.0042  Score=52.86  Aligned_cols=38  Identities=26%  Similarity=0.266  Sum_probs=34.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~   40 (244)
T 1cyd_A            3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRT   40 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999998889999999999999999998875

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.03  E-value=0.0065  Score=53.39  Aligned_cols=55  Identities=13%  Similarity=0.170  Sum_probs=43.5

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------------------CHhhhcCCCcEEEE
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------------------NPEQITSEADIVIA  185 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~------------------------------~l~~~l~~ADIVIs  185 (272)
                      .++|+|.|++|.+|+.++..|+++|.+|+++.|...                              ++.+.++.+|+||+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            578999999888899999999999999998877521                              13355667888888


Q ss_pred             ecCCC
Q 024116          186 AAGVA  190 (272)
Q Consensus       186 a~g~p  190 (272)
                      ++|..
T Consensus        84 ~a~~~   88 (308)
T 1qyc_A           84 TVGSL   88 (308)
T ss_dssp             CCCGG
T ss_pred             CCcch
Confidence            77743

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=96.03  E-value=0.013  Score=51.51  Aligned_cols=53  Identities=21%  Similarity=0.135  Sum_probs=41.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC--------------------HhhhcCCCcEEEEecCCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN--------------------PEQITSEADIVIAAAGVA  190 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~--------------------l~~~l~~ADIVIsa~g~p  190 (272)
                      ++|+|.|++|.+|+.++..|+++|++|+++.|....                    +.+.++. |+||...+.+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-d~vih~A~~~   73 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELHVRDLKDYSWGAGIKG-DVVFHFAANP   73 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGSCTTSEEECCCTTSTTTTTTCCC-SEEEECCSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhcCCCceEEECccccHHHHhhcCC-CEEEECCCCC
Confidence            579999998889999999999999999998764321                    2333444 8999877743

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=96.02  E-value=0.0086  Score=51.72  Aligned_cols=39  Identities=10%  Similarity=-0.043  Sum_probs=33.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCC---CEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHH---ATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~g---a~V~v~~~~t  170 (272)
                      .++++|+++|.|+++-+|+.++..|+++|   ++|+++.|+.
T Consensus        17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~   58 (267)
T 1sny_A           17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNR   58 (267)
T ss_dssp             ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCT
T ss_pred             cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecCh
Confidence            35789999999999999999999999999   8999998764

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=96.01  E-value=0.0043  Score=53.81  Aligned_cols=37  Identities=19%  Similarity=0.305  Sum_probs=33.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   38 (254)
T 1hdc_A            2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVL   38 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999998888999999999999999999875

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=96.01  E-value=0.057  Score=50.26  Aligned_cols=169  Identities=16%  Similarity=0.101  Sum_probs=106.7

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCC-CC-CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCccc
Q 024116           22 SQTYVRNKIKACEEVGIKSIVTEFAD-GC-TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFH   99 (272)
Q Consensus        22 s~~Y~~~~~~~~~~~Gi~~~~~~l~~-~~-~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg~~   99 (272)
                      |..=--+=..++.++|.++.+..-.. .. ..+-+.+.++-|+.-  +|+|.+--|-.      ..+..+..  -. ++-
T Consensus        82 STRTR~SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~--~D~IviR~~~~------~~~~~lA~--~s-~vP  150 (365)
T 4amu_A           82 STRTRCAFEVAASDLGAGVTYIGPSGSNMGKKESIEDTAKVLGRF--YDGIEFRGFAQ------SDVDALVK--YS-GVP  150 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEECHHHHCCSSSSCHHHHHHHHHHH--CSEEEEECSCH------HHHHHHHH--HH-CSC
T ss_pred             CchHHHHHHHHHHhCCCEEEEcCCccccCCCCcCHHHHHHHHHhh--CcEEEEecCCh------hHHHHHHH--hC-CCC
Confidence            43333455678999999999773210 00 123355555555553  68898865522      22222211  11 234


Q ss_pred             cccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC--------
Q 024116          100 PLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL--------  169 (272)
Q Consensus       100 ~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~g-~~vG~~la~~L~~~ga~V~v~~~~--------  169 (272)
                      .+|.|       .+.+.||=+.+ ++.+.++.| .++|++++++|-+ ..|++.++..+...|++|+++.-.        
T Consensus       151 VINa~-------~~~~HPtQaLaDl~Ti~E~~G-~l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~  222 (365)
T 4amu_A          151 VWNGL-------TDDEHPTQIIADFMTMKEKFG-NLKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDK  222 (365)
T ss_dssp             EEEEE-------CSSCCHHHHHHHHHHHHHHHS-SCTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCH
T ss_pred             EEeCC-------CCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcH
Confidence            45642       23467998888 556655555 5999999999987 557999999999999999998532        


Q ss_pred             -------------------CCCHhhhcCCCcEEEEec----CCC------------cc-ccCCCc---CCCcEEEEeee
Q 024116          170 -------------------TKNPEQITSEADIVIAAA----GVA------------NL-VRGSWL---KPGAVVLDVGT  209 (272)
Q Consensus       170 -------------------t~~l~~~l~~ADIVIsa~----g~p------------~~-i~~~~v---k~g~vviDig~  209 (272)
                                         +.++.+.++.||+|.+-+    |.+            .+ ++.+.+   ++++++.=+..
T Consensus       223 ~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDVVytd~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcLP  301 (365)
T 4amu_A          223 NVLAKCIELFKRNGGSLRFSTDKILAAQDADVIYTDVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCLP  301 (365)
T ss_dssp             HHHHHHHHHHHHHSCEEEEESCHHHHTTTCSEEEECCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECSC
T ss_pred             HHHHHHHHHHHHcCCEEEEECCHHHHhcCCCEEEecccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCC
Confidence                               135678899999999743    321            12 555544   56777776653

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=96.01  E-value=0.005  Score=54.43  Aligned_cols=38  Identities=24%  Similarity=0.216  Sum_probs=35.0

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~   49 (291)
T 3rd5_A           12 PSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRD   49 (291)
T ss_dssp             CCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECC
Confidence            46899999999998888999999999999999999876

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=96.01  E-value=0.0092  Score=53.79  Aligned_cols=57  Identities=18%  Similarity=0.302  Sum_probs=41.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCCCC--------------------HhhhcC-----CCcEEEEe
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTKN--------------------PEQITS-----EADIVIAA  186 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t~~--------------------l~~~l~-----~ADIVIsa  186 (272)
                      ++++++|+|.|++|.+|+.++..|+++| .+|+++.|....                    +.+.++     ..|+||..
T Consensus        43 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~Vih~  122 (357)
T 2x6t_A           43 GIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHE  122 (357)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGGGGGTTTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEEC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcchhhcccCceEeeecCcHHHHHHHHhhcccCCCCEEEEC
Confidence            3578999999998889999999999999 899998775321                    123344     58999988


Q ss_pred             cCC
Q 024116          187 AGV  189 (272)
Q Consensus       187 ~g~  189 (272)
                      .|.
T Consensus       123 A~~  125 (357)
T 2x6t_A          123 GAC  125 (357)
T ss_dssp             CSC
T ss_pred             Ccc
Confidence            774

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=96.00  E-value=0.0036  Score=55.99  Aligned_cols=38  Identities=24%  Similarity=0.225  Sum_probs=34.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ..|+||.++|-|++.=+|++++..|+++|++|.++.|+
T Consensus        25 ~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~   62 (273)
T 4fgs_A           25 QRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRR   62 (273)
T ss_dssp             CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             chhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            35899999999998878999999999999999999886

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=95.99  E-value=0.0057  Score=51.90  Aligned_cols=36  Identities=22%  Similarity=0.251  Sum_probs=32.7

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+|+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~   39 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDE   39 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            578999999999999999999999999999998763

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=95.99  E-value=0.0062  Score=53.71  Aligned_cols=39  Identities=23%  Similarity=0.220  Sum_probs=35.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   67 (275)
T 4imr_A           29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKP   67 (275)
T ss_dssp             HCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            468999999999988889999999999999999998864

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=95.98  E-value=0.0067  Score=53.36  Aligned_cols=38  Identities=26%  Similarity=0.204  Sum_probs=34.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||.++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        24 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   61 (270)
T 3ftp_A           24 KTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATT   61 (270)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999998888999999999999999999876

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=95.98  E-value=0.014  Score=53.35  Aligned_cols=94  Identities=11%  Similarity=0.065  Sum_probs=59.9

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC-----------------------
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN-----------------------  172 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~-----------------------  172 (272)
                      +||.+..++..+.+..---.|.+|+|+|+++.+|..+++++...|++|+++.+..++                       
T Consensus       148 l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~  227 (357)
T 1zsy_A          148 LGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELR  227 (357)
T ss_dssp             TTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHH
T ss_pred             hcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCcch
Confidence            345455555566554333479999999996667999999999999976655432111                       


Q ss_pred             ---HhhhcC---CCcEEEEecCCCccc-cCCCcCCCcEEEEeee
Q 024116          173 ---PEQITS---EADIVIAAAGVANLV-RGSWLKPGAVVLDVGT  209 (272)
Q Consensus       173 ---l~~~l~---~ADIVIsa~g~p~~i-~~~~vk~g~vviDig~  209 (272)
                         +.+.+.   .+|+||.++|.+... .-+.++++-.++.+|.
T Consensus       228 ~~~~~~~~~~~~~~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~  271 (357)
T 1zsy_A          228 RPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGG  271 (357)
T ss_dssp             SGGGGGTTSSSCCCSEEEESSCHHHHHHHHTTSCTTCEEEECCC
T ss_pred             HHHHHHHHhCCCCceEEEECCCcHHHHHHHHhhCCCCEEEEEec
Confidence               111122   378888888865432 2346677767777764

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=95.98  E-value=0.0035  Score=57.38  Aligned_cols=89  Identities=25%  Similarity=0.217  Sum_probs=58.3

Q ss_pred             HHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHh----hhc
Q 024116          121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPE----QIT  177 (272)
Q Consensus       121 ~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------~~l~----~~l  177 (272)
                      ..++..|.+..---.|++|+|.|+++.+|..+++++...|++|+++.++.                   .+..    +..
T Consensus       156 ~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~  235 (351)
T 1yb5_A          156 FTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYV  235 (351)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHc
Confidence            33445554332223699999999955579999999999999998887642                   1111    112


Q ss_pred             --CCCcEEEEecCCCccc-cCCCcCCCcEEEEeee
Q 024116          178 --SEADIVIAAAGVANLV-RGSWLKPGAVVLDVGT  209 (272)
Q Consensus       178 --~~ADIVIsa~g~p~~i-~~~~vk~g~vviDig~  209 (272)
                        +..|+||.++|.+.+- .-+.++++-.++.+|.
T Consensus       236 ~~~~~D~vi~~~G~~~~~~~~~~l~~~G~iv~~g~  270 (351)
T 1yb5_A          236 GEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGS  270 (351)
T ss_dssp             CTTCEEEEEESCHHHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCcEEEEECCChHHHHHHHHhccCCCEEEEEec
Confidence              1579999888865321 1235677667777774

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=95.98  E-value=0.014  Score=49.64  Aligned_cols=53  Identities=21%  Similarity=0.213  Sum_probs=42.7

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC--------------HhhhcC----CCcEEEEecCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN--------------PEQITS----EADIVIAAAGV  189 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~--------------l~~~l~----~ADIVIsa~g~  189 (272)
                      |+++|.|+++-+|+.++..|+++|++|+++.|+...              +++.++    ..|+||...|.
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~   72 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCAGV   72 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECCCC
Confidence            579999998889999999999999999999886431              223333    78999988874

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=95.97  E-value=0.0096  Score=52.97  Aligned_cols=37  Identities=14%  Similarity=0.186  Sum_probs=33.2

Q ss_pred             CCccceEEEEcCCcc--cHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNI--VGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~--vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++.  +|+.++..|+++|++|.++.|+
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~   66 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQG   66 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECS
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCC
Confidence            589999999998754  7999999999999999998775

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.97  E-value=0.01  Score=51.61  Aligned_cols=53  Identities=9%  Similarity=-0.007  Sum_probs=42.0

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhhh----------------cCCCcEEEEecCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQI----------------TSEADIVIAAAGV  189 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l~~~----------------l~~ADIVIsa~g~  189 (272)
                      .++|+|.|+ |.+|+.++..|.++|.+|+++.|+.......                ++.+|+||.+.+.
T Consensus         5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~d~vi~~a~~   73 (286)
T 3ius_A            5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSLDGVTHLLISTAP   73 (286)
T ss_dssp             CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCCCTTCCEEEECCCC
T ss_pred             cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccccCCCCEEEECCCc
Confidence            378999998 6679999999999999999998875322110                6778999987763

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=95.97  E-value=0.0082  Score=52.48  Aligned_cols=38  Identities=29%  Similarity=0.276  Sum_probs=33.8

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.++
T Consensus        14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~   51 (270)
T 3is3_A           14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYAN   51 (270)
T ss_dssp             TCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            35899999999998888999999999999999987553

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=95.96  E-value=0.0087  Score=54.90  Aligned_cols=57  Identities=18%  Similarity=0.305  Sum_probs=45.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC-----------------------CCHhhhcCCCcEEEEec
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-----------------------KNPEQITSEADIVIAAA  187 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t-----------------------~~l~~~l~~ADIVIsa~  187 (272)
                      +-.++||.|+|+|. +|.+++..|+..+.  ++.+++...                       .+.++.+++||+||.+.
T Consensus         6 ~~~~~kV~ViGaG~-vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~a   84 (326)
T 3vku_A            6 DKDHQKVILVGDGA-VGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITA   84 (326)
T ss_dssp             -CCCCEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECC
T ss_pred             cCCCCEEEEECCCH-HHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECC
Confidence            45788999999977 59999999998885  888887531                       12257799999999999


Q ss_pred             CCC
Q 024116          188 GVA  190 (272)
Q Consensus       188 g~p  190 (272)
                      |.|
T Consensus        85 g~~   87 (326)
T 3vku_A           85 GAP   87 (326)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            865

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.95  E-value=0.013  Score=53.21  Aligned_cols=123  Identities=16%  Similarity=0.087  Sum_probs=70.4

Q ss_pred             cceEEEEcCCcccHHH-HHHHHHhCCCEEEEEeCCCC-CHhhhcCCCcEEEEecCCCccccCCCcC---CCcEEEEeeeC
Q 024116          136 GKNAVVIGRSNIVGLP-TSLLLQRHHATVSIVHALTK-NPEQITSEADIVIAAAGVANLVRGSWLK---PGAVVLDVGTC  210 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~-la~~L~~~ga~V~v~~~~t~-~l~~~l~~ADIVIsa~g~p~~i~~~~vk---~g~vviDig~~  210 (272)
                      .|++.|||.|++ |.+ +|.+|.++|++|++++++.. ...+.+++..+-+. .|.    +++.+.   ...+|+--|++
T Consensus         4 ~~~i~~iGiGg~-Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~-~g~----~~~~l~~~~~d~vV~Spgi~   77 (326)
T 3eag_A            4 MKHIHIIGIGGT-FMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVY-EGF----DAAQLDEFKADVYVIGNVAK   77 (326)
T ss_dssp             CCEEEEESCCSH-HHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEE-ESC----CGGGGGSCCCSEEEECTTCC
T ss_pred             CcEEEEEEECHH-HHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEE-CCC----CHHHcCCCCCCEEEECCCcC
Confidence            589999999997 995 89999999999999998652 23333433333222 121    112221   23445444554


Q ss_pred             CCCCCCCCCCCCCceEecccchhh--hhhhceEeccCCCcccHHHHHHHHHHHHHHH
Q 024116          211 PVDVSVDPSCEYGYRLMGDVCYEE--AMRLASVITPVPGGVGPMTVAMLLSNTLDSA  265 (272)
Q Consensus       211 ~~~~~~~~~~~~~~k~~Gdvd~~~--~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~  265 (272)
                      +...........+-++.+++++-.  +.+ ...+--|-|--|.=|+..|+.++++..
T Consensus        78 ~~~p~~~~a~~~gi~v~~~~e~~~~~~~~-~~~~IaVTGTnGKTTTt~ll~~iL~~~  133 (326)
T 3eag_A           78 RGMDVVEAILNLGLPYISGPQWLSENVLH-HHWVLGVAGTHGKTTTASMLAWVLEYA  133 (326)
T ss_dssp             TTCHHHHHHHHTTCCEEEHHHHHHHHTGG-GSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHcCCcEEeHHHHHHHHHhc-CCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence            431000000001235777776422  111 112223668889999999999998764

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=95.94  E-value=0.0098  Score=53.11  Aligned_cols=58  Identities=16%  Similarity=0.381  Sum_probs=46.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCC-------CEEEEEeCCCC---------------------CHhhhc-CCCcE
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHH-------ATVSIVHALTK---------------------NPEQIT-SEADI  182 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~g-------a~V~v~~~~t~---------------------~l~~~l-~~ADI  182 (272)
                      ..++|++|+|.|+++.+|+.++..|+++|       ++|+++.|...                     .+.+.+ ...|+
T Consensus        10 ~~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~   89 (342)
T 2hrz_A           10 LYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSAPGEAEKLVEARPDV   89 (342)
T ss_dssp             SCCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCTTCCSEEEEEECCTTSTTHHHHHHHTCCSE
T ss_pred             CCccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCccccccCCceeEEEcCCCCHHHHHHHHhcCCCE
Confidence            45789999999998889999999999999       78998876531                     123445 47899


Q ss_pred             EEEecCC
Q 024116          183 VIAAAGV  189 (272)
Q Consensus       183 VIsa~g~  189 (272)
                      ||...|.
T Consensus        90 vih~A~~   96 (342)
T 2hrz_A           90 IFHLAAI   96 (342)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9988774

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=95.94  E-value=0.0032  Score=56.46  Aligned_cols=90  Identities=22%  Similarity=0.210  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHhCCCCc-cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhhh----------------c-----
Q 024116          120 PKGCIELLIRSGVEIM-GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQI----------------T-----  177 (272)
Q Consensus       120 a~g~~~~l~~~~~~l~-gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l~~~----------------l-----  177 (272)
                      ++..+..+++.++... |+ |+|.|+++.+|..+++++...|++|+.+.++...++..                +     
T Consensus       131 a~~al~~~~~~~~~~~~g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~  209 (324)
T 3nx4_A          131 AMLCVMALEDAGIRPQDGE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEK  209 (324)
T ss_dssp             HHHHHHHHHHTTCCGGGCC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCC
T ss_pred             HHHHHHHhhhcccCCCCCe-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcC
Confidence            3434444455544433 45 99999966679999999999999998887654222100                0     


Q ss_pred             CCCcEEEEecCCCcc-ccCCCcCCCcEEEEeeeC
Q 024116          178 SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       178 ~~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~~  210 (272)
                      ...|+||.++|.+.+ -.-+.++++-.++.+|..
T Consensus       210 ~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~  243 (324)
T 3nx4_A          210 QLWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLA  243 (324)
T ss_dssp             CCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCT
T ss_pred             CCccEEEECCCcHHHHHHHHHHhcCCEEEEEecC
Confidence            235777777775522 122356777777777754

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=95.94  E-value=0.0073  Score=53.12  Aligned_cols=36  Identities=19%  Similarity=0.142  Sum_probs=33.0

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +.||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   37 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARR   37 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECC
Confidence            578999999998888999999999999999999876

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=95.92  E-value=0.0049  Score=52.56  Aligned_cols=38  Identities=24%  Similarity=0.246  Sum_probs=34.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~   41 (244)
T 3d3w_A            4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999999988889999999999999999988763

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=95.92  E-value=0.0089  Score=52.89  Aligned_cols=38  Identities=21%  Similarity=0.228  Sum_probs=33.0

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||.++|.|+++-+|++++..|+++|++|.++.|+
T Consensus        24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   61 (283)
T 3v8b_A           24 MNQPSPVALITGAGSGIGRATALALAADGVTVGALGRT   61 (283)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999998888999999999999999999876

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=95.91  E-value=0.0076  Score=52.37  Aligned_cols=69  Identities=16%  Similarity=0.187  Sum_probs=50.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC--C------------CCHhhhcCCCcEEEEecCCCcc---cc--CCCc
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL--T------------KNPEQITSEADIVIAAAGVANL---VR--GSWL  198 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~--t------------~~l~~~l~~ADIVIsa~g~p~~---i~--~~~v  198 (272)
                      +|.|||.|.+ |.+++..|.+.|.+|+++++.  .            .++.+.++++|+||.+++.+..   +.  .+.+
T Consensus         2 ~I~iIG~G~m-G~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~aDvvi~~v~~~~~~~~~~~~~~~~   80 (264)
T 1i36_A            2 RVGFIGFGEV-AQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARRAGRHV   80 (264)
T ss_dssp             EEEEESCSHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHHHHHHHHTTC
T ss_pred             eEEEEechHH-HHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCcCCHHHHHhcCCEEEEECCCHHHHHHHHHHHHhc
Confidence            6899999886 999999999999999997662  1            1344567899999999986531   21  1234


Q ss_pred             CCCcEEEEeee
Q 024116          199 KPGAVVLDVGT  209 (272)
Q Consensus       199 k~g~vviDig~  209 (272)
                      ++  +++|+..
T Consensus        81 ~~--~vi~~s~   89 (264)
T 1i36_A           81 RG--IYVDINN   89 (264)
T ss_dssp             CS--EEEECSC
T ss_pred             Cc--EEEEccC
Confidence            44  8888853

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.90  E-value=0.011  Score=54.11  Aligned_cols=93  Identities=19%  Similarity=0.192  Sum_probs=60.5

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC---------------------CHh
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK---------------------NPE  174 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t~---------------------~l~  174 (272)
                      ||.....+..+.+..---.|++|+|+|+|+ +|..+++++...|+ +|+.+.++..                     ++.
T Consensus       174 ~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~-vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~  252 (374)
T 1cdo_A          174 GCGVSTGFGAAVNTAKVEPGSTCAVFGLGA-VGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPIS  252 (374)
T ss_dssp             GTHHHHHHHHHHTTTCCCTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHH
T ss_pred             ccHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHH
Confidence            443333444443322224699999999866 69999999999998 7888764321                     122


Q ss_pred             hhcC-----CCcEEEEecCCCcccc--CCCcCCC-cEEEEeeeC
Q 024116          175 QITS-----EADIVIAAAGVANLVR--GSWLKPG-AVVLDVGTC  210 (272)
Q Consensus       175 ~~l~-----~ADIVIsa~g~p~~i~--~~~vk~g-~vviDig~~  210 (272)
                      +.++     .+|+||.++|.+..+.  -+.++++ -.++.+|..
T Consensus       253 ~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~  296 (374)
T 1cdo_A          253 QVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWT  296 (374)
T ss_dssp             HHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             HHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCC
Confidence            2222     4799999998754432  2467877 777888864

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=95.90  E-value=0.0088  Score=49.55  Aligned_cols=55  Identities=11%  Similarity=0.045  Sum_probs=42.1

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCCC-----------CHh--hhcCC--CcEEEEecCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALTK-----------NPE--QITSE--ADIVIAAAGV  189 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t~-----------~l~--~~l~~--ADIVIsa~g~  189 (272)
                      .+++++|.|+++.+|+.++..|+++|.  +|+++.|+..           ++.  +.+.+  .|+||.+.|.
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~~d~vi~~a~~   75 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGT   75 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSCCSEEEECCCC
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcccCCCceEEeccccCHHHHHHhhhcEEEECeee
Confidence            478999999988899999999999998  9998877642           111  11222  7999988774

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=95.90  E-value=0.0082  Score=51.62  Aligned_cols=38  Identities=18%  Similarity=0.285  Sum_probs=34.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus        11 ~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~   48 (265)
T 1h5q_A           11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA   48 (265)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcc
Confidence            57899999999998899999999999999999998853

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=95.90  E-value=0.0052  Score=53.55  Aligned_cols=53  Identities=13%  Similarity=0.183  Sum_probs=43.8

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC------HhhhcC--CCcEEEEecCCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN------PEQITS--EADIVIAAAGVA  190 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~------l~~~l~--~ADIVIsa~g~p  190 (272)
                      +|+|.|++|.+|+.++..|.++|.+|+++.|..-+      +.+.++  ..|+||...+..
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~~~~d~vi~~a~~~   67 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHCAAYT   67 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHhcCCCEEEECCccc
Confidence            89999998889999999999999999999886533      345555  589999887743

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=95.90  E-value=0.0071  Score=56.68  Aligned_cols=69  Identities=29%  Similarity=0.354  Sum_probs=51.5

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------------------------CCHhhhcCCCcEEEE
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------------------KNPEQITSEADIVIA  185 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------------------------~~l~~~l~~ADIVIs  185 (272)
                      ++.|||.|. +|.+++..|++ |.+|++++++.                                .++.+.+++||+||.
T Consensus         2 kI~VIG~G~-vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii   79 (402)
T 1dlj_A            2 KIAVAGSGY-VGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (402)
T ss_dssp             EEEEECCSH-HHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             EEEEECCCH-HHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence            689999987 59999999998 99999998752                                123345678999999


Q ss_pred             ecCCCc-----------c------ccCCCcCCCcEEEEeeeC
Q 024116          186 AAGVAN-----------L------VRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       186 a~g~p~-----------~------i~~~~vk~g~vviDig~~  210 (272)
                      +++.|.           +      +. . ++++.+||+...+
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~~~i~-~-l~~~~iVV~~ST~  119 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVIKEVL-S-VNSHATLIIKSTI  119 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHHHHHH-H-HCSSCEEEECSCC
T ss_pred             ecCCCcccCCCCccHHHHHHHHHHHH-h-hCCCCEEEEeCCC
Confidence            998762           1      11 2 6788888884444

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=95.90  E-value=0.014  Score=50.08  Aligned_cols=54  Identities=15%  Similarity=0.197  Sum_probs=42.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC--------------HhhhcCC----CcEEEEecCCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN--------------PEQITSE----ADIVIAAAGVA  190 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~--------------l~~~l~~----ADIVIsa~g~p  190 (272)
                      |+++|.|+++-+|+.++..|+++|++|+++.|+...              +++.+++    -|++|+..|..
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~   73 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLG   73 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHTTCTTCCSEEEECCCCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhccccccCCCCHHHHHHHHHHhCCCCCEEEECCCCC
Confidence            579999998889999999999999999999886431              2334444    49999888843

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=95.90  E-value=0.012  Score=52.41  Aligned_cols=38  Identities=21%  Similarity=0.252  Sum_probs=33.2

Q ss_pred             CCCccceEEEEcCCc--ccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSN--IVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~--~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++  -+|+.++..|+++|++|.++.|+
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~   65 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLS   65 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCC
Confidence            457899999999972  35999999999999999999876

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.90  E-value=0.0033  Score=57.09  Aligned_cols=92  Identities=16%  Similarity=0.181  Sum_probs=63.0

Q ss_pred             ccCCHHHHHHHHHHh-----CCCCccceEEEEcCCcccHHHHHHHHHhC--CCEEEEEeCCCC--------------CH-
Q 024116          116 IPCTPKGCIELLIRS-----GVEIMGKNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALTK--------------NP-  173 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~-----~~~l~gk~v~ViG~g~~vG~~la~~L~~~--ga~V~v~~~~t~--------------~l-  173 (272)
                      +||.....+..++..     ++  .|.+|+|+|+|+ +|..+++++...  |++|+++.++..              +. 
T Consensus       148 l~~~~~ta~~al~~~~~~~~~~--~g~~VlV~GaG~-vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~  224 (344)
T 2h6e_A          148 LADAGTTSMGAIRQALPFISKF--AEPVVIVNGIGG-LAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMK  224 (344)
T ss_dssp             GGTHHHHHHHHHHHHHHHHTTC--SSCEEEEECCSH-HHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHH
T ss_pred             hhhhhHHHHHHHHhhhhcccCC--CCCEEEEECCCH-HHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccc
Confidence            355444456666665     55  899999999965 699999999999  999888875421              10 


Q ss_pred             ------hhhc--CCCcEEEEecCCCccc--cCCCcCCCcEEEEeeeC
Q 024116          174 ------EQIT--SEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       174 ------~~~l--~~ADIVIsa~g~p~~i--~~~~vk~g~vviDig~~  210 (272)
                            .+..  +.+|+||.++|.+..+  --+.++++-.++.+|..
T Consensus       225 ~~~~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~  271 (344)
T 2h6e_A          225 DAESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQEGAIILVGME  271 (344)
T ss_dssp             HHHHHHHHHHTTCCEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCC
T ss_pred             cchHHHHHhhcCCCccEEEECCCChHHHHHHHHHhhcCCEEEEeCCC
Confidence                  1111  1579999999976432  22456777677788864

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=95.89  E-value=0.0061  Score=52.19  Aligned_cols=38  Identities=18%  Similarity=0.237  Sum_probs=34.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         7 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~   44 (254)
T 2wsb_A            7 FRLDGACAAVTGAGSGIGLEICRAFAASGARLILIDRE   44 (254)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999989999999999999999999875

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=95.89  E-value=0.005  Score=53.55  Aligned_cols=37  Identities=32%  Similarity=0.340  Sum_probs=34.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~   41 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRN   41 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999998888999999999999999999876

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=95.88  E-value=0.0053  Score=53.56  Aligned_cols=38  Identities=32%  Similarity=0.289  Sum_probs=34.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||.++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~   41 (265)
T 3lf2_A            4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARD   41 (265)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999999998888999999999999999999875

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=95.88  E-value=0.006  Score=58.59  Aligned_cols=72  Identities=13%  Similarity=0.235  Sum_probs=53.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------------CCHhhhcC---CCcEEEEecCCCc
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------KNPEQITS---EADIVIAAAGVAN  191 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t----------------------~~l~~~l~---~ADIVIsa~g~p~  191 (272)
                      .+|.|||.|.+ |.+++..|.+.|.+|++++|+.                      .++++.++   ++|+||.+++.+.
T Consensus         2 MkIgVIG~G~m-G~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~   80 (478)
T 1pgj_A            2 MDVGVVGLGVM-GANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGA   80 (478)
T ss_dssp             BSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSH
T ss_pred             CEEEEEChHHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChH
Confidence            36999999885 9999999999999999998752                      12334444   5999999998753


Q ss_pred             -c---cc--CCCcCCCcEEEEeee
Q 024116          192 -L---VR--GSWLKPGAVVLDVGT  209 (272)
Q Consensus       192 -~---i~--~~~vk~g~vviDig~  209 (272)
                       +   +.  ...++++.+|||++.
T Consensus        81 ~v~~vl~~l~~~l~~g~iIId~sn  104 (478)
T 1pgj_A           81 ATDSTIEQLKKVFEKGDILVDTGN  104 (478)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEECCC
T ss_pred             HHHHHHHHHHhhCCCCCEEEECCC
Confidence             1   21  124678899999863

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=95.87  E-value=0.015  Score=55.55  Aligned_cols=53  Identities=21%  Similarity=0.290  Sum_probs=44.6

Q ss_pred             ccCCHHHHHHH----HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE-EEeCC
Q 024116          116 IPCTPKGCIEL----LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS-IVHAL  169 (272)
Q Consensus       116 ~p~Ta~g~~~~----l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~-v~~~~  169 (272)
                      .++|++|++..    +++.+.+++|++|+|.|.|+ ||..++.+|.++|++|+ +++++
T Consensus       211 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaVqGfGn-VG~~~a~~L~e~GakvVavsD~~  268 (440)
T 3aog_A          211 RDATGRGVFITAAAAAEKIGLQVEGARVAIQGFGN-VGNAAARAFHDHGARVVAVQDHT  268 (440)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTCCSTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEECSS
T ss_pred             CcchHHHHHHHHHHHHHhcCCCccCCEEEEeccCH-HHHHHHHHHHHCCCEEEEEEcCC
Confidence            47899987654    56688999999999999988 59999999999999876 77663

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=95.87  E-value=0.012  Score=55.52  Aligned_cols=72  Identities=14%  Similarity=0.165  Sum_probs=53.5

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------------------------CCHhhhcCCCcEE
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------------KNPEQITSEADIV  183 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t----------------------------------~~l~~~l~~ADIV  183 (272)
                      ++.|||.|.+ |.+++..|++.|.+|++++++.                                  .++.+.+++||+|
T Consensus         2 kI~VIG~G~v-G~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv   80 (436)
T 1mv8_A            2 RISIFGLGYV-GAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (436)
T ss_dssp             EEEEECCSTT-HHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             EEEEECCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence            7899999885 9999999999999999997642                                  1233457789999


Q ss_pred             EEecCCCcc---------cc------CCCcCC---CcEEEEeeeC
Q 024116          184 IAAAGVANL---------VR------GSWLKP---GAVVLDVGTC  210 (272)
Q Consensus       184 Isa~g~p~~---------i~------~~~vk~---g~vviDig~~  210 (272)
                      |.+++.|.-         +.      ...+++   +.+|++....
T Consensus        81 iiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv  125 (436)
T 1mv8_A           81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTV  125 (436)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCC
T ss_pred             EEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCc
Confidence            999987641         11      123567   8888887433

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=95.86  E-value=0.0061  Score=54.44  Aligned_cols=39  Identities=15%  Similarity=0.299  Sum_probs=35.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus        37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   75 (293)
T 3rih_A           37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSP   75 (293)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            468999999999988889999999999999999998764

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=95.86  E-value=0.0055  Score=52.77  Aligned_cols=38  Identities=24%  Similarity=0.206  Sum_probs=34.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         4 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~   41 (264)
T 2pd6_A            4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDR   41 (264)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh
Confidence            57899999999998899999999999999999998764

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.86  E-value=0.0055  Score=52.84  Aligned_cols=37  Identities=16%  Similarity=0.226  Sum_probs=33.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         2 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~   38 (245)
T 1uls_A            2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIE   38 (245)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999998889999999999999999999875

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=95.86  E-value=0.018  Score=49.26  Aligned_cols=35  Identities=23%  Similarity=0.204  Sum_probs=32.2

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ||+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~   36 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNP   36 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            68999999998899999999999999999988764

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=95.86  E-value=0.0046  Score=54.24  Aligned_cols=39  Identities=23%  Similarity=0.217  Sum_probs=35.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus        26 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~   64 (281)
T 3ppi_A           26 KQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAA   64 (281)
T ss_dssp             GGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh
Confidence            467999999999988899999999999999999998764

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.86  E-value=0.0066  Score=55.89  Aligned_cols=87  Identities=29%  Similarity=0.413  Sum_probs=60.6

Q ss_pred             HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHhhhcC----
Q 024116          123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPEQITS----  178 (272)
Q Consensus       123 ~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t-------------------~~l~~~l~----  178 (272)
                      ++..++..++ -.|.+|+|.|+|+ +|..+++++...|+ +|+++.+..                   .++.+.++    
T Consensus       171 a~~~l~~~~~-~~g~~VlV~GaG~-vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~  248 (370)
T 4ej6_A          171 CLHGVDLSGI-KAGSTVAILGGGV-IGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVG  248 (370)
T ss_dssp             HHHHHHHHTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTS
T ss_pred             HHHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhh
Confidence            3444554443 3699999999965 69999999999999 788775431                   23333333    


Q ss_pred             ----CCcEEEEecCCCcccc--CCCcCCCcEEEEeeeCC
Q 024116          179 ----EADIVIAAAGVANLVR--GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       179 ----~ADIVIsa~g~p~~i~--~~~vk~g~vviDig~~~  211 (272)
                          .+|+||.++|.+..+.  -+.++++-.++.+|...
T Consensus       249 ~~~gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G~~~  287 (370)
T 4ej6_A          249 LVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLP  287 (370)
T ss_dssp             SSTTCEEEEEECSCCHHHHHHHHHHEEEEEEEEECSCCC
T ss_pred             ccCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEeccC
Confidence                3799999999765432  24577777788888654

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.85  E-value=0.011  Score=54.36  Aligned_cols=94  Identities=17%  Similarity=0.165  Sum_probs=60.8

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC---------------------CHh
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK---------------------NPE  174 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t~---------------------~l~  174 (272)
                      ||.....+..+.+..---.|++|+|+|+|+ +|..+++++...|+ +|+.+.++..                     ++.
T Consensus       173 ~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~-vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~  251 (374)
T 2jhf_A          173 GCGFSTGYGSAVKVAKVTQGSTCAVFGLGG-VGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQ  251 (374)
T ss_dssp             GTHHHHHHHHHHTTTCCCTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHH
T ss_pred             ccHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHH
Confidence            443333344443322223699999999866 69999999999998 7888765421                     122


Q ss_pred             hhcC-----CCcEEEEecCCCcccc--CCCcCCC-cEEEEeeeCC
Q 024116          175 QITS-----EADIVIAAAGVANLVR--GSWLKPG-AVVLDVGTCP  211 (272)
Q Consensus       175 ~~l~-----~ADIVIsa~g~p~~i~--~~~vk~g-~vviDig~~~  211 (272)
                      +.++     .+|+||.++|.+..+.  -+.++++ -.++.+|...
T Consensus       252 ~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~  296 (374)
T 2jhf_A          252 EVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPP  296 (374)
T ss_dssp             HHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCC
T ss_pred             HHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCC
Confidence            2221     4799999998754432  2457777 7788888643

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=95.85  E-value=0.013  Score=52.81  Aligned_cols=37  Identities=32%  Similarity=0.223  Sum_probs=33.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++++|+|.|++|.+|+.++..|+++|++|+++.|..
T Consensus         7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   43 (357)
T 1rkx_A            7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   43 (357)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            4689999999989899999999999999999998753

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=95.85  E-value=0.0055  Score=55.97  Aligned_cols=77  Identities=12%  Similarity=0.072  Sum_probs=54.6

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHh----hhc--CCCcEEEEecC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPE----QIT--SEADIVIAAAG  188 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------~~l~----~~l--~~ADIVIsa~g  188 (272)
                      -.|++|+|.|+++.+|..+++++...|++|+++.++.                   .+..    +..  ...|++|.++|
T Consensus       161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~G  240 (354)
T 2j8z_A          161 QAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIG  240 (354)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSC
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCCceEEEECCC
Confidence            3699999999655579999999999999998887542                   1111    112  24799999998


Q ss_pred             CCccc-cCCCcCCCcEEEEeeeC
Q 024116          189 VANLV-RGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       189 ~p~~i-~~~~vk~g~vviDig~~  210 (272)
                      .+.+- --+.++++-.++.+|..
T Consensus       241 ~~~~~~~~~~l~~~G~iv~~G~~  263 (354)
T 2j8z_A          241 GSYWEKNVNCLALDGRWVLYGLM  263 (354)
T ss_dssp             GGGHHHHHHHEEEEEEEEECCCT
T ss_pred             chHHHHHHHhccCCCEEEEEecc
Confidence            76331 12456777778888854

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.85  E-value=0.0086  Score=55.12  Aligned_cols=95  Identities=16%  Similarity=0.196  Sum_probs=62.5

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC---------------------CH
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK---------------------NP  173 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t~---------------------~l  173 (272)
                      +||.....+..+.+..---.|.+|+|+|+|. +|..+++++...|+ +|+++.++..                     ++
T Consensus       174 l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~-vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~  252 (378)
T 3uko_A          174 LGCGVPTGLGAVWNTAKVEPGSNVAIFGLGT-VGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPI  252 (378)
T ss_dssp             GGTHHHHHHHHHHTTTCCCTTCCEEEECCSH-HHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCH
T ss_pred             hhhhHHHHHHHHHhhcCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhH
Confidence            3444344444443332234699999999966 69999999999998 7888865431                     12


Q ss_pred             hhhcC-----CCcEEEEecCCCcccc--CCCcCCC-cEEEEeeeCC
Q 024116          174 EQITS-----EADIVIAAAGVANLVR--GSWLKPG-AVVLDVGTCP  211 (272)
Q Consensus       174 ~~~l~-----~ADIVIsa~g~p~~i~--~~~vk~g-~vviDig~~~  211 (272)
                      .+.++     .+|+||.++|.+..+.  -+.++++ -.++.+|...
T Consensus       253 ~~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~  298 (378)
T 3uko_A          253 QEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA  298 (378)
T ss_dssp             HHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCC
T ss_pred             HHHHHHhcCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccC
Confidence            22221     3799999999865432  3467885 7888888653

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.85  E-value=0.0056  Score=55.00  Aligned_cols=87  Identities=14%  Similarity=0.091  Sum_probs=57.9

Q ss_pred             HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHh----hhc--
Q 024116          123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPE----QIT--  177 (272)
Q Consensus       123 ~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------~~l~----~~l--  177 (272)
                      ++..+.+..---.|++|+|.|+++.+|..+++++...|++|+++.++.                   .+..    +.+  
T Consensus       128 a~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  207 (327)
T 1qor_A          128 VYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGG  207 (327)
T ss_dssp             HHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTT
T ss_pred             HHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCC
Confidence            334444332223699999999655579999999999999998887642                   1111    111  


Q ss_pred             CCCcEEEEecCCCccc--cCCCcCCCcEEEEeeeC
Q 024116          178 SEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       178 ~~ADIVIsa~g~p~~i--~~~~vk~g~vviDig~~  210 (272)
                      ...|+||+++| +..+  --+.++++-.++.+|..
T Consensus       208 ~~~D~vi~~~g-~~~~~~~~~~l~~~G~iv~~g~~  241 (327)
T 1qor_A          208 KKVRVVYDSVG-RDTWERSLDCLQRRGLMVSFGNS  241 (327)
T ss_dssp             CCEEEEEECSC-GGGHHHHHHTEEEEEEEEECCCT
T ss_pred             CCceEEEECCc-hHHHHHHHHHhcCCCEEEEEecC
Confidence            24799999998 3332  22456777778888864

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=95.84  E-value=0.0043  Score=56.48  Aligned_cols=93  Identities=12%  Similarity=-0.040  Sum_probs=60.4

Q ss_pred             cCCHHHHHHHHHHhCCCCcc-ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------CHhhh
Q 024116          117 PCTPKGCIELLIRSGVEIMG-KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------NPEQI  176 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~g-k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------------~l~~~  176 (272)
                      |+.+..++.+++..+  ..| +.++|.|+++.+|..+++++...|++|+++.++..                   ++.+.
T Consensus       147 ~~~~~ta~~~~~~~~--~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~  224 (349)
T 3pi7_A          147 IVNPLTAIAMFDIVK--QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEAT  224 (349)
T ss_dssp             SHHHHHHHHHHHHHH--HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHH
T ss_pred             cccHHHHHHHHHHHh--hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHH
Confidence            444444444554444  445 67777765566799999999999999988875431                   22222


Q ss_pred             c------CCCcEEEEecCCCccc-cCCCcCCCcEEEEeeeCC
Q 024116          177 T------SEADIVIAAAGVANLV-RGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       177 l------~~ADIVIsa~g~p~~i-~~~~vk~g~vviDig~~~  211 (272)
                      +      +..|+||.++|.+.+- --+.++++-.++.+|...
T Consensus       225 v~~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~  266 (349)
T 3pi7_A          225 LREVMKAEQPRIFLDAVTGPLASAIFNAMPKRARWIIYGRLD  266 (349)
T ss_dssp             HHHHHHHHCCCEEEESSCHHHHHHHHHHSCTTCEEEECCCSC
T ss_pred             HHHHhcCCCCcEEEECCCChhHHHHHhhhcCCCEEEEEeccC
Confidence            2      3589999999976431 123567887888888543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.84  E-value=0.0059  Score=51.76  Aligned_cols=52  Identities=13%  Similarity=0.144  Sum_probs=41.8

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------------------CHhh-hcCCCcEEEEecCCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------------NPEQ-ITSEADIVIAAAGVA  190 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~----------------------~l~~-~l~~ADIVIsa~g~p  190 (272)
                      +++|+|+|. +|+.++..|.++|..|++++++.+                      .+++ .+.+||+||.+++..
T Consensus         2 ~iiIiG~G~-~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   76 (218)
T 3l4b_C            2 KVIIIGGET-TAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRD   76 (218)
T ss_dssp             CEEEECCHH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCH
T ss_pred             EEEEECCCH-HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCc
Confidence            699999977 599999999999999999986531                      1222 378899999999864

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.84  E-value=0.015  Score=52.64  Aligned_cols=53  Identities=21%  Similarity=0.371  Sum_probs=41.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHhhhcCCCcEEEEecCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t--------------------------~~l~~~l~~ADIVIsa~g~  189 (272)
                      +||+|||+|. +|.+++..|+..|. +|.+++.+.                          .++ +.+++||+||.++|.
T Consensus         3 ~kI~VIGaG~-vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~   80 (309)
T 1ur5_A            3 KKISIIGAGF-VGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGA   80 (309)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CEEEEECCCH-HHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCC
Confidence            5899999966 69999999999985 888776532                          233 678999999999986


Q ss_pred             Cc
Q 024116          190 AN  191 (272)
Q Consensus       190 p~  191 (272)
                      |.
T Consensus        81 p~   82 (309)
T 1ur5_A           81 PR   82 (309)
T ss_dssp             --
T ss_pred             CC
Confidence            63

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=95.83  E-value=0.0078  Score=57.91  Aligned_cols=124  Identities=16%  Similarity=0.110  Sum_probs=68.4

Q ss_pred             ccceEEEEcCCcccHHH-HHHHHHhCCCEEEEEeCCCCCHhhhcCCCcEEEEecCCCccccCCCcC-CCcEEEEeeeCCC
Q 024116          135 MGKNAVVIGRSNIVGLP-TSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLK-PGAVVLDVGTCPV  212 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~-la~~L~~~ga~V~v~~~~t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk-~g~vviDig~~~~  212 (272)
                      +.|++.|||-|++ |++ +|.+|.++|++|++++.+.....+.+++..+-|. .|.    .++.+. ...+|+--|+++.
T Consensus        21 ~~~~v~viGiG~s-G~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~-~g~----~~~~~~~~d~vV~Spgi~~~   94 (494)
T 4hv4_A           21 RVRHIHFVGIGGA-GMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIY-FHH----RPENVLDASVVVVSTAISAD   94 (494)
T ss_dssp             -CCEEEEETTTST-THHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEE-SSC----CGGGGTTCSEEEECTTSCTT
T ss_pred             cCCEEEEEEEcHh-hHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEE-CCC----CHHHcCCCCEEEECCCCCCC
Confidence            4689999999998 996 8999999999999998764333233332222221 120    111121 1234444444432


Q ss_pred             CCCCCCCCCCCceEecccchhh-hhhhceEeccCCCcccHHHHHHHHHHHHHHH
Q 024116          213 DVSVDPSCEYGYRLMGDVCYEE-AMRLASVITPVPGGVGPMTVAMLLSNTLDSA  265 (272)
Q Consensus       213 ~~~~~~~~~~~~k~~Gdvd~~~-~~~~~~~~tpvpGGvGp~T~amL~~n~v~a~  265 (272)
                      ..........+-.+++++++-. +.+....+ -|-|--|.=|+..|+.+++++.
T Consensus        95 ~p~~~~a~~~gi~v~~~~e~l~~~~~~~~~I-aVTGTnGKTTTt~ml~~iL~~~  147 (494)
T 4hv4_A           95 NPEIVAAREARIPVIRRAEMLAELMRYRHGI-AVAGTHGKTTTTAMLSSIYAEA  147 (494)
T ss_dssp             CHHHHHHHHTTCCEEEHHHHHHHHHTTSEEE-EEECSSSHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHCCCCEEcHHHHHHHHhcCCCEE-EEecCCChHHHHHHHHHHHHhc
Confidence            1000000001224677776522 22211122 3568889999999999988764

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=95.83  E-value=0.0045  Score=54.04  Aligned_cols=38  Identities=21%  Similarity=0.371  Sum_probs=34.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   43 (262)
T 3pk0_A            6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRS   43 (262)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            36899999999998888999999999999999999876

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=95.82  E-value=0.0045  Score=52.95  Aligned_cols=37  Identities=19%  Similarity=0.280  Sum_probs=34.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus        11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~   47 (247)
T 3i1j_A           11 LLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRT   47 (247)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecC
Confidence            5789999999998888999999999999999999875

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=95.82  E-value=0.011  Score=56.75  Aligned_cols=73  Identities=22%  Similarity=0.382  Sum_probs=53.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhC--CCEEEEEeCCC---------------C------------------CHhhhcCCCc
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALT---------------K------------------NPEQITSEAD  181 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~--ga~V~v~~~~t---------------~------------------~l~~~l~~AD  181 (272)
                      .+|.|||.|.+ |.+++..|++.  |.+|++++++.               +                  ++.+.+++||
T Consensus        10 mkI~VIG~G~v-G~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aD   88 (481)
T 2o3j_A           10 SKVVCVGAGYV-GGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEAD   88 (481)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred             CEEEEECCCHH-HHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCC
Confidence            58999999885 99999999988  68999998642               1                  1234567899


Q ss_pred             EEEEecCCCcc--------------cc------CCCcCCCcEEEEeeeC
Q 024116          182 IVIAAAGVANL--------------VR------GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       182 IVIsa~g~p~~--------------i~------~~~vk~g~vviDig~~  210 (272)
                      +||.+++.|.-              +.      ...++++.+|||....
T Consensus        89 vvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv  137 (481)
T 2o3j_A           89 LIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTV  137 (481)
T ss_dssp             EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCC
T ss_pred             EEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence            99999886631              11      1245778999985433

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=95.80  E-value=0.0056  Score=53.80  Aligned_cols=39  Identities=21%  Similarity=0.170  Sum_probs=34.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   45 (281)
T 3svt_A            7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNP   45 (281)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468999999999988899999999999999999998763

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.80  E-value=0.016  Score=51.54  Aligned_cols=35  Identities=26%  Similarity=0.304  Sum_probs=31.9

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++|+|.|+++.+|+.++..|+++|++|+++.|.
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~   38 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNL   38 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecC
Confidence            47899999998889999999999999999998764

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.80  E-value=0.013  Score=53.72  Aligned_cols=77  Identities=17%  Similarity=0.152  Sum_probs=54.8

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC---------------------CHhhhcC-----CCcEEEEe
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK---------------------NPEQITS-----EADIVIAA  186 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t~---------------------~l~~~l~-----~ADIVIsa  186 (272)
                      -.|.+|+|+|+|. +|..+++++...|+ +|+++.++..                     ++.+.++     .+|+||.+
T Consensus       190 ~~g~~VlV~GaG~-vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~  268 (373)
T 1p0f_A          190 TPGSTCAVFGLGG-VGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC  268 (373)
T ss_dssp             CTTCEEEEECCSH-HHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEEC
Confidence            3699999999866 69999999999998 7888764321                     1222222     47999999


Q ss_pred             cCCCcccc--CCCcCCC-cEEEEeeeCC
Q 024116          187 AGVANLVR--GSWLKPG-AVVLDVGTCP  211 (272)
Q Consensus       187 ~g~p~~i~--~~~vk~g-~vviDig~~~  211 (272)
                      +|.+..+.  -+.++++ -.++.+|...
T Consensus       269 ~g~~~~~~~~~~~l~~~~G~iv~~G~~~  296 (373)
T 1p0f_A          269 AGRIETMMNALQSTYCGSGVTVVLGLAS  296 (373)
T ss_dssp             SCCHHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEccCC
Confidence            99755432  3467877 7788888643

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=95.80  E-value=0.011  Score=52.00  Aligned_cols=54  Identities=11%  Similarity=0.105  Sum_probs=43.2

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------------------CHhhhcCCCcEEEEe
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------------NPEQITSEADIVIAA  186 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-----------------------------~l~~~l~~ADIVIsa  186 (272)
                      .++|+|.|++|.+|+.++..|+++|.+|+++.|+..                             ++.+.++.+|+||..
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   83 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   83 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence            478999999888899999999999999999887621                             134556778888877


Q ss_pred             cCC
Q 024116          187 AGV  189 (272)
Q Consensus       187 ~g~  189 (272)
                      +|.
T Consensus        84 a~~   86 (313)
T 1qyd_A           84 LAG   86 (313)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            764

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=95.79  E-value=0.0058  Score=52.93  Aligned_cols=37  Identities=22%  Similarity=0.224  Sum_probs=34.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   45 (252)
T 3f1l_A            9 LLNDRIILVTGASDGIGREAAMTYARYGATVILLGRN   45 (252)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999998888999999999999999999876

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.79  E-value=0.039  Score=49.61  Aligned_cols=70  Identities=21%  Similarity=0.283  Sum_probs=50.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------------CCHhhhcCCCcEEEEecCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t---------------------------~~l~~~l~~ADIVIsa~g~  189 (272)
                      .+++|||+|.+ |..++..|.+.|.+|+++.|..                           .+..+..+.+|+||.++..
T Consensus         3 mkI~IiGaGai-G~~~a~~L~~~g~~V~~~~r~~~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~   81 (320)
T 3i83_A            3 LNILVIGTGAI-GSFYGALLAKTGHCVSVVSRSDYETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKV   81 (320)
T ss_dssp             CEEEEESCCHH-HHHHHHHHHHTTCEEEEECSTTHHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCC
T ss_pred             CEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCChHHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCC
Confidence            58999999885 9999999999999999997752                           1122333489999999985


Q ss_pred             Ccc---cc--CCCcCCCcEEEEe
Q 024116          190 ANL---VR--GSWLKPGAVVLDV  207 (272)
Q Consensus       190 p~~---i~--~~~vk~g~vviDi  207 (272)
                      ..+   +.  ...++++.+|+.+
T Consensus        82 ~~~~~~l~~l~~~l~~~t~Iv~~  104 (320)
T 3i83_A           82 VEGADRVGLLRDAVAPDTGIVLI  104 (320)
T ss_dssp             CTTCCHHHHHTTSCCTTCEEEEE
T ss_pred             CChHHHHHHHHhhcCCCCEEEEe
Confidence            432   11  2356677777765

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=95.78  E-value=0.009  Score=51.53  Aligned_cols=39  Identities=18%  Similarity=0.289  Sum_probs=35.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus        11 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   49 (247)
T 1uzm_A           11 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGS   49 (247)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            467899999999988899999999999999999998764

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=95.77  E-value=0.015  Score=51.13  Aligned_cols=38  Identities=13%  Similarity=0.171  Sum_probs=33.2

Q ss_pred             CCccceEEEEcCCcc--cHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNI--VGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~--vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .++||+++|.|+++.  +|+.++..|+++|++|.++.|+.
T Consensus        23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           23 FLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             TTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            578999999997643  79999999999999999998764

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=95.77  E-value=0.007  Score=52.21  Aligned_cols=70  Identities=20%  Similarity=0.231  Sum_probs=52.6

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEE-EEEeCCC------CCHhhhc-CCCcEEEEecCCC-cc-ccCCCcCCCcEEEEe
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATV-SIVHALT------KNPEQIT-SEADIVIAAAGVA-NL-VRGSWLKPGAVVLDV  207 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V-~v~~~~t------~~l~~~l-~~ADIVIsa~g~p-~~-i~~~~vk~g~vviDi  207 (272)
                      ++.|||.|.+ |+.++..|.+.|.++ .+++++.      .++++.+ .++|+||.+++.. +. +-...++.|..|++.
T Consensus         2 ~vgiIG~G~m-G~~~~~~l~~~g~~lv~v~d~~~~~~~~~~~~~~l~~~~~DvVv~~~~~~~~~~~~~~~l~~G~~vv~~   80 (236)
T 2dc1_A            2 LVGLIGYGAI-GKFLAEWLERNGFEIAAILDVRGEHEKMVRGIDEFLQREMDVAVEAASQQAVKDYAEKILKAGIDLIVL   80 (236)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEEECSSCCCTTEESSHHHHTTSCCSEEEECSCHHHHHHHHHHHHHTTCEEEES
T ss_pred             EEEEECCCHH-HHHHHHHHhcCCCEEEEEEecCcchhhhcCCHHHHhcCCCCEEEECCCHHHHHHHHHHHHHCCCcEEEE
Confidence            6899999885 999999998888886 6888763      3577777 6899999999742 11 122346778888886


Q ss_pred             e
Q 024116          208 G  208 (272)
Q Consensus       208 g  208 (272)
                      .
T Consensus        81 ~   81 (236)
T 2dc1_A           81 S   81 (236)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=95.76  E-value=0.01  Score=52.21  Aligned_cols=36  Identities=22%  Similarity=0.102  Sum_probs=31.1

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   57 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARD   57 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            579999999998888999999999999999999876

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.76  E-value=0.0093  Score=52.03  Aligned_cols=53  Identities=13%  Similarity=0.137  Sum_probs=41.5

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------CHhhhcCC-CcEEEEecC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------NPEQITSE-ADIVIAAAG  188 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-----------------~l~~~l~~-ADIVIsa~g  188 (272)
                      ++++|+|.|+ |.+|+.++..|.++|.+|+++.|+..                 .+.+.++. +|+||...+
T Consensus         2 ~~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            2 SLSKILIAGC-GDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            4689999997 55799999999999999999987632                 22344555 899997765

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.75  E-value=0.0084  Score=54.56  Aligned_cols=93  Identities=20%  Similarity=0.171  Sum_probs=63.5

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHh--
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPE--  174 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t-------------------~~l~--  174 (272)
                      |+....++..++..++ -.|.+|+|+|+|. +|..+++++...|+ +|+++.++.                   .++.  
T Consensus       149 ~~~~~ta~~al~~~~~-~~g~~VlV~GaG~-vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~  226 (352)
T 3fpc_A          149 PDMMTTGFHGAELANI-KLGDTVCVIGIGP-VGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQ  226 (352)
T ss_dssp             TTHHHHHHHHHHHTTC-CTTCCEEEECCSH-HHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHH
T ss_pred             cchhHHHHHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHH
Confidence            3333334555654443 4699999999866 69999999999998 788887642                   1222  


Q ss_pred             --hhcC--CCcEEEEecCCCcccc--CCCcCCCcEEEEeeeCC
Q 024116          175 --QITS--EADIVIAAAGVANLVR--GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       175 --~~l~--~ADIVIsa~g~p~~i~--~~~vk~g~vviDig~~~  211 (272)
                        +.+.  .+|+||.++|.+..+.  -+.++++-.++.+|...
T Consensus       227 v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G~~~  269 (352)
T 3fpc_A          227 ILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLG  269 (352)
T ss_dssp             HHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCC
T ss_pred             HHHHcCCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEecccC
Confidence              2222  4899999999876432  34678888888888654

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.75  E-value=0.0063  Score=53.23  Aligned_cols=38  Identities=24%  Similarity=0.312  Sum_probs=34.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~   40 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE   40 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46899999999988899999999999999999998763

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.75  E-value=0.0088  Score=56.53  Aligned_cols=37  Identities=24%  Similarity=0.329  Sum_probs=33.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++++|+++|||.|++ |.+++..|.++|++|+.++++.
T Consensus         2 ~~~~~~v~viG~G~~-G~~~a~~l~~~G~~v~~~D~~~   38 (439)
T 2x5o_A            2 DYQGKNVVIIGLGLT-GLSCVDFFLARGVTPRVMDTRM   38 (439)
T ss_dssp             CCTTCCEEEECCHHH-HHHHHHHHHTTTCCCEEEESSS
T ss_pred             CCCCCEEEEEeecHH-HHHHHHHHHhCCCEEEEEECCC
Confidence            368999999999997 9999999999999999998764

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=95.74  E-value=0.014  Score=52.77  Aligned_cols=51  Identities=16%  Similarity=0.314  Sum_probs=42.1

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC--------------------------CCHhhhcCCCcEEEEecCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT--------------------------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t--------------------------~~l~~~l~~ADIVIsa~g~  189 (272)
                      ||.|+|+|. +|.+++..|+..|.  +|+++++..                          .+ ++.+++||+||.+.|.
T Consensus         2 kI~ViGaG~-vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~   79 (294)
T 1oju_A            2 KLGFVGAGR-VGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             EEEEECCCH-HHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence            799999976 59999999998886  888887541                          23 6788999999999986


Q ss_pred             C
Q 024116          190 A  190 (272)
Q Consensus       190 p  190 (272)
                      |
T Consensus        80 ~   80 (294)
T 1oju_A           80 A   80 (294)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=95.74  E-value=0.02  Score=51.23  Aligned_cols=36  Identities=19%  Similarity=0.213  Sum_probs=31.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++++|+|.|++|.+|+.++..|+++|++|+++.|.
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   60 (343)
T 2b69_A           25 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   60 (343)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            578999999998889999999999999999998874

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=95.73  E-value=0.014  Score=52.11  Aligned_cols=91  Identities=13%  Similarity=0.128  Sum_probs=56.5

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHh---h------------hcCCCc
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPE---Q------------ITSEAD  181 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l~---~------------~l~~AD  181 (272)
                      |+....++..|+ ..---.|.+|+|.|+|. +|..+++++...|++|+.+. +...++   +            .-+.+|
T Consensus       125 ~~~~~ta~~al~-~~~~~~g~~VlV~GaG~-vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v~~g~D  201 (315)
T 3goh_A          125 PCPLLTAWQAFE-KIPLTKQREVLIVGFGA-VNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQVTQKYF  201 (315)
T ss_dssp             HHHHHHHHHHHT-TSCCCSCCEEEEECCSH-HHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGCCSCEE
T ss_pred             ccHHHHHHHHHh-hcCCCCCCEEEEECCCH-HHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHhCCCcc
Confidence            444444555663 32234799999999955 69999999999999988887 433321   1            014579


Q ss_pred             EEEEecCCCccc-cCCCcCCCcEEEEeeeC
Q 024116          182 IVIAAAGVANLV-RGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       182 IVIsa~g~p~~i-~~~~vk~g~vviDig~~  210 (272)
                      +||.++|.+..- .-+.++++-.++.+|..
T Consensus       202 vv~d~~g~~~~~~~~~~l~~~G~~v~~g~~  231 (315)
T 3goh_A          202 AIFDAVNSQNAAALVPSLKANGHIICIQDR  231 (315)
T ss_dssp             EEECC-------TTGGGEEEEEEEEEECCC
T ss_pred             EEEECCCchhHHHHHHHhcCCCEEEEEeCC
Confidence            999999976542 23456777777777654

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=95.73  E-value=0.019  Score=52.38  Aligned_cols=55  Identities=24%  Similarity=0.302  Sum_probs=44.0

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC-------------------------CHhhhcCCCcEEEEecC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK-------------------------NPEQITSEADIVIAAAG  188 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t~-------------------------~l~~~l~~ADIVIsa~g  188 (272)
                      +.+||.|||+|. +|.+++..|+..+. +|.+++....                         +..+.+++||+||.++|
T Consensus         4 ~~~kI~iiGaG~-vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag   82 (321)
T 3p7m_A            4 ARKKITLVGAGN-IGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAG   82 (321)
T ss_dssp             CCCEEEEECCSH-HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCS
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCC
Confidence            457999999977 59999999998886 8888875420                         12478899999999998


Q ss_pred             CC
Q 024116          189 VA  190 (272)
Q Consensus       189 ~p  190 (272)
                      .|
T Consensus        83 ~p   84 (321)
T 3p7m_A           83 VP   84 (321)
T ss_dssp             CC
T ss_pred             cC
Confidence            65

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=95.72  E-value=0.0075  Score=53.19  Aligned_cols=37  Identities=16%  Similarity=0.229  Sum_probs=34.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         2 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   38 (281)
T 3zv4_A            2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKS   38 (281)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            4789999999998888999999999999999999876

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=95.72  E-value=0.009  Score=51.25  Aligned_cols=37  Identities=24%  Similarity=0.193  Sum_probs=29.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++-+|+.++..|++ |+.|+++.|+.
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~   38 (245)
T 3e9n_A            2 SLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNP   38 (245)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCH
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            46899999999988899999999987 88999988764

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=95.71  E-value=0.0079  Score=51.90  Aligned_cols=37  Identities=30%  Similarity=0.346  Sum_probs=34.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~   40 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARR   40 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4789999999998889999999999999999999876

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=95.71  E-value=0.0067  Score=52.19  Aligned_cols=37  Identities=19%  Similarity=0.243  Sum_probs=33.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   39 (246)
T 2ag5_A            3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDIN   39 (246)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4689999999998889999999999999999999875

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=95.70  E-value=0.013  Score=50.77  Aligned_cols=38  Identities=29%  Similarity=0.374  Sum_probs=34.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (263)
T 3ai3_A            3 MGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQ   40 (263)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            45789999999998889999999999999999998775

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=95.70  E-value=0.018  Score=50.51  Aligned_cols=53  Identities=19%  Similarity=0.122  Sum_probs=42.8

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCCCC-----------------------HhhhcCCCcEEEEecC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTKN-----------------------PEQITSEADIVIAAAG  188 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t~~-----------------------l~~~l~~ADIVIsa~g  188 (272)
                      .|+++|.|++|.+|+.++..|+++| .+|+++.|+...                       +.+.++.+|+||..+|
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            5899999998889999999999998 899998876422                       2345677888887765

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.70  E-value=0.012  Score=53.85  Aligned_cols=95  Identities=17%  Similarity=0.160  Sum_probs=61.4

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC---------------------CH
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK---------------------NP  173 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t~---------------------~l  173 (272)
                      +||.....+..+.+..---.|.+|+|+|+|+ +|..+++++...|+ +|+.+.++..                     ++
T Consensus       171 l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~-vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~  249 (373)
T 2fzw_A          171 LGCGISTGYGAAVNTAKLEPGSVCAVFGLGG-VGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPI  249 (373)
T ss_dssp             GGTHHHHHHHHHHTTTCCCTTCEEEEECCSH-HHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCH
T ss_pred             hccHHHHHHHHHHhhcCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccH
Confidence            3443333344443322224699999999866 69999999999998 7888764321                     12


Q ss_pred             hhhcC-----CCcEEEEecCCCcccc--CCCcCCC-cEEEEeeeCC
Q 024116          174 EQITS-----EADIVIAAAGVANLVR--GSWLKPG-AVVLDVGTCP  211 (272)
Q Consensus       174 ~~~l~-----~ADIVIsa~g~p~~i~--~~~vk~g-~vviDig~~~  211 (272)
                      .+.++     .+|+||.++|.+..+.  -+.++++ -.++.+|...
T Consensus       250 ~~~v~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~  295 (373)
T 2fzw_A          250 QEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAA  295 (373)
T ss_dssp             HHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCC
T ss_pred             HHHHHHHhCCCCCEEEECCCcHHHHHHHHHhhccCCcEEEEEecCC
Confidence            22222     4799999999754432  3467887 7888888643

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=95.69  E-value=0.014  Score=52.45  Aligned_cols=53  Identities=23%  Similarity=0.276  Sum_probs=42.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC--CEEEEEeCCC-------------------------CCHhhhcCCCcEEEEecCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALT-------------------------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~g--a~V~v~~~~t-------------------------~~l~~~l~~ADIVIsa~g~  189 (272)
                      ++|.|||+|. +|.+++..|+..|  .+|++++++.                         .++ +.+++||+||.+++.
T Consensus         2 ~kI~VIGaG~-~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~   79 (309)
T 1hyh_A            2 RKIGIIGLGN-VGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGN   79 (309)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred             CEEEEECCCH-HHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence            4799999877 5999999999988  6899997652                         122 456789999999986


Q ss_pred             Cc
Q 024116          190 AN  191 (272)
Q Consensus       190 p~  191 (272)
                      |.
T Consensus        80 ~~   81 (309)
T 1hyh_A           80 IK   81 (309)
T ss_dssp             GG
T ss_pred             cc
Confidence            54

>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}

Probab=95.68  E-value=0.023  Score=53.59  Aligned_cols=148  Identities=15%  Similarity=0.098  Sum_probs=94.6

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCccEEEEcCCC---CCCCCHHHHHhcCCccccc-Ccc--
Q 024116           28 NKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPL---PQHLDEGKILDAVSLEKDV-DGF--   98 (272)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~l~~~~---~~~el~~~i~~ln~d~~v~Gi~vq~Pl---p~~~~~~~i~~~i~p~KDv-dg~--   98 (272)
                      +=..++.++|.++.+..- .+.   .-+-+.+.++-|..-  +|+|.+--|.   ..+....++.++..  ++. +|+  
T Consensus        80 SFE~A~~~LGg~~i~l~~-~~ssl~kGEsl~DTarvLs~y--~D~IviRh~~~~g~~~~~~~~la~~~~--~~~~~~v~~  154 (399)
T 3q98_A           80 SYASALNLLGLAQQDLDE-GKSQIAHGETVRETANMISFC--ADAIGIRDDMYLGAGNAYMREVGAALD--DGYKQGVLP  154 (399)
T ss_dssp             HHHHHHHHHTCEEEECC--------CCTTHHHHHHHTCTT--EEEEEEEECCCCCC---HHHHHHHHHH--HHHHTTSCS
T ss_pred             HHHHHHHHcCCeEEEeCC-ccccCCCCCCHHHHHHHHHhh--CcEEEEeccccCCcchHHHHHHHHHhh--hhccccccc
Confidence            345788999999877542 111   134477788888763  8999998774   12211222322210  000 121  


Q ss_pred             ---ccccccccccCCCCCccccCCHHH-HHHHHHHhCC--CCccceEEEEc-------CCcccHHHHHHHHHhCCCEEEE
Q 024116           99 ---HPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGV--EIMGKNAVVIG-------RSNIVGLPTSLLLQRHHATVSI  165 (272)
Q Consensus        99 ---~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~--~l~gk~v~ViG-------~g~~vG~~la~~L~~~ga~V~v  165 (272)
                         -.+|.+       .+.+.||=+.+ ++.+.++.|-  .++|++|+++|       ++..|.+.++..+...|++|++
T Consensus       155 ~~~PVINal-------~d~~HPtQaLaDl~TI~E~~G~~~~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~v~~  227 (399)
T 3q98_A          155 QRPALVNLQ-------CDIDHPTQSMADLAWLREHFGSLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTL  227 (399)
T ss_dssp             SCCEEEEEE-------CSSCCHHHHHHHHHHHHHHHSSSGGGTTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCEEEE
T ss_pred             CCCcEEeCC-------CCCcCcHHHHHHHHHHHHHhCCccccCCCEEEEEEecccccCcchHHHHHHHHHHHHcCCEEEE
Confidence               234532       34577998888 6666666664  47999999984       4546789999999999999999


Q ss_pred             EeCC-------------------------CCCHhhhcCCCcEEEEec
Q 024116          166 VHAL-------------------------TKNPEQITSEADIVIAAA  187 (272)
Q Consensus       166 ~~~~-------------------------t~~l~~~l~~ADIVIsa~  187 (272)
                      +.-.                         +.++.+.++.||+|++-+
T Consensus       228 ~~P~~~~~~~~~~~~a~~~a~~~G~~i~~~~d~~eav~~aDvVytd~  274 (399)
T 3q98_A          228 AHPEGYDLIPDVVEVAKNNAKASGGSFRQVTSMEEAFKDADIVYPKS  274 (399)
T ss_dssp             ECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECC
T ss_pred             ECCcccCCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEecC
Confidence            8643                         145678899999999864

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=95.68  E-value=0.014  Score=50.55  Aligned_cols=38  Identities=24%  Similarity=0.265  Sum_probs=33.7

Q ss_pred             CCCccceEEEEcCCcc--cHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNI--VGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~--vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++.  +|+.++..|+++|++|+++.|+
T Consensus         3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~   42 (266)
T 3oig_A            3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAG   42 (266)
T ss_dssp             SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCc
Confidence            4689999999998755  7999999999999999998765

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=95.67  E-value=0.011  Score=51.05  Aligned_cols=38  Identities=21%  Similarity=0.267  Sum_probs=34.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (249)
T 2ew8_A            4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP   41 (249)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCc
Confidence            47899999999998899999999999999999998765

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=95.66  E-value=0.017  Score=51.56  Aligned_cols=36  Identities=19%  Similarity=0.102  Sum_probs=30.0

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++|+|+|.|++|.+|+.++..|+++|++|+++.|+
T Consensus         3 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~   38 (337)
T 2c29_D            3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRD   38 (337)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECC
Confidence            368999999998889999999999999999877654

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=95.66  E-value=0.01  Score=52.29  Aligned_cols=39  Identities=21%  Similarity=0.239  Sum_probs=35.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++|+||.++|-|++.=+|++++..|+++|++|.++.++.
T Consensus         5 f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~   43 (247)
T 4hp8_A            5 FSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRA   43 (247)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            589999999999888889999999999999999998864

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=95.66  E-value=0.0096  Score=53.99  Aligned_cols=76  Identities=17%  Similarity=0.153  Sum_probs=53.8

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHh----hhc--CCCcEEEEecCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPE----QIT--SEADIVIAAAGV  189 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------~~l~----~~l--~~ADIVIsa~g~  189 (272)
                      .|++|+|+|+++.+|..+++++...|++|+.+.++.                   .++.    +..  +..|+||.++| 
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g-  244 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTG-  244 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEEESSC-
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-
Confidence            699999999955579999999999999998887642                   1111    222  25799999998 


Q ss_pred             Ccccc--CCCcCCCcEEEEeeeCC
Q 024116          190 ANLVR--GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       190 p~~i~--~~~vk~g~vviDig~~~  211 (272)
                      +..+.  -+.++++-.++.+|...
T Consensus       245 ~~~~~~~~~~l~~~G~~v~~g~~~  268 (343)
T 2eih_A          245 ALYFEGVIKATANGGRIAIAGASS  268 (343)
T ss_dssp             SSSHHHHHHHEEEEEEEEESSCCC
T ss_pred             HHHHHHHHHhhccCCEEEEEecCC
Confidence            43322  23567766777887643

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=95.65  E-value=0.0063  Score=53.07  Aligned_cols=38  Identities=13%  Similarity=0.088  Sum_probs=34.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ..++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   44 (264)
T 3ucx_A            7 GLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAART   44 (264)
T ss_dssp             CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            35789999999998888999999999999999999876

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=95.65  E-value=0.0047  Score=53.95  Aligned_cols=38  Identities=26%  Similarity=0.289  Sum_probs=34.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~   43 (267)
T 3t4x_A            6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRR   43 (267)
T ss_dssp             CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46789999999998888999999999999999999876

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=95.64  E-value=0.0055  Score=53.55  Aligned_cols=37  Identities=16%  Similarity=0.214  Sum_probs=34.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   53 (266)
T 4egf_A           17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRD   53 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999998888999999999999999999875

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=95.63  E-value=0.027  Score=50.06  Aligned_cols=53  Identities=19%  Similarity=0.273  Sum_probs=41.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC---------------------HhhhcCCCcEEEEecCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------------------PEQITSEADIVIAAAGV  189 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~---------------------l~~~l~~ADIVIsa~g~  189 (272)
                      .+|+|.|++|.+|+.++..|+++|++|+++.|+...                     +.+.++..|+||...|.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~   87 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAGY   87 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC---
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCcc
Confidence            489999998889999999999999999998875321                     23556778999977763

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=95.63  E-value=0.0088  Score=50.14  Aligned_cols=70  Identities=16%  Similarity=0.191  Sum_probs=50.8

Q ss_pred             eEEEEc-CCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------CHhhhcCCCcEEEEecCCCc---c
Q 024116          138 NAVVIG-RSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAGVAN---L  192 (272)
Q Consensus       138 ~v~ViG-~g~~vG~~la~~L~~~ga~V~v~~~~t~---------------------~l~~~l~~ADIVIsa~g~p~---~  192 (272)
                      ++.|+| .|. +|++++..|.+.|.+|++++|+.+                     ++.+.++++|+||.+++...   .
T Consensus         2 ~i~iiGa~G~-~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~~~~~~~~~~   80 (212)
T 1jay_A            2 RVALLGGTGN-LGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWEHAIDT   80 (212)
T ss_dssp             EEEEETTTSH-HHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHHHHHHH
T ss_pred             eEEEEcCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEeCChhhHHHH
Confidence            689999 666 599999999999999999987631                     12345678999999998432   1


Q ss_pred             cc--CCCcCCCcEEEEeee
Q 024116          193 VR--GSWLKPGAVVLDVGT  209 (272)
Q Consensus       193 i~--~~~vk~g~vviDig~  209 (272)
                      +.  ...+ ++.+++|+..
T Consensus        81 ~~~l~~~~-~~~~vi~~~~   98 (212)
T 1jay_A           81 ARDLKNIL-REKIVVSPLV   98 (212)
T ss_dssp             HHHTHHHH-TTSEEEECCC
T ss_pred             HHHHHHHc-CCCEEEEcCC
Confidence            21  0123 4789999874

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=95.61  E-value=0.012  Score=51.41  Aligned_cols=39  Identities=26%  Similarity=0.226  Sum_probs=35.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK  171 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~  171 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+..
T Consensus        31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~   69 (279)
T 3ctm_A           31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHP   69 (279)
T ss_dssp             CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578999999999988999999999999999999987653

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=95.61  E-value=0.0082  Score=52.52  Aligned_cols=37  Identities=19%  Similarity=0.112  Sum_probs=34.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~   65 (279)
T 1xg5_A           29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCART   65 (279)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence            4789999999999889999999999999999998875

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=95.61  E-value=0.0074  Score=53.86  Aligned_cols=37  Identities=27%  Similarity=0.347  Sum_probs=34.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~   64 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVD   64 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            5899999999998888999999999999999999876

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=95.60  E-value=0.014  Score=50.02  Aligned_cols=38  Identities=24%  Similarity=0.273  Sum_probs=34.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         9 ~~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~   46 (260)
T 3awd_A            9 LRLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLD   46 (260)
T ss_dssp             GCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999889999999999999999999875

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=95.60  E-value=0.012  Score=50.03  Aligned_cols=39  Identities=23%  Similarity=0.284  Sum_probs=35.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         3 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~   41 (248)
T 2pnf_A            3 IKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSG   41 (248)
T ss_dssp             CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence            467899999999999999999999999999999988753

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=95.60  E-value=0.0091  Score=51.90  Aligned_cols=37  Identities=24%  Similarity=0.416  Sum_probs=34.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (262)
T 1zem_A            4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMN   40 (262)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999998889999999999999999998875

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=95.59  E-value=0.0092  Score=51.95  Aligned_cols=38  Identities=18%  Similarity=0.275  Sum_probs=34.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   46 (267)
T 1iy8_A            9 TRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVS   46 (267)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999998889999999999999999998775

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=95.59  E-value=0.0074  Score=53.06  Aligned_cols=37  Identities=19%  Similarity=0.261  Sum_probs=34.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~   60 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRS   60 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESC
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999998888999999999999999999876

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=95.58  E-value=0.019  Score=50.68  Aligned_cols=57  Identities=16%  Similarity=0.156  Sum_probs=42.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------C------HhhhcCC--CcEEEEecCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------N------PEQITSE--ADIVIAAAGV  189 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-----------~------l~~~l~~--ADIVIsa~g~  189 (272)
                      .-+-++|+|.|++|.+|+.++..|+++|++|+++.|...           +      +.+.++.  .|+||...|.
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~   84 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAK   84 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSC
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCccccceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCcc
Confidence            346789999999999999999999999999999887632           1      2344443  7999988774

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=95.57  E-value=0.014  Score=50.94  Aligned_cols=40  Identities=20%  Similarity=0.232  Sum_probs=35.2

Q ss_pred             hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          130 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       130 ~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ...+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        15 ~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~   54 (267)
T 1vl8_A           15 EVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRN   54 (267)
T ss_dssp             --CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3467899999999999889999999999999999999875

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.57  E-value=0.017  Score=53.05  Aligned_cols=93  Identities=18%  Similarity=0.202  Sum_probs=60.3

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC---------------------CH
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK---------------------NP  173 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t~---------------------~l  173 (272)
                      +||.....+..+.+..---.|.+|+|+|+|. +|..+++++...|+ +|+++.++..                     ++
T Consensus       176 l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~-vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~  254 (376)
T 1e3i_A          176 IGCGFSSGYGAAINTAKVTPGSTCAVFGLGC-VGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPV  254 (376)
T ss_dssp             GGTHHHHHHHHHHTTSCCCTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCH
T ss_pred             hccHHHHHHHHHHHhcCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchH
Confidence            3443333444443322223699999999866 69999999999999 7888764321                     12


Q ss_pred             hhhcC-----CCcEEEEecCCCcccc--CCCcCCC-cEEEEeee
Q 024116          174 EQITS-----EADIVIAAAGVANLVR--GSWLKPG-AVVLDVGT  209 (272)
Q Consensus       174 ~~~l~-----~ADIVIsa~g~p~~i~--~~~vk~g-~vviDig~  209 (272)
                      .+.++     .+|+||.++|.+..+.  -++++++ -.++-+|.
T Consensus       255 ~~~v~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          255 QDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             HHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             HHHHHHHhCCCccEEEECCCCHHHHHHHHHHhhcCCCEEEEECC
Confidence            22221     4799999998754432  2467777 77778886

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=95.56  E-value=0.015  Score=50.36  Aligned_cols=38  Identities=24%  Similarity=0.144  Sum_probs=34.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         5 ~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~   42 (260)
T 2ae2_A            5 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRN   42 (260)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999889999999999999999998875

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=95.56  E-value=0.017  Score=52.61  Aligned_cols=56  Identities=30%  Similarity=0.424  Sum_probs=45.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC--C-------------------------CCHhhhcCCCcEEEE
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL--T-------------------------KNPEQITSEADIVIA  185 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~--t-------------------------~~l~~~l~~ADIVIs  185 (272)
                      .+.++|.|+|+|. +|.+++..|+..|. +|+++++.  .                         .+-.+.+++||+||.
T Consensus         6 ~~~~kv~ViGaG~-vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIi   84 (315)
T 3tl2_A            6 IKRKKVSVIGAGF-TGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVI   84 (315)
T ss_dssp             CCCCEEEEECCSH-HHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEE
T ss_pred             cCCCEEEEECCCH-HHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEE
Confidence            3568999999976 59999999999998 99998776  1                         011467899999999


Q ss_pred             ecCCC
Q 024116          186 AAGVA  190 (272)
Q Consensus       186 a~g~p  190 (272)
                      ++|.|
T Consensus        85 aag~p   89 (315)
T 3tl2_A           85 TAGIA   89 (315)
T ss_dssp             CCSCC
T ss_pred             eCCCC
Confidence            99865

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.56  E-value=0.0095  Score=54.59  Aligned_cols=95  Identities=16%  Similarity=0.152  Sum_probs=61.7

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHhh
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPEQ  175 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t-------------------~~l~~  175 (272)
                      +||.....+..+.+..---.|++|+|+|+|. +|..+++++...|+ .|+.+.++.                   .++.+
T Consensus       171 l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~-vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~  249 (371)
T 1f8f_A          171 LGCGIQTGAGACINALKVTPASSFVTWGAGA-VGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVA  249 (371)
T ss_dssp             GGTHHHHHHHHHHTTTCCCTTCEEEEESCSH-HHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHH
T ss_pred             hcchHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHH
Confidence            4554444455553222223699999999866 69999999998998 687776432                   12222


Q ss_pred             hcC-----CCcEEEEecCCCccc--cCCCcCCCcEEEEeeeCC
Q 024116          176 ITS-----EADIVIAAAGVANLV--RGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       176 ~l~-----~ADIVIsa~g~p~~i--~~~~vk~g~vviDig~~~  211 (272)
                      .++     .+|+||.++|.+..+  --+.++++-.++.+|...
T Consensus       250 ~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~  292 (371)
T 1f8f_A          250 AIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQ  292 (371)
T ss_dssp             HHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCS
T ss_pred             HHHHhcCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCCC
Confidence            222     479999999875443  234677777778888653

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=95.56  E-value=0.016  Score=49.74  Aligned_cols=36  Identities=31%  Similarity=0.277  Sum_probs=32.1

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +.+|+++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus         2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~   37 (246)
T 3osu_A            2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAG   37 (246)
T ss_dssp             CCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            468999999998888999999999999999887654

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=95.55  E-value=0.0054  Score=54.30  Aligned_cols=40  Identities=23%  Similarity=0.110  Sum_probs=31.5

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ..+++||+++|.|+++-+|++++..|+++|++|.++.|+.
T Consensus        28 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   67 (281)
T 4dry_A           28 KGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRP   67 (281)
T ss_dssp             ------CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3468999999999988889999999999999999998763

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=95.55  E-value=0.023  Score=51.29  Aligned_cols=51  Identities=29%  Similarity=0.455  Sum_probs=40.3

Q ss_pred             eEEEEcCCcccHHHHHHHHHhC--CCEEEEEeCCC--------------------------CCHhhhcCCCcEEEEecCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALT--------------------------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~--ga~V~v~~~~t--------------------------~~l~~~l~~ADIVIsa~g~  189 (272)
                      ||.|||+|. +|.+++..|+..  |.+|++++++.                          .+++ .+++||+||.++|.
T Consensus         2 kI~VIGaG~-vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~-~l~~aDvViiav~~   79 (310)
T 1guz_A            2 KITVIGAGN-VGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYA-DTANSDIVIITAGL   79 (310)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGG-GGTTCSEEEECCSC
T ss_pred             EEEEECCCH-HHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHH-HHCCCCEEEEeCCC
Confidence            799999966 599999999885  67899997653                          1233 37889999999986


Q ss_pred             C
Q 024116          190 A  190 (272)
Q Consensus       190 p  190 (272)
                      |
T Consensus        80 p   80 (310)
T 1guz_A           80 P   80 (310)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=95.54  E-value=0.0078  Score=52.06  Aligned_cols=54  Identities=19%  Similarity=0.193  Sum_probs=44.4

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------CHhhhcCCCcEEEEecCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------NPEQITSEADIVIAAAGV  189 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~------------------~l~~~l~~ADIVIsa~g~  189 (272)
                      .|+++|.|+++.+|+.++..|.++|++|+++.|+..                  .+.+.++..|+||...|.
T Consensus         2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~   73 (267)
T 3ay3_A            2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEIVACDLADAQAVHDLVKDCDGIIHLGGV   73 (267)
T ss_dssp             EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCCCTTEEECCCCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred             CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccEEEccCCCHHHHHHHHcCCCEEEECCcC
Confidence            378999999888999999999999999998877532                  234667789999988774

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.54  E-value=0.0072  Score=54.93  Aligned_cols=85  Identities=15%  Similarity=0.274  Sum_probs=59.4

Q ss_pred             HHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHhhhc------
Q 024116          124 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPEQIT------  177 (272)
Q Consensus       124 ~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t-------------------~~l~~~l------  177 (272)
                      +..++..++  .|++|+|+|+|+ +|..+++++...|+ +|+++.++.                   .++.+.+      
T Consensus       158 ~~~l~~~~~--~g~~VlV~GaG~-vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g  234 (348)
T 2d8a_A          158 VDTVLAGPI--SGKSVLITGAGP-LGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDG  234 (348)
T ss_dssp             HHHHTTSCC--TTCCEEEECCSH-HHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTT
T ss_pred             HHHHHhcCC--CCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCC
Confidence            444544444  899999999955 69999999999999 898886542                   1222222      


Q ss_pred             CCCcEEEEecCCCcccc--CCCcCCCcEEEEeeeCC
Q 024116          178 SEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       178 ~~ADIVIsa~g~p~~i~--~~~vk~g~vviDig~~~  211 (272)
                      +.+|+||.++|.+..+.  -+.++++-.++.+|...
T Consensus       235 ~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~  270 (348)
T 2d8a_A          235 NGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYP  270 (348)
T ss_dssp             SCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCS
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCC
Confidence            25899999999754432  24567777888888643

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=95.54  E-value=0.026  Score=50.19  Aligned_cols=34  Identities=24%  Similarity=0.175  Sum_probs=30.5

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +|+|+|.|++|.+|+.++..|+++|++|+++.|+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~   42 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRD   42 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcC
Confidence            7999999998889999999999999999876553

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=95.54  E-value=0.037  Score=44.15  Aligned_cols=55  Identities=11%  Similarity=0.085  Sum_probs=44.7

Q ss_pred             CccceEEEEcC----CcccHHHHHHHHHhCCCEEEEEeCCC---------CCHhhhcCCCcEEEEecCC
Q 024116          134 IMGKNAVVIGR----SNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       134 l~gk~v~ViG~----g~~vG~~la~~L~~~ga~V~v~~~~t---------~~l~~~l~~ADIVIsa~g~  189 (272)
                      ++-++|.|||+    |.+ |.+++..|.+.|.+|+..|.+.         +++.+.....|++|.+++.
T Consensus        12 ~~p~~IavIGaS~~~g~~-G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el~~~vDlvii~vp~   79 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKY-GNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPP   79 (138)
T ss_dssp             --CCEEEEETCCSCTTSH-HHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSCH
T ss_pred             cCCCeEEEEeecCCCCCH-HHHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHhCCCCCEEEEEeCH
Confidence            35789999999    664 9999999999999988888753         3566777789999999984

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=95.53  E-value=0.0072  Score=52.25  Aligned_cols=37  Identities=32%  Similarity=0.346  Sum_probs=34.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~   39 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDIN   39 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999998889999999999999999998775

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.53  E-value=0.013  Score=49.99  Aligned_cols=37  Identities=14%  Similarity=0.192  Sum_probs=33.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         1 m~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~   37 (236)
T 1ooe_A            1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSA   37 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCc
Confidence            3689999999988899999999999999999998864

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.53  E-value=0.016  Score=50.20  Aligned_cols=38  Identities=21%  Similarity=0.277  Sum_probs=34.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (256)
T 2d1y_A            3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP   40 (256)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            46899999999988899999999999999999998764

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=95.53  E-value=0.014  Score=50.40  Aligned_cols=37  Identities=11%  Similarity=0.082  Sum_probs=31.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++.+|+++|.|+++-+|+.++..|+++|++|+++.++
T Consensus         4 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~   40 (264)
T 3i4f_A            4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHS   40 (264)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             ccccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCC
Confidence            4578999999998888999999999999999988554

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=95.51  E-value=0.0086  Score=51.28  Aligned_cols=38  Identities=26%  Similarity=0.217  Sum_probs=34.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~   39 (247)
T 3lyl_A            2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQ   39 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999999988889999999999999999998763

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=95.51  E-value=0.0084  Score=54.86  Aligned_cols=70  Identities=20%  Similarity=0.283  Sum_probs=52.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------------------CCHhhhcCCCcEEEEecCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t----------------------------~~l~~~l~~ADIVIsa~g~  189 (272)
                      +|.|||.|.+ |.+++..|++.|.+|++++|+.                            .++.+.++++|+||.+++.
T Consensus        17 kI~iIG~G~m-G~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~   95 (366)
T 1evy_A           17 KAVVFGSGAF-GTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT   95 (366)
T ss_dssp             EEEEECCSHH-HHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH
T ss_pred             eEEEECCCHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh
Confidence            8999999885 9999999999999999998752                            1234567889999999974


Q ss_pred             Cc---cccC------CCcCC-CcEEEEee
Q 024116          190 AN---LVRG------SWLKP-GAVVLDVG  208 (272)
Q Consensus       190 p~---~i~~------~~vk~-g~vviDig  208 (272)
                      ..   .+..      ..+++ +.+|+|+.
T Consensus        96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~  124 (366)
T 1evy_A           96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCT  124 (366)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHTCCEEECC
T ss_pred             HHHHHHHHHhHHHHHHhcCccCCEEEEEC
Confidence            22   1221      23566 88888875

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=95.50  E-value=0.019  Score=46.28  Aligned_cols=54  Identities=13%  Similarity=0.095  Sum_probs=44.2

Q ss_pred             cceEEEEcCC---cccHHHHHHHHHhCCCEEEEEeCCC-----------CCHhhhcCCCcEEEEecCC
Q 024116          136 GKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHALT-----------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       136 gk~v~ViG~g---~~vG~~la~~L~~~ga~V~v~~~~t-----------~~l~~~l~~ADIVIsa~g~  189 (272)
                      -++|.|||+|   +..|..++..|.+.|.+|+.+|.+.           +++.+.....|++|.+++.
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el~~~~Dlvii~vp~   80 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFRNS   80 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCSSCCSEEECCSCS
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHcCCCCCEEEEEeCH
Confidence            5789999995   3459999999999999999888764           3566666788999999884

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=95.49  E-value=0.016  Score=50.97  Aligned_cols=34  Identities=15%  Similarity=0.205  Sum_probs=31.1

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +|+|+|-|++.=+|++++..|+++|++|.++.++
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~   35 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDID   35 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4899999988778999999999999999999876

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=95.48  E-value=0.009  Score=53.88  Aligned_cols=38  Identities=26%  Similarity=0.337  Sum_probs=34.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~   42 (319)
T 3ioy_A            5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQ   42 (319)
T ss_dssp             CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57899999999988889999999999999999998763

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=95.48  E-value=0.0093  Score=57.48  Aligned_cols=70  Identities=20%  Similarity=0.214  Sum_probs=50.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH-------------------------------------hhhcC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP-------------------------------------EQITS  178 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l-------------------------------------~~~l~  178 (272)
                      -++|.|||.|.+ |.+++..|++.|.+|++++++...+                                     .+.++
T Consensus         5 ~~kVgVIGaG~M-G~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (483)
T 3mog_A            5 VQTVAVIGSGTM-GAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHALA   83 (483)
T ss_dssp             CCCEEEECCSHH-HHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGGGG
T ss_pred             CCEEEEECcCHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHHhc
Confidence            368999999885 9999999999999999998763111                                     13578


Q ss_pred             CCcEEEEecCCCcccc-------CCCcCCCcEEEE
Q 024116          179 EADIVIAAAGVANLVR-------GSWLKPGAVVLD  206 (272)
Q Consensus       179 ~ADIVIsa~g~p~~i~-------~~~vk~g~vviD  206 (272)
                      +||+||.|++...-++       .+.++++++++.
T Consensus        84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~Ilas  118 (483)
T 3mog_A           84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTT  118 (483)
T ss_dssp             GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEe
Confidence            9999999997431111       123577877754

>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}

Probab=95.47  E-value=0.033  Score=52.80  Aligned_cols=156  Identities=17%  Similarity=0.136  Sum_probs=98.2

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCCCC--CHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-c----cc
Q 024116           22 SQTYVRNKIKACEEVGIKSIVTEFADGC--TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E----KD   94 (272)
Q Consensus        22 s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~--~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~----KD   94 (272)
                      |..=--+-..++.++|.++.++.-....  .-+-+.+.++-|+.-  +|+|.+--|...... ...+..+.. .    +.
T Consensus        71 STRTR~SFE~A~~~LGg~vi~l~~~~ss~~kGEsl~DTarvLs~y--~D~IviRh~~~~g~~-~~~~~~lA~~~~~~~~~  147 (418)
T 2yfk_A           71 STRTRFSFASACNLLGLEVQDLDEGKSQISHGETVRETANMISFM--ADIIGIRDDMYIGKG-NAYMHEVSESVQEGYKD  147 (418)
T ss_dssp             -CHHHHHHHHHHHHHTCEEEEECC--------CHHHHHHHHTTTT--EEEEEEEECSSTTHH-HHHHHHHHHHHHHHHHT
T ss_pred             CccHHHHHHHHHHHCCCeEEecCCCcccCCCCcCHHHHHHHHHHh--CcEEEEecccccCcc-hHHHHHHHHHHHhhhcc
Confidence            3333335567899999999877532100  134588888888875  789998877421111 212222211 0    00


Q ss_pred             -c--CccccccccccccCCCCCccccCCHHH-HHHHHHHhCC--CCccceEEEE-------cCCcccHHHHHHHHHhCCC
Q 024116           95 -V--DGFHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGV--EIMGKNAVVI-------GRSNIVGLPTSLLLQRHHA  161 (272)
Q Consensus        95 -v--dg~~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~--~l~gk~v~Vi-------G~g~~vG~~la~~L~~~ga  161 (272)
                       +  .....+|.|       .+.+.||=+.+ ++.+.++.|-  +++|++|+++       |+|..|.+.++..|...|+
T Consensus       148 ~~~~~~~PVINa~-------~~~~HPtQaLaDl~TI~E~~G~l~~l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~  220 (418)
T 2yfk_A          148 GVLEQRPTLVNLQ-------CDIDHPTQAMADALHLIHEFGGIENLKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGM  220 (418)
T ss_dssp             TSCSSCCEEEEEE-------ESSCCHHHHHHHHHHHHHHTTSSGGGTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTC
T ss_pred             cccCCCCeEEeCC-------CCccChHHHHHHHHHHHHHhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHHcCC
Confidence             0  112244642       23467998888 5666666653  2899999999       5555689999999999999


Q ss_pred             EEEEEeCC-------------------------CCCHhhhcCCCcEEEEec
Q 024116          162 TVSIVHAL-------------------------TKNPEQITSEADIVIAAA  187 (272)
Q Consensus       162 ~V~v~~~~-------------------------t~~l~~~l~~ADIVIsa~  187 (272)
                      +|+++.-.                         +.++.+.+++||+|.+-+
T Consensus       221 ~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~d~~eav~~ADVVytd~  271 (418)
T 2yfk_A          221 DVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTNSMAEAFKDADVVYPKS  271 (418)
T ss_dssp             EEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEEESCHHHHHTTCSEEEECC
T ss_pred             EEEEECCccccCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEEcc
Confidence            99999743                         235678899999999753

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.47  E-value=0.026  Score=51.84  Aligned_cols=56  Identities=20%  Similarity=0.411  Sum_probs=44.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC-------------------------CCHhhhcCCCcEEEEe
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-------------------------KNPEQITSEADIVIAA  186 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t-------------------------~~l~~~l~~ADIVIsa  186 (272)
                      ...+||.|||+|. +|.+++..|+.+|.  ++.+++...                         .+ .+.+++||+||.+
T Consensus        17 ~~~~kV~ViGaG~-vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d-~~~~~~aDiVvi~   94 (331)
T 4aj2_A           17 VPQNKITVVGVGA-VGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKD-YSVTANSKLVIIT   94 (331)
T ss_dssp             CCSSEEEEECCSH-HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSS-GGGGTTEEEEEEC
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCC-HHHhCCCCEEEEc
Confidence            4678999999976 59999999998885  788887531                         12 2568999999999


Q ss_pred             cCCCc
Q 024116          187 AGVAN  191 (272)
Q Consensus       187 ~g~p~  191 (272)
                      .|.|.
T Consensus        95 aG~~~   99 (331)
T 4aj2_A           95 AGARQ   99 (331)
T ss_dssp             CSCCC
T ss_pred             cCCCC
Confidence            99653

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=95.47  E-value=0.017  Score=51.49  Aligned_cols=33  Identities=18%  Similarity=0.238  Sum_probs=30.2

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      +|+|+|.|+++.+|+.++..|+++|++|+++.|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r   34 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEec
Confidence            589999999888999999999999999998865

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=95.46  E-value=0.016  Score=50.72  Aligned_cols=37  Identities=22%  Similarity=0.361  Sum_probs=34.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~   43 (281)
T 3s55_A            7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRC   43 (281)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            5799999999998888999999999999999999874

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.46  E-value=0.017  Score=52.36  Aligned_cols=71  Identities=17%  Similarity=0.238  Sum_probs=52.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------------------CCHhhhcCCCcEEEEecCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------------------~~l~~~l~~ADIVIsa~g~  189 (272)
                      ..+|.|||+|.+ |.+++..|++.|.+|+++.|..                          .++.+ +..+|+||.++..
T Consensus         3 ~mkI~IiGaG~~-G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~   80 (335)
T 3ghy_A            3 LTRICIVGAGAV-GGYLGARLALAGEAINVLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA   80 (335)
T ss_dssp             CCCEEEESCCHH-HHHHHHHHHHTTCCEEEECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH
T ss_pred             CCEEEEECcCHH-HHHHHHHHHHCCCEEEEEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc
Confidence            468999999875 9999999999999999998731                          12333 5789999999986


Q ss_pred             Ccc---cc--CCCcCCCcEEEEee
Q 024116          190 ANL---VR--GSWLKPGAVVLDVG  208 (272)
Q Consensus       190 p~~---i~--~~~vk~g~vviDig  208 (272)
                      +.+   ++  ...++++++|+.+-
T Consensus        81 ~~~~~~~~~l~~~l~~~~~iv~~~  104 (335)
T 3ghy_A           81 PALESVAAGIAPLIGPGTCVVVAM  104 (335)
T ss_dssp             HHHHHHHGGGSSSCCTTCEEEECC
T ss_pred             hhHHHHHHHHHhhCCCCCEEEEEC
Confidence            432   21  23567788888764

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=95.46  E-value=0.014  Score=49.70  Aligned_cols=37  Identities=24%  Similarity=0.321  Sum_probs=32.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEE-eCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV-HAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~-~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++ .++
T Consensus         2 ~l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~   39 (247)
T 2hq1_A            2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPA   39 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcC
Confidence            3689999999999889999999999999999988 444

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.46  E-value=0.0077  Score=52.25  Aligned_cols=36  Identities=22%  Similarity=0.156  Sum_probs=32.1

Q ss_pred             CCccceEEEEcC-C-cccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGR-S-NIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~-g-~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+ | + +|+.++..|+++|++|+++.|+
T Consensus        19 ~l~~k~vlITGasg~G-IG~~~a~~l~~~G~~V~~~~r~   56 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTG-IGSTTARRALLEGADVVISDYH   56 (266)
T ss_dssp             TTTTCEEEESSCSSSS-HHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCCCc-hHHHHHHHHHHCCCEEEEecCC
Confidence            478999999999 4 5 5999999999999999999875

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=95.46  E-value=0.013  Score=50.02  Aligned_cols=38  Identities=18%  Similarity=0.292  Sum_probs=34.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         7 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~   44 (255)
T 1fmc_A            7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN   44 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCC
Confidence            45789999999998889999999999999999999875

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=95.46  E-value=0.011  Score=51.35  Aligned_cols=37  Identities=27%  Similarity=0.290  Sum_probs=33.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   38 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            6799999999988889999999999999999988764

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=95.45  E-value=0.017  Score=50.45  Aligned_cols=39  Identities=10%  Similarity=0.187  Sum_probs=35.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus        27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~   65 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   65 (272)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCH
Confidence            568999999999999899999999999999999998763

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=95.45  E-value=0.013  Score=49.92  Aligned_cols=37  Identities=24%  Similarity=0.281  Sum_probs=34.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~   39 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRH   39 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999989999999999999999998875

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=95.44  E-value=0.017  Score=49.93  Aligned_cols=38  Identities=32%  Similarity=0.346  Sum_probs=34.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (260)
T 2z1n_A            4 GIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNR   41 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999999998899999999999999999998753

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=95.44  E-value=0.0071  Score=52.41  Aligned_cols=39  Identities=18%  Similarity=0.141  Sum_probs=34.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         3 ~~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~   41 (250)
T 3nyw_A            3 LEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSK   41 (250)
T ss_dssp             --CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            357899999999988889999999999999999998764

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=95.43  E-value=0.018  Score=51.59  Aligned_cols=54  Identities=19%  Similarity=0.157  Sum_probs=43.7

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCC-----CEEEEEeCCCC--------------------CHhhhcCC---CcEEEEec
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHH-----ATVSIVHALTK--------------------NPEQITSE---ADIVIAAA  187 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~g-----a~V~v~~~~t~--------------------~l~~~l~~---ADIVIsa~  187 (272)
                      |++|+|.|++|.+|+.++..|+++|     .+|+++.|...                    .+.+.++.   .|+||...
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~vih~a   80 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPDDSQAKLSPLTDVTHVFYVT   80 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSCCCSSCCEEEECCTTSHHHHHHHHTTCTTCCEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccccccCceEEEEeecCCHHHHHHHHhcCCCCCEEEECC
Confidence            5799999999999999999999999     89999877531                    13355666   89999887


Q ss_pred             CC
Q 024116          188 GV  189 (272)
Q Consensus       188 g~  189 (272)
                      +.
T Consensus        81 ~~   82 (364)
T 2v6g_A           81 WA   82 (364)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=95.43  E-value=0.013  Score=55.55  Aligned_cols=54  Identities=24%  Similarity=0.172  Sum_probs=45.2

Q ss_pred             cccCCHHHHHHH----HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE-EEeCC
Q 024116          115 FIPCTPKGCIEL----LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS-IVHAL  169 (272)
Q Consensus       115 ~~p~Ta~g~~~~----l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~-v~~~~  169 (272)
                      -.++|++|++..    +++.+.+++|++|+|.|.|+ ||..++.+|.+.|++|+ +++++
T Consensus       187 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaVqG~Gn-VG~~~a~~L~~~GakvVavsD~~  245 (421)
T 2yfq_A          187 RNEATGFGVAVVVRESAKRFGIKMEDAKIAVQGFGN-VGTFTVKNIERQGGKVCAIAEWD  245 (421)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTTCCGGGSCEEEECCSH-HHHHHHHHHHHTTCCEEECCBCC
T ss_pred             CCcchHHHHHHHHHHHHHhcCCCccCCEEEEECcCH-HHHHHHHHHHHCCCEEEEEEecC
Confidence            347899987655    55688999999999999988 59999999999999876 77766

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=95.43  E-value=0.0094  Score=55.92  Aligned_cols=72  Identities=18%  Similarity=0.249  Sum_probs=51.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC---CEEEEEeCCCC----------------------------CHhhhcCC--CcEE
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHH---ATVSIVHALTK----------------------------NPEQITSE--ADIV  183 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~g---a~V~v~~~~t~----------------------------~l~~~l~~--ADIV  183 (272)
                      ++|+|+|+|+ +|+.++..|++.|   ..|+++.|+..                            ++.+.+++  +|+|
T Consensus         2 ~kVlIiGaGg-iG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvV   80 (405)
T 4ina_A            2 AKVLQIGAGG-VGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIV   80 (405)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CEEEEECCCH-HHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEE
Confidence            5899999987 5999999999998   48999987631                            12344555  8999


Q ss_pred             EEecCCCc-c-ccCCCcCCCcEEEEeee
Q 024116          184 IAAAGVAN-L-VRGSWLKPGAVVLDVGT  209 (272)
Q Consensus       184 Isa~g~p~-~-i~~~~vk~g~vviDig~  209 (272)
                      |+++|... . +-...++.|..++|++.
T Consensus        81 in~ag~~~~~~v~~a~l~~g~~vvD~a~  108 (405)
T 4ina_A           81 LNIALPYQDLTIMEACLRTGVPYLDTAN  108 (405)
T ss_dssp             EECSCGGGHHHHHHHHHHHTCCEEESSC
T ss_pred             EECCCcccChHHHHHHHHhCCCEEEecC
Confidence            99988421 1 22334566888999743

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=95.42  E-value=0.0042  Score=56.51  Aligned_cols=93  Identities=20%  Similarity=0.109  Sum_probs=58.3

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-----------------CCHhhhc--
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------------KNPEQIT--  177 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-----------------~~l~~~l--  177 (272)
                      |+....++..|.+..---.|++|+|+|+++.+|..+++++...|++|+++ ++.                 .++.+.+  
T Consensus       132 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~~i~~~~~~~~~~~~  210 (343)
T 3gaz_A          132 PLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGATPIDASREPEDYAAE  210 (343)
T ss_dssp             HHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSEEEETTSCHHHHHHH
T ss_pred             hhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCCEeccCCCHHHHHHH
Confidence            33333344444222222369999999965567999999999999998877 331                 1222211  


Q ss_pred             ----CCCcEEEEecCCCcc-ccCCCcCCCcEEEEeeeC
Q 024116          178 ----SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       178 ----~~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~~  210 (272)
                          +.+|+||.++|.+.+ -.-+.++++-.++.+|..
T Consensus       211 ~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~g~~  248 (343)
T 3gaz_A          211 HTAGQGFDLVYDTLGGPVLDASFSAVKRFGHVVSCLGW  248 (343)
T ss_dssp             HHTTSCEEEEEESSCTHHHHHHHHHEEEEEEEEESCCC
T ss_pred             HhcCCCceEEEECCCcHHHHHHHHHHhcCCeEEEEccc
Confidence                358999999986432 122356776677777644

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=95.42  E-value=0.02  Score=50.86  Aligned_cols=37  Identities=24%  Similarity=0.141  Sum_probs=31.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      -.+++|+|.|++|.+|+.++..|+++|++|+++.|..
T Consensus        12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~   48 (335)
T 1rpn_A           12 SMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   48 (335)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             ccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4689999999999999999999999999999988753

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=95.41  E-value=0.0078  Score=52.17  Aligned_cols=37  Identities=32%  Similarity=0.306  Sum_probs=33.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   38 (260)
T 2qq5_A            2 PMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRH   38 (260)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999998889999999999999999998775

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.41  E-value=0.016  Score=52.92  Aligned_cols=52  Identities=10%  Similarity=0.135  Sum_probs=43.3

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC---------------------------------------CCCHhhh
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL---------------------------------------TKNPEQI  176 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~---------------------------------------t~~l~~~  176 (272)
                      -++|.|||+|-+ |..+|+.++..|..|++.+..                                       +.++.+.
T Consensus         6 ~~~VaViGaG~M-G~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a   84 (319)
T 3ado_A            6 AGDVLIVGSGLV-GRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA   84 (319)
T ss_dssp             -CEEEEECCSHH-HHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred             CCeEEEECCcHH-HHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence            468999999775 999999999999999999743                                       1355678


Q ss_pred             cCCCcEEEEecC
Q 024116          177 TSEADIVIAAAG  188 (272)
Q Consensus       177 l~~ADIVIsa~g  188 (272)
                      +++||+||-|+.
T Consensus        85 ~~~ad~ViEav~   96 (319)
T 3ado_A           85 VEGVVHIQECVP   96 (319)
T ss_dssp             TTTEEEEEECCC
T ss_pred             hccCcEEeeccc
Confidence            899999998886

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.41  E-value=0.017  Score=50.37  Aligned_cols=37  Identities=16%  Similarity=0.205  Sum_probs=33.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.+.
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~   43 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC   43 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence            5789999999998888999999999999999998764

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=95.41  E-value=0.017  Score=53.15  Aligned_cols=55  Identities=18%  Similarity=0.370  Sum_probs=43.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC-------------------------CCHhhhcCCCcEEEEec
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-------------------------KNPEQITSEADIVIAAA  187 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t-------------------------~~l~~~l~~ADIVIsa~  187 (272)
                      ..+||.|+|+|. +|.+++..|+..|.  +|.+++...                         .+. +.+++||+||.+.
T Consensus        20 ~~~kV~ViGaG~-vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~-~~~~daDiVIita   97 (330)
T 3ldh_A           20 SYNKITVVGCDA-VGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDY-SVSAGSKLVVITA   97 (330)
T ss_dssp             CCCEEEEESTTH-HHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSS-CSCSSCSEEEECC
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCH-HHhCCCCEEEEeC
Confidence            468999999966 59999999998885  788887531                         233 3489999999999


Q ss_pred             CCCc
Q 024116          188 GVAN  191 (272)
Q Consensus       188 g~p~  191 (272)
                      |.|.
T Consensus        98 G~p~  101 (330)
T 3ldh_A           98 GARQ  101 (330)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            8653

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=95.40  E-value=0.011  Score=50.79  Aligned_cols=36  Identities=17%  Similarity=0.115  Sum_probs=32.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+|+++|.|+++-+|+.++..|+++|++|.++.|+.
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~   37 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRY   37 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            579999999988889999999999999999998863

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=95.38  E-value=0.012  Score=53.84  Aligned_cols=74  Identities=18%  Similarity=0.217  Sum_probs=54.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---CCHh----------------hhc----CCCcEEEEecCCCcc
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---KNPE----------------QIT----SEADIVIAAAGVANL  192 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t---~~l~----------------~~l----~~ADIVIsa~g~p~~  192 (272)
                      |++|+|+|+|+ +|..+++++...|++|+++.++.   ..++                +.+    ..+|+||.++|.+..
T Consensus       181 g~~VlV~GaG~-vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  259 (366)
T 2cdc_A          181 CRKVLVVGTGP-IGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGADVN  259 (366)
T ss_dssp             TCEEEEESCHH-HHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCCTH
T ss_pred             CCEEEEECCCH-HHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCChHH
Confidence            99999999955 69999999999999999888765   3221                011    247999999998754


Q ss_pred             c-c--CCCcCCCcEEEEeeeC
Q 024116          193 V-R--GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       193 i-~--~~~vk~g~vviDig~~  210 (272)
                      + .  -+.++++-.++.+|..
T Consensus       260 ~~~~~~~~l~~~G~iv~~g~~  280 (366)
T 2cdc_A          260 ILGNVIPLLGRNGVLGLFGFS  280 (366)
T ss_dssp             HHHHHGGGEEEEEEEEECSCC
T ss_pred             HHHHHHHHHhcCCEEEEEecC
Confidence            4 2  3456777778888764

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=95.38  E-value=0.0092  Score=51.82  Aligned_cols=53  Identities=9%  Similarity=0.080  Sum_probs=42.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhC--CCEEEEEeCCCC---------------------CHhhhcCCCcEEEEecCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALTK---------------------NPEQITSEADIVIAAAGV  189 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~--ga~V~v~~~~t~---------------------~l~~~l~~ADIVIsa~g~  189 (272)
                      |+++|.|++|.+|+.++..|+++  |.+|+++.|+..                     ++.+.++.+|+||...+.
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   76 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGP   76 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCC
Confidence            57999999888999999999998  899999887532                     134566778888877663

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=95.38  E-value=0.017  Score=51.59  Aligned_cols=54  Identities=20%  Similarity=0.338  Sum_probs=43.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhC--CCEEEEEeCCCC--------------------------CHhhhcCCCcEEEEecC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALTK--------------------------NPEQITSEADIVIAAAG  188 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~--ga~V~v~~~~t~--------------------------~l~~~l~~ADIVIsa~g  188 (272)
                      ++|+|.|++|.+|+.++..|+++  |++|+++.|...                          .+.+.++.+|+||...|
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~   84 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAA   84 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhhcCCEEEECCc
Confidence            68999999888999999999998  889999876420                          12356778899998877


Q ss_pred             CC
Q 024116          189 VA  190 (272)
Q Consensus       189 ~p  190 (272)
                      ..
T Consensus        85 ~~   86 (348)
T 1oc2_A           85 ES   86 (348)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=95.37  E-value=0.014  Score=51.05  Aligned_cols=39  Identities=18%  Similarity=0.181  Sum_probs=32.9

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +.++.+|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus        11 ~~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   49 (266)
T 3p19_A           11 GRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARR   49 (266)
T ss_dssp             ----CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            345789999999998888999999999999999999876

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.37  E-value=0.025  Score=54.49  Aligned_cols=81  Identities=23%  Similarity=0.391  Sum_probs=60.5

Q ss_pred             HHHhCCCCccceEEEEcCC---------cccHHHHHHHHHhCCCEEEEEeCCC---------CCHhhhcCCCcEEEEecC
Q 024116          127 LIRSGVEIMGKNAVVIGRS---------NIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAG  188 (272)
Q Consensus       127 l~~~~~~l~gk~v~ViG~g---------~~vG~~la~~L~~~ga~V~v~~~~t---------~~l~~~l~~ADIVIsa~g  188 (272)
                      |...+.+++|++|.|+|-+         ++-...++..|.++|++|.+.+-.-         .++++.++.||.||.+|.
T Consensus       344 l~~~~~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~ad~vvi~t~  423 (478)
T 3g79_A          344 LERLGKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVVRNADAIVVLAG  423 (478)
T ss_dssp             HHTTTCCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBTTBCEESCHHHHHTTCSEEEECSC
T ss_pred             HhhcccCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccccCcceecCHHHHHhcCCEEEEecC
Confidence            3334568999999999932         2236789999999999999986432         467788999999999999


Q ss_pred             CCccc--cCCCc----C-CCcEEEEe
Q 024116          189 VANLV--RGSWL----K-PGAVVLDV  207 (272)
Q Consensus       189 ~p~~i--~~~~v----k-~g~vviDi  207 (272)
                      .+.|-  +.+.+    + +..+|+|.
T Consensus       424 ~~~f~~~d~~~~~~~~~~~~~~i~D~  449 (478)
T 3g79_A          424 HSAYSSLKADWAKKVSAKANPVIIDG  449 (478)
T ss_dssp             CHHHHSCCHHHHHHHHCCSSCEEEES
T ss_pred             CHHHHhhhHHHHHHHhccCCCEEEEC
Confidence            88763  33333    3 36789994

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=95.37  E-value=0.019  Score=50.40  Aligned_cols=38  Identities=24%  Similarity=0.218  Sum_probs=34.8

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|.
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   64 (273)
T 3uf0_A           27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT   64 (273)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH
Confidence            57899999999998888999999999999999998865

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=95.36  E-value=0.023  Score=50.33  Aligned_cols=53  Identities=15%  Similarity=0.195  Sum_probs=42.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------CHhhhcC--CCcEEEEecCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITS--EADIVIAAAGV  189 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~---------------------~l~~~l~--~ADIVIsa~g~  189 (272)
                      ++|+|.|++|.+|+.++..|+++|.+|+++.|...                     .+.+.++  ..|+||...|.
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~~   77 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAAD   77 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCTTSEEEECCTTCHHHHHHHHHHSCEEEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhhcCCCcEEEECCCCCHHHHHHHHhhcCCCEEEECCcc
Confidence            68999999998999999999999999999876421                     1234455  78999987764

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=95.35  E-value=0.016  Score=53.79  Aligned_cols=38  Identities=13%  Similarity=0.023  Sum_probs=33.6

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK  171 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~  171 (272)
                      ..+++|+|.|++|.+|+.++..|.+.|++|+++.|...
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~  104 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADN  104 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSS
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCC
Confidence            46789999999998999999999999999999877654

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=95.35  E-value=0.019  Score=50.16  Aligned_cols=38  Identities=21%  Similarity=0.210  Sum_probs=34.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.+.
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   46 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLC   46 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecc
Confidence            46899999999998888999999999999999998764

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.34  E-value=0.0096  Score=52.25  Aligned_cols=38  Identities=26%  Similarity=0.415  Sum_probs=34.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (280)
T 1xkq_A            3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSS   40 (280)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46899999999988899999999999999999998763

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=95.33  E-value=0.016  Score=50.48  Aligned_cols=52  Identities=12%  Similarity=0.066  Sum_probs=43.2

Q ss_pred             eEEEEcCCcccHHHHHHHHHhC-CCEEEEEeCCCC---------------------CHhhhcCCCcEEEEecCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALTK---------------------NPEQITSEADIVIAAAGV  189 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~-ga~V~v~~~~t~---------------------~l~~~l~~ADIVIsa~g~  189 (272)
                      +|+|.|++|.+|+.++..|.+. |.+|+++.|+..                     ++.+.++.+|+||...|.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   75 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI   75 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            6999999888999999999998 899999887531                     245678899999988774

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=95.33  E-value=0.01  Score=50.89  Aligned_cols=34  Identities=32%  Similarity=0.322  Sum_probs=30.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEE
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV  166 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~  166 (272)
                      .++||+++|.|+++-+|+.++..|+++|++|.+.
T Consensus         4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~   37 (255)
T 3icc_A            4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIH   37 (255)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence            3689999999998888999999999999999885

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=95.32  E-value=0.02  Score=50.14  Aligned_cols=38  Identities=24%  Similarity=0.181  Sum_probs=34.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         5 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   42 (270)
T 1yde_A            5 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKD   42 (270)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999999889999999999999999999876

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=95.32  E-value=0.018  Score=52.09  Aligned_cols=53  Identities=15%  Similarity=0.282  Sum_probs=41.5

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC-C-EEEEEeCCC-------------------------CCHhhhcCCCcEEEEecCCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHH-A-TVSIVHALT-------------------------KNPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~g-a-~V~v~~~~t-------------------------~~l~~~l~~ADIVIsa~g~p  190 (272)
                      ||.|||+|+ ||.+++..|+.++ + ++.+++...                         .+..+.+++||+||.+.|.|
T Consensus         2 KV~IiGaG~-VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitAG~p   80 (294)
T 2x0j_A            2 KLGFVGAGR-VGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA   80 (294)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             EEEEECcCH-HHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEecCCC
Confidence            799999988 5999999988877 3 788886431                         12257899999999999965


Q ss_pred             c
Q 024116          191 N  191 (272)
Q Consensus       191 ~  191 (272)
                      .
T Consensus        81 r   81 (294)
T 2x0j_A           81 R   81 (294)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=95.31  E-value=0.015  Score=51.05  Aligned_cols=54  Identities=13%  Similarity=0.169  Sum_probs=43.3

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhC--CCEEEEEeCCCC-------------------CHhhhcC--CCcEEEEecCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALTK-------------------NPEQITS--EADIVIAAAGV  189 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~--ga~V~v~~~~t~-------------------~l~~~l~--~ADIVIsa~g~  189 (272)
                      +++|+|.|++|.+|+.++..|+++  |.+|+++.|+..                   ++.+.++  ..|+||...+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~   78 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNSGPFEVVNALDFNQIEHLVEVHKITDIYLMAAL   78 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHHHHSSCEEECCTTCHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccccCCCceEEecCCCHHHHHHHHhhcCCCEEEECCcc
Confidence            578999999888999999999998  889999877532                   1234555  78999988774

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=95.31  E-value=0.021  Score=49.66  Aligned_cols=36  Identities=17%  Similarity=0.225  Sum_probs=30.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      ++.+|+++|.|+++-+|+.++..|+++|++|.++.+
T Consensus        23 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~   58 (267)
T 4iiu_A           23 NAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYH   58 (267)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence            468999999999888999999999999999977543

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=95.31  E-value=0.0067  Score=53.68  Aligned_cols=37  Identities=32%  Similarity=0.431  Sum_probs=33.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~   41 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARN   41 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            5789999999998888999999999999999998775

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=95.31  E-value=0.017  Score=52.84  Aligned_cols=55  Identities=20%  Similarity=0.234  Sum_probs=43.5

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC------------------------CCHhhhcCCCcEEEEecC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT------------------------KNPEQITSEADIVIAAAG  188 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t------------------------~~l~~~l~~ADIVIsa~g  188 (272)
                      ..+||.|||+|. +|.+++..|+..|.  +|++++...                        .+..+.+++||+||.++|
T Consensus         4 ~~~kI~ViGaG~-vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag   82 (326)
T 3pqe_A            4 HVNKVALIGAGF-VGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAG   82 (326)
T ss_dssp             SCCEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCS
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEecc
Confidence            457899999977 59999999998885  888887541                        012467899999999998


Q ss_pred             CC
Q 024116          189 VA  190 (272)
Q Consensus       189 ~p  190 (272)
                      .|
T Consensus        83 ~p   84 (326)
T 3pqe_A           83 AN   84 (326)
T ss_dssp             CC
T ss_pred             cC
Confidence            65

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=95.31  E-value=0.02  Score=50.42  Aligned_cols=38  Identities=24%  Similarity=0.228  Sum_probs=34.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+.
T Consensus        23 ~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~   60 (302)
T 1w6u_A           23 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   60 (302)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999999998899999999999999999998763

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=95.30  E-value=0.025  Score=53.98  Aligned_cols=68  Identities=22%  Similarity=0.265  Sum_probs=50.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------------------------CHhhhcCCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------------------------NPEQITSEA  180 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~------------------------------------~l~~~l~~A  180 (272)
                      ++|.|||+|.+ |.+++..|+..|.+|++++++..                                    ++ +.+++|
T Consensus        38 ~kV~VIGaG~M-G~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a  115 (463)
T 1zcj_A           38 SSVGVLGLGTM-GRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV  115 (463)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred             CEEEEECcCHH-HHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence            68999999885 99999999999999999986531                                    12 346789


Q ss_pred             cEEEEecCCCc-----ccc--CCCcCCCcEEEE
Q 024116          181 DIVIAAAGVAN-----LVR--GSWLKPGAVVLD  206 (272)
Q Consensus       181 DIVIsa~g~p~-----~i~--~~~vk~g~vviD  206 (272)
                      |+||.|++..-     ++.  ...+++++++++
T Consensus       116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~s  148 (463)
T 1zcj_A          116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCT  148 (463)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEe
Confidence            99999997531     111  124577888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	272
d1a4ia1	170	c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehy	1e-51
d1b0aa1	166	c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehy	2e-48
d1edza2	146	c.58.1.2 (A:3-148) Tetrahydrofolate dehydrogenase/	1e-36
d1edza1	171	c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehy	2e-35
d1a4ia2	125	c.58.1.2 (A:2-126) Tetrahydrofolate dehydrogenase/	2e-24
d1b0aa2	121	c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/	4e-24

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  164 bits (416), Expect = 1e-51
 Identities = 82/170 (48%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 98  FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ 157
              +N G LA       FIPCTPKGC+EL+  +GV I G++AVV+GRS IVG P   LL 
Sbjct: 1   LTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLL 60

Query: 158 RHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVD 217
            ++ATV+  H+ T + ++  ++ DI++ A G   +V+G W+KPGA+V+D G   V    D
Sbjct: 61  WNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVP---D 117

Query: 218 PSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 267
                G +++GDV Y+EA   AS ITPVPGGVGPMTVAML+ +T++SAKR
Sbjct: 118 DKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKR 167

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

 Score =  156 bits (395), Expect = 2e-48
 Identities = 75/172 (43%), Positives = 100/172 (58%), Gaps = 11/172 (6%)

Query: 98  FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ 157
           FHP N+G L  R   P   PCTP+G + LL R  ++  G NAVVIG SNIVG P S+ L 
Sbjct: 1   FHPYNVGRLCQR--APRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELL 58

Query: 158 RHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVD 217
               T ++ H  TKN       AD++I A G    + G W+K GA+V+DVG   ++    
Sbjct: 59  LAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLE---- 114

Query: 218 PSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 269
                  +++GDV +E+A + AS ITPVPGGVGPMTVA L+ NTL +    +
Sbjct: 115 -----NGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYH 161

>d1edza2 c.58.1.2 (A:3-148) Tetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 146

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  125 bits (314), Expect = 1e-36
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 2   KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNY 61
           K   G+ P L   L      ++ Y     K  E +G +  +        +D +  A+   
Sbjct: 28  KTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDLRVI---EDKDFLEEAIIQA 84

Query: 62  NQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPK 121
           N D S+NGI+V  P+  +  +  +   V  EKDV+G + +   NL               
Sbjct: 85  NGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEGLNHVYYQNLYH--NVRYLDKENRL 142

Query: 122 GCI 124
             I
Sbjct: 143 KSI 145

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  123 bits (309), Expect = 2e-35
 Identities = 42/186 (22%), Positives = 65/186 (34%), Gaps = 56/186 (30%)

Query: 117 PCTPKGCIELL---------IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVH 167
           PCTP   +++L         +  G  + GK  +VI RS IVG P + LL    ATV  V 
Sbjct: 1   PCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVD 60

Query: 168 ALTKN-------------------------PEQITSEADIVIAAAGVAN-LVRGSWLKPG 201
                                          ++ + ++D+VI      N      ++K G
Sbjct: 61  VNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEG 120

Query: 202 AVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNT 261
           AV ++                          ++    AS+  P+ G V   T+AMLL N 
Sbjct: 121 AVCINFACT------------------KNFSDDVKEKASLYVPMTGKV---TIAMLLRNM 159

Query: 262 LDSAKR 267
           L   + 
Sbjct: 160 LRLVRN 165

>d1a4ia2 c.58.1.2 (A:2-126) Tetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.8 bits (230), Expect = 2e-24
 Identities = 39/98 (39%), Positives = 64/98 (65%), Gaps = 2/98 (2%)

Query: 2   KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNY 61
           ++  G  P LA++ VG R DS  Y+  K+KA EE+GIK+   +     TE EV+  +++ 
Sbjct: 28  EQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSL 87

Query: 62  NQDSSINGILVQLPLPQH--LDEGKILDAVSLEKDVDG 97
           N+DS+++G LVQLPL     ++  ++++A++ EKDVDG
Sbjct: 88  NEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDG 125

>d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

 Score = 92.0 bits (228), Expect = 4e-24
 Identities = 44/97 (45%), Positives = 61/97 (62%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
              +  + PGLAV+LVG    SQ YV +K KACEEVG  S   +  +  +E E+L  +  
Sbjct: 25  RIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDT 84

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG 97
            N D++I+GILVQLPLP  +D  K+L+ +  +KDVDG
Sbjct: 85  LNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDG 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	272
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	100.0
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	100.0
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	100.0
d1edza2	146	Tetrahydrofolate dehydrogenase/cyclohydrolase {Bak	100.0
d1b0aa2	121	Tetrahydrofolate dehydrogenase/cyclohydrolase {Esc	99.96
d1a4ia2	125	Tetrahydrofolate dehydrogenase/cyclohydrolase {Hum	99.95
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	99.76
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	99.73
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	99.7
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	99.7
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	99.67
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	99.38
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.32
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.28
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.81
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	98.7
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.56
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	98.47
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	98.37
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	98.29
d1vi2a2	102	Putative shikimate dehydrogenase YdiB {Escherichia	98.27
d1npya2	102	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	98.27
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	98.23
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	98.2
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	98.2
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	98.17
d1p77a2	101	Shikimate 5-dehydrogenase AroE {Haemophilus influe	98.12
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.09
d1nyta2	101	Shikimate 5-dehydrogenase AroE {Escherichia coli [	98.09
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.09
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	98.08
d1nvta2	110	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	98.04
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.92
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.91
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.87
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.75
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.67
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.62
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.6
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.57
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.57
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.38
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.31
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.31
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.31
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.21
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.18
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.17
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.16
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.14
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.14
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	97.13
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	97.11
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.1
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.09
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.09
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	97.09
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.06
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.06
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	97.05
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.02
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.01
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.01
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	96.98
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	96.97
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.97
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	96.96
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.96
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	96.95
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.94
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.93
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.92
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.92
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.9
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.89
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.89
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	96.88
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.88
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	96.87
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.86
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	96.86
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.84
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	96.83
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.82
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.81
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	96.79
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.79
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.79
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.79
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	96.79
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.78
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.77
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	96.77
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.77
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	96.76
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.75
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.75
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.74
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	96.74
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	96.73
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.73
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.72
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.71
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.68
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	96.67
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	96.67
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.67
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	96.66
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.64
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.64
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.63
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.63
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	96.62
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.59
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.57
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	96.56
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.55
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	96.53
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.51
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.49
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	96.48
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.48
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	96.47
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.47
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.47
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.46
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.45
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.44
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.43
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.41
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.41
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.39
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.36
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.36
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.35
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	96.35
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	96.35
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	96.34
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	96.33
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	96.32
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.3
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.29
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	96.29
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	96.25
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.23
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.22
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	96.22
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	96.16
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	96.11
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.11
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.1
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	96.08
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	96.07
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.05
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	96.01
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	96.0
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	96.0
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.95
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	95.92
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.91
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.88
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.85
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	95.82
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	95.82
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.81
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	95.78
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	95.77
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	95.77
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	95.77
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	95.76
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	95.74
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.7
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.7
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	95.66
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	95.64
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	95.62
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	95.62
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.61
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	95.61
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.58
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	95.58
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	95.57
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.55
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.47
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.45
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.4
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	95.39
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.33
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	95.29
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.27
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.22
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	95.22
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	95.22
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	95.18
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	95.18
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	95.17
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	95.14
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.07
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	95.06
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	95.05
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.04
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	95.03
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.02
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.95
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.93
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.87
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	94.86
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	94.83
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	94.79
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.74
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.66
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.65
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	94.65
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.6
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.59
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.58
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	94.58
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	94.57
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.55
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.43
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	94.41
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	94.41
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	94.39
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	94.31
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	94.26
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.21
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	94.19
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	94.12
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	94.12
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	94.06
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.06
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	94.0
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.98
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	93.97
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	93.87
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	93.85
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	93.78
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.72
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	93.64
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	93.58
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	93.43
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	93.39
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	93.37
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	93.32
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	93.31
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	93.23
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	93.14
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.03
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	93.01
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	93.0
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	92.89
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	92.89
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	92.86
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.77
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	92.77
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.66
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	92.59
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	92.55
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	92.55
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	92.47
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	92.46
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	92.39
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	92.38
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.35
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.29
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	92.26
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	92.26
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	92.21
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	92.15
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	92.15
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	91.96
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.91
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	91.87
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	91.76
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	91.64
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	91.57
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	91.48
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	91.28
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.25
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	91.08
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	91.05
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	91.0
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	90.88
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	90.81
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	90.72
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	90.61
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	90.51
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	90.49
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	90.49
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	90.48
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	90.44
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	90.44
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	90.4
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	90.32
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	90.13
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	89.63
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	89.26
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	89.14
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	89.12
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	89.01
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	88.99
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	88.47
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	88.46
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	88.42
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.38
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	88.28
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.17
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	87.97
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	87.91
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	87.78
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	87.74
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	87.54
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	87.32
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	87.28
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	87.26
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	87.23
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	87.16
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	86.81
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	86.52
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	86.51
d1f4pa_	147	Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]}	86.14
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	86.04
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	85.96
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	85.84
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	85.48
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	85.43
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	85.39
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	85.38
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	85.28
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	85.1
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	85.03
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	84.97
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	84.71
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	84.47
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	84.38
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	84.05
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	83.69
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	83.13
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	82.78
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	82.76
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	82.71
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	82.47
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	81.93
d2ax3a2	211	Hypothetical protein TM0922, N-terminal domain {Th	81.9
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	81.79
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	81.69
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	81.69
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	81.55
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	80.5
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	80.23

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.2e-53  Score=358.09  Aligned_cols=162  Identities=46%  Similarity=0.790  Sum_probs=156.8

Q ss_pred             cccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhhhc
Q 024116           98 FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQIT  177 (272)
Q Consensus        98 ~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l~~~l  177 (272)
                      |||.|+|+|..+  .+.|+||||+|++++|++|+++++||+|+|||||..||+|++++|.++||+|++||++|+++++.+
T Consensus         1 fhp~N~G~l~~~--~~~~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~~~~   78 (166)
T d1b0aa1           1 FHPYNVGRLCQR--APRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHV   78 (166)
T ss_dssp             CSHHHHHHHHTT--CCSSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHH
T ss_pred             CCchhHHHHhCC--CCCCCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHHhhccccccccccchhHHHH
Confidence            699999999976  688999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEeccCCCcccHHHHHHH
Q 024116          178 SEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAML  257 (272)
Q Consensus       178 ~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL  257 (272)
                      ++|||||+|+|+|++++++|+|+|++|||+|+++.+         +++++||+||+++.++++++|||||||||+|++||
T Consensus        79 ~~ADivI~a~G~p~~i~~~~vk~g~vvIDvGi~~~~---------~~~~~Gdvd~~~v~~~a~~~TPvPGGVGP~Tva~L  149 (166)
T d1b0aa1          79 ENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLE---------NGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATL  149 (166)
T ss_dssp             HHCSEEEECSCCTTCBCTTTSCTTCEEEECCCEECT---------TSCEECSBCHHHHHHHCSEECCSSSSSHHHHHHHH
T ss_pred             hhhhHhhhhccCcccccccccCCCcEEEecCceecC---------CCCEEeccccHhHHhheeEeCCCCCcccHHHHHHH
Confidence            999999999999999999999999999999999876         36899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhC
Q 024116          258 LSNTLDSAKRAYG  270 (272)
Q Consensus       258 ~~n~v~a~~~~~~  270 (272)
                      |+|+++|+++|+.
T Consensus       150 ~~N~v~a~~~~~~  162 (166)
T d1b0aa1         150 IENTLQACVEYHD  162 (166)
T ss_dssp             HHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999986

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-53  Score=356.63  Aligned_cols=169  Identities=49%  Similarity=0.821  Sum_probs=155.0

Q ss_pred             cccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhhhc
Q 024116           98 FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQIT  177 (272)
Q Consensus        98 ~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l~~~l  177 (272)
                      +|++|.|+|..|+..++|+||||.|++++|++|+++++||+|+|||||..||||++++|+++||+|++||++|+++.+.+
T Consensus         1 l~~~N~G~l~~g~~~~~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~~~~   80 (170)
T d1a4ia1           1 LTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEV   80 (170)
T ss_dssp             CSHHHHHHHHTTCCSSCCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHH
T ss_pred             CCccchhhHhcCCCCCCCCCChHHHHHHHHHHhCcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccHHHHH
Confidence            58999999998865789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEecCCCccccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEeccCCCcccHHHHHHH
Q 024116          178 SEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAML  257 (272)
Q Consensus       178 ~~ADIVIsa~g~p~~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~amL  257 (272)
                      ++|||+|+|+|+|++++++|+++|++|||+|+++.+   ++..+.+++++||+||+++.++++++|||||||||+|++||
T Consensus        81 ~~aDivi~a~G~~~~i~~~~vk~g~iviDvgi~~~~---~~~~~~~~~~~gdvd~~~v~~~a~~~TPvPGGVGp~Tva~L  157 (170)
T d1a4ia1          81 NKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVP---DDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAML  157 (170)
T ss_dssp             TTCSEEEECCCCTTCBCGGGSCTTCEEEECCCBC-------------CCBCSBCHHHHTTTCSEECCSSSSHHHHHHHHH
T ss_pred             hhccchhhccccccccccccccCCCeEeccCccccc---ccccCCCCEEecccchHhhhhhceEeCCCCCchhHHHHHHH
Confidence            999999999999999999999999999999999876   33223356899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 024116          258 LSNTLDSAKRAY  269 (272)
Q Consensus       258 ~~n~v~a~~~~~  269 (272)
                      |+|+++++|||+
T Consensus       158 ~~N~v~a~~r~l  169 (170)
T d1a4ia1         158 MQSTVESAKRFL  169 (170)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999999997

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.2e-39  Score=270.16  Aligned_cols=132  Identities=31%  Similarity=0.450  Sum_probs=121.1

Q ss_pred             cCCHHHHHHHHHHhCC---------CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------------
Q 024116          117 PCTPKGCIELLIRSGV---------EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------  171 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~---------~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~----------------  171 (272)
                      ||||.|++++|++|++         +++||+|+|||||.+||||++.+|+++||+|++||+++.                
T Consensus         1 PcTp~gv~~LL~~y~I~~~~~~~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1edza1           1 PCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHV   80 (171)
T ss_dssp             CHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEE
T ss_pred             CCcHHHHHHHHHHcCcccccccccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeecc
Confidence            9999999999999998         999999999999999999999999999999999997642                


Q ss_pred             ---------CHhhhcCCCcEEEEecCCCcc-ccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceE
Q 024116          172 ---------NPEQITSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASV  241 (272)
Q Consensus       172 ---------~l~~~l~~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~  241 (272)
                               .+++.+++|||||+|+|.|++ ++.||+|+|++|||+|++++.                  ++++.+++++
T Consensus        81 ~~~~~~~~~~lk~~~~~aDIvIsavG~p~~~i~~d~ik~GavvIDvGi~~~~------------------~~~v~~~a~~  142 (171)
T d1edza1          81 EDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTKNF------------------SDDVKEKASL  142 (171)
T ss_dssp             EEEEECCHHHHHHHHHHCSEEEECCCCTTCCBCTTTSCTTEEEEECSSSCCB------------------CGGGGTTEEE
T ss_pred             ccccccchhHHhhccccCCEEEEccCCCccccChhhcccCceEeeccccccc------------------ccchhheeeE
Confidence                     167778899999999999998 999999999999999988643                  1566889999


Q ss_pred             eccCCCcccHHHHHHHHHHHHHHHHHHh
Q 024116          242 ITPVPGGVGPMTVAMLLSNTLDSAKRAY  269 (272)
Q Consensus       242 ~tpvpGGvGp~T~amL~~n~v~a~~~~~  269 (272)
                      +|||||||   |++|||+|+++++|+|.
T Consensus       143 iTPVPGGV---TvamLl~N~v~a~~~~~  167 (171)
T d1edza1         143 YVPMTGKV---TIAMLLRNMLRLVRNVE  167 (171)
T ss_dssp             EESCCHHH---HHHHHHHHHHHHHHHHH
T ss_pred             EcCCCCHH---HHHHHHHHHHHHHHHHH
Confidence            99999997   99999999999999875

>d1edza2 c.58.1.2 (A:3-148) Tetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.4e-35  Score=239.69  Aligned_cols=115  Identities=23%  Similarity=0.262  Sum_probs=107.2

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHH
Q 024116            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (272)
Q Consensus         5 ~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~   84 (272)
                      .|++|+|++|+||+||+|..|+++|.|+|+++||+++...   ..+++|+++.|++||+|++||||+||+|||+|+++++
T Consensus        31 ~g~~P~Lavilvg~d~aS~~Yv~~k~k~a~~~Gi~~~l~~---~~~~~~l~~~I~~LN~D~~V~GIlvQlPLP~~i~~~~  107 (146)
T d1edza2          31 NGQGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDLRV---IEDKDFLEEAIIQANGDDSVNGIMVYFPVFGNAQDQY  107 (146)
T ss_dssp             TTCCCEEEEEECCCCHHHHHHHHHHHHHHHHHTCEEEEEE---CSSGGGHHHHHHHHHHCTTCCEEEECSCSSSSHHHHH
T ss_pred             CCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCccccCc---cchHHHHHHHHHHHhcchhhhhhhhcCCCCcccCHHH
Confidence            4789999999999999999999999999999999986544   5578999999999999999999999999999999999


Q ss_pred             HHhcCCcccccCccccccccccccCCCCCccccCCHHHHH
Q 024116           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCI  124 (272)
Q Consensus        85 i~~~i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~  124 (272)
                      ++++|+|.|||||+|+.|.|+|+.|  .+++.||||.+|+
T Consensus       108 i~~~I~p~KDVDGl~p~N~G~L~~~--~~~l~P~t~~~~i  145 (146)
T d1edza2         108 LQQVVCKEKDVEGLNHVYYQNLYHN--VRYLDKENRLKSI  145 (146)
T ss_dssp             HTTTSCTTTBTTCCSHHHHHHHHTT--CCBSSSSSCSBCC
T ss_pred             HHHhcCCCCCcCCCChHhHHHHHcC--CCCCCCCCccCcc
Confidence            9999999999999999999999976  7788999998753

>d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=3.6e-29  Score=199.30  Aligned_cols=95  Identities=46%  Similarity=0.732  Sum_probs=92.2

Q ss_pred             CCCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCH
Q 024116            3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDE   82 (272)
Q Consensus         3 ~~~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~   82 (272)
                      ++.+.+|+||+|++|+||+|..|++.|.|+|+++||+++.+.||++++|+||++.|++||+|++||||+||+|||+|+++
T Consensus        27 ~~~~~~P~LavI~vg~d~aS~~Yv~~k~k~a~~lGi~~~~~~l~~~~t~~~l~~~I~~lN~d~~v~GIlvqlPLP~~i~~  106 (121)
T d1b0aa2          27 AAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDN  106 (121)
T ss_dssp             HTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEECCEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCH
T ss_pred             HcCCCCceEEEEEeCCChhHHHHHHHHHHHHHhhccceeeeeccccccHHHHHHHHHHHhCCCchhhhhhcCCCCCCcCH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccccCc
Q 024116           83 GKILDAVSLEKDVDG   97 (272)
Q Consensus        83 ~~i~~~i~p~KDvdg   97 (272)
                      .+++++|+|.|||||
T Consensus       107 ~~i~~~I~p~KDVDG  121 (121)
T d1b0aa2         107 VKVLERIHPDKDVDG  121 (121)
T ss_dssp             HHHHTTSCTTTCTTC
T ss_pred             HHHHhccCcCcCCCC
Confidence            999999999999998

>d1a4ia2 c.58.1.2 (A:2-126) Tetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.6e-28  Score=196.59  Aligned_cols=93  Identities=42%  Similarity=0.716  Sum_probs=90.9

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCC--CCH
Q 024116            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQH--LDE   82 (272)
Q Consensus         5 ~~~~p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~--~~~   82 (272)
                      .|++|+|++|+||+||+|..|+++|.|+|+++||+++.+.||++++++|+++.|++||+|++||||+||+|||.|  +++
T Consensus        31 ~g~~P~LavIlvg~d~aS~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~  110 (125)
T d1a4ia2          31 PGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINT  110 (125)
T ss_dssp             TTCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCH
T ss_pred             CCCCceEEEEEcCCChhHHHHHHHHHHHHHhccceEEEEecCcchhHHHHHHHHHHHhccCCcceEEEecCCCCCCCcCH
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999986  999


Q ss_pred             HHHHhcCCcccccCc
Q 024116           83 GKILDAVSLEKDVDG   97 (272)
Q Consensus        83 ~~i~~~i~p~KDvdg   97 (272)
                      .+++++|+|.|||||
T Consensus       111 ~~i~~~I~p~KDVDG  125 (125)
T d1a4ia2         111 EEVINAIAPEKDVDG  125 (125)
T ss_dssp             HHHHHTSCGGGBTTC
T ss_pred             HHHHhcCCCCcCCCC
Confidence            999999999999998

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=2.1e-18  Score=143.17  Aligned_cols=130  Identities=18%  Similarity=0.159  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC------------------H-hhhcCCC
Q 024116          120 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN------------------P-EQITSEA  180 (272)
Q Consensus       120 a~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~------------------l-~~~l~~A  180 (272)
                      ..|+++.|++.+++++||+|+|+|+||+ +|+++..|.+.|++|++++|+.+.                  + .....++
T Consensus         2 g~Gf~~~l~~~~~~~~~k~vlIlGaGGa-arai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~   80 (170)
T d1nyta1           2 GVGLLSDLERLSFIRPGLRILLIGAGGA-SRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEF   80 (170)
T ss_dssp             HHHHHHHHHHHTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCC
T ss_pred             HhHHHHHHHHcCCCCCCCEEEEECCcHH-HHHHHHHhcccceEEEeccchHHHHHHHHHHHhhccccccccccccccccc
Confidence            3799999999999999999999999998 999999999999999999997411                  1 1124578


Q ss_pred             cEEEEecCC---Cc--cccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEeccCCCcccHHHHH
Q 024116          181 DIVIAAAGV---AN--LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVA  255 (272)
Q Consensus       181 DIVIsa~g~---p~--~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~a  255 (272)
                      |+||++|+.   +.  .++.+.++++.+|+|+.|+|.+          |+|+     +. ++..++.+ +-+|.+     
T Consensus        81 dliIN~Tp~G~~~~~~~~~~~~~~~~~~v~D~vY~P~~----------T~ll-----~~-A~~~G~~~-~i~Gl~-----  138 (170)
T d1nyta1          81 DLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGK----------TPFL-----AW-CEQRGSKR-NADGLG-----  138 (170)
T ss_dssp             SEEEECCSCGGGTCCCCCCGGGCCTTCEEEESCCCSSC----------CHHH-----HH-HHHTTCCE-EECTHH-----
T ss_pred             ceeecccccCcccCCCCCcHHHhccCcEEEEeecCCCC----------CHHH-----HH-HHHcCCCc-ccCCHH-----
Confidence            999998863   22  3566778999999999999976          6677     55 55556522 445676     


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 024116          256 MLLSNTLDSAKRAYGFT  272 (272)
Q Consensus       256 mL~~n~v~a~~~~~~~~  272 (272)
                      ||++|++++|+.|+|.+
T Consensus       139 MLi~Qa~~~f~lwtG~~  155 (170)
T d1nyta1         139 MLVAQAAHAFLLWHGVL  155 (170)
T ss_dssp             HHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHhCCC
Confidence            99999999999999963

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=6.3e-18  Score=141.66  Aligned_cols=129  Identities=22%  Similarity=0.233  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCCCH-------------------------
Q 024116          120 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTKNP-------------------------  173 (272)
Q Consensus       120 a~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t~~l-------------------------  173 (272)
                      ..|+++.|++.+++++||+|+|+|+|++ ||+++..|...|+ ++++++|+.+.+                         
T Consensus         2 ~~Gf~~~l~~~~~~l~~k~vlIlGaGGa-arai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   80 (182)
T d1vi2a1           2 GTGHIRAIKESGFDIKGKTMVLLGAGGA-STAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLAD   80 (182)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC
T ss_pred             HHHHHHHHHHcCCCcCCCEEEEECCcHH-HHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeeccc
Confidence            3799999999999999999999999997 9999999999997 899999975322                         


Q ss_pred             ----hhhcCCCcEEEEecCC---Cc----c-ccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceE
Q 024116          174 ----EQITSEADIVIAAAGV---AN----L-VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASV  241 (272)
Q Consensus       174 ----~~~l~~ADIVIsa~g~---p~----~-i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~  241 (272)
                          .+.+..+|+||++|+.   +.    + .+.+.++++.+++|+.|+|.+          |+|+     +. +++.++
T Consensus        81 ~~~~~~~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~p~~----------T~ll-----~~-a~~~g~  144 (182)
T d1vi2a1          81 QQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHM----------TKLL-----QQ-AQQAGC  144 (182)
T ss_dssp             HHHHHHHHHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCCSSSS----------CHHH-----HH-HHTTTC
T ss_pred             ccchhhhhcccceeccccCCccccccchhhhhHHHhhhcchhhHHhhcCccc----------cHHH-----HH-HHHCcC
Confidence                2345789999999872   21    1 244567889999999999876          6677     55 567777


Q ss_pred             eccCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 024116          242 ITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  272 (272)
Q Consensus       242 ~tpvpGGvGp~T~amL~~n~v~a~~~~~~~~  272 (272)
                        ++.+|.+     ||++|++++++.|+|.+
T Consensus       145 --~~i~Gl~-----Mli~Qa~~~f~iwtg~~  168 (182)
T d1vi2a1         145 --KTIDGYG-----MLLWQGAEQFTLWTGKD  168 (182)
T ss_dssp             --EEECHHH-----HHHHHHHHHHHHHHSSC
T ss_pred             --eEeccHH-----HHHHHHHHHHHHHhCCC
Confidence              5666777     99999999999999963

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.70  E-value=1.3e-17  Score=139.01  Aligned_cols=127  Identities=21%  Similarity=0.273  Sum_probs=104.2

Q ss_pred             HHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------------CHhhh
Q 024116          121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------------NPEQI  176 (272)
Q Consensus       121 ~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~------------------------~l~~~  176 (272)
                      .|+++.|++++.+++||+|+|+|+|++ +|+++..|.+.| +|+|++|+.+                        ++...
T Consensus         3 ~G~~~~l~~~~~~~~~k~vlIlGaGG~-arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (177)
T d1nvta1           3 IGARMALEEEIGRVKDKNIVIYGAGGA-ARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVD   80 (177)
T ss_dssp             HHHHHHHHHHHCCCCSCEEEEECCSHH-HHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCC
T ss_pred             HHHHHHHHHhCCCcCCCEEEEECCcHH-HHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhc
Confidence            799999999999999999999999997 999999998776 9999999732                        23345


Q ss_pred             cCCCcEEEEecCCC---c-----cccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEeccCCCc
Q 024116          177 TSEADIVIAAAGVA---N-----LVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG  248 (272)
Q Consensus       177 l~~ADIVIsa~g~p---~-----~i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpGG  248 (272)
                      +..+|++|++|+..   .     .++.+.++++.+++|+.|+|.+          |.|+     +. ++..++  ++.+|
T Consensus        81 ~~~~dliIn~tp~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~~----------T~l~-----~~-a~~~G~--~~i~G  142 (177)
T d1nvta1          81 LDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLE----------TVLL-----KE-AKKVNA--KTING  142 (177)
T ss_dssp             CTTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSS----------CHHH-----HH-HHTTTC--EEECT
T ss_pred             cchhhhhccCCcccccccccccchhhhhccCcccceeeecCCcHh----------HHHH-----HH-HHHCCC--cccCC
Confidence            67899999998742   1     2466778889999999999876          5676     55 566677  45567


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhCCC
Q 024116          249 VGPMTVAMLLSNTLDSAKRAYGFT  272 (272)
Q Consensus       249 vGp~T~amL~~n~v~a~~~~~~~~  272 (272)
                      ..     ||++|++.++++|+|.+
T Consensus       143 l~-----MLv~Qa~~qf~lwtg~~  161 (177)
T d1nvta1         143 LG-----MLIYQGAVAFKIWTGVE  161 (177)
T ss_dssp             HH-----HHHHHHHHHHHHHHSSC
T ss_pred             HH-----HHHHHHHHHHHHHHCCC
Confidence            76     99999999999999964

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=99.70  E-value=5.2e-18  Score=140.62  Aligned_cols=128  Identities=11%  Similarity=0.166  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCCC---Hh----------hhcCCCcEEEE
Q 024116          120 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTKN---PE----------QITSEADIVIA  185 (272)
Q Consensus       120 a~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t~~---l~----------~~l~~ADIVIs  185 (272)
                      ..|+.++|++++++ ++|+|+|+|+||+ +|+++..|.+.|+ +|+|++|+.+.   +.          ....++|+||+
T Consensus         2 ~~G~~~~l~~~~~~-~~~~vlIlGaGGa-arai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~~~~~DliIN   79 (167)
T d1npya1           2 YIAIVKLIEKYHLN-KNAKVIVHGSGGM-AKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLENQQADILVN   79 (167)
T ss_dssp             HHHHHHHHHHTTCC-TTSCEEEECSSTT-HHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCTTCCCSEEEE
T ss_pred             hHHHHHHHHHcCCC-CCCeEEEECCCHH-HHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhcccccchhhhee
Confidence            37999999999998 8999999999997 9999999999996 79999997421   11          12467899999


Q ss_pred             ecCC---Ccc------ccCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhceEeccCCCcccHHHHHH
Q 024116          186 AAGV---ANL------VRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAM  256 (272)
Q Consensus       186 a~g~---p~~------i~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~am  256 (272)
                      ||+.   |+.      ++...++++.+|+|+.|+|.+          |+|+     +. +++.++  ++-+|.+     |
T Consensus        80 aTpiGm~~~~~~~~l~~~~~~~~~~~~v~D~vY~P~~----------T~ll-----~~-A~~~G~--~~i~Gl~-----M  136 (167)
T d1npya1          80 VTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVE----------TPFI-----RY-AQARGK--QTISGAA-----V  136 (167)
T ss_dssp             CSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSSS----------CHHH-----HH-HHHTTC--EEECHHH-----H
T ss_pred             ccccCCccccccccccccHhhcCCcceEEEEeeccCC----------CHHH-----HH-HHHCCC--eEEECHH-----H
Confidence            8872   321      344457788999999999976          6777     55 566777  4666777     9


Q ss_pred             HHHHHHHHHHHHhCCC
Q 024116          257 LLSNTLDSAKRAYGFT  272 (272)
Q Consensus       257 L~~n~v~a~~~~~~~~  272 (272)
                      |++|++++|+.|+|..
T Consensus       137 li~Qa~~~f~lwtg~~  152 (167)
T d1npya1         137 IVLQAVEQFELYTHQR  152 (167)
T ss_dssp             HHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            9999999999999963

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=99.67  E-value=2e-17  Score=137.65  Aligned_cols=130  Identities=18%  Similarity=0.177  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH-------------------hhhcCCC
Q 024116          120 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP-------------------EQITSEA  180 (272)
Q Consensus       120 a~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l-------------------~~~l~~A  180 (272)
                      ..|+++.|++.+++++||+|+|+|+||+ +|+++..|.+.+.+|+|++|+.+..                   ...+.++
T Consensus         2 ~~Gf~~~l~~~~~~~~~k~vlIlGaGGa-arai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1p77a1           2 GIGLVTDLQRLNWLRPNQHVLILGAGGA-TKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTY   80 (171)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEECCSHH-HHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCC
T ss_pred             HHHHHHHHHHcCCCCCCCEEEEECCcHH-HHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhcccccccc
Confidence            3799999999999999999999999998 9999999998888999999984211                   1235789


Q ss_pred             cEEEEecCC--Ccc---ccCCCcCCCcEEEEeee-CCCCCCCCCCCCCCceEecccchhhhhhhceEeccCCCcccHHHH
Q 024116          181 DIVIAAAGV--ANL---VRGSWLKPGAVVLDVGT-CPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTV  254 (272)
Q Consensus       181 DIVIsa~g~--p~~---i~~~~vk~g~vviDig~-~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpGGvGp~T~  254 (272)
                      |+||++|+.  ++.   ...+.++++.+++|+.| +|.+          |.|+     +. +++.++-+ +.+|.+    
T Consensus        81 diiIN~tp~g~~~~~~~~~~~~~~~~~~~~D~vy~~p~~----------T~~l-----~~-A~~~g~~~-v~~Gl~----  139 (171)
T d1p77a1          81 DLVINATSAGLSGGTASVDAEILKLGSAFYDMQYAKGTD----------TPFI-----AL-CKSLGLTN-VSDGFG----  139 (171)
T ss_dssp             SEEEECCCC-------CCCHHHHHHCSCEEESCCCTTSC----------CHHH-----HH-HHHTTCCC-EECSHH----
T ss_pred             ceeeecccccccccccchhhhhhcccceeeeeeccCccc----------HHHH-----HH-HHHcCCCc-ccCcHH----
Confidence            999999874  221   23345677889999999 5654          6666     44 56666532 657787    


Q ss_pred             HHHHHHHHHHHHHHhCCC
Q 024116          255 AMLLSNTLDSAKRAYGFT  272 (272)
Q Consensus       255 amL~~n~v~a~~~~~~~~  272 (272)
                       ||++|++.+++.|+|.+
T Consensus       140 -Ml~~Qa~~~f~iwtg~~  156 (171)
T d1p77a1         140 -MLVAQAAHSFHLWRGVM  156 (171)
T ss_dssp             -HHHHHHHHHHHHHHSCC
T ss_pred             -HHHHHHHHHHHHHHCCC
Confidence             99999999999999974

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=99.38  E-value=2.9e-13  Score=111.02  Aligned_cols=94  Identities=14%  Similarity=0.198  Sum_probs=80.7

Q ss_pred             CCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-----------------CCHhhhcCC
Q 024116          118 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-----------------KNPEQITSE  179 (272)
Q Consensus       118 ~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t-----------------~~l~~~l~~  179 (272)
                      ..+.++++++++...++++|+++|||+|++ |+.++..|..+|+ .+++++|+.                 .++.+.+.+
T Consensus         6 Sv~~aAv~la~~~~~~l~~~~ilviGaG~~-g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~   84 (159)
T d1gpja2           6 SIGSAAVELAERELGSLHDKTVLVVGAGEM-GKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLAR   84 (159)
T ss_dssp             SHHHHHHHHHHHHHSCCTTCEEEEESCCHH-HHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHT
T ss_pred             cHHHHHHHHHHHHhCCcccCeEEEECCCHH-HHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhcc
Confidence            346778889888877999999999999996 9999999999997 799999973                 366788999


Q ss_pred             CcEEEEecCCCcc-ccCCCcC---------CCcEEEEeeeCCC
Q 024116          180 ADIVIAAAGVANL-VRGSWLK---------PGAVVLDVGTCPV  212 (272)
Q Consensus       180 ADIVIsa~g~p~~-i~~~~vk---------~g~vviDig~~~~  212 (272)
                      +|+||++|+.|+. +++++++         ...++||+++|++
T Consensus        85 ~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr~  127 (159)
T d1gpja2          85 SDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPRD  127 (159)
T ss_dssp             CSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSCS
T ss_pred             CCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEeecCCCC
Confidence            9999999999985 7888874         2459999999875

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.32  E-value=1.4e-12  Score=106.92  Aligned_cols=87  Identities=23%  Similarity=0.309  Sum_probs=77.5

Q ss_pred             HHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEEEEecCCCcc
Q 024116          126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVANL  192 (272)
Q Consensus       126 ~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIVIsa~g~p~~  192 (272)
                      +++..+.-+.||+++|+|+|.+ ||.+|+.|...|+.|+|+..+.             ..+++.++.+|++|||||.++.
T Consensus        13 i~r~t~~~laGk~vvV~GYG~v-GrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v~~~~~a~~~aDi~vTaTGn~~v   91 (163)
T d1v8ba1          13 LMRATDFLISGKIVVICGYGDV-GKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVDV   91 (163)
T ss_dssp             HHHHHCCCCTTSEEEEECCSHH-HHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCSSSSS
T ss_pred             HHHHhCceecCCEEEEeccccc-chhHHHHHHhCCCEEEEEecCchhhHHHHhcCCccCchhHccccCcEEEEcCCCCcc
Confidence            3456789999999999999995 9999999999999999998763             4788999999999999999999


Q ss_pred             ccCCCc---CCCcEEEEeeeCCCC
Q 024116          193 VRGSWL---KPGAVVLDVGTCPVD  213 (272)
Q Consensus       193 i~~~~v---k~g~vviDig~~~~~  213 (272)
                      |+.++|   |+|+++..+|+...|
T Consensus        92 I~~~h~~~MKdgaIl~N~GHfd~E  115 (163)
T d1v8ba1          92 IKLEHLLKMKNNAVVGNIGHFDDE  115 (163)
T ss_dssp             BCHHHHTTCCTTCEEEECSSTTTS
T ss_pred             ccHHHHHHhhCCeEEEeccccchh
Confidence            888765   889999999988665

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=4.1e-12  Score=104.41  Aligned_cols=92  Identities=25%  Similarity=0.376  Sum_probs=79.7

Q ss_pred             HHHH-HHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEEEEe
Q 024116          121 KGCI-ELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAA  186 (272)
Q Consensus       121 ~g~~-~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIVIsa  186 (272)
                      +.++ .+++..+..+.||+++|+|+|.+ ||.+|+.|...|++|++++.+.             ..+++.++.||+||++
T Consensus         8 ~S~~~~~~r~t~~~l~Gk~v~V~GyG~i-G~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivvta   86 (163)
T d1li4a1           8 ESLIDGIKRATDVMIAGKVAVVAGYGDV-GKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTT   86 (163)
T ss_dssp             HHHHHHHHHHHCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEEC
T ss_pred             hhHHHHHHHHhCceecCCEEEEeccccc-cHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEEec
Confidence            4444 34556899999999999999995 9999999999999999998763             4678999999999999


Q ss_pred             cCCCccccCCCc---CCCcEEEEeeeCCCC
Q 024116          187 AGVANLVRGSWL---KPGAVVLDVGTCPVD  213 (272)
Q Consensus       187 ~g~p~~i~~~~v---k~g~vviDig~~~~~  213 (272)
                      ||.++.|+.++|   |+|+++..+|+...|
T Consensus        87 TGn~~vI~~eh~~~MKdgaIL~N~Ghfd~E  116 (163)
T d1li4a1          87 TGCIDIILGRHFEQMKDDAIVCNIGHFDVE  116 (163)
T ss_dssp             SSCSCSBCHHHHTTCCTTEEEEECSSSTTS
T ss_pred             CCCccchhHHHHHhccCCeEEEEeccccce
Confidence            999999988765   889999999987654

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.81  E-value=1.7e-09  Score=88.86  Aligned_cols=77  Identities=25%  Similarity=0.324  Sum_probs=66.1

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------CCHhhhcCCCcEEEEecC----
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------KNPEQITSEADIVIAAAG----  188 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t---------------------~~l~~~l~~ADIVIsa~g----  188 (272)
                      ++..+|+|||+|-+ |..++..+.+.||.|++++.+.                     ..+++.+++||+||+++=    
T Consensus        30 v~pa~V~ViGaGva-G~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~  108 (168)
T d1pjca1          30 VKPGKVVILGGGVV-GTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  108 (168)
T ss_dssp             BCCCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCCcEEEEECCChH-HHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence            46789999999885 9999999999999999998762                     246788999999999884    


Q ss_pred             -CCccccCCCc---CCCcEEEEeeeCC
Q 024116          189 -VANLVRGSWL---KPGAVVLDVGTCP  211 (272)
Q Consensus       189 -~p~~i~~~~v---k~g~vviDig~~~  211 (272)
                       .|++|+++|+   |||++|||++++.
T Consensus       109 ~aP~lIt~~mv~~Mk~GSVIVDvaidq  135 (168)
T d1pjca1         109 RAPILVPASLVEQMRTGSVIVDVAVDQ  135 (168)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETTCTT
T ss_pred             ccCeeecHHHHhhcCCCcEEEEeecCC
Confidence             3668999986   8899999999875

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.70  E-value=6.4e-09  Score=86.32  Aligned_cols=83  Identities=22%  Similarity=0.296  Sum_probs=65.7

Q ss_pred             cCCHHHHHHHH-HHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------------
Q 024116          117 PCTPKGCIELL-IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------------  170 (272)
Q Consensus       117 p~Ta~g~~~~l-~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------------  170 (272)
                      ++|+.|.+..+ +..+.+|+||+++|.|+++-+|+.++..|+++|++|+++.|+.                         
T Consensus         3 ~~~~~~~v~~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~   82 (191)
T d1luaa1           3 NTTAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD   82 (191)
T ss_dssp             HHHHHHHHHHHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS
T ss_pred             CccHHHHHHHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhccc
Confidence            34667766666 5669999999999999877789999999999999999998872                         


Q ss_pred             -CCHhhhcCCCcEEEEecCCC-ccccCCCcC
Q 024116          171 -KNPEQITSEADIVIAAAGVA-NLVRGSWLK  199 (272)
Q Consensus       171 -~~l~~~l~~ADIVIsa~g~p-~~i~~~~vk  199 (272)
                       .++++.+.++|+||+++|.+ ..++.+.++
T Consensus        83 ~~~~~~~~~~iDilin~Ag~g~~~~~~e~~~  113 (191)
T d1luaa1          83 DASRAEAVKGAHFVFTAGAIGLELLPQAAWQ  113 (191)
T ss_dssp             HHHHHHHTTTCSEEEECCCTTCCCBCHHHHH
T ss_pred             HHHHHHHhcCcCeeeecCccccccCCHHHHH
Confidence             23457789999999998853 345555443

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.56  E-value=4.6e-08  Score=81.16  Aligned_cols=77  Identities=22%  Similarity=0.264  Sum_probs=62.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------------------------------
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------------------------------  171 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~------------------------------------------  171 (272)
                      +...+|+|||+|-+ |..++..+.+.||.|++++.+..                                          
T Consensus        27 V~pa~VvViGaGva-G~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~  105 (183)
T d1l7da1          27 VPPARVLVFGVGVA-GLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  105 (183)
T ss_dssp             ECCCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             cCCcEEEEEcCcHH-HHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence            34579999999875 99999999999999999985421                                          


Q ss_pred             -CHhhhcCCCcEEEEecC-----CCccccCCCc---CCCcEEEEeeeCC
Q 024116          172 -NPEQITSEADIVIAAAG-----VANLVRGSWL---KPGAVVLDVGTCP  211 (272)
Q Consensus       172 -~l~~~l~~ADIVIsa~g-----~p~~i~~~~v---k~g~vviDig~~~  211 (272)
                       .+.+.+++||+||+++=     .|.+++++|+   |||++|||+++..
T Consensus       106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidq  154 (183)
T d1l7da1         106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEA  154 (183)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGG
T ss_pred             HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecC
Confidence             12345889999998884     3567899886   7899999999864

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.47  E-value=1.5e-07  Score=77.83  Aligned_cols=77  Identities=25%  Similarity=0.303  Sum_probs=65.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------CCHhhhcCCCcEEEEecCC-C---ccccCCC---
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------KNPEQITSEADIVIAAAGV-A---NLVRGSW---  197 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------~~l~~~l~~ADIVIsa~g~-p---~~i~~~~---  197 (272)
                      .+.||++.|||.|.+ |+.++.+|...|++|+.+++..        .++++.+++||+|+.+++. |   ++|+.+.   
T Consensus        39 ~l~gk~vgIiG~G~I-G~~va~~l~~~g~~v~~~d~~~~~~~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~  117 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEI-GTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLAL  117 (181)
T ss_dssp             CCTTCEEEEESCSTH-HHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTT
T ss_pred             cccCceEEEeccccc-cccceeeeeccccccccccccccccceeeeechhhhhhccchhhcccccccccccccccceeee
Confidence            479999999999996 9999999999999999998764        4688999999999988873 2   4676654   


Q ss_pred             cCCCcEEEEeeeC
Q 024116          198 LKPGAVVLDVGTC  210 (272)
Q Consensus       198 vk~g~vviDig~~  210 (272)
                      +|+++++|+++--
T Consensus       118 mk~~ailIN~~RG  130 (181)
T d1qp8a1         118 MAEDAVFVNVGRA  130 (181)
T ss_dssp             SCTTCEEEECSCG
T ss_pred             ccccceEEecccc
Confidence            5889999999844

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=98.37  E-value=2.2e-07  Score=77.87  Aligned_cols=80  Identities=18%  Similarity=0.300  Sum_probs=66.9

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-----------CCHhhhcCCCcEEEEecCC----CccccC
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------KNPEQITSEADIVIAAAGV----ANLVRG  195 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-----------~~l~~~l~~ADIVIsa~g~----p~~i~~  195 (272)
                      +.++.||++.|||.|.+ |+.++.+|...|++|..+++..           .++.+.+++||+|+..++.    -++++.
T Consensus        38 g~el~gk~vgIiG~G~I-G~~va~~l~~fg~~V~~~d~~~~~~~~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~  116 (197)
T d1j4aa1          38 GREVRDQVVGVVGTGHI-GQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMIND  116 (197)
T ss_dssp             BCCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSH
T ss_pred             CccccCCeEEEeccccc-chhHHHhHhhhcccccccCcccccccccceeeeccccccccccccccccCCccccccccccH
Confidence            46789999999999996 9999999999999999987652           4688999999999988872    346776


Q ss_pred             CC---cCCCcEEEEeeeCC
Q 024116          196 SW---LKPGAVVLDVGTCP  211 (272)
Q Consensus       196 ~~---vk~g~vviDig~~~  211 (272)
                      +.   +++++++|+++--.
T Consensus       117 ~~l~~mk~~a~lIN~sRG~  135 (197)
T d1j4aa1         117 ESIAKMKQDVVIVNVSRGP  135 (197)
T ss_dssp             HHHHHSCTTEEEEECSCGG
T ss_pred             HHHhhhCCccEEEecCchh
Confidence            64   47899999998543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=98.29  E-value=5e-07  Score=75.32  Aligned_cols=82  Identities=16%  Similarity=0.252  Sum_probs=68.0

Q ss_pred             HhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCcEEEEecCC----Cc
Q 024116          129 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGV----AN  191 (272)
Q Consensus       129 ~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------~~l~~~l~~ADIVIsa~g~----p~  191 (272)
                      ..+.++.||++.|||.|.+ |+.++.+|...|++|..+++..             .++++.+++||+|+..++.    -+
T Consensus        42 ~~~~eL~gktvgIiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~  120 (193)
T d1mx3a1          42 SGAARIRGETLGIIGLGRV-GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH  120 (193)
T ss_dssp             TTCCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTT
T ss_pred             cCceeeeCceEEEeccccc-cccceeeeeccccceeeccCcccccchhhhccccccchhhccccCCEEEEeecccccchh
Confidence            3467899999999999996 9999999999999999998752             3688999999999987772    23


Q ss_pred             cccCC---CcCCCcEEEEeeeCC
Q 024116          192 LVRGS---WLKPGAVVLDVGTCP  211 (272)
Q Consensus       192 ~i~~~---~vk~g~vviDig~~~  211 (272)
                      +++.+   .+|+++++|+++--.
T Consensus       121 li~~~~l~~mk~~a~lIN~sRG~  143 (193)
T d1mx3a1         121 LINDFTVKQMRQGAFLVNTARGG  143 (193)
T ss_dssp             SBSHHHHTTSCTTEEEEECSCTT
T ss_pred             hhhHHHHhccCCCCeEEecCCce
Confidence            56655   568899999998654

>d1vi2a2 c.58.1.5 (A:5-106) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1.5e-07  Score=70.86  Aligned_cols=67  Identities=21%  Similarity=0.230  Sum_probs=53.4

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-ccccCcc
Q 024116           27 RNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EKDVDGF   98 (272)
Q Consensus        27 ~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~KDvdg~   98 (272)
                      ..++.+|++.|+++.|..++.  ++++|.+.++.+.+ .++.|++||+|+|+  ...++++.+++ .+.+.++
T Consensus        20 ~ihn~~f~~~gi~~~Y~~~~v--~~~~l~~~~~~l~~-~~~~G~nVT~P~K~--~~~~~~d~~~~~a~~igAv   87 (102)
T d1vi2a2          20 EMQNKALEKAGLPFTYMAFEV--DNDSFPGAIEGLKA-LKMRGTGVSMPNKQ--LACEYVDELTPAAKLVGAI   87 (102)
T ss_dssp             HHHHHHHHHTTCSEEEEEEEC--CTTTHHHHHHHHHH-TTCCEEEECTTSTT--GGGGGCSEECHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCcEEeeEee--CchHHHHHHHHhhh-hccchhhhhhHHHH--HHHHhcccCCHHHHhhCcE
Confidence            578999999999999999965  56778899998877 47999999999997  44556666666 5555554

>d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=98.27  E-value=2.7e-07  Score=69.38  Aligned_cols=81  Identities=15%  Similarity=0.270  Sum_probs=61.4

Q ss_pred             CeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhc
Q 024116            9 PGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDA   88 (272)
Q Consensus         9 p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~   88 (272)
                      .++.+- +..+|.|.+ =+.++++|+++|++++|..|+.    +++.+.++.+.+ .++.|++|++|+|+  ...++++.
T Consensus         6 t~~~~~-i~g~P~s~S-P~ihn~~~~~~gi~~~Y~~~~v----~~l~~~~~~~~~-~~~~G~nVT~P~K~--~~~~~~d~   76 (102)
T d1npya2           6 TQLCMS-LSGRPSNFG-TTFHNYLYDKLGLNFIYKAFTT----QDIEHAIKGVRA-LGIRGCAVSMPFKE--TCMPFLDE   76 (102)
T ss_dssp             CEEEEE-ECSSCCSHH-HHHHHHHHHHHTCCEEEEEECC----SCHHHHHHHHHH-HTCCEEEECTTCTT--TTGGGCSE
T ss_pred             CEEEEE-EcCCcccCC-HHHHHHHHHHcCCCeEEeeEec----ccHHHHHHHHhc-cccceeEEehhHHH--HHHHHhhh
Confidence            345433 445778876 4689999999999999999966    257777777776 47999999999998  44667777


Q ss_pred             CCc-ccccCcc
Q 024116           89 VSL-EKDVDGF   98 (272)
Q Consensus        89 i~p-~KDvdg~   98 (272)
                      +++ .+.+.++
T Consensus        77 ~s~~a~~igAv   87 (102)
T d1npya2          77 IHPSAQAIESV   87 (102)
T ss_dssp             ECHHHHTTTCC
T ss_pred             CChhhhhcCcE
Confidence            777 6666555

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=98.23  E-value=7.7e-07  Score=74.38  Aligned_cols=81  Identities=20%  Similarity=0.302  Sum_probs=67.5

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------CCHhhhcCCCcEEEEecCC-C---ccccCC
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------KNPEQITSEADIVIAAAGV-A---NLVRGS  196 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t----------~~l~~~l~~ADIVIsa~g~-p---~~i~~~  196 (272)
                      +.++.||++.|||.|.+ |+.++.+|..-|++|..+++..          .++.+.+++||+|+..++. +   ++++.+
T Consensus        40 ~~~l~~ktvgIiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~  118 (199)
T d1dxya1          40 GKELGQQTVGVMGTGHI-GQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEA  118 (199)
T ss_dssp             CCCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHH
T ss_pred             cccccceeeeeeecccc-cccccccccccceeeeccCCccchhhhcchhHHHHHHHHHhcccceeeecccccccccccHH
Confidence            46789999999999996 9999999999999999998753          3678899999999988773 2   367776


Q ss_pred             C---cCCCcEEEEeeeCCC
Q 024116          197 W---LKPGAVVLDVGTCPV  212 (272)
Q Consensus       197 ~---vk~g~vviDig~~~~  212 (272)
                      .   +++++++|+++--..
T Consensus       119 ~l~~mk~~a~lIN~aRG~v  137 (199)
T d1dxya1         119 AFNLMKPGAIVINTARPNL  137 (199)
T ss_dssp             HHHHSCTTEEEEECSCTTS
T ss_pred             HhhccCCceEEEecccHhh
Confidence            4   489999999986543

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.20  E-value=9.8e-07  Score=72.82  Aligned_cols=81  Identities=22%  Similarity=0.330  Sum_probs=67.0

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------CCHhhhcCCCcEEEEecC-C---Ccccc
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAG-V---ANLVR  194 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t------------~~l~~~l~~ADIVIsa~g-~---p~~i~  194 (272)
                      +.++.||++.|+|.|.+ |+.++.+|..-|++|...+++.            .++++.+++||+|+..++ .   .++|+
T Consensus        39 ~~~l~~k~vgiiG~G~I-G~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin  117 (184)
T d1ygya1          39 GTEIFGKTVGVVGLGRI-GQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLID  117 (184)
T ss_dssp             BCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBC
T ss_pred             cccccceeeeeccccch-hHHHHHHhhhccceEEeecCCCChhHHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhh
Confidence            45789999999999996 9999999999999999988653            367889999999998887 2   34677


Q ss_pred             CCC---cCCCcEEEEeeeCCC
Q 024116          195 GSW---LKPGAVVLDVGTCPV  212 (272)
Q Consensus       195 ~~~---vk~g~vviDig~~~~  212 (272)
                      .+.   +|+++++|+++--..
T Consensus       118 ~~~l~~mk~~a~lIN~sRG~i  138 (184)
T d1ygya1         118 KEALAKTKPGVIIVNAARGGL  138 (184)
T ss_dssp             HHHHTTSCTTEEEEECSCTTS
T ss_pred             HHHHhhhCCCceEEEecchhh
Confidence            664   588999999986543

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=1.2e-06  Score=72.34  Aligned_cols=81  Identities=20%  Similarity=0.297  Sum_probs=68.2

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------CCHhhhcCCCcEEEEecCC-C---ccccCC
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------KNPEQITSEADIVIAAAGV-A---NLVRGS  196 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t----------~~l~~~l~~ADIVIsa~g~-p---~~i~~~  196 (272)
                      ..++.|+++.|+|.|.+ |+.++.+|...|++|+..++..          .++++.+++||||+...+. +   ++|+.+
T Consensus        39 ~~~l~~~~vgiiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~  117 (188)
T d1sc6a1          39 SFEARGKKLGIIGYGHI-GTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAK  117 (188)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHH
T ss_pred             cccccceEEEEeecccc-hhhhhhhcccccceEeeccccccchhhhhhhhhhHHHHHhhccceeecccCCcchhhhccHH
Confidence            45789999999999996 9999999999999999998653          3688999999999988873 3   467777


Q ss_pred             Cc---CCCcEEEEeeeCCC
Q 024116          197 WL---KPGAVVLDVGTCPV  212 (272)
Q Consensus       197 ~v---k~g~vviDig~~~~  212 (272)
                      .+   ++++++|.++-...
T Consensus       118 ~l~~mk~~a~lIN~aRG~l  136 (188)
T d1sc6a1         118 EISLMKPGSLLINASRGTV  136 (188)
T ss_dssp             HHHHSCTTEEEEECSCSSS
T ss_pred             HHhhCCCCCEEEEcCcHHh
Confidence            54   88999999986654

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=98.17  E-value=1.8e-06  Score=71.21  Aligned_cols=81  Identities=12%  Similarity=0.211  Sum_probs=67.2

Q ss_pred             hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCC-C---c
Q 024116          130 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGV-A---N  191 (272)
Q Consensus       130 ~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~-p---~  191 (272)
                      ...+++|+++.|+|.|.+ |+.++++|...|++|...++..              .++.+.+++||+|+...+. +   +
T Consensus        38 ~~~~l~~~~vgiiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~  116 (188)
T d2naca1          38 HAYDLEAMHVGTVAAGRI-GLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEH  116 (188)
T ss_dssp             TCCCCTTCEEEEECCSHH-HHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTT
T ss_pred             cceeccccceeecccccc-chhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccchh
Confidence            467899999999999996 9999999999999999998642              4678999999999988873 2   3


Q ss_pred             cccCC---CcCCCcEEEEeeeCC
Q 024116          192 LVRGS---WLKPGAVVLDVGTCP  211 (272)
Q Consensus       192 ~i~~~---~vk~g~vviDig~~~  211 (272)
                      +|+.+   .+++|+++|+++--.
T Consensus       117 li~~~~l~~mk~ga~lIN~aRG~  139 (188)
T d2naca1         117 MINDETLKLFKRGAYIVNTARGK  139 (188)
T ss_dssp             CBSHHHHTTSCTTEEEEECSCGG
T ss_pred             hhHHHHHHhCCCCCEEEecCchh
Confidence            67665   458899999998654

>d1p77a2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=98.12  E-value=4.6e-07  Score=67.89  Aligned_cols=68  Identities=12%  Similarity=0.052  Sum_probs=54.5

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-ccccCccc
Q 024116           27 RNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EKDVDGFH   99 (272)
Q Consensus        27 ~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~KDvdg~~   99 (272)
                      ..++.+|++.|+++.|..++.  +.+++.+.++.+.+ .++.|++||+|+|+  ...++++.+++ .+.+.+++
T Consensus        18 ~ihn~~~~~~gi~~~y~~~~v--~~~~~~~~~~~l~~-~~~~G~nVT~P~K~--~~~~~~d~~~~~a~~igAvN   86 (101)
T d1p77a2          18 LIQNKLAAQTHQTMEYIAKLG--DLDAFEQQLLAFFE-EGAKGCNITSPFKE--RAYQLADEYSQRAKLAEACN   86 (101)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEC--CTTTHHHHHHHHHH-TTCCEEEECTTCHH--HHHHHCSEECHHHHHHTCCS
T ss_pred             HHHHHHHHHcCCCcccccccC--CHHHHHHHHHHHHh-ccccceeeccHHHH--HHHHHhccCCHHHHHcCeeE
Confidence            468899999999999999865  56789999998876 57999999999996  44566666666 66666653

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=1.4e-06  Score=63.72  Aligned_cols=37  Identities=24%  Similarity=0.329  Sum_probs=34.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++||+|+|+|.|.+ |++++.+|.++|+.|++++.+.
T Consensus         2 ~~~~K~v~ViGlG~s-G~s~a~~L~~~g~~v~~~D~~~   38 (93)
T d2jfga1           2 DYQGKNVVIIGLGLT-GLSCVDFFLARGVTPRVMDTRM   38 (93)
T ss_dssp             CCTTCCEEEECCSHH-HHHHHHHHHHTTCCCEEEESSS
T ss_pred             CcCCCEEEEEeECHH-HHHHHHHHHHCCCEEEEeeCCc
Confidence            589999999999998 9999999999999999998764

>d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=3.2e-07  Score=68.83  Aligned_cols=72  Identities=11%  Similarity=0.134  Sum_probs=55.6

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCc-ccccCccc
Q 024116           22 SQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EKDVDGFH   99 (272)
Q Consensus        22 s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p-~KDvdg~~   99 (272)
                      |.+- ..++.+|++.|+++.|..+..  +++++.+.++.+.+ .++.|++||+|+|+  ...++++.+++ .+.+.+++
T Consensus        14 S~SP-~ihn~~~~~~gi~~~y~~~~v--~~~~~~~~~~~l~~-~~~~G~nVT~P~K~--~~~~~~d~~~~~a~~igAvN   86 (101)
T d1nyta2          14 SKSP-FIHQQFAQQLNIEHPYGRVLA--PINDFINTLNAFFS-AGGKGANVTVPFKE--EAFARADELTERAALAGAVN   86 (101)
T ss_dssp             CSHH-HHHHHHHHHHTCCCCEEEEEC--CTTCHHHHHHHHHH-TTCCEEEECTTCHH--HHHHHCSEECHHHHHHTCCS
T ss_pred             ccCH-HHHHHHHHHcCCcchhhhhcC--ChHhHHHHHHHhhh-ccchhheeehHHHH--HHHHHhccCChHHHHhCcEE
Confidence            3344 478999999999999998854  56789999999876 57999999999996  44556666666 66666653

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.09  E-value=7.2e-07  Score=70.90  Aligned_cols=76  Identities=16%  Similarity=0.152  Sum_probs=57.5

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------------CHhhhcCCCcEEEEecCCCc
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------NPEQITSEADIVIAAAGVAN  191 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-----------------------~l~~~l~~ADIVIsa~g~p~  191 (272)
                      ++|+|+|||+|.+ |+++|..|.++|.+|++++|+.+                       .+.+.+..+|+++++++...
T Consensus         1 ~~K~IliiGaG~~-G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~   79 (182)
T d1e5qa1           1 ATKSVLMLGSGFV-TRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTF   79 (182)
T ss_dssp             CCCEEEEECCSTT-HHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGG
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchh
Confidence            4799999999885 99999999999999999998731                       23456788899998886432


Q ss_pred             c--ccCCCcCCCcEEEEeeeCC
Q 024116          192 L--VRGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       192 ~--i~~~~vk~g~vviDig~~~  211 (272)
                      .  +.....+.+..++|+.+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~  101 (182)
T d1e5qa1          80 HATVIKSAIRQKKHVVTTSYVS  101 (182)
T ss_dssp             HHHHHHHHHHHTCEEECSSCCC
T ss_pred             hhHHHHHHHhhccceeecccCc
Confidence            1  2233445577888887654

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=98.08  E-value=2.5e-06  Score=70.83  Aligned_cols=81  Identities=15%  Similarity=0.166  Sum_probs=66.8

Q ss_pred             hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCC-C---c
Q 024116          130 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGV-A---N  191 (272)
Q Consensus       130 ~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~-p---~  191 (272)
                      .+.+++||++.|||.|.+ |+.++.+|...|++|...++..              .++.+.+++||+|+..++- |   +
T Consensus        41 ~~~~l~g~tvgIiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~  119 (191)
T d1gdha1          41 VGEKLDNKTLGIYGFGSI-GQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRY  119 (191)
T ss_dssp             CBCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTT
T ss_pred             ccceecccceEEeecccc-hHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhh
Confidence            356789999999999996 9999999999999999887642              3678999999999988873 3   4


Q ss_pred             cccCC---CcCCCcEEEEeeeCC
Q 024116          192 LVRGS---WLKPGAVVLDVGTCP  211 (272)
Q Consensus       192 ~i~~~---~vk~g~vviDig~~~  211 (272)
                      +|+.+   .+|+|+++|+++--.
T Consensus       120 li~~~~l~~mk~~a~lIN~sRG~  142 (191)
T d1gdha1         120 FFNKATIKSLPQGAIVVNTARGD  142 (191)
T ss_dssp             CBSHHHHTTSCTTEEEEECSCGG
T ss_pred             eecHHHhhCcCCccEEEecCCcc
Confidence            67665   458899999998654

>d1nvta2 c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.04  E-value=2.1e-06  Score=65.27  Aligned_cols=86  Identities=15%  Similarity=0.197  Sum_probs=60.5

Q ss_pred             CCCCeEEEEEeCCCc-chHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHH
Q 024116            6 GKVPGLAVILVGERR-DSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (272)
Q Consensus         6 ~~~p~Laii~vg~~~-~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~   84 (272)
                      .-+.++ .=.+|+.- .|.+-. .++++|++.|++++|..++.  +++++...++.+.+ .++.|++|++|+|+  +..+
T Consensus         8 ~~~tk~-~gliG~pi~~S~SP~-ihn~~~~~~gi~~~y~~~~v--~~~~l~~~~~~~~~-~~~~G~nVT~P~K~--~~~~   80 (110)
T d1nvta2           8 NAKTKV-IGLIGHPVEHSFSPI-MHNAAFKDKGLNYVYVAFDV--LPENLKYVIDGAKA-LGIVGFNVTIPHKI--EIMK   80 (110)
T ss_dssp             CTTCEE-EEEEESSCTTCSHHH-HHHHHHHHTTCCEEEEEEEC--CGGGGGGHHHHHHH-HTCCEEEECTTSTT--GGGG
T ss_pred             CCCccE-EEEEcCCcccccCHH-HHHHHHHHcCCcEEEeeccc--CHHHHHHHHHhhcc-cCcchhheehHHHH--HHHH
Confidence            345566 22346332 333333 67899999999999999954  66777788887775 47999999999997  4456


Q ss_pred             HHhcCCc-ccccCcc
Q 024116           85 ILDAVSL-EKDVDGF   98 (272)
Q Consensus        85 i~~~i~p-~KDvdg~   98 (272)
                      +++.+++ .+.+.++
T Consensus        81 ~~d~~s~~a~~igav   95 (110)
T d1nvta2          81 YLDEIDKDAQLIGAV   95 (110)
T ss_dssp             GCSEECHHHHHHTCC
T ss_pred             HhccCCHHHHHhCcE
Confidence            6677777 5666555

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.92  E-value=6.4e-06  Score=65.74  Aligned_cols=73  Identities=19%  Similarity=0.281  Sum_probs=59.5

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCcc----c-cCC--
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL----V-RGS--  196 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~~----i-~~~--  196 (272)
                      ||-+||.|.+ |.++|..|++.|.+|++++|+.              .+..+.++++|+||++++.+.-    + ..+  
T Consensus         2 kIgiIGlG~M-G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~   80 (161)
T d1vpda2           2 KVGFIGLGIM-GKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   80 (161)
T ss_dssp             EEEEECCSTT-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             EEEEEehhHH-HHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence            6899999986 9999999999999999999874              3567889999999999986542    2 222  


Q ss_pred             --CcCCCcEEEEeeeCC
Q 024116          197 --WLKPGAVVLDVGTCP  211 (272)
Q Consensus       197 --~vk~g~vviDig~~~  211 (272)
                        ..++|.++||++...
T Consensus        81 ~~~~~~g~iiid~sT~~   97 (161)
T d1vpda2          81 IEGAKPGTVLIDMSSIA   97 (161)
T ss_dssp             HHHCCTTCEEEECSCCC
T ss_pred             hhccCCCCEEEECCCCC
Confidence              347899999998653

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.91  E-value=9.3e-06  Score=64.96  Aligned_cols=71  Identities=17%  Similarity=0.188  Sum_probs=56.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC-----------------------------CCCHhhhcCCCcEEEEe
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-----------------------------TKNPEQITSEADIVIAA  186 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~-----------------------------t~~l~~~l~~ADIVIsa  186 (272)
                      .||+.|||+|.+ |.+++..|++.|.+|++..|.                             +.++.+.+++||+||.+
T Consensus         1 sk~iaIiGaG~~-G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~   79 (184)
T d1bg6a2           1 SKTYAVLGLGNG-GHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   79 (184)
T ss_dssp             CCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CCEEEEECccHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence            489999999885 999999999999999999875                             13567889999999999


Q ss_pred             cCCCcc---c--cCCCcCCCcEEEEe
Q 024116          187 AGVANL---V--RGSWLKPGAVVLDV  207 (272)
Q Consensus       187 ~g~p~~---i--~~~~vk~g~vviDi  207 (272)
                      ++....   +  =+.+++++++|+..
T Consensus        80 v~~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          80 VPAIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             SCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             EchhHHHHHHHHhhhccCCCCEEEEe
Confidence            986542   2  13467788877754

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.87  E-value=9.3e-06  Score=63.85  Aligned_cols=76  Identities=18%  Similarity=0.227  Sum_probs=60.8

Q ss_pred             CccceEEEEc-CCcccHHHHHHHHHhCCCEEEEEeCCCC-CHhhhcCCCcEEEEecCCCcc---c--cCCCcCCCcEEEE
Q 024116          134 IMGKNAVVIG-RSNIVGLPTSLLLQRHHATVSIVHALTK-NPEQITSEADIVIAAAGVANL---V--RGSWLKPGAVVLD  206 (272)
Q Consensus       134 l~gk~v~ViG-~g~~vG~~la~~L~~~ga~V~v~~~~t~-~l~~~l~~ADIVIsa~g~p~~---i--~~~~vk~g~vviD  206 (272)
                      ..=|+|.||| .|.+ |++++..|.+.|.+|+++++... ..++.++.+|+++.++.....   +  -...++++++++|
T Consensus         7 ~~~~kI~iIGg~G~m-G~~la~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~iiiD   85 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKL-GGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIERLKPYLTENMLLAD   85 (152)
T ss_dssp             TTCCCEEEETTTSHH-HHHHHHHHHTTTCCEEEECTTCGGGHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEE
T ss_pred             CCCCeEEEEcCCCHH-HHHHHHHHHHcCCCcEecccccccccchhhhhccccccccchhhheeeeecccccccCCceEEE
Confidence            3458999999 7775 99999999999999999998764 456678999999999985432   1  1235678999999


Q ss_pred             eeeC
Q 024116          207 VGTC  210 (272)
Q Consensus       207 ig~~  210 (272)
                      ++..
T Consensus        86 ~~Sv   89 (152)
T d2pv7a2          86 LTSV   89 (152)
T ss_dssp             CCSC
T ss_pred             eccc
Confidence            9864

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.75  E-value=3.6e-05  Score=61.34  Aligned_cols=73  Identities=22%  Similarity=0.392  Sum_probs=59.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCc----cc-cCC-
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LV-RGS-  196 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~----~i-~~~-  196 (272)
                      ++|.+||.|.+ |.++|..|.+.|.+|++++|+.              .++.+.++++|+|++++..+.    .+ ..+ 
T Consensus         2 ~kIg~IGlG~M-G~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~   80 (162)
T d3cuma2           2 KQIAFIGLGHM-GAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDG   80 (162)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTC
T ss_pred             CEEEEEEEHHH-HHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhcccc
Confidence            57999999996 9999999999999999999873              467899999999999998643    11 222 


Q ss_pred             ---CcCCCcEEEEeeeC
Q 024116          197 ---WLKPGAVVLDVGTC  210 (272)
Q Consensus       197 ---~vk~g~vviDig~~  210 (272)
                         .+++|.++||++..
T Consensus        81 ~~~~l~~g~iiid~st~   97 (162)
T d3cuma2          81 LLAHIAPGTLVLECSTI   97 (162)
T ss_dssp             HHHHSCTTCEEEECSCC
T ss_pred             ccccCCCCCEEEECCCC
Confidence               36789999999865

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.67  E-value=4.6e-05  Score=57.17  Aligned_cols=59  Identities=14%  Similarity=0.205  Sum_probs=46.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-CCH-----------------hhhcCCCcEEEEecCCCc
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-KNP-----------------EQITSEADIVIAAAGVAN  191 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-~~l-----------------~~~l~~ADIVIsa~g~p~  191 (272)
                      ++++||+|+|||.|.+ |..-+..|++.||.|++..... +++                 .+.+..+|+|+.+++.+.
T Consensus         8 l~l~~k~vlVvG~G~v-a~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~   84 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDV-AERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDT   84 (113)
T ss_dssp             ECCBTCEEEEECCSHH-HHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCHH
T ss_pred             EEeCCCEEEEECCCHH-HHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCCHH
Confidence            5789999999999995 9999999999999999987542 111                 245677788888877653

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.62  E-value=2.5e-05  Score=62.08  Aligned_cols=72  Identities=21%  Similarity=0.196  Sum_probs=56.3

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------CHhhhcCCCcEEEEecCCCc---ccc--CCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------NPEQITSEADIVIAAAGVAN---LVR--GSW  197 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~---------------~l~~~l~~ADIVIsa~g~p~---~i~--~~~  197 (272)
                      ||.|||.|.+ |.+++..|.+.|.+|+.++|+.+               +..+.+++||+||.+++...   .+.  .+.
T Consensus         2 kI~iIG~G~m-G~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~~~~~vl~~l~~~   80 (165)
T d2f1ka2           2 KIGVVGLGLI-GASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQLILPTLEKLIPH   80 (165)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHHHHHHHHHHHGGG
T ss_pred             EEEEEeecHH-HHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcHhhhhhhhhhhhhh
Confidence            6899999885 99999999999999999988631               23467899999999986321   221  246


Q ss_pred             cCCCcEEEEeeeC
Q 024116          198 LKPGAVVLDVGTC  210 (272)
Q Consensus       198 vk~g~vviDig~~  210 (272)
                      ++++.+|+|++..
T Consensus        81 l~~~~iv~~~~s~   93 (165)
T d2f1ka2          81 LSPTAIVTDVASV   93 (165)
T ss_dssp             SCTTCEEEECCSC
T ss_pred             cccccceeecccc
Confidence            7889999999743

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=4.8e-05  Score=62.21  Aligned_cols=56  Identities=18%  Similarity=0.213  Sum_probs=47.5

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------CCHhhhcCCCcEEEEecCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------KNPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t---------------------~~l~~~l~~ADIVIsa~g~p  190 (272)
                      ..|||+|+|++|.+|+.++..|+++|.+|++..|+.                     .++.+.++.+|+||+++|..
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~   78 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEeccC
Confidence            468999999988899999999999999999998753                     13457789999999998854

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.57  E-value=7.6e-05  Score=62.14  Aligned_cols=93  Identities=17%  Similarity=0.245  Sum_probs=63.2

Q ss_pred             CCHHHHHHHHH----HhCC-CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------CHhhhc-C
Q 024116          118 CTPKGCIELLI----RSGV-EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQIT-S  178 (272)
Q Consensus       118 ~Ta~g~~~~l~----~~~~-~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------~l~~~l-~  178 (272)
                      +|++|+...++    +.+. +|+||+|+|-|.|. ||+.++.+|.+.|++|++++.+..             ...+.+ .
T Consensus         4 ~Ta~Gv~~~~~~~~~~~g~~~L~gk~v~IqG~G~-VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~~~~~~~~   82 (201)
T d1c1da1           4 TTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGA-VGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLST   82 (201)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGC
T ss_pred             chHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccCccccccc
Confidence            57777666554    4576 69999999999988 599999999999999999986531             223433 4


Q ss_pred             CCcEEEEecCCCccccCCCcCC--CcEEEEeeeCCC
Q 024116          179 EADIVIAAAGVANLVRGSWLKP--GAVVLDVGTCPV  212 (272)
Q Consensus       179 ~ADIVIsa~g~p~~i~~~~vk~--g~vviDig~~~~  212 (272)
                      ++||++-+ ...+.|+.+.++.  ..+|+.-+-+|.
T Consensus        83 ~~DI~iPc-A~~~~I~~~~a~~i~ak~i~e~AN~p~  117 (201)
T d1c1da1          83 PCDVFAPC-AMGGVITTEVARTLDCSVVAGAANNVI  117 (201)
T ss_dssp             CCSEEEEC-SCSCCBCHHHHHHCCCSEECCSCTTCB
T ss_pred             cceeeecc-cccccccHHHHhhhhhheeeccCCCCc
Confidence            78998844 2334555543321  345555554443

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.57  E-value=3.1e-05  Score=62.52  Aligned_cols=94  Identities=18%  Similarity=0.254  Sum_probs=68.6

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHhh
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPEQ  175 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t-------------------~~l~~  175 (272)
                      .+|.+..++..+++...--.|.+|+|+|+|. +|..+++++...|+ +|+++.++.                   .+..+
T Consensus         9 ~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~-iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~   87 (182)
T d1vj0a2           9 AMCSGATAYHAFDEYPESFAGKTVVIQGAGP-LGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEE   87 (182)
T ss_dssp             HTTHHHHHHHHHHTCSSCCBTCEEEEECCSH-HHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHH
T ss_pred             hhcHHHHHHHHHHHHhCCCCCCEEEEECCCc-cchhheecccccccccccccccccccccccccccceEEEeccccchHH
Confidence            4677777778887665545799999999987 59999999999998 788887542                   12221


Q ss_pred             h---c------CCCcEEEEecCCCcccc--CCCcCCCcEEEEeeeC
Q 024116          176 I---T------SEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       176 ~---l------~~ADIVIsa~g~p~~i~--~~~vk~g~vviDig~~  210 (272)
                      .   +      +-+|+||.++|.+..+.  -+.++++-.++=+|..
T Consensus        88 ~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~  133 (182)
T d1vj0a2          88 RRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVA  133 (182)
T ss_dssp             HHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCC
T ss_pred             HHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeec
Confidence            1   1      13799999999887543  3567887777777754

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.38  E-value=0.00012  Score=57.62  Aligned_cols=71  Identities=13%  Similarity=0.118  Sum_probs=55.5

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------CCHhhhcCCCcEEEEecCCCcccc--CCCcCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------KNPEQITSEADIVIAAAGVANLVR--GSWLKP  200 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t---------------~~l~~~l~~ADIVIsa~g~p~~i~--~~~vk~  200 (272)
                      |+.+||.|.+ |.+++..|.+.|.++++++|+.               .+.++.+++||+||.++. |..++  -..+++
T Consensus         2 kIg~IG~G~m-G~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk-p~~~~~vl~~l~~   79 (152)
T d2ahra2           2 KIGIIGVGKM-ASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVLKPLHF   79 (152)
T ss_dssp             EEEEECCSHH-HHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHHTTSCC
T ss_pred             EEEEEeccHH-HHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc-hHhHHHHhhhccc
Confidence            6899999996 9999999999999999998762               456788899999999984 44321  123677


Q ss_pred             CcEEEEeeeC
Q 024116          201 GAVVLDVGTC  210 (272)
Q Consensus       201 g~vviDig~~  210 (272)
                      +.+++++...
T Consensus        80 ~~~iis~~ag   89 (152)
T d2ahra2          80 KQPIISMAAG   89 (152)
T ss_dssp             CSCEEECCTT
T ss_pred             ceeEeccccc
Confidence            8888887644

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=0.00037  Score=55.30  Aligned_cols=94  Identities=16%  Similarity=0.254  Sum_probs=64.2

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC---------------------Hh
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------------------PE  174 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~---------------------l~  174 (272)
                      ++|.....+..|++.++ -.|.+|+|+|+|+ +|..+++++...|++|+++.++...                     .+
T Consensus         9 l~cag~Ta~~al~~~~~-~~g~~vlI~GaG~-vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~   86 (168)
T d1piwa2           9 LLCGGLTVYSPLVRNGC-GPGKKVGIVGLGG-IGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGE   86 (168)
T ss_dssp             GGTHHHHHHHHHHHTTC-STTCEEEEECCSH-HHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHH
T ss_pred             HHHHHHHHHHHHHHhCc-CCCCEEEEECCCC-cchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHH
Confidence            35644445566776654 4799999999977 5999999999999999988765321                     12


Q ss_pred             hhcCCCcEEEEecCCCcc--cc--CCCcCCCcEEEEeeeCC
Q 024116          175 QITSEADIVIAAAGVANL--VR--GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       175 ~~l~~ADIVIsa~g~p~~--i~--~~~vk~g~vviDig~~~  211 (272)
                      ......|.+|.++|.+.-  ++  -+.++++-.++-+|...
T Consensus        87 ~~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1piwa2          87 KYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPE  127 (168)
T ss_dssp             HSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCC
T ss_pred             hhhcccceEEEEecCCccchHHHHHHHhhccceEEEecccc
Confidence            344557888887775442  22  23567766677788654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.31  E-value=0.0001  Score=59.49  Aligned_cols=95  Identities=24%  Similarity=0.241  Sum_probs=68.2

Q ss_pred             cccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHh
Q 024116          115 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPE  174 (272)
Q Consensus       115 ~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t-------------------~~l~  174 (272)
                      ++||.-...+..++..++. +|.+|+|+|+|+ +|...++++...|+ .|+++.++.                   ++..
T Consensus         8 ~l~~~~~ta~~a~~~a~~~-~g~~VlI~GaG~-vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~   85 (174)
T d1jqba2           8 MITDMMTTGFHGAELADIE-MGSSVVVIGIGA-VGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIE   85 (174)
T ss_dssp             TTTTHHHHHHHHHHHTTCC-TTCCEEEECCSH-HHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHH
T ss_pred             HhhhHHHHHHHHHHHhCCC-CCCEEEEEcCCc-chhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHH
Confidence            4566555556667766553 699999999987 59999999999998 688886542                   1222


Q ss_pred             ----hhc--CCCcEEEEecCCCcccc--CCCcCCCcEEEEeeeCC
Q 024116          175 ----QIT--SEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       175 ----~~l--~~ADIVIsa~g~p~~i~--~~~vk~g~vviDig~~~  211 (272)
                          +..  +-+|+||.++|.+..++  -+.++++-.++-+|...
T Consensus        86 ~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~  130 (174)
T d1jqba2          86 DQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHG  130 (174)
T ss_dssp             HHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCC
T ss_pred             HHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecC
Confidence                222  23899999999887653  34678888888888654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=0.00028  Score=56.02  Aligned_cols=94  Identities=16%  Similarity=0.105  Sum_probs=65.7

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC--------------------Hhh
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN--------------------PEQ  175 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~--------------------l~~  175 (272)
                      ++|-....++.|++.++ -.|.+|+|+|+|+ +|..+++++...|+++++..+..+.                    ...
T Consensus        12 l~Cag~Tay~al~~~~~-~~G~~VlI~GaG~-vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~   89 (168)
T d1uufa2          12 LLCAGITTYSPLRHWQA-GPGKKVGVVGIGG-LGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAA   89 (168)
T ss_dssp             GGTHHHHHHHHHHHTTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHT
T ss_pred             HHhHHHHHHHHHHHhCC-CCCCEEEEeccch-HHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHH
Confidence            35633334555665544 3699999999977 6999999999999988877655321                    123


Q ss_pred             hcCCCcEEEEecCCCccc--cCCCcCCCcEEEEeeeCC
Q 024116          176 ITSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       176 ~l~~ADIVIsa~g~p~~i--~~~~vk~g~vviDig~~~  211 (272)
                      ..+.+|++|.++|.+..+  --++++++-.++-+|...
T Consensus        90 ~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1uufa2          90 HLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPA  127 (168)
T ss_dssp             TTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-
T ss_pred             hcCCCceeeeeeecchhHHHHHHHHhcCCEEEEeccCC
Confidence            445689999999987654  345778877777788654

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.21  E-value=0.00024  Score=56.39  Aligned_cols=56  Identities=25%  Similarity=0.305  Sum_probs=45.0

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC--------------------------CCHhhhcCCCcEEEEec
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT--------------------------KNPEQITSEADIVIAAA  187 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t--------------------------~~l~~~l~~ADIVIsa~  187 (272)
                      +-+|+.|||+|. ||.+++..|...+ +++.+++.+.                          .+.++.+++||+||.+.
T Consensus         6 k~~KI~IIGaG~-VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvita   84 (154)
T d1pzga1           6 RRKKVAMIGSGM-IGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA   84 (154)
T ss_dssp             CCCEEEEECCSH-HHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred             CCCcEEEECCCH-HHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEec
Confidence            568999999977 6999999888888 5888886442                          24467889999999999


Q ss_pred             CCCc
Q 024116          188 GVAN  191 (272)
Q Consensus       188 g~p~  191 (272)
                      |.|.
T Consensus        85 g~~~   88 (154)
T d1pzga1          85 GLTK   88 (154)
T ss_dssp             SCSS
T ss_pred             cccc
Confidence            8653

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.18  E-value=0.00024  Score=59.62  Aligned_cols=57  Identities=25%  Similarity=0.257  Sum_probs=46.1

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------CHhhhcCCCcEEEEecCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------NPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------------~l~~~l~~ADIVIsa~g~p  190 (272)
                      |+||+++|.|++.=+|++++..|+++|++|.++.|+.+                   .+.+...+-|++|+..|.+
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnAG~~   77 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGGP   77 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECCCCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEEEcchHHHHHHHHHHhCCCcEEEeccccc
Confidence            78999999999887899999999999999999988631                   1234556778888777743

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.17  E-value=0.00015  Score=56.83  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=32.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      +.++||+|+|||+|. +|..-+..|++.||.|+++..
T Consensus         9 ~~l~gkrvLViGgG~-va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1           9 HQLKDKRILLIGGGE-VGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             ECCTTCEEEEEEESH-HHHHHHHHHGGGTCEEEEEEE
T ss_pred             eeeCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeC
Confidence            468999999999988 599999999999999999953

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.16  E-value=0.00016  Score=59.30  Aligned_cols=53  Identities=23%  Similarity=0.359  Sum_probs=45.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC----------------------------CCCHhhhcCCCcEEEEecC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------------TKNPEQITSEADIVIAAAG  188 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~----------------------------t~~l~~~l~~ADIVIsa~g  188 (272)
                      +|++|||+|.. |.++|..|.+.|.+|++..|+                            +.++.+.+++||+||.|++
T Consensus         8 ~KI~ViGaG~w-GtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavP   86 (189)
T d1n1ea2           8 NKAVVFGSGAF-GTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIP   86 (189)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSC
T ss_pred             ceEEEECCCHH-HHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCc
Confidence            68999999885 999999999999899998754                            1356788999999999998


Q ss_pred             CC
Q 024116          189 VA  190 (272)
Q Consensus       189 ~p  190 (272)
                      ..
T Consensus        87 s~   88 (189)
T d1n1ea2          87 TQ   88 (189)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00029  Score=59.56  Aligned_cols=39  Identities=23%  Similarity=0.255  Sum_probs=35.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ..|+||+++|.|+++-+|++++..|+++|++|.++.|+.
T Consensus         3 ~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            468999999999998889999999999999999998864

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.14  E-value=0.00024  Score=60.39  Aligned_cols=38  Identities=21%  Similarity=0.271  Sum_probs=35.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++|+||.++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         1 f~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~   38 (251)
T d1vl8a_           1 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRN   38 (251)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            47899999999998888999999999999999999876

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.13  E-value=0.00029  Score=59.40  Aligned_cols=58  Identities=17%  Similarity=0.322  Sum_probs=47.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC-----------------------HhhhcCCCcEEEEecC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN-----------------------PEQITSEADIVIAAAG  188 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~-----------------------l~~~l~~ADIVIsa~g  188 (272)
                      -+|+||+++|.|++.=+|++++..|+++|++|.++.|+.+.                       ..+....-|++|+..|
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG   82 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAG   82 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCceEEEEecCCHHHHHHHHHHHHHhcCCceEEEeeec
Confidence            36899999999998878999999999999999999987421                       1233456799998888


Q ss_pred             C
Q 024116          189 V  189 (272)
Q Consensus       189 ~  189 (272)
                      .
T Consensus        83 ~   83 (237)
T d1uzma1          83 L   83 (237)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00022  Score=59.94  Aligned_cols=44  Identities=23%  Similarity=0.256  Sum_probs=39.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhhh
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQI  176 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l~~~  176 (272)
                      +|+||.++|.|+++-+|++++..|+++|++|.++.|+.+.+++.
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   45 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQ   45 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence            68999999999998889999999999999999999887665443

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.10  E-value=0.00025  Score=56.71  Aligned_cols=92  Identities=14%  Similarity=0.156  Sum_probs=61.0

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH--------------------hhh
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP--------------------EQI  176 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l--------------------~~~  176 (272)
                      ||.....+..|++.+. -+|++|+|.|+++.||..+++++...|++|+.+.++.+.+                    ...
T Consensus        10 ~~~~~TA~~al~~~~~-~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~   88 (171)
T d1iz0a2          10 PVSFLTAYLALKRAQA-RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKA   88 (171)
T ss_dssp             HHHHHHHHHHHHHTTC-CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCC-CCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhc
Confidence            5555555666766433 4899999999877789999999999999988876543111                    112


Q ss_pred             cCCCcEEEEecCCCcc-ccCCCcCCCcEEEEeeeC
Q 024116          177 TSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       177 l~~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~~  210 (272)
                      -+.+|+|+.++|. .+ -.-++++++-.++.+|..
T Consensus        89 ~~g~D~v~d~~G~-~~~~~~~~l~~~G~~v~~G~~  122 (171)
T d1iz0a2          89 WGGLDLVLEVRGK-EVEESLGLLAHGGRLVYIGAA  122 (171)
T ss_dssp             TTSEEEEEECSCT-THHHHHTTEEEEEEEEEC---
T ss_pred             cccccccccccch-hHHHHHHHHhcCCcEEEEeCC
Confidence            3457888888873 22 122467777777777754

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.09  E-value=0.00023  Score=55.65  Aligned_cols=72  Identities=14%  Similarity=0.106  Sum_probs=53.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCccc---cCCCcCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANLV---RGSWLKP  200 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~~i---~~~~vk~  200 (272)
                      ||.|||.|.+ |.+++..|++.|.+|+++++..              .+..+.++++|+||++++.+...   ..-.-..
T Consensus         2 kIgiIG~G~m-G~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~~~~~~~~~~   80 (152)
T d1i36a2           2 RVGFIGFGEV-AQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARRAGRHV   80 (152)
T ss_dssp             EEEEESCSHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHHHHHHHHTTC
T ss_pred             EEEEEcHHHH-HHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHHHHHhhcccC
Confidence            6899999996 9999999999999999988664              24567889999999999754321   1000112


Q ss_pred             CcEEEEeeeC
Q 024116          201 GAVVLDVGTC  210 (272)
Q Consensus       201 g~vviDig~~  210 (272)
                      +.++||+...
T Consensus        81 ~~~~id~st~   90 (152)
T d1i36a2          81 RGIYVDINNI   90 (152)
T ss_dssp             CSEEEECSCC
T ss_pred             CceeeccCcC
Confidence            5688898654

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.09  E-value=0.00012  Score=62.62  Aligned_cols=39  Identities=23%  Similarity=0.163  Sum_probs=36.0

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++|+||+++|.|+++-+|++++..|+++|++|.++.|+.
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            579999999999888889999999999999999998863

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00017  Score=57.44  Aligned_cols=95  Identities=12%  Similarity=0.012  Sum_probs=63.1

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhh
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQI  176 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------~~l~~~  176 (272)
                      +||.+..+...|.+..---.|.+|+|.|+|+.+|..+++++...|++|+++.++.                   +++.+.
T Consensus         9 ~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~   88 (179)
T d1qora2           9 SFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVER   88 (179)
T ss_dssp             HHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEECCCCCHHHH
Confidence            4677777777776543334699999999999889999999999999999886542                   333332


Q ss_pred             ----c--CCCcEEEEecCCCcc-ccCCCcCCCcEEEEeeeC
Q 024116          177 ----T--SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       177 ----l--~~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~~  210 (272)
                          +  +..|+|+.++|.+.+ -..+.++++-.++-++..
T Consensus        89 v~~~t~g~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~  129 (179)
T d1qora2          89 LKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGNS  129 (179)
T ss_dssp             HHHHTTTCCEEEEEECSCGGGHHHHHHTEEEEEEEEECCCT
T ss_pred             HHHHhCCCCeEEEEeCccHHHHHHHHHHHhcCCeeeecccc
Confidence                2  235888888876543 223455554444444433

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.06  E-value=0.00019  Score=61.14  Aligned_cols=42  Identities=17%  Similarity=0.299  Sum_probs=37.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP  173 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l  173 (272)
                      .+|+||+++|.|+++-+|++++..|+++|++|+++.|+.+++
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~   46 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADA   46 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTH
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            478999999999988889999999999999999999876444

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.06  E-value=0.00041  Score=61.25  Aligned_cols=76  Identities=16%  Similarity=0.241  Sum_probs=60.7

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhC-C-CEEEEEeCCC------------------CCHhhhcCCCcEEEEecCCCc-cc
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRH-H-ATVSIVHALT------------------KNPEQITSEADIVIAAAGVAN-LV  193 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~-g-a~V~v~~~~t------------------~~l~~~l~~ADIVIsa~g~p~-~i  193 (272)
                      .-+++.|||+|.- ++.-+..|... . .+|.+.+|+.                  .+..+.++.|||||++|++.. ++
T Consensus       124 ~~~~l~iiGaG~Q-A~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~~P~~  202 (320)
T d1omoa_         124 NSSVFGFIGCGTQ-AYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSRKPVV  202 (320)
T ss_dssp             TCCEEEEECCSHH-HHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCSSCCB
T ss_pred             CccEEEEecCccc-HHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCccccc
Confidence            4578999999885 98888877653 3 3899998773                  234577899999999999655 58


Q ss_pred             cCCCcCCCcEEEEeeeCC
Q 024116          194 RGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       194 ~~~~vk~g~vviDig~~~  211 (272)
                      +.+|+++|+.|.=+|.+.
T Consensus       203 ~~~~l~~G~hv~~iGs~~  220 (320)
T d1omoa_         203 KAEWVEEGTHINAIGADG  220 (320)
T ss_dssp             CGGGCCTTCEEEECSCCS
T ss_pred             chhhcCCCCeEeecCCcc
Confidence            999999999999999753

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00044  Score=57.35  Aligned_cols=57  Identities=12%  Similarity=0.160  Sum_probs=48.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC---------------------CCHhhhcCCCcEEEEecCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT---------------------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t---------------------~~l~~~l~~ADIVIsa~g~  189 (272)
                      .+++|+|+|.|++|.+|+.++..|.++|.  +|++..|+.                     +++.+.++.+|+||.++|.
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~   90 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   90 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccccccccc
Confidence            36789999999999999999999999994  899998753                     2455778999999998875

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.02  E-value=0.00017  Score=57.62  Aligned_cols=95  Identities=13%  Similarity=0.114  Sum_probs=65.0

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC-------------------CCCHhhhc
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-------------------TKNPEQIT  177 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~-------------------t~~l~~~l  177 (272)
                      ||.+..++..|.+...--+|.+|+|.|+++.||..+++++...|++|.++.+.                   .+++.+.+
T Consensus         7 ~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v   86 (183)
T d1pqwa_           7 GVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEI   86 (183)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHH
Confidence            55555555565544333468999999986668999999999999998877543                   13343333


Q ss_pred             ------CCCcEEEEecCCCcc-ccCCCcCCCcEEEEeeeCC
Q 024116          178 ------SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       178 ------~~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~~~  211 (272)
                            +..|+|+.++|.+.+ .--+.++++..++.+|...
T Consensus        87 ~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~G~~~  127 (183)
T d1pqwa_          87 LELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKD  127 (183)
T ss_dssp             HHHTTTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGG
T ss_pred             HHHhCCCCEEEEEecccchHHHHHHHHhcCCCEEEEEccCC
Confidence                  348999999986543 1234677877888888543

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.01  E-value=0.00033  Score=53.22  Aligned_cols=53  Identities=26%  Similarity=0.184  Sum_probs=41.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------C-Hhh-hcCCCcEEEEecCCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------N-PEQ-ITSEADIVIAAAGVA  190 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~--------------------~-l~~-~l~~ADIVIsa~g~p  190 (272)
                      |+++|+|.|.. |+.++..|.++|..|++++.+.+                    + |.+ .+.+||.||.+++..
T Consensus         1 k~~iIiG~G~~-G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~   75 (134)
T d2hmva1           1 KQFAVIGLGRF-GGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN   75 (134)
T ss_dssp             CCEEEECCSHH-HHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSC
T ss_pred             CEEEEECCCHH-HHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCch
Confidence            78999999885 99999999999999999986531                    1 222 367788888777743

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.01  E-value=0.00026  Score=56.77  Aligned_cols=75  Identities=15%  Similarity=0.166  Sum_probs=57.6

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------------------CHhhhcCCCcEEEEecCCCcc-
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------------NPEQITSEADIVIAAAGVANL-  192 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~----------------------~l~~~l~~ADIVIsa~g~p~~-  192 (272)
                      -++|-+||-|.+ |.+++..|++.|.+|++++|+.+                      ++.+.+.++|++|..+..+.- 
T Consensus         2 ~~nIg~IGlG~M-G~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v   80 (176)
T d2pgda2           2 QADIALIGLAVM-GQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAV   80 (176)
T ss_dssp             CBSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHH
T ss_pred             CCcEEEEeEhHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHH
Confidence            368999999886 99999999999999999998742                      234567888999988765432 


Q ss_pred             --cc---CCCcCCCcEEEEeeeCC
Q 024116          193 --VR---GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       193 --i~---~~~vk~g~vviDig~~~  211 (272)
                        +.   .+..++|.++||.+...
T Consensus        81 ~~v~~~l~~~~~~g~iiid~sT~~  104 (176)
T d2pgda2          81 DNFIEKLVPLLDIGDIIIDGGNSE  104 (176)
T ss_dssp             HHHHHHHHHHCCTTCEEEECSCCC
T ss_pred             HHHHHHHHhccccCcEEEecCcch
Confidence              11   12457899999998653

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.98  E-value=0.00018  Score=60.96  Aligned_cols=39  Identities=26%  Similarity=0.263  Sum_probs=35.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+|+||+++|.|+++-+|++++..|+++|++|.++.|+.
T Consensus         1 mdl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           1 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            368999999999988789999999999999999998863

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=96.97  E-value=0.00018  Score=61.46  Aligned_cols=38  Identities=24%  Similarity=0.144  Sum_probs=35.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++|+||.++|.|++.-+|++++..|+++|++|.++.|+
T Consensus         4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   41 (259)
T d2ae2a_           4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRN   41 (259)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            47999999999998878999999999999999999886

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.97  E-value=0.0004  Score=54.68  Aligned_cols=94  Identities=15%  Similarity=0.096  Sum_probs=62.5

Q ss_pred             cccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------CHh-
Q 024116          115 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------NPE-  174 (272)
Q Consensus       115 ~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------------~l~-  174 (272)
                      -+||+...++..+++.+. -.|.+|+|+|+|. +|..+++++...|++|+++.++..                   +.. 
T Consensus         8 ~l~ca~~Ta~~al~~~~~-~~g~~VlV~GaG~-vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~   85 (166)
T d1llua2           8 PILCAGVTVYKGLKQTNA-RPGQWVAISGIGG-LGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVE   85 (166)
T ss_dssp             GGGTHHHHHHHHHHHHTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHH
T ss_pred             HHHHHHHHHHHHHHHhCC-CCCCEEEEeeccc-cHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHH
Confidence            358876666777776654 4699999999977 599999999999999998876531                   111 


Q ss_pred             ---hhcCCCcEEEEecCCCccc--cCCCcCCCcEEEEeeeC
Q 024116          175 ---QITSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       175 ---~~l~~ADIVIsa~g~p~~i--~~~~vk~g~vviDig~~  210 (272)
                         +.....|.+|..++.+..+  --+.++++-.++-+|.+
T Consensus        86 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G~~  126 (166)
T d1llua2          86 AIQRDIGGAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLP  126 (166)
T ss_dssp             HHHHHHSSEEEEEECCSCHHHHHHHHTTEEEEEEEEECCCC
T ss_pred             HHHHhhcCCcccccccccchHHHHHHHHhcCCcEEEEEEec
Confidence               2223345555555544433  22466776666667754

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=96.96  E-value=0.00079  Score=56.94  Aligned_cols=93  Identities=16%  Similarity=0.148  Sum_probs=61.9

Q ss_pred             cCCHHHHHHHHH----Hh--CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------CH-hh
Q 024116          117 PCTPKGCIELLI----RS--GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------NP-EQ  175 (272)
Q Consensus       117 p~Ta~g~~~~l~----~~--~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~--------------~l-~~  175 (272)
                      |.|++|+...++    +.  ..+|+||+|+|-|.|. ||..++++|.++|++|++++.+..              +. +-
T Consensus        14 ~aTg~GV~~~~~~~~~~~~g~~~l~g~~v~IqG~Gn-VG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~~~~~   92 (230)
T d1leha1          14 PVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGN-VAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAI   92 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGT
T ss_pred             cchHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccCCccc
Confidence            678899777654    32  4579999999999988 599999999999999998875421              11 22


Q ss_pred             hcCCCcEEEEecCCCccccCCCcCC--CcEEEEeeeCC
Q 024116          176 ITSEADIVIAAAGVANLVRGSWLKP--GAVVLDVGTCP  211 (272)
Q Consensus       176 ~l~~ADIVIsa~g~p~~i~~~~vk~--g~vviDig~~~  211 (272)
                      +-.++||++=+.. .+.|+.+.+..  ..+|+-.+-|+
T Consensus        93 ~~~~cDIl~PcA~-~~~I~~~~~~~l~ak~Ive~ANn~  129 (230)
T d1leha1          93 YGVTCDIFAPCAL-GAVLNDFTIPQLKAKVIAGSADNQ  129 (230)
T ss_dssp             TTCCCSEEEECSC-SCCBSTTHHHHCCCSEECCSCSCC
T ss_pred             ccccccEeccccc-ccccChHHhhccCccEEEecccCC
Confidence            3467899773332 33455443321  23555555343

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00015  Score=57.82  Aligned_cols=94  Identities=24%  Similarity=0.191  Sum_probs=62.8

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhh
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQI  176 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------~~l~~~  176 (272)
                      +||........|.+..---+|.+|+|.|+++.||..+++++..+|++|+++.++.                   +++.+.
T Consensus         9 l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~   88 (174)
T d1yb5a2           9 IGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDK   88 (174)
T ss_dssp             THHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHH
Confidence            4665555666665443223799999999866689999999999999988776532                   223222


Q ss_pred             c------CCCcEEEEecCCCccc-cCCCcCCCcEEEEeee
Q 024116          177 T------SEADIVIAAAGVANLV-RGSWLKPGAVVLDVGT  209 (272)
Q Consensus       177 l------~~ADIVIsa~g~p~~i-~~~~vk~g~vviDig~  209 (272)
                      +      +..|+|+.++|.+.+- --+.++++-.++.+|.
T Consensus        89 i~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~iv~~G~  128 (174)
T d1yb5a2          89 IKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGS  128 (174)
T ss_dssp             HHHHHCTTCEEEEEESCHHHHHHHHHHHEEEEEEEEECCC
T ss_pred             hhhhhccCCceEEeecccHHHHHHHHhccCCCCEEEEEec
Confidence            2      2378888888854321 1245677777777874

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=96.95  E-value=0.00023  Score=60.83  Aligned_cols=38  Identities=18%  Similarity=0.297  Sum_probs=35.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +|+||.++|.|++.-+|++++..|+++|++|.++.|+.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            68999999999988889999999999999999998863

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.94  E-value=0.00065  Score=53.62  Aligned_cols=96  Identities=15%  Similarity=0.124  Sum_probs=67.8

Q ss_pred             cccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHh
Q 024116          115 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPE  174 (272)
Q Consensus       115 ~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t-------------------~~l~  174 (272)
                      .+||........+++.++ -.|.+|+|+|+++.+|..+++++...|+ +|+++.++.                   ++..
T Consensus         8 ~l~c~~~Ta~~al~~~~~-~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~   86 (170)
T d1jvba2           8 PLTCSGITTYRAVRKASL-DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPL   86 (170)
T ss_dssp             GGGTHHHHHHHHHHHTTC-CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHH
T ss_pred             HHHHHHHHHHHHHHHhCC-CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHH
Confidence            457876666777776553 4689999999766679999999998994 888887542                   2222


Q ss_pred             hhc------CCCcEEEEecCCCcccc--CCCcCCCcEEEEeeeCC
Q 024116          175 QIT------SEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       175 ~~l------~~ADIVIsa~g~p~~i~--~~~vk~g~vviDig~~~  211 (272)
                      +.+      ...|++|.++|.+..++  -++++++-.++=+|...
T Consensus        87 ~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~  131 (170)
T d1jvba2          87 AEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFG  131 (170)
T ss_dssp             HHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSC
T ss_pred             HHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEEEEecccc
Confidence            221      34799999998876543  34678887777788653

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.93  E-value=0.00043  Score=54.65  Aligned_cols=73  Identities=18%  Similarity=0.203  Sum_probs=53.4

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCCC----------------CH-hhhcCCCcEEEEecCCCc---ccc
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALTK----------------NP-EQITSEADIVIAAAGVAN---LVR  194 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t~----------------~l-~~~l~~ADIVIsa~g~p~---~i~  194 (272)
                      |++.|||.|.+ |..++..|.+.|.  +|+.++++.+                +. .....++|+||-+++...   .+.
T Consensus         2 k~I~IIG~G~m-G~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~vl~   80 (171)
T d2g5ca2           2 QNVLIVGVGFM-GGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAK   80 (171)
T ss_dssp             CEEEEESCSHH-HHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHHH
T ss_pred             CEEEEEccCHH-HHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCchhhhhhhh
Confidence            57999999886 9999999999984  7887876531                11 233457999999988322   221


Q ss_pred             --CCCcCCCcEEEEeeeC
Q 024116          195 --GSWLKPGAVVLDVGTC  210 (272)
Q Consensus       195 --~~~vk~g~vviDig~~  210 (272)
                        .+.++++++|+|++..
T Consensus        81 ~l~~~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          81 KLSYILSEDATVTDQGSV   98 (171)
T ss_dssp             HHHHHSCTTCEEEECCSC
T ss_pred             hhhccccccccccccccc
Confidence              2356889999999964

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00072  Score=55.25  Aligned_cols=32  Identities=25%  Similarity=0.287  Sum_probs=29.4

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      |+|.|||+|-+ |+.+|..++..|.+|++++++
T Consensus         5 kkvaViGaG~m-G~~iA~~~a~~G~~V~l~D~~   36 (192)
T d1f0ya2           5 KHVTVIGGGLM-GAGIAQVAAATGHTVVLVDQT   36 (192)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEECcCHH-HHHHHHHHHhCCCcEEEEECC
Confidence            79999999885 999999999999999999764

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.92  E-value=0.0011  Score=51.98  Aligned_cols=55  Identities=25%  Similarity=0.401  Sum_probs=42.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC-----------------------CCHhhhcCCCcEEEEecCCCc
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-----------------------KNPEQITSEADIVIAAAGVAN  191 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t-----------------------~~l~~~l~~ADIVIsa~g~p~  191 (272)
                      .||+|||++|.||..++..|..++.  ++.+++.+.                       .+.++.+++|||||.+.|.|.
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~   80 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC
Confidence            4899999744579999999998884  677776431                       345678999999998888653

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.90  E-value=0.00095  Score=52.66  Aligned_cols=55  Identities=22%  Similarity=0.342  Sum_probs=43.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC-------------------------CCHhhhcCCCcEEEEecCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT-------------------------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t-------------------------~~l~~~l~~ADIVIsa~g~  189 (272)
                      ..||.|||+|. ||.+++.+|..++ +++.+++.+.                         .+.++.+++||+||.+.|.
T Consensus         3 ~~KI~IIGaG~-VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~   81 (150)
T d1t2da1           3 KAKIVLVGSGM-IGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGF   81 (150)
T ss_dssp             CCEEEEECCSH-HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSC
T ss_pred             CCeEEEECCCH-HHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEeccc
Confidence            46899999977 6999999998888 4888887542                         1335789999999999996


Q ss_pred             Cc
Q 024116          190 AN  191 (272)
Q Consensus       190 p~  191 (272)
                      |.
T Consensus        82 ~~   83 (150)
T d1t2da1          82 TK   83 (150)
T ss_dssp             SS
T ss_pred             cc
Confidence            54

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.89  E-value=0.00054  Score=53.85  Aligned_cols=55  Identities=20%  Similarity=0.344  Sum_probs=43.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCC--CEEEEEeCCC------------------------CCHhhhcCCCcEEEEecC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALT------------------------KNPEQITSEADIVIAAAG  188 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~g--a~V~v~~~~t------------------------~~l~~~l~~ADIVIsa~g  188 (272)
                      +.+||.|||+|. ||.+++..|+.+|  .++.+++++.                        .+ .+.+++||+||.++|
T Consensus         4 ~~~KI~IIGaG~-VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d-~~~~~~adivvitag   81 (146)
T d1ez4a1           4 NHQKVVLVGDGA-VGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGE-YSDCKDADLVVITAG   81 (146)
T ss_dssp             TBCEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECC-GGGGTTCSEEEECCC
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeecc-HHHhccccEEEEecc
Confidence            467999999977 6999999999988  3899998652                        12 367899999999998


Q ss_pred             CCc
Q 024116          189 VAN  191 (272)
Q Consensus       189 ~p~  191 (272)
                      .|.
T Consensus        82 ~~~   84 (146)
T d1ez4a1          82 APQ   84 (146)
T ss_dssp             C--
T ss_pred             ccc
Confidence            653

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.89  E-value=0.00065  Score=53.37  Aligned_cols=56  Identities=25%  Similarity=0.338  Sum_probs=44.5

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC------------------------CCHhhhcCCCcEEEEecC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT------------------------KNPEQITSEADIVIAAAG  188 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t------------------------~~l~~~l~~ADIVIsa~g  188 (272)
                      .++||.|||+|. ||..++..|+.++.  ++.+++.+.                        ..-.+.+++||+||.++|
T Consensus         5 ~~~KI~IiGaG~-vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag   83 (148)
T d1ldna1           5 GGARVVVIGAGF-VGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG   83 (148)
T ss_dssp             TSCEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred             CCCeEEEECcCH-HHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence            578999999977 69999999998883  788887542                        122578999999999988


Q ss_pred             CCc
Q 024116          189 VAN  191 (272)
Q Consensus       189 ~p~  191 (272)
                      .|.
T Consensus        84 ~~~   86 (148)
T d1ldna1          84 ANQ   86 (148)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            653

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=96.88  E-value=0.00038  Score=56.34  Aligned_cols=94  Identities=18%  Similarity=0.126  Sum_probs=62.8

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEE-cCCcccHHHHHHHHHhCCCEEEEEeCCCCCHh--------------------
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVI-GRSNIVGLPTSLLLQRHHATVSIVHALTKNPE--------------------  174 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~Vi-G~g~~vG~~la~~L~~~ga~V~v~~~~t~~l~--------------------  174 (272)
                      +||++...+..|.+..---.|.+++|+ |+++.||..+.+++...|++|+.+-++.+..+                    
T Consensus         9 l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~   88 (189)
T d1gu7a2           9 ISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQN   88 (189)
T ss_dssp             CTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHH
T ss_pred             hhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEecccc
Confidence            477777777777766544468899998 55566799999999999999887755432211                    


Q ss_pred             ----------hh----cCCCcEEEEecCCCcc-ccCCCcCCCcEEEEeee
Q 024116          175 ----------QI----TSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGT  209 (272)
Q Consensus       175 ----------~~----l~~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~  209 (272)
                                +.    =..+|+|+.++|.+.+ -.-+.++++-.++.+|.
T Consensus        89 ~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~~~~~~~~~l~~~G~~v~~G~  138 (189)
T d1gu7a2          89 NSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGG  138 (189)
T ss_dssp             HCGGGHHHHHHHHHHHTCCEEEEEESSCHHHHHHHHHTSCTTCEEEECCC
T ss_pred             chhHHHHHHHHHHhhccCCceEEEECCCcchhhhhhhhhcCCcEEEEECC
Confidence                      00    1236778877775543 12245677777777774

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.88  E-value=0.0004  Score=54.51  Aligned_cols=95  Identities=15%  Similarity=0.140  Sum_probs=65.6

Q ss_pred             cccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CC---
Q 024116          115 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KN---  172 (272)
Q Consensus       115 ~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------~~---  172 (272)
                      -+||+...++..++..++. .|.+|+|.|+|. +|..+++.+...|++|+++.++.                   .+   
T Consensus         8 ~l~~~~~Ta~~al~~~~~~-~g~~vlv~G~G~-iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~   85 (168)
T d1rjwa2           8 PIFCAGVTTYKALKVTGAK-PGEWVAIYGIGG-LGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAK   85 (168)
T ss_dssp             GGGTHHHHHHHHHHHHTCC-TTCEEEEECCST-THHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHH
T ss_pred             HHHHHHHHHHHHHHHhCCC-CCCEEEEeeccc-chhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhh
Confidence            3588777778888877754 689999999977 59999999999999988886542                   12   


Q ss_pred             -HhhhcCCCcEEEEecCCCcccc--CCCcCCCcEEEEeeeCC
Q 024116          173 -PEQITSEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       173 -l~~~l~~ADIVIsa~g~p~~i~--~~~vk~g~vviDig~~~  211 (272)
                       +.+..+..|.+|..++.+..+.  -+.++++..++-+|.+.
T Consensus        86 ~~~~~~~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~~~  127 (168)
T d1rjwa2          86 FMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPP  127 (168)
T ss_dssp             HHHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCS
T ss_pred             hcccccCCCceEEeecCCHHHHHHHHHHhccCCceEeccccc
Confidence             2333455555565555554332  23467777777788654

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=96.87  E-value=0.0012  Score=58.79  Aligned_cols=76  Identities=13%  Similarity=0.171  Sum_probs=60.1

Q ss_pred             ccceEEEEcCCcccHHHHHHHHH-hCC-CEEEEEeCCC---------------------CCHhhhcCCCcEEEEecCCC-
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQ-RHH-ATVSIVHALT---------------------KNPEQITSEADIVIAAAGVA-  190 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~-~~g-a~V~v~~~~t---------------------~~l~~~l~~ADIVIsa~g~p-  190 (272)
                      .-+++.|||+|.- ++.-+..+. -.+ .+|.+.+|+.                     .++++.++.||||+++|..+ 
T Consensus       127 da~~l~iiG~G~Q-A~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas~s  205 (340)
T d1x7da_         127 NARKMALIGNGAQ-SEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA  205 (340)
T ss_dssp             TCCEEEEECCSTT-HHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS
T ss_pred             CCceEEEEcccHH-HHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccccCC
Confidence            4589999999886 887666554 344 4899998762                     46789999999999888654 


Q ss_pred             --ccccCCCcCCCcEEEEeeeCC
Q 024116          191 --NLVRGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       191 --~~i~~~~vk~g~vviDig~~~  211 (272)
                        .+++.+|++||+.|.=+|.+.
T Consensus       206 ~~Pv~~~~~l~pG~hI~aiGs~~  228 (340)
T d1x7da_         206 YATIITPDMLEPGMHLNAVGGDC  228 (340)
T ss_dssp             EEEEECGGGCCTTCEEEECSCCB
T ss_pred             CCcccchhhcCCCCEEeecccch
Confidence              368999999999999998653

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.86  E-value=0.00025  Score=61.10  Aligned_cols=39  Identities=23%  Similarity=0.204  Sum_probs=35.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+|+||+++|.|+++-+|+++|..|+++|++|+++.|+.
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            378999999999888789999999999999999999873

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00036  Score=59.04  Aligned_cols=37  Identities=19%  Similarity=0.239  Sum_probs=35.0

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      |+||+++|.|+++-+|++++..|+++|++|.+++|+.
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            8999999999999899999999999999999999874

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.84  E-value=0.00076  Score=57.35  Aligned_cols=38  Identities=24%  Similarity=0.403  Sum_probs=34.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .|+||.++|.|++.-+|++++..|+++|++|.+++|+.
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47999999999988789999999999999999999863

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.83  E-value=0.00072  Score=57.00  Aligned_cols=38  Identities=16%  Similarity=0.219  Sum_probs=34.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .|+||+++|.|++.-+|++++..|+++|++|.++.|+.
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47999999999887789999999999999999999863

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.82  E-value=0.00022  Score=60.93  Aligned_cols=38  Identities=13%  Similarity=0.106  Sum_probs=35.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++|+||+++|.|++.-+|+++|..|+++|++|.++.|+
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~   41 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARN   41 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            57999999999998888999999999999999999876

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.81  E-value=0.00066  Score=57.89  Aligned_cols=38  Identities=26%  Similarity=0.288  Sum_probs=34.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+|+||+++|.|+++-+|++++..|+++|++|.++.++
T Consensus        14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~   51 (272)
T d1g0oa_          14 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYAN   51 (272)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            46899999999988888999999999999999998765

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=96.79  E-value=0.00087  Score=56.74  Aligned_cols=37  Identities=22%  Similarity=0.310  Sum_probs=34.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      |+||.++|-|++.-+|++++..|+++|++|.++.++.
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~   39 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP   39 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            7999999999888889999999999999999998874

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.0021  Score=50.71  Aligned_cols=86  Identities=22%  Similarity=0.383  Sum_probs=61.7

Q ss_pred             HHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHhhhc------
Q 024116          124 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPEQIT------  177 (272)
Q Consensus       124 ~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t-------------------~~l~~~l------  177 (272)
                      ++.+++.++ -.|.+|+|+|+|. +|..+++++..+|+ +|+++.++.                   .+..+..      
T Consensus        16 ~~a~~~~~~-~~gd~VlI~G~G~-iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~   93 (171)
T d1pl8a2          16 IHACRRGGV-TLGHKVLVCGAGP-IGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQ   93 (171)
T ss_dssp             HHHHHHHTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHH
T ss_pred             HHHHHHhCC-CCCCEEEEECCCc-cHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCccccccccccccccccccccc
Confidence            455666654 3688999999977 59999999999998 788887642                   1221111      


Q ss_pred             --CCCcEEEEecCCCcccc--CCCcCCCcEEEEeeeCC
Q 024116          178 --SEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       178 --~~ADIVIsa~g~p~~i~--~~~vk~g~vviDig~~~  211 (272)
                        ..+|+||.++|.+..+.  -++++++-.++=+|...
T Consensus        94 ~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~  131 (171)
T d1pl8a2          94 LGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGS  131 (171)
T ss_dssp             HTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCC
T ss_pred             CCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCC
Confidence              35899999999886543  35678877777788654

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.79  E-value=0.0009  Score=52.14  Aligned_cols=54  Identities=20%  Similarity=0.367  Sum_probs=41.6

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC-------------------------CCHhhhcCCCcEEEEecCCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT-------------------------KNPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t-------------------------~~l~~~l~~ADIVIsa~g~p  190 (272)
                      +||.|||+|. ||.++|.+|+.++ +++..++.+.                         .+-.+.+++||+||.+.|.|
T Consensus         2 ~KI~IIGaG~-VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~advvvitag~~   80 (142)
T d1uxja1           2 KKISIIGAGF-VGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGAP   80 (142)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CeEEEECCCH-HHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCEEEEeeecc
Confidence            6899999977 6999999998888 5877776432                         11246789999999999865


Q ss_pred             c
Q 024116          191 N  191 (272)
Q Consensus       191 ~  191 (272)
                      .
T Consensus        81 ~   81 (142)
T d1uxja1          81 R   81 (142)
T ss_dssp             -
T ss_pred             C
Confidence            3

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.79  E-value=0.0018  Score=50.88  Aligned_cols=86  Identities=20%  Similarity=0.293  Sum_probs=62.5

Q ss_pred             HHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------CHh---hhc--
Q 024116          124 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPE---QIT--  177 (272)
Q Consensus       124 ~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~---------------------~l~---~~l--  177 (272)
                      ++.+++.++ -.|.+|+|+|.|. +|..+++++...|++|+++.++..                     +..   +.+  
T Consensus        16 ~~a~~~~~~-~~g~~vlV~G~G~-vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~   93 (170)
T d1e3ja2          16 VHACRRAGV-QLGTTVLVIGAGP-IGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRS   93 (170)
T ss_dssp             HHHHHHHTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHH
T ss_pred             HHHHHHhCC-CCCCEEEEEcccc-cchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhc
Confidence            555666654 4688999999877 599999999999999999976521                     111   111  


Q ss_pred             ---CCCcEEEEecCCCcccc--CCCcCCCcEEEEeeeCC
Q 024116          178 ---SEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       178 ---~~ADIVIsa~g~p~~i~--~~~vk~g~vviDig~~~  211 (272)
                         ..+|+||.++|.+..+.  -++++++-.++=+|.++
T Consensus        94 ~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~  132 (170)
T d1e3ja2          94 AIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGS  132 (170)
T ss_dssp             HSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCS
T ss_pred             ccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCC
Confidence               34899999999887543  35678887777788654

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=96.79  E-value=0.00036  Score=58.87  Aligned_cols=38  Identities=24%  Similarity=0.312  Sum_probs=35.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .|+||+++|.|+++-+|+++|+.|+++|++|.++.|+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE   39 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            37999999999999889999999999999999998874

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.78  E-value=0.0011  Score=54.22  Aligned_cols=53  Identities=17%  Similarity=0.181  Sum_probs=44.5

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC----------------------------------CCCHhhhcCCCcEE
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------------------TKNPEQITSEADIV  183 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~----------------------------------t~~l~~~l~~ADIV  183 (272)
                      ||.|||.|- ||.|+|..|+++|.+|+..+.+                                  +.++.+.+++||++
T Consensus         2 kI~ViGlG~-vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           2 RISIFGLGY-VGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             EEEEECCST-THHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             EEEEECCCH-hHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            699999988 5999999999999999988653                                  13456778899999


Q ss_pred             EEecCCCc
Q 024116          184 IAAAGVAN  191 (272)
Q Consensus       184 Isa~g~p~  191 (272)
                      +.+++.|.
T Consensus        81 ~i~VpTP~   88 (202)
T d1mv8a2          81 FICVGTPS   88 (202)
T ss_dssp             EECCCCCB
T ss_pred             EEecCccc
Confidence            99998773

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.77  E-value=0.00064  Score=57.33  Aligned_cols=38  Identities=26%  Similarity=0.455  Sum_probs=33.6

Q ss_pred             CCCCccceEEEEcCC---cccHHHHHHHHHhCCCEEEEEeCC
Q 024116          131 GVEIMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g---~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .++|+||+++|.|++   |+ |++++..|+++|++|.++.++
T Consensus         3 ~~~L~gK~alITGas~~~GI-G~aiA~~la~~Ga~V~i~~~~   43 (256)
T d1ulua_           3 TVDLSGKKALVMGVTNQRSL-GFAIAAKLKEAGAEVALSYQA   43 (256)
T ss_dssp             EECCTTCEEEEESCCCSSSH-HHHHHHHHHHTTCEEEEEESS
T ss_pred             CcCCCCCEEEEECCCCCchH-HHHHHHHHHHCCCEEEEEeCc
Confidence            368999999999986   54 999999999999999888765

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=96.77  E-value=0.0007  Score=54.19  Aligned_cols=92  Identities=16%  Similarity=0.104  Sum_probs=62.8

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhh------------------h----
Q 024116          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQ------------------I----  176 (272)
Q Consensus       119 Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l~~------------------~----  176 (272)
                      ||+..+..|.+.+...+|.+|+|-|+++-||..+++++...||+|+...++.+..+.                  .    
T Consensus         7 TA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~   86 (167)
T d1tt7a2           7 TAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKAL   86 (167)
T ss_dssp             HHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSS
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcc
Confidence            566667778888877788899999988889999999999999998888776432210                  0    


Q ss_pred             -cCCCcEEEEecCCCcc-ccCCCcCCCcEEEEeeeC
Q 024116          177 -TSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       177 -l~~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~~  210 (272)
                       -+..|+||..+|.+.+ -.-+.++++-.++-+|..
T Consensus        87 ~~~gvd~vid~vgg~~~~~~~~~l~~~G~iv~~G~~  122 (167)
T d1tt7a2          87 SKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLT  122 (167)
T ss_dssp             CCCCEEEEEESCCTHHHHHHHTTEEEEEEEEECCCS
T ss_pred             cCCCceEEEecCcHHHHHHHHHHhccCceEEEeecc
Confidence             1235666666665433 123455666555556543

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.77  E-value=0.00079  Score=57.46  Aligned_cols=39  Identities=21%  Similarity=0.270  Sum_probs=35.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+|+||.++|.|++.-+|++++..|+++|++|.++.|+.
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            479999999999888889999999999999999998763

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.76  E-value=0.00085  Score=54.20  Aligned_cols=92  Identities=18%  Similarity=0.139  Sum_probs=60.9

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHh------------------hh----
Q 024116          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPE------------------QI----  176 (272)
Q Consensus       119 Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l~------------------~~----  176 (272)
                      ||+-.++.|.+.+..-+|.+|+|-|+++-||..+.+++...|++|+.+.++.+..+                  +.    
T Consensus        15 TA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~   94 (176)
T d1xa0a2          15 TAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPL   94 (176)
T ss_dssp             HHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------C
T ss_pred             HHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHh
Confidence            34444455656677778999999999888999999999999999888776543221                  11    


Q ss_pred             -cCCCcEEEEecCCCcc-ccCCCcCCCcEEEEeeeC
Q 024116          177 -TSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       177 -l~~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~~  210 (272)
                       =+..|+|+..+|.+.+ -.-+.++++-.++.+|..
T Consensus        95 ~~~gvD~vid~vgg~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2          95 DKQRWAAAVDPVGGRTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             CSCCEEEEEECSTTTTHHHHHHTEEEEEEEEECSCC
T ss_pred             hccCcCEEEEcCCchhHHHHHHHhCCCceEEEeecc
Confidence             1235666666665543 123355666666677654

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.75  E-value=0.0013  Score=50.93  Aligned_cols=53  Identities=30%  Similarity=0.455  Sum_probs=42.4

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC--CEEEEEeCCC-------------------------CCHhhhcCCCcEEEEecCCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALT-------------------------KNPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~g--a~V~v~~~~t-------------------------~~l~~~l~~ADIVIsa~g~p  190 (272)
                      |+.|||+|. ||.+++..|+..+  .++.+++.+.                         .+.++.+++||+||.+.|.|
T Consensus         2 KI~IIGaG~-VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~   80 (142)
T d1guza1           2 KITVIGAGN-VGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP   80 (142)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred             EEEEECcCH-HHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence            799999976 6999999999988  3888887552                         13357889999999998865


Q ss_pred             c
Q 024116          191 N  191 (272)
Q Consensus       191 ~  191 (272)
                      .
T Consensus        81 ~   81 (142)
T d1guza1          81 R   81 (142)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.75  E-value=0.001  Score=52.43  Aligned_cols=77  Identities=21%  Similarity=0.271  Sum_probs=55.5

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCC---CEEEEEeCCC----------------CCHhhhcCCCcEEEEecCCCc--ccc
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHH---ATVSIVHALT----------------KNPEQITSEADIVIAAAGVAN--LVR  194 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~g---a~V~v~~~~t----------------~~l~~~l~~ADIVIsa~g~p~--~i~  194 (272)
                      |-||.|||++|.+|.-+.++|.++.   .++..+.++.                ........+.|+++.+.+...  ..-
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s~~~~   80 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKYA   80 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccchhhHH
Confidence            6789999999999999999998885   2455554331                122355678899999887422  133


Q ss_pred             CCCcCCCcEEEEeeeCCC
Q 024116          195 GSWLKPGAVVLDVGTCPV  212 (272)
Q Consensus       195 ~~~vk~g~vviDig~~~~  212 (272)
                      ++..+.|..|||.+....
T Consensus        81 ~~~~~~~~~VIDlSsdfR   98 (154)
T d2gz1a1          81 PYAVKAGVVVVDNTSYFR   98 (154)
T ss_dssp             HHHHHTTCEEEECSSTTT
T ss_pred             hhhccccceehhcChhhh
Confidence            445677999999998764

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.74  E-value=0.0014  Score=51.40  Aligned_cols=54  Identities=30%  Similarity=0.455  Sum_probs=41.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC-----------------------------CCHhhhcCCCcEEEEe
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-----------------------------KNPEQITSEADIVIAA  186 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t-----------------------------~~l~~~l~~ADIVIsa  186 (272)
                      ||.|||++|.||.+++..|+.++.  ++.+++.+.                             .+..+.+++||+||.+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVit   81 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVIIT   81 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEEC
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEEe
Confidence            799999855579999999999983  788886431                             1234678899999999


Q ss_pred             cCCCc
Q 024116          187 AGVAN  191 (272)
Q Consensus       187 ~g~p~  191 (272)
                      .|.|.
T Consensus        82 AG~~~   86 (145)
T d1hyea1          82 SGVPR   86 (145)
T ss_dssp             CSCCC
T ss_pred             ccccc
Confidence            88653

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00091  Score=56.74  Aligned_cols=39  Identities=23%  Similarity=0.175  Sum_probs=35.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      -.|+||.++|.|++.-+|++++..|+++|++|.++.|+.
T Consensus         2 ~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            358999999999988789999999999999999998864

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.00035  Score=59.10  Aligned_cols=38  Identities=26%  Similarity=0.192  Sum_probs=35.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ||+||.++|-|++.-+|++++..|+++|++|.++.|+.
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~   38 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSE   38 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            68999999999888889999999999999999998874

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.00089  Score=51.99  Aligned_cols=69  Identities=16%  Similarity=0.168  Sum_probs=53.0

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------CHhhhcCCCcEEEEecCCCcc---c
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAGVANL---V  193 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~---------------------~l~~~l~~ADIVIsa~g~p~~---i  193 (272)
                      ||+|+|+|.+ |..++..|++.|.+|+++.|...                     +..+.+..+|+||.++..+..   +
T Consensus         2 kI~IiGaG~i-G~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~~~~~~~   80 (167)
T d1ks9a2           2 KITVLGCGAL-GQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAV   80 (167)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGHHHHH
T ss_pred             EEEEECcCHH-HHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecccchHHHH
Confidence            7999999775 99999999999999999987641                     224667899999999987653   1


Q ss_pred             c--CCCcCCCcEEEEe
Q 024116          194 R--GSWLKPGAVVLDV  207 (272)
Q Consensus       194 ~--~~~vk~g~vviDi  207 (272)
                      +  ..++.+++.|+.+
T Consensus        81 ~~l~~~~~~~~~Iv~~   96 (167)
T d1ks9a2          81 KSLASTLPVTTPILLI   96 (167)
T ss_dssp             HHHHTTSCTTSCEEEE
T ss_pred             HhhccccCcccEEeec
Confidence            1  2356667777765

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.72  E-value=0.00073  Score=54.39  Aligned_cols=53  Identities=17%  Similarity=0.231  Sum_probs=44.6

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC-----------------------------CCCHhhhcCCCcEEEEecC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-----------------------------TKNPEQITSEADIVIAAAG  188 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~-----------------------------t~~l~~~l~~ADIVIsa~g  188 (272)
                      +|.|||+|.. |-++|..|.+.|.+|++..|.                             +.++.+.+++||+||.|++
T Consensus         2 kI~ViGaG~~-GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           2 IVSILGAGAM-GSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             EEEEESCCHH-HHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             EEEEECCCHH-HHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            7999999886 999999999999999998652                             1355788999999999998


Q ss_pred             CCc
Q 024116          189 VAN  191 (272)
Q Consensus       189 ~p~  191 (272)
                      ...
T Consensus        81 s~~   83 (180)
T d1txga2          81 TDG   83 (180)
T ss_dssp             GGG
T ss_pred             hhh
Confidence            643

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.71  E-value=0.00081  Score=52.80  Aligned_cols=54  Identities=24%  Similarity=0.266  Sum_probs=42.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC------------------------CCHhhhcCCCcEEEEecCCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT------------------------KNPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t------------------------~~l~~~l~~ADIVIsa~g~p  190 (272)
                      |||.|||+|. ||..++..|+.+|.  ++.+++...                        ..-.+.+++||+||.+.|.|
T Consensus         2 kKI~IIGaG~-VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~   80 (146)
T d1hyha1           2 RKIGIIGLGN-VGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNI   80 (146)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCG
T ss_pred             CeEEEECcCH-HHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEecccc
Confidence            8999999977 69999999998883  788887542                        11246789999999888865


Q ss_pred             c
Q 024116          191 N  191 (272)
Q Consensus       191 ~  191 (272)
                      .
T Consensus        81 ~   81 (146)
T d1hyha1          81 K   81 (146)
T ss_dssp             G
T ss_pred             c
Confidence            3

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.68  E-value=0.0004  Score=55.72  Aligned_cols=93  Identities=15%  Similarity=-0.001  Sum_probs=63.1

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCH-h--
Q 024116          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNP-E--  174 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-------------------~~l-~--  174 (272)
                      +|+.......|.+..---+|.+|+|.|+++.||..++++....|++|+...++.                   ++. +  
T Consensus        11 g~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~   90 (182)
T d1v3va2          11 GMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEA   90 (182)
T ss_dssp             SHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHH
T ss_pred             hhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHH
Confidence            454455556665554334799999999999899999999999999988876542                   111 1  


Q ss_pred             -hh--cCCCcEEEEecCCCcc-ccCCCcCCCcEEEEeee
Q 024116          175 -QI--TSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGT  209 (272)
Q Consensus       175 -~~--l~~ADIVIsa~g~p~~-i~~~~vk~g~vviDig~  209 (272)
                       +.  -+..|+|+.++|.+.+ -.-+.++++-.++-+|.
T Consensus        91 ~~~~~~~Gvd~v~D~vG~~~~~~~~~~l~~~G~~v~~G~  129 (182)
T d1v3va2          91 LKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGA  129 (182)
T ss_dssp             HHHHCTTCEEEEEESSCHHHHHHHGGGEEEEEEEEECCC
T ss_pred             HHHhhcCCCceeEEecCchhhhhhhhhccCCCeEEeecc
Confidence             11  1347888888885433 23345677767777774

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=96.67  E-value=0.0013  Score=55.43  Aligned_cols=38  Identities=21%  Similarity=0.267  Sum_probs=34.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .|+||.++|.|+++-+|++++..|+++|++|.++.++.
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~   39 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP   39 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            48999999999988789999999999999999998763

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.67  E-value=0.00083  Score=57.31  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=33.7

Q ss_pred             CCCCccceEEEEcCC---cccHHHHHHHHHhCCCEEEEEeCC
Q 024116          131 GVEIMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g---~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .++|+||+++|.|+|   |+ |++++..|+++||+|.++.+.
T Consensus         3 ~~~L~gK~alVTGass~~GI-G~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           3 PIDLRGKRAFIAGIADDNGY-GWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CCCCTTCEEEEECCSSSSSH-HHHHHHHHHHTTCEEEEEEEH
T ss_pred             CcCCCCCEEEEECCCCCchH-HHHHHHHHHHCCCEEEEEeCc
Confidence            468999999999986   55 999999999999999988753

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.0011  Score=53.85  Aligned_cols=36  Identities=22%  Similarity=0.305  Sum_probs=33.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ..++|+|+|||+|-+ |..+|..|+++|.+|+++++.
T Consensus        40 ~~~~k~V~IIGaGPA-GL~AA~~la~~G~~Vtl~E~~   75 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPA-GLAFAINAAARGHQVTLFDAH   75 (179)
T ss_dssp             CSSCCEEEEECCSHH-HHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCCcEEEEECccHH-HHHHHHHHHhhccceEEEecc
Confidence            357899999999998 999999999999999999975

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=96.66  E-value=0.00017  Score=56.12  Aligned_cols=70  Identities=11%  Similarity=0.006  Sum_probs=45.2

Q ss_pred             EEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecCCCcc--ccCCCcCCCcE
Q 024116          140 VVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL--VRGSWLKPGAV  203 (272)
Q Consensus       140 ~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g~p~~--i~~~~vk~g~v  203 (272)
                      -+||.|.+ |++++..|.+.+..+.|++|+.              .++.+.++++|+||.+++-..+  +-.+.-+++.+
T Consensus         3 gfIG~G~m-g~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~~i~~v~~~l~~~~~i   81 (153)
T d2i76a2           3 NFVGTGTL-TRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRYIKTVANHLNLGDAV   81 (153)
T ss_dssp             EEESCCHH-HHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTTHHHHHTTTCCSSCC
T ss_pred             EEEeCcHH-HHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccchhhhHHHhhhccccee
Confidence            47999996 9999998866544446888763              3456788999999999974332  22333356889


Q ss_pred             EEEeeeC
Q 024116          204 VLDVGTC  210 (272)
Q Consensus       204 viDig~~  210 (272)
                      ++|+...
T Consensus        82 vi~~s~~   88 (153)
T d2i76a2          82 LVHCSGF   88 (153)
T ss_dssp             EEECCSS
T ss_pred             eeecccc
Confidence            9998754

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.64  E-value=0.00076  Score=54.89  Aligned_cols=33  Identities=30%  Similarity=0.401  Sum_probs=31.0

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ||||+|||+|-+ |-.+|..|++.|.+|+|+.+.
T Consensus         1 ~KkV~IIGaG~a-GL~aA~~La~~G~~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIGAGVS-GLAAAYKLKIHGLNVTVFEAE   33 (373)
T ss_dssp             CCEEEEECCSHH-HHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEECcCHH-HHHHHHHHHhCCCCEEEEeCC
Confidence            799999999998 999999999999999999865

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.64  E-value=0.001  Score=56.58  Aligned_cols=36  Identities=19%  Similarity=0.287  Sum_probs=33.8

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      |+||.++|.|++.=+|++++..|+++|++|.++.|+
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~   37 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVS   37 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            789999999998878999999999999999999876

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00034  Score=59.74  Aligned_cols=37  Identities=24%  Similarity=0.330  Sum_probs=34.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      |+||+++|.|+|.=+|+++|..|+++|++|.++.|+.
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            7999999999988889999999999999999999874

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.63  E-value=0.0018  Score=51.57  Aligned_cols=57  Identities=21%  Similarity=0.424  Sum_probs=45.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC------------------------CCHhhhcCCCcEEEEec
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT------------------------KNPEQITSEADIVIAAA  187 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t------------------------~~l~~~l~~ADIVIsa~  187 (272)
                      +..+||.|||+|. ||.+++..|..+|.  ++.+++.+.                        ..-++.+++|||||.+.
T Consensus        18 ~~~~KV~IIGaG~-VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA   96 (160)
T d1i0za1          18 VPNNKITVVGVGQ-VGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA   96 (160)
T ss_dssp             CCSSEEEEECCSH-HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred             CCCCeEEEECCCH-HHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence            5678999999977 69999999999984  788887541                        12257789999999888


Q ss_pred             CCCc
Q 024116          188 GVAN  191 (272)
Q Consensus       188 g~p~  191 (272)
                      |.|.
T Consensus        97 g~~~  100 (160)
T d1i0za1          97 GVRQ  100 (160)
T ss_dssp             SCCC
T ss_pred             CCcc
Confidence            8653

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=96.62  E-value=0.0012  Score=56.05  Aligned_cols=36  Identities=28%  Similarity=0.298  Sum_probs=33.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      |+||.++|.|++.-+|+++|..|+++|++|.++.|+
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~   37 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFG   37 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCS
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            689999999998888999999999999999999875

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.59  E-value=0.0017  Score=50.65  Aligned_cols=54  Identities=20%  Similarity=0.334  Sum_probs=42.4

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC------------------------CCHhhhcCCCcEEEEecCCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT------------------------KNPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t------------------------~~l~~~l~~ADIVIsa~g~p  190 (272)
                      .|+.|||+|. ||..++..|..++.  ++.+++.+.                        .+-.+.+++||+||.+.|.|
T Consensus         2 ~Ki~IIGaG~-VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~~   80 (143)
T d1llda1           2 TKLAVIGAGA-VGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPR   80 (143)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECCCH-HHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEecccc
Confidence            4799999976 69999999998884  788887541                        12246789999999999975


Q ss_pred             c
Q 024116          191 N  191 (272)
Q Consensus       191 ~  191 (272)
                      .
T Consensus        81 ~   81 (143)
T d1llda1          81 Q   81 (143)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.57  E-value=0.0007  Score=53.98  Aligned_cols=96  Identities=17%  Similarity=0.166  Sum_probs=63.5

Q ss_pred             cccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCC-------------------CCCHh
Q 024116          115 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHAL-------------------TKNPE  174 (272)
Q Consensus       115 ~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~-V~v~~~~-------------------t~~l~  174 (272)
                      .++|.....+..+.+..---.|.+|+|+|+|+ +|..+++++...|+. |+++.++                   .++..
T Consensus         8 pl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~-iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~   86 (174)
T d1f8fa2           8 PLGCGIQTGAGACINALKVTPASSFVTWGAGA-VGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPV   86 (174)
T ss_dssp             GGGTHHHHHHHHHHTTTCCCTTCEEEEESCSH-HHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHH
T ss_pred             HHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCH-HHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHH
Confidence            35775555555544443345799999999977 599999999999985 5555443                   12333


Q ss_pred             hhcC-----CCcEEEEecCCCcccc--CCCcCCCcEEEEeeeCC
Q 024116          175 QITS-----EADIVIAAAGVANLVR--GSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       175 ~~l~-----~ADIVIsa~g~p~~i~--~~~vk~g~vviDig~~~  211 (272)
                      +.++     .+|+||.++|.+..++  -+.++++-.++=+|...
T Consensus        87 ~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~  130 (174)
T d1f8fa2          87 AAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQ  130 (174)
T ss_dssp             HHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCS
T ss_pred             HHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEeecC
Confidence            3332     2799999999876542  35678876666677543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.56  E-value=0.00089  Score=56.79  Aligned_cols=37  Identities=32%  Similarity=0.346  Sum_probs=34.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .|+||.++|.|++.-+|++++..|+++|++|.++.++
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~   39 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDIN   39 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3799999999988878999999999999999999876

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.55  E-value=0.00054  Score=58.83  Aligned_cols=38  Identities=13%  Similarity=0.220  Sum_probs=34.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .|+||.++|-|++.-+|++++..|+++|++|.++.|+.
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA   39 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47999999999988789999999999999999999873

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=96.53  E-value=0.0012  Score=55.92  Aligned_cols=38  Identities=18%  Similarity=0.260  Sum_probs=34.0

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+|+||.|+|.|++.-+|+.+|..|+++|++|.++.|+
T Consensus         1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~   38 (254)
T d1sbya1           1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDR   38 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEES
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            37899999999998778999999999999998888654

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.00042  Score=59.01  Aligned_cols=38  Identities=18%  Similarity=0.292  Sum_probs=35.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ..|+||.++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   44 (255)
T d1fmca_           7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN   44 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            46899999999998888999999999999999999876

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.49  E-value=0.0011  Score=56.00  Aligned_cols=36  Identities=25%  Similarity=0.285  Sum_probs=33.8

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      |+||.++|.|++.=+|++++..|+++|++|.++.|+
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   39 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRH   39 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            899999999988878999999999999999999876

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0014  Score=57.31  Aligned_cols=91  Identities=13%  Similarity=0.199  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHh----CCC-------EEEEEeCCC------------------
Q 024116          120 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR----HHA-------TVSIVHALT------------------  170 (272)
Q Consensus       120 a~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~----~ga-------~V~v~~~~t------------------  170 (272)
                      -.|++..|+-.+.+++.-++++.|+|.+ |-.++.+|..    .|.       .+++++++-                  
T Consensus         9 lAglinAlki~gk~l~d~kiv~~GAGsA-g~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a   87 (294)
T d1pj3a1           9 LAGLLAAQKVISKPISEHKILFLGAGEA-ALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFT   87 (294)
T ss_dssp             HHHHHHHHHHHCCCGGGCCEEEECCSHH-HHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGC
T ss_pred             HHHHHHHHHHhCCCHHHcEEEEECccHH-HHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhh
Confidence            3678889999999999999999999987 8888887643    332       489998640                  


Q ss_pred             --------CCHhhhcC--CCcEEEEecCCCccccCCCcC------CCcEEEEeeeCCC
Q 024116          171 --------KNPEQITS--EADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  212 (272)
Q Consensus       171 --------~~l~~~l~--~ADIVIsa~g~p~~i~~~~vk------~g~vviDig~~~~  212 (272)
                              .+|.+.++  +.|++|-..|.++.+++++++      +.-+|+=+. ||.
T Consensus        88 ~~~~~~~~~~L~e~i~~~kptvliG~S~~~g~ft~evi~~Ma~~~~~PIIFaLS-NPt  144 (294)
T d1pj3a1          88 HSAPESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALS-NPT  144 (294)
T ss_dssp             BCCCSSCCSSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             ccccccchhHHHHHHHhcCCceEEEecCCCCcCCHHHHHHHHhcCCCcEEEEcc-CCC
Confidence                    24556554  789999999999999999885      677888887 654

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.48  E-value=0.0017  Score=50.36  Aligned_cols=53  Identities=23%  Similarity=0.290  Sum_probs=41.8

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC--CEEEEEeCCC-----------------------CCHhhhcCCCcEEEEecCCCc
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALT-----------------------KNPEQITSEADIVIAAAGVAN  191 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~g--a~V~v~~~~t-----------------------~~l~~~l~~ADIVIsa~g~p~  191 (272)
                      |+.|||+|. ||.+++..|+.++  .++.+++.+.                       .+..+.+++||+||.+.|.|.
T Consensus         2 KI~IIGaG~-VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~   79 (140)
T d1a5za1           2 KIGIVGLGR-VGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQ   79 (140)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCC
T ss_pred             EEEEECcCH-HHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEeccccc
Confidence            799999977 6999999888887  3788887541                       123567999999999998654

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.47  E-value=0.00088  Score=56.72  Aligned_cols=38  Identities=24%  Similarity=0.265  Sum_probs=34.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+|+||.++|.|+++-+|++++..|+++|++|+++.++
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~   39 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS   39 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence            36899999999998888999999999999999987654

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.47  E-value=0.00051  Score=58.36  Aligned_cols=37  Identities=24%  Similarity=0.297  Sum_probs=34.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .|+||+++|.|++.-+|++++..|+++|++|.++.|+
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADIN   38 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3799999999998888999999999999999999986

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.00067  Score=57.41  Aligned_cols=39  Identities=10%  Similarity=0.187  Sum_probs=35.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      -+|.||.++|-|+|.-+|+.++..|+++|++|.++.|+.
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            368999999999998889999999999999999999874

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.46  E-value=0.0019  Score=54.42  Aligned_cols=36  Identities=14%  Similarity=0.226  Sum_probs=32.5

Q ss_pred             CccceEEEEcCC---cccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g---~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      |+||+++|.|++   | +|+++|..|+++|++|+++.|+.
T Consensus         3 L~gK~alITGaag~~G-IG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKS-IAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             TTTCEEEEECCCSTTS-HHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCCcH-HHHHHHHHHHHCCCEEEEEeCCH
Confidence            799999999964   4 49999999999999999999874

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.45  E-value=0.0024  Score=49.64  Aligned_cols=53  Identities=13%  Similarity=0.357  Sum_probs=40.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCCC-----------------------CHhhhcCCCcEEEEecCCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALTK-----------------------NPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t~-----------------------~l~~~l~~ADIVIsa~g~p  190 (272)
                      +||.|||+|. ||..++..|+.++.  ++.+++....                       .-++.+++||+||.+.|.|
T Consensus         2 ~KI~IIGaG~-VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~   79 (142)
T d1y6ja1           2 SKVAIIGAGF-VGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGAN   79 (142)
T ss_dssp             CCEEEECCSH-HHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC-
T ss_pred             CeEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccc
Confidence            5899999966 69999999999884  7888875421                       1256788899999888854

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.44  E-value=0.00067  Score=57.84  Aligned_cols=37  Identities=27%  Similarity=0.320  Sum_probs=34.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .|+||.++|.|++.=+|++++..|+++|++|.++.++
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~   39 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIA   39 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4899999999988888999999999999999999876

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.43  E-value=0.00069  Score=57.33  Aligned_cols=38  Identities=24%  Similarity=0.239  Sum_probs=34.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .|+||.++|-|+++-+|++++..|+++|++|.++.|+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~   40 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD   40 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47999999999988789999999999999999998863

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.41  E-value=0.0013  Score=52.15  Aligned_cols=95  Identities=14%  Similarity=0.149  Sum_probs=64.9

Q ss_pred             cccCCHHHHHHHHHHhCCCC-ccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC------------------CC-H
Q 024116          115 FIPCTPKGCIELLIRSGVEI-MGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT------------------KN-P  173 (272)
Q Consensus       115 ~~p~Ta~g~~~~l~~~~~~l-~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t------------------~~-l  173 (272)
                      -+||.....++.|++.+..+ .|.+|+|+|+|+ +|..+++++...|+ .|+++.++.                  ++ .
T Consensus        11 ~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~-vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~   89 (172)
T d1h2ba2          11 PLADAGITAYRAVKKAARTLYPGAYVAIVGVGG-LGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPV   89 (172)
T ss_dssp             GGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSH-HHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHH
T ss_pred             HHHhHHHHHHHHHHHhhhccCCCCEEEEeCCCh-HHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHH
Confidence            35776666777777766544 689999999987 49999998888886 667776542                  11 1


Q ss_pred             hhhc-----CCCcEEEEecCCCccc--cCCCcCCCcEEEEeeeC
Q 024116          174 EQIT-----SEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       174 ~~~l-----~~ADIVIsa~g~p~~i--~~~~vk~g~vviDig~~  210 (272)
                      ++.+     ...|+||.++|.+..+  .-+.++++-.++=+|..
T Consensus        90 ~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~  133 (172)
T d1h2ba2          90 KQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYG  133 (172)
T ss_dssp             HHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCS
T ss_pred             HHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCc
Confidence            1111     2379999999977643  34567777666667753

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00069  Score=57.57  Aligned_cols=38  Identities=18%  Similarity=0.109  Sum_probs=35.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .|+||.++|.|+|.-+|+++|..|+++|++|.++.|+.
T Consensus         7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_           7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            38999999999998899999999999999999998763

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.39  E-value=0.00069  Score=57.95  Aligned_cols=38  Identities=26%  Similarity=0.415  Sum_probs=34.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .|+||.++|.|++.-+|++++..|+++|++|.++.|+.
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~   39 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSS   39 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            37999999999988889999999999999999998763

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.36  E-value=0.00076  Score=57.10  Aligned_cols=40  Identities=18%  Similarity=0.092  Sum_probs=36.0

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      -+.|+||.++|.|+++-+|++++..|+++|++|.++.|+.
T Consensus         5 ~f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~   44 (251)
T d2c07a1           5 YYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   44 (251)
T ss_dssp             CCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3678999999999987789999999999999999999863

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.36  E-value=0.0011  Score=51.60  Aligned_cols=70  Identities=19%  Similarity=0.170  Sum_probs=49.1

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCCCCH--------------hhhcCCCcEEEEecCCCcc---ccCCCcC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTKNP--------------EQITSEADIVIAAAGVANL---VRGSWLK  199 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t~~l--------------~~~l~~ADIVIsa~g~p~~---i~~~~vk  199 (272)
                      |+.+||.|.+ |.+++..|.+.| .+|++++|+.+.+              .+.++++|+||-++. |..   +-.+...
T Consensus         2 kI~fIG~G~M-G~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~v~~~Div~lavk-P~~~~~v~~~l~~   79 (152)
T d1yqga2           2 NVYFLGGGNM-AAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVLILAVK-PQDMEAACKNIRT   79 (152)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCCTTSEEEECSC-HHHHHHHHTTCCC
T ss_pred             EEEEEcCcHH-HHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccccccccccccceEEEecC-HHHHHHhHHHHhh
Confidence            6899999886 999999888777 7999999874111              244678999999986 432   1122233


Q ss_pred             CCcEEEEeee
Q 024116          200 PGAVVLDVGT  209 (272)
Q Consensus       200 ~g~vviDig~  209 (272)
                      .+.+++.+..
T Consensus        80 ~~~~viS~~a   89 (152)
T d1yqga2          80 NGALVLSVAA   89 (152)
T ss_dssp             TTCEEEECCT
T ss_pred             cccEEeeccc
Confidence            4677777653

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.35  E-value=0.0058  Score=45.85  Aligned_cols=38  Identities=26%  Similarity=0.408  Sum_probs=33.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+-++|+++|||+|-+ |.-+|..|.++|.+|+++++..
T Consensus        26 ~~~~~k~vvViGgG~i-G~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          26 VDPEVNNVVVIGSGYI-GIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TCTTCCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSS
T ss_pred             hccCCCEEEEECChHH-HHHHHHHhhccceEEEEEEecC
Confidence            3457899999999885 9999999999999999998864

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.35  E-value=0.00089  Score=54.03  Aligned_cols=93  Identities=14%  Similarity=0.050  Sum_probs=56.7

Q ss_pred             cCCHHHHHHHHHHhCCCCc--cceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCC--------------------CCCH
Q 024116          117 PCTPKGCIELLIRSGVEIM--GKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHAL--------------------TKNP  173 (272)
Q Consensus       117 p~Ta~g~~~~l~~~~~~l~--gk~v~ViG~g~~vG~~la~~L~~~ga~-V~v~~~~--------------------t~~l  173 (272)
                      |.+...+...|.+..---.  ++.|+|-|+++.||..+++++...|++ |+.+.+.                    ++++
T Consensus        10 g~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~   89 (187)
T d1vj1a2          10 GMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNV   89 (187)
T ss_dssp             SHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCH
T ss_pred             hcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhH
Confidence            4444555666655533223  478999998666899999999999985 4434332                    2333


Q ss_pred             hhhcCC-----CcEEEEecCCCcc-ccCCCcCCCcEEEEeee
Q 024116          174 EQITSE-----ADIVIAAAGVANL-VRGSWLKPGAVVLDVGT  209 (272)
Q Consensus       174 ~~~l~~-----ADIVIsa~g~p~~-i~~~~vk~g~vviDig~  209 (272)
                      .+.+++     +|+|+.++|.+.+ -..+.++++-.++-+|.
T Consensus        90 ~~~~~~~~~~GvDvv~D~vGg~~~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2          90 AEQLREACPGGVDVYFDNVGGDISNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             HHHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEEC--
T ss_pred             HHHHHHHhccCceEEEecCCchhHHHHhhhccccccEEEecc
Confidence            333333     7888888875443 23455677666666664

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=96.35  E-value=0.0022  Score=51.60  Aligned_cols=52  Identities=29%  Similarity=0.274  Sum_probs=42.9

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       119 Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ||+-.+..|++.+...++.+++|.|+++-||..+++++...|++|+.+.++.
T Consensus        15 TA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~   66 (177)
T d1o89a2          15 TAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRE   66 (177)
T ss_dssp             HHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             HHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecch
Confidence            5555556677778777888999999988899999999999999988877654

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.0028  Score=44.40  Aligned_cols=54  Identities=28%  Similarity=0.268  Sum_probs=41.8

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC
Q 024116          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN  172 (272)
Q Consensus       119 Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~  172 (272)
                      |++-++..+.+.+..-+|.+++|.|+++.||..+.+++...|++|+.+.++.++
T Consensus        15 TA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k   68 (77)
T d1o8ca2          15 TAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST   68 (77)
T ss_dssp             HHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred             HHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHH
Confidence            344344445566666689999999999989999999999999999887665543

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=96.33  E-value=0.0013  Score=55.26  Aligned_cols=36  Identities=19%  Similarity=0.197  Sum_probs=31.6

Q ss_pred             CccceEEEEcCC---cccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g---~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      |+||+++|.|++   |+ |+++|+.|+++||+|.++.++.
T Consensus         4 l~gK~~lItGaag~~GI-G~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSI-AFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTTCEEEECCCSSTTCH-HHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCEEEEECCCCCCHH-HHHHHHHHHHcCCEEEEEeCCh
Confidence            799999999952   44 9999999999999999998764

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.0014  Score=51.42  Aligned_cols=76  Identities=13%  Similarity=0.133  Sum_probs=51.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC----CEEEEEeCCCC---------------CH--hhhcCCCcEEEEecCCCc--cc
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHH----ATVSIVHALTK---------------NP--EQITSEADIVIAAAGVAN--LV  193 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~g----a~V~v~~~~t~---------------~l--~~~l~~ADIVIsa~g~p~--~i  193 (272)
                      |||.|||++|.||+-+...|+++.    .+++.+.+...               ++  .+..++.|++|++++...  .+
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s~~~   81 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNEI   81 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHHHHH
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHHHHh
Confidence            589999999999999997665442    46666654320               11  235678999999997432  23


Q ss_pred             cCCCcCCC--cEEEEeeeCCC
Q 024116          194 RGSWLKPG--AVVLDVGTCPV  212 (272)
Q Consensus       194 ~~~~vk~g--~vviDig~~~~  212 (272)
                      -+...+.|  .+|||.+..+.
T Consensus        82 ~~~~~~~g~~~~VID~Ss~fR  102 (146)
T d1t4ba1          82 YPKLRESGWQGYWIDAASSLR  102 (146)
T ss_dssp             HHHHHHTTCCCEEEECSSTTT
T ss_pred             hHHHHhcCCCeecccCCcccc
Confidence            34445555  58999987754

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.30  E-value=0.00071  Score=57.58  Aligned_cols=37  Identities=32%  Similarity=0.424  Sum_probs=34.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .|+||.++|.|++.-+|++++..|+++|++|.++.|+
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRH   38 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3799999999998888999999999999999999886

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.00091  Score=58.17  Aligned_cols=37  Identities=22%  Similarity=0.214  Sum_probs=34.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      |+||.++|.|++.-+|++++..|+++|++|.++.|+.
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~   46 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL   46 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            8999999999988889999999999999999998863

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=96.29  E-value=0.0043  Score=53.80  Aligned_cols=55  Identities=20%  Similarity=0.109  Sum_probs=44.7

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-----------------------------CCHhhhcCCCcEEEE
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------------------------KNPEQITSEADIVIA  185 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t-----------------------------~~l~~~l~~ADIVIs  185 (272)
                      +||+|+|.|++|.+|..++..|+++|.+|..+-|+.                             ..+.+.++.+|.|+.
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~   89 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAH   89 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEE
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhh
Confidence            699999999999999999999999999998876531                             133467888999886


Q ss_pred             ecCC
Q 024116          186 AAGV  189 (272)
Q Consensus       186 a~g~  189 (272)
                      ..+.
T Consensus        90 ~a~~   93 (342)
T d1y1pa1          90 IASV   93 (342)
T ss_dssp             CCCC
T ss_pred             hccc
Confidence            5553

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=96.25  E-value=0.0021  Score=55.55  Aligned_cols=37  Identities=32%  Similarity=0.223  Sum_probs=34.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++||||+|.|++|.+|..++..|+++|.+|..+.|..
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            4899999999999999999999999999999998764

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0012  Score=55.73  Aligned_cols=36  Identities=28%  Similarity=0.260  Sum_probs=33.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++||.++|.|++.=+|++++..|+++|++|.++.|+
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~   36 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWN   36 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            479999999998878999999999999999999876

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.22  E-value=0.0031  Score=50.13  Aligned_cols=57  Identities=19%  Similarity=0.320  Sum_probs=44.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC------------------------CCHhhhcCCCcEEEEec
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT------------------------KNPEQITSEADIVIAAA  187 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t------------------------~~l~~~l~~ADIVIsa~  187 (272)
                      ++..||.|||+|. ||..+|..|..+|.  ++.+++.+.                        .+-.+.+++||+||.+.
T Consensus        17 ~~~~KI~IIGaG~-VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvita   95 (159)
T d2ldxa1          17 LSRCKITVVGVGD-VGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITA   95 (159)
T ss_dssp             CCCCEEEEECCSH-HHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECC
T ss_pred             CCCCeEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEec
Confidence            4566899999977 69999999999983  788887542                        12257789999999999


Q ss_pred             CCCc
Q 024116          188 GVAN  191 (272)
Q Consensus       188 g~p~  191 (272)
                      |.|.
T Consensus        96 g~~~   99 (159)
T d2ldxa1          96 GARM   99 (159)
T ss_dssp             SCCC
T ss_pred             cccc
Confidence            8654

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.22  E-value=0.0028  Score=55.15  Aligned_cols=38  Identities=18%  Similarity=0.207  Sum_probs=34.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ..|+||.++|-|+|.=+|+++|..|+++|++|.++.+.
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~   40 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLG   40 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            46899999999999889999999999999999998653

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.16  E-value=0.00094  Score=57.20  Aligned_cols=36  Identities=25%  Similarity=0.445  Sum_probs=33.8

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      |+||+++|-|++.=+|++++..|+++|++|.++.|+
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   37 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRN   37 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            789999999998888999999999999999999876

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.0049  Score=48.07  Aligned_cols=54  Identities=24%  Similarity=0.403  Sum_probs=39.6

Q ss_pred             eEEEEcCCcccHHHHHHHHH-hCC--CEEEEEeCCC-----------------------CCHhhhcCCCcEEEEecCCCc
Q 024116          138 NAVVIGRSNIVGLPTSLLLQ-RHH--ATVSIVHALT-----------------------KNPEQITSEADIVIAAAGVAN  191 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~-~~g--a~V~v~~~~t-----------------------~~l~~~l~~ADIVIsa~g~p~  191 (272)
                      ||.|||++|.||..++.+|. +.+  .++.+.+...                       .+..+.+++||+||.+.|.|.
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~~   81 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVRR   81 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCCC
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCccC
Confidence            79999965557999998875 434  4788776431                       223567899999999999653

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.11  E-value=0.0018  Score=52.43  Aligned_cols=32  Identities=16%  Similarity=0.148  Sum_probs=29.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      |+|.|||+|-+ |+.+|.+++..|.+|++++++
T Consensus         5 ~~vaViGaG~m-G~~iA~~~a~~G~~V~l~D~~   36 (186)
T d1wdka3           5 KQAAVLGAGIM-GGGIAYQSASKGTPILMKDIN   36 (186)
T ss_dssp             SSEEEECCHHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEEECcCHH-HHHHHHHHHhCCCeEEEEECC
Confidence            68999999775 999999999999999999865

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.10  E-value=0.0033  Score=48.87  Aligned_cols=53  Identities=15%  Similarity=0.280  Sum_probs=41.3

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC-------------------------CCHhhhcCCCcEEEEecCCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-------------------------KNPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t-------------------------~~l~~~l~~ADIVIsa~g~p  190 (272)
                      |+.|||+|. ||.+++..|+.++.  ++.+++.+.                         .+-.+.+++||+||.+.|.|
T Consensus         2 KI~IIGaG~-VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvitag~~   80 (142)
T d1ojua1           2 KLGFVGAGR-VGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA   80 (142)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             EEEEECcCH-HHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEecccc
Confidence            799999977 69999999998873  788886441                         11257899999999998865


Q ss_pred             c
Q 024116          191 N  191 (272)
Q Consensus       191 ~  191 (272)
                      .
T Consensus        81 ~   81 (142)
T d1ojua1          81 R   81 (142)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.08  E-value=0.0013  Score=51.26  Aligned_cols=76  Identities=17%  Similarity=0.146  Sum_probs=54.4

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC---CEEEEEeCCC---------------CC-HhhhcCCCcEEEEecCCCc--cccC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHH---ATVSIVHALT---------------KN-PEQITSEADIVIAAAGVAN--LVRG  195 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~g---a~V~v~~~~t---------------~~-l~~~l~~ADIVIsa~g~p~--~i~~  195 (272)
                      -+|.|||++|.+|+-+.++|.+++   .++..+.+++               .+ ..+...++|+++.+++...  .+.+
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s~~~~~   82 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRAHAE   82 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcchhhhhcc
Confidence            479999999999999999997654   4666554432               01 1245678999999987422  2344


Q ss_pred             CCcCCCcEEEEeeeCCC
Q 024116          196 SWLKPGAVVLDVGTCPV  212 (272)
Q Consensus       196 ~~vk~g~vviDig~~~~  212 (272)
                      ...+.|..|||.+..+.
T Consensus        83 ~~~~~g~~VID~Ss~fR   99 (144)
T d2hjsa1          83 RARAAGCSVIDLSGALE   99 (144)
T ss_dssp             HHHHTTCEEEETTCTTT
T ss_pred             ccccCCceEEeechhhc
Confidence            55678999999987764

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.07  E-value=0.0036  Score=51.87  Aligned_cols=54  Identities=13%  Similarity=0.190  Sum_probs=43.7

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC------HhhhcC--CCcEEEEecCCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN------PEQITS--EADIVIAAAGVA  190 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~------l~~~l~--~ADIVIsa~g~p  190 (272)
                      .||+|.|++|.+|+.++..|.++|.+|+.++|..-+      +++.++  +.|+||.+.+..
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~~d~~~~~~~l~~~~~d~vih~a~~~   63 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAHT   63 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccCCCHHHHHHHHHHcCCCEEEeecccc
Confidence            369999999999999999999999999999887533      244554  569999887743

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.05  E-value=0.0022  Score=50.53  Aligned_cols=34  Identities=12%  Similarity=0.231  Sum_probs=30.9

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~  169 (272)
                      .+|||+|||+|-+ |..+|..|+++|+ .|+++++.
T Consensus         3 ~~~kVaIIGaGpa-Gl~aA~~l~~~G~~~V~v~E~~   37 (196)
T d1gtea4           3 YSAKIALLGAGPA-SISCASFLARLGYSDITIFEKQ   37 (196)
T ss_dssp             GGCCEEEECCSHH-HHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCCEEEEECChHH-HHHHHHHHHHCCCCeEEEEEec
Confidence            4799999999887 9999999999998 59999876

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.004  Score=51.85  Aligned_cols=37  Identities=16%  Similarity=0.257  Sum_probs=32.4

Q ss_pred             CccceEEEEcCCc--ccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSN--IVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~--~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      |+||+++|.|+++  =+|+++|..|+++|++|.++.++.
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~   41 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   41 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence            7999999999864  148999999999999999998874

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0058  Score=52.37  Aligned_cols=32  Identities=22%  Similarity=0.282  Sum_probs=30.0

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      |||+|.|++|.+|+.++..|+++|.+|+.+.+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            89999999999999999999999999998864

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.00  E-value=0.0044  Score=53.85  Aligned_cols=55  Identities=15%  Similarity=0.071  Sum_probs=44.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------CCHhhhcCCCcEEEEecC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------KNPEQITSEADIVIAAAG  188 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t---------------------~~l~~~l~~ADIVIsa~g  188 (272)
                      -++.||+|.|++|.+|+.++..|.++|.+|+++++..                     .++.+.++..|.||...+
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~   88 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA   88 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeeccc
Confidence            4789999999999999999999999999999996532                     122345678999996665

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.95  E-value=0.004  Score=47.03  Aligned_cols=52  Identities=17%  Similarity=0.262  Sum_probs=40.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------------------CHh-hhcCCCcEEEEecCCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------------NPE-QITSEADIVIAAAGVA  190 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~----------------------~l~-~~l~~ADIVIsa~g~p  190 (272)
                      +|+|+|.|.. |+.++..|.++|..|++.+.+.+                      -|+ ..+++||.++.+++..
T Consensus         2 ~IvI~G~G~~-G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d   76 (132)
T d1lssa_           2 YIIIAGIGRV-GYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE   76 (132)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH
T ss_pred             EEEEECCCHH-HHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcH
Confidence            7999999885 99999999999999999986531                      111 2367888888887754

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=95.92  E-value=0.0055  Score=51.78  Aligned_cols=50  Identities=28%  Similarity=0.212  Sum_probs=40.3

Q ss_pred             cCCHHHHHH----HHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEe
Q 024116          117 PCTPKGCIE----LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVH  167 (272)
Q Consensus       117 p~Ta~g~~~----~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~  167 (272)
                      .+|++|+..    .+++.+.+++||+|+|=|.|. ||..++++|.+.|++|+.+.
T Consensus         8 ~ATg~Gv~~~~~~~~~~~~~~l~g~~v~IqGfGn-VG~~~a~~L~~~Gakvv~vs   61 (242)
T d1v9la1           8 YATGFGVAVATREMAKKLWGGIEGKTVAIQGMGN-VGRWTAYWLEKMGAKVIAVS   61 (242)
T ss_dssp             GHHHHHHHHHHHHHHHHHHSCCTTCEEEEECCSH-HHHHHHHHHHTTTCEEEEEE
T ss_pred             chhhHHHHHHHHHHHHHcCCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEee
Confidence            356777554    455677899999999999988 59999999999999876443

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.91  E-value=0.0035  Score=50.74  Aligned_cols=34  Identities=35%  Similarity=0.495  Sum_probs=30.5

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .-|||+|||+|-+ |-.+|..|+++|.+|+|+.+.
T Consensus         5 ~~~kVvVIGaGia-Gl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           5 SQKRVVVLGSGVI-GLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CSCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCcEEEECccHH-HHHHHHHHHHCCCCEEEEeCC
Confidence            3478999999886 999999999999999999864

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.88  E-value=0.0023  Score=49.60  Aligned_cols=33  Identities=15%  Similarity=0.218  Sum_probs=28.8

Q ss_pred             eEEEE-cCCcccHHHHHHHHHhCCCEEEEEeCCCC
Q 024116          138 NAVVI-GRSNIVGLPTSLLLQRHHATVSIVHALTK  171 (272)
Q Consensus       138 ~v~Vi-G~g~~vG~~la~~L~~~ga~V~v~~~~t~  171 (272)
                      ||.|+ |+|+ +|+++|..|++.|++|++..|+.+
T Consensus         2 ki~vigGaG~-iG~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           2 RVALLGGTGN-LGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             EEEEETTTSH-HHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             EEEEEeCCcH-HHHHHHHHHHHCCCEEEEEECCHH
Confidence            68899 6676 599999999999999999999853

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.85  E-value=0.0097  Score=47.34  Aligned_cols=95  Identities=17%  Similarity=0.177  Sum_probs=61.0

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC---------------------CH
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK---------------------NP  173 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t~---------------------~l  173 (272)
                      ++|--...+..+.+..---.|.+|+|+|.|++ |...++.+...|+ .|+++.+...                     ..
T Consensus         9 l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~i-Gl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~   87 (174)
T d1e3ia2           9 IGCGFSSGYGAAINTAKVTPGSTCAVFGLGCV-GLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPV   87 (174)
T ss_dssp             GGTHHHHHHHHHHTTSCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCH
T ss_pred             hhhHHHHHHHHHHHhhCCCCCCEEEEECCChH-HHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhh
Confidence            45633333433333333357999999999885 9999999999998 6777765421                     11


Q ss_pred             hhhc-----CCCcEEEEecCCCcccc--CCCcCCC-cEEEEeeeCC
Q 024116          174 EQIT-----SEADIVIAAAGVANLVR--GSWLKPG-AVVLDVGTCP  211 (272)
Q Consensus       174 ~~~l-----~~ADIVIsa~g~p~~i~--~~~vk~g-~vviDig~~~  211 (272)
                      +...     .-+|+||.++|.+..+.  -++++++ -.++=+|...
T Consensus        88 ~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~  133 (174)
T d1e3ia2          88 QDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKV  133 (174)
T ss_dssp             HHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSS
T ss_pred             hhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCC
Confidence            1111     44799999999987653  2567764 3445577653

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.82  E-value=0.012  Score=46.38  Aligned_cols=55  Identities=20%  Similarity=0.284  Sum_probs=47.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC-------------------------CCCHhhhcCCCcEEEEec
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-------------------------TKNPEQITSEADIVIAAA  187 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~-------------------------t~~l~~~l~~ADIVIsa~  187 (272)
                      +|+|++|++||-+..|.+.++..|...|+++++|.-.                         +.++.+.++.||+|.+..
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~   80 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV   80 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence            4799999999999999999999999999999999643                         246678999999998654

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.82  E-value=0.013  Score=44.60  Aligned_cols=77  Identities=12%  Similarity=0.137  Sum_probs=57.4

Q ss_pred             CCCccceEEEEcCC---------cccHHHHHHHHHhCCCEEEEEeCC-------------------------CCCHhhhc
Q 024116          132 VEIMGKNAVVIGRS---------NIVGLPTSLLLQRHHATVSIVHAL-------------------------TKNPEQIT  177 (272)
Q Consensus       132 ~~l~gk~v~ViG~g---------~~vG~~la~~L~~~ga~V~v~~~~-------------------------t~~l~~~l  177 (272)
                      ..+.+|+|.|+|-+         ++-...++..|..+|++|.+.+-.                         ..++.+.+
T Consensus         9 ~~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i   88 (136)
T d1mv8a3           9 TSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVV   88 (136)
T ss_dssp             TTSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHH
T ss_pred             HhcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhh
Confidence            45689999999932         223778999999999999998621                         14677889


Q ss_pred             CCCcEEEEecCCCcccc-CCCcCCCcEEEEee
Q 024116          178 SEADIVIAAAGVANLVR-GSWLKPGAVVLDVG  208 (272)
Q Consensus       178 ~~ADIVIsa~g~p~~i~-~~~vk~g~vviDig  208 (272)
                      ++||+||.++..+.+.+ ...++++.+|+|+-
T Consensus        89 ~~~D~ivi~t~h~~f~~l~~~~~~~~~I~D~~  120 (136)
T d1mv8a3          89 ASSDVLVLGNGDELFVDLVNKTPSGKKLVDLV  120 (136)
T ss_dssp             HHCSEEEECSCCGGGHHHHHSCCTTCEEEESS
T ss_pred             hhceEEEEEeCCHHHHHHHHHhcCCCEEEECC
Confidence            99999999999887622 12345567899964

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.81  E-value=0.0053  Score=51.22  Aligned_cols=34  Identities=6%  Similarity=0.070  Sum_probs=30.8

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      -+||+|+|++|.+|+.++..|.++|.+|+++.|.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~   36 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRP   36 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            3679999999999999999999999999998875

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=95.78  E-value=0.0042  Score=48.73  Aligned_cols=75  Identities=13%  Similarity=0.101  Sum_probs=50.4

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC----CEEEEEeCCC----------C-------CHhhhcCCCcEEEEecCCCc--ccc
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHH----ATVSIVHALT----------K-------NPEQITSEADIVIAAAGVAN--LVR  194 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~g----a~V~v~~~~t----------~-------~l~~~l~~ADIVIsa~g~p~--~i~  194 (272)
                      ||.|||++|.+|+-+.++|.++.    .++..+.++.          +       .-.+..+++|+||.|++...  -+-
T Consensus         2 KVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~s~~~~   81 (147)
T d1mb4a1           2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYTEKVY   81 (147)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHHHHHH
T ss_pred             EEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchHHHHHh
Confidence            69999999999999998776532    4665554332          0       11245789999999997421  233


Q ss_pred             CCCcCCC--cEEEEeeeCCC
Q 024116          195 GSWLKPG--AVVLDVGTCPV  212 (272)
Q Consensus       195 ~~~vk~g--~vviDig~~~~  212 (272)
                      +..++.|  .+|||.+..+.
T Consensus        82 ~~l~~~g~~~~VIDlSsdfR  101 (147)
T d1mb4a1          82 PALRQAGWKGYWIDAASTLR  101 (147)
T ss_dssp             HHHHHTTCCSEEEESSSTTT
T ss_pred             HHHHHcCCceEEEeCCcccc
Confidence            3344445  57999987764

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.77  E-value=0.0064  Score=51.12  Aligned_cols=35  Identities=20%  Similarity=0.171  Sum_probs=31.8

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .||-++|-|++.=+|++++..|+++|++|.++.|+
T Consensus         1 DgKValITGas~GIG~aia~~la~~Ga~V~i~~r~   35 (257)
T d2rhca1           1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARG   35 (257)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            47888999988878999999999999999999876

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.77  E-value=0.012  Score=49.23  Aligned_cols=88  Identities=20%  Similarity=0.281  Sum_probs=67.7

Q ss_pred             HHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC----------------------------CC
Q 024116          121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL----------------------------TK  171 (272)
Q Consensus       121 ~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~----------------------------t~  171 (272)
                      .|++..++-.+.+++..+++++|+|.+ |-.++.+|.+.+. ++++++|+                            ..
T Consensus        11 Agll~a~~~~g~~l~d~riv~~GAGsA-g~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~   89 (222)
T d1vl6a1          11 AAFLNALKLTEKKIEEVKVVVNGIGAA-GYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSG   89 (222)
T ss_dssp             HHHHHHHHHHTCCTTTCEEEEECCSHH-HHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCS
T ss_pred             HHHHHHHHHhCCChhhcEEEEEChHHH-HHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhhc
Confidence            578888999999999999999999997 9999999999885 79999875                            13


Q ss_pred             CHhhhcCCCcEEEEecCCCccccCCCcC---CCcEEEEeeeCC
Q 024116          172 NPEQITSEADIVIAAAGVANLVRGSWLK---PGAVVLDVGTCP  211 (272)
Q Consensus       172 ~l~~~l~~ADIVIsa~g~p~~i~~~~vk---~g~vviDig~~~  211 (272)
                      ++.+.++.+|+++... .++.+++|+++   +.-+|+=+. ||
T Consensus        90 ~l~~~l~g~~~~~g~~-~~~~~~~e~m~~~~~rPIIFpLS-NP  130 (222)
T d1vl6a1          90 DLETALEGADFFIGVS-RGNILKPEWIKKMSRKPVIFALA-NP  130 (222)
T ss_dssp             CHHHHHTTCSEEEECS-CSSCSCHHHHTTSCSSCEEEECC-SS
T ss_pred             chHhhccCcceecccc-ccccccHHHHhhcCCCCEEEecC-CC
Confidence            5667888899877544 35666655543   345666665 44

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.032  Score=48.41  Aligned_cols=149  Identities=11%  Similarity=0.090  Sum_probs=97.6

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCCCCCH----HHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhcCCcccccCc
Q 024116           22 SQTYVRNKIKACEEVGIKSIVTEFADGCTE----DEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG   97 (272)
Q Consensus        22 s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~----~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~i~p~KDvdg   97 (272)
                      |..=--+=..++.++|.++.++..+.....    |.+.+.++-|+.-  +++|.+-.+-.  -.......+-      ..
T Consensus        52 STRTR~SFe~A~~~LGg~~i~~~~~~~~~~~~kgEsi~Dt~~vls~~--~d~iv~R~~~~--~~~~~~~~~~------~~  121 (310)
T d1tuga1          52 STRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTY--VDAIVMRHPQE--GAARLATEFS------GN  121 (310)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEECCSSCHHHHTSCCHHHHHHHHTTT--CSEEEEEESSB--THHHHHTTTC------TT
T ss_pred             CcchhhhHHHHHHHhccccccccccccccccCCCccHHHhhhHhhhc--chheeeechhh--hhhHHHHHhc------cC
Confidence            444444667899999999988876554321    4577777777764  78888876532  2222211111      11


Q ss_pred             cccccccccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcC--CcccHHHHHHHHHhCC-CEEEEEeCC----
Q 024116           98 FHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGR--SNIVGLPTSLLLQRHH-ATVSIVHAL----  169 (272)
Q Consensus        98 ~~~~n~g~l~~~~~~~~~~p~Ta~g-~~~~l~~~~~~l~gk~v~ViG~--g~~vG~~la~~L~~~g-a~V~v~~~~----  169 (272)
                      +-.+|.|.      .+.+.||=+.+ ++.+.++.| +++|++++.+|-  ++.|...++..+...+ ..+++|+..    
T Consensus       122 vPVINAg~------~~~~HP~Q~LaD~~Ti~e~~g-~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~  194 (310)
T d1tuga1         122 VPVLNAGD------GSNQHPTQTLLDLFTIQETQG-RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAM  194 (310)
T ss_dssp             SCEEEEEE------TTSCCHHHHHHHHHHHHHHHS-CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCC
T ss_pred             ccEEECCC------CcccchHHHHHHHHHHHHHcC-CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCccccc
Confidence            23456421      23467998888 555555554 699999999997  2335778888888786 689988643    


Q ss_pred             -----------------CCCHhhhcCCCcEEEEec
Q 024116          170 -----------------TKNPEQITSEADIVIAAA  187 (272)
Q Consensus       170 -----------------t~~l~~~l~~ADIVIsa~  187 (272)
                                       +.++++.+++||+|.+..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~  229 (310)
T d1tuga1         195 PQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTR  229 (310)
T ss_dssp             CHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEECC
T ss_pred             chhcccccccccceeeeeechhhhccCCceeeecc
Confidence                             146778999999988543

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=95.76  E-value=0.0032  Score=55.17  Aligned_cols=91  Identities=7%  Similarity=0.109  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhC----CC-------EEEEEeCCC------------------
Q 024116          120 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----HA-------TVSIVHALT------------------  170 (272)
Q Consensus       120 a~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~----ga-------~V~v~~~~t------------------  170 (272)
                      ..|++..++-.+.+++.-+++++|+|.+ |-.++.+|...    |.       .+++++++-                  
T Consensus         9 lAglinAlki~gk~l~d~kivi~GAGaA-g~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d~~~~k~~~a~   87 (308)
T d1o0sa1           9 VAGLLTCTRVTKKLVSQEKYLFFGAGAA-STGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFAK   87 (308)
T ss_dssp             HHHHHHHHHHHCCCGGGCCEEEECCSHH-HHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTTCB
T ss_pred             HHHHHHHHHHhCCCHHHcEEEEECcCHH-HHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcccCHHHHHHHH
Confidence            3678888999999999999999999987 98888776533    32       489998651                  


Q ss_pred             -----CCHhhhcCC--CcEEEEecCCCccccCCCcC------CCcEEEEeeeCCC
Q 024116          171 -----KNPEQITSE--ADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  212 (272)
Q Consensus       171 -----~~l~~~l~~--ADIVIsa~g~p~~i~~~~vk------~g~vviDig~~~~  212 (272)
                           .+|.+.++.  -+++|-+.+.++.+++++++      +.-+|+=+. ||.
T Consensus        88 ~~~~~~~l~~~i~~~kptvliG~s~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  141 (308)
T d1o0sa1          88 DMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALS-NPT  141 (308)
T ss_dssp             SSCCCCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             hcccCCcHHHHHhccccccEEecccccCCCCHHHHHHHHhhCCCcEEEEcc-CCC
Confidence                 234444432  37888888889999999885      567888887 654

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.74  E-value=0.0058  Score=50.69  Aligned_cols=35  Identities=11%  Similarity=0.173  Sum_probs=32.2

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +||+|+|.|+++-+|++++..|+++|++|.++++.
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~   35 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVV   35 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            58999999998888999999999999999998764

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.70  E-value=0.016  Score=41.33  Aligned_cols=45  Identities=13%  Similarity=0.082  Sum_probs=35.2

Q ss_pred             ceEEEEcCCcccHH-HHHHHHHhCCCEEEEEeCCCCCHhhhcCCCcE
Q 024116          137 KNAVVIGRSNIVGL-PTSLLLQRHHATVSIVHALTKNPEQITSEADI  182 (272)
Q Consensus       137 k~v~ViG~g~~vG~-~la~~L~~~ga~V~v~~~~t~~l~~~l~~ADI  182 (272)
                      .|+-.||-||+ |. ++|.+|.++|+.|+-+++......+.|+...+
T Consensus         2 ~~ihfiGIgG~-GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi   47 (89)
T d1j6ua1           2 MKIHFVGIGGI-GMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGI   47 (89)
T ss_dssp             CEEEEETTTSH-HHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTC
T ss_pred             cEEEEEeECHH-HHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCC
Confidence            57889999997 88 78999999999999999876444444555443

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.70  E-value=0.0075  Score=44.51  Aligned_cols=36  Identities=31%  Similarity=0.437  Sum_probs=31.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      -..|+++|||+|-+ |--+|..|.+.|++|+++++..
T Consensus        19 ~~p~~vvIiGgG~~-G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          19 ALPQHLVVVGGGYI-GLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             SCCSEEEEECCSHH-HHHHHHHHHHHTCEEEEECSSS
T ss_pred             cCCCeEEEECCCHH-HHHHHHHHhhcccceEEEeeec
Confidence            34589999999775 9999999999999999998764

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=95.66  E-value=0.0061  Score=53.14  Aligned_cols=91  Identities=15%  Similarity=0.242  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhC----C-------CEEEEEeCCC------------------
Q 024116          120 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----H-------ATVSIVHALT------------------  170 (272)
Q Consensus       120 a~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~----g-------a~V~v~~~~t------------------  170 (272)
                      ..|++..++-.+.+|+.-++++.|+|-+ |-.++.+|...    |       ..+++|+++-                  
T Consensus         9 lAglinAlki~gk~l~d~kiV~~GAGsA-g~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~k~~~a~   87 (298)
T d1gq2a1           9 VAGLLAALRITKNRLSDHTVLFQGAGEA-ALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHFAH   87 (298)
T ss_dssp             HHHHHHHHHHHTSCGGGCCEEEECCSHH-HHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGGGCB
T ss_pred             HHHHHHHHHHhCCCHHHcEEEEECccHH-HHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHHHHHHHH
Confidence            4678899999999999999999999987 98888877522    3       2689998751                  


Q ss_pred             -----CCHhhhcCC--CcEEEEecCCCccccCCCcC------CCcEEEEeeeCCC
Q 024116          171 -----KNPEQITSE--ADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  212 (272)
Q Consensus       171 -----~~l~~~l~~--ADIVIsa~g~p~~i~~~~vk------~g~vviDig~~~~  212 (272)
                           .++.+.++.  .+++|-+++.++.+++++++      +.-+|+=+. ||.
T Consensus        88 ~~~~~~~l~~~i~~vkptvliG~s~~~g~ft~evv~~ma~~~~~PIIFaLS-NPt  141 (298)
T d1gq2a1          88 EHCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALS-NPT  141 (298)
T ss_dssp             SCCCCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             HhhhhhhhHHHhhccChheeEecccccCcCCHHHHHHHHhhCCCCEEEEcc-CCC
Confidence                 234444432  67999999999999998875      567888876 554

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.64  E-value=0.0058  Score=49.14  Aligned_cols=54  Identities=13%  Similarity=0.126  Sum_probs=40.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC-----------CCH----hhhcCCCcEEEEecCCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-----------KNP----EQITSEADIVIAAAGVA  190 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t-----------~~l----~~~l~~ADIVIsa~g~p  190 (272)
                      |||+|.|++|.+|+.++..|.++|.  +|+.+.|+.           .++    .......|.||.++|..
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhcccccccccchhhhhhccccchheeeeeeeee
Confidence            8999999999999999999999996  666666543           121    22234469999888753

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.62  E-value=0.0081  Score=48.34  Aligned_cols=73  Identities=29%  Similarity=0.459  Sum_probs=51.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC---------------------CCHhhhcCCCcEEEEecCCCc---
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT---------------------KNPEQITSEADIVIAAAGVAN---  191 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t---------------------~~l~~~l~~ADIVIsa~g~p~---  191 (272)
                      .||.|+|++|.+|+-+.++|.++- .++..+.+++                     .+.++...++|+|+.|++...   
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s~~   81 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGASYD   81 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHHHH
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHHHH
Confidence            379999999999999999998764 4655554332                     122344567999999998543   


Q ss_pred             cccCCCcCCCcEEEEeeeCCC
Q 024116          192 LVRGSWLKPGAVVLDVGTCPV  212 (272)
Q Consensus       192 ~i~~~~vk~g~vviDig~~~~  212 (272)
                      ++..  . .+..|||.+..+.
T Consensus        82 ~~~~--~-~~~~VIDlSadfR   99 (176)
T d1vkna1          82 LVRE--L-KGVKIIDLGADFR   99 (176)
T ss_dssp             HHTT--C-CSCEEEESSSTTT
T ss_pred             HHHh--h-ccceEEecCcccc
Confidence            2322  2 4789999987754

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.62  E-value=0.0081  Score=47.61  Aligned_cols=53  Identities=11%  Similarity=0.066  Sum_probs=40.0

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEE--EeCCC--------------------CCHhhhcCCCcEEEEecCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSI--VHALT--------------------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v--~~~~t--------------------~~l~~~l~~ADIVIsa~g~  189 (272)
                      ++|+|.|++|.+|+.++..|+++|.+|++  ..|+.                    .++.+.++.+|.||...+.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~   78 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA   78 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEee
Confidence            68999999999999999999999965443  44432                    1234667889999976653

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.61  E-value=0.017  Score=41.75  Aligned_cols=36  Identities=14%  Similarity=0.073  Sum_probs=31.0

Q ss_pred             ccceEEEEcCCcccHH-HHHHHHHhCCCEEEEEeCCCC
Q 024116          135 MGKNAVVIGRSNIVGL-PTSLLLQRHHATVSIVHALTK  171 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~-~la~~L~~~ga~V~v~~~~t~  171 (272)
                      +.|++-+||-||+ |. ++|..|.++|.+|+-++....
T Consensus         7 ~~~~ihfiGigG~-GMs~LA~~L~~~G~~VsGSD~~~~   43 (96)
T d1p3da1           7 RVQQIHFIGIGGA-GMSGIAEILLNEGYQISGSDIADG   43 (96)
T ss_dssp             TCCEEEEETTTST-THHHHHHHHHHHTCEEEEEESCCS
T ss_pred             hCCEEEEEEECHH-HHHHHHHHHHhCCCEEEEEeCCCC
Confidence            5789999999997 85 559999999999999997643

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.61  E-value=0.0056  Score=47.85  Aligned_cols=54  Identities=13%  Similarity=0.241  Sum_probs=39.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC-E------EEEEeCC--------------------------CCCHhhhcCCCcEE
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHA-T------VSIVHAL--------------------------TKNPEQITSEADIV  183 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga-~------V~v~~~~--------------------------t~~l~~~l~~ADIV  183 (272)
                      .||+|+|++|.||.+++..|+..+. .      ..++...                          +.+.++.+++||+|
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~advV   84 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYA   84 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccEE
Confidence            4899999866689999999887652 1      1222111                          14567899999999


Q ss_pred             EEecCCC
Q 024116          184 IAAAGVA  190 (272)
Q Consensus       184 Isa~g~p  190 (272)
                      |.+.|.|
T Consensus        85 iitaG~~   91 (154)
T d1y7ta1          85 LLVGAAP   91 (154)
T ss_dssp             EECCCCC
T ss_pred             EeecCcC
Confidence            9999865

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.58  E-value=0.0071  Score=47.26  Aligned_cols=55  Identities=11%  Similarity=0.173  Sum_probs=39.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC-------EEEEEeCC--------------------------CCCHhhhcCCCcEE
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHA-------TVSIVHAL--------------------------TKNPEQITSEADIV  183 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga-------~V~v~~~~--------------------------t~~l~~~l~~ADIV  183 (272)
                      -||+|+|++|.||..++..|...+.       .....+..                          ..+.++.++++|+|
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvV   83 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA   83 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEE
Confidence            4899999866689999998876541       23333321                          13567899999999


Q ss_pred             EEecCCCc
Q 024116          184 IAAAGVAN  191 (272)
Q Consensus       184 Isa~g~p~  191 (272)
                      |.+.|.|.
T Consensus        84 Vitag~~~   91 (154)
T d5mdha1          84 ILVGSMPR   91 (154)
T ss_dssp             EECCSCCC
T ss_pred             EEecccCC
Confidence            99998664

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.58  E-value=0.0042  Score=50.86  Aligned_cols=36  Identities=19%  Similarity=0.288  Sum_probs=32.1

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK  171 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~  171 (272)
                      +|+++|-|++.-+|++++..|+++|++|.++.++.+
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            588999998777899999999999999999998753

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.57  E-value=0.006  Score=49.33  Aligned_cols=54  Identities=20%  Similarity=0.271  Sum_probs=47.8

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCcEEEEecC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAG  188 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------~~l~~~l~~ADIVIsa~g  188 (272)
                      +++|+|.|||+|.- |++=|..|...|.+|+|--|..              .++.|..+.||||.-.++
T Consensus        14 ik~k~IaViGYGsQ-G~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~~~eA~~~aDiim~L~P   81 (182)
T d1np3a2          14 IQGKKVAIIGYGSQ-GHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTP   81 (182)
T ss_dssp             HHTSCEEEECCSHH-HHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSC
T ss_pred             HCCCEEEEEeeCcH-hHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccccHHHHhhhcCeeeeecc
Confidence            47999999999886 9999999999999999998763              256799999999998887

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.55  E-value=0.025  Score=44.75  Aligned_cols=97  Identities=14%  Similarity=0.127  Sum_probs=63.6

Q ss_pred             cccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC--------------------C-
Q 024116          115 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK--------------------N-  172 (272)
Q Consensus       115 ~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t~--------------------~-  172 (272)
                      .++|.-...+..+.+..---.|.+|+|+|.|+. |..+++.+...|+ +|++++++.+                    + 
T Consensus         9 ~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~Ggv-Gl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~   87 (176)
T d1d1ta2           9 LIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGV-GLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKP   87 (176)
T ss_dssp             GGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSC
T ss_pred             hhhhHHHHHHHHHHHhhCCCCCCEEEEECCCch-hHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchH
Confidence            456644444444433333347999999999985 9999999999995 7988876421                    1 


Q ss_pred             Hh---hhc--CCCcEEEEecCCCccc-c-CCCc-CCCcEEEEeeeCCC
Q 024116          173 PE---QIT--SEADIVIAAAGVANLV-R-GSWL-KPGAVVLDVGTCPV  212 (272)
Q Consensus       173 l~---~~l--~~ADIVIsa~g~p~~i-~-~~~v-k~g~vviDig~~~~  212 (272)
                      .+   +.+  ..+|++|.++|.+..+ . ...+ +.+-.++-+|..+.
T Consensus        88 ~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~  135 (176)
T d1d1ta2          88 ISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPS  135 (176)
T ss_dssp             HHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCT
T ss_pred             HHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEcccc
Confidence            11   112  4589999999987642 2 2233 44457778887654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.47  E-value=0.013  Score=46.04  Aligned_cols=95  Identities=16%  Similarity=0.153  Sum_probs=60.7

Q ss_pred             cccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC---------------------C
Q 024116          115 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK---------------------N  172 (272)
Q Consensus       115 ~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t~---------------------~  172 (272)
                      .++|.....+..+.+..---.|.+|+|+|+|+. |-.+++++...|+ .|+++.++..                     .
T Consensus         8 ~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~-G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~   86 (176)
T d2jhfa2           8 LIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGV-GLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKP   86 (176)
T ss_dssp             GGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSC
T ss_pred             HhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCc-HHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhH
Confidence            457765555555544443447999999999995 8889999999985 7777765421                     1


Q ss_pred             Hhhhc-----CCCcEEEEecCCCcccc--CCCcCCC-cEEEEeeeC
Q 024116          173 PEQIT-----SEADIVIAAAGVANLVR--GSWLKPG-AVVLDVGTC  210 (272)
Q Consensus       173 l~~~l-----~~ADIVIsa~g~p~~i~--~~~vk~g-~vviDig~~  210 (272)
                      ..+..     ..+|++|.++|.+..+.  .++++.+ ..++=.+..
T Consensus        87 ~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~  132 (176)
T d2jhfa2          87 IQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVP  132 (176)
T ss_dssp             HHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCC
T ss_pred             HHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCC
Confidence            11111     34799999999876542  2355553 344434433

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0064  Score=49.57  Aligned_cols=35  Identities=23%  Similarity=0.320  Sum_probs=31.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +-+||+|||+|-+ |-.+|..|+++|.+|+|+....
T Consensus         4 ~~~kViVIGaG~a-GL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGSGVS-GLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECCBHH-HHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHH-HHHHHHHHHhCCCCEEEEeCCC
Confidence            4578999999998 9999999999999999997653

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.40  E-value=0.015  Score=45.11  Aligned_cols=55  Identities=20%  Similarity=0.312  Sum_probs=40.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC-------------------------CCHhhhcCCCcEEEEecCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-------------------------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t-------------------------~~l~~~l~~ADIVIsa~g~  189 (272)
                      .||.|||+.|.||..++..|..++.  ++.+++...                         ..-.+.+++||+||.+.|.
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvitaG~   80 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI   80 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEeccc
Confidence            3799999544479999999999984  677775321                         0114668999999988886


Q ss_pred             Cc
Q 024116          190 AN  191 (272)
Q Consensus       190 p~  191 (272)
                      |.
T Consensus        81 ~~   82 (142)
T d1o6za1          81 PR   82 (142)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.39  E-value=0.015  Score=45.07  Aligned_cols=71  Identities=20%  Similarity=0.291  Sum_probs=52.2

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------CHhhhcCCCcEEEEecCCCccc------cCCCc
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITSEADIVIAAAGVANLV------RGSWL  198 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------------~l~~~l~~ADIVIsa~g~p~~i------~~~~v  198 (272)
                      ||-+||-|.+ |.+++..|.+.|..+ +.+++.+             ...+.+.++|++|+....+.-+      -.+..
T Consensus         2 kIg~IGlG~M-G~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~   79 (156)
T d2cvza2           2 KVAFIGLGAM-GYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYL   79 (156)
T ss_dssp             CEEEECCSTT-HHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTTC
T ss_pred             eEEEEeHHHH-HHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhhccccccc
Confidence            6899999986 999999999888754 6776641             2346677899999887754321      12346


Q ss_pred             CCCcEEEEeeeC
Q 024116          199 KPGAVVLDVGTC  210 (272)
Q Consensus       199 k~g~vviDig~~  210 (272)
                      +++.++||....
T Consensus        80 ~~~~~iid~sT~   91 (156)
T d2cvza2          80 REGTYWVDATSG   91 (156)
T ss_dssp             CTTEEEEECSCC
T ss_pred             cccccccccccC
Confidence            789999998865

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.33  E-value=0.0074  Score=52.31  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=32.0

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +.|||+|||+|-+ |-.+|..|+++|.+|+|+.++.
T Consensus         1 k~KKI~IIGaG~s-GL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           1 KSKKILIVGAGFS-GAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCCEEEEECCSHH-HHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCEEEEECCcHH-HHHHHHHHHhCCCCEEEEECCC
Confidence            4799999999987 9999999999999999998764

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.29  E-value=0.021  Score=45.32  Aligned_cols=56  Identities=21%  Similarity=0.304  Sum_probs=38.7

Q ss_pred             ccceEEEEcCCcccHHHH--HHHHHhCC----CEEEEEeCC--------------------------CCCHhhhcCCCcE
Q 024116          135 MGKNAVVIGRSNIVGLPT--SLLLQRHH----ATVSIVHAL--------------------------TKNPEQITSEADI  182 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~l--a~~L~~~g----a~V~v~~~~--------------------------t~~l~~~l~~ADI  182 (272)
                      +.-|++|||+|.. |-+.  ..+|....    .++..++..                          +.+.++.++.||+
T Consensus         2 k~~KI~iIGaGsv-~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~   80 (167)
T d1u8xx1           2 KSFSIVIAGGGST-FTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDF   80 (167)
T ss_dssp             CCEEEEEECTTSS-SHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSE
T ss_pred             CCceEEEECCChh-hhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCE
Confidence            4568999999874 6552  23333222    377777643                          2477899999999


Q ss_pred             EEEecCCCc
Q 024116          183 VIAAAGVAN  191 (272)
Q Consensus       183 VIsa~g~p~  191 (272)
                      ||+++|.+.
T Consensus        81 Vvitag~~~   89 (167)
T d1u8xx1          81 VMAHIRVGK   89 (167)
T ss_dssp             EEECCCTTH
T ss_pred             EEECCCcCC
Confidence            999999754

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.27  E-value=0.0061  Score=50.52  Aligned_cols=52  Identities=17%  Similarity=0.215  Sum_probs=39.5

Q ss_pred             CCHHHHHHHHHHhC-CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          118 CTPKGCIELLIRSG-VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       118 ~Ta~g~~~~l~~~~-~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ...+..++..+..- -.-..|+|+|||+|-+ |-.+|..|+++|.+|+|+.+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~pkkV~IIGaG~a-GLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          11 NDYEEFLEIARNGLKATSNPKHVVIVGAGMA-GLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             TTHHHHHHHHHHCSCCCSSCCEEEEECCBHH-HHHHHHHHHHHTCEEEEECSSS
T ss_pred             ccHHHHHHHHhcCCCCCCCCCeEEEECCCHH-HHHHHHHHHHCCCCEEEEeCCC
Confidence            33466666654322 2336789999999887 9999999999999999998653

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.22  E-value=0.011  Score=43.53  Aligned_cols=36  Identities=25%  Similarity=0.350  Sum_probs=32.0

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK  171 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~  171 (272)
                      ..|+++|||+|-+ |--+|..|.+.|.+||++++..+
T Consensus        21 ~p~~v~IiGgG~i-g~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          21 VPKSLVVIGGGYI-GIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CCSEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEECCCcc-ceeeeeeecccccEEEEEEecce
Confidence            3589999999875 99999999999999999998753

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=95.22  E-value=0.012  Score=50.08  Aligned_cols=49  Identities=18%  Similarity=0.213  Sum_probs=40.4

Q ss_pred             cCCHHHHHHH----HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEE
Q 024116          117 PCTPKGCIEL----LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV  166 (272)
Q Consensus       117 p~Ta~g~~~~----l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~  166 (272)
                      .+|.+|++..    +++.+.+++||+|+|=|.|. ||..++..|.+.|++|+.+
T Consensus        13 eATG~Gv~~~~~~~~~~~~~~l~g~~v~IQGfGn-VG~~~a~~L~e~Gakvvav   65 (255)
T d1bgva1          13 EATGYGSVYYVEAVMKHENDTLVGKTVALAGFGN-VAWGAAKKLAELGAKAVTL   65 (255)
T ss_dssp             THHHHHHHHHHHHHHHHTTCCSTTCEEEECCSSH-HHHHHHHHHHHHTCEEEEE
T ss_pred             ccchHHHHHHHHHHHHhCCCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEE
Confidence            4688886554    45568899999999999988 5999999999999986543

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.18  E-value=0.01  Score=49.88  Aligned_cols=33  Identities=24%  Similarity=0.282  Sum_probs=28.6

Q ss_pred             ceE-EEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          137 KNA-VVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       137 k~v-~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ||| +|.|++.-+|++++..|+++|++|.++.|+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~   34 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYN   34 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECC
Confidence            565 666887777999999999999999999886

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.18  E-value=0.01  Score=49.86  Aligned_cols=48  Identities=25%  Similarity=0.265  Sum_probs=38.3

Q ss_pred             CCHHHHH----HHHHHhCCCCccceEEEEcCCcccHHHHHHHHHh-CCCEEEEE
Q 024116          118 CTPKGCI----ELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR-HHATVSIV  166 (272)
Q Consensus       118 ~Ta~g~~----~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~-~ga~V~v~  166 (272)
                      +|++|+.    +.+++.+.+++||+|+|=|.|. ||..+++.|.+ .|+.|+.+
T Consensus         9 ATg~Gv~~~~~~~~~~~~~~l~g~~vaIqG~Gn-VG~~~a~~L~~e~Ga~vv~v   61 (234)
T d1b26a1           9 ATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGN-VGQFAALLISQELGSKVVAV   61 (234)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCTTTCEEEEECCSH-HHHHHHHHHHHHHCCEEEEE
T ss_pred             hhhHHHHHHHHHHHHHcCCCcCCCEEEEECCCH-HHHHHHHHHHHhcCCceEEe
Confidence            4667755    4566778899999999999988 59999999965 59976654

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=95.17  E-value=0.017  Score=47.98  Aligned_cols=58  Identities=21%  Similarity=0.290  Sum_probs=44.4

Q ss_pred             CCccceEEEEc----------------CCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------CHhhh
Q 024116          133 EIMGKNAVVIG----------------RSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQI  176 (272)
Q Consensus       133 ~l~gk~v~ViG----------------~g~~vG~~la~~L~~~ga~V~v~~~~t~--------------------~l~~~  176 (272)
                      +|+|++|+|-+                .||-.|.++|..+..+||+|++++....                    .+.+.
T Consensus         3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p~~~~~~~~~t~~~m~~~~~~~   82 (223)
T d1u7za_           3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNAS   82 (223)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCcccccccceehhhHHHHHHHHhh
Confidence            68999999986                3445699999999999999999986431                    12356


Q ss_pred             cCCCcEEEEecCCC
Q 024116          177 TSEADIVIAAAGVA  190 (272)
Q Consensus       177 l~~ADIVIsa~g~p  190 (272)
                      ++++|++|.+.-..
T Consensus        83 ~~~~D~~i~aAAvs   96 (223)
T d1u7za_          83 VQQQNIFIGCAAVA   96 (223)
T ss_dssp             GGGCSEEEECCBCC
T ss_pred             hccceeEeeeechh
Confidence            68999999665543

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=95.14  E-value=0.0085  Score=49.34  Aligned_cols=35  Identities=9%  Similarity=0.074  Sum_probs=32.0

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      -|||+|.|++|.+|+.++..|.++|.+|+++.|..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~   37 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   37 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence            48999999999999999999999999999998764

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.07  E-value=0.0085  Score=45.79  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=29.7

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCC--CEEEEEeCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHAL  169 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~g--a~V~v~~~~  169 (272)
                      .||||+|||+|-+ |..+|..|.+.+  .+|+++++.
T Consensus         1 ~gkrivIvGgG~~-G~e~A~~l~~~~~~~~Vtlie~~   36 (186)
T d1fcda1           1 AGRKVVVVGGGTG-GATAAKYIKLADPSIEVTLIEPN   36 (186)
T ss_dssp             CCCEEEEECCSHH-HHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CCCcEEEECccHH-HHHHHHHHHHcCCCCcEEEEECC
Confidence            4899999999886 999999999887  589998754

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.06  E-value=0.016  Score=45.64  Aligned_cols=53  Identities=17%  Similarity=0.026  Sum_probs=38.2

Q ss_pred             eEEEEcCCcccHHHHHHHHH--hC----CCEEEEEeCC-----------------------CCCHhhhcCCCcEEEEecC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQ--RH----HATVSIVHAL-----------------------TKNPEQITSEADIVIAAAG  188 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~--~~----ga~V~v~~~~-----------------------t~~l~~~l~~ADIVIsa~g  188 (272)
                      |+.|||+|. +|.+.+....  ..    ..++.+.+.+                       +.+.++.+++||+||.+.|
T Consensus         2 KIaiIGaGs-~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           2 RIAVIGGGS-SYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             EEEEETTTC-TTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             EEEEECCCH-HHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            789999987 4766664322  22    2478888653                       2467899999999999999


Q ss_pred             CCc
Q 024116          189 VAN  191 (272)
Q Consensus       189 ~p~  191 (272)
                      .|.
T Consensus        81 ~~~   83 (162)
T d1up7a1          81 PGG   83 (162)
T ss_dssp             TTH
T ss_pred             cCC
Confidence            764

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=95.05  E-value=0.024  Score=45.36  Aligned_cols=57  Identities=11%  Similarity=0.135  Sum_probs=41.4

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCC---C----EEEEEeCC--------------------------CCCHhhhcCCCc
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHH---A----TVSIVHAL--------------------------TKNPEQITSEAD  181 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~g---a----~V~v~~~~--------------------------t~~l~~~l~~AD  181 (272)
                      +-.||+|+|++|.||.+++..|+...   .    .+.+.+..                          +.+.++.+++||
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aD  102 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD  102 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCc
Confidence            45689999987778999999888643   1    33334322                          246678999999


Q ss_pred             EEEEecCCCc
Q 024116          182 IVIAAAGVAN  191 (272)
Q Consensus       182 IVIsa~g~p~  191 (272)
                      +||.+.|.|.
T Consensus       103 vVvi~ag~~r  112 (175)
T d7mdha1         103 WALLIGAKPR  112 (175)
T ss_dssp             EEEECCCCCC
T ss_pred             eEEEeeccCC
Confidence            9998888653

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.04  E-value=0.015  Score=43.40  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=31.9

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+|+++|||+|-+ |--+|..|.++|.+|+++++..
T Consensus        29 ~~~~vvIIGgG~i-G~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          29 PQSRLLIVGGGVI-GLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             TTCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCeEEEECcchh-HHHHHHHhhcccceEEEEeecc
Confidence            5799999999885 9999999999999999999865

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.03  E-value=0.0079  Score=47.99  Aligned_cols=76  Identities=21%  Similarity=0.377  Sum_probs=51.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhC-CCEEEEEe-CC--C------------------------CCHhhhcCCCcEEEEecC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRH-HATVSIVH-AL--T------------------------KNPEQITSEADIVIAAAG  188 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~-ga~V~v~~-~~--t------------------------~~l~~~l~~ADIVIsa~g  188 (272)
                      .||.|+|++|.+|+-+.++|.++ ..++.-+. +.  .                        .+......+.|+++.+.+
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp   81 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA   81 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence            37999999999999999999987 45554332 11  0                        011233567899999987


Q ss_pred             CCc--cccCCCcCCCcEEEEeeeCCC
Q 024116          189 VAN--LVRGSWLKPGAVVLDVGTCPV  212 (272)
Q Consensus       189 ~p~--~i~~~~vk~g~vviDig~~~~  212 (272)
                      ...  -+-+...+.+..|||.+..+.
T Consensus        82 ~~~s~~~~~~~~~~~~~vIDlSadfR  107 (179)
T d2g17a1          82 HEVSHDLAPQFLQAGCVVFDLSGAFR  107 (179)
T ss_dssp             HHHHHHHHHHHHHTTCEEEECSSTTS
T ss_pred             chhHHHHhhhhhhcCceeeccccccc
Confidence            432  133344577899999987654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.02  E-value=0.013  Score=45.79  Aligned_cols=86  Identities=14%  Similarity=0.143  Sum_probs=56.6

Q ss_pred             cccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC---------------------C
Q 024116          115 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK---------------------N  172 (272)
Q Consensus       115 ~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t~---------------------~  172 (272)
                      .++|.....+..+.+..---.|.+|+|.|+|+. |..+++.+...|+ .|+++.++..                     +
T Consensus         8 ~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGv-G~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~   86 (176)
T d2fzwa2           8 LLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGV-GLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKP   86 (176)
T ss_dssp             GGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHH-HHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSC
T ss_pred             HhhcHHHHHHHHHHHhhCCCCCCEEEEecchhH-HHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhH
Confidence            457766656666654433347999999999985 9999999999996 5666654321                     1


Q ss_pred             Hhhhc-----CCCcEEEEecCCCcccc--CCCcCCC
Q 024116          173 PEQIT-----SEADIVIAAAGVANLVR--GSWLKPG  201 (272)
Q Consensus       173 l~~~l-----~~ADIVIsa~g~p~~i~--~~~vk~g  201 (272)
                      ..+.+     .-+|+||.++|.+..+.  ..+.++|
T Consensus        87 ~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g  122 (176)
T d2fzwa2          87 IQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKG  122 (176)
T ss_dssp             HHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTT
T ss_pred             HHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCC
Confidence            11111     34799999999876542  2345665

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.95  E-value=0.014  Score=43.11  Aligned_cols=34  Identities=15%  Similarity=0.258  Sum_probs=31.1

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      -|+++|||+|-+ |--+|..|.+.|++|+++++..
T Consensus        21 p~~vvIiGgG~i-g~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGAGYI-GVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEECCChh-hHHHHHHhhccccEEEEEeecc
Confidence            489999999885 9999999999999999999875

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.93  E-value=0.014  Score=43.41  Aligned_cols=34  Identities=15%  Similarity=0.141  Sum_probs=31.1

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .|+++|||+|-+ |--+|..|++.|++|+++++..
T Consensus        22 p~~v~IiGgG~i-G~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYI-AVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCEEEEECCchH-HHHHHHHHHhccccceeeehhc
Confidence            589999999875 9999999999999999999865

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.87  E-value=0.029  Score=41.18  Aligned_cols=36  Identities=14%  Similarity=0.185  Sum_probs=32.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ..+|+++|||+|-+ |--+|..|.+.|++|+++++..
T Consensus        20 ~~~~~vvVvGgG~i-g~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          20 EPGSTVVVVGGSKT-AVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CCCSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCEEEEECCCHH-HHHHHHHHHhcchhheEeeccc
Confidence            46899999999885 9999999999999999999864

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.86  E-value=0.017  Score=48.53  Aligned_cols=50  Identities=20%  Similarity=0.305  Sum_probs=37.9

Q ss_pred             CCHHHHH----HHHHHhCCC-CccceEEEEcCCcccHHHHHHHHHh-CCCEEE-EEeC
Q 024116          118 CTPKGCI----ELLIRSGVE-IMGKNAVVIGRSNIVGLPTSLLLQR-HHATVS-IVHA  168 (272)
Q Consensus       118 ~Ta~g~~----~~l~~~~~~-l~gk~v~ViG~g~~vG~~la~~L~~-~ga~V~-v~~~  168 (272)
                      +|++|+.    ++++..+.+ ++||+|+|-|.|. ||..++++|.+ .|+.|+ ++++
T Consensus         9 ATg~Gv~~~~~~~~~~~g~~~l~g~~v~IqGfGn-VG~~~a~~L~~~~G~kvv~vsD~   65 (239)
T d1gtma1           9 ATARGASYTIREAAKVLGWDTLKGKTIAIQGYGN-AGYYLAKIMSEDFGMKVVAVSDS   65 (239)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSCSTTCEEEEECCSH-HHHHHHHHHHHTTCCEEEEEECS
T ss_pred             hhhHHHHHHHHHHHHHhCCCCcCCCEEEEECCCH-HHHHHHHHHHHhcCcceeecccc
Confidence            5777766    455666764 9999999999988 69999999875 588654 4443

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.83  E-value=0.0096  Score=46.98  Aligned_cols=74  Identities=11%  Similarity=0.168  Sum_probs=49.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH-------------------------hhhcCCCcEEEEecCCCc
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP-------------------------EQITSEADIVIAAAGVAN  191 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~l-------------------------~~~l~~ADIVIsa~g~p~  191 (272)
                      .||-|||-|.+ |.+++..|++.|.+|++++|+....                         ...+..++.++..+....
T Consensus         2 MkIGvIGlG~M-G~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (178)
T d1pgja2           2 MDVGVVGLGVM-GANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGA   80 (178)
T ss_dssp             BSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSH
T ss_pred             CEEEEEeehHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcc
Confidence            36899999996 9999999999999999999863211                         123344555554444322


Q ss_pred             cc------cCCCcCCCcEEEEeeeCC
Q 024116          192 LV------RGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       192 ~i------~~~~vk~g~vviDig~~~  211 (272)
                      .+      -...++++.+++|.....
T Consensus        81 ~~~~~~~~~~~~~~~~~iii~~st~~  106 (178)
T d1pgja2          81 ATDSTIEQLKKVFEKGDILVDTGNAH  106 (178)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEECCCCC
T ss_pred             hhhhhhhhhhhhccccceecccCccc
Confidence            11      112467889999988653

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.79  E-value=0.018  Score=49.93  Aligned_cols=48  Identities=27%  Similarity=0.232  Sum_probs=38.6

Q ss_pred             CCHHHHHHHHHHh------------CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEE
Q 024116          118 CTPKGCIELLIRS------------GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV  166 (272)
Q Consensus       118 ~Ta~g~~~~l~~~------------~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~  166 (272)
                      +|.+|++..+++.            ..+++||+|+|=|.|. ||..++..|.+.|++|+.+
T Consensus         6 ATG~GV~~~~~~~l~~~~~~~~~gl~~~L~gktvaIqGfGn-VG~~~A~~L~e~Gakvv~v   65 (293)
T d1hwxa1           6 ATGRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQGFGN-VGLHSMRYLHRFGAKCVAV   65 (293)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHTCCSSSTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEE
T ss_pred             HhHHHHHHHHHHHHHhcccchhccCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEE
Confidence            4677777666542            2478999999999988 5999999999999986544

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.74  E-value=0.0083  Score=43.83  Aligned_cols=38  Identities=13%  Similarity=0.059  Sum_probs=31.8

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++||+|+|||.|.. |.=++..|+....+|++++++.
T Consensus        28 ~~f~gK~VlVVG~g~S-a~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          28 ELFVGESVLVVGGASS-ANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             GGGTTCCEEEECSSHH-HHHHHHHHTTTSCSSEEEECTT
T ss_pred             hhcCCCeEEEECCCCC-HHHHHHHHHHhcCEEEEEEecC
Confidence            3579999999999998 9999999998887777666654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.66  E-value=0.018  Score=42.95  Aligned_cols=34  Identities=26%  Similarity=0.348  Sum_probs=30.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      -|+++|||+|-+ |--+|.+|.+.|++||++++..
T Consensus        23 p~~~vIiG~G~i-g~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGGGII-GLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECCCch-HHHHHHHHHhhCcceeEEEecc
Confidence            489999999775 9999999999999999998865

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.018  Score=43.05  Aligned_cols=34  Identities=15%  Similarity=0.212  Sum_probs=31.1

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      -|+++|||+|-+ |--+|..|.+.|.+|+++++..
T Consensus        22 pk~vvIvGgG~i-G~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGYI-AVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEEcCCcc-HHHHHHHHhcCCcEEEEEeecc
Confidence            489999999875 9999999999999999999875

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.65  E-value=0.0065  Score=50.94  Aligned_cols=38  Identities=16%  Similarity=0.079  Sum_probs=33.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHh---CCCEEEEEeCCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQR---HHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~---~ga~V~v~~~~t  170 (272)
                      .|+||.++|-|++.=+|++++..|++   +|++|.++.|+.
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~   43 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSE   43 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCH
Confidence            57999999999987779999999986   789999998874

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.60  E-value=0.021  Score=43.22  Aligned_cols=36  Identities=22%  Similarity=0.362  Sum_probs=32.5

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK  171 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~  171 (272)
                      .+|+++|||+|-+ |--+|..|.+.|.+|+++++...
T Consensus        34 ~~k~v~VIGgG~i-G~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIGGGYI-GLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCEEEEECCchH-HHHHHHHHHhhCcceeeeeeccc
Confidence            5799999999885 99999999999999999998753

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.59  E-value=0.043  Score=44.73  Aligned_cols=53  Identities=23%  Similarity=0.320  Sum_probs=38.8

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHH--------------------hCCC-EEEEEeCCCC--------CHhhhcCCCc
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQ--------------------RHHA-TVSIVHALTK--------NPEQITSEAD  181 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~--------------------~~ga-~V~v~~~~t~--------~l~~~l~~AD  181 (272)
                      ..++.||+|+|||.|.+ +.=+|.+|+                    +.|+ +|+++-|+..        ++.+.++-.+
T Consensus        34 ~~~~~gk~VvVIGgGNv-AlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~~~~ft~~Elre~~~l~~  112 (216)
T d1lqta1          34 SPDLSGARAVVIGNGNV-ALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDG  112 (216)
T ss_dssp             CCCCCSSEEEEECCSHH-HHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTT
T ss_pred             CccccCceEEEECCCch-hHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChHhCCCChhhhhhhcccCC
Confidence            35678999999999985 988888877                    5676 7999988752        3455554444


Q ss_pred             EEE
Q 024116          182 IVI  184 (272)
Q Consensus       182 IVI  184 (272)
                      .-+
T Consensus       113 ~~~  115 (216)
T d1lqta1         113 VDV  115 (216)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            433

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.58  E-value=0.035  Score=43.23  Aligned_cols=96  Identities=16%  Similarity=0.158  Sum_probs=59.0

Q ss_pred             cccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCCCH--------------------
Q 024116          115 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTKNP--------------------  173 (272)
Q Consensus       115 ~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t~~l--------------------  173 (272)
                      .++|.....+..+.+..---.|.+|+|+|.|+. |-.++.++...|+ .|+++.++...+                    
T Consensus         8 ~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~-g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~   86 (175)
T d1cdoa2           8 LLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAV-GLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEP   86 (175)
T ss_dssp             GGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSC
T ss_pred             HhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCc-cchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchh
Confidence            456755555555544433347899999999995 7777777888886 677776553111                    


Q ss_pred             -hhhc-----CCCcEEEEecCCCcccc--CCCcCC-CcEEEEeeeCC
Q 024116          174 -EQIT-----SEADIVIAAAGVANLVR--GSWLKP-GAVVLDVGTCP  211 (272)
Q Consensus       174 -~~~l-----~~ADIVIsa~g~p~~i~--~~~vk~-g~vviDig~~~  211 (272)
                       ++..     +-+|+++.++|.+..+.  ..+.++ +.+++=+|.++
T Consensus        87 ~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~  133 (175)
T d1cdoa2          87 ISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTD  133 (175)
T ss_dssp             HHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCS
T ss_pred             HHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecC
Confidence             1111     34799999998765432  133444 35555555543

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.58  E-value=0.034  Score=43.32  Aligned_cols=54  Identities=20%  Similarity=0.232  Sum_probs=44.1

Q ss_pred             CccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC-------------------------CCCHhhhcCCCcEEEEec
Q 024116          134 IMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL-------------------------TKNPEQITSEADIVIAAA  187 (272)
Q Consensus       134 l~gk~v~ViG~g-~~vG~~la~~L~~~ga~V~v~~~~-------------------------t~~l~~~l~~ADIVIsa~  187 (272)
                      |+|++++.||-+ .-|.+.++.++...|+++++|.-.                         +.++++.++.||+|.+..
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence            689999999943 346999999999999999999643                         246788999999998654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.57  E-value=0.012  Score=45.94  Aligned_cols=34  Identities=18%  Similarity=0.101  Sum_probs=30.1

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .-.|+|||+|-. |..+|..|+++|.+|+|+.++.
T Consensus         5 ~yDviViGaG~~-Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           5 DYDVIVLGTGIT-ECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             BCSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSS
T ss_pred             cCCEEEECcCHH-HHHHHHHHHHCCCCEEEEcCCC
Confidence            346899999887 9999999999999999998863

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.55  E-value=0.017  Score=47.06  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=30.8

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ..+||+|||+|-+ |-.+|..|+++|.+|+|+++.
T Consensus         3 ~~~kV~IiGaG~a-Gl~~A~~L~~~G~~v~v~Er~   36 (265)
T d2voua1           3 TTDRIAVVGGSIS-GLTAALMLRDAGVDVDVYERS   36 (265)
T ss_dssp             CCSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCcEEEECcCHH-HHHHHHHHHHCCCCEEEEeCC
Confidence            3579999999886 999999999999999999875

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.43  E-value=0.018  Score=42.84  Aligned_cols=35  Identities=26%  Similarity=0.292  Sum_probs=31.5

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+|+++|||+|-+ |--+|..|.+.|++|+++++..
T Consensus        31 ~~~~vvIiGgG~i-G~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          31 NSGEAIIIGGGFI-GLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HHSEEEEEECSHH-HHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCcEEEECCcHH-HHHHHHHhhcccceEEEEeccc
Confidence            4689999999885 9999999999999999998764

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.41  E-value=0.013  Score=45.65  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=28.5

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT  170 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t  170 (272)
                      +|+|||+|-+ |-.+|..|+++|. +|+|+.+..
T Consensus         2 ~V~IIGaG~a-GL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMS-GISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHH-HHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHH-HHHHHHHHHhCCCCcEEEEECCC
Confidence            5999999887 9999999999995 799998753

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.41  E-value=0.035  Score=43.87  Aligned_cols=54  Identities=20%  Similarity=0.166  Sum_probs=36.8

Q ss_pred             ceEEEEcCCcccH--HHHHHHHHhCC----CEEEEEeCC----------------------------CCCHhhhcCCCcE
Q 024116          137 KNAVVIGRSNIVG--LPTSLLLQRHH----ATVSIVHAL----------------------------TKNPEQITSEADI  182 (272)
Q Consensus       137 k~v~ViG~g~~vG--~~la~~L~~~g----a~V~v~~~~----------------------------t~~l~~~l~~ADI  182 (272)
                      .|++|||+|.. |  ..++..++...    .++...+.+                            +.+.++.++.||+
T Consensus         2 ~KI~iIGaGs~-~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDv   80 (169)
T d1s6ya1           2 LKIATIGGGSS-YTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF   80 (169)
T ss_dssp             EEEEEETTTCT-THHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             cEEEEECCChh-hHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCE
Confidence            37899999753 4  34444454432    377777643                            1456788999999


Q ss_pred             EEEecCCCc
Q 024116          183 VIAAAGVAN  191 (272)
Q Consensus       183 VIsa~g~p~  191 (272)
                      ||+++|.+.
T Consensus        81 Vv~ta~~~~   89 (169)
T d1s6ya1          81 VTTQFRVGG   89 (169)
T ss_dssp             EEECCCTTH
T ss_pred             EEEccccCC
Confidence            999998764

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.39  E-value=0.019  Score=48.42  Aligned_cols=33  Identities=24%  Similarity=0.145  Sum_probs=30.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      |+|+|.|++|.+|+.++..|+++|.+|+.+.|.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~   33 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVAR   33 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            799999999999999999999999999988765

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=94.31  E-value=0.021  Score=49.09  Aligned_cols=36  Identities=14%  Similarity=0.020  Sum_probs=32.8

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +-|+|+|+|++|.+|+.++..|+++|.+|++..|+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            358999999999999999999999999999998864

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.26  E-value=0.02  Score=47.05  Aligned_cols=35  Identities=14%  Similarity=0.192  Sum_probs=31.8

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++||+|.|+++-+|++++..|+++|++|.++.++.
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~   36 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSA   36 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            56799999998899999999999999999998864

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.21  E-value=0.024  Score=46.32  Aligned_cols=35  Identities=14%  Similarity=0.202  Sum_probs=32.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      -.+|+|+|||+|-+ |..+|..|+++|.+|+++.+.
T Consensus        47 ~~~k~VvIIGaGpA-Gl~aA~~l~~~G~~v~l~E~~   81 (233)
T d1djqa3          47 KNKDSVLIVGAGPS-GSEAARVLMESGYTVHLTDTA   81 (233)
T ss_dssp             SSCCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSS
T ss_pred             cCCceEEEEcccHH-HHHHHHHHHHhccceeeEeec
Confidence            47899999999997 999999999999999999865

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=94.19  E-value=0.015  Score=46.89  Aligned_cols=31  Identities=19%  Similarity=0.306  Sum_probs=28.8

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +|+|||+|-+ |-.+|..|+++|.+|+++.+.
T Consensus         2 ~V~IIGaG~a-GL~aA~~L~~~G~~V~vlE~~   32 (347)
T d2ivda1           2 NVAVVGGGIS-GLAVAHHLRSRGTDAVLLESS   32 (347)
T ss_dssp             CEEEECCBHH-HHHHHHHHHTTTCCEEEECSS
T ss_pred             eEEEECCCHH-HHHHHHHHHhCCCCEEEEecC
Confidence            6999999887 999999999999999999875

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.12  E-value=0.021  Score=49.99  Aligned_cols=32  Identities=34%  Similarity=0.537  Sum_probs=29.7

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEe
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVH  167 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~  167 (272)
                      ||||+|.|++|.+|..++..|+++|.+|++++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            79999999999999999999999999999884

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.12  E-value=0.026  Score=47.87  Aligned_cols=33  Identities=18%  Similarity=0.033  Sum_probs=30.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      |+++|.|++|.+|+.++..|+++|.+|+.+.|.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECC
Confidence            789999999999999999999999999988863

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=94.06  E-value=0.026  Score=42.42  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=32.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+||+|+|||.|.. +---|.+|.+...+|+++||..
T Consensus        25 ~~~k~V~VvGgGds-A~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          25 YRNQKVAVIGGGNT-AVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             GTTSEEEEECSSHH-HHHHHHHHTTTSSEEEEECSSS
T ss_pred             hCCCEEEEECCCHH-HHHHHHHHhhcCCcEEEEeecc
Confidence            58999999999998 8888888988888999999976

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=94.06  E-value=0.031  Score=47.88  Aligned_cols=31  Identities=26%  Similarity=0.348  Sum_probs=28.9

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      ||+|.|++|.+|+.++..|+++|.+|+++.+
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            6999999999999999999999999998854

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=94.00  E-value=0.04  Score=43.95  Aligned_cols=77  Identities=17%  Similarity=0.107  Sum_probs=49.7

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCCC----------------------CHhhhcCCCcEEEEecCCCcc
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK----------------------NPEQITSEADIVIAAAGVANL  192 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t~----------------------~l~~~l~~ADIVIsa~g~p~~  192 (272)
                      .-||.|+|++|.+|+-+.++|.++- .++..+.+.+.                      ...+..+++|+|+.|++.-..
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s   84 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTT   84 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSHH
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccchH
Confidence            4579999999999999999998774 46555543320                      112345789999999975321


Q ss_pred             --ccCCCcCCCcEEEEeeeCCC
Q 024116          193 --VRGSWLKPGAVVLDVGTCPV  212 (272)
Q Consensus       193 --i~~~~vk~g~vviDig~~~~  212 (272)
                        +-+...+.+.+|+|.+..+.
T Consensus        85 ~~~~~~l~~~~~~v~~~~~~~~  106 (183)
T d2cvoa1          85 QEIIKGLPQELKIVDLSADFRL  106 (183)
T ss_dssp             HHHHHTSCSSCEEEECSSTTTC
T ss_pred             HHHHHHHHhcCcccccchhhhc
Confidence              22334455555655554443

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.98  E-value=0.051  Score=40.12  Aligned_cols=36  Identities=28%  Similarity=0.326  Sum_probs=32.0

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      -..++++|||+|-+ |--+|..|++.|++|+++++..
T Consensus        20 ~~p~~i~IiG~G~i-g~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          20 NVPGKLGVIGAGVI-GLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             SCCSEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCCeEEEECCChH-HHHHHHHHHHcCCceEEEEeec
Confidence            35689999999775 9999999999999999999775

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=93.97  E-value=0.027  Score=46.31  Aligned_cols=34  Identities=15%  Similarity=0.136  Sum_probs=29.4

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      |-|+|.|+++-+|++++..|+++|++|.+++++.
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            4567779877779999999999999999998764

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.87  E-value=0.06  Score=44.16  Aligned_cols=53  Identities=23%  Similarity=0.256  Sum_probs=40.6

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHh--------------------CCC-EEEEEeCCC--------CCHhhhcCCCc
Q 024116          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQR--------------------HHA-TVSIVHALT--------KNPEQITSEAD  181 (272)
Q Consensus       131 ~~~l~gk~v~ViG~g~~vG~~la~~L~~--------------------~ga-~V~v~~~~t--------~~l~~~l~~AD  181 (272)
                      ..+++||+|+|||.|. |+.=+|..|++                    .|+ +|+++.|+.        +++++.....+
T Consensus        34 ~~~~~gk~VvVIGgGN-VAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~  112 (225)
T d1cjca1          34 APDLSCDTAVILGQGN-VALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPG  112 (225)
T ss_dssp             CCCTTSSEEEEESCSH-HHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTT
T ss_pred             CccccCceEEEECCch-hHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHhCCCCchhhhcccccCC
Confidence            3567899999999988 49999998887                    475 899999875        34566666656


Q ss_pred             EEE
Q 024116          182 IVI  184 (272)
Q Consensus       182 IVI  184 (272)
                      +-+
T Consensus       113 ~~~  115 (225)
T d1cjca1         113 TRP  115 (225)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            544

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=93.85  E-value=0.024  Score=45.32  Aligned_cols=37  Identities=22%  Similarity=0.372  Sum_probs=32.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++||+|+|||.|.. |-=++..+...++.++.+.+.
T Consensus        28 ~~~~gK~V~VvG~G~S-a~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSS-GIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             CCCBTCEEEEECCSHH-HHHHHHHHHHHBSEEEEEESS
T ss_pred             CCCCCCEEEEECCCcc-HHHHHHHHHhhhccccccccc
Confidence            4689999999999998 999999999999887777655

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.72  E-value=0.02  Score=42.69  Aligned_cols=35  Identities=29%  Similarity=0.405  Sum_probs=31.5

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      -.|+++|||+|- +|--+|..|.+.|++||++++..
T Consensus        24 ~p~~~viiG~G~-iglE~A~~~~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          24 IPKKLVVIGAGY-IGLEMGSVWGRIGSEVTVVEFAS   58 (123)
T ss_dssp             CCSEEEESCCSH-HHHHHHHHHHHHTCEEEEECSSS
T ss_pred             cCCeEEEEccch-HHHHHHHHHHhcCCeEEEEEEcc
Confidence            358999999977 59999999999999999999875

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=93.64  E-value=0.018  Score=45.33  Aligned_cols=34  Identities=9%  Similarity=0.281  Sum_probs=30.8

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++++|+|||.|.+ |...|..|++.|.+|+++++.
T Consensus         4 k~~dVvIIGGGpa-Gl~AA~~~ar~g~~v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSGPA-GYTAAVYAARANLQPVLITGM   37 (190)
T ss_dssp             EEEEEEEECCSHH-HHHHHHHHHTTTCCCEEECCS
T ss_pred             CCCcEEEECCCHH-HHHHHHHHHHcCCceEEEEee
Confidence            6789999999997 999999999999999999753

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=93.58  E-value=0.049  Score=45.93  Aligned_cols=51  Identities=29%  Similarity=0.321  Sum_probs=40.0

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------CHhhhcCCCcEEE-Eec
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------NPEQITSEADIVI-AAA  187 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------~l~~~l~~ADIVI-sa~  187 (272)
                      ...+||+|+|||+   +  |....+.+++++++|++++.+       .-++.+.+||+|| |++
T Consensus       118 ~~~~g~kV~vIG~---~--P~v~~l~~~~~~~~VlE~~p~~gd~p~~~~~~lLp~aD~viiTGs  176 (251)
T d2h1qa1         118 NEVKGKKVGVVGH---F--PHLESLLEPICDLSILEWSPEEGDYPLPASEFILPECDYVYITCA  176 (251)
T ss_dssp             TTTTTSEEEEESC---C--TTHHHHHTTTSEEEEEESSCCTTCEEGGGHHHHGGGCSEEEEETH
T ss_pred             cccCCCEEEEEec---c--hhHHHHHhcCCcEEEEeCCCCCCCCCchHHHHhhhcCCEEEEEec
Confidence            3457999999998   3  666778889999999998863       2467899999988 444

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=93.43  E-value=0.051  Score=41.96  Aligned_cols=54  Identities=13%  Similarity=0.121  Sum_probs=44.2

Q ss_pred             CccceEEEEcCC--cccHHHHHHHHHhCCCEEEEEeCC---------------------CCCHhhhcCCCcEEEEec
Q 024116          134 IMGKNAVVIGRS--NIVGLPTSLLLQRHHATVSIVHAL---------------------TKNPEQITSEADIVIAAA  187 (272)
Q Consensus       134 l~gk~v~ViG~g--~~vG~~la~~L~~~ga~V~v~~~~---------------------t~~l~~~l~~ADIVIsa~  187 (272)
                      ++|++|++||=+  .-|.+.++.+|...|++++++.-.                     +.++.+.+++||+|.+..
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~   78 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTR   78 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECC
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeec
Confidence            689999999984  336899999999999999998643                     246788999999988654

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=93.39  E-value=0.071  Score=42.06  Aligned_cols=56  Identities=25%  Similarity=0.271  Sum_probs=39.3

Q ss_pred             cceEEEEcCCcccHHHHHH--HHHhC----CCEEEEEeCC--------------------------CCCHhhhcCCCcEE
Q 024116          136 GKNAVVIGRSNIVGLPTSL--LLQRH----HATVSIVHAL--------------------------TKNPEQITSEADIV  183 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~--~L~~~----ga~V~v~~~~--------------------------t~~l~~~l~~ADIV  183 (272)
                      +-|+.|||+|. +|.+.+.  .|+..    +.++...+.+                          +.++++.++.||+|
T Consensus         2 ~mKI~iIGaGs-vg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~V   80 (171)
T d1obba1           2 SVKIGIIGAGS-AVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFV   80 (171)
T ss_dssp             CCEEEEETTTC-HHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             CcEEEEECCCH-HHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeE
Confidence            35899999977 4865332  23322    2488888754                          24778899999999


Q ss_pred             EEecCCCcc
Q 024116          184 IAAAGVANL  192 (272)
Q Consensus       184 Isa~g~p~~  192 (272)
                      |++++.+.+
T Consensus        81 v~~~~~g~~   89 (171)
T d1obba1          81 INTAMVGGH   89 (171)
T ss_dssp             EECCCTTHH
T ss_pred             eeecccccc
Confidence            999987653

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.37  E-value=0.078  Score=42.28  Aligned_cols=55  Identities=18%  Similarity=0.232  Sum_probs=45.4

Q ss_pred             CCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC-------------------------CCCHhhhcCCCcEEEEe
Q 024116          133 EIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL-------------------------TKNPEQITSEADIVIAA  186 (272)
Q Consensus       133 ~l~gk~v~ViG~g-~~vG~~la~~L~~~ga~V~v~~~~-------------------------t~~l~~~l~~ADIVIsa  186 (272)
                      +|+|.+|+.||-+ ..|.+.++..+...|+++++|+-.                         +.++++.++.||+|.+-
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~   81 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD   81 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence            5789999999964 457999999999999999999742                         24677899999998865


Q ss_pred             c
Q 024116          187 A  187 (272)
Q Consensus       187 ~  187 (272)
                      +
T Consensus        82 ~   82 (185)
T d1dxha2          82 V   82 (185)
T ss_dssp             C
T ss_pred             h
Confidence            4

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.32  E-value=0.034  Score=41.40  Aligned_cols=34  Identities=18%  Similarity=0.209  Sum_probs=30.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .-++++|||+|-+ |--+|..|.+.|++|+++.+.
T Consensus        19 ~P~~vvIIGgG~i-G~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVGASYV-ALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCCSEEEECCSHH-HHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCeEEEECCCcc-HHHHHHHHhhcCCeEEEEEec
Confidence            3579999999775 999999999999999999864

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.31  E-value=0.043  Score=43.66  Aligned_cols=52  Identities=31%  Similarity=0.406  Sum_probs=39.0

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------------------------CCHhhhcCCCcEEEE
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------------------KNPEQITSEADIVIA  185 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--------------------------------~~l~~~l~~ADIVIs  185 (272)
                      ||.|||.|- ||.|+|..|+ +|.+|+..+-+.                                .+......++|+++.
T Consensus         2 kI~ViGlG~-vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           2 KIAVAGSGY-VGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             EEEEECCSH-HHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             EEEEECCCh-hHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            789999977 6999998775 699999887431                                122344678999998


Q ss_pred             ecCCCc
Q 024116          186 AAGVAN  191 (272)
Q Consensus       186 a~g~p~  191 (272)
                      +|+.|.
T Consensus        80 ~vpt~~   85 (196)
T d1dlja2          80 ATPTNY   85 (196)
T ss_dssp             CCCCCE
T ss_pred             cCCccc
Confidence            888663

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.23  E-value=0.059  Score=41.80  Aligned_cols=36  Identities=17%  Similarity=0.178  Sum_probs=30.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t  170 (272)
                      --+++|+|||.|.+ |.=.|..+.+.|| +|++++|..
T Consensus        43 ~~~~kVvVIGGGdt-A~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          43 SIRGAVIVLGAGDT-AFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCCSEEEEECSSHH-HHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cCCCEEEEECCChh-HHHHHHHHHHcCCcceeEEEeCC
Confidence            35788999999996 9999999999997 688998865

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.14  E-value=0.06  Score=42.15  Aligned_cols=56  Identities=13%  Similarity=0.161  Sum_probs=46.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC-------------------------CCCHhhhcCCCcEEEEec
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-------------------------TKNPEQITSEADIVIAAA  187 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~-------------------------t~~l~~~l~~ADIVIsa~  187 (272)
                      +|+|++|++||-+..|...++.++...|++++++...                         +.++.+.++.||+|.+.+
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~   80 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT   80 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeec
Confidence            4789999999988888888888888889999988743                         246678999999999765


Q ss_pred             C
Q 024116          188 G  188 (272)
Q Consensus       188 g  188 (272)
                      -
T Consensus        81 ~   81 (170)
T d1otha2          81 W   81 (170)
T ss_dssp             S
T ss_pred             e
Confidence            3

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.03  E-value=0.039  Score=47.23  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=28.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHAL  169 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~  169 (272)
                      |+|+|||+|-+ |-.+|..|+++|.  +|+++.++
T Consensus         5 KrVaIIGaG~s-Gl~~A~~L~~~~~~~~v~vfEk~   38 (335)
T d2gv8a1           5 RKIAIIGAGPS-GLVTAKALLAEKAFDQVTLFERR   38 (335)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHTTTCCSEEEEECSS
T ss_pred             CeEEEECcCHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence            79999999987 9999999988774  89999876

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=93.01  E-value=0.082  Score=40.79  Aligned_cols=53  Identities=17%  Similarity=0.243  Sum_probs=40.5

Q ss_pred             CccceEEEEcCCcc--cHHHHHHHHHhCCCEEEEE-eCC------------------CCCHhhhcCCCcEEEEe
Q 024116          134 IMGKNAVVIGRSNI--VGLPTSLLLQRHHATVSIV-HAL------------------TKNPEQITSEADIVIAA  186 (272)
Q Consensus       134 l~gk~v~ViG~g~~--vG~~la~~L~~~ga~V~v~-~~~------------------t~~l~~~l~~ADIVIsa  186 (272)
                      |+|++|++||-+..  |.+.++..|...|++++++ ...                  +.++.+.+++||+|.+.
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~   74 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVT   74 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEE
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEe
Confidence            57999999997654  7999999999999876544 321                  14677899999988753

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.00  E-value=0.043  Score=46.67  Aligned_cols=33  Identities=15%  Similarity=0.096  Sum_probs=30.2

Q ss_pred             ceE-EEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          137 KNA-VVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       137 k~v-~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ||| +|.|++|.+|+.++..|.++|.+|+.+.|.
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~   34 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRR   34 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            688 899999999999999999999999988764

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.89  E-value=0.052  Score=41.09  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=31.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+||+|+|+|.|.. +---|.+|++.-.+|+++||..
T Consensus        32 frgk~V~VvGgGds-A~e~A~~L~~~a~~V~li~r~~   67 (130)
T d1vdca2          32 FRNKPLAVIGGGDS-AMEEANFLTKYGSKVYIIHRRD   67 (130)
T ss_dssp             GTTSEEEEECCSHH-HHHHHHHHTTTSSEEEEECSSS
T ss_pred             hCCCEEEEEcCchH-HHHHHHHHhCCCCcEEEEEecc
Confidence            58999999999998 7777778887778999999975

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=92.89  E-value=0.038  Score=45.33  Aligned_cols=32  Identities=25%  Similarity=0.353  Sum_probs=28.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ..|+|||+|-+ |-.+|..|+++|.+|+|+++.
T Consensus         5 ~DvvIIGaGi~-Gls~A~~La~~G~~V~vlE~~   36 (276)
T d1ryia1           5 YEAVVIGGGII-GSAIAYYLAKENKNTALFESG   36 (276)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECcCHH-HHHHHHHHHHCCCcEEEEeCC
Confidence            36999999775 999999999999999999875

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=92.86  E-value=0.016  Score=47.79  Aligned_cols=52  Identities=17%  Similarity=0.254  Sum_probs=37.2

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------C---HhhhcC--CCcEEEEecCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------N---PEQITS--EADIVIAAAGV  189 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~------~---l~~~l~--~ADIVIsa~g~  189 (272)
                      ||+|.|++|.+|+.++..|.++|..|.+..+...      +   +++.++  +.|+||...+.
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~~v~~~~~~~~~~~Dl~~~~~~~~~i~~~~~D~Vih~Aa~   64 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAH   64 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSEEEEECTTCSSSCCCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEECCCccccCcCCCHHHHHHHHHHcCCCEEEEeccc
Confidence            6999999999999999999998865554433321      1   234444  45999987763

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.77  E-value=0.047  Score=46.62  Aligned_cols=31  Identities=19%  Similarity=0.251  Sum_probs=29.4

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEe
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVH  167 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~  167 (272)
                      |||+|.|++|.+|..++..|+++|.+|+++.
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld   33 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVID   33 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEE
Confidence            7999999999999999999999999999885

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=92.77  E-value=0.039  Score=45.63  Aligned_cols=35  Identities=11%  Similarity=0.274  Sum_probs=31.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~  169 (272)
                      |++++|+|+|.|+. |-+++.+|++.|. ++++++..
T Consensus        28 L~~~~VliiG~Ggl-Gs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          28 LKDSRVLIVGLGGL-GCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHCEEEEECCSHH-HHHHHHHHHHHTCSEEEEECCC
T ss_pred             HhCCCEEEECCCHH-HHHHHHHHHHcCCCeEEEECCc
Confidence            68899999999995 9999999999996 89999754

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.66  E-value=0.035  Score=41.65  Aligned_cols=36  Identities=17%  Similarity=0.290  Sum_probs=31.9

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      -..++++|||+|-+ |--+|..|.+.|++|+++++..
T Consensus        24 ~~p~~vvIiGgG~I-G~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIGGGII-GLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEESCSHH-HHHHHHHHHHHTCEEEEECSSS
T ss_pred             ccCCeEEEECCCHH-HHHHHHHhhcCCCEEEEEEeec
Confidence            34689999999775 9999999999999999998864

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.59  E-value=0.041  Score=45.63  Aligned_cols=32  Identities=25%  Similarity=0.391  Sum_probs=28.8

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .|+|||+|-+ |-.+|..|+++|.+|+|+.+..
T Consensus         1 DViVIGaG~a-GL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           1 DVVVVGGGIS-GMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             SEEEECCBHH-HHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHH-HHHHHHHHHhCCCCEEEEecCC
Confidence            4899999887 9999999999999999998653

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.55  E-value=0.064  Score=43.09  Aligned_cols=32  Identities=28%  Similarity=0.371  Sum_probs=27.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhC--CCEEEEEeCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHAL  169 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~--ga~V~v~~~~  169 (272)
                      .||+|||+|-+ |-.+|..|.+.  |++|+|+++.
T Consensus         2 ~kv~iIGaGpa-Gl~aA~~L~~~~~~~~V~v~e~~   35 (230)
T d1cjca2           2 PQICVVGSGPA-GFYTAQHLLKHHSRAHVDIYEKQ   35 (230)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHHCSSCEEEEECSS
T ss_pred             CeEEEECccHH-HHHHHHHHHhcCCCCeEEEEeCC
Confidence            38999999998 99999988754  6799999765

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=92.55  E-value=0.065  Score=40.12  Aligned_cols=36  Identities=25%  Similarity=0.358  Sum_probs=31.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+||+|+|||.|.. +---|.+|.+...+|++++|..
T Consensus        28 ~~gk~V~VvGgG~s-A~~~A~~L~~~a~~V~li~r~~   63 (126)
T d1fl2a2          28 FKGKRVAVIGGGNS-GVEAAIDLAGIVEHVTLLEFAP   63 (126)
T ss_dssp             GBTCEEEEECCSHH-HHHHHHHHHTTBSEEEEECSSS
T ss_pred             cCCceEEEEeCCHH-HHHHHHhhhccCCceEEEeccc
Confidence            68999999999997 7777778888877999999875

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=92.47  E-value=0.06  Score=41.75  Aligned_cols=54  Identities=17%  Similarity=0.188  Sum_probs=43.3

Q ss_pred             CccceEEEEcC--CcccHHHHHHHHHhCCCEEEEEeCCC-----------CCHhhhcCCCcEEEEec
Q 024116          134 IMGKNAVVIGR--SNIVGLPTSLLLQRHHATVSIVHALT-----------KNPEQITSEADIVIAAA  187 (272)
Q Consensus       134 l~gk~v~ViG~--g~~vG~~la~~L~~~ga~V~v~~~~t-----------~~l~~~l~~ADIVIsa~  187 (272)
                      ++|.+++++|-  ++-|.+.++.++...|++++++.-..           .++.+.++.||+|.+..
T Consensus         1 F~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~~~~~~~~~~~~ea~~~aDviy~~r   67 (151)
T d2at2a2           1 FKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLLR   67 (151)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhccccceeEEEechhccccCceeeeeE
Confidence            47999999997  33369999999999999998886432           46778999999988654

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.46  E-value=0.061  Score=43.48  Aligned_cols=32  Identities=19%  Similarity=0.347  Sum_probs=28.8

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT  170 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t  170 (272)
                      +|+|||+|-+ |-.+|..|.+.|. +|+|+++..
T Consensus         3 ~V~IvGaG~a-Gl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGAGIG-GLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECcCHH-HHHHHHHHHhCCCCeEEEEeCCC
Confidence            7999999886 9999999999995 999998764

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=92.39  E-value=0.11  Score=44.11  Aligned_cols=52  Identities=15%  Similarity=0.217  Sum_probs=40.4

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC----------------------CC-HhhhcCCCcEEEEecCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT----------------------KN-PEQITSEADIVIAAAGV  189 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t----------------------~~-l~~~l~~ADIVIsa~g~  189 (272)
                      ||+|.|++|.+|+.++..|+++| .+|+.+++.+                      .+ .+...+++|+||-..+.
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~   77 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI   77 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCcccccccc
Confidence            79999999999999999999998 5888875532                      11 12367789999976663

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=92.38  E-value=0.057  Score=46.73  Aligned_cols=32  Identities=19%  Similarity=0.120  Sum_probs=29.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      |.|+|.|++|.+|+.++..|+++|.+|+.+.|
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r   33 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKR   33 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            78889999999999999999999999998876

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.35  E-value=0.09  Score=42.13  Aligned_cols=64  Identities=22%  Similarity=0.231  Sum_probs=43.7

Q ss_pred             HHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHhh----hc--C
Q 024116          125 ELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPEQ----IT--S  178 (272)
Q Consensus       125 ~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t-------------------~~l~~----~l--~  178 (272)
                      ..++..++ -.|.+|+|+|+|. +|..+++++...|+ .|+++.+..                   .++.+    .+  .
T Consensus        16 ~a~~~a~v-~~G~tVlV~GaG~-vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~   93 (195)
T d1kola2          16 HGAVTAGV-GPGSTVYVAGAGP-VGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEP   93 (195)
T ss_dssp             HHHHHTTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSS
T ss_pred             HHHHHhCC-CCCCEEEEECcCH-HHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCC
Confidence            34555444 3699999999987 59888888888887 677776531                   22222    22  2


Q ss_pred             CCcEEEEecCCC
Q 024116          179 EADIVIAAAGVA  190 (272)
Q Consensus       179 ~ADIVIsa~g~p  190 (272)
                      .+|++|.++|.+
T Consensus        94 g~D~vid~vG~~  105 (195)
T d1kola2          94 EVDCAVDAVGFE  105 (195)
T ss_dssp             CEEEEEECCCTT
T ss_pred             CcEEEEECcccc
Confidence            479999999854

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.29  E-value=0.083  Score=40.22  Aligned_cols=51  Identities=18%  Similarity=0.283  Sum_probs=39.4

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------------------C---H-hhhcCCCcEEEEecCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------------N---P-EQITSEADIVIAAAGV  189 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~----------------------~---l-~~~l~~ADIVIsa~g~  189 (272)
                      +++|+|.|.. |+.++..|.++|..|++.....+                      +   | +..+.+||.||.+++.
T Consensus         5 HiII~G~g~~-g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~   81 (153)
T d1id1a_           5 HFIVCGHSIL-AINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN   81 (153)
T ss_dssp             CEEEECCSHH-HHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred             EEEEECCCHH-HHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEcccc
Confidence            5899999885 99999999999998888865421                      0   1 2346778888888875

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.26  E-value=0.062  Score=44.35  Aligned_cols=36  Identities=17%  Similarity=0.123  Sum_probs=30.2

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT  170 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~t  170 (272)
                      +.|+|+|-|++.=+|+++++.|+++|+  .|..+.|+.
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~   39 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDV   39 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSG
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCH
Confidence            468999999888889999999999997  577777653

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.26  E-value=0.064  Score=45.71  Aligned_cols=35  Identities=14%  Similarity=0.078  Sum_probs=31.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      .+-|+++|.|++|.+|+.++..|.++|.+|+.+.+
T Consensus        14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          14 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            35589999999999999999999999999998864

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.21  E-value=0.049  Score=43.54  Aligned_cols=32  Identities=13%  Similarity=0.195  Sum_probs=28.4

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC-------CEEEEEeCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHH-------ATVSIVHAL  169 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~g-------a~V~v~~~~  169 (272)
                      ++|+|||+|-+ |-.+|..|+++|       ..|+|+++.
T Consensus         3 ~~VaVIGaGpa-GL~aA~~L~~~G~~~~~~~~~V~v~E~~   41 (239)
T d1lqta2           3 YYIAIVGSGPS-AFFAAASLLKAADTTEDLDMAVDMLEML   41 (239)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHHHHHHSTTCCEEEEEEESS
T ss_pred             cEEEEECcCHH-HHHHHHHHHHcCCccccCCCceEEEecC
Confidence            58999999998 999999999887       479999864

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=92.15  E-value=0.063  Score=44.60  Aligned_cols=31  Identities=19%  Similarity=0.147  Sum_probs=25.5

Q ss_pred             EEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          139 AVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       139 v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++|-|+++=+|++++..|+++|++|.++.++
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga~V~i~~~~   35 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHR   35 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            3455776657999999999999999998665

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=92.15  E-value=0.084  Score=41.39  Aligned_cols=94  Identities=15%  Similarity=0.125  Sum_probs=56.8

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCCC---------------------H
Q 024116          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTKN---------------------P  173 (272)
Q Consensus       116 ~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t~~---------------------l  173 (272)
                      +.|.-...+..+.+..---.|.+|+|+|+|+ +|..+++.+...|+ +|+++.++.+.                     .
T Consensus         8 lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGg-vGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~   86 (174)
T d1p0fa2           8 IGCGFATGYGAAVNTAKVTPGSTCAVFGLGG-VGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPI   86 (174)
T ss_dssp             GGTHHHHHHHHHHTTTCCCTTCEEEEECCSH-HHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCH
T ss_pred             hhhHHHHHHHHHHHhhCCCCCCEEEEECCCc-hhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHH
Confidence            3453333444443333345799999999988 59999999999996 68887654311                     1


Q ss_pred             hhhc-----CCCcEEEEecCCCccc--cCCCcCC-CcEEEEeeeC
Q 024116          174 EQIT-----SEADIVIAAAGVANLV--RGSWLKP-GAVVLDVGTC  210 (272)
Q Consensus       174 ~~~l-----~~ADIVIsa~g~p~~i--~~~~vk~-g~vviDig~~  210 (272)
                      .+..     +-+|++|.++|.+..+  ....+++ +-.++=+|..
T Consensus        87 ~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~  131 (174)
T d1p0fa2          87 YEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLA  131 (174)
T ss_dssp             HHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCC
T ss_pred             HHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEe
Confidence            1111     3479999999877643  2223433 2344445543

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=91.96  E-value=0.14  Score=42.36  Aligned_cols=71  Identities=21%  Similarity=0.175  Sum_probs=51.5

Q ss_pred             Ccc-ceEEEEcCCcccHHHHHHHHHh------CCCEEEEEeCCC-C------------------CHhhhcCCCcEEEEec
Q 024116          134 IMG-KNAVVIGRSNIVGLPTSLLLQR------HHATVSIVHALT-K------------------NPEQITSEADIVIAAA  187 (272)
Q Consensus       134 l~g-k~v~ViG~g~~vG~~la~~L~~------~ga~V~v~~~~t-~------------------~l~~~l~~ADIVIsa~  187 (272)
                      ++| |+|.|||+|.- |++=|..|..      .|..|+|--|.. .                  +..|.++.||||.-.+
T Consensus        41 ~kg~KkIaViGYGsQ-G~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLl  119 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQ-APAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLI  119 (226)
T ss_dssp             TTTCSEEEEECCSSH-HHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECS
T ss_pred             hcCCCEEEEEEeccH-HHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEec
Confidence            688 99999999886 9999999998      446788875542 1                  2458889999999888


Q ss_pred             CC---Ccccc--CCCcCCCcEEE
Q 024116          188 GV---ANLVR--GSWLKPGAVVL  205 (272)
Q Consensus       188 g~---p~~i~--~~~vk~g~vvi  205 (272)
                      +-   +...+  ...+++|+.+.
T Consensus       120 PDe~Q~~vy~~I~p~Lk~G~~L~  142 (226)
T d1qmga2         120 SDSAQADNYEKVFSHMKPNSILG  142 (226)
T ss_dssp             CHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             chHHHHHHHHHHHHhcCCCceee
Confidence            72   22222  12578886654

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.91  E-value=0.056  Score=41.53  Aligned_cols=32  Identities=19%  Similarity=0.216  Sum_probs=27.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEe
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVH  167 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~  167 (272)
                      ++++|+|||+|-+ |--+|..|.+.|++|+++.
T Consensus         2 ~~~~VvIIGgG~~-G~e~A~~l~~~g~~v~v~~   33 (185)
T d1q1ra1           2 ANDNVVIVGTGLA-GVEVAFGLRASGWEGNIRL   33 (185)
T ss_dssp             CSCEEEEECCSHH-HHHHHHHHHHTTCCSEEEE
T ss_pred             CCCCEEEECCcHH-HHHHHHHHHHcCCceEEEE
Confidence            4789999999886 9999999999998766653

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=91.87  E-value=0.052  Score=45.53  Aligned_cols=53  Identities=15%  Similarity=0.199  Sum_probs=39.2

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------CHhhhc--CCCcEEEEecC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------NPEQIT--SEADIVIAAAG  188 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~-------~l~~~l--~~ADIVIsa~g  188 (272)
                      -|||+|.|++|.+|+.++..|+++|..|.++.+..+       .+.+.+  ...|.|+-+.+
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~a~   63 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAA   63 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchhccccCHHHHHHHHhhcCCCEEEEcch
Confidence            379999999999999999999999998877644321       122333  34688886664

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=91.76  E-value=0.082  Score=44.23  Aligned_cols=31  Identities=6%  Similarity=0.166  Sum_probs=28.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEe
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVH  167 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~  167 (272)
                      .||+|.|++|.+|+.++..|+++|.+|+.++
T Consensus         1 ~KILVTGatGfIGs~lv~~Ll~~g~~V~~id   31 (338)
T d1orra_           1 AKLLITGGCGFLGSNLASFALSQGIDLIVFD   31 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEE
Confidence            3799999999999999999999999999875

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.64  E-value=0.026  Score=47.47  Aligned_cols=35  Identities=20%  Similarity=0.220  Sum_probs=28.5

Q ss_pred             ccceEEEE-cCCcccHHHHHHHHHhC-CCEEEEEeCC
Q 024116          135 MGKNAVVI-GRSNIVGLPTSLLLQRH-HATVSIVHAL  169 (272)
Q Consensus       135 ~gk~v~Vi-G~g~~vG~~la~~L~~~-ga~V~v~~~~  169 (272)
                      +||+|+|| |++.=+|+.++..|+++ |++|+++.|+
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~   37 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARD   37 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECC
Confidence            48999766 55444699999999876 8999999987

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.57  E-value=0.056  Score=45.90  Aligned_cols=33  Identities=12%  Similarity=0.238  Sum_probs=29.7

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+++|||+|-+ |-.+|..|+++|.+|+|+.++.
T Consensus         2 ~dv~IIGaG~s-Gl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           2 YDYIIVGSGLF-GAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             EEEEEECCSHH-HHHHHHHHGGGTCCEEEECSSS
T ss_pred             ccEEEECCcHH-HHHHHHHHHhCCCcEEEEECCC
Confidence            36899999987 9999999999999999998764

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.48  E-value=0.088  Score=44.98  Aligned_cols=32  Identities=19%  Similarity=0.220  Sum_probs=29.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      |.|+|.|++|.+|+.++..|+++|.+|+++.+
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~   33 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence            67889999999999999999999999998853

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.28  E-value=0.058  Score=42.51  Aligned_cols=33  Identities=6%  Similarity=0.148  Sum_probs=29.9

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      +.++|+|||+|.+ |-.+|..|++.|.+|+++.+
T Consensus         4 ~~~~VvIIGgGpa-Gl~aA~~~ar~g~~v~vie~   36 (192)
T d1vdca1           4 HNTRLCIVGSGPA-AHTAAIYAARAELKPLLFEG   36 (192)
T ss_dssp             EEEEEEEECCSHH-HHHHHHHHHHTTCCCEEECC
T ss_pred             ccceEEEECCCHH-HHHHHHHHHHcCCcEEEEEe
Confidence            5789999999997 99999999999999999864

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.25  E-value=0.14  Score=40.83  Aligned_cols=121  Identities=18%  Similarity=0.200  Sum_probs=68.6

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC---------------------------------CCHhhhcCCCcEE
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT---------------------------------KNPEQITSEADIV  183 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t---------------------------------~~l~~~l~~ADIV  183 (272)
                      ||.|.|.|.+ ||.+++.+.++. .+|..++...                                 .++.+...++|+|
T Consensus         3 KVaINGfGRI-GR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiV   81 (178)
T d1b7go1           3 NVAVNGYGTI-GKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (178)
T ss_dssp             EEEEECCSHH-HHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             EEEEECCCHH-HHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEE
Confidence            6899999996 999999998775 5766665432                                 1334555689999


Q ss_pred             EEecCCCccc--cCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhhhhce--Eec---cCCCcccHHHHHH
Q 024116          184 IAAAGVANLV--RGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLAS--VIT---PVPGGVGPMTVAM  256 (272)
Q Consensus       184 Isa~g~p~~i--~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~--~~t---pvpGGvGp~T~am  256 (272)
                      |-+||.-.-.  -+.+++.|.-+|=.+..+.+   ..    .-.++-.|+.++...+..  .++   =..+++.|+-++|
T Consensus        82 iecTG~f~~~e~a~~hl~~G~KvIi~~~~~~~---~~----~~t~V~GvN~~~~~~~~~~~vVSnAscttn~lap~~~~~  154 (178)
T d1b7go1          82 VDTTPNGVGAQYKPIYLQLQRNAIFQGGEKAE---VA----DISFSALCNYNEALGKKYIRVVSESIVVPENIDAIRASM  154 (178)
T ss_dssp             EECCSTTHHHHHHHHHHHTTCEEEECTTSCGG---GS----SCEECHHHHHHHHTTCSEEEECCTTTHHHHHHHHHHHHT
T ss_pred             EECCCCcCCHHHHHHHHHcCCEEEEECCCCcc---cc----CCeEEeCcchHHhcCCCCCEEEeCCcccccccHHHHHHH
Confidence            9999963211  12244556544434433222   00    113555666555322111  111   1236777776666


Q ss_pred             HHHHHHHHHH
Q 024116          257 LLSNTLDSAK  266 (272)
Q Consensus       257 L~~n~v~a~~  266 (272)
                      .+.+.....|
T Consensus       155 ~~~~~~~~~k  164 (178)
T d1b7go1         155 KLMSAEDSMR  164 (178)
T ss_dssp             TCSCHHHHHH
T ss_pred             Hhhcccccee
Confidence            6655554444

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=91.08  E-value=0.17  Score=40.07  Aligned_cols=55  Identities=15%  Similarity=0.095  Sum_probs=44.1

Q ss_pred             CCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC-------------------------CCCHhhhcCCCcEEEEe
Q 024116          133 EIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL-------------------------TKNPEQITSEADIVIAA  186 (272)
Q Consensus       133 ~l~gk~v~ViG~g-~~vG~~la~~L~~~ga~V~v~~~~-------------------------t~~l~~~l~~ADIVIsa  186 (272)
                      .++|.+++.+|-+ ..|...++.++...|+++++|.-.                         +.++.+.++.||+|.+.
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~   81 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD   81 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence            4788999999965 457899999999999999998642                         24677899999999865


Q ss_pred             c
Q 024116          187 A  187 (272)
Q Consensus       187 ~  187 (272)
                      +
T Consensus        82 ~   82 (183)
T d1duvg2          82 V   82 (183)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=91.05  E-value=0.075  Score=44.30  Aligned_cols=31  Identities=16%  Similarity=0.193  Sum_probs=27.5

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~  169 (272)
                      +|+|||+|-+ |-.+|..|+++|. +|+++.+.
T Consensus         3 dViIIGaGi~-G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIV-GTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHH-HHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCHH-HHHHHHHHHHcCCCcEEEEeCC
Confidence            6999999775 9999999999995 79999875

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.00  E-value=0.074  Score=44.13  Aligned_cols=33  Identities=21%  Similarity=0.204  Sum_probs=29.4

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +++|-|++.-+|+++|..|+++|++|.++.|+.
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~   34 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESF   34 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGG
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            678999888889999999999999999987753

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=90.88  E-value=0.086  Score=43.54  Aligned_cols=33  Identities=15%  Similarity=0.250  Sum_probs=26.6

Q ss_pred             ceE-EEEcCCcccHHHHHHHHHhCCCE-------EEEEeCC
Q 024116          137 KNA-VVIGRSNIVGLPTSLLLQRHHAT-------VSIVHAL  169 (272)
Q Consensus       137 k~v-~ViG~g~~vG~~la~~L~~~ga~-------V~v~~~~  169 (272)
                      |+| +|-|++.=+|++++..|+++|++       |.++.|+
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~   41 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRT   41 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESC
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCC
Confidence            675 45588777799999999999986       7778775

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.81  E-value=0.066  Score=44.29  Aligned_cols=32  Identities=25%  Similarity=0.311  Sum_probs=29.0

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      +|+|||+|-+ |-.+|..|.+.|.+|+|+.+..
T Consensus         4 ~V~IvGaGp~-Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPS-GLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECCSHH-HHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECcCHH-HHHHHHHHHHCCCCEEEEeCCC
Confidence            7999999875 9999999999999999998763

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=90.72  E-value=0.14  Score=42.27  Aligned_cols=30  Identities=30%  Similarity=0.303  Sum_probs=25.2

Q ss_pred             EEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          139 AVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       139 v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      |+|-|++.-+|++++..|+++|++|.+..+
T Consensus         4 ~lITGas~GIG~a~a~~la~~Ga~V~i~~~   33 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGKAGCKVLVNYA   33 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            566687777899999999999999988644

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.61  E-value=0.076  Score=43.53  Aligned_cols=32  Identities=19%  Similarity=0.267  Sum_probs=28.7

Q ss_pred             EEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          139 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       139 v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ++|-|+|+-+|++++..|+++|++|.++.|+.
T Consensus         4 AlVTGas~GIG~aia~~la~~G~~Vvi~~r~~   35 (266)
T d1mxha_           4 AVITGGARRIGHSIAVRLHQQGFRVVVHYRHS   35 (266)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            57888888789999999999999999999874

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.51  E-value=0.41  Score=35.03  Aligned_cols=53  Identities=13%  Similarity=0.138  Sum_probs=40.7

Q ss_pred             ceEEEEcCCc---ccHHHHHHHHHhCCCEEEEEeCCC---------CCHhhhcCCCcEEEEecCC
Q 024116          137 KNAVVIGRSN---IVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       137 k~v~ViG~g~---~vG~~la~~L~~~ga~V~v~~~~t---------~~l~~~l~~ADIVIsa~g~  189 (272)
                      |++.|||+|.   -.|.-+...|++.|.+|+-+|.+.         +++.+.-..-|+++..++.
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~lp~~~D~vvi~vp~   66 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPP   66 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSCH
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccccCccccccchhccccceEEEEEeCH
Confidence            7899999763   357888889999999999998764         3555655667888877764

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=90.49  E-value=0.15  Score=39.64  Aligned_cols=70  Identities=14%  Similarity=0.303  Sum_probs=47.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhC-CCE-EEEEeCCC-----------CCHhhhcCCCcEEEEecCC-Ccc-ccCCCcCCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRH-HAT-VSIVHALT-----------KNPEQITSEADIVIAAAGV-ANL-VRGSWLKPG  201 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~-ga~-V~v~~~~t-----------~~l~~~l~~ADIVIsa~g~-p~~-i~~~~vk~g  201 (272)
                      -|+.|+|.|.+ |+..+..|.+. +.+ |.+++++.           .+..+...+.|+|+.+|+. .|+ +-...++.|
T Consensus         4 irvgiiG~G~i-g~~~~~~l~~~~~~elvav~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~~a~~aL~aG   82 (170)
T d1f06a1           4 IRVAIVGYGNL-GRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATDIPEQAPKFAQF   82 (170)
T ss_dssp             EEEEEECCSHH-HHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHHHHHTTT
T ss_pred             ceEEEECChHH-HHHHHHHHHhCCCcEEEEEEecccccccccccccchhhhhhccccceEEEeCCCcccHHHHHHHHHCC
Confidence            47999999885 99999888765 355 44565543           2455677889999999884 333 333346778


Q ss_pred             cEEEEe
Q 024116          202 AVVLDV  207 (272)
Q Consensus       202 ~vviDi  207 (272)
                      .-||+.
T Consensus        83 ~~vv~~   88 (170)
T d1f06a1          83 ACTVDT   88 (170)
T ss_dssp             SEEECC
T ss_pred             CcEEEe
Confidence            766653

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=90.49  E-value=0.05  Score=46.59  Aligned_cols=30  Identities=23%  Similarity=0.401  Sum_probs=26.6

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEE
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIV  166 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~  166 (272)
                      |+|+|.|++|.||+.++..|+++|..|.++
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~   32 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVT   32 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEE
Confidence            799999999999999999999999765544

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=90.48  E-value=0.1  Score=42.91  Aligned_cols=32  Identities=19%  Similarity=0.448  Sum_probs=28.7

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ..|+|||+|-+ |-.+|..|+++|.+|+++.+.
T Consensus         4 yDvvIIGaGi~-Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           4 FDVIVVGAGSM-GMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECcCHH-HHHHHHHHHHCCCcEEEEeCC
Confidence            35899999775 999999999999999999875

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=90.44  E-value=0.094  Score=42.89  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=29.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      .+|+|||+|-+ |-.+|..|+++|.+|+++++..
T Consensus         5 ~DViIIGaG~a-Gl~aA~~la~~G~~V~vlEk~~   37 (253)
T d2gqfa1           5 SENIIIGAGAA-GLFCAAQLAKLGKSVTVFDNGK   37 (253)
T ss_dssp             CSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSS
T ss_pred             CcEEEECcCHH-HHHHHHHHHHCCCcEEEEecCC
Confidence            46999999987 9999999999999999998764

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.44  E-value=0.18  Score=38.25  Aligned_cols=37  Identities=19%  Similarity=0.233  Sum_probs=30.7

Q ss_pred             CCccceEEEE--cCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          133 EIMGKNAVVI--GRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       133 ~l~gk~v~Vi--G~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      ..-++.++|+  |.|. +|--+|..|+++|++||++.+..
T Consensus        36 ~~~~~~vvi~d~ggg~-ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          36 KKIGKRVVILNADTYF-MAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             SCCCSEEEEEECCCSS-HHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cccCCceEEEecCCCh-HHHHHHHHHHHcCCeEEEEecCC
Confidence            3457788887  6666 59999999999999999998764

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.40  E-value=0.13  Score=42.33  Aligned_cols=36  Identities=11%  Similarity=0.075  Sum_probs=30.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHH---hCCCEEEEEeCCCCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQ---RHHATVSIVHALTKN  172 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~---~~ga~V~v~~~~t~~  172 (272)
                      |+|+|-|++.=+|+++++.|+   ++|++|+++.|+.+.
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~   41 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQ   41 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            789999997778999999886   578999999987543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=90.32  E-value=0.096  Score=42.18  Aligned_cols=31  Identities=23%  Similarity=0.290  Sum_probs=28.2

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .|+|||+|-+ |-.+|..|+++|.+|+++++.
T Consensus         4 DViIIGaG~a-Gl~aA~~la~~G~~V~liEk~   34 (251)
T d2i0za1           4 DVIVIGGGPS-GLMAAIGAAEEGANVLLLDKG   34 (251)
T ss_dssp             SEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHH-HHHHHHHHHHCCCcEEEEeCC
Confidence            5899999886 999999999999999999864

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.13  E-value=0.11  Score=46.90  Aligned_cols=36  Identities=17%  Similarity=0.157  Sum_probs=31.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~t  170 (272)
                      ++++||+|||+|+. |-.++..|+..|. ++++++..+
T Consensus        35 l~~~kVlvvG~Ggl-G~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          35 LDTCKVLVIGAGGL-GCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             HHHCCEEEECSSTT-HHHHHHHHHTTTCCCEEEECCCB
T ss_pred             HhcCeEEEECCCHH-HHHHHHHHHHcCCCeEEEEECCC
Confidence            46789999999995 9999999999996 899997654

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=89.63  E-value=0.49  Score=34.15  Aligned_cols=67  Identities=15%  Similarity=0.122  Sum_probs=46.8

Q ss_pred             HHHHHHHHhCCCCccceEEEEc----------CCcccHHHHHHHHHhCCCEEEEEeCC------------CCCHhhhcCC
Q 024116          122 GCIELLIRSGVEIMGKNAVVIG----------RSNIVGLPTSLLLQRHHATVSIVHAL------------TKNPEQITSE  179 (272)
Q Consensus       122 g~~~~l~~~~~~l~gk~v~ViG----------~g~~vG~~la~~L~~~ga~V~v~~~~------------t~~l~~~l~~  179 (272)
                      -+++.|++...  ..|+|.|+|          |.- -...++..|.+.|++|.+++-.            ..++.+.+..
T Consensus         3 ~ii~~l~~~~~--~~k~I~ilGl~fK~n~dD~R~S-p~i~ii~~L~~~g~~v~iyDP~v~~~~~~~~~~~~~~l~~~~~~   79 (108)
T d1dlja3           3 QIINVLKEQES--PVKVVGVYRLIMKSNSDNFRES-AIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQ   79 (108)
T ss_dssp             HHHHHHTTSCC--SSCEEEEECCCSSTTCSCCTTC-HHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHH
T ss_pred             HHHHHHHhccC--CCCEEEEEEEEECCCCcchhhh-hHHHHHHHHhccccceeeecCCcChhHhccCCEEEeCHHHHHhh
Confidence            34556654433  346899999          423 3677888999999999988632            1467888899


Q ss_pred             CcEEEEecCCCc
Q 024116          180 ADIVIAAAGVAN  191 (272)
Q Consensus       180 ADIVIsa~g~p~  191 (272)
                      +|+||..+....
T Consensus        80 sDiII~~~~~~~   91 (108)
T d1dlja3          80 ANIIVTNRYDNE   91 (108)
T ss_dssp             CSEEECSSCCGG
T ss_pred             CCEEEEcCCchH
Confidence            999887665543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=89.26  E-value=0.15  Score=40.27  Aligned_cols=32  Identities=13%  Similarity=0.133  Sum_probs=28.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ..++|||+|-+ |..+|..+++.|.+|+++.+.
T Consensus         3 yDvvVIG~G~a-G~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           3 YDYIAIGGGSG-GIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHTTTCCEEEEESS
T ss_pred             CCEEEECCCHH-HHHHHHHHHHCCCEEEEEecc
Confidence            46899999987 999999999999999999764

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=89.14  E-value=0.13  Score=42.85  Aligned_cols=33  Identities=18%  Similarity=0.318  Sum_probs=29.7

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .-.|+|||+|-+ |-.+|..|+++|++|+++.+.
T Consensus        16 ~~DVlVIG~G~a-Gl~aA~~la~~G~~V~lvEK~   48 (308)
T d1y0pa2          16 TVDVVVVGSGGA-GFSAAISATDSGAKVILIEKE   48 (308)
T ss_dssp             ECSEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             cCCEEEECcCHH-HHHHHHHHHHCCCcEEEEecC
Confidence            457999999887 999999999999999999864

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=89.12  E-value=0.16  Score=38.89  Aligned_cols=31  Identities=10%  Similarity=0.296  Sum_probs=28.1

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .|+|||+|-+ |-.+|..+.+.|.+|+++++.
T Consensus         3 DViIIGgGpa-Gl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPA-GAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHH-HHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHH-HHHHHHHHHHcCCeEEEEEEe
Confidence            6899999987 999999999999999999863

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.01  E-value=0.59  Score=35.34  Aligned_cols=55  Identities=16%  Similarity=0.023  Sum_probs=42.9

Q ss_pred             ccceEEEEcCC---cccHHHHHHHHHhCCCEEEEEeCCC---------CCHhhhcCCCcEEEEecCC
Q 024116          135 MGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       135 ~gk~v~ViG~g---~~vG~~la~~L~~~ga~V~v~~~~t---------~~l~~~l~~ADIVIsa~g~  189 (272)
                      +-|+++|||+|   +-.|.-++..|.+.|.+|+-+|.+.         +++.+.-..-|+++..++.
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~i~vp~   84 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKP   84 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCH
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccccCccceEEEEEeCH
Confidence            45899999987   3468889999999999999999764         3555655667888777764

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=88.99  E-value=0.17  Score=43.06  Aligned_cols=34  Identities=18%  Similarity=0.238  Sum_probs=30.6

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +..+|+|||+|-+ |..+|..|.++|.+|+|+.+.
T Consensus         6 ~~~dV~IIGAG~s-Gl~~a~~L~~~G~~v~i~Ek~   39 (298)
T d1w4xa1           6 EEVDVLVVGAGFS-GLYALYRLRELGRSVHVIETA   39 (298)
T ss_dssp             SEEEEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCEEEECccHH-HHHHHHHHHhCCCCEEEEEcC
Confidence            5678999999887 999999999999999999764

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.47  E-value=0.4  Score=40.54  Aligned_cols=46  Identities=15%  Similarity=0.142  Sum_probs=34.0

Q ss_pred             HHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024116          121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (272)
Q Consensus       121 ~g~~~~l~~~~~~l~gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~  169 (272)
                      .+..+.+++..-.++||+|+-||.|.  | .++.++++.|| .|+.+...
T Consensus        21 ~~y~~ai~~~~~~~~~~~VLDiGcG~--G-~lsl~aa~~Ga~~V~aid~s   67 (311)
T d2fyta1          21 ESYRDFIYQNPHIFKDKVVLDVGCGT--G-ILSMFAAKAGAKKVLGVDQS   67 (311)
T ss_dssp             HHHHHHHHHCGGGTTTCEEEEETCTT--S-HHHHHHHHTTCSEEEEEESS
T ss_pred             HHHHHHHHhccccCCcCEEEEECCCC--C-HHHHHHHHcCCCEEEEEeCH
Confidence            44556666554557999999999974  6 46778888997 78888654

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.46  E-value=0.14  Score=43.30  Aligned_cols=30  Identities=27%  Similarity=0.324  Sum_probs=23.8

Q ss_pred             ceEEEE-cCCcccHHHHHHHHHhCCCEEEEE
Q 024116          137 KNAVVI-GRSNIVGLPTSLLLQRHHATVSIV  166 (272)
Q Consensus       137 k~v~Vi-G~g~~vG~~la~~L~~~ga~V~v~  166 (272)
                      |||++| |++.=+|+++|..|+++|++|..+
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v   32 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKV   32 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEE
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEE
Confidence            677666 876667999999999999875544

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.42  E-value=0.57  Score=34.89  Aligned_cols=56  Identities=25%  Similarity=0.236  Sum_probs=42.1

Q ss_pred             CccceEEEEcCC---cccHHHHHHHHHhCC-CEEEEEeCCC---------CCHhhhcCCCcEEEEecCC
Q 024116          134 IMGKNAVVIGRS---NIVGLPTSLLLQRHH-ATVSIVHALT---------KNPEQITSEADIVIAAAGV  189 (272)
Q Consensus       134 l~gk~v~ViG~g---~~vG~~la~~L~~~g-a~V~v~~~~t---------~~l~~~l~~ADIVIsa~g~  189 (272)
                      ++-|+|+|||+|   +..|..+.+.|.+.| .+|+-+|.+.         +++.+.=...|+++.+++.
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~G~~~y~sl~dlp~~vDlvvi~vp~   74 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIVVPK   74 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEECSCH
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccCCeEeecchhhcCCCCceEEEecCh
Confidence            567999999987   556778888887766 4899999764         3455555567888877764

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=88.38  E-value=0.23  Score=39.07  Aligned_cols=73  Identities=18%  Similarity=0.150  Sum_probs=46.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC----------------------------------CCHhhhcCCCc
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT----------------------------------KNPEQITSEAD  181 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t----------------------------------~~l~~~l~~AD  181 (272)
                      ++|.|-|.|.+ ||.+++.|..++ .+|..++...                                  .+......++|
T Consensus         2 ~~VgINGfGRI-GR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vD   80 (171)
T d1cf2o1           2 KAVAINGYGTV-GKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEAD   80 (171)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCS
T ss_pred             eEEEEEcCcHH-HHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCC
Confidence            57899999996 999999887776 4665554321                                  12234557899


Q ss_pred             EEEEecCCCccc--cCCCcCCCcEEEEeeeC
Q 024116          182 IVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (272)
Q Consensus       182 IVIsa~g~p~~i--~~~~vk~g~vviDig~~  210 (272)
                      +||-+||.-.-.  -..+++.|+-+|=.+.+
T Consensus        81 vViEcTG~f~~~~~~~~hl~~G~K~vi~~~~  111 (171)
T d1cf2o1          81 IVIDCTPEGIGAKNLKMYKEKGIKAIFQGGE  111 (171)
T ss_dssp             EEEECCSTTHHHHHHHHHHHTTCEEEECTTS
T ss_pred             EEEEccCCCCCHHHHHHHHHcCCCEEEECCC
Confidence            999999963211  12245566655555433

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=88.28  E-value=0.44  Score=36.52  Aligned_cols=55  Identities=11%  Similarity=0.134  Sum_probs=40.7

Q ss_pred             CccceEEEEcCCcc--cHHHHHHHHHhCC-CEEEEEeCC---------------------CCCHhhhcCCCcEEEEecC
Q 024116          134 IMGKNAVVIGRSNI--VGLPTSLLLQRHH-ATVSIVHAL---------------------TKNPEQITSEADIVIAAAG  188 (272)
Q Consensus       134 l~gk~v~ViG~g~~--vG~~la~~L~~~g-a~V~v~~~~---------------------t~~l~~~l~~ADIVIsa~g  188 (272)
                      ++|.+++.+|=+..  |.+.++..|...| ..+++|...                     +.++.+.+++||+|.+...
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~   80 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV   80 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCC
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeecc
Confidence            67899999997554  6888888888886 456676422                     3467889999999886543

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.17  E-value=0.39  Score=37.74  Aligned_cols=92  Identities=16%  Similarity=0.199  Sum_probs=57.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC----------------------------------CCHhhhcCCCc
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT----------------------------------KNPEQITSEAD  181 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~g-a~V~v~~~~t----------------------------------~~l~~~l~~AD  181 (272)
                      .||.|.|.|.+ ||.+++.+.++. .++.-++...                                  .++.+...++|
T Consensus         3 irIaINGfGRI-GR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD   81 (172)
T d2czca2           3 VKVGVNGYGTI-GKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVD   81 (172)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCS
T ss_pred             EEEEEECCCHH-HHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCC
Confidence            47999999996 999999888765 4655444211                                  13345567899


Q ss_pred             EEEEecCCCccc--cCCCcCCCcEEEEeeeCCCCCCCCCCCCCCceEecccchhhhh
Q 024116          182 IVIAAAGVANLV--RGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAM  236 (272)
Q Consensus       182 IVIsa~g~p~~i--~~~~vk~g~vviDig~~~~~~~~~~~~~~~~k~~Gdvd~~~~~  236 (272)
                      +||-+||.-.-.  -..+++.|+-.|=++.++.+.    .   +-.++-.|++++..
T Consensus        82 vViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~~~~----~---~~t~v~GvNh~~~~  131 (172)
T d2czca2          82 IIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKADV----A---EVSFVAQANYEAAL  131 (172)
T ss_dssp             EEEECCSTTHHHHHHHHHHHHTCEEEECTTSCGGG----S---SEEECHHHHGGGGT
T ss_pred             EEEECCCCCCCHHHHHHHHHcCCCEEEECCCCccc----C---CCeeEecccchhhc
Confidence            999999974321  123566677666666554320    0   11366667765533

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.97  E-value=0.33  Score=36.29  Aligned_cols=48  Identities=15%  Similarity=0.198  Sum_probs=35.2

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEE-eCCCCCHhhhcCCCcEEEEecC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIV-HALTKNPEQITSEADIVIAAAG  188 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~-~~~t~~l~~~l~~ADIVIsa~g  188 (272)
                      |+.|+|++|-.|+.++..+.+++.++... ++   +..+.+.++|+||.-+.
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~---~~~~~~~~~DVvIDFS~   50 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDV---NGVEELDSPDVVIDFSS   50 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEET---TEEEECSCCSEEEECSC
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECC---CcHHHhccCCEEEEecC
Confidence            68999974445999999999999875543 33   33456788999985554

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=87.91  E-value=0.2  Score=41.52  Aligned_cols=36  Identities=19%  Similarity=0.390  Sum_probs=30.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHh-CCCEEEEEeCC
Q 024116          133 EIMGKNAVVIGRSNIVGLPTSLLLQR-HHATVSIVHAL  169 (272)
Q Consensus       133 ~l~gk~v~ViG~g~~vG~~la~~L~~-~ga~V~v~~~~  169 (272)
                      ......|+|||+|-+ |-.+|..|++ .|.+|+++++.
T Consensus        30 ~~~e~DViVIGaGpa-GL~aA~~LA~~~G~~V~vlE~~   66 (278)
T d1rp0a1          30 TYAETDVVVVGAGSA-GLSAAYEISKNPNVQVAIIEQS   66 (278)
T ss_dssp             HHTEEEEEEECCSHH-HHHHHHHHHTSTTSCEEEEESS
T ss_pred             cccCCCEEEECCCHH-HHHHHHHHHHccCCeEEEEecC
Confidence            456788999999887 9999998877 49999999865

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.78  E-value=0.34  Score=36.11  Aligned_cols=35  Identities=17%  Similarity=0.102  Sum_probs=28.6

Q ss_pred             ccceEEEEcCCcccHHHHHHHHH----hCCCEEEEEeCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQ----RHHATVSIVHALT  170 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~----~~ga~V~v~~~~t  170 (272)
                      ++|+++|||+|-+ |--+|..|.    +.|.+|+++++..
T Consensus        36 ~~k~i~IvGgG~~-G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          36 EVKSITIIGGGFL-GSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             HCSEEEEECCSHH-HHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             cCCEEEEECCCHH-HHHHHHHHHHHHHhcCCEEEEecccc
Confidence            4789999999885 988887774    4689999998765

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.74  E-value=0.23  Score=39.22  Aligned_cols=33  Identities=15%  Similarity=0.219  Sum_probs=29.5

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ...|+|||+|-+ |..+|..+++.|.+|+++.+.
T Consensus         5 ~yDviVIG~GpA-Gl~aA~~aa~~G~kV~lie~~   37 (233)
T d1v59a1           5 SHDVVIIGGGPA-GYVAAIKAAQLGFNTACVEKR   37 (233)
T ss_dssp             EEEEEEECCSHH-HHHHHHHHHHTTCCEEEEESS
T ss_pred             ccCEEEECCCHH-HHHHHHHHHHCCCcEEEEEec
Confidence            357899999998 999999999999999999764

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=87.54  E-value=0.25  Score=40.39  Aligned_cols=34  Identities=24%  Similarity=0.216  Sum_probs=28.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga-~V~v~~~~  169 (272)
                      +++++|.|+++-+|+.++..|+++|+ .|.++.|+
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~   43 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRS   43 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESS
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            56899999877789999999999998 57777664

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=87.32  E-value=0.2  Score=42.18  Aligned_cols=32  Identities=22%  Similarity=0.369  Sum_probs=29.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      -.|+|||+|.+ |-.+|..|+++|++|+++.+.
T Consensus        24 ~DVvVIG~G~a-Gl~aA~~la~~G~~V~llEk~   55 (322)
T d1d4ca2          24 TDVVIIGSGGA-GLAAAVSARDAGAKVILLEKE   55 (322)
T ss_dssp             CSEEEECSSHH-HHHHHHHHHTTTCCEEEECSS
T ss_pred             ceEEEECcCHH-HHHHHHHHHHCCCcEEEEeCC
Confidence            46999999997 999999999999999999864

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.28  E-value=0.22  Score=39.02  Aligned_cols=32  Identities=19%  Similarity=0.237  Sum_probs=28.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ..++|||+|-+ |..+|..+++.|.+|+++.+.
T Consensus         4 ~DviVIG~Gpa-Gl~aA~~aar~G~kV~vIEk~   35 (223)
T d1ebda1           4 TETLVVGAGPG-GYVAAIRAAQLGQKVTIVEKG   35 (223)
T ss_dssp             CSEEEECCSHH-HHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEECCCHH-HHHHHHHHHHCCCEEEEEecC
Confidence            46899999887 999999999999999999643

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=87.26  E-value=0.74  Score=33.38  Aligned_cols=38  Identities=16%  Similarity=0.238  Sum_probs=32.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN  172 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~~  172 (272)
                      -.+.|+.|+|.|.. ||-++....+.|.+|.+++.+...
T Consensus         9 ~~~~kigIlGgGQL-~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2           9 PAATRVMLLGSGEL-GKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             TTCCEEEEESCSHH-HHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCCCEEEEEeCCHH-HHHHHHHHHHCCCEEEEEcCCCCC
Confidence            35678999999885 999999999999999999876543

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.23  E-value=0.3  Score=41.77  Aligned_cols=32  Identities=9%  Similarity=0.066  Sum_probs=27.4

Q ss_pred             cceEEEEcCC---cccHHHHHHHHHhCCCEEEEEeC
Q 024116          136 GKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       136 gk~v~ViG~g---~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      +|-++|-|+|   |+ |+++|..|+++||+|.++.+
T Consensus         2 ~kVAlITGaa~s~GI-G~aiA~~la~~GA~V~i~~~   36 (329)
T d1uh5a_           2 EDICFIAGIGDTNGY-GWGIAKELSKRNVKIIFGIW   36 (329)
T ss_dssp             CCEEEEECCSSSSSH-HHHHHHHHHHTTCEEEEEEC
T ss_pred             CcEEEEeCCCCCChH-HHHHHHHHHHcCCEEEEEeC
Confidence            6778888954   64 99999999999999999864

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=87.16  E-value=0.18  Score=39.65  Aligned_cols=32  Identities=13%  Similarity=0.182  Sum_probs=28.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ..|+|||+|-+ |..+|..+++.|.+|+++.+.
T Consensus         4 yDvvVIGgGpa-Gl~aA~~aa~~G~kV~vie~~   35 (221)
T d1dxla1           4 NDVVIIGGGPG-GYVAAIKAAQLGFKTTCIEKR   35 (221)
T ss_dssp             CCEEEECCSHH-HHHHHHHHHHHTCCEEEEECS
T ss_pred             CCEEEECCCHH-HHHHHHHHHHCCCcEEEEEec
Confidence            46899999987 999999999999999999764

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=86.81  E-value=0.22  Score=41.79  Aligned_cols=32  Identities=19%  Similarity=0.322  Sum_probs=28.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      -.|+|||+|.+ |-.+|..|+++|++|+++...
T Consensus         6 ~DVvVIG~G~A-Gl~AAl~aa~~G~~V~liEK~   37 (336)
T d2bs2a2           6 CDSLVIGGGLA-GLRAAVATQQKGLSTIVLSLI   37 (336)
T ss_dssp             CSEEEECCSHH-HHHHHHHHHTTTCCEEEECSS
T ss_pred             cCEEEECcCHH-HHHHHHHHHHCCCCEEEEecC
Confidence            45999999998 999999999999999999764

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=86.52  E-value=0.38  Score=33.11  Aligned_cols=33  Identities=18%  Similarity=0.068  Sum_probs=29.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t  170 (272)
                      |+|.|+|.|.. ||=++......|.+|.+.+...
T Consensus         2 k~vgIlG~GQL-grMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGNGQL-GRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBCSHH-HHHHHHHHGGGTEEEEEECTTS
T ss_pred             CEEEEEcCCHH-HHHHHHHHHHcCCEEEEEcCCC
Confidence            78999999995 9999999999999999997654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=86.51  E-value=0.5  Score=33.98  Aligned_cols=36  Identities=14%  Similarity=0.148  Sum_probs=28.6

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHh---CCCEEEEEeCCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQR---HHATVSIVHALT  170 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~---~ga~V~v~~~~t  170 (272)
                      -..|+++|||+|-+ |--+|..|.+   .|..|+++.+..
T Consensus        16 ~~p~~v~IiGgG~i-g~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          16 EAPKRALCVGGGYI-SIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             SCCSEEEEECSSHH-HHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             ccCCeEEEECCChH-HHHHHHHhHhhcccccccceecccc
Confidence            34689999999875 9999877554   478999998764

>d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=86.14  E-value=5  Score=29.60  Aligned_cols=112  Identities=8%  Similarity=0.064  Sum_probs=69.8

Q ss_pred             CeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCccEEEEcCCCCCCCCHHHHHhc
Q 024116            9 PGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDA   88 (272)
Q Consensus         9 p~Laii~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~el~~~i~~ln~d~~v~Gi~vq~Plp~~~~~~~i~~~   88 (272)
                      ||+.|+-...--.++...+...+.+++.|+++..+.++.. +..++.       +  +.+.+++-.|             
T Consensus         1 pkv~I~Y~S~tG~te~~A~~i~~~l~~~g~~v~~~~~~~~-~~~~~~-------~--~~~~vii~~s-------------   57 (147)
T d1f4pa_           1 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASV-EAGGLF-------E--GFDLVLLGCS-------------   57 (147)
T ss_dssp             CEEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGC-CSTTTT-------T--TCSEEEEEEC-------------
T ss_pred             CcEEEEEECCChhHHHHHHHHHHHHHHCCCeEEEEecccc-chhhhh-------c--ccCeEEEEec-------------
Confidence            8888877777778889999999999999999998887532 111110       0  0111111111             


Q ss_pred             CCcccccCccccccccccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCc-------ccHHHHHHHHHhCCC
Q 024116           89 VSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSN-------IVGLPTSLLLQRHHA  161 (272)
Q Consensus        89 i~p~KDvdg~~~~n~g~l~~~~~~~~~~p~Ta~g~~~~l~~~~~~l~gk~v~ViG~g~-------~vG~~la~~L~~~ga  161 (272)
                                        ..|+ ...-.|.....+++.|+  ..+++|+++.|+|-|.       ..++-+...|.+.|+
T Consensus        58 ------------------T~g~-g~~~~~~~~~~f~~~l~--~~~l~~~~~avfGlGds~y~~f~~a~~~l~~~l~~lGa  116 (147)
T d1f4pa_          58 ------------------TWGD-DSIELQDDFIPLFDSLE--ETGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGA  116 (147)
T ss_dssp             ------------------EECS-SSCEECTTTHHHHHTGG--GSCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTC
T ss_pred             ------------------ccCC-cCCChhhhHHHhhhccc--cccccCCcEEEEecCCccHHHHhHHHHHHHHHHHhCCC
Confidence                              1111 11112445566666664  3568999999998321       237888888999998


Q ss_pred             EEE
Q 024116          162 TVS  164 (272)
Q Consensus       162 ~V~  164 (272)
                      +..
T Consensus       117 ~~v  119 (147)
T d1f4pa_         117 EIV  119 (147)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            743

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=86.04  E-value=0.22  Score=42.01  Aligned_cols=34  Identities=24%  Similarity=0.356  Sum_probs=30.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +.-.|+|||+|.+ |-.+|..|+++|++|.++.+.
T Consensus        18 e~~DVvVIGaG~a-Gl~AA~~aa~~G~~V~vlEK~   51 (317)
T d1qo8a2          18 ETTQVLVVGAGSA-GFNASLAAKKAGANVILVDKA   51 (317)
T ss_dssp             EEEEEEEECCSHH-HHHHHHHHHHHTCCEEEECSS
T ss_pred             CccCEEEECcCHH-HHHHHHHHHHCCCcEEEEeCC
Confidence            4567999999997 999999999999999999764

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=85.96  E-value=0.32  Score=38.74  Aligned_cols=33  Identities=21%  Similarity=0.274  Sum_probs=29.5

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ...++|||+|-+ |..+|..|++.|.+|+++.+.
T Consensus         6 dyDviIIG~GPa-GlsaA~~aa~~G~~V~viE~~   38 (229)
T d1ojta1           6 EYDVVVLGGGPG-GYSAAFAAADEGLKVAIVERY   38 (229)
T ss_dssp             EEEEEEECCSHH-HHHHHHHHHHTTCCEEEEESS
T ss_pred             ccCEEEECcCHH-HHHHHHHHHHCCCeEEEEecc
Confidence            457899999987 999999999999999999764

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=85.84  E-value=0.22  Score=39.44  Aligned_cols=32  Identities=13%  Similarity=0.167  Sum_probs=28.6

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .+++|||+|-+ |..+|..+++.|.+|+++++.
T Consensus         6 ~DlvVIG~Gpa-Gl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           6 TTLLIIGGGPG-GYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             CSEEEECCSHH-HHHHHHHHHHHTCCEEEECSS
T ss_pred             cCEEEECCCHH-HHHHHHHHHHCCCcEEEEecC
Confidence            57899999876 999999999999999999753

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=85.48  E-value=2.7  Score=30.97  Aligned_cols=103  Identities=17%  Similarity=0.084  Sum_probs=64.2

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCC-CCCHhhhcCCCcEEEEecCCCccccCCCcC----CCc-EEEEeee
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHAL-TKNPEQITSEADIVIAAAGVANLVRGSWLK----PGA-VVLDVGT  209 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga--~V~v~~~~-t~~l~~~l~~ADIVIsa~g~p~~i~~~~vk----~g~-vviDig~  209 (272)
                      ||++.|--.- -+|....+..+..  +|...... +.++.+.++.+|.|++....  .++++.++    ++. +|.=.|.
T Consensus         2 KI~~f~~~~~-e~~~~e~~~~~~~~v~v~~~~~~~~~e~~~~~~~~d~viv~~~~--~i~~eil~~l~~~~LK~I~~~~v   78 (134)
T d1j4aa2           2 KIFAYAIRED-EKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQL--DYIAETLQALADNGITKMSLRNV   78 (134)
T ss_dssp             EEEECSCCGG-GHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSS--CBCHHHHHHHHHTTCCEEEESSS
T ss_pred             eEEEEecccc-cHHHHHHHHHhCCCEEEEECCCCCCHHHHHHhcCCCEEEEecCC--CcCHHHHhhhcccCeeEEEEccC
Confidence            6788887664 8888877777654  55555433 35677889999987753322  25555553    232 2322221


Q ss_pred             CCCCCCCCCCCCCCceEecccchhhhhhhceEeccCCC-cccHHHHHHHHH
Q 024116          210 CPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPG-GVGPMTVAMLLS  259 (272)
Q Consensus       210 ~~~~~~~~~~~~~~~k~~Gdvd~~~~~~~~~~~tpvpG-GvGp~T~amL~~  259 (272)
                      -                +-.+|.+.+.++-..++-+|| ++...+.+|++.
T Consensus        79 G----------------~d~ID~~aa~~~gI~V~N~P~~svae~a~~~ml~  113 (134)
T d1j4aa2          79 G----------------VDNIDMAKAKELGFQITNVPVYSYTTHAVRNMVV  113 (134)
T ss_dssp             C----------------CTTBCHHHHHHTTCEEECCCCSCCBHHHHHHHHH
T ss_pred             C----------------cCccCHHHHHhCCeEEEECCCCcHHHHHHHHHHH
Confidence            1                134666777787778888886 566777777764

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.43  E-value=0.043  Score=43.76  Aligned_cols=24  Identities=38%  Similarity=0.556  Sum_probs=21.3

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCE
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHAT  162 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~  162 (272)
                      ||+|||+|-+ |-.+|..|+++|.+
T Consensus         2 kV~VIGaGi~-GlstA~~L~~~G~~   25 (246)
T d1kifa1           2 RVVVIGAGVI-GLSTALCIHERYHS   25 (246)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHHHTT
T ss_pred             EEEEECchHH-HHHHHHHHHHCCCC
Confidence            7999999775 99999999999864

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=85.39  E-value=0.28  Score=35.99  Aligned_cols=50  Identities=18%  Similarity=0.118  Sum_probs=33.7

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------C-H-hhhcCCCcEEEEecCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------N-P-EQITSEADIVIAAAGV  189 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t~--------------------~-l-~~~l~~ADIVIsa~g~  189 (272)
                      |+++|+|.|.. |+.++..|.+.  .|.++..+..                    + | +..+.+|+.+|.+++.
T Consensus         1 kHivI~G~g~~-g~~l~~~L~~~--~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~   72 (129)
T d2fy8a1           1 RHVVICGWSES-TLECLRELRGS--EVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLES   72 (129)
T ss_dssp             CCEEEESCCHH-HHHHHHTSCGG--GEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSS
T ss_pred             CEEEEECCCHH-HHHHHHHHcCC--CCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccc
Confidence            67999999885 99999988544  4556654421                    1 1 2346777777777764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.38  E-value=0.65  Score=33.47  Aligned_cols=35  Identities=9%  Similarity=0.108  Sum_probs=27.8

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhC---CCEEEEEeCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRH---HATVSIVHALT  170 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~---ga~V~v~~~~t  170 (272)
                      ..|+++|||+|-+ |--+|..|.+.   |.+|+++++..
T Consensus        19 ~p~~v~ivGgG~i-g~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          19 PPRRVLTVGGGFI-SVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CCSEEEEECSSHH-HHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             cCCeEEEECCcHH-HHHHHHHhhhcccCCcEEEEEeccc
Confidence            4689999999875 99998766544   46899998764

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.28  E-value=0.32  Score=38.62  Aligned_cols=31  Identities=16%  Similarity=0.263  Sum_probs=28.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      ..++|||+|-+ |..+|..+++.|.+|.+++.
T Consensus         4 YDviVIG~Gpa-Gl~aA~~aa~~G~kV~viE~   34 (235)
T d1h6va1           4 FDLIIIGGGSG-GLAAAKEAAKFDKKVMVLDF   34 (235)
T ss_dssp             EEEEEECCSHH-HHHHHHHHGGGCCCEEEECC
T ss_pred             CCEEEECCCHH-HHHHHHHHHHCCCeEEEEec
Confidence            46899999998 99999999999999999984

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=85.03  E-value=0.22  Score=38.66  Aligned_cols=74  Identities=20%  Similarity=0.301  Sum_probs=45.3

Q ss_pred             ceEEEEcCCcccHHH-HHHHHHhCC-CEE-EEEeCCCC-----------------CHhhh-----cCCCcEEEEecCCC-
Q 024116          137 KNAVVIGRSNIVGLP-TSLLLQRHH-ATV-SIVHALTK-----------------NPEQI-----TSEADIVIAAAGVA-  190 (272)
Q Consensus       137 k~v~ViG~g~~vG~~-la~~L~~~g-a~V-~v~~~~t~-----------------~l~~~-----l~~ADIVIsa~g~p-  190 (272)
                      -|+.|||+|++ |+- +..+|.+.. .++ .++.|+..                 .++++     ..+.|+|+.||+.. 
T Consensus         5 irvaIIGaG~i-g~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~   83 (157)
T d1nvmb1           5 LKVAIIGSGNI-GTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASA   83 (157)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHH
T ss_pred             cEEEEEcCcHH-HHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchh
Confidence            47999999886 764 556665443 454 44554421                 11222     23579999998742 


Q ss_pred             cc---ccCCCcCCCcEEEEeeeCC
Q 024116          191 NL---VRGSWLKPGAVVLDVGTCP  211 (272)
Q Consensus       191 ~~---i~~~~vk~g~vviDig~~~  211 (272)
                      |.   .-+...+.|..|||....+
T Consensus        84 h~~~~~~~~aa~~G~~VID~s~a~  107 (157)
T d1nvmb1          84 HVQNEALLRQAKPGIRLIDLTPAA  107 (157)
T ss_dssp             HHHHHHHHHHHCTTCEEEECSTTC
T ss_pred             HHHhHHHHHHHHcCCEEEEccccc
Confidence            21   2234468899999987543

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.97  E-value=0.37  Score=36.14  Aligned_cols=31  Identities=16%  Similarity=0.300  Sum_probs=25.7

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .||+|||+|-+ |--+|..|. ++.+|+++++.
T Consensus         1 ~rVvIIGgG~~-G~e~A~~l~-~~~~Vtvv~~~   31 (167)
T d1xhca1           1 SKVVIVGNGPG-GFELAKQLS-QTYEVTVIDKE   31 (167)
T ss_dssp             CEEEEECCSHH-HHHHHHHHT-TTSEEEEECSS
T ss_pred             CeEEEECCcHH-HHHHHHHHH-cCCCEEEEecc
Confidence            37999999885 999998886 46799999763

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=84.71  E-value=0.35  Score=40.24  Aligned_cols=34  Identities=18%  Similarity=0.319  Sum_probs=28.6

Q ss_pred             cceEEEEcCCcccHHHHHHHHH-----hCCCEEEEEeCCC
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQ-----RHHATVSIVHALT  170 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~-----~~ga~V~v~~~~t  170 (272)
                      .-.|+|||+|-+ |-.+|.+|+     +.|.+|+|+++..
T Consensus         7 ~yDV~IvGaG~a-Gl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           7 YCDVLIVGAGPA-GLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEEEECCSHH-HHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CCCEEEECcCHH-HHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            357999999875 999999996     5789999998764

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=84.47  E-value=0.28  Score=42.24  Aligned_cols=29  Identities=7%  Similarity=0.225  Sum_probs=25.9

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEE
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIV  166 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~  166 (272)
                      ||+|.|++|.+|+.++..|+++|..|+++
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~   30 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVN   30 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEE
Confidence            79999999999999999999999875554

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=84.38  E-value=0.41  Score=40.14  Aligned_cols=31  Identities=19%  Similarity=0.249  Sum_probs=28.4

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      -.++|||+|-. |-.+|..|++.|.+|.|+.+
T Consensus         5 yDviIVGsG~a-G~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           5 YDVVIVGSGPI-GCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHHTTCEEEEECS
T ss_pred             ccEEEECcCHH-HHHHHHHHhhCCCeEEEEec
Confidence            36899999887 99999999999999999985

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=84.05  E-value=0.39  Score=40.79  Aligned_cols=30  Identities=23%  Similarity=0.205  Sum_probs=28.0

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      .|+|||.|-. |-.+|..|++.|.+|+++.+
T Consensus         4 ~VIVVGsG~a-G~v~A~rLaeaG~~VlvLEa   33 (367)
T d1n4wa1           4 PAVVIGTGYG-AAVSALRLGEAGVQTLMLEM   33 (367)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCCEEEEES
T ss_pred             eEEEeCcCHH-HHHHHHHHHHCcCeEEEEec
Confidence            5899999887 99999999999999999986

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.69  E-value=0.42  Score=37.46  Aligned_cols=32  Identities=22%  Similarity=0.250  Sum_probs=28.4

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ..++|||+|-+ |..+|..+++.|.+|+++.+.
T Consensus         4 yDviIIG~Gpa-G~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           4 YDYLVIGGGSG-GLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             CSEEEECCSHH-HHHHHHHHHHTTCCEEEEESS
T ss_pred             cCEEEECCCHH-HHHHHHHHHHCCCEEEEEecc
Confidence            35899999987 999999999999999999753

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.13  E-value=0.38  Score=37.51  Aligned_cols=31  Identities=13%  Similarity=0.211  Sum_probs=28.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      ..++|||+|-+ |..+|..|++.|.+|.++.+
T Consensus         4 YDviIIGgGpA-Gl~aA~~aar~G~~V~viE~   34 (229)
T d3lada1           4 FDVIVIGAGPG-GYVAAIKSAQLGLKTALIEK   34 (229)
T ss_dssp             CSEEEECCSHH-HHHHHHHHHHHTCCEEEEEC
T ss_pred             CCEEEECcCHH-HHHHHHHHHHCCCeEEEEec
Confidence            35899999998 99999999999999999974

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.78  E-value=0.38  Score=40.39  Aligned_cols=35  Identities=14%  Similarity=0.425  Sum_probs=30.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhC--CCEEEEEeCC
Q 024116          134 IMGKNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHAL  169 (272)
Q Consensus       134 l~gk~v~ViG~g~~vG~~la~~L~~~--ga~V~v~~~~  169 (272)
                      ..+++|+|||+|-+ |..+|..|+++  |.+|+++.+.
T Consensus        48 ~~~~~~~~~g~g~~-g~~~a~~~~~~~~~~~~~~~~~~   84 (311)
T d2gjca1          48 FAVSDVIIVGAGSS-GLSAAYVIAKNRPDLKVCIIESS   84 (311)
T ss_dssp             TTEESEEEECCSHH-HHHHHHHHHHHCTTSCEEEECSS
T ss_pred             ccCCCEEEECCCHH-HHHHHHHHHHhCCCCeEEEEEcC
Confidence            35788999999997 99999999854  8899999875

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=82.76  E-value=0.57  Score=38.18  Aligned_cols=34  Identities=24%  Similarity=0.178  Sum_probs=29.7

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      +...++|||+|-+ |..+|..++++|.+|+++.+.
T Consensus        41 k~yDvvVIGgG~a-G~~aA~~~a~~G~kv~vve~~   74 (261)
T d1mo9a1          41 REYDAIFIGGGAA-GRFGSAYLRAMGGRQLIVDRW   74 (261)
T ss_dssp             SCBSEEEECCSHH-HHHHHHHHHHTTCCEEEEESS
T ss_pred             ccCCEEEECCCHH-HHHHHHHHHHCCCeEEEEecc
Confidence            4567999999887 999999999999999998753

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=82.71  E-value=0.5  Score=36.69  Aligned_cols=31  Identities=23%  Similarity=0.224  Sum_probs=26.4

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC--CEEEEEeCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHAL  169 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~g--a~V~v~~~~  169 (272)
                      ||+|||+|-+ |--+|..|.+.+  .+|++.++.
T Consensus         2 KVvIIGgG~~-G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           2 KVIVLGSSHG-GYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             EEEEECSSHH-HHHHHHHHHHHCTTSEEEEEESS
T ss_pred             EEEEECCcHH-HHHHHHHHHhcCCCCeEEEEeCC
Confidence            7999999886 999999998875  589998764

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=82.47  E-value=0.29  Score=41.56  Aligned_cols=37  Identities=22%  Similarity=0.404  Sum_probs=32.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      ++.+.-.|+|||+|.+ |-.+|..++++|++|+++.+.
T Consensus         3 ~~~~~~DVlVVG~G~A-Gl~AAl~aa~~G~~V~lleK~   39 (330)
T d1neka2           3 LPVREFDAVVIGAGGA-GMRAALQISQSGQTCALLSKV   39 (330)
T ss_dssp             CCEEEESCEEECCSHH-HHHHHHHHHHTTCCCEEECSS
T ss_pred             CCcccCCEEEECcCHH-HHHHHHHHHHcCCeEEEEeCC
Confidence            4556678999999998 999999999999999999754

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=81.93  E-value=0.5  Score=40.18  Aligned_cols=31  Identities=29%  Similarity=0.291  Sum_probs=28.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024116          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       137 k~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~  168 (272)
                      -.|+|||+|-. |-.+|..|++.|.+|+|+.+
T Consensus         8 ~dvIVVGsG~a-G~v~A~rLaeaG~~VlvLEa   38 (370)
T d3coxa1           8 VPALVIGSGYG-GAVAALRLTQAGIPTQIVEM   38 (370)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHHTTCCEEEECS
T ss_pred             CCEEEECcCHH-HHHHHHHHHHCCCeEEEEeC
Confidence            36899999987 99999999999999999986

>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein TM0922, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=81.90  E-value=0.22  Score=40.46  Aligned_cols=48  Identities=15%  Similarity=0.051  Sum_probs=32.5

Q ss_pred             HHHHHHHHHhCCCCccceEEEE-cCCcc--cHHHHHHHHHhCCCEEEEEeC
Q 024116          121 KGCIELLIRSGVEIMGKNAVVI-GRSNI--VGLPTSLLLQRHHATVSIVHA  168 (272)
Q Consensus       121 ~g~~~~l~~~~~~l~gk~v~Vi-G~g~~--vG~~la~~L~~~ga~V~v~~~  168 (272)
                      .++.+.+.+.--+.+.++|+|+ |.|+.  =|-.+|++|.++|.+|+++..
T Consensus        25 ~~~a~~i~~~~~~~~~~~vlvl~G~GNNGGDGl~~Ar~L~~~g~~V~v~~~   75 (211)
T d2ax3a2          25 ISVVLAMEEELGNLSDYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFL   75 (211)
T ss_dssp             HHHHHHHHHHHSCCTTCEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEEC
T ss_pred             HHHHHHHHHhcccccCCcEEEEECCCCCchhHHHHHHHHHhcCCeeEEEec
Confidence            5566666554345666776665 65543  256788999999999988864

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=81.79  E-value=0.54  Score=38.29  Aligned_cols=31  Identities=29%  Similarity=0.458  Sum_probs=28.2

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~  169 (272)
                      .++|||+|-+ |..+|..+++.|.+|.++++.
T Consensus         3 DviVIG~G~a-G~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           3 DLIVIGGGSG-GMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             SEEEECCSHH-HHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEECCCHH-HHHHHHHHHHCCCeEEEEecC
Confidence            4799999987 999999999999999999864

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=81.69  E-value=0.58  Score=37.91  Aligned_cols=29  Identities=17%  Similarity=0.297  Sum_probs=26.3

Q ss_pred             EEEEcCCcccHHHHHHHHHhCCC-EEEEEe
Q 024116          139 AVVIGRSNIVGLPTSLLLQRHHA-TVSIVH  167 (272)
Q Consensus       139 v~ViG~g~~vG~~la~~L~~~ga-~V~v~~  167 (272)
                      |+|.|++|.+|..++..|+++|. .|++++
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d   31 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVD   31 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEE
Confidence            78999999999999999999996 688875

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=81.69  E-value=1  Score=35.49  Aligned_cols=54  Identities=17%  Similarity=0.062  Sum_probs=37.5

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--CCHhhhcCCCcEEEEecCCC
Q 024116          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--KNPEQITSEADIVIAAAGVA  190 (272)
Q Consensus       135 ~gk~v~ViG~g~~vG~~la~~L~~~ga~V~v~~~~t--~~l~~~l~~ADIVIsa~g~p  190 (272)
                      +.|+++|+|+|+. ||-+...+...+.++..+-.+.  ..+.+.+.+.|++ .|+|.+
T Consensus         1 k~kkl~i~Gagg~-~~~v~di~~~~~~~~~~f~dd~~~~~~~~~~~~~~~~-iaIG~~   56 (193)
T d3bswa1           1 RTEKIYIYGASGH-GLVCEDVAKNMGYKECIFLDDFKGMKFESTLPKYDFF-IAIGNN   56 (193)
T ss_dssp             CCSEEEEEC--CH-HHHHHHHHHHHTCCEEEECCCCTTGGGGGGSCCCEEE-ECCSCH
T ss_pred             CCCEEEEEcCCHh-HHHHHHHHHhCCCcEEEEEcCCCCcccccccccccEE-EEECCc
Confidence            4689999999997 9999999999887766554332  2345666777765 477754

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.55  E-value=0.27  Score=37.15  Aligned_cols=32  Identities=25%  Similarity=0.451  Sum_probs=26.8

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEE
Q 024116          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS  164 (272)
Q Consensus       132 ~~l~gk~v~ViG~g~~vG~~la~~L~~~ga~V~  164 (272)
                      ....||+|+|||.|.+ |.-+|..|.+.|++++
T Consensus        25 ~~~~gkrVvVIGgG~~-g~d~a~~~~r~G~~~~   56 (162)
T d1ps9a2          25 KAPVGNKVAIIGCGGI-GFDTAMYLSQPGESTS   56 (162)
T ss_dssp             CCCCCSEEEEECCHHH-HHHHHHHHTCCSSCGG
T ss_pred             ccccCCceEEEcCchh-HHHHHHHHHHcCCccc
Confidence            3457999999999885 9999999999998543

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=80.50  E-value=0.9  Score=38.83  Aligned_cols=32  Identities=25%  Similarity=0.282  Sum_probs=28.1

Q ss_pred             cceEEEEcCCcccHHHHHHHHHh-CCCEEEEEe
Q 024116          136 GKNAVVIGRSNIVGLPTSLLLQR-HHATVSIVH  167 (272)
Q Consensus       136 gk~v~ViG~g~~vG~~la~~L~~-~ga~V~v~~  167 (272)
                      +.||+|.|++|.+|..++..|++ .|.+|++++
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D   34 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVD   34 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEe
Confidence            56899999999999999998875 689999875

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.23  E-value=2  Score=32.13  Aligned_cols=49  Identities=18%  Similarity=0.197  Sum_probs=31.6

Q ss_pred             eEEEEcCCcccHHHHHHHHHhC-CCEEEE-EeCCCCCHhhh-cCCCcEEEEec
Q 024116          138 NAVVIGRSNIVGLPTSLLLQRH-HATVSI-VHALTKNPEQI-TSEADIVIAAA  187 (272)
Q Consensus       138 ~v~ViG~g~~vG~~la~~L~~~-ga~V~v-~~~~t~~l~~~-l~~ADIVIsa~  187 (272)
                      ||.|+|++|-+|+.++..+.+. +.++.- +++. +.+... ..++|+||.-+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~-~~~~~~~~~~~DvvIDFS   52 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG-DPLSLLTDGNTEVVIDFT   52 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT-CCTHHHHTTTCSEEEECC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC-CchhhhccccCCEEEEcc
Confidence            6899996444599999886654 466443 3333 333333 36789998655