Citrus Sinensis ID: 024136

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
Protein Sequence
MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGVRILQPNLTFLE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHEHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccHHHHHHHHHHccccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
magrydsnpfdeeevnpfsdpavrgkssgqsrfggggffttnsasvppatnsrlsplphepagfnferdapidipldTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLeeknwppffpiihhdianeiPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFcifasvappiifkgksltgvlpavdvmgdhaLVGVrilqpnltfle
Flexible Loop (DISEMBL)
magrydsnpfdeeevnpfsdpaVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPLDTAADLKKKEKELQAKeaelrrreqdvrrKEEAAAragivleeknwPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGVRILQPNLTFLE
Low Complexity Region (SEG)
MAGRYDSNPFDEEEVNPFSDPAVRgkssgqsrfggggffTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPldtaadlkkkekelqakeaelRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGVRILQPNLTFLE
Disordered region (IsUnstruct)
****************************************************************************************************************AGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGVRILQPNLTF**
Disordered Region (DISOPRED)
**GRYDSNPFDEEEVNPFSD************************************************************************************************L**KNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGVRILQPNLTFLE
Disordered Region (DISEMBL)
**************VNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPLDTAADLKKKEKELQAKE*****************ARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGVRILQPNLTFLE
Disordered Region (DISPRO)
*****DSNPFDEEEVNPFSDPAVRGK**********G********************************APIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGVRILQPNLTFLE
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPLDTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGVRILQPNLTFLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	272	2.2.26 [Sep-21-2011]
A2YMP7	306	Putative secretory carrie	N/A	no	0.941	0.836	0.679	1e-106
Q8H5X5	306	Secretory carrier-associa	yes	no	0.941	0.836	0.679	1e-106
Q9M5P2	289	Secretory carrier-associa	yes	no	0.871	0.820	0.704	1e-105
Q9ZTX0	289	Secretory carrier-associa	N/A	no	0.871	0.820	0.702	1e-103
Q75IC7	313	Secretory carrier-associa	no	no	0.948	0.824	0.674	1e-102
Q9SXA5	291	Secretory carrier-associa	no	no	0.878	0.821	0.681	1e-101
Q7F613	286	Secretory carrier-associa	no	no	0.871	0.828	0.681	7e-97
Q9SKT3	282	Secretory carrier-associa	no	no	0.845	0.815	0.661	3e-96
Q60EA5	282	Secretory carrier-associa	no	no	0.856	0.826	0.643	2e-88
Q9LR68	283	Secretory carrier-associa	no	no	0.856	0.823	0.617	2e-85

>sp|A2YMP7|SCAM1_ORYSI Putative secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. indica GN=SCAMP1 PE=3 SV=1

 Score =  385 bits (989), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 178/262 (67%), Positives = 223/262 (85%), Gaps = 6/262 (2%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPP-ATNSRLSPLPH 59
           MAGRYDSNPF+E++VNPFS+ A RGK+ GQ  +GGG F+  N  +VP  ++NSRLSPLP 
Sbjct: 1   MAGRYDSNPFEEDDVNPFSEQA-RGKAGGQPSYGGGAFYMPNPRNVPSMSSNSRLSPLPP 59

Query: 60  EPAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEE 119
           EPA F     A +DIPLD++ DLK +EKELQA+EAEL +RE++++R+EEAAARAGIV+EE
Sbjct: 60  EPAAFG----ATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEE 115

Query: 120 KNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIW 179
           KNWPPF P+IHHDI NEIP HLQR+QYVAFA++LGL  CL WN++AVT+AW+KGEGVKIW
Sbjct: 116 KNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIW 175

Query: 180 FLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFK 239
            LAIIYFI+GVPGAYVLWYRPLY A RT+SA+KFG FFL YL HI FC+F++VAPP++F+
Sbjct: 176 LLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCVFSAVAPPVVFE 235

Query: 240 GKSLTGVLPAVDVMGDHALVGV 261
           GKSL G+LPA+D++  +ALVG+
Sbjct: 236 GKSLAGILPAIDLISKNALVGI 257

Probably involved in membrane trafficking.
Oryza sativa subsp. indica (taxid: 39946)

>sp|Q8H5X5|SCAM1_ORYSJ Secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. japonica GN=SCAMP1 PE=2 SV=1

 Score =  385 bits (988), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 178/262 (67%), Positives = 223/262 (85%), Gaps = 6/262 (2%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPP-ATNSRLSPLPH 59
           MAGRYDSNPF+E++VNPFS+ A RGK+ GQ  +GGG F+  N  +VP  ++NSRLSPLP 
Sbjct: 1   MAGRYDSNPFEEDDVNPFSEQA-RGKAGGQPSYGGGAFYMPNPRNVPSVSSNSRLSPLPP 59

Query: 60  EPAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEE 119
           EPA F     A +DIPLD++ DLK +EKELQA+EAEL +RE++++R+EEAAARAGIV+EE
Sbjct: 60  EPAAFG----ATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEE 115

Query: 120 KNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIW 179
           KNWPPF P+IHHDI NEIP HLQR+QYVAFA++LGL  CL WN++AVT+AW+KGEGVKIW
Sbjct: 116 KNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIW 175

Query: 180 FLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFK 239
            LAIIYFI+GVPGAYVLWYRPLY A RT+SA+KFG FFL YL HI FC+F++VAPP++F+
Sbjct: 176 LLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCVFSAVAPPVVFE 235

Query: 240 GKSLTGVLPAVDVMGDHALVGV 261
           GKSL G+LPA+D++  +ALVG+
Sbjct: 236 GKSLAGILPAIDLISKNALVGI 257

Probably involved in membrane trafficking.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M5P2|SCAM3_ARATH Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana GN=SCAMP3 PE=1 SV=1

 Score =  382 bits (981), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/264 (70%), Positives = 214/264 (81%), Gaps = 27/264 (10%)

Query: 1   MAGRYDSNPF-DEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPH 59
           MA RYD NPF +EEEVNPF+                      N+  VPPA+NSRLSPLP 
Sbjct: 1   MANRYDPNPFAEEEEVNPFA----------------------NARGVPPASNSRLSPLPP 38

Query: 60  EPAGFNFERDAPIDIPLDTAA--DLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVL 117
           EP GF++ R   +DIPLD A   DLKKKEKELQAKEAEL+RREQD++RKE+AAARAGIV+
Sbjct: 39  EPVGFDYGRT--VDIPLDRAGTQDLKKKEKELQAKEAELKRREQDLKRKEDAAARAGIVI 96

Query: 118 EEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVK 177
           E KNWPPFFP+IHHDIANEIP+HLQRLQYV FATYLGL LCL WNI+AVTTAWIKGEGV 
Sbjct: 97  EVKNWPPFFPLIHHDIANEIPVHLQRLQYVTFATYLGLVLCLFWNIIAVTTAWIKGEGVT 156

Query: 178 IWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPII 237
           IW LA+IYFIAGVPG YVLWYRPLYRAFRT+SA+ FGWFFLFY+LHI FC+FA+VAPP++
Sbjct: 157 IWLLALIYFIAGVPGGYVLWYRPLYRAFRTDSALSFGWFFLFYMLHIAFCVFAAVAPPVV 216

Query: 238 FKGKSLTGVLPAVDVMGDHALVGV 261
           FKGKSL G+LPA+DV+   A+VG+
Sbjct: 217 FKGKSLAGILPAIDVLSGQAIVGI 240

Probably involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZTX0|SCAM_PEA Secretory carrier-associated membrane protein OS=Pisum sativum GN=PSAM2 PE=2 SV=1

 Score =  374 bits (959), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/259 (70%), Positives = 208/259 (80%), Gaps = 22/259 (8%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHE 60
           MAGRYD NPFDEE+VNPFS+P                       S   ATNSR +PL  +
Sbjct: 1   MAGRYDPNPFDEEQVNPFSNPR----------------------SAASATNSRPAPLNPD 38

Query: 61  PAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEK 120
            A +N+     +DIPLDT+ D KKKE++LQAKEAELR+REQ+VRRKEEA ARAGIV+EEK
Sbjct: 39  RADYNYGFGPTVDIPLDTSTDGKKKERDLQAKEAELRKREQEVRRKEEAIARAGIVIEEK 98

Query: 121 NWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWF 180
           NWPPFFPIIHHDI NEIPIHL+ LQYVAF + LGL LCL WN+V+VT AWIKGEGVKIWF
Sbjct: 99  NWPPFFPIIHHDITNEIPIHLRTLQYVAFFSLLGLVLCLTWNVVSVTAAWIKGEGVKIWF 158

Query: 181 LAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKG 240
           LAIIYFIAGVPGAY LWYRPLYRAFRT+SA+KFGWFF+FYLLHIGFCI A+VAPPI+FKG
Sbjct: 159 LAIIYFIAGVPGAYALWYRPLYRAFRTDSAIKFGWFFMFYLLHIGFCILAAVAPPIVFKG 218

Query: 241 KSLTGVLPAVDVMGDHALV 259
           KSLTG+L A+DV+GD+ LV
Sbjct: 219 KSLTGILSAIDVVGDYTLV 237

Probably involved in membrane trafficking.

Pisum sativum (taxid: 3888)

>sp|Q75IC7|SCAM4_ORYSJ Secretory carrier-associated membrane protein 4 OS=Oryza sativa subsp. japonica GN=SCAMP4 PE=2 SV=1

 Score =  372 bits (955), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/267 (67%), Positives = 218/267 (81%), Gaps = 9/267 (3%)

Query: 1   MAGR--YDSNPFDE---EEVNPFSDPAVRGKSSGQSRFGGGGFFTTNS-ASVPPATNSRL 54
           MAGR  YD NPF+E   +EVNPF+D A +G S+GQS + GG F+TT S  S PPAT+  L
Sbjct: 1   MAGRSRYD-NPFEEGGGDEVNPFADKASKGGSAGQSSYSGGAFYTTQSRPSAPPATH--L 57

Query: 55  SPLPHEPAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAG 114
           SPLP EPA F  +   P+DIP+DT+ D+K +EKEL AKEAEL RRE++++R+EEAAARAG
Sbjct: 58  SPLPPEPADFYNDFSTPVDIPMDTSKDMKTREKELLAKEAELNRREKEIKRREEAAARAG 117

Query: 115 IVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGE 174
           IVLE+KNWPPFFPIIH+DI NEIP+HLQR QYVAFA+ LGL LCL WNI+ VT AWIKGE
Sbjct: 118 IVLEDKNWPPFFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVLCLFWNIICVTAAWIKGE 177

Query: 175 GVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAP 234
           G KIWFLA+IYFI G PGAY LWYRPLYRA R ESA+KFGWFFLFYL+HI FC++A+V+P
Sbjct: 178 GPKIWFLAVIYFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYLVHIAFCVYAAVSP 237

Query: 235 PIIFKGKSLTGVLPAVDVMGDHALVGV 261
            I+F GKSLTG+ PA+ ++G+  +VGV
Sbjct: 238 SILFVGKSLTGIFPAISLIGNTVIVGV 264

Probably involved in membrane trafficking.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SXA5|SCAM5_ARATH Secretory carrier-associated membrane protein 5 OS=Arabidopsis thaliana GN=SCAMP5 PE=2 SV=2

 Score =  367 bits (943), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/264 (68%), Positives = 208/264 (78%), Gaps = 25/264 (9%)

Query: 1   MAGRYDSNPFDEE-EVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPH 59
           M GRYD N FDE+ EVNPF++P                       SVP A+NSRLSPLP 
Sbjct: 1   MGGRYDRNTFDEQDEVNPFANPG----------------------SVPAASNSRLSPLPP 38

Query: 60  EPAGFNFER--DAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVL 117
           EPAGF + R  D P+D P   A DLKKKEKELQAKEA+LRRREQD++RK++AAARAGIV+
Sbjct: 39  EPAGFGYGRTVDIPLDRPGSGAQDLKKKEKELQAKEADLRRREQDLKRKQDAAARAGIVI 98

Query: 118 EEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVK 177
           E KNWP FFP+IHHDIANEI + LQRLQY+AFATYLGL L L WNI+AVTTAWIKGEGV 
Sbjct: 99  EAKNWPTFFPLIHHDIANEILVRLQRLQYIAFATYLGLVLALFWNIIAVTTAWIKGEGVT 158

Query: 178 IWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPII 237
           IW LA+IYFI+GVPG YVLWYRPLYRAFR++SA  FGWFFLFY+LHI FC+FA+VAPPI+
Sbjct: 159 IWLLAVIYFISGVPGGYVLWYRPLYRAFRSDSAFNFGWFFLFYMLHILFCLFAAVAPPIV 218

Query: 238 FKGKSLTGVLPAVDVMGDHALVGV 261
           FKGKSL G+LPA+DV+   ALVG+
Sbjct: 219 FKGKSLAGILPAIDVLSAQALVGI 242

Probably involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7F613|SCAM2_ORYSJ Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica GN=SCAMP2 PE=2 SV=1

 Score =  353 bits (906), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 178/261 (68%), Positives = 212/261 (81%), Gaps = 24/261 (9%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHE 60
           MAGRYD NPFDE++VNPF+                GG       SVPPA+NSR+ PLPHE
Sbjct: 1   MAGRYDRNPFDEDDVNPFA----------------GG-------SVPPASNSRMPPLPHE 37

Query: 61  PAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEK 120
           P GF  +R A +DIPLD+  D+KKKEKELQAKEAEL +RE ++RR+EEAA+RAGIV+EEK
Sbjct: 38  P-GFYNDRGATVDIPLDSTKDMKKKEKELQAKEAELNKRESELRRREEAASRAGIVIEEK 96

Query: 121 NWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWF 180
           NWPPFFPIIHHDI+NEIPIHLQR+QY+AF++ LGL  CL WNI+A T AWIKG GV IW 
Sbjct: 97  NWPPFFPIIHHDISNEIPIHLQRMQYLAFSSLLGLAACLFWNIIATTAAWIKGAGVMIWL 156

Query: 181 LAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKG 240
           LAIIYFI+GVPGAYVLWYRPLY A RTESA+KFGWFFLFYL+HI FCI+++VAPP  FKG
Sbjct: 157 LAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHILFCIWSAVAPPFPFKG 216

Query: 241 KSLTGVLPAVDVMGDHALVGV 261
           KSL G+LPA+DV+G++A+VG+
Sbjct: 217 KSLAGILPAIDVIGNNAIVGI 237

Probably involved in membrane trafficking.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SKT3|SCAM1_ARATH Secretory carrier-associated membrane protein 1 OS=Arabidopsis thaliana GN=SCAMP1 PE=1 SV=1

 Score =  351 bits (901), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 170/257 (66%), Positives = 203/257 (78%), Gaps = 27/257 (10%)

Query: 3   GRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHEPA 62
            RY S+ FD+ E+NPF++P                       SVP AT S+LSPLP EP 
Sbjct: 2   SRYQSHSFDDGEINPFANPT----------------------SVPAAT-SKLSPLPPEP- 37

Query: 63  GFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNW 122
              ++R A +DIPLD+  DLK KEKEL+ KEAEL+RREQ+++RKE+A A+AGIV+EEKNW
Sbjct: 38  ---YDRGATMDIPLDSGKDLKAKEKELREKEAELKRREQEIKRKEDAIAQAGIVIEEKNW 94

Query: 123 PPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLA 182
           PPFFP+IHHDI+NEIPIHLQR+QYVAF + LGL +CLLWNIVAVTTAWIKGEG  IWFLA
Sbjct: 95  PPFFPLIHHDISNEIPIHLQRIQYVAFTSMLGLVVCLLWNIVAVTTAWIKGEGPTIWFLA 154

Query: 183 IIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKS 242
           IIYFI+GVPGAYV+WYRPLYRA RT+SA+KFGWFF  YL HI FC+FA+VAPPIIFKGKS
Sbjct: 155 IIYFISGVPGAYVMWYRPLYRAMRTDSALKFGWFFFTYLFHIAFCVFAAVAPPIIFKGKS 214

Query: 243 LTGVLPAVDVMGDHALV 259
           LTG+LPA+DV+  + LV
Sbjct: 215 LTGILPAIDVLSGNILV 231

Probably involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q60EA5|SCAM3_ORYSJ Secretory carrier-associated membrane protein 3 OS=Oryza sativa subsp. japonica GN=SCAMP3 PE=2 SV=1

 Score =  325 bits (834), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 168/261 (64%), Positives = 207/261 (79%), Gaps = 28/261 (10%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHE 60
           MAG++  N F++++VNPF+                GG       SVPPA NSRL PL HE
Sbjct: 1   MAGKHGRNGFEDDDVNPFA----------------GG-------SVPPANNSRLPPLSHE 37

Query: 61  PAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEK 120
           PA F       +DIPLD++ DLKKKEKELQA EAEL +RE++++RKEEAAA+AGIV+E+K
Sbjct: 38  PADFY-----NVDIPLDSSKDLKKKEKELQAMEAELNKRERELKRKEEAAAQAGIVIEDK 92

Query: 121 NWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWF 180
           NWPPFFP+IHH+I+NEIPIHLQR+QY+AF+++LGL  CL WNI+A TTAW+KGEGV IW 
Sbjct: 93  NWPPFFPLIHHNISNEIPIHLQRMQYLAFSSFLGLAACLFWNIIATTTAWVKGEGVIIWL 152

Query: 181 LAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKG 240
           LAIIYFI+GVPGAYVLWYRPLY A RTESA+KFGWFFLFYL+HI FC++A+VAPP  FKG
Sbjct: 153 LAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHIIFCVWAAVAPPFPFKG 212

Query: 241 KSLTGVLPAVDVMGDHALVGV 261
           KSL G+LPA+DV+G  A+VG+
Sbjct: 213 KSLAGILPAIDVIGRSAIVGI 233

Probably involved in membrane trafficking.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LR68|SCAM2_ARATH Secretory carrier-associated membrane protein 2 OS=Arabidopsis thaliana GN=SCAMP2 PE=2 SV=1

 Score =  315 bits (808), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 160/259 (61%), Positives = 196/259 (75%), Gaps = 26/259 (10%)

Query: 3   GRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHEPA 62
            R+D NPF +EE+NPF+                      N  SVPPA+NS L PLP EP 
Sbjct: 2   ARHDPNPFADEEINPFA----------------------NHTSVPPASNSYLKPLPPEP- 38

Query: 63  GFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNW 122
              ++R A +DIPLD+  DL+ KE ELQAKE EL+R+EQ+++R+E+A AR G+V+EEKNW
Sbjct: 39  ---YDRGATVDIPLDSGNDLRAKEMELQAKENELKRKEQELKRREDAIARTGVVIEEKNW 95

Query: 123 PPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLA 182
           P FFP+IHHDI NEIPIHLQ++QYVAF T LGL  CLLWNIVAVT AWIKGEG  IW L+
Sbjct: 96  PEFFPLIHHDIPNEIPIHLQKIQYVAFTTLLGLVGCLLWNIVAVTVAWIKGEGPTIWLLS 155

Query: 183 IIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKS 242
           IIYF+AGVPGAYVLWYRPLYRA RT+SA+KFG FF FY+ HI FC FA+VAPP+IF+GKS
Sbjct: 156 IIYFLAGVPGAYVLWYRPLYRATRTDSALKFGAFFFFYVFHIAFCGFAAVAPPVIFQGKS 215

Query: 243 LTGVLPAVDVMGDHALVGV 261
           LTG LPA++++  +A VG+
Sbjct: 216 LTGFLPAIELLTTNAAVGI 234

Probably involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
255634598	310	unknown [Glycine max]	0.959	0.841	0.816	1e-126
356555064	310	PREDICTED: putative secretory carrier-as	0.959	0.841	0.816	1e-125
356549393	310	PREDICTED: LOW QUALITY PROTEIN: putative	0.959	0.841	0.796	1e-122
192910838	310	secretory carrier membrane protein [Elae	0.959	0.841	0.800	1e-122
255560808	308	secretory carrier membrane protein, puta	0.941	0.831	0.8	1e-121
217072518	311	unknown [Medicago truncatula]	0.948	0.829	0.787	1e-121
363808380	298	uncharacterized protein LOC100815455 [Gl	0.878	0.802	0.758	1e-112
224124600	304	predicted protein [Populus trichocarpa]	0.922	0.825	0.761	1e-110
259490150	305	SC3 protein [Zea mays] gi|195624852|gb|A	0.941	0.839	0.697	1e-108
225447239	285	PREDICTED: secretory carrier-associated	0.867	0.828	0.727	1e-107

>gi|255634598|gb|ACU17661.1| unknown [Glycine max]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 213/261 (81%), Positives = 235/261 (90%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHE 60
           MAGRYDSNPFDEEEVNPFSDP+VRGK+S QS F GG F+TTN  SVP ATNSRL PL  E
Sbjct: 1   MAGRYDSNPFDEEEVNPFSDPSVRGKTSSQSNFSGGAFYTTNPGSVPAATNSRLPPLKPE 60

Query: 61  PAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEK 120
           P  +N+   A +DIPLD++ DLKKKEKELQAKE ELR+REQ+VRRKEEAA+RAGIVLEEK
Sbjct: 61  PVDYNYGFGATVDIPLDSSMDLKKKEKELQAKETELRKREQEVRRKEEAASRAGIVLEEK 120

Query: 121 NWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWF 180
           NWPPFFPIIHHDIANEIPIHLQ+LQYVAF T LGL LCL WN++AVT AWIKGEGVKIWF
Sbjct: 121 NWPPFFPIIHHDIANEIPIHLQKLQYVAFTTLLGLVLCLFWNVIAVTAAWIKGEGVKIWF 180

Query: 181 LAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKG 240
           LAIIYFIAGVPGAYVLWYRPLYRAFR ESA+KFGWFFLFYLLHIGFCI A+VAPPI+FKG
Sbjct: 181 LAIIYFIAGVPGAYVLWYRPLYRAFRNESALKFGWFFLFYLLHIGFCILAAVAPPIVFKG 240

Query: 241 KSLTGVLPAVDVMGDHALVGV 261
           KSLTG+L A+DV+GDHAL+G+
Sbjct: 241 KSLTGILAAIDVLGDHALIGI 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555064|ref|XP_003545859.1| PREDICTED: putative secretory carrier-associated membrane protein 1-like [Glycine max]

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/261 (81%), Positives = 237/261 (90%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHE 60
           MA RYDSNPFDEEEVNPFS+PAVRGK+S QS + GG F+TTN  SV PATNSRLSPL  E
Sbjct: 1   MAHRYDSNPFDEEEVNPFSEPAVRGKTSSQSSYSGGAFYTTNPGSVAPATNSRLSPLNPE 60

Query: 61  PAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEK 120
           PA +N+   A +DIPLD + DLKKKEKELQAKEAELR+REQ+VRRKEEAAARAGIVLEEK
Sbjct: 61  PADYNYGFGATVDIPLDPSTDLKKKEKELQAKEAELRKREQEVRRKEEAAARAGIVLEEK 120

Query: 121 NWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWF 180
           NWPPFFPIIHHDIANEIPIHLQRLQYVAF + LGL LCL WNIVAVT+AWIKGEGVKIWF
Sbjct: 121 NWPPFFPIIHHDIANEIPIHLQRLQYVAFTSLLGLALCLTWNIVAVTSAWIKGEGVKIWF 180

Query: 181 LAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKG 240
           LAIIYFIAG+PGAYVLWYRPLYRAFRT+SA+ FGWFFLFYLLH+GFCI A+VAPPI+FKG
Sbjct: 181 LAIIYFIAGIPGAYVLWYRPLYRAFRTDSALNFGWFFLFYLLHLGFCILAAVAPPIVFKG 240

Query: 241 KSLTGVLPAVDVMGDHALVGV 261
           KSLTG+L A+DV+GDHA++G+
Sbjct: 241 KSLTGILSAIDVVGDHAVIGI 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549393|ref|XP_003543078.1| PREDICTED: LOW QUALITY PROTEIN: putative secretory carrier-associated membrane protein 1-like [Glycine max]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/261 (79%), Positives = 234/261 (89%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHE 60
           MA RYDSNPFDEEEVNPFS+PAVRGK+S QS + GG F+TTN  SV PATNSRLSPL  E
Sbjct: 1   MAHRYDSNPFDEEEVNPFSEPAVRGKTSSQSSYSGGAFYTTNPGSVAPATNSRLSPLNPE 60

Query: 61  PAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEK 120
           PA +N+   A +DI LD + DLKKKEKELQAKE ELR+REQ+VRRKEEAAARAGIVLEEK
Sbjct: 61  PADYNYGFGATVDIRLDPSMDLKKKEKELQAKENELRKREQEVRRKEEAAARAGIVLEEK 120

Query: 121 NWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWF 180
           NWPPFFPIIHHDIANEIPIHLQRLQYVAF + LG  LC+ WNIVAVT+AWIKGEGVKIWF
Sbjct: 121 NWPPFFPIIHHDIANEIPIHLQRLQYVAFTSLLGFALCITWNIVAVTSAWIKGEGVKIWF 180

Query: 181 LAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKG 240
           LAIIYFIAG+PGAYVLWYRPLYRAFRT+SA+ FGWFFLFYLLH+GFCI A+VAPPI+FKG
Sbjct: 181 LAIIYFIAGIPGAYVLWYRPLYRAFRTDSALNFGWFFLFYLLHLGFCILAAVAPPIVFKG 240

Query: 241 KSLTGVLPAVDVMGDHALVGV 261
           KSLTG+L A+DV+G+HA++G+
Sbjct: 241 KSLTGILSAIDVVGNHAVIGI 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192910838|gb|ACF06527.1| secretory carrier membrane protein [Elaeis guineensis]

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/261 (80%), Positives = 235/261 (90%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHE 60
           MAGRYDSNPFDEEEVNPF+DPA RGK++GQS +GGG F+TT   SVPPA NSRLSPLP E
Sbjct: 1   MAGRYDSNPFDEEEVNPFADPAGRGKAAGQSSYGGGPFYTTRPGSVPPALNSRLSPLPPE 60

Query: 61  PAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEK 120
           PA F  +R A +DIPLDTA DLKKKE+ELQAKEAEL +RE++++R EEAA+RAGIV+EEK
Sbjct: 61  PADFYNDRSATVDIPLDTAKDLKKKERELQAKEAELNKREKELKRLEEAASRAGIVIEEK 120

Query: 121 NWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWF 180
           NWPPFFPIIHHDIANEIPIHLQRLQY AFA+ LGL  CLLWN VAVT AWIKGEGVKIWF
Sbjct: 121 NWPPFFPIIHHDIANEIPIHLQRLQYFAFASLLGLTACLLWNFVAVTVAWIKGEGVKIWF 180

Query: 181 LAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKG 240
           LAIIYFI+GVPGAYVLWYRPLYRA RTESA+KFG FFLFYLLHIGFCI+++VAPPIIFKG
Sbjct: 181 LAIIYFISGVPGAYVLWYRPLYRAMRTESALKFGRFFLFYLLHIGFCIYSAVAPPIIFKG 240

Query: 241 KSLTGVLPAVDVMGDHALVGV 261
           KSLTG+LPA+D++ DH LVG+
Sbjct: 241 KSLTGILPAIDLISDHVLVGI 261

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560808|ref|XP_002521417.1| secretory carrier membrane protein, putative [Ricinus communis] gi|223539316|gb|EEF40907.1| secretory carrier membrane protein, putative [Ricinus communis]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/260 (80%), Positives = 234/260 (90%), Gaps = 4/260 (1%)

Query: 1   MAGRY-DSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPH 59
           MAGR+ D NPFDEEEVNPFSDP VRGK+S Q +F GG F+T   AS PP +NSRLSPLP 
Sbjct: 1   MAGRHNDPNPFDEEEVNPFSDPVVRGKASSQQKFSGGAFYT---ASAPPPSNSRLSPLPP 57

Query: 60  EPAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEE 119
           EPA F ++  A +DIP+D+A DL+KKEKELQAKEAELRRREQDV+R+E+AAARAGIVLEE
Sbjct: 58  EPADFGYDHGATVDIPIDSATDLRKKEKELQAKEAELRRREQDVKRREDAAARAGIVLEE 117

Query: 120 KNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIW 179
           KNWPPFFPIIHHDIANEIPIHLQR+QYVAF T+LGL LCL WNI+AVTTAWIKGEGVKIW
Sbjct: 118 KNWPPFFPIIHHDIANEIPIHLQRIQYVAFTTFLGLVLCLFWNIIAVTTAWIKGEGVKIW 177

Query: 180 FLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFK 239
           FLA+IYFIAGVPGAY+LWYRPLYRAFR ESA+KFGWFFLFYL+H+GFCI A+VAPPIIFK
Sbjct: 178 FLAVIYFIAGVPGAYILWYRPLYRAFRNESALKFGWFFLFYLVHLGFCILAAVAPPIIFK 237

Query: 240 GKSLTGVLPAVDVMGDHALV 259
           GKS TG+L A+DV+GDHALV
Sbjct: 238 GKSFTGILSAIDVVGDHALV 257

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072518|gb|ACJ84619.1| unknown [Medicago truncatula]

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/259 (78%), Positives = 231/259 (89%), Gaps = 1/259 (0%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHE 60
           MAGRY+SNPFDEEEVNPFS+PA +GK+S QS + GG F+TTN  SVPPA NSRLSPL  E
Sbjct: 1   MAGRYESNPFDEEEVNPFSEPAAKGKTSSQSNYSGGAFYTTNPGSVPPAKNSRLSPLEPE 60

Query: 61  PAGFN-FERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEE 119
           PA +N +   A +DIPLDT+ DLKK+EKELQ+KEAELRRREQ+VRRKEEAAARAGIVLEE
Sbjct: 61  PADYNNYGFGATVDIPLDTSTDLKKREKELQSKEAELRRREQEVRRKEEAAARAGIVLEE 120

Query: 120 KNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIW 179
           KNWPPFFPIIHHDIANEIP+HLQ+LQYVAF TYLGL  CLLWN++AVT AWIKGEGVKIW
Sbjct: 121 KNWPPFFPIIHHDIANEIPVHLQKLQYVAFTTYLGLVACLLWNVIAVTAAWIKGEGVKIW 180

Query: 180 FLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFK 239
           FLAIIYFI+GVPGAYVLWYRPLYR FRTESA+KFGWFF+ YL+HIGFCI A+VAPPI+FK
Sbjct: 181 FLAIIYFISGVPGAYVLWYRPLYRVFRTESALKFGWFFMLYLVHIGFCILAAVAPPIVFK 240

Query: 240 GKSLTGVLPAVDVMGDHAL 258
           GKSLTG+L A+DV+ +  L
Sbjct: 241 GKSLTGILSAIDVIDNSTL 259

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808380|ref|NP_001242258.1| uncharacterized protein LOC100815455 [Glycine max] gi|255641198|gb|ACU20876.1| unknown [Glycine max]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/261 (75%), Positives = 218/261 (83%), Gaps = 22/261 (8%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHE 60
           MAGRY SNPFDEEEVNPFS+P                       SVP ATNSRL PL  E
Sbjct: 1   MAGRYGSNPFDEEEVNPFSNPG----------------------SVPAATNSRLPPLKPE 38

Query: 61  PAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEK 120
           P  +N+  DA +DIPLD++ DLKKKEKELQAKE ELR+REQ+VRRKEEAA+RAGIVLEEK
Sbjct: 39  PVDYNYGFDATVDIPLDSSMDLKKKEKELQAKETELRKREQEVRRKEEAASRAGIVLEEK 98

Query: 121 NWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWF 180
           NWPPFFPIIHHDIANEIPIHLQ+LQYVAF T LGL LCL WN++AVT AWIKGEGVKIWF
Sbjct: 99  NWPPFFPIIHHDIANEIPIHLQKLQYVAFTTLLGLVLCLFWNVIAVTAAWIKGEGVKIWF 158

Query: 181 LAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKG 240
           LAIIYFIAGVPGAYVLWYRPLYRAFR ESA+KFGWFFLFYLLHIGFCI A+VAPPI+FKG
Sbjct: 159 LAIIYFIAGVPGAYVLWYRPLYRAFRNESALKFGWFFLFYLLHIGFCILAAVAPPIVFKG 218

Query: 241 KSLTGVLPAVDVMGDHALVGV 261
           KSLTG+L A+DV+GDHAL+G+
Sbjct: 219 KSLTGILAAIDVLGDHALIGI 239

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124600|ref|XP_002319372.1| predicted protein [Populus trichocarpa] gi|222857748|gb|EEE95295.1| predicted protein [Populus trichocarpa]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/256 (76%), Positives = 223/256 (87%), Gaps = 5/256 (1%)

Query: 4   RYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHEPAG 63
           RYDSNPFDEEEVNPF+D   +GK SGQS +GGG F+  N  SVPPAT SRLSPLPHEP  
Sbjct: 3   RYDSNPFDEEEVNPFADQGGKGKGSGQSNYGGGAFYMPNPGSVPPAT-SRLSPLPHEP-- 59

Query: 64  FNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWP 123
             ++R A IDIPLD+  D+K KEKELQAKEAEL+RREQ+++RKE+A ARAGIV+E+KNWP
Sbjct: 60  --YDRGATIDIPLDSGKDIKAKEKELQAKEAELKRREQELKRKEDAIARAGIVIEDKNWP 117

Query: 124 PFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAI 183
           PFFPIIHHDI NEIPIHLQ++QYVAF T LGLF+CL WNI+AVTTAWIKGEG  IWFLAI
Sbjct: 118 PFFPIIHHDIGNEIPIHLQKMQYVAFTTLLGLFVCLSWNIIAVTTAWIKGEGPTIWFLAI 177

Query: 184 IYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSL 243
           IYFIAGVPG YV+WYRPLYRA RT+SA+KFGWFF  YL HIGFCIFA+VAPPI+FKGKSL
Sbjct: 178 IYFIAGVPGGYVMWYRPLYRAMRTDSALKFGWFFFAYLFHIGFCIFAAVAPPIVFKGKSL 237

Query: 244 TGVLPAVDVMGDHALV 259
            G+LPA+D+MG+HALV
Sbjct: 238 AGILPAIDLMGNHALV 253

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259490150|ref|NP_001158996.1| SC3 protein [Zea mays] gi|195624852|gb|ACG34256.1| SC3 protein [Zea mays] gi|224035591|gb|ACN36871.1| unknown [Zea mays] gi|414887137|tpg|DAA63151.1| TPA: SC3 protein [Zea mays]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 182/261 (69%), Positives = 227/261 (86%), Gaps = 5/261 (1%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHE 60
           MAGRYD NPF+EE+VNPFS+ A RGK+ GQS FGGG F+  N+ ++PPA+NSRLSPLP E
Sbjct: 1   MAGRYDGNPFEEEDVNPFSEQA-RGKAGGQSNFGGGAFYMPNTRNMPPASNSRLSPLPPE 59

Query: 61  PAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEK 120
           PA F+    A +DIPLD++ DLK++EKELQA+EAEL +RE++++R+EEAAARAGIV+EEK
Sbjct: 60  PADFS----ATVDIPLDSSKDLKRREKELQAREAELNKREKELKRREEAAARAGIVIEEK 115

Query: 121 NWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWF 180
           NWPPF P+IHHDI NEIP HLQR+QYVAFA++LGL  CL WN++AVTTAWIKGEGVKIW 
Sbjct: 116 NWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLVCCLFWNVIAVTTAWIKGEGVKIWL 175

Query: 181 LAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKG 240
           LAIIYFI+GVPGAYVLWYRPLY A RT+SA+KFG FFL Y+ HI FC+F++VAPP++F+G
Sbjct: 176 LAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLLYVFHILFCVFSAVAPPVVFEG 235

Query: 241 KSLTGVLPAVDVMGDHALVGV 261
           KSL G+LPA+D++  +ALVG+
Sbjct: 236 KSLAGILPAIDLISVNALVGI 256

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447239|ref|XP_002278442.1| PREDICTED: secretory carrier-associated membrane protein 3 [Vitis vinifera] gi|297739263|emb|CBI28914.3| unnamed protein product [Vitis vinifera]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/261 (72%), Positives = 216/261 (82%), Gaps = 25/261 (9%)

Query: 1   MAGRYDSNPFDEEEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHE 60
           MAGRY+SNPFDEE+VNPF++P                       SVPPA NSRLSPLP E
Sbjct: 1   MAGRYESNPFDEEDVNPFANPG----------------------SVPPAANSRLSPLPPE 38

Query: 61  PAGFNFERDAPIDIPLDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEK 120
           PAG+   R A +DIPLD A D K KE+ELQAKEAEL++REQ+++R+E+A ARAGIV+EEK
Sbjct: 39  PAGY---RGATVDIPLDGAKDTKAKERELQAKEAELKKREQELKRREDAVARAGIVIEEK 95

Query: 121 NWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWF 180
           NWPPFFP+IHHDIANEIPIH Q+LQYVAF TYLGL LCL WNIVAVTTAWIKGEG  IWF
Sbjct: 96  NWPPFFPLIHHDIANEIPIHQQKLQYVAFTTYLGLVLCLTWNIVAVTTAWIKGEGPTIWF 155

Query: 181 LAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKG 240
           LAIIYF++GVPGAYVLWYRPLYRA RT+SA+KFGWFFLFYLLHI FCIFASVAPPI+FKG
Sbjct: 156 LAIIYFLSGVPGAYVLWYRPLYRAMRTDSALKFGWFFLFYLLHIAFCIFASVAPPIVFKG 215

Query: 241 KSLTGVLPAVDVMGDHALVGV 261
           KSLTG+LPAVD++  HALVG+
Sbjct: 216 KSLTGILPAVDLLSKHALVGI 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
TAIR|locus:2008465	289	SC3 "secretory carrier 3" [Ara	0.808	0.761	0.681	6.2e-91
TAIR|locus:2051409	282	SCAMP3 "Secretory carrier memb	0.790	0.762	0.668	7.3e-84
UNIPROTKB|Q8H5X5	306	SCAMP1 "Secretory carrier-asso	0.941	0.836	0.591	3.1e-83
TAIR|locus:2020828	283	SCAMP4 "Secretory carrier memb	0.794	0.763	0.618	5.9e-78
TAIR|locus:2195371	264	SCAMP5 "Secretory carrier memb	0.757	0.780	0.548	2e-67
ZFIN|ZDB-GENE-040426-2702	326	scamp2 "secretory carrier memb	0.893	0.745	0.283	2.7e-20
ZFIN|ZDB-GENE-030131-6432	325	scamp2l "secretory carrier mem	0.555	0.464	0.333	4.2e-20
UNIPROTKB|O15127	329	SCAMP2 "Secretory carrier-asso	0.893	0.738	0.265	3.1e-19
MGI|MGI:1346518	329	Scamp2 "secretory carrier memb	0.875	0.723	0.263	1.1e-18
UNIPROTKB|F1SJ46	328	SCAMP2 "Uncharacterized protei	0.900	0.746	0.265	1.4e-18

TAIR|locus:2008465 SC3 "secretory carrier 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 848 (303.6 bits), Expect = 6.2e-91, Sum P(2) = 6.2e-91
 Identities = 150/220 (68%), Positives = 176/220 (80%)

Query:    42 NSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQ 101
             N+  VPPA+NSRLSPLP EP GF++ R   I +                      +RREQ
Sbjct:    21 NARGVPPASNSRLSPLPPEPVGFDYGRTVDIPLDRAGTQDLKKKEKELQAKEAELKRREQ 80

Query:   102 DVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLW 161
             D++RKE+AAARAGIV+E KNWPPFFP+IHHDIANEIP+HLQRLQYV FATYLGL LCL W
Sbjct:    81 DLKRKEDAAARAGIVIEVKNWPPFFPLIHHDIANEIPVHLQRLQYVTFATYLGLVLCLFW 140

Query:   162 NIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYL 221
             NI+AVTTAWIKGEGV IW LA+IYFIAGVPG YVLWYRPLYRAFRT+SA+ FGWFFLFY+
Sbjct:   141 NIIAVTTAWIKGEGVTIWLLALIYFIAGVPGGYVLWYRPLYRAFRTDSALSFGWFFLFYM 200

Query:   222 LHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGV 261
             LHI FC+FA+VAPP++FKGKSL G+LPA+DV+   A+VG+
Sbjct:   201 LHIAFCVFAAVAPPVVFKGKSLAGILPAIDVLSGQAIVGI 240

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2051409 SCAMP3 "Secretory carrier membrane protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 795 (284.9 bits), Expect = 7.3e-84, Sum P(2) = 7.3e-84
 Identities = 147/220 (66%), Positives = 174/220 (79%)

Query:    42 NSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQ 101
             N  SVP AT S+LSPLP EP    ++R A +DIP                     +RREQ
Sbjct:    19 NPTSVPAAT-SKLSPLPPEP----YDRGATMDIPLDSGKDLKAKEKELREKEAELKRREQ 73

Query:   102 DVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLW 161
             +++RKE+A A+AGIV+EEKNWPPFFP+IHHDI+NEIPIHLQR+QYVAF + LGL +CLLW
Sbjct:    74 EIKRKEDAIAQAGIVIEEKNWPPFFPLIHHDISNEIPIHLQRIQYVAFTSMLGLVVCLLW 133

Query:   162 NIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYL 221
             NIVAVTTAWIKGEG  IWFLAIIYFI+GVPGAYV+WYRPLYRA RT+SA+KFGWFF  YL
Sbjct:   134 NIVAVTTAWIKGEGPTIWFLAIIYFISGVPGAYVMWYRPLYRAMRTDSALKFGWFFFTYL 193

Query:   222 LHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGV 261
              HI FC+FA+VAPPIIFKGKSLTG+LPA+DV+  + LVG+
Sbjct:   194 FHIAFCVFAAVAPPIIFKGKSLTGILPAIDVLSGNILVGI 233

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=ISS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

UNIPROTKB|Q8H5X5 SCAMP1 "Secretory carrier-associated membrane protein 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 834 (298.6 bits), Expect = 3.1e-83, P = 3.1e-83
 Identities = 155/262 (59%), Positives = 193/262 (73%)

Query:     1 MAGRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPP-ATNSRLSPLPH 59
             MAGRYDSNPF+E++VNPFS+ A R                 N  +VP  ++NSRLSPLP 
Sbjct:     1 MAGRYDSNPFEEDDVNPFSEQA-RGKAGGQPSYGGGAFYMPNPRNVPSVSSNSRLSPLPP 59

Query:    60 EPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEE 119
             EPA F     A +DIP                      +RE++++R+EEAAARAGIV+EE
Sbjct:    60 EPAAFG----ATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEE 115

Query:   120 KNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIW 179
             KNWPPF P+IHHDI NEIP HLQR+QYVAFA++LGL  CL WN++AVT+AW+KGEGVKIW
Sbjct:   116 KNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIW 175

Query:   180 FLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFK 239
              LAIIYFI+GVPGAYVLWYRPLY A RT+SA+KFG FFL YL HI FC+F++VAPP++F+
Sbjct:   176 LLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCVFSAVAPPVVFE 235

Query:   240 GKSLTGVLPAVDVMGDHALVGV 261
             GKSL G+LPA+D++  +ALVG+
Sbjct:   236 GKSLAGILPAIDLISKNALVGI 257

GO:0005769 "early endosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006897 "endocytosis" evidence=ISS

GO:0006898 "receptor-mediated endocytosis" evidence=ISS

TAIR|locus:2020828 SCAMP4 "Secretory carrier membrane protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 738 (264.8 bits), Expect = 5.9e-78, Sum P(2) = 5.9e-78
 Identities = 136/220 (61%), Positives = 166/220 (75%)

Query:    42 NSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQ 101
             N  SVPPA+NS L PLP EP    ++R A +DIP                     +R+EQ
Sbjct:    19 NHTSVPPASNSYLKPLPPEP----YDRGATVDIPLDSGNDLRAKEMELQAKENELKRKEQ 74

Query:   102 DVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLW 161
             +++R+E+A AR G+V+EEKNWP FFP+IHHDI NEIPIHLQ++QYVAF T LGL  CLLW
Sbjct:    75 ELKRREDAIARTGVVIEEKNWPEFFPLIHHDIPNEIPIHLQKIQYVAFTTLLGLVGCLLW 134

Query:   162 NIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYL 221
             NIVAVT AWIKGEG  IW L+IIYF+AGVPGAYVLWYRPLYRA RT+SA+KFG FF FY+
Sbjct:   135 NIVAVTVAWIKGEGPTIWLLSIIYFLAGVPGAYVLWYRPLYRATRTDSALKFGAFFFFYV 194

Query:   222 LHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGV 261
              HI FC FA+VAPP+IF+GKSLTG LPA++++  +A VG+
Sbjct:   195 FHIAFCGFAAVAPPVIFQGKSLTGFLPAIELLTTNAAVGI 234

GO:0005886 "plasma membrane" evidence=ISM

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=ISS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2195371 SCAMP5 "Secretory carrier membrane protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 642 (231.1 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
 Identities = 113/206 (54%), Positives = 146/206 (70%)

Query:    56 PLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGI 115
             P    P  +    DA +DIP                     R++E D++R+EEA A+ G+
Sbjct:    28 PAASRPVEYGQSLDATVDIPLDNMNDSSQKQRKLADWEAELRKKEMDIKRREEAIAKFGV 87

Query:   116 VLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEG 175
              +++KNWPPFFPIIHHDIA EIP+H Q+LQY+AFA++LG+ LCL++N++A    WIKG G
Sbjct:    88 QIDDKNWPPFFPIIHHDIAKEIPVHAQKLQYLAFASWLGIVLCLVFNVIATMVCWIKGGG 147

Query:   176 VKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPP 235
             VKI+FLA IY + G P +YVLWYRPLYRA RT+SA+KFGWFF  YL+HIGFCI A++APP
Sbjct:   148 VKIFFLATIYALIGCPLSYVLWYRPLYRAMRTDSALKFGWFFFTYLIHIGFCIVAAIAPP 207

Query:   236 IIFKGKSLTGVLPAVDVMGDHALVGV 261
             I F GKSLTGVL A+DV+ D  L G+
Sbjct:   208 IFFHGKSLTGVLAAIDVISDSLLAGI 233

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

ZFIN|ZDB-GENE-040426-2702 scamp2 "secretory carrier membrane protein 2" [Danio rerio (taxid:7955)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 77/272 (28%), Positives = 122/272 (44%)

Query:     1 MAGRYDSNPF-DEEEVNPFSDPAVRXXXXXXXXXXXXXXXTT--NSASVPPATNSRLSPL 57
             M+G +DSNPF D  +VNPF DP+V                    N  S  PA+++     
Sbjct:     1 MSG-FDSNPFADPVDVNPFQDPSVTQVTNSGVDHIESFSPFPDGNQGSTIPASSA----- 54

Query:    58 PHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVL 117
             P +PA        P   P                     R+  +  RR++E  +R     
Sbjct:    55 PTQPAVLQ-----PSVEPSPQATAAAAQASLIKQQEELERKAAELERREQELQSRGAPTG 109

Query:   118 EEKNWPPF---FPI---IHHDIANEIPIHLQRLQYVAFATYLGLFLC--LLWNIVAVTTA 169
             ++ NWPP    FPI    + D + EIP   QRL  + +  YL ++ C  L  N++A    
Sbjct:   110 KQNNWPPLPKRFPIQPCFYQDFSEEIPQEHQRLCKMIY--YLWMWECVTLFLNVLACLAD 167

Query:   170 WIKGEGVKIWF-LAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCI 228
             +       + F L+I++FI   P +++ W+RP+Y+AFR++S+  F +FF  +   I   +
Sbjct:   168 FTTNSEAGVDFGLSILWFILFAPCSFICWFRPVYKAFRSDSSFNFFFFFFVFFAQIVISV 227

Query:   229 FASVAPPIIFKGKSLTGVLPAVDVMGDHALVG 260
               +V  P    G S  G + A+ V+G +  VG
Sbjct:   228 IQAVGIPKW--GNS--GWISAISVIGSNKAVG 255

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

ZFIN|ZDB-GENE-030131-6432 scamp2l "secretory carrier membrane protein 2, like" [Danio rerio (taxid:7955)]

 Score = 190 (71.9 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
 Identities = 58/174 (33%), Positives = 90/174 (51%)

Query:    98 RREQDVRRKEEAAARAGIVLEEKNWPP---FFPI---IHHDIANEIPIHLQR----LQYV 147
             R+EQ++R ++  AAR     +E NWPP   F PI    + D   EIP+  QR    + Y+
Sbjct:    97 RKEQELRDRD--AARG----KENNWPPLPKFLPIKPCFYQDFNEEIPVEYQRVCKMMYYL 150

Query:   148 AFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRT 207
                  + LFL LL  +V  T +     GV    L+I++FI   P A+V WYRP+Y+AF++
Sbjct:   151 WMYHSVTLFLNLLACLVYFTVS--TQNGVDFG-LSILWFILFTPVAFVCWYRPVYKAFKS 207

Query:   208 ESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGV 261
             +S+  F +FF  +   +   I  SV  P    G   +G + A+ V+  +  + V
Sbjct:   208 DSSFSFFFFFFIFSFQVIVYIIQSVGIP----GWGNSGWITAISVIKTNIALSV 257

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|O15127 SCAMP2 "Secretory carrier-associated membrane protein 2" [Homo sapiens (taxid:9606)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 71/267 (26%), Positives = 115/267 (43%)

Query:     5 YDSNPF-DEEEVNPFSDPAVRXXXXXXXXXXXXXX--XTTNSASVPPATNSRLSPLPHEP 61
             +D+NPF D  +VNPF DP+V                   TN+A+  P T     P   +P
Sbjct:     4 FDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQL---PGSSQP 60

Query:    62 AGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAAR--AGIVLEE 119
             A      +     P                      R+  ++ RKE       A + + +
Sbjct:    61 AVLQPSVEPTQPTPQAVVSAAQAGLLRQQEELD---RKAAELERKERELQNTVANLHVRQ 117

Query:   120 KNWPPF------FPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKG 173
              NWPP        P  + D + EIP   QR+  + +  ++   + L  N++A   AW  G
Sbjct:   118 NNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACL-AWFSG 176

Query:   174 EGVK-IWF-LAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFAS 231
                K + F L+I++F+   P A++ WYRP+Y+AFR++++  F  FF  +   IG  I   
Sbjct:   177 NSSKGVDFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYIIQL 236

Query:   232 VAPPIIFKGKSLTGVLPAVDVMGDHAL 258
             V  P    G   +G + A+  + +H+L
Sbjct:   237 VGIP----GLGDSGWIAALSTLDNHSL 259

GO:0032588 "trans-Golgi network membrane" evidence=IDA

GO:0055038 "recycling endosome membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

GO:0015031 "protein transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

MGI|MGI:1346518 Scamp2 "secretory carrier membrane protein 2" [Mus musculus (taxid:10090)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 69/262 (26%), Positives = 112/262 (42%)

Query:     5 YDSNPF-DEEEVNPFSDPAVRXXXXXXXXXXXXXX--XTTNSASVPPATNSRLSPLPHEP 61
             +D+NPF D  +VNPF DP+V                   TN+A+  PAT +   P P +P
Sbjct:     4 FDTNPFADPVDVNPFQDPSVTQLTNAPQSGLAEFNPFSETNAATTVPATQA---PGPSQP 60

Query:    62 AGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAAR--AGIVLEE 119
             A      +     P                      R+  ++ RKE       A + + +
Sbjct:    61 AVLQPSVEPAQPTPQAVAAAAQAGLLRQQEELD---RKAAELERKERELQNTAANLHVRD 117

Query:   120 KNWPPF------FPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKG 173
              NWPP        P  + D + EIP   QR+  + +  ++   + L  N++A   AW   
Sbjct:   118 NNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACL-AWFTS 176

Query:   174 EGVK--IWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFAS 231
             +      + L+I++F+   P A++ WYRP+Y+AFR++++  F  FF  +   IG      
Sbjct:   177 DAANGTAFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYFIQL 236

Query:   232 VAPPIIFKGKSLTGVLPAVDVM 253
             +  P +  G S  G L A+  M
Sbjct:   237 IGLPNL--GTS--GWLAALSTM 254

GO:0005768 "endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0030133 "transport vesicle" evidence=ISO

GO:0032588 "trans-Golgi network membrane" evidence=ISO

GO:0055038 "recycling endosome membrane" evidence=ISO

UNIPROTKB|F1SJ46 SCAMP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 72/271 (26%), Positives = 114/271 (42%)

Query:     5 YDSNPF-DEEEVNPFSDPAVRXXXXXXXXXXXXXX--XTTNSASVPPATNSRLSPLPHEP 61
             +D+NPF D  +VNPF DP+V                   TN+A+  P T     P P +P
Sbjct:     4 FDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQL---PGPSQP 60

Query:    62 AGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAAR--AGIVLEE 119
             A      +     P                      R+  ++ RKE       A + + E
Sbjct:    61 AVLQPSVEPTQPTPQAVASAAQASLLRQQEELD---RKAAELERKERELQNTVANLHVRE 117

Query:   120 KNWPPF------FPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWI-- 171
              NWPP        P  + D + EIP   QR+  + +  ++   + L  N++A   AW   
Sbjct:   118 NNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACL-AWFLV 176

Query:   172 -KGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFA 230
                 GV    L+I++F+   P A++ WYRP+Y+AFR++++  F  FF  +   IG  I  
Sbjct:   177 DTSRGVDFG-LSILWFVIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYIIQ 235

Query:   231 SVAPPIIFKGKSLTGVLPAVDVMGDHALVGV 261
              V  P +  G S  G + A+  + +   V +
Sbjct:   236 LVGIPSL--GDS--GWIAALSTLKEDLAVSI 262

GO:0055038 "recycling endosome membrane" evidence=IEA

GO:0032588 "trans-Golgi network membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZTX0	SCAM_PEA	No assigned EC number	0.7027	0.8713	0.8200	N/A	no
A2YMP7	SCAM1_ORYSI	No assigned EC number	0.6793	0.9411	0.8366	N/A	no
Q8H5X5	SCAM1_ORYSJ	No assigned EC number	0.6793	0.9411	0.8366	yes	no
Q9M5P2	SCAM3_ARATH	No assigned EC number	0.7045	0.8713	0.8200	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XIII0422 hypothetical protein (304 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	272
pfam04144	177	pfam04144, SCAMP, SCAMP family	2e-65
pfam12072	201	pfam12072, DUF3552, Domain of unknown function (DU	5e-04
pfam13025	70	pfam13025, DUF3886, Protein of unknown function (D	0.001

>gnl|CDD|190882 pfam04144, SCAMP, SCAMP family

 Score =  201 bits (513), Expect = 2e-65
 Identities = 63/150 (42%), Positives = 87/150 (58%), Gaps = 10/150 (6%)

Query: 118 EEKNWPPFF------PIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWI 171
            E NWPP        P  +HDI+ EIP+  QRL Y  +  +LGL L L +NI+A    +I
Sbjct: 1   RENNWPPLPSFCPVKPCFYHDISEEIPVEYQRLVYFLYYLWLGLVLTLFYNIIACLALFI 60

Query: 172 KGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFAS 231
            G G   + L+I+YFI G PG++V WYRP+Y+AFRT+S+  F WFF  + LHI FCI  +
Sbjct: 61  GGGGGTDFGLSILYFILGTPGSFVCWYRPVYKAFRTDSSFNFFWFFFIFFLHILFCIIQA 120

Query: 232 VAPPIIFKGKSLTGVLPAVDVMGDHALVGV 261
           V  P       L G + A+ +   +  VG+
Sbjct: 121 VGIPGW----GLCGWITAISLFSTNVAVGI 146

In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences. Length = 177

>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552)

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 80  ADLKKKEKELQAKEAELRRREQDVRRKEE 108
             L+KKE+ L+ KE EL  R+Q +  KEE
Sbjct: 99  ESLEKKEESLEEKEKELAARQQQLEEKEE 127

This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with pfam00013, pfam01966. This domain has a single completely conserved residue A that may be functionally important. Length = 201

>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886)

 Score = 36.2 bits (84), Expect = 0.001
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 7/45 (15%)

Query: 77  DTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKN 121
           D  A LK K+KEL+A+E + R  E++ R++EE   R      EKN
Sbjct: 17  DLLAKLKAKKKELKAEEEK-REEEEEARKREERKER------EKN 54

This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There are two completely conserved L residues that may be functionally important. Length = 70

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	272
KOG3088	313	consensus Secretory carrier membrane protein [Intr	100.0
PF04144	177	SCAMP: SCAMP family; InterPro: IPR007273 In verteb	100.0
KOG3088	313	consensus Secretory carrier membrane protein [Intr	99.38
PF05915	115	DUF872: Eukaryotic protein of unknown function (DU	80.67

>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.2e-90  Score=628.46  Aligned_cols=242  Identities=52%  Similarity=0.918  Sum_probs=220.8

Q ss_pred             CCCCCCCCCCCC-cCCCCCCCccccccCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCccc-
Q 024136            1 MAGRYDSNPFDE-EEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPLDT-   78 (272)
Q Consensus         1 M~~~~d~nPf~~-~~~NPF~dp~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~-   78 (272)
                      |+ +||+|||+| +++|||+||+|+|+.++                      +.++|.+++++.+  +.++|+++|.+. 
T Consensus         1 ~s-~~d~NPFadp~~~NPF~dp~~~q~~~~----------------------~~~~p~~~~~~~~--~~~~tv~~P~~~~   55 (313)
T KOG3088|consen    1 MS-RYDPNPFAEPELVNPFADPAVVQPAST----------------------PPLSPLPPEPAPS--DQGPTVDIPLDSP   55 (313)
T ss_pred             CC-CCCCCCCCCcccCCCCCCccccCCccC----------------------CCCCCCCCCCCCC--CCCCccccCCCCC
Confidence            66 999999999 88999999999987333                      2233343344322  245677777776 


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCC------CCCccccccccccchhhHHHHHHHHH
Q 024136           79 ---AADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWP------PFFPIIHHDIANEIPIHLQRLQYVAF  149 (272)
Q Consensus        79 ---~~el~~ke~EL~~rE~EL~rRE~el~~re~~~~~~g~~~~~~NwP------pf~P~~y~DI~~eIP~~~q~~v~~~y  149 (272)
                         .+|+++||+||.||||||+|||+||+|||++++++|..+++||||      |++|||||||++|||+|+||+||++|
T Consensus        56 ~~~a~~~~~kq~eL~~rqeEL~Rke~ELdRREr~~a~~g~~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~y  135 (313)
T KOG3088|consen   56 STQAKDLAKKQAELLKKQEELRRKEQELDRRERALARAGIVIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAY  135 (313)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCcccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHH
Confidence               789999999999999999999999999999999999999999999      57899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhhhhhhHhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHh
Q 024136          150 ATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIF  229 (272)
Q Consensus       150 ~~wl~~~~~L~~N~i~~~~~~i~g~~~~~f~laily~l~g~P~sf~~WYrplY~A~r~dss~~f~~FF~~~~~~i~f~v~  229 (272)
                      |+||++++||+||+++|+++||+|+++.+|+|||||+++|+||||+|||||||||||+||||+|+||||+|++|++|||+
T Consensus       136 ylwm~~~~tL~~Niia~la~~i~g~~~~~f~Laii~fllftPcsyVcWyRPlYkAFRsDSSf~F~~FFF~y~~q~~~~v~  215 (313)
T KOG3088|consen  136 YLWMGLVLTLLWNIIACLAWWIKGGGGTIFGLAIIWFLLFTPCSYVCWYRPLYKAFRTDSSFNFGAFFFTYFFQIVFCVF  215 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhCCceeeEeehHHHHHhccccchhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCccccCCcceehHHHHHhhcCCceeeeeeeecccccc
Q 024136          230 ASVAPPIIFKGKSLTGVLPAVDVMGDHALVGVRILQPNLTFL  271 (272)
Q Consensus       230 ~aIG~P~~~~g~g~~G~I~ai~~~~~~~~vgi~~~i~a~~~~  271 (272)
                      +|||++    |||.||||.||+.++.+.+|||+|+|+|++|.
T Consensus       216 qAvgf~----g~~~~G~i~ai~~~~~~i~v~i~m~i~a~~Ft  253 (313)
T KOG3088|consen  216 QAVGFP----GWGLCGWIPAIDVLSGNIAVGILMLIGAGLFT  253 (313)
T ss_pred             HHHccC----CcchhhhhhHhhccCcchHHHHHHHHHHHHHH
Confidence            999955    99999999999999999999999999999873

>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail

Probab=100.00  E-value=1.7e-53  Score=370.39  Aligned_cols=150  Identities=41%  Similarity=0.830  Sum_probs=145.2

Q ss_pred             CcCCCCCCC------ccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhh
Q 024136          118 EEKNWPPFF------PIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVP  191 (272)
Q Consensus       118 ~~~NwPpf~------P~~y~DI~~eIP~~~q~~v~~~y~~wl~~~~~L~~N~i~~~~~~i~g~~~~~f~laily~l~g~P  191 (272)
                      |+|||||++      ||+||||++|||+++||+||++|++||++++||++|+++|++.++.|+++++|+||++|+++|+|
T Consensus         1 ~~~NwPp~~~~~~~~P~~y~di~~eIP~~~q~~v~~~y~~w~~~~~~l~~N~i~~~~~~~~~~~~~~~~lai~y~~~~~P   80 (177)
T PF04144_consen    1 RENNWPPFPKFCCIKPCFYHDISEEIPEEFQRLVKRAYYLWLFLAITLFWNFIACLALLIAGGSGSDFGLAILYLLLGTP   80 (177)
T ss_pred             CCCCCCCCccccCCCCeEEeCHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHhH
Confidence            579999999      99999999999999999999999999999999999999999999877778899999999999999


Q ss_pred             hhhhHhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhhccCCccccCCcceehHHHHHhhcCCceeeeeeeecccccc
Q 024136          192 GAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGVRILQPNLTFL  271 (272)
Q Consensus       192 ~sf~~WYrplY~A~r~dss~~f~~FF~~~~~~i~f~v~~aIG~P~~~~g~g~~G~I~ai~~~~~~~~vgi~~~i~a~~~~  271 (272)
                      +||+|||||||||+|+|||++|++||+++++|++||++++||+|    ++|+||||+||+++++|+.+||+++|++++|.
T Consensus        81 ~sf~~wyrplY~A~r~dss~~f~~ff~~~~~~i~f~i~~aIG~p----~~G~~G~i~ai~~~~~~~~vgi~~~I~a~~w~  156 (177)
T PF04144_consen   81 ASFFCWYRPLYKAFRTDSSFRFMWFFFFFFVHIIFCIIMAIGIP----GWGSCGWITAIDVFSNNKAVGILMLIVAILWT  156 (177)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhccc----cccHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999    89999999999999999999999999998873

SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane

>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.38  E-value=2.3e-12  Score=119.14  Aligned_cols=86  Identities=28%  Similarity=0.422  Sum_probs=68.1

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc---CCCCCCCccccccccccchhhHHHHH--HHHHH
Q 024136           76 LDTAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEE---KNWPPFFPIIHHDIANEIPIHLQRLQ--YVAFA  150 (272)
Q Consensus        76 ~~~~~el~~ke~EL~~rE~EL~rRE~el~~re~~~~~~g~~~~~---~NwPpf~P~~y~DI~~eIP~~~q~~v--~~~y~  150 (272)
                      ..+++||+||||||+|||+||+|||+++++-..+.+..||++.+   +-.|=||--|-.||.+|..+-..++.  +++|.
T Consensus        63 ~~kq~eL~~rqeEL~Rke~ELdRREr~~a~~g~~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~yylwm~~~  142 (313)
T KOG3088|consen   63 AKKQAELLKKQEELRRKEQELDRRERALARAGIVIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAYYLWMGLV  142 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCcccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHHHHHHHHH
Confidence            34789999999999999999999999999866677788999776   46777899999999999988777665  44454


Q ss_pred             HHHH--HHHHHHH
Q 024136          151 TYLG--LFLCLLW  161 (272)
Q Consensus       151 ~wl~--~~~~L~~  161 (272)
                      +-|+  ...||.|
T Consensus       143 ~tL~~Niia~la~  155 (313)
T KOG3088|consen  143 LTLLWNIIACLAW  155 (313)
T ss_pred             HHHHHHHHHHHHH
Confidence            4333  3455555

>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins

Probab=80.67  E-value=11  Score=31.05  Aligned_cols=69  Identities=20%  Similarity=0.274  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHhhhhhhhhHhhHHHHHHhhcccchhH
Q 024136          142 QRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKF  213 (272)
Q Consensus       142 q~~v~~~y~~wl~~~~~L~~N~i~~~~~~i~g~~~~~f~laily~l~g~P~sf~~WYrplY~A~r~dss~~f  213 (272)
                      .|.+-.+..+.++-++.+++.++.. +--+.+.....+.+-++=+++++|+.|.+  |-+|.|.|--..+.|
T Consensus        41 wK~I~la~~Lli~G~~li~~g~l~~-~~~i~~~~~~~~~llilG~L~fIPG~Y~~--~i~y~a~rg~~Gysf  109 (115)
T PF05915_consen   41 WKSIALAVFLLIFGTVLIIIGLLLF-FGHIDGDRDRGWALLILGILCFIPGFYHT--RIAYYAWRGYKGYSF  109 (115)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hcccCCCCcccchHHHHHHHHHhccHHHH--HHHHHHHcCCCCCCH
Confidence            4444555444443333333332221 11123444556777777778999999987  577888886555443

The function of this currently unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	272
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	91.81

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=91.81  E-value=0.31  Score=35.99  Aligned_cols=32  Identities=25%  Similarity=0.371  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024136           80 ADLKKKEKELQAKEAELRRREQDVRRKEEAAA  111 (272)
Q Consensus        80 ~el~~ke~EL~~rE~EL~rRE~el~~re~~~~  111 (272)
                      ..|++|.+||..|++.+++.|.+|..++..++
T Consensus        26 ~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~   57 (72)
T 3nmd_A           26 YALQEKIEELRQRDALIDELELELDQKDELIQ   57 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677777787777777777777776665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00