Citrus Sinensis ID: 024151

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
MSDALINGLAGAGGGIIAQLITYPLQTVNARQQTERDVKKEKRKLGTVAQMCQVVKHEGWGRLYGGLTPSIVGTAASQGVYYYFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQTHTKTLKKSKPCRSELTSSEKSSHATVEPPPFATSHAIQEVYDEAGLWGFWRGVFPTLIMVSNPSIQFMLYETMLKKIKERRALRKKDNSGVTALEVTFWFCFLSPPFFNPSILNSVLGAPILFSTPLKLF
ccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccc
ccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccHHHHccccHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHccccccHcccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccc
MSDALINGLAGAGGGIIAQLITYPLQTVNARQQTERDVKKEKRKLGTVAQMCQVVKHegwgrlyggltpsivgtaasQGVYYYFYQIFRNNAEVAALEhkkrgigdgsvGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQThtktlkkskpcrseltsseksshatvepppfatshAIQEVYDeaglwgfwrgvfptlimvsnpsiQFMLYETMLKKIKERRAlrkkdnsgvtaLEVTFWFcflsppffnpsilnsvlgapilfstplklf
MSDALINGLAGAGGGIIAQLITYPLQTVNARQQTERDVKKEKRKLGTVAQMCQVVKHEGWGRLYGGLTPSIVGTAASQGVYYYFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQthtktlkkskpcrseltsseksshatvepppFATSHAIQEVYDEAGLWGFWRGVFPTLIMVSNPSIQFMLYETMLKKIKERralrkkdnsgvtALEVTFWFCFLSPPFFNPSILNSVLGAPILFSTPLKLF
MSDalinglagagggiiaqliTYPLQTVNARQQTERDVKKEKRKLGTVAQMCQVVKHEGWGRLYGGLTPSIVGTAASQGVYYYFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQTHTKTLKKSKPCRSELTSSEKSSHATVEPPPFATSHAIQEVYDEAGLWGFWRGVFPTLIMVSNPSIQFMLYETMLKKIKERRALRKKDNSGVTALEVTFWFCFLSPPFFNPSILNSVLGAPILFSTPLKLF
****LINGLAGAGGGIIAQLITYPLQTVNA*************KLGTVAQMCQVVKHEGWGRLYGGLTPSIVGTAASQGVYYYFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQT**********************************HAIQEVYDEAGLWGFWRGVFPTLIMVSNPSIQFMLYETMLKKIKERRALRKKDNSGVTALEVTFWFCFLSPPFFNPSILNSVLGAPILFST*****
*SDALINGLAGAGGGIIAQLITYPLQTVNAR*****************AQMCQVVKHEGWGRLYGGLTPSIVGTAASQGVYYYFYQIFRNNAEVAA*************GMLSSLVVAALAGCVNVLLTNPIWVVVTRM***************************VEPPPFATSHAIQEVYDEAGLWGFWRGVFPTLIMVSNPSIQFMLYETMLKKI******************VTFWFCFLSPPFFNPSILNSVLGAPILFSTPLKLF
MSDALINGLAGAGGGIIAQLITYPLQTVN**************KLGTVAQMCQVVKHEGWGRLYGGLTPSIVGTAASQGVYYYFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQ****************************PPPFATSHAIQEVYDEAGLWGFWRGVFPTLIMVSNPSIQFMLYETMLKKIKERRALRKKDNSGVTALEVTFWFCFLSPPFFNPSILNSVLGAPILFSTPLKLF
MSDALINGLAGAGGGIIAQLITYPLQTVNARQQTERDVKKEKRKLGTVAQMCQVVKHEGWGRLYGGLTPSIVGTAASQGVYYYFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQTHTK***********************EPPPFATSHAIQEVYDEAGLWGFWRGVFPTLIMVSNPSIQFMLYETMLKKIKERRALRKKDNSGVTALEVTFWFCFLSPPFFNPSILNSVLG**IL**T*****
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
ooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooo
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MSDALINGLAGAGGGIIAQLITYPLQTVNARQQTERDVKKEKRKLGTVAQMCQVVKHEGWGRLYGGLTPSIVGTAASQGVYYYFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQTHTKTLKKSKPCRSELTSSEKSSHATVEPPPFATSHAIQEVYDEAGLWGFWRGVFPTLIMVSNPSIQFMLYETMLKKIKERRALRKKDNSGVTALEVTFWFCFLSPPFFNPSILNSVLGAPILFSTPLKLF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query271 2.2.26 [Sep-21-2011]
O04200331 Peroxisomal nicotinamide yes no 0.859 0.703 0.711 2e-87
O70579307 Peroxisomal membrane prot yes no 0.693 0.612 0.297 8e-21
Q76P23329 Mitochondrial substrate c yes no 0.693 0.571 0.303 3e-20
O43808307 Peroxisomal membrane prot yes no 0.693 0.612 0.297 1e-19
P21245 423 Peroxisomal membrane prot N/A no 0.726 0.465 0.288 5e-19
Q00319 419 Peroxisomal membrane prot N/A no 0.715 0.463 0.265 8e-16
Q7XA87308 Folate transporter 1, chl no no 0.719 0.633 0.287 7e-15
Q6DG32311 Solute carrier family 25 no no 0.712 0.620 0.257 7e-15
Q8BMG8316 Mitochondrial folate tran no no 0.745 0.639 0.252 8e-14
Q9H2D1315 Mitochondrial folate tran no no 0.745 0.641 0.265 1e-13
>sp|O04200|PXN_ARATH Peroxisomal nicotinamide adenine dinucleotide carrier OS=Arabidopsis thaliana GN=PXN PE=1 SV=1 Back     alignment and function desciption
 Score =  322 bits (824), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 168/236 (71%), Positives = 194/236 (82%), Gaps = 3/236 (1%)

Query: 1   MSDALINGLAGAGGGIIAQLITYPLQTVNARQQTERDVKKEKRKLGTVAQMCQVVKHEGW 60
           MSDALINGLAGAGGGIIAQL+TYPLQTVN RQQTERD+K+EKRKLGT+  MCQVVK EGW
Sbjct: 1   MSDALINGLAGAGGGIIAQLLTYPLQTVNTRQQTERDLKREKRKLGTIEHMCQVVKQEGW 60

Query: 61  GRLYGGLTPSIVGTAASQGVYYYFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAAL 120
            RLYGGL PS+ GTAASQGVYYYFYQ+FRN AE  AL  KK+G+GDGSVGM +SL+VAA 
Sbjct: 61  ERLYGGLAPSLAGTAASQGVYYYFYQVFRNRAEATALARKKKGLGDGSVGMFASLLVAAF 120

Query: 121 AGCVNVLLTNPIWVVVTRMQTHTKTLKKSKPCRSELTSSEKSSHATVEPPPFATSHAIQE 180
           AG VNVL+TNPIWV+VTRMQTH K + K +    E  SS   +   VEP P+ T + I+E
Sbjct: 121 AGSVNVLMTNPIWVIVTRMQTHRK-MTKDQTAAPESPSSNAEALVAVEPRPYGTFNTIRE 179

Query: 181 VYDEAGLWGFWRGVFPTLIMVSNPSIQFMLYETMLKKIKERRALRKKDNSGVTALE 236
           VYDEAG+ GFW+GV PTLIMVSNPS+QFMLYETML K+K++RAL+  +N  VTALE
Sbjct: 180 VYDEAGITGFWKGVIPTLIMVSNPSMQFMLYETMLTKLKKKRALKGSNN--VTALE 233
Mediates the NAD(+) import into peroxisomes. Favors the NAD(+)(in)/AMP(out) antiport exchange, but is also able to catalyze a low unidirectional transport that might be essential under special conditions. Transports CoA, dephospho-CoA, acetyl-CoA, adenosine 3',5'-diphosphate (PAP), NAD(+), AMP, ADP and NADH, but has no activity with ATP, GTP, GDP, NADPH, NADP(+) or FAD. Required for peroxisomes proliferation.
Arabidopsis thaliana (taxid: 3702)
>sp|O70579|PM34_MOUSE Peroxisomal membrane protein PMP34 OS=Mus musculus GN=Slc25a17 PE=2 SV=1 Back     alignment and function description
>sp|Q76P23|PM34_DICDI Mitochondrial substrate carrier family protein Q OS=Dictyostelium discoideum GN=mcfQ PE=2 SV=1 Back     alignment and function description
>sp|O43808|PM34_HUMAN Peroxisomal membrane protein PMP34 OS=Homo sapiens GN=SLC25A17 PE=1 SV=1 Back     alignment and function description
>sp|P21245|PM47A_CANBO Peroxisomal membrane protein PMP47A OS=Candida boidinii GN=PMP47A PE=1 SV=1 Back     alignment and function description
>sp|Q00319|PM47B_CANBO Peroxisomal membrane protein PMP47B OS=Candida boidinii GN=PMP47B PE=2 SV=1 Back     alignment and function description
>sp|Q7XA87|FOLT1_ARATH Folate transporter 1, chloroplastic OS=Arabidopsis thaliana GN=FOLT1 PE=2 SV=1 Back     alignment and function description
>sp|Q6DG32|S2536_DANRE Solute carrier family 25 member 36-A OS=Danio rerio GN=slc25a36a PE=2 SV=1 Back     alignment and function description
>sp|Q8BMG8|MFTC_MOUSE Mitochondrial folate transporter/carrier OS=Mus musculus GN=Slc25a32 PE=2 SV=1 Back     alignment and function description
>sp|Q9H2D1|MFTC_HUMAN Mitochondrial folate transporter/carrier OS=Homo sapiens GN=SLC25A32 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query271
255571823338 peroxisomal membrane protein pmp34, puta 0.859 0.689 0.794 7e-97
296086092337 unnamed protein product [Vitis vinifera] 0.874 0.703 0.772 2e-96
359486715342 PREDICTED: mitochondrial substrate carri 0.874 0.692 0.772 4e-96
224109374340 predicted protein [Populus trichocarpa] 0.870 0.694 0.767 7e-94
449463038341 PREDICTED: mitochondrial substrate carri 0.874 0.695 0.775 1e-93
356568612338 PREDICTED: mitochondrial substrate carri 0.867 0.695 0.734 1e-89
224101103326 predicted protein [Populus trichocarpa] 0.870 0.723 0.738 4e-89
326521674346 predicted protein [Hordeum vulgare subsp 0.874 0.684 0.694 8e-88
297827609331 peroxisomal membrane protein [Arabidopsi 0.859 0.703 0.716 3e-86
357492569336 Peroxisomal membrane protein [Medicago t 0.856 0.690 0.725 1e-85
>gi|255571823|ref|XP_002526854.1| peroxisomal membrane protein pmp34, putative [Ricinus communis] gi|223533753|gb|EEF35485.1| peroxisomal membrane protein pmp34, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  359 bits (922), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 189/238 (79%), Positives = 209/238 (87%), Gaps = 5/238 (2%)

Query: 1   MSDALINGLAGAGGGIIAQLITYPLQTVNARQQTERDVKKEKRKLGTVAQMCQVVKHEGW 60
           MSDALINGLAGAGGGIIAQLITYPLQTVN RQQT+RD KKE+RKLGT+ QMCQVVK+EGW
Sbjct: 1   MSDALINGLAGAGGGIIAQLITYPLQTVNTRQQTDRDPKKEQRKLGTIEQMCQVVKNEGW 60

Query: 61  GRLYGGLTPSIVGTAASQGVYYYFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAAL 120
            RLYGGLTPS+VGTAASQGVYYYFYQIFR+ AE  ALEHK++GIGDGSVGM SSLVVAAL
Sbjct: 61  ERLYGGLTPSLVGTAASQGVYYYFYQIFRDKAEAIALEHKRKGIGDGSVGMFSSLVVAAL 120

Query: 121 AGCVNVLLTNPIWVVVTRMQTHTKTLKKSKPCRSELTSSEKSS-HATVEPPPFATSHAIQ 179
           AGCVNVLLTNPIWVVVTRMQTHTK  KK K     L+ +E  +    VEPPPF TSHAIQ
Sbjct: 121 AGCVNVLLTNPIWVVVTRMQTHTKASKKFKT----LSVAENDTFFDAVEPPPFRTSHAIQ 176

Query: 180 EVYDEAGLWGFWRGVFPTLIMVSNPSIQFMLYETMLKKIKERRALRKKDNSGVTALEV 237
           EVYDE G++GFWRGV PTLIMVSNPSIQFMLYETMLKK+K++RALRK+ +  VTA+E+
Sbjct: 177 EVYDEGGVFGFWRGVLPTLIMVSNPSIQFMLYETMLKKLKKQRALRKRGDVAVTAVEI 234

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296086092|emb|CBI31533.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359486715|ref|XP_002279488.2| PREDICTED: mitochondrial substrate carrier family protein Q [Vitis vinifera] Back     alignment and taxonomy information
>gi|224109374|ref|XP_002315175.1| predicted protein [Populus trichocarpa] gi|222864215|gb|EEF01346.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449463038|ref|XP_004149241.1| PREDICTED: mitochondrial substrate carrier family protein Q-like [Cucumis sativus] gi|449524168|ref|XP_004169095.1| PREDICTED: mitochondrial substrate carrier family protein Q-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356568612|ref|XP_003552504.1| PREDICTED: mitochondrial substrate carrier family protein Q-like [Glycine max] Back     alignment and taxonomy information
>gi|224101103|ref|XP_002312143.1| predicted protein [Populus trichocarpa] gi|222851963|gb|EEE89510.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|326521674|dbj|BAK00413.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|297827609|ref|XP_002881687.1| peroxisomal membrane protein [Arabidopsis lyrata subsp. lyrata] gi|297327526|gb|EFH57946.1| peroxisomal membrane protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357492569|ref|XP_003616573.1| Peroxisomal membrane protein [Medicago truncatula] gi|355517908|gb|AES99531.1| Peroxisomal membrane protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query271
TAIR|locus:2061176331 PXN "peroxisomal NAD carrier" 0.867 0.709 0.640 5.5e-77
DICTYBASE|DDB_G0272346329 mcfQ "mitochondrial substrate 0.420 0.346 0.353 9.6e-24
ASPGD|ASPL0000011755320 AN4280 [Emericella nidulans (t 0.690 0.584 0.323 9e-22
CGD|CAL0003297363 orf19.5921 [Candida albicans ( 0.564 0.421 0.277 4.9e-17
UNIPROTKB|Q5ANI2363 PMP47 "Potential peroxisomal s 0.564 0.421 0.277 4.9e-17
UNIPROTKB|E1BSF1322 SLC25A32 "Uncharacterized prot 0.398 0.335 0.376 3.3e-14
UNIPROTKB|Q5ZJN5322 SLC25A32 "Uncharacterized prot 0.398 0.335 0.376 4.8e-14
ZFIN|ZDB-GENE-050306-39313 slc25a32b "solute carrier fami 0.394 0.341 0.330 4.2e-13
TAIR|locus:2154910308 FOLT1 "folate transporter 1" [ 0.328 0.288 0.346 3e-12
ASPGD|ASPL0000007754311 AN10823 [Emericella nidulans ( 0.405 0.353 0.288 9e-12
TAIR|locus:2061176 PXN "peroxisomal NAD carrier" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 153/239 (64%), Positives = 178/239 (74%)

Query:     1 MSDXXXXXXXXXXXXXXXXXXTYPLQTVNARQQTERDVKKEKRKLGTVAQMCQVVKHEGW 60
             MSD                  TYPLQTVN RQQTERD+K+EKRKLGT+  MCQVVK EGW
Sbjct:     1 MSDALINGLAGAGGGIIAQLLTYPLQTVNTRQQTERDLKREKRKLGTIEHMCQVVKQEGW 60

Query:    61 GRLYGGLTPSIVGTAASQGVYYYFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAAL 120
              RLYGGL PS+ GTAASQGVYYYFYQ+FRN AE  AL  KK+G+GDGSVGM +SL+VAA 
Sbjct:    61 ERLYGGLAPSLAGTAASQGVYYYFYQVFRNRAEATALARKKKGLGDGSVGMFASLLVAAF 120

Query:   121 AGCVNVLLTNPIWVVVTRMQTHTKTLKKSKPCRSELTSSEKSSHATVEPPPFATSHAIQE 180
             AG VNVL+TNPIWV+VTRMQTH K + K +    E  SS   +   VEP P+ T + I+E
Sbjct:   121 AGSVNVLMTNPIWVIVTRMQTHRK-MTKDQTAAPESPSSNAEALVAVEPRPYGTFNTIRE 179

Query:   181 VYDEAGLWGFWRGVFPTLIMVSNPSIQFMLYETMLKKIKERRALRKKDNSGVTALEVTF 239
             VYDEAG+ GFW+GV PTLIMVSNPS+QFMLYETML K+K++RAL+  +N  VTALE TF
Sbjct:   180 VYDEAGITGFWKGVIPTLIMVSNPSMQFMLYETMLTKLKKKRALKGSNN--VTALE-TF 235
GO:0005739 "mitochondrion" evidence=ISM
GO:0005743 "mitochondrial inner membrane" evidence=ISS
GO:0006810 "transport" evidence=ISS
GO:0005778 "peroxisomal membrane" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005777 "peroxisome" evidence=IDA
GO:0043132 "NAD transport" evidence=IMP
GO:0044375 "regulation of peroxisome size" evidence=IMP
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
DICTYBASE|DDB_G0272346 mcfQ "mitochondrial substrate carrier family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000011755 AN4280 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
CGD|CAL0003297 orf19.5921 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ANI2 PMP47 "Potential peroxisomal small molecule transporter" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
UNIPROTKB|E1BSF1 SLC25A32 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJN5 SLC25A32 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050306-39 slc25a32b "solute carrier family 25, member 32b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2154910 FOLT1 "folate transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000007754 AN10823 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O04200PXN_ARATHNo assigned EC number0.71180.85970.7039yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018287001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (337 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query271
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 2e-12
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 3e-12
PTZ00168259 PTZ00168, PTZ00168, mitochondrial carrier protein; 6e-04
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information 
 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 22/116 (18%)

Query: 107 GSVGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQTHTKTLKKSKPCRSELTSSEKSSHAT 166
             +  L+SL+   +AG +   +T P+ VV TR+Q+       S+  +             
Sbjct: 1   SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAA--GGSRKYKG------------ 46

Query: 167 VEPPPFATSHAIQEVYDEAGLWGFWRGVFPTLI-MVSNPSIQFMLYETMLKKIKER 221
                       +++Y E G+ G ++G+ P L+ +    +I F  YET+ K + ++
Sbjct: 47  -------ILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLKK 95

Length = 96
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 271
KOG0764299 consensus Mitochondrial FAD carrier protein [Energ 100.0
KOG0752320 consensus Mitochondrial solute carrier protein [En 100.0
KOG0758297 consensus Mitochondrial carnitine-acylcarnitine ca 100.0
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 100.0
KOG0760302 consensus Mitochondrial carrier protein MRS3/4 [En 100.0
KOG0753317 consensus Mitochondrial fatty acid anion carrier p 100.0
PTZ00168259 mitochondrial carrier protein; Provisional 100.0
KOG0754294 consensus Mitochondrial oxodicarboxylate carrier p 100.0
KOG0762311 consensus Mitochondrial carrier protein [Energy pr 100.0
KOG0752320 consensus Mitochondrial solute carrier protein [En 100.0
KOG0757319 consensus Mitochondrial carrier protein - Rim2p/Mr 100.0
KOG0759286 consensus Mitochondrial oxoglutarate/malate carrie 100.0
KOG0761361 consensus Mitochondrial carrier protein CGI-69 [En 100.0
KOG0770353 consensus Predicted mitochondrial carrier protein 100.0
KOG0753317 consensus Mitochondrial fatty acid anion carrier p 100.0
KOG0764299 consensus Mitochondrial FAD carrier protein [Energ 100.0
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 100.0
KOG0751 694 consensus Mitochondrial aspartate/glutamate carrie 100.0
KOG0757319 consensus Mitochondrial carrier protein - Rim2p/Mr 100.0
KOG0768323 consensus Mitochondrial carrier protein PET8 [Ener 100.0
KOG0766297 consensus Predicted mitochondrial carrier protein 100.0
KOG0760302 consensus Mitochondrial carrier protein MRS3/4 [En 100.0
KOG0769308 consensus Predicted mitochondrial carrier protein 100.0
KOG0765333 consensus Predicted mitochondrial carrier protein 100.0
KOG0763301 consensus Mitochondrial ornithine transporter [Ene 100.0
KOG0762311 consensus Mitochondrial carrier protein [Energy pr 100.0
PTZ00168259 mitochondrial carrier protein; Provisional 100.0
KOG0768323 consensus Mitochondrial carrier protein PET8 [Ener 100.0
KOG0750304 consensus Mitochondrial solute carrier protein [En 100.0
KOG0036463 consensus Predicted mitochondrial carrier protein 100.0
KOG0758297 consensus Mitochondrial carnitine-acylcarnitine ca 100.0
KOG0759286 consensus Mitochondrial oxoglutarate/malate carrie 100.0
KOG0755320 consensus Mitochondrial oxaloacetate carrier prote 100.0
KOG0767333 consensus Mitochondrial phosphate carrier protein 100.0
KOG0754294 consensus Mitochondrial oxodicarboxylate carrier p 100.0
KOG0756299 consensus Mitochondrial tricarboxylate/dicarboxyla 100.0
KOG0761361 consensus Mitochondrial carrier protein CGI-69 [En 99.97
KOG0751694 consensus Mitochondrial aspartate/glutamate carrie 99.97
KOG0749298 consensus Mitochondrial ADP/ATP carrier proteins [ 99.97
KOG0756299 consensus Mitochondrial tricarboxylate/dicarboxyla 99.97
KOG0749298 consensus Mitochondrial ADP/ATP carrier proteins [ 99.96
KOG0765333 consensus Predicted mitochondrial carrier protein 99.96
KOG0036463 consensus Predicted mitochondrial carrier protein 99.96
KOG0766297 consensus Predicted mitochondrial carrier protein 99.96
KOG0763301 consensus Mitochondrial ornithine transporter [Ene 99.96
KOG0750304 consensus Mitochondrial solute carrier protein [En 99.95
KOG0770353 consensus Predicted mitochondrial carrier protein 99.95
KOG0755320 consensus Mitochondrial oxaloacetate carrier prote 99.95
KOG0769308 consensus Predicted mitochondrial carrier protein 99.91
KOG0767333 consensus Mitochondrial phosphate carrier protein 99.9
KOG2745321 consensus Mitochondrial carrier protein [General f 99.84
KOG1519297 consensus Predicted mitochondrial carrier protein 99.8
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 99.78
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 99.78
KOG1519297 consensus Predicted mitochondrial carrier protein 99.62
KOG2745321 consensus Mitochondrial carrier protein [General f 99.38
KOG2954427 consensus Mitochondrial carrier protein [General f 99.36
KOG2954427 consensus Mitochondrial carrier protein [General f 98.56
>KOG0764 consensus Mitochondrial FAD carrier protein [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=8.3e-47  Score=307.19  Aligned_cols=231  Identities=27%  Similarity=0.459  Sum_probs=198.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCccc-ccccccCcHHHHHHHHHHhhchhhhccchhHHHHHHhhhHHHH
Q 024151            3 DALINGLAGAGGGIIAQLITYPLQTVNARQQTERDV-KKEKRKLGTVAQMCQVVKHEGWGRLYGGLTPSIVGTAASQGVY   81 (271)
Q Consensus         3 ~~~~~~~ag~~ag~~~~~i~~Pld~vk~r~Q~~~~~-~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~   81 (271)
                      ..+.++++|..+|.++++++||||++|+|+|++... ...+.|+++.++++.|++.||++|||||+.|++++..+.+++|
T Consensus         4 ~~~~~~iaG~~aG~~stl~vhPlDl~K~R~qa~~g~~~~~~~y~g~~~~~~tI~r~eG~rGLY~Gl~P~v~G~~~sWgiY   83 (299)
T KOG0764|consen    4 VQWEPLIAGLSAGFASTLVVHPLDLVKIRFQASDGRTSLRPAYKGIFGALKTIFRSEGLRGLYRGLSPNVLGSAPSWGLY   83 (299)
T ss_pred             cchhhhhhhhhhhhhhhhhccchhHhhhhhhhccCccccchhhccHHHHHHHHHHhhhHHHHhccCcHHHHhchhhHHHH
Confidence            457888999999999999999999999999999543 3347899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCCcchHHHHHHHHHHHHHHHHhcccHHHHHHhHhcccccccCCCCCCcccccccc
Q 024151           82 YYFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQTHTKTLKKSKPCRSELTSSEK  161 (271)
Q Consensus        82 f~~y~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~i~~P~d~vk~r~q~~~~~~~~~~~~~~~~~~~~~  161 (271)
                      |.+||.+|+++.+..        .+...+...++.+++.||++..++++|++|+|||++.+...                
T Consensus        84 F~~Y~~~K~~~~~~~--------~~~~l~~~~~l~sa~~AGa~t~~lTNPIWVvKTRL~~Q~~~----------------  139 (299)
T KOG0764|consen   84 FFFYDFLKSFITEGF--------NSGLLSVLANLSSAAEAGAATTILTNPIWVVKTRLMLQSKN----------------  139 (299)
T ss_pred             HHHHHHHHHHHhcCC--------CcccchHHHHHHHHHhhhHHHHHhcCCeEEEeehhhhhccc----------------
Confidence            999999999995543        33445888999999999999999999999999999999753                


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHhhChHHhhhhhhhchhccccchhhHHHHHHHHHHHHHHHhhcccCC-CCC-chhHHHH
Q 024151          162 SSHATVEPPPFATSHAIQEVYDEAGLWGFWRGVFPTLIMVSNPSIQFMLYETMLKKIKERRALRKKDN-SGV-TALEVTF  239 (271)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~lr~~~~~i~~~~ye~~k~~~~~~~~~~~~~~-~~~-~~~~~~~  239 (271)
                          .+...|++++|++++|+++||++|||||+.|.++.+...+|+|..||.+|.++.+...+..+.. .++ ..+.+.+
T Consensus       140 ----~~~~~Y~~~f~a~rki~k~EG~rgLY~GlVP~L~GvshgAiQF~~YE~lK~~~~~~~~~~~d~~l~n~~~i~~as~  215 (299)
T KOG0764|consen  140 ----VQSTAYKGMFDALRKIYKEEGFRGLYKGLVPGLLGVSHGAIQFPAYEELKLRKNRKQGRSTDNHLSNLDYIALASL  215 (299)
T ss_pred             ----ccccccccHHHHHHHHHHHHhHHHHHhhhhhHhhhhchhhhhhhhHHHHHHHHHHhcCCCcccchhhHHHHHHHHH
Confidence                2346899999999999999999999999999999999999999999999999985443322110 111 1133337


Q ss_pred             HHhhcCCCCCchhhHHhhhccc
Q 024151          240 WFCFLSPPFFNPSILNSVLGAP  261 (271)
Q Consensus       240 ~g~~a~~~~~p~d~v~t~l~~p  261 (271)
                      +-++|+.+++|..|+|||||.-
T Consensus       216 SKv~Ast~TYP~qVlRtRLQ~~  237 (299)
T KOG0764|consen  216 SKVFASTLTYPHQVLRTRLQDQ  237 (299)
T ss_pred             HHHHHHHhcchHHHHHHHHHhc
Confidence            7788999999999999999853

>KOG0752 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0758 consensus Mitochondrial carnitine-acylcarnitine carrier protein [Energy production and conversion] Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0760 consensus Mitochondrial carrier protein MRS3/4 [Energy production and conversion] Back     alignment and domain information
>KOG0753 consensus Mitochondrial fatty acid anion carrier protein/Uncoupling protein [Energy production and conversion] Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0754 consensus Mitochondrial oxodicarboxylate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0762 consensus Mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0752 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0757 consensus Mitochondrial carrier protein - Rim2p/Mrs12p [Energy production and conversion] Back     alignment and domain information
>KOG0759 consensus Mitochondrial oxoglutarate/malate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0761 consensus Mitochondrial carrier protein CGI-69 [Energy production and conversion] Back     alignment and domain information
>KOG0770 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0753 consensus Mitochondrial fatty acid anion carrier protein/Uncoupling protein [Energy production and conversion] Back     alignment and domain information
>KOG0764 consensus Mitochondrial FAD carrier protein [Energy production and conversion] Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion] Back     alignment and domain information
>KOG0757 consensus Mitochondrial carrier protein - Rim2p/Mrs12p [Energy production and conversion] Back     alignment and domain information
>KOG0768 consensus Mitochondrial carrier protein PET8 [Energy production and conversion] Back     alignment and domain information
>KOG0766 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0760 consensus Mitochondrial carrier protein MRS3/4 [Energy production and conversion] Back     alignment and domain information
>KOG0769 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0765 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0763 consensus Mitochondrial ornithine transporter [Energy production and conversion] Back     alignment and domain information
>KOG0762 consensus Mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0768 consensus Mitochondrial carrier protein PET8 [Energy production and conversion] Back     alignment and domain information
>KOG0750 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0758 consensus Mitochondrial carnitine-acylcarnitine carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0759 consensus Mitochondrial oxoglutarate/malate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0755 consensus Mitochondrial oxaloacetate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0767 consensus Mitochondrial phosphate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0754 consensus Mitochondrial oxodicarboxylate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0756 consensus Mitochondrial tricarboxylate/dicarboxylate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0761 consensus Mitochondrial carrier protein CGI-69 [Energy production and conversion] Back     alignment and domain information
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion] Back     alignment and domain information
>KOG0749 consensus Mitochondrial ADP/ATP carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0756 consensus Mitochondrial tricarboxylate/dicarboxylate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0749 consensus Mitochondrial ADP/ATP carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0765 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0766 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0763 consensus Mitochondrial ornithine transporter [Energy production and conversion] Back     alignment and domain information
>KOG0750 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0770 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0755 consensus Mitochondrial oxaloacetate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0769 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0767 consensus Mitochondrial phosphate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG2745 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG1519 consensus Predicted mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>KOG1519 consensus Predicted mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2745 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2954 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2954 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query271
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 1e-23
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 1e-19
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 2e-09
1okc_A 297 ADP, ATP carrier protein heart isoform T1; mitocho 2e-06
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 5e-21
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 9e-16
2lck_A 303 Mitochondrial uncoupling protein 2; membrane prote 2e-07
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
 Score = 96.2 bits (240), Expect = 1e-23
 Identities = 35/211 (16%), Positives = 68/211 (32%), Gaps = 32/211 (15%)

Query: 9   LAGAGGGIIAQLITYPLQTVNARQQTERDVKKEKRKL-GTVAQMCQVVKHEGWGRLYGGL 67
            +G   G  +    YPL     R   +      +R+  G    + ++ K +G   LY G 
Sbjct: 117 ASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGF 176

Query: 68  TPSIVGTAASQGVYYYFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAALAGCVNVL 127
             S+ G    +  Y+  Y              K       +V ++ S ++A     V  L
Sbjct: 177 NVSVQGIIIYRAAYFGVYDTA-----------KGMLPDPKNVHIIVSWMIAQTVTAVAGL 225

Query: 128 LTNPIWVVVTRMQTHTKTLKKSKPCRSELTSSEKSSHATVEPPPFATSHAIQEVYDEAGL 187
           ++ P   V  RM   +                              T    +++  + G 
Sbjct: 226 VSYPFDTVRRRMMMQSGRKGADIMYTG-------------------TVDCWRKIAKDEGP 266

Query: 188 WGFWRGVFPTLIMVSNPSIQFMLYETMLKKI 218
             F++G +  ++     +   +LY+ + KK 
Sbjct: 267 KAFFKGAWSNVLRGMGGAFVLVLYDEI-KKF 296
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query271
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 100.0
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 100.0
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 100.0
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 100.0
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure
Probab=100.00  E-value=3.4e-45  Score=315.99  Aligned_cols=231  Identities=14%  Similarity=0.155  Sum_probs=191.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCcccc---cccccCcHHHHHHHHHHhhchhhhccchhHHHHHHhhhHH
Q 024151            3 DALINGLAGAGGGIIAQLITYPLQTVNARQQTERDVK---KEKRKLGTVAQMCQVVKHEGWGRLYGGLTPSIVGTAASQG   79 (271)
Q Consensus         3 ~~~~~~~ag~~ag~~~~~i~~Pld~vk~r~Q~~~~~~---~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~   79 (271)
                      +.+.++++|++||+++.+++||+|+||+|+|++....   ....|+++++++++|+++||++|||||+.+++++.++..+
T Consensus         6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~   85 (297)
T 1okc_A            6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA   85 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHH
Confidence            3567899999999999999999999999999986421   2347899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCCCcchHHHHHHHHHHHHHHHHhcccHHHHHHhHhcccccccCCCCCCcccccc
Q 024151           80 VYYYFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQTHTKTLKKSKPCRSELTSS  159 (271)
Q Consensus        80 ~~f~~y~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~i~~P~d~vk~r~q~~~~~~~~~~~~~~~~~~~  159 (271)
                      ++|.+||.+|+.+......     ..+........+++|++||++++++++|+|+||+|+|++....             
T Consensus        86 ~~f~~ye~~k~~~~~~~~~-----~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~-------------  147 (297)
T 1okc_A           86 LNFAFKDKYKQIFLGGVDR-----HKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG-------------  147 (297)
T ss_dssp             HHHHHHHHHHHHHHTTCCT-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS-------------
T ss_pred             HHHHHHHHHHHHhccccCc-----ccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC-------------
Confidence            9999999999854322100     0011123467899999999999999999999999999984311             


Q ss_pred             ccCCCCCCCCCCCCHHHHHHHHHHhhChHHhhhhhhhchhc-cccchhhHHHHHHHHHHHHHHHhhcccCCCCCchhHHH
Q 024151          160 EKSSHATVEPPPFATSHAIQEVYDEAGLWGFWRGVFPTLIM-VSNPSIQFMLYETMLKKIKERRALRKKDNSGVTALEVT  238 (271)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~lr-~~~~~i~~~~ye~~k~~~~~~~~~~~~~~~~~~~~~~~  238 (271)
                            .....|.++++++++|+++||++|||||+.++++| +|.++++|.+||.+|+++.+..    +.......+++.
T Consensus       148 ------~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~----~~~~~~~~~~g~  217 (297)
T 1okc_A          148 ------AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK----NVHIIVSWMIAQ  217 (297)
T ss_dssp             ------TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG----CSCHHHHHHHHH
T ss_pred             ------CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC----CccHHHHHHHHH
Confidence                  12356889999999999999999999999999999 8999999999999999774321    111112467788


Q ss_pred             HHHhhcCCCCCchhhHHhhhccc
Q 024151          239 FWFCFLSPPFFNPSILNSVLGAP  261 (271)
Q Consensus       239 ~~g~~a~~~~~p~d~v~t~l~~p  261 (271)
                      ++|++++.+++|+|+||||+|..
T Consensus       218 ~ag~~a~~~t~P~dvvktr~q~~  240 (297)
T 1okc_A          218 TVTAVAGLVSYPFDTVRRRMMMQ  240 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcChHHHHHHHHhhc
Confidence            88999999999999999999864
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 271
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 4e-11
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 3e-07
d1okca_ 292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 6e-04
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]

 Score = 59.7 bits (143), Expect = 4e-11
 Identities = 33/206 (16%), Positives = 66/206 (32%), Gaps = 31/206 (15%)

Query: 10  AGAGGGIIAQLITYPLQTVNARQQTERDVKKEKRKL-GTVAQMCQVVKHEGWGRLYGGLT 68
           +G   G  +    YPL     R   +      +R+  G    + ++ K +G   LY G  
Sbjct: 117 SGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFN 176

Query: 69  PSIVGTAASQGVYYYFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAALAGCVNVLL 128
            S+ G    +  Y+  Y              K       +V ++ S ++A     V  L+
Sbjct: 177 VSVQGIIIYRAAYFGVYDT-----------AKGMLPDPKNVHIIVSWMIAQTVTAVAGLV 225

Query: 129 TNPIWVVVTRMQTHTKTLKKSKPCRSELTSSEKSSHATVEPPPFATSHAIQEVYDEAGLW 188
           + P   V  RM   +                              T    +++  + G  
Sbjct: 226 SYPFDTVRRRMMMQSGRKGADIMYTG-------------------TVDCWRKIAKDEGPK 266

Query: 189 GFWRGVFPTLIMVSNPSIQFMLYETM 214
            F++G +  ++     +   +LY+ +
Sbjct: 267 AFFKGAWSNVLRGMGGAFVLVLYDEI 292
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query271
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 100.0
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 100.0
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]

Probab=100.00  E-value=4.7e-41  Score=287.00  Aligned_cols=230  Identities=14%  Similarity=0.166  Sum_probs=194.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCcccc---cccccCcHHHHHHHHHHhhchhhhccchhHHHHHHhhhHH
Q 024151            3 DALINGLAGAGGGIIAQLITYPLQTVNARQQTERDVK---KEKRKLGTVAQMCQVVKHEGWGRLYGGLTPSIVGTAASQG   79 (271)
Q Consensus         3 ~~~~~~~ag~~ag~~~~~i~~Pld~vk~r~Q~~~~~~---~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~   79 (271)
                      +.+.+++||++||+++.+++||||+||+|+|++....   ....|+++++++++++++||+++||||+.+.+++..+..+
T Consensus         5 ~~~~~~laG~~a~~i~~~~~~Pld~iK~r~Q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~l~~~~~~~~   84 (292)
T d1okca_           5 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA   84 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCCCcccccCCHHHHHHHHHHhhhhhhhhhccchhhhhhhcccc
Confidence            3578899999999999999999999999999986532   2357899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCCCcchHHHHHHHHHHHHHHHHhcccHHHHHHhHhcccccccCCCCCCcccccc
Q 024151           80 VYYYFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQTHTKTLKKSKPCRSELTSS  159 (271)
Q Consensus        80 ~~f~~y~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~i~~P~d~vk~r~q~~~~~~~~~~~~~~~~~~~  159 (271)
                      ++|..||.+++.+.......     .+........+.+|.+||+++.++++|+|++|+|+|.+....             
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~a~~~~~~~~~P~~~ik~r~~~~~~~~-------------  146 (292)
T d1okca_          85 LNFAFKDKYKQIFLGGVDRH-----KQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG-------------  146 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCTT-----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS-------------
T ss_pred             hhHHHHHHHHHHHhcccccc-----cccchhhhhhhhhhhhhhhhHHhhhhhhhhhheeeecccccc-------------
Confidence            99999999999887654221     122234456788999999999999999999999999986422             


Q ss_pred             ccCCCCCCCCCCCCHHHHHHHHHHhhChHHhhhhhhhchhc-cccchhhHHHHHHHHHHHHHHHhhcccCCCCCchhHHH
Q 024151          160 EKSSHATVEPPPFATSHAIQEVYDEAGLWGFWRGVFPTLIM-VSNPSIQFMLYETMLKKIKERRALRKKDNSGVTALEVT  238 (271)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~lr-~~~~~i~~~~ye~~k~~~~~~~~~~~~~~~~~~~~~~~  238 (271)
                            .....|.+..+++++++++||+++||+|+.++++| +++++++|..||.+|+++.+...    .....+.+.+.
T Consensus       147 ------~~~~~~~~~~~~~~~~~~~~G~~~l~~G~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~----~~~~~~~~~~~  216 (292)
T d1okca_         147 ------AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKN----VHIIVSWMIAQ  216 (292)
T ss_dssp             ------TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGC----SCHHHHHHHHH
T ss_pred             ------ccccccccHHHHHHHhhhccchhhhhccccccccceehHhhhhhhhccchhhhcccccc----cchHHHHHHHH
Confidence                  23356789999999999999999999999999999 89999999999999987654332    11123567778


Q ss_pred             HHHhhcCCCCCchhhHHhhhcc
Q 024151          239 FWFCFLSPPFFNPSILNSVLGA  260 (271)
Q Consensus       239 ~~g~~a~~~~~p~d~v~t~l~~  260 (271)
                      ++|.+++.+++|+||||||+|.
T Consensus       217 ~~~~~a~~~t~P~dvvktR~q~  238 (292)
T d1okca_         217 TVTAVAGLVSYPFDTVRRRMMM  238 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhccccHHHHHHHHHh
Confidence            8888999999999999999985
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure