Citrus Sinensis ID: 024154

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
Protein Sequence
MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQVSASSVSF
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEEEcccccEEEEEEcccccccccccccccccccEEEEEEEcccEEEEEEEEEccEEEEcccccEEEccccEEEEEEEEcccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccEEccccccccEEEEcHHHHHHHHHHHHHHccccEEEcccccccEEEEEccHHHHHHHHHHHccccccccHHHHHcccHHHHHHHHHHHcccccccccccccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEEEEEEEcccccEEEEEEcccccccccccccccccccEEEEEEEcccccEEEEEEEcccEEccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccHHHHcccHHHHHHHHHccccEEEcccccEEEEEEcccHHHHHHHHHHHccccEccccccccccEEEEEEHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHHHHcccccccccccccccEEEEccccccc
Coil and Loop (DISEMBL)
mynsglntghensgvvgsilvpvrfiwpnggrrvslsgsftrwsepmpmspsegcpavfqiicrlppghhqykfyvdgewrhdenqphvsgnygvVNCVYIavpqpdmvpntispetsgnmevddvvmrpegfaqySEADLQLSRDRISSFLSTHTVYEllpdsgkvtaLDVNLAVKQAFHVLYeqglpmvplwddfkgRFVGVLSALDFILILRElgtngsnlteeeLETHTISAWKVGKLQLNLKrqmdgngrpcprplvqvsassvsf
Flexible Loop (DISEMBL)
mynsglntghensgvvGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMdgngrpcprplvqvsassvsf
Low Complexity Region (SEG)
MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQVSASSVSF
Disordered region (IsUnstruct)
*************GVVGSILVPVRFIWPNGGRRVSLSGSFTRW**********GCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQ***************************FAQY**ADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNL*************************
Disordered Region (DISOPRED)
*********************PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQM****RPCPRPLVQVSASSVSF
Disordered Region (DISEMBL)
*********HENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRW*********EGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQVSASSVSF
Disordered Region (DISPRO)
****************GSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQP*MVPNT*******N*E**D********AQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQVSA*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQVSASSVSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	271	2.2.26 [Sep-21-2011]
Q944A6	487	Sucrose nonfermenting 4-l	yes	no	0.959	0.533	0.667	2e-99
Q9R078	270	5'-AMP-activated protein	yes	no	0.302	0.303	0.448	8e-13
P80386	270	5'-AMP-activated protein	yes	no	0.302	0.303	0.448	8e-13
Q5BIS9	270	5'-AMP-activated protein	yes	no	0.302	0.303	0.459	1e-12
Q5R801	270	5'-AMP-activated protein	yes	no	0.302	0.303	0.448	2e-12
Q9Y478	270	5'-AMP-activated protein	yes	no	0.302	0.303	0.448	2e-12
P54619	331	5'-AMP-activated protein	no	no	0.361	0.296	0.393	3e-12
Q09138	330	5'-AMP-activated protein	yes	no	0.361	0.296	0.393	3e-12
P58108	330	5'-AMP-activated protein	no	no	0.361	0.296	0.393	3e-12
O54950	330	5'-AMP-activated protein	no	no	0.361	0.296	0.393	3e-12

>sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana GN=SNF4 PE=1 SV=1

 Score =  362 bits (928), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 181/271 (66%), Positives = 208/271 (76%), Gaps = 11/271 (4%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G 
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGR 118

Query: 120 -NMEVDDVVMRP-----EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVN 173
            NM+VDDV +R      E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVN
Sbjct: 119 SNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query: 174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233
           L VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHT
Sbjct: 179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query: 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQV 264
           I+AWK GK  ++  RQ DG+GRP PRPLVQV
Sbjct: 239 IAAWKEGKAHIS--RQYDGSGRPYPRPLVQV 267

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9R078|AAKB1_MOUSE 5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus GN=Prkab1 PE=1 SV=2

 Score = 74.3 bits (181), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 5/87 (5%)

Query: 22  PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
           P  F W  GG+ V LSGSF  WS+ +P++ S+     F  I  LP G HQYKF+VDG+W 
Sbjct: 79  PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSQNN---FVAILDLPEGEHQYKFFVDGQWT 134

Query: 82  HDENQPHVSGNYGVVNCVYIAVPQPDM 108
           HD ++P V+   G VN + I V + D 
Sbjct: 135 HDPSEPIVTSQLGTVNNI-IQVKKTDF 160

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Mus musculus (taxid: 10090)

>sp|P80386|AAKB1_RAT 5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus GN=Prkab1 PE=1 SV=4

 Score = 74.3 bits (181), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 5/87 (5%)

Query: 22  PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
           P  F W  GG+ V LSGSF  WS+ +P++ S+     F  I  LP G HQYKF+VDG+W 
Sbjct: 79  PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSQNN---FVAILDLPEGEHQYKFFVDGQWT 134

Query: 82  HDENQPHVSGNYGVVNCVYIAVPQPDM 108
           HD ++P V+   G VN + I V + D 
Sbjct: 135 HDPSEPIVTSQLGTVNNI-IQVKKTDF 160

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Rattus norvegicus (taxid: 10116)

>sp|Q5BIS9|AAKB1_BOVIN 5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus GN=PRKAB1 PE=2 SV=3

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 51/87 (58%), Gaps = 5/87 (5%)

Query: 22  PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
           P  F W  GG+ V LSGSF  WS+ +P++ S      F  I  LP G HQYKF+VDG+W 
Sbjct: 79  PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSHNN---FVAILDLPEGEHQYKFFVDGQWT 134

Query: 82  HDENQPHVSGNYGVVNCVYIAVPQPDM 108
           HD ++P V+   G VN V I V + D 
Sbjct: 135 HDPSEPVVTSQLGTVNNV-IQVKKTDF 160

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Bos taurus (taxid: 9913)

>sp|Q5R801|AAKB1_PONAB 5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii GN=PRKAB1 PE=2 SV=3

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 51/87 (58%), Gaps = 5/87 (5%)

Query: 22  PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
           P  F W  GG+ V LSGSF  WS+ +P++ S      F  I  LP G HQYKF+VDG+W 
Sbjct: 79  PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSHNN---FVAILDLPEGEHQYKFFVDGQWT 134

Query: 82  HDENQPHVSGNYGVVNCVYIAVPQPDM 108
           HD ++P V+   G VN + I V + D 
Sbjct: 135 HDPSEPIVTSQLGTVNNI-IQVKKTDF 160

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Pongo abelii (taxid: 9601)

>sp|Q9Y478|AAKB1_HUMAN 5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens GN=PRKAB1 PE=1 SV=4

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 51/87 (58%), Gaps = 5/87 (5%)

Query: 22  PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
           P  F W  GG+ V LSGSF  WS+ +P++ S      F  I  LP G HQYKF+VDG+W 
Sbjct: 79  PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSHNN---FVAILDLPEGEHQYKFFVDGQWT 134

Query: 82  HDENQPHVSGNYGVVNCVYIAVPQPDM 108
           HD ++P V+   G VN + I V + D 
Sbjct: 135 HDPSEPIVTSQLGTVNNI-IQVKKTDF 160

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Homo sapiens (taxid: 9606)

>sp|P54619|AAKG1_HUMAN 5'-AMP-activated protein kinase subunit gamma-1 OS=Homo sapiens GN=PRKAG1 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 30  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLK 247
           DFI IL       + +   ELE H I  W+   LQ + K
Sbjct: 90  DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK 127

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|Q09138|AAKG1_PIG 5'-AMP-activated protein kinase subunit gamma-1 OS=Sus scrofa GN=PRKAG1 PE=1 SV=2

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 30  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLK 247
           DFI IL       + +   ELE H I  W+   LQ + K
Sbjct: 90  DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK 127

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Sus scrofa (taxid: 9823)

>sp|P58108|AAKG1_BOVIN 5'-AMP-activated protein kinase subunit gamma-1 OS=Bos taurus GN=PRKAG1 PE=2 SV=2

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 30  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLK 247
           DFI IL       + +   ELE H I  W+   LQ + K
Sbjct: 90  DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK 127

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Bos taurus (taxid: 9913)

>sp|O54950|AAKG1_MOUSE 5'-AMP-activated protein kinase subunit gamma-1 OS=Mus musculus GN=Prkag1 PE=1 SV=2

 Score = 72.4 bits (176), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 1/99 (1%)

Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 29  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88

Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLK 247
           DFI IL       + +   ELE H I  W+   LQ + K
Sbjct: 89  DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK 126

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
359487759	482	PREDICTED: sucrose nonfermenting 4-like	0.955	0.537	0.684	4e-99
18390971	487	sucrose nonfermenting 4-like protein [Ar	0.959	0.533	0.667	1e-97
225450904	488	PREDICTED: sucrose nonfermenting 4-like	0.955	0.530	0.660	2e-97
75037079	394	AKINbetagammaI [Arabidopsis thaliana]	0.959	0.659	0.667	4e-97
297849192	479	hypothetical protein ARALYDRAFT_470981 [	0.948	0.536	0.676	4e-97
255542654	540	AMP-activated protein kinase, gamma regu	0.944	0.474	0.671	7e-97
312281727	487	unnamed protein product [Thellungiella h	0.959	0.533	0.649	4e-94
225432326	491	PREDICTED: sucrose nonfermenting 4-like	0.959	0.529	0.607	9e-89
356556126	491	PREDICTED: sucrose nonfermenting 4-like	0.959	0.529	0.591	2e-86
224123752	475	predicted protein [Populus trichocarpa]	0.937	0.534	0.623	7e-86

>gi|359487759|ref|XP_003633645.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 2 [Vitis vinifera] gi|296088362|emb|CBI36807.3| unnamed protein product [Vitis vinifera]

 Score =  367 bits (941), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 182/266 (68%), Positives = 213/266 (80%), Gaps = 7/266 (2%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ SG  +GHENS + G++L+P RF+WP GGRRV LSGSFTRWSE +PMSP EGCP VFQ
Sbjct: 1   MFVSGAESGHENSAIPGTVLIPTRFVWPYGGRRVLLSGSFTRWSEHIPMSPIEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +I  L PG+HQYKF+VDGEWRHDE+QP VSGNYGVVN +++   +PD+VP   SP+T G 
Sbjct: 61  VIWSLAPGYHQYKFFVDGEWRHDEHQPFVSGNYGVVNTIFLPR-EPDVVPAVFSPDTPGG 119

Query: 120 -NMEVD-DVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVK 177
            NM++D D   R E   + SEADL++SR R+S FLSTH  YELLP+SGKV ALDVNL VK
Sbjct: 120 SNMDLDNDPFPRGEVIPRISEADLEVSRHRVSEFLSTHIAYELLPESGKVIALDVNLPVK 179

Query: 178 QAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAW 237
           QAFH LYEQG+P+ PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEELETHTISAW
Sbjct: 180 QAFHTLYEQGIPVAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAW 239

Query: 238 KVGKLQLNLKRQMDGNGRPCPRPLVQ 263
           K GKL L   RQ+DG+GR CPR LV 
Sbjct: 240 KEGKLHL---RQIDGSGRLCPRHLVH 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390971|ref|NP_563834.1| sucrose nonfermenting 4-like protein [Arabidopsis thaliana] gi|75249553|sp|Q944A6.1|SNF4_ARATH RecName: Full=Sucrose nonfermenting 4-like protein; Short=SNF4; AltName: Full=CBS domain-containing protein CBSCBS3; AltName: Full=SNF1-related protein kinase regulatory subunit betagamma; Short=AKIN subunit betagamma; Short=AKINbetagamma gi|16612255|gb|AAL27498.1|AF439826_1 At1g09020/F7G19_11 [Arabidopsis thaliana] gi|23308443|gb|AAN18191.1| At1g09020/F7G19_11 [Arabidopsis thaliana] gi|75037070|gb|ABA12450.1| AKINbetagamma [Arabidopsis thaliana] gi|332190262|gb|AEE28383.1| sucrose nonfermenting 4-like protein [Arabidopsis thaliana]

 Score =  362 bits (928), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 181/271 (66%), Positives = 208/271 (76%), Gaps = 11/271 (4%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G 
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGR 118

Query: 120 -NMEVDDVVMRP-----EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVN 173
            NM+VDDV +R      E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVN
Sbjct: 119 SNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query: 174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233
           L VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHT
Sbjct: 179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query: 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQV 264
           I+AWK GK  ++  RQ DG+GRP PRPLVQV
Sbjct: 239 IAAWKEGKAHIS--RQYDGSGRPYPRPLVQV 267

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450904|ref|XP_002284480.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 1 [Vitis vinifera]

 Score =  361 bits (926), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 181/274 (66%), Positives = 213/274 (77%), Gaps = 15/274 (5%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ SG  +GHENS + G++L+P RF+WP GGRRV LSGSFTRWSE +PMSP EGCP VFQ
Sbjct: 1   MFVSGAESGHENSAIPGTVLIPTRFVWPYGGRRVLLSGSFTRWSEHIPMSPIEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +I  L PG+HQYKF+VDGEWRHDE+QP VSGNYGVVN +++   +PD+VP   SP+T G 
Sbjct: 61  VIWSLAPGYHQYKFFVDGEWRHDEHQPFVSGNYGVVNTIFLPR-EPDVVPAVFSPDTPGG 119

Query: 120 -NMEVDDVVMRPEG--------FAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTAL 170
            NM++D+    P G          + SEADL++SR R+S FLSTH  YELLP+SGKV AL
Sbjct: 120 SNMDLDNDPF-PRGSSGTLQEVIPRISEADLEVSRHRVSEFLSTHIAYELLPESGKVIAL 178

Query: 171 DVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE 230
           DVNL VKQAFH LYEQG+P+ PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEELE
Sbjct: 179 DVNLPVKQAFHTLYEQGIPVAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELE 238

Query: 231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQV 264
           THTISAWK GKL L   RQ+DG+GR CPR LV  
Sbjct: 239 THTISAWKEGKLHL---RQIDGSGRLCPRHLVHA 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75037079|gb|ABA12451.1| AKINbetagammaI [Arabidopsis thaliana]

 Score =  360 bits (924), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 181/271 (66%), Positives = 208/271 (76%), Gaps = 11/271 (4%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G 
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGR 118

Query: 120 -NMEVDDVVMRP-----EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVN 173
            NM+VDDV +R      E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVN
Sbjct: 119 SNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query: 174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233
           L VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHT
Sbjct: 179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query: 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQV 264
           I+AWK GK  ++  RQ DG+GRP PRPLVQV
Sbjct: 239 IAAWKEGKAHIS--RQYDGSGRPYPRPLVQV 267

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849192|ref|XP_002892477.1| hypothetical protein ARALYDRAFT_470981 [Arabidopsis lyrata subsp. lyrata] gi|297338319|gb|EFH68736.1| hypothetical protein ARALYDRAFT_470981 [Arabidopsis lyrata subsp. lyrata]

 Score =  360 bits (923), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 180/266 (67%), Positives = 207/266 (77%), Gaps = 9/266 (3%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G 
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGR 118

Query: 120 -NMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQ 178
            NM+VDDV +R    A  S  DL++SR RIS  LST T YELLP+SGKV ALDVNL VKQ
Sbjct: 119 SNMDVDDVFLRT---ADPSGVDLEVSRHRISVLLSTRTAYELLPESGKVIALDVNLPVKQ 175

Query: 179 AFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWK 238
           AFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHTI+AWK
Sbjct: 176 AFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHTIAAWK 235

Query: 239 VGKLQLNLKRQMDGNGRPCPRPLVQV 264
            GK  ++  RQ DG+GRP PRPLVQV
Sbjct: 236 EGKAHIS--RQFDGSGRPYPRPLVQV 259

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542654|ref|XP_002512390.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis] gi|223548351|gb|EEF49842.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]

 Score =  359 bits (921), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 178/265 (67%), Positives = 215/265 (81%), Gaps = 9/265 (3%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ SG +TGH ++GV+     P+RF+WP GGR V LSG+FT W++ +PMSP EGCP VFQ
Sbjct: 1   MFGSGQDTGHGSTGVL-----PLRFVWPYGGRSVFLSGTFTGWTDHIPMSPVEGCPTVFQ 55

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWR+DE+QP VSGNYGVVN V++   +P+MVP   + ET+G 
Sbjct: 56  VICSLTPGYHQYKFFVDGEWRYDEHQPSVSGNYGVVNTVFLPR-EPNMVPPIPNSETAGS 114

Query: 120 NMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQA 179
           NME+D+V +RPE   + SEADL++SR R S+FLSTHT YELLP+SGKV ALDVNL VKQA
Sbjct: 115 NMELDEVFLRPEVSPRGSEADLEVSRHRFSAFLSTHTAYELLPESGKVIALDVNLPVKQA 174

Query: 180 FHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKV 239
           FHVLYEQG+P+ PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEELETHTISAWK 
Sbjct: 175 FHVLYEQGVPLAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKE 234

Query: 240 GKLQLNLKRQMDGNGRPCPRPLVQV 264
           GKL LN  RQ+DG+GR  PR L+  
Sbjct: 235 GKLHLN--RQIDGDGRAYPRSLIHA 257

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281727|dbj|BAJ33729.1| unnamed protein product [Thellungiella halophila]

 Score =  350 bits (897), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 176/271 (64%), Positives = 204/271 (75%), Gaps = 11/271 (4%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GV+N ++I     DMVP    PET G 
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVMNTIFIT--GQDMVPTGFIPETLGR 118

Query: 120 -NMEVDDVVMR-----PEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVN 173
            NM+VD V  R      E   + S  DL++SR RIS  LST T YELLP+SGKV ALDVN
Sbjct: 119 ENMDVDGVFPRMTDSPQESIPRMSSVDLEVSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query: 174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233
           L VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHT
Sbjct: 179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query: 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQV 264
           I+AWK GK  ++  RQ DG+GRP PRPLVQV
Sbjct: 239 IAAWKEGKAHIS--RQFDGSGRPYPRPLVQV 267

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432326|ref|XP_002274373.1| PREDICTED: sucrose nonfermenting 4-like protein [Vitis vinifera] gi|297736884|emb|CBI26085.3| unnamed protein product [Vitis vinifera]

 Score =  332 bits (852), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 167/275 (60%), Positives = 199/275 (72%), Gaps = 15/275 (5%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M + G+++  E  GV G++L+P+ F+W  GGR V LSGSFT W+    MSP EGCP VFQ
Sbjct: 1   MLSPGMDSAREGGGVAGTVLIPMNFVWSYGGRSVYLSGSFTGWTNLYQMSPVEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDENQP +S  YG+VN V +A  + D +P TISP     
Sbjct: 61  VICSLTPGYHQYKFFVDGEWRHDENQPFISCTYGIVNTVLLA-RESDYIPPTISPAVPSL 119

Query: 120 -NMEVDDVVM----------RPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVT 168
            NM+VD+             R E   +  E DL++SR R+S FLSTHTVYELLP+SGKV 
Sbjct: 120 TNMDVDNEAFQQLVRISDGSRHEAVPRIQETDLEVSRHRVSLFLSTHTVYELLPESGKVI 179

Query: 169 ALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEE 228
            LDV+L VKQAFH+LYEQG+ + PLWD FKGRFVGVLSALDFILILRELG +GSNLTEEE
Sbjct: 180 TLDVDLPVKQAFHILYEQGISIAPLWDYFKGRFVGVLSALDFILILRELGNHGSNLTEEE 239

Query: 229 LETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQ 263
           LETHTISAWK GK  LN  RQ+DGNGR   R L+ 
Sbjct: 240 LETHTISAWKEGKGYLN--RQIDGNGRAFSRGLIH 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556126|ref|XP_003546378.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max]

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 162/274 (59%), Positives = 201/274 (73%), Gaps = 14/274 (5%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+   +++     GV G++L+P+RF+WP GGR V LSGSFTRW E +PMSP EGCP VFQ
Sbjct: 1   MFGQSMDSARNAGGVAGTVLIPMRFVWPYGGRSVFLSGSFTRWLELLPMSPVEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGN 120
           +I  LPPG+HQYKF+VDGEWRHDE+QP+V G+YG+VN V++A   P+ +P       SGN
Sbjct: 61  VIYNLPPGYHQYKFFVDGEWRHDEHQPYVPGDYGIVNTVFLAT-DPNYIPVLPPDVASGN 119

Query: 121 -MEVDDVVMR----------PEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTA 169
            M+VD+   R           E   + S+ D+Q+SR RIS+FLS+HT YELLP+SGKV A
Sbjct: 120 SMDVDNDAFRRMVRLTDGTLSEVLPRISDTDVQISRQRISAFLSSHTAYELLPESGKVVA 179

Query: 170 LDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEEL 229
           LDV+L VKQAFH+L+EQG+ M PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEEL
Sbjct: 180 LDVDLPVKQAFHILHEQGIFMAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEEL 239

Query: 230 ETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQ 263
           ETHTISAWK GK  LN  RQ +G+G    R  + 
Sbjct: 240 ETHTISAWKEGKSYLN--RQNNGHGTMFSRRFIH 271

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123752|ref|XP_002330199.1| predicted protein [Populus trichocarpa] gi|222871655|gb|EEF08786.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (826), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 164/263 (62%), Positives = 197/263 (74%), Gaps = 9/263 (3%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ SG +TGH+NSGV+     PVRF+WP GG  VS+ G+FTRW + +PMSP EGCP VFQ
Sbjct: 1   MFGSGSSTGHDNSGVI-----PVRFVWPYGGGEVSIFGTFTRWIDLLPMSPVEGCPNVFQ 55

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGN 120
           I+  L PG HQ+KF VDG+WR DE    V G YGVVN V +    P  + N+ +P  S N
Sbjct: 56  IVVSLVPGLHQFKFRVDGQWRVDEQLSFVDGPYGVVNTV-VLTKDPPQILNSETPGRS-N 113

Query: 121 MEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAF 180
           ME+DDV + PE     S  +L++SR RIS+FLSTHT YELLP+SGKV ALDV L VKQAF
Sbjct: 114 MELDDVSVCPEVIQGISATELEVSRHRISAFLSTHTAYELLPESGKVIALDVTLPVKQAF 173

Query: 181 HVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVG 240
           H+LYEQG+PM PLWD  KG+FVGVL+ALDFILILRELGT+GSNLTEEELETHTISAWK G
Sbjct: 174 HILYEQGIPMAPLWDFCKGQFVGVLTALDFILILRELGTHGSNLTEEELETHTISAWKEG 233

Query: 241 KLQLNLKRQMDGNGRPCPRPLVQ 263
           K+ LN  RQ+DG+GR   + L+ 
Sbjct: 234 KMHLN--RQIDGSGRAYSKHLIH 254

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
TAIR|locus:2036079	487	SNF4 "homolog of yeast sucrose	0.959	0.533	0.671	9e-93
MGI|MGI:1336167	270	Prkab1 "protein kinase, AMP-ac	0.509	0.511	0.337	7.7e-16
RGD|71057	270	Prkab1 "protein kinase, AMP-ac	0.509	0.511	0.337	7.7e-16
UNIPROTKB|Q5BIS9	270	PRKAB1 "5'-AMP-activated prote	0.509	0.511	0.344	9.8e-16
UNIPROTKB|E2RH75	270	PRKAB1 "Uncharacterized protei	0.509	0.511	0.337	1.6e-15
UNIPROTKB|Q9Y478	270	PRKAB1 "5'-AMP-activated prote	0.512	0.514	0.346	1.6e-15
UNIPROTKB|Q27IP4	273	PRKAB1 "Uncharacterized protei	0.509	0.505	0.344	4.9e-15
ZFIN|ZDB-GENE-030131-7172	260	prkab1b "protein kinase, AMP-a	0.512	0.534	0.344	5.4e-15
ZFIN|ZDB-GENE-040718-377	268	prkab1a "protein kinase, AMP-a	0.516	0.522	0.326	2.1e-14
UNIPROTKB|F1RL45	270	PRKAB1 "5'-AMP-activated prote	0.509	0.511	0.337	3.8e-14

TAIR|locus:2036079 SNF4 "homolog of yeast sucrose nonfermenting 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
 Identities = 182/271 (67%), Positives = 209/271 (77%)

Query:     1 MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
             M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct:     1 MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query:    61 IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
             +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G 
Sbjct:    61 VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGR 118

Query:   120 -NMEVDDVVMR---P--EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVN 173
              NM+VDDV +R   P  E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVN
Sbjct:   119 SNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query:   174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233
             L VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHT
Sbjct:   179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query:   234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQV 264
             I+AWK GK  ++  RQ DG+GRP PRPLVQV
Sbjct:   239 IAAWKEGKAHIS--RQYDGSGRPYPRPLVQV 267

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0030295 "protein kinase activator activity" evidence=ISS

GO:0042149 "cellular response to glucose starvation" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

MGI|MGI:1336167 Prkab1 "protein kinase, AMP-activated, beta 1 non-catalytic subunit" [Mus musculus (taxid:10090)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 50/148 (33%), Positives = 77/148 (52%)

Query:    22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
             P  F W  GG+ V LSGSF  WS+ +P++ S+     F  I  LP G HQYKF+VDG+W 
Sbjct:    79 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSQNN---FVAILDLPEGEHQYKFFVDGQWT 134

Query:    82 HDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEGFAQYSEAD 140
             HD ++P V+   G VN + I V + D  V + +  ++    +V ++   P G   + E  
Sbjct:   135 HDPSEPIVTSQLGTVNNI-IQVKKTDFEVFDALMVDSQKCSDVSELSSSPPG-PYHQEPY 192

Query:   141 LQLSRDRISS--FLSTHTVYELL-PDSG 165
             +    +R  +   L  H +  +L  D+G
Sbjct:   193 MSKPEERFKAPPILPPHLLQVILNKDTG 220

GO:0004672 "protein kinase activity" evidence=ISO

GO:0004679 "AMP-activated protein kinase activity" evidence=ISO;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=ISO;TAS

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006950 "response to stress" evidence=TAS

GO:0010628 "positive regulation of gene expression" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0019901 "protein kinase binding" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

GO:0051291 "protein heterooligomerization" evidence=ISO

RGD|71057 Prkab1 "protein kinase, AMP-activated, beta 1 non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 50/148 (33%), Positives = 77/148 (52%)

Query:    22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
             P  F W  GG+ V LSGSF  WS+ +P++ S+     F  I  LP G HQYKF+VDG+W 
Sbjct:    79 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSQNN---FVAILDLPEGEHQYKFFVDGQWT 134

Query:    82 HDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEGFAQYSEAD 140
             HD ++P V+   G VN + I V + D  V + +  ++    +V ++   P G   + E  
Sbjct:   135 HDPSEPIVTSQLGTVNNI-IQVKKTDFEVFDALMVDSQKCSDVSELSSSPPG-PYHQEPY 192

Query:   141 LQLSRDRISS--FLSTHTVYELL-PDSG 165
             +    +R  +   L  H +  +L  D+G
Sbjct:   193 ISKPEERFKAPPILPPHLLQVILNKDTG 220

GO:0004672 "protein kinase activity" evidence=ISO

GO:0004679 "AMP-activated protein kinase activity" evidence=IDA;TAS

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006950 "response to stress" evidence=TAS

GO:0010628 "positive regulation of gene expression" evidence=ISO

GO:0019901 "protein kinase binding" evidence=IPI

GO:0031588 "AMP-activated protein kinase complex" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0050790 "regulation of catalytic activity" evidence=IDA

GO:0051291 "protein heterooligomerization" evidence=IDA

UNIPROTKB|Q5BIS9 PRKAB1 "5'-AMP-activated protein kinase subunit beta-1" [Bos taurus (taxid:9913)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 51/148 (34%), Positives = 76/148 (51%)

Query:    22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
             P  F W  GG+ V LSGSF  WS+ +P++ S      F  I  LP G HQYKF+VDG+W 
Sbjct:    79 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSHNN---FVAILDLPEGEHQYKFFVDGQWT 134

Query:    82 HDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEGFAQYSEAD 140
             HD ++P V+   G VN V I V + D  V + +  ++    +V ++   P G   + E  
Sbjct:   135 HDPSEPVVTSQLGTVNNV-IQVKKTDFEVFDALMVDSQKCSDVSELSSSPPG-PYHQEPY 192

Query:   141 LQLSRDRISS--FLSTHTVYELL-PDSG 165
             +    +R  +   L  H +  +L  D+G
Sbjct:   193 ISKPEERFKAPPILPPHLLQVILNKDTG 220

GO:0005634 "nucleus" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

UNIPROTKB|E2RH75 PRKAB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 50/148 (33%), Positives = 76/148 (51%)

Query:    22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
             P  F W  GG+ V LSGSF  WS+ +P++ S      F  I  LP G HQYKF+VDG+W 
Sbjct:    79 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSHNN---FVAILDLPEGEHQYKFFVDGQWT 134

Query:    82 HDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEGFAQYSEAD 140
             HD ++P V+   G VN + I V + D  V + +  ++    +V ++   P G   + E  
Sbjct:   135 HDPSEPIVTSQLGTVNNI-IQVKKTDFEVFDALMVDSQKCSDVSELSSSPPG-PYHQEPY 192

Query:   141 LQLSRDRISS--FLSTHTVYELL-PDSG 165
             +    +R  +   L  H +  +L  D+G
Sbjct:   193 VSKPEERFKAPPILPPHLLQVILNKDTG 220

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9Y478 PRKAB1 "5'-AMP-activated protein kinase subunit beta-1" [Homo sapiens (taxid:9606)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 51/147 (34%), Positives = 74/147 (50%)

Query:    22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
             P  F W  GG+ V LSGSF  WS+ +P++ S      F  I  LP G HQYKF+VDG+W 
Sbjct:    79 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSHNN---FVAILDLPEGEHQYKFFVDGQWT 134

Query:    82 HDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEG-FAQYSEA 139
             HD ++P V+   G VN + I V + D  V + +  ++    +V ++   P G + Q    
Sbjct:   135 HDPSEPIVTSQLGTVNNI-IQVKKTDFEVFDALMVDSQKCSDVSELSSSPPGPYHQEPYV 193

Query:   140 DLQLSRDRISSFLSTHTVYELL-PDSG 165
                  R R    L  H +  +L  D+G
Sbjct:   194 CKPEERFRAPPILPPHLLQVILNKDTG 220

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0004672 "protein kinase activity" evidence=IDA

GO:0010628 "positive regulation of gene expression" evidence=IDA

GO:0007165 "signal transduction" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007050 "cell cycle arrest" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0046320 "regulation of fatty acid oxidation" evidence=TAS

UNIPROTKB|Q27IP4 PRKAB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 194 (73.4 bits), Expect = 4.9e-15, P = 4.9e-15
 Identities = 51/148 (34%), Positives = 77/148 (52%)

Query:    22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
             P  F W  GG+ V LSGSF  WS+ +P++ S      F  I  LP G HQYKF+VDG+W 
Sbjct:    82 PTVFRWTGGGKEVYLSGSFNNWSK-IPLTRSHNN---FVAILDLPEGEHQYKFFVDGQWT 137

Query:    82 HDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEGFAQYSEAD 140
             HD ++P V+   G VN V I V + D  V + +  ++    ++ ++   P G   + E  
Sbjct:   138 HDPSEPVVTSQLGTVNNV-IQVKKTDFEVFDALMVDSQKCSDMSELSSSPPG-PYHQEPY 195

Query:   141 LQLSRDRISS--FLSTHTVYELL-PDSG 165
             +  + +R  S   L  H +  +L  D+G
Sbjct:   196 VCKAEERFKSPPILPPHLLQVILNKDTG 223

GO:0016301 "kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-030131-7172 prkab1b "protein kinase, AMP-activated, beta 1 non-catalytic subunit, b" [Danio rerio (taxid:7955)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 51/148 (34%), Positives = 73/148 (49%)

Query:    22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
             P  F W   G+ + LSGSF  W+  +P++ S      F  I  LP G HQYKFYVDG W 
Sbjct:    68 PTVFRWKGPGKEIYLSGSFNNWATKIPLNKSHNN---FVAIIDLPEGEHQYKFYVDGHWT 124

Query:    82 HDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEGFAQYSEAD 140
              D  +P V+   GVVN V I V + D  V + +  ++    ++ D+   P G   + +  
Sbjct:   125 LDPKEPVVTNKSGVVNNV-IKVRKTDFEVFDALKTDSEKCADMSDLSSSPPG-PYHQDPY 182

Query:   141 LQLSRDRISS--FLSTHTVYELL-PDSG 165
                S D++ S   L  H +  LL  D+G
Sbjct:   183 STKSEDKLRSPPILPPHLLQVLLNKDTG 210

GO:0005575 "cellular_component" evidence=ND

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

ZFIN|ZDB-GENE-040718-377 prkab1a "protein kinase, AMP-activated, beta 1 non-catalytic subunit, a" [Danio rerio (taxid:7955)]

 Score = 190 (71.9 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 48/147 (32%), Positives = 72/147 (48%)

Query:    22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
             P  F W   G+ V +SGSF  W+  +P+  S+     F  I  LP G HQYKFYVDG W 
Sbjct:    76 PTVFRWTGAGKEVYISGSFNNWTNKIPLIRSQNN---FVAIVDLPEGEHQYKFYVDGLWT 132

Query:    82 HDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEG-FAQYSEA 139
             HD  +P V+   G VN + I V + D  V + +  ++    ++ D+   P G + Q +  
Sbjct:   133 HDPTEPVVTNQLGTVNNI-IQVKKTDFEVFDALMVDSQKCSDMSDLSSSPPGPYHQDAYT 191

Query:   140 DLQLSRDRISSFLSTHTVYELL-PDSG 165
               Q  + +    L  H +  +L  D+G
Sbjct:   192 PKQEEKFKSPPILPPHLLQVILNKDTG 218

GO:0005575 "cellular_component" evidence=ND

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

UNIPROTKB|F1RL45 PRKAB1 "5'-AMP-activated protein kinase subunit beta-1" [Sus scrofa (taxid:9823)]

 Score = 189 (71.6 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 50/148 (33%), Positives = 75/148 (50%)

Query:    22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
             P  F W  GG+ V LSGSF  WS+ +P++ S      F  I  LP G HQYKF VDG+W 
Sbjct:    79 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSHNN---FVAILDLPEGEHQYKFLVDGQWT 134

Query:    82 HDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEGFAQYSEAD 140
             HD ++P V+   G VN + I V + D  V + +  ++    +V ++   P G   + E  
Sbjct:   135 HDPSEPVVTSQLGTVNNI-IQVKKTDFEVFDALMVDSQKCSDVSELSSSPPG-PYHQEPY 192

Query:   141 LQLSRDRISS--FLSTHTVYELL-PDSG 165
             +    +R  +   L  H +  +L  D+G
Sbjct:   193 VWKPEERFKAPPILPPHLLQVILNKDTG 220

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	SNF4	SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator; putative activator subunit of SNF1-related protein kinase (487 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AKIN11	AKIN11 (Arabidopsis SNF1 kinase homolog 11); protein binding / protein kinase; encodes a SNF1-r [...] (512 aa)					•		•		0.998
	AKIN10	AKIN10 (Arabidopsis SNF1 kinase homolog 10); protein binding / protein kinase; encodes a SNF1-r [...] (535 aa)				•	•		•		0.995
	SnRK1.3	SnRK1.3 (SNF1-RELATED PROTEIN KINASE 1.3); ATP binding / kinase/ protein kinase/ protein serine [...] (494 aa)							•		0.944
	AT5G21170	5'-AMP-activated protein kinase beta-2 subunit, putative; 5'-AMP-activated protein kinase beta- [...] (320 aa)					•		•		0.935
	AT2G28060	protein kinase-related; protein kinase-related; FUNCTIONS IN- molecular_function unknown; INVOL [...] (114 aa)					•		•		0.911
	DL4210W	AMP-activated protein kinase; AMP-activated protein kinase; FUNCTIONS IN- AMP-activated protein [...] (259 aa)					•		•	•	0.879
	XRCC4	XRCC4; protein C-terminus binding; A. thaliana homologue of the human DNA ligase IV-binding pro [...] (264 aa)					•				0.869
	AT3G55840	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (428 aa)					•				0.859
	HSPRO2	HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2); ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 [...] (435 aa)					•				0.859
	CINV1	CINV1 (cytosolic invertase 1); beta-fructofuranosidase; Encodes a protein with cytosolic (alkal [...] (551 aa)					•				0.859

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	271
cd02859	80	cd02859, E_set_AMPKbeta_like_N, N-terminal Early s	6e-27
cd04618	98	cd04618, CBS_pair_5, The CBS domain, named after h	2e-16
cd07184	86	cd07184, E_set_Isoamylase_like_N, N-terminal Early	1e-06
cd02688	82	cd02688, E_set, Early set domain associated with t	5e-06

>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit

 Score = 99.6 bits (249), Expect = 6e-27
 Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 3/77 (3%)

Query: 22 PVRFIWPN-GGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEW 80
          PV F WP  GG+ V ++GSF  W +P+P+  S      F     LPPG ++YKF VDGEW
Sbjct: 1  PVTFRWPGPGGKEVYVTGSFDNWQQPIPLEKSGDG--EFSATVELPPGRYEYKFIVDGEW 58

Query: 81 RHDENQPHVSGNYGVVN 97
           HD + P V+  +G +N
Sbjct: 59 VHDPDLPTVTDEFGNLN 75

E or "early" set domains are associated with the catalytic domain of AMP-activated protein kinase beta subunit glycogen binding domain at the N-terminal end. AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as an alpha-beta-gamma heterotrimer. This N-terminal domain is the glycogen binding domain of the beta subunit. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and isoamylase. Length = 80

>gnl|CDD|239990 cd04618, CBS_pair_5, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 72.7 bits (179), Expect = 2e-16
 Identities = 26/51 (50%), Positives = 33/51 (64%)

Query: 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215
            K+   D  L VK+AF+ L E G+   PLWD  K +FVG+L+  DFILILR
Sbjct: 1   SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 98

>gnl|CDD|199892 cd07184, E_set_Isoamylase_like_N, N-terminal Early set domain associated with the catalytic domain of isoamylase-like (also called glycogen 6-glucanohydrolase) proteins

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 21 VPVRFIWPN--GGRRVSLSGSFTRWS-EPMPMSPS-EGCPAVFQIICRLPPG-HHQYKFY 75
            V F  P   G   VSL G F  W  +  PM     G    F     LP G  +Q+++ 
Sbjct: 1  CKVTFELPAEQGADSVSLVGDFNDWDPQATPMKKLKNG---TFSATLDLPAGREYQFRYL 57

Query: 76 VDGE-WRHDENQP-HVSGNYGVVNCV 99
          +DGE W +D     +    +G  N V
Sbjct: 58 IDGERWVNDPEADAYAPNGFGEENSV 83

E or "early" set domains are associated with the catalytic domain of isoamylase-like proteins at the N-terminal end. Isoamylase is one of the starch-debranching enzymes that catalyze the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminal domain of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and the beta subunit of AMP-activated protein kinase. Length = 86

>gnl|CDD|199878 cd02688, E_set, Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

 Score = 43.3 bits (102), Expect = 5e-06
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 22 PVRF-IWPNGGRRVSLSGSFTRWSE--PMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDG 78
           V F I+  G + V L GSF  W +   +PM+ + G   V+     LP G ++YK+ +DG
Sbjct: 1  GVTFRIFAPGAKSVYLIGSFNGWWQAQALPMTKNGG--GVWSATIPLPLGTYEYKYVIDG 58

Query: 79 EWRHDE 84
                
Sbjct: 59 GKNVLP 64

The E or "early" set domains of sugar utilizing enzymes are associated with different types of catalytic domains at either the N-terminal or C-terminal end. These domains may be related to the immunoglobulin and/or fibronectin type III superfamilies. Members of this family include alpha amylase, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. A subset of these members were recently identified as members of the CBM48 (Carbohydrate Binding Module 48) family. Members of the CBM48 family include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, isoamylase, and the beta subunit of AMP-activated protein kinase. Length = 82

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	271
cd02859	79	AMPKbeta_GBD_like AMP-activated protein kinase (AM	99.92
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.8
cd02861	82	E_set_proteins_like E or "early" set-like proteins	99.79
KOG1616	289	consensus Protein involved in Snf1 protein kinase	99.67
cd02858	85	Esterase_N_term Esterase N-terminal domain. Estera	99.27
cd02688	83	E_set E or "early" set of sugar utilizing enzymes	98.84
cd02854	99	Glycogen_branching_enzyme_like_N_term Glycogen bra	98.48
PF02922	85	CBM_48: Carbohydrate-binding module 48 (Isoamylase	98.33
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.06
cd02860	100	Pullulanase_N_term Pullulanase domain N-terminus.	97.92
PF00686	96	CBM_20: Starch binding domain; InterPro: IPR002044	97.75
cd05808	95	CBM20_alpha_amylase Alpha-amylase, C-terminal CBM2	97.71
cd02855	106	Glycogen_branching_enzyme_N_term Glycogen branchin	97.71
cd02856	103	Glycogen_debranching_enzyme_N_term Glycogen_debran	97.64
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	97.63
COG0296	628	GlgB 1,4-alpha-glucan branching enzyme [Carbohydra	97.52
PRK12568	730	glycogen branching enzyme; Provisional	97.33
PLN02447	758	1,4-alpha-glucan-branching enzyme	97.32
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	97.3
cd05818	92	CBM20_water_dikinase Phosphoglucan water dikinase	97.29
PRK12313	633	glycogen branching enzyme; Provisional	97.24
cd02852	119	Isoamylase_N_term Isoamylase N-terminus domain. Is	97.21
cd05813	95	CBM20_genethonin_1 Genethonin-1, C-terminal CBM20	97.17
PRK14706	639	glycogen branching enzyme; Provisional	97.16
cd05809	99	CBM20_beta_amylase Beta-amylase, C-terminal CBM20	97.1
PRK14705	1224	glycogen branching enzyme; Provisional	97.05
cd05820	103	CBM20_novamyl Novamyl (also known as acarviose tra	97.05
cd05814	120	CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-	97.01
PRK05402	726	glycogen branching enzyme; Provisional	96.89
TIGR02402	542	trehalose_TreZ malto-oligosyltrehalose trehalohydr	96.87
cd02853	85	MTHase_N_term Maltooligosyl trehalose synthase (MT	96.74
cd05811	106	CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-g	96.72
cd05467	96	CBM20 The family 20 carbohydrate-binding module (C	96.6
cd05817	100	CBM20_DSP Dual-specificity phosphatase (DSP), N-te	96.57
cd05816	99	CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DP	96.56
COG2524	294	Predicted transcriptional regulator, contains C-te	96.51
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	96.48
PRK05402	726	glycogen branching enzyme; Provisional	96.47
cd05807	101	CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrat	96.31
TIGR01515	613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	96.14
cd05810	97	CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrol	96.12
PF11806	122	DUF3327: Domain of unknown function (DUF3327); Int	95.91
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	95.73
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	95.67
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	95.64
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	95.56
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	95.49
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	95.47
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	95.34
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	95.29
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	95.27
cd05815	101	CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DP	95.22
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	95.14
cd05806	112	CBM20_laforin Laforin protein tyrosine phosphatase	95.1
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	95.08
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	95.06
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	95.01
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	94.99
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	94.99
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	94.97
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	94.94
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	94.94
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	94.84
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	94.82
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	94.8
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	94.79
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	94.75
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	94.72
TIGR02104	605	pulA_typeI pullulanase, type I. Pullulan is an unu	94.67
PF03423	87	CBM_25: Carbohydrate binding domain (family 25); I	94.63
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	94.62
PLN02316	1036	synthase/transferase	94.57
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	94.55
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	94.52
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	94.51
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	94.49
PRK10439	411	enterobactin/ferric enterobactin esterase; Provisi	94.47
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	94.46
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	94.45
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	94.45
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	94.43
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	94.38
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	94.33
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	94.3
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	94.27
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	94.27
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	94.24
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	94.23
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	94.21
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	94.14
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	94.13
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	94.09
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	94.07
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	94.07
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	94.03
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	94.03
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	94.02
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	93.96
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	93.94
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	93.93
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	93.9
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	93.89
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	93.87
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	93.81
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	93.78
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	93.77
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	93.72
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	93.71
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	93.7
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	93.67
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	93.65
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	93.65
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	93.6
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	93.59
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	93.56
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	93.47
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	93.46
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	93.41
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	93.4
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	93.39
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	93.37
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	93.29
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	93.27
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	93.25
PLN02960	897	alpha-amylase	93.12
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	93.06
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	93.05
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	93.02
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	92.88
PLN02950	909	4-alpha-glucanotransferase	92.79
PLN02950	909	4-alpha-glucanotransferase	92.73
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	92.73
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	92.69
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	92.68
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	92.66
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	92.65
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	92.63
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	92.58
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	92.52
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	92.51
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	92.48
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	92.37
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	92.35
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	92.34
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	92.2
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	92.19
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	92.13
PLN02316	1036	synthase/transferase	92.01
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	92.0
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	91.91
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	91.88
COG0517	117	FOG: CBS domain [General function prediction only]	91.84
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	91.78
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	91.71
TIGR02100	688	glgX_debranch glycogen debranching enzyme GlgX. Th	91.69
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	91.63
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	91.58
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	91.47
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	91.41
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	91.38
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	91.32
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	91.31
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	91.31
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	91.31
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	91.18
COG3448	382	CBS-domain-containing membrane protein [Signal tra	91.08
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	91.05
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	91.04
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	90.99
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	90.91
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	90.89
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	90.83
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	90.74
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	90.61
TIGR02102	1111	pullulan_Gpos pullulanase, extracellular, Gram-pos	90.57
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	90.38
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	89.85
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	89.85
PRK03705	658	glycogen debranching enzyme; Provisional	89.55
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	89.36
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	89.23
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	89.08
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	89.07
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	89.05
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	88.72
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	88.45
PRK11573	413	hypothetical protein; Provisional	87.77
COG0517	117	FOG: CBS domain [General function prediction only]	87.48
TIGR02103	898	pullul_strch alpha-1,6-glucosidases, pullulanase-t	87.45
PLN02274	505	inosine-5'-monophosphate dehydrogenase	86.97
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	86.48
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	86.44
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	86.25
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	85.83
PRK14869	546	putative manganese-dependent inorganic pyrophospha	85.79
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	84.0
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	83.84
PRK01862	574	putative voltage-gated ClC-type chloride channel C	83.82
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	83.78
cd02857	116	CD_pullulan_degrading_enzymes_N_term CD and pullul	83.71
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	82.01
PLN03244	872	alpha-amylase; Provisional	81.61
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	81.57
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	81.16
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	80.97
PRK01862	574	putative voltage-gated ClC-type chloride channel C	80.5
PRK14869	546	putative manganese-dependent inorganic pyrophospha	80.17

>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD)

Probab=99.92  E-value=4.5e-25  Score=168.01  Aligned_cols=79  Identities=46%  Similarity=0.944  Sum_probs=73.9

Q ss_pred             ceEEEEEecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeeecCCCCCeeeCCCCccccE
Q 024154           20 LVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV   99 (271)
Q Consensus        20 ~vpVtF~w~~~ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~LppG~yeYKFiVDG~W~~Dp~~P~v~d~~G~~NNv   99 (271)
                      .++|+|+|.++|++|+|+|||++|++..||.+..  .+ |++++.||||.|+|||+|||+|.+||++|++.|++|+.||+
T Consensus         1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~--~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~   77 (79)
T cd02859           1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSG--KG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNV   77 (79)
T ss_pred             CeEEEEEEcCCCcEEEEEEEcCCCCccccceECC--CC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeee
Confidence            4799999999999999999999999878999875  34 99999999999999999999999999999999999999999


Q ss_pred             EE
Q 024154          100 YI  101 (271)
Q Consensus       100 l~  101 (271)
                      |+
T Consensus        78 i~   79 (79)
T cd02859          78 ID   79 (79)
T ss_pred             EC
Confidence            84

AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.80  E-value=6.2e-20  Score=176.41  Aligned_cols=120  Identities=35%  Similarity=0.534  Sum_probs=105.4

Q ss_pred             HhHHHHHHhhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhccCC-
Q 024154          143 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG-  221 (271)
Q Consensus       143 ~~~~~~~~fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~~~~-  221 (271)
                      .....+.+||+.|+||+++|++.|+++||+.++|++||++|++++++++|+||+.+++|+||+|++|||.+|+++|+.+ 
T Consensus        54 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~  133 (381)
T KOG1764|consen   54 NAVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKS  133 (381)
T ss_pred             chhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCC
Confidence            3556899999999999999999999999999999999999999999999999999999999999999999999999863 


Q ss_pred             CCcchhhhhccchhHHHHHHHhhhhcccCCCCCCCCCCCceEecCCCCCC
Q 024154          222 SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQVSASSVSF  271 (271)
Q Consensus       222 ~~~~~~~le~~~I~~~re~~~~~~~~~~~~~~~~~~~~plv~i~p~~~l~  271 (271)
                      .....+.++++.+..||+....+..         ...++|++++|+.++|
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~p~~s~l  174 (381)
T KOG1764|consen  134 SLDNIEVLEDSQLSKRREVECLLKE---------TLKPPFVSISPESSLL  174 (381)
T ss_pred             cHHHHhhhhhhhccccchhhhhhcc---------ccCCCceeecCcHHHH
Confidence            3346899999999999998555431         2456669999998764

>cd02861 E_set_proteins_like E or "early" set-like proteins

Probab=99.79  E-value=4.7e-19  Score=135.15  Aligned_cols=78  Identities=37%  Similarity=0.752  Sum_probs=69.7

Q ss_pred             eEEEEEecCC-CceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeee-cCCCCCe-eeCCCCccc
Q 024154           21 VPVRFIWPNG-GRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR-HDENQPH-VSGNYGVVN   97 (271)
Q Consensus        21 vpVtF~w~~~-ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~LppG~yeYKFiVDG~W~-~Dp~~P~-v~d~~G~~N   97 (271)
                      ++|+|+|.++ +++|+|+|+|++|+ ..+|++.+  +|.|++++.|++|.|+|||+|||.|. +||.++. ..|+.|+.|
T Consensus         2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~~--~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n   78 (82)
T cd02861           2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMEREG--DGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKN   78 (82)
T ss_pred             ccEEEEEECCCCCEEEEEeECCCCC-cccCEECC--CCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccc
Confidence            5799999875 69999999999998 47999864  69999999999999999999999998 9999986 668899999


Q ss_pred             cEEE
Q 024154           98 CVYI  101 (271)
Q Consensus        98 Nvl~  101 (271)
                      |+|.
T Consensus        79 ~v~~   82 (82)
T cd02861          79 AVFV   82 (82)
T ss_pred             eEcC
Confidence            9873

These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]

Probab=99.67  E-value=1.5e-16  Score=148.11  Aligned_cols=89  Identities=36%  Similarity=0.690  Sum_probs=80.8

Q ss_pred             CCCcceEEEEEecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeeecCCCCCeeeCCCCc
Q 024154           16 VGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGV   95 (271)
Q Consensus        16 ~~~~~vpVtF~w~~~ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~LppG~yeYKFiVDG~W~~Dp~~P~v~d~~G~   95 (271)
                      ......+++|+|..+++.|+|+|+|.||+..++|.+..+..|.|.+++.|++|.|+|||+|||+|++|++.|++.|..|+
T Consensus        75 ~~~~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn  154 (289)
T KOG1616|consen   75 DREQGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGN  154 (289)
T ss_pred             ccccCCceEEEecCCCceEEEecccccccccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccccCC
Confidence            34457999999999999999999999999889998875444559999999999999999999999999999999999999


Q ss_pred             cccEEEecC
Q 024154           96 VNCVYIAVP  104 (271)
Q Consensus        96 ~NNvl~V~~  104 (271)
                      .||++.|..
T Consensus       155 ~~N~i~v~~  163 (289)
T KOG1616|consen  155 LNNILEVQD  163 (289)
T ss_pred             cccceEecC
Confidence            999999933

>cd02858 Esterase_N_term Esterase N-terminal domain

Probab=99.27  E-value=2.5e-11  Score=93.39  Aligned_cols=76  Identities=26%  Similarity=0.377  Sum_probs=63.0

Q ss_pred             EEEEEe-cCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCeeecCCCCCeeeCCCCccccE
Q 024154           22 PVRFIW-PNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV   99 (271)
Q Consensus        22 pVtF~w-~~~ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVDG~W~~Dp~~P~v~d~~G~~NNv   99 (271)
                      .++|+. ...|++|.|.|+|++|.. .+|++.+  +|+|++++. |.+|.|+|+|+|||.++.||.++...-..+...|.
T Consensus         7 ~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~~--~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~   83 (85)
T cd02858           7 TVTFRLFAPKANEVQVRGSWGGAGS-HPMTKDE--AGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSG   83 (85)
T ss_pred             cEEEEEECCCCCEEEEEeecCCCcc-EeCeECC--CeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeeccccccee
Confidence            578876 457999999999998864 7999875  799999984 88899999999999999999999877555555444


Q ss_pred             E
Q 024154          100 Y  100 (271)
Q Consensus       100 l  100 (271)
                      +
T Consensus        84 ~   84 (85)
T cd02858          84 V   84 (85)
T ss_pred             e
Confidence            3

Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies

Probab=98.84  E-value=1.4e-08  Score=74.90  Aligned_cols=70  Identities=33%  Similarity=0.527  Sum_probs=59.0

Q ss_pred             eEEEEEecC-CCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCC-ceEEEEEEEcCeeecCCCCCeeeCC
Q 024154           21 VPVRFIWPN-GGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPP-GHHQYKFYVDGEWRHDENQPHVSGN   92 (271)
Q Consensus        21 vpVtF~w~~-~ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~Lpp-G~yeYKFiVDG~W~~Dp~~P~v~d~   92 (271)
                      ..++|++.. ++++|.|.++|++|....+|.+.+  .|.|++.+.+.. +.|.|+|+|||.|.+++.++...+.
T Consensus         4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~~--~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~   75 (83)
T cd02688           4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKVE--DGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEG   75 (83)
T ss_pred             ccEEEEEECCCCCEEEEEEEECCCCCcccCEECC--CceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcC
Confidence            467888865 689999999999976678998865  699999999887 9999999999999999888655543

These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain

Probab=98.48  E-value=8e-07  Score=70.56  Aligned_cols=67  Identities=25%  Similarity=0.446  Sum_probs=50.7

Q ss_pred             EEEEEe-cCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEec--------CCc-eEEEEEEE-cCee--ecCCCCC
Q 024154           22 PVRFIW-PNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL--------PPG-HHQYKFYV-DGEW--RHDENQP   87 (271)
Q Consensus        22 pVtF~w-~~~ak~V~V~GsF~nW~~~-ipM~k~~~~~g~f~~~~~L--------ppG-~yeYKFiV-DG~W--~~Dp~~P   87 (271)
                      .++|+. ...|++|+|+|+||+|+.. .+|.|.+  .|+|+++++.        +.| .|.|++.. ||+|  +.||...
T Consensus         6 g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~--~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~   83 (99)
T cd02854           6 GVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDE--FGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIK   83 (99)
T ss_pred             eEEEEEECCCCCEEEEEccCCCCCCcCcccEECC--CCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCccee
Confidence            466764 5689999999999999863 6899875  7999999874        344 56666666 7876  6787766


Q ss_pred             eee
Q 024154           88 HVS   90 (271)
Q Consensus        88 ~v~   90 (271)
                      .+.
T Consensus        84 ~~~   86 (99)
T cd02854          84 YVT   86 (99)
T ss_pred             EEE
Confidence            544

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi

>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3

Probab=98.33  E-value=3.1e-07  Score=69.38  Aligned_cols=57  Identities=30%  Similarity=0.596  Sum_probs=44.5

Q ss_pred             eEEEEEe-cCCCceEEEEeccCC-CCCC-CCCC-CCCCCCCeEEEEEe--cCCceEEEEEEEcCe
Q 024154           21 VPVRFIW-PNGGRRVSLSGSFTR-WSEP-MPMS-PSEGCPAVFQIICR--LPPGHHQYKFYVDGE   79 (271)
Q Consensus        21 vpVtF~w-~~~ak~V~V~GsF~n-W~~~-ipM~-k~~~~~g~f~~~~~--LppG~yeYKFiVDG~   79 (271)
                      ..++|+. ...|++|.|++.|++ |... ++|. +.+  .|+|++++.  +++|.++|+|+|||.
T Consensus        11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~--~G~w~~~~~~~~~~g~~~Y~y~i~~~   73 (85)
T PF02922_consen   11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDD--DGVWEVTVPGDLPPGGYYYKYRIDGD   73 (85)
T ss_dssp             TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECT--TTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred             CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCC--CCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence            3567765 568999999999999 8653 6998 444  799999998  888888888888764

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.06  E-value=1.1e-05  Score=55.85  Aligned_cols=49  Identities=20%  Similarity=0.461  Sum_probs=46.6

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      +++.++.+.++++|+..|.++++..+|+.|.. ++++|++|..|+++.|.
T Consensus         8 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    8 PPITVSPDDSLEEALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKALL   56 (57)
T ss_dssp             SSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHHHH
T ss_pred             CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhhhh
Confidence            78999999999999999999999999999988 99999999999999774

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>cd02860 Pullulanase_N_term Pullulanase domain N-terminus

Probab=97.92  E-value=3.6e-05  Score=60.30  Aligned_cols=66  Identities=20%  Similarity=0.238  Sum_probs=49.9

Q ss_pred             EEEE-EecCCCceEEEEeccCCCC-----CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCe-----eecCCCCCee
Q 024154           22 PVRF-IWPNGGRRVSLSGSFTRWS-----EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-----WRHDENQPHV   89 (271)
Q Consensus        22 pVtF-~w~~~ak~V~V~GsF~nW~-----~~ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVDG~-----W~~Dp~~P~v   89 (271)
                      -++| .|...|++|.|+. |++|.     ..++|.+.+  .|+|++.+. +.+|. .|+|.|+|.     ...||....+
T Consensus         9 ~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~--~gvw~~~v~~~~~g~-~Y~y~i~~~~~~~~~~~DPyA~~~   84 (100)
T cd02860           9 KTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGE--NGVWSVTLDGDLEGY-YYLYEVKVYKGETNEVVDPYAKAL   84 (100)
T ss_pred             CEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCC--CCEEEEEeCCccCCc-EEEEEEEEeceEEEEEcCcccEeE
Confidence            3677 4667899999998 88886     346898854  799999987 45555 488888775     7888888776


Q ss_pred             eC
Q 024154           90 SG   91 (271)
Q Consensus        90 ~d   91 (271)
                      ..
T Consensus        85 ~~   86 (100)
T cd02860          85 SA   86 (100)
T ss_pred             ee
Confidence            63

Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3

Probab=97.75  E-value=6.8e-05  Score=58.42  Aligned_cols=56  Identities=29%  Similarity=0.561  Sum_probs=46.6

Q ss_pred             eEEEEEecC---CCceEEEEeccC---CCCC--CCCCCCCCC--CCCeEEEEEecCCc-eEEEEEEE
Q 024154           21 VPVRFIWPN---GGRRVSLSGSFT---RWSE--PMPMSPSEG--CPAVFQIICRLPPG-HHQYKFYV   76 (271)
Q Consensus        21 vpVtF~w~~---~ak~V~V~GsF~---nW~~--~ipM~k~~~--~~g~f~~~~~LppG-~yeYKFiV   76 (271)
                      +.|+|....   .++.|+|+||..   +|++  .++|...++  ....|++++.||.+ .++|||++
T Consensus         2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i   68 (96)
T PF00686_consen    2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI   68 (96)
T ss_dssp             EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence            678999964   589999999998   7987  478887532  35799999999997 69999999

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....

>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.71  E-value=0.00014  Score=56.19  Aligned_cols=54  Identities=28%  Similarity=0.482  Sum_probs=43.7

Q ss_pred             eEEEEEecC---CCceEEEEec---cCCCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 024154           21 VPVRFIWPN---GGRRVSLSGS---FTRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (271)
Q Consensus        21 vpVtF~w~~---~ak~V~V~Gs---F~nW~~~--ipM~k~~~~~g~f~~~~~LppG-~yeYKFiV   76 (271)
                      ++|+|..++   .+++|+|+|+   +.+|++.  ++|...+  .+.|++++.||++ .++|||++
T Consensus         1 v~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~--~~~W~~~v~l~~~~~~eYKy~~   63 (95)
T cd05808           1 VAVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAAT--YPVWSGTVDLPAGTAIEYKYIK   63 (95)
T ss_pred             CeEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCC--CCCEEEEEEeCCCCeEEEEEEE
Confidence            467888764   4789999995   7799864  5888754  5789999999986 69999997

This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo

>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain

Probab=97.71  E-value=0.00023  Score=55.42  Aligned_cols=68  Identities=28%  Similarity=0.506  Sum_probs=45.6

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCC-CCCCCCCCCCCCeEEEEEe-cCCc-eEEEEEEEc-Ce--eecCCCCCeeeC
Q 024154           23 VRFI-WPNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICR-LPPG-HHQYKFYVD-GE--WRHDENQPHVSG   91 (271)
Q Consensus        23 VtF~-w~~~ak~V~V~GsF~nW~~-~ipM~k~~~~~g~f~~~~~-LppG-~yeYKFiVD-G~--W~~Dp~~P~v~d   91 (271)
                      ++|+ |..+|++|.|+++|++|.. ..+|.+.+. .|.|.+.+. +++| .|.|++..+ |.  .+.||....++.
T Consensus        23 ~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~-~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~~~~~   97 (106)
T cd02855          23 VRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRGD-SGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAFYSEL   97 (106)
T ss_pred             EEEEEECCCCCEEEEEEECCCCCCcceecEECCC-CCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCceeeEe
Confidence            5565 4568999999999999964 358987542 789998886 5666 444444443 32  356666654443

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina

>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain

Probab=97.64  E-value=0.00018  Score=56.76  Aligned_cols=53  Identities=21%  Similarity=0.425  Sum_probs=40.7

Q ss_pred             EEE-EecCCCceEEEEeccCCCC--CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCe
Q 024154           23 VRF-IWPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE   79 (271)
Q Consensus        23 VtF-~w~~~ak~V~V~GsF~nW~--~~ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVDG~   79 (271)
                      ++| .|...|++|.|+. |+++.  ..++|++.+  .|+|.+.+. +.+|. .|+|.|||.
T Consensus        11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~--~GvW~~~v~~~~~g~-~Y~y~i~g~   67 (103)
T cd02856          11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEEY--GGVWHGFLPGIKAGQ-RYGFRVHGP   67 (103)
T ss_pred             eEEEEECCCCCEEEEEE-EeCCCCEEEEEccccc--CCEEEEEECCCCCCC-EEEEEECCc
Confidence            567 5677899999998 66664  246898765  799999985 56665 799999993

Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.63  E-value=0.0001  Score=56.87  Aligned_cols=51  Identities=51%  Similarity=0.891  Sum_probs=47.4

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      .++++++.+.++++|+..|.++++.+.|++|.+.++++||+|..|++.++.
T Consensus         1 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~   51 (98)
T cd04618           1 SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR   51 (98)
T ss_pred             CeEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee
Confidence            478999999999999999999999999999987789999999999998765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

Probab=97.52  E-value=0.00018  Score=73.74  Aligned_cols=161  Identities=21%  Similarity=0.264  Sum_probs=92.6

Q ss_pred             eEEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCe-----eecCCCCCeeeCC
Q 024154           21 VPVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-----WRHDENQPHVSGN   92 (271)
Q Consensus        21 vpVtF~-w~~~ak~V~V~GsF~nW~~~-ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVDG~-----W~~Dp~~P~v~d~   92 (271)
                      ..++|+ |..+|+.|.|+|+||+|... .+|.... ..|+|++++. +++| +.|||.+++.     ++.||..-.....
T Consensus        36 ~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~-~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a~~~~~~  113 (628)
T COG0296          36 SGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRK-ESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYARRQEVG  113 (628)
T ss_pred             CceEEEEECCCCCeEEEEeecCCccceecccccCC-CCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchhhccCCC
Confidence            456675 67899999999999999873 4555433 3799999998 9999 9999999653     3666665444433


Q ss_pred             CCccccEEEecCCCCCCCC----CCCC-CCCCCcccc-ccccCCCCCCC---CcHHHHHHhHHHHHHhhhhccccccCCC
Q 024154           93 YGVVNCVYIAVPQPDMVPN----TISP-ETSGNMEVD-DVVMRPEGFAQ---YSEADLQLSRDRISSFLSTHTVYELLPD  163 (271)
Q Consensus        93 ~G~~NNvl~V~~~~~~~p~----~~~~-~~~~~m~~~-~~~~~~e~~pr---~s~~~~~~~~~~~~~fl~~~tcYd~lP~  163 (271)
                      -++..-|.   ..+++.=.    -... ..+.+ ++. =+.|. .++.+   ..-.|+.+.+-+|-.-| --||=+|||.
T Consensus       114 p~~aS~v~---~~~~y~W~d~~~~~~~~~~~~e-~~vIYElHv-Gs~~~~~~~~~~e~a~~llpYl~el-G~T~IELMPv  187 (628)
T COG0296         114 PHTASQVV---DLPDYEWQDERWDRAWRGRFWE-PIVIYELHV-GSFTPDRFLGYFELAIELLPYLKEL-GITHIELMPV  187 (628)
T ss_pred             CCCcceec---CCCCcccccccccccccCCCCC-CceEEEEEe-eeccCCCCcCHHHHHHHHhHHHHHh-CCCEEEEccc
Confidence            22222122   22222111    0000 01111 111 11221 11111   34556666666666666 6799999998


Q ss_pred             CCC---------eEE-------EcccchHHHHHHHHHHcCCC
Q 024154          164 SGK---------VTA-------LDVNLAVKQAFHVLYEQGLP  189 (271)
Q Consensus       164 s~k---------~vv-------~D~~l~v~~Af~al~~~g~~  189 (271)
                      +.-         .+-       +-+-=-.|+-+.+++++||.
T Consensus       188 ~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIg  229 (628)
T COG0296         188 AEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIG  229 (628)
T ss_pred             ccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCE
Confidence            743         111       11222367777888888884

>PRK12568 glycogen branching enzyme; Provisional

Probab=97.33  E-value=0.00053  Score=71.54  Aligned_cols=66  Identities=26%  Similarity=0.579  Sum_probs=50.0

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEE---cCee--ecCCCCCeee
Q 024154           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYV---DGEW--RHDENQPHVS   90 (271)
Q Consensus        22 pVtF~-w~~~ak~V~V~GsF~nW~~~-ipM~k~~~~~g~f~~~~~-LppG~yeYKFiV---DG~W--~~Dp~~P~v~   90 (271)
                      -|+|+ |...|++|+|+|+||+|... .+|.+.+  .|+|++.++ +.+| ..|||.|   ||.+  +.||....+.
T Consensus       139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~--~GVWelfipg~~~G-~~YKYeI~~~~G~~~~k~DPYA~~~e  212 (730)
T PRK12568        139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRI--GGFWELFLPRVEAG-ARYKYAITAADGRVLLKADPVARQTE  212 (730)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCccceecccCC--CCEEEEEECCCCCC-CEEEEEEEcCCCeEeecCCCcceEee
Confidence            46785 56689999999999999864 6898753  799999986 6666 3567776   7865  4677766544

>PLN02447 1,4-alpha-glucan-branching enzyme

Probab=97.32  E-value=0.00055  Score=71.66  Aligned_cols=65  Identities=23%  Similarity=0.418  Sum_probs=47.3

Q ss_pred             EEEE-EecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEec-------CCceEEEEEEEc---Ce--eecCCCCC
Q 024154           22 PVRF-IWPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL-------PPGHHQYKFYVD---GE--WRHDENQP   87 (271)
Q Consensus        22 pVtF-~w~~~ak~V~V~GsF~nW~~~-ipM~k~~~~~g~f~~~~~L-------ppG~yeYKFiVD---G~--W~~Dp~~P   87 (271)
                      .++| .|..+|++|+|+|+||+|... .+|++.+  .|+|++.++-       +.| ..|||.|.   |.  .+.||-..
T Consensus       115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~~--~GvWe~~ip~~~g~~~~~~G-~~Yky~i~~~~g~~~~r~dpya~  191 (758)
T PLN02447        115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKNE--FGVWEIFLPDADGSPAIPHG-SRVKIRMETPDGRWVDRIPAWIK  191 (758)
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCCCccCceeCC--CCEEEEEECCccccccCCCC-CEEEEEEEeCCCcEEeecCchHh
Confidence            3455 467789999999999999864 6999865  7999999863       334 36777773   54  46777654


Q ss_pred             ee
Q 024154           88 HV   89 (271)
Q Consensus        88 ~v   89 (271)
                      .+
T Consensus       192 ~~  193 (758)
T PLN02447        192 YA  193 (758)
T ss_pred             ee
Confidence            43

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.30  E-value=0.0005  Score=54.32  Aligned_cols=50  Identities=28%  Similarity=0.481  Sum_probs=45.9

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      +++++++.+.++++|+..|.++++..+|++|.. ++++||+|..|+++.+.
T Consensus         1 ~~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~   50 (126)
T cd04642           1 SKVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLL   50 (126)
T ss_pred             CCeEEECCCccHHHHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhc
Confidence            468899999999999999999999999999976 89999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.29  E-value=0.0022  Score=49.90  Aligned_cols=53  Identities=25%  Similarity=0.389  Sum_probs=44.2

Q ss_pred             eEEEEEecC---CCceEEEEeccC---CCCCCCCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 024154           21 VPVRFIWPN---GGRRVSLSGSFT---RWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (271)
Q Consensus        21 vpVtF~w~~---~ak~V~V~GsF~---nW~~~ipM~k~~~~~g~f~~~~~LppG-~yeYKFiV   76 (271)
                      +.++|+.++   -|+.++|+|+-.   +|++..+|...   .+.|++.+.+|++ ..+|||++
T Consensus         2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~---~~~W~~~~~l~~~~~ieyKy~~   61 (92)
T cd05818           2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWT---ENGWVCDLELDGGELVEYKFVI   61 (92)
T ss_pred             EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccC---CCCEEEEEEeCCCCcEEEEEEE
Confidence            578888876   488999999885   89987788764   3569999999987 69999999

This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>PRK12313 glycogen branching enzyme; Provisional

Probab=97.24  E-value=0.00098  Score=68.36  Aligned_cols=67  Identities=21%  Similarity=0.282  Sum_probs=48.9

Q ss_pred             EEEEEe-cCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCc-eEEEEEEE-cCee--ecCCCCCeee
Q 024154           22 PVRFIW-PNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPG-HHQYKFYV-DGEW--RHDENQPHVS   90 (271)
Q Consensus        22 pVtF~w-~~~ak~V~V~GsF~nW~~~-ipM~k~~~~~g~f~~~~~-LppG-~yeYKFiV-DG~W--~~Dp~~P~v~   90 (271)
                      .|+|+. ...|++|+|+|+|++|... .+|.+..  .|+|.+++. +.+| .|.|++.. +|.|  +.||....+.
T Consensus        39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~--~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~~~~  112 (633)
T PRK12313         39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRE--SGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAFYFE  112 (633)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCcccccccccC--CCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceEEEe
Confidence            577865 5579999999999999864 6898864  799999987 4444 57776654 5665  4666655444

>cd02852 Isoamylase_N_term Isoamylase N-terminus domain

Probab=97.21  E-value=0.0013  Score=53.10  Aligned_cols=59  Identities=25%  Similarity=0.518  Sum_probs=43.3

Q ss_pred             EEE-EecCCCceEEEEeccCCCC---C--CCCCCCCC-CCCCeEEEEEe-cCCceEEEEEEEcCeeecC
Q 024154           23 VRF-IWPNGGRRVSLSGSFTRWS---E--PMPMSPSE-GCPAVFQIICR-LPPGHHQYKFYVDGEWRHD   83 (271)
Q Consensus        23 VtF-~w~~~ak~V~V~GsF~nW~---~--~ipM~k~~-~~~g~f~~~~~-LppG~yeYKFiVDG~W~~D   83 (271)
                      ++| .|...|++|.|+. |++|.   +  .++|.+.+ +..|+|++.+. +.+|. .|+|.|+|.|..+
T Consensus         9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p~   75 (119)
T cd02852           9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEPE   75 (119)
T ss_pred             EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCCCC
Confidence            667 5677899999999 88875   2  35776543 23589999986 67775 7999999865433

Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.17  E-value=0.0017  Score=50.52  Aligned_cols=54  Identities=22%  Similarity=0.448  Sum_probs=43.4

Q ss_pred             eEEEEEecC----CCceEEEEeccC---CCCCCCCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 024154           21 VPVRFIWPN----GGRRVSLSGSFT---RWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (271)
Q Consensus        21 vpVtF~w~~----~ak~V~V~GsF~---nW~~~ipM~k~~~~~g~f~~~~~LppG-~yeYKFiV   76 (271)
                      ++|+|+..+    +++.++|+|+-.   +|+...+|...+  ...|+.++.||++ ..+|||++
T Consensus         1 v~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~~--~~~W~~~v~lp~~~~ieYky~~   62 (95)
T cd05813           1 VNVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYVK--DGFWSASVSLPVDTHVEWKFVL   62 (95)
T ss_pred             CeEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCCC--CCCEEEEEEecCCCcEEEEEEE
Confidence            467888864    457788999875   788878997654  5789999999997 49999998

Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>PRK14706 glycogen branching enzyme; Provisional

Probab=97.16  E-value=0.0012  Score=68.05  Aligned_cols=66  Identities=30%  Similarity=0.585  Sum_probs=48.9

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEec-CCceEEEEEEEcC---ee--ecCCCCCeee
Q 024154           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL-PPGHHQYKFYVDG---EW--RHDENQPHVS   90 (271)
Q Consensus        22 pVtF~-w~~~ak~V~V~GsF~nW~~~-ipM~k~~~~~g~f~~~~~L-ppG~yeYKFiVDG---~W--~~Dp~~P~v~   90 (271)
                      -++|+ |...|++|.|+|+||+|... .||.+.+  .|+|++.++. .+| ..|||.|++   .+  +.||....+.
T Consensus        39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~--~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~~~~  112 (639)
T PRK14706         39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLD--FGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGSFFE  112 (639)
T ss_pred             cEEEEEECCCCCEEEEEEecCCcccccccccccC--CCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceEEEe
Confidence            46675 56689999999999999864 6998865  6999999874 445 468888854   33  6777665544

>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.10  E-value=0.0043  Score=48.81  Aligned_cols=57  Identities=23%  Similarity=0.410  Sum_probs=42.8

Q ss_pred             ceEEEEEecC----CCceEEEEe---ccCCCCCCC-CCCCCC-CCCCeEEEEEecCCc-eEEEEEEE
Q 024154           20 LVPVRFIWPN----GGRRVSLSG---SFTRWSEPM-PMSPSE-GCPAVFQIICRLPPG-HHQYKFYV   76 (271)
Q Consensus        20 ~vpVtF~w~~----~ak~V~V~G---sF~nW~~~i-pM~k~~-~~~g~f~~~~~LppG-~yeYKFiV   76 (271)
                      .++|+|....    .+++|+|+|   ++-+|+... +|.... ...+.|++++.||+| .++|||++
T Consensus         2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~   68 (99)
T cd05809           2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK   68 (99)
T ss_pred             ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence            4899999853    478999999   566998642 343321 124789999999998 59999999

Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1

>PRK14705 glycogen branching enzyme; Provisional

Probab=97.05  E-value=0.0011  Score=72.52  Aligned_cols=64  Identities=25%  Similarity=0.557  Sum_probs=47.5

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc---Cee--ecCCCCC
Q 024154           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD---GEW--RHDENQP   87 (271)
Q Consensus        22 pVtF~-w~~~ak~V~V~GsF~nW~~~-ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVD---G~W--~~Dp~~P   87 (271)
                      -|+|+ |..+|++|+|+|+||+|... .+|.+.. ..|+|++.++ +.+|. .|||.|+   |.|  +.||...
T Consensus       639 Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~-~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPyA~  710 (1224)
T PRK14705        639 GVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLG-SSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPLAF  710 (1224)
T ss_pred             eEEEEEECCCCCEEEEEEEecCCCCCcccceECC-CCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCcccc
Confidence            45665 56789999999999999864 5898743 3699999886 77885 6888884   444  4566543

>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.05  E-value=0.0046  Score=49.06  Aligned_cols=55  Identities=27%  Similarity=0.510  Sum_probs=43.7

Q ss_pred             ceEEEEEecC-----CCceEEEEeccC---CCCCCC-----CCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 024154           20 LVPVRFIWPN-----GGRRVSLSGSFT---RWSEPM-----PMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (271)
Q Consensus        20 ~vpVtF~w~~-----~ak~V~V~GsF~---nW~~~i-----pM~k~~~~~g~f~~~~~LppG-~yeYKFiV   76 (271)
                      .+||+|+...     -+++++|+|+-.   +|+...     +|....  ...|++++.||+| ..+|||++
T Consensus         2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~--~~~W~~~~~lp~~~~veyK~v~   70 (103)
T cd05820           2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPN--WPDWFVVASVPAGTYIEFKFLK   70 (103)
T ss_pred             cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCC--CCCEEEEEEcCCCCcEEEEEEE
Confidence            3899999973     378999999876   898632     665432  5689999999998 69999999

Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco

>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.01  E-value=0.0024  Score=51.97  Aligned_cols=57  Identities=25%  Similarity=0.501  Sum_probs=44.6

Q ss_pred             EEEEEecC----CCceEEEEec---cCCCCC--CCCCCCCCCCCCeEEEEEecCCc-eEEEEEEEcC
Q 024154           22 PVRFIWPN----GGRRVSLSGS---FTRWSE--PMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDG   78 (271)
Q Consensus        22 pVtF~w~~----~ak~V~V~Gs---F~nW~~--~ipM~k~~~~~g~f~~~~~LppG-~yeYKFiVDG   78 (271)
                      .|+|...+    .++.|+|+|+   +.+|++  ..+|.+.......|++++.||++ .++|||++..
T Consensus         2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~~   68 (120)
T cd05814           2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVAV   68 (120)
T ss_pred             eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEEE
Confidence            46777765    4789999999   789985  35888752125789999999987 7999999943

Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>PRK05402 glycogen branching enzyme; Provisional

Probab=96.89  E-value=0.0023  Score=66.75  Aligned_cols=68  Identities=26%  Similarity=0.421  Sum_probs=48.3

Q ss_pred             EEEEEec-CCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCc-eEEEEEEEc-Cee--ecCCCCCeee
Q 024154           22 PVRFIWP-NGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPG-HHQYKFYVD-GEW--RHDENQPHVS   90 (271)
Q Consensus        22 pVtF~w~-~~ak~V~V~GsF~nW~~~-ipM~k~~~~~g~f~~~~~-LppG-~yeYKFiVD-G~W--~~Dp~~P~v~   90 (271)
                      .|+|+.- ..|++|.|+|+||+|... .+|.+.. ..|+|++.+. +++| .|.|++..+ |.|  +.||..-.+.
T Consensus       132 gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~-~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa~~~~  206 (726)
T PRK05402        132 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRG-ESGVWELFIPGLGEGELYKFEILTADGELLLKADPYAFAAE  206 (726)
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCCCccccceEcC-CCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCceEEEe
Confidence            4777765 579999999999999763 6898862 2799999886 6666 677777664 444  4555544433

>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase

Probab=96.87  E-value=0.0025  Score=64.39  Aligned_cols=72  Identities=19%  Similarity=0.243  Sum_probs=53.4

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcC-eeecCCCCCeeeCCCCccccE
Q 024154           23 VRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDG-EWRHDENQPHVSGNYGVVNCV   99 (271)
Q Consensus        23 VtF~-w~~~ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVDG-~W~~Dp~~P~v~d~~G~~NNv   99 (271)
                      |+|+ |...|++|.|++.   + ...+|.+.+  .|+|++++. +.+| +.|+|.||| ..+.||.......+. +..++
T Consensus         1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~~--~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~~~~-~~~S~   72 (542)
T TIGR02402         1 VRFRLWAPTAASVKLRLN---G-ALHAMQRLG--DGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQPDGV-HGPSQ   72 (542)
T ss_pred             CEEEEECCCCCEEEEEeC---C-CEEeCeECC--CCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccccCC-CCCeE
Confidence            4664 6778999999973   3 347999875  699999997 7778 789999999 788999988765321 22355


Q ss_pred             EEe
Q 024154          100 YIA  102 (271)
Q Consensus       100 l~V  102 (271)
                      +..
T Consensus        73 V~d   75 (542)
T TIGR02402        73 VVD   75 (542)
T ss_pred             Eec
Confidence            544

Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.

>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain

Probab=96.74  E-value=0.0048  Score=46.92  Aligned_cols=62  Identities=23%  Similarity=0.359  Sum_probs=45.2

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEc-CeeecCCCCCeee
Q 024154           23 VRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD-GEWRHDENQPHVS   90 (271)
Q Consensus        23 VtF~-w~~~ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~LppG~yeYKFiVD-G~W~~Dp~~P~v~   90 (271)
                      ++|+ |...|++|.|+...  |. ..+|.+.+  .|+|++++..-+|. .|+|.|+ +..+.||......
T Consensus        10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~~--~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~~~   73 (85)
T cd02853          10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRDG--DGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRFQP   73 (85)
T ss_pred             EEEEEeCCCCCEEEEEecC--CC-cccCccCC--CcEEEEEeCCCCCC-eEEEEECCCcCCCCCccccCC
Confidence            6676 56689999999743  53 47898765  79999998633665 4777776 5778888877644

MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.72  E-value=0.0084  Score=47.33  Aligned_cols=58  Identities=26%  Similarity=0.504  Sum_probs=44.4

Q ss_pred             cceEEEEEecC---CCceEEEEeccC---CCCC--CCCCCCCC--CCCCeEEEEEecCCc-eEEEEEEE
Q 024154           19 ILVPVRFIWPN---GGRRVSLSGSFT---RWSE--PMPMSPSE--GCPAVFQIICRLPPG-HHQYKFYV   76 (271)
Q Consensus        19 ~~vpVtF~w~~---~ak~V~V~GsF~---nW~~--~ipM~k~~--~~~g~f~~~~~LppG-~yeYKFiV   76 (271)
                      ..++|+|...+   .++.|+|+|+-.   +|++  .++|....  .....|+.++.||++ .++|||++
T Consensus         5 ~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~   73 (106)
T cd05811           5 TTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR   73 (106)
T ss_pred             CEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence            45788998865   478999999875   7986  36786431  124689999999987 59999997

Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also

>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase)

Probab=96.60  E-value=0.011  Score=45.41  Aligned_cols=53  Identities=26%  Similarity=0.459  Sum_probs=41.2

Q ss_pred             EEEEecC---CCceEEEEeccC---CCCC--CCCCCCCCCCCCeEEEEEecCC--c-eEEEEEEE
Q 024154           23 VRFIWPN---GGRRVSLSGSFT---RWSE--PMPMSPSEGCPAVFQIICRLPP--G-HHQYKFYV   76 (271)
Q Consensus        23 VtF~w~~---~ak~V~V~GsF~---nW~~--~ipM~k~~~~~g~f~~~~~Lpp--G-~yeYKFiV   76 (271)
                      |+|+..+   .++.++|+|+..   +|++  .++|...+ ..+.|++.+.+|+  + .++|||++
T Consensus         2 v~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~-~~~~W~~~v~~~~~~~~~~~yKy~~   65 (96)
T cd05467           2 VRFQVRCTTQFGQSVYVVGSHPELGNWDPAKALRLNTSN-SYPLWTGEIPLPAPEGQVIEYKYVI   65 (96)
T ss_pred             EEEEEEEECCCCCEEEEEeCcHHhCCcChhcCccccCCC-CCCcEEEEEEecCCCCCeEEEEEEE
Confidence            4566653   588999999986   7985  36887653 2478999999998  6 69999998

CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.57  E-value=0.01  Score=46.72  Aligned_cols=52  Identities=25%  Similarity=0.438  Sum_probs=40.0

Q ss_pred             EEEEecC---CCceEEEEecc---CCCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 024154           23 VRFIWPN---GGRRVSLSGSF---TRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (271)
Q Consensus        23 VtF~w~~---~ak~V~V~GsF---~nW~~~--ipM~k~~~~~g~f~~~~~LppG-~yeYKFiV   76 (271)
                      |+|...+   .|+.+.|+|+-   -+|++.  ++|...+  ...|++++.||++ .++|||+|
T Consensus         2 v~F~i~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~--~~~W~~~v~lp~~~~veYKY~i   62 (100)
T cd05817           2 VTFKIHYPTQFGEAVYISGNCNQLGNWNPSKAKRMQWNE--GDLWTVDVGIPESVYIEYKYFV   62 (100)
T ss_pred             EEEEEEEEcCCCCEEEEEeCcHHHCCCCccccCcccCCC--CCCEEEEEEECCCCcEEEEEEE
Confidence            3454443   57899999995   489864  5787654  5689999999987 69999998

This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2

Probab=96.56  E-value=0.01  Score=46.58  Aligned_cols=52  Identities=19%  Similarity=0.397  Sum_probs=41.4

Q ss_pred             EEEEecC----CCceEEEEeccC---CCCC--CCCCCCCCCCCCeEEEEEecCCc--eEEEEEEE
Q 024154           23 VRFIWPN----GGRRVSLSGSFT---RWSE--PMPMSPSEGCPAVFQIICRLPPG--HHQYKFYV   76 (271)
Q Consensus        23 VtF~w~~----~ak~V~V~GsF~---nW~~--~ipM~k~~~~~g~f~~~~~LppG--~yeYKFiV   76 (271)
                      |+|+...    .++.|+|+|+-.   +|++  .++|...+  ...|++.+.+|++  .++|||++
T Consensus         2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~--~~~W~~~v~~p~~~~~ieYKyvi   64 (99)
T cd05816           2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVG--FPIWEADIDISKDSFPFEYKYII   64 (99)
T ss_pred             EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCC--CCcEEEEEEeCCCCccEEEEEEE
Confidence            6777754    478999999864   8986  36888754  5689999999885  59999998

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=96.51  E-value=0.0046  Score=57.34  Aligned_cols=52  Identities=23%  Similarity=0.408  Sum_probs=49.2

Q ss_pred             CCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       164 s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      |.+++.++.+.+++.|-..|+++|++-||+-|-.  .++|+||.+|+.+.+...
T Consensus       179 s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d--k~vGiit~~dI~~aia~g  230 (294)
T COG2524         179 SKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD--KIVGIITLSDIAKAIANG  230 (294)
T ss_pred             cCCceEecCCccHHHHHHHHHHcCccCCceecCC--ceEEEEEHHHHHHHHHcC
Confidence            4789999999999999999999999999999988  999999999999998875

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=96.48  E-value=0.0088  Score=37.74  Aligned_cols=47  Identities=30%  Similarity=0.574  Sum_probs=41.4

Q ss_pred             eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      .++++-+.+++.+...+.++++..+|+.+.. ++++|+++..|++..|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHhh
Confidence            3567788889999999999999999999976 7899999999998765

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>PRK05402 glycogen branching enzyme; Provisional

Probab=96.47  E-value=0.0042  Score=64.83  Aligned_cols=61  Identities=11%  Similarity=0.041  Sum_probs=43.9

Q ss_pred             EEE-EecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEE--cCe--eecCCCC
Q 024154           23 VRF-IWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYV--DGE--WRHDENQ   86 (271)
Q Consensus        23 VtF-~w~~~ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~LppG~yeYKFiV--DG~--W~~Dp~~   86 (271)
                      ++| +|..+|++|+|+|+||+ ....||.+.+ ..|+|++.+++..|.. |||.|  ||+  .+.||..
T Consensus        30 ~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~~-~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPya   95 (726)
T PRK05402         30 LVVRALLPGAEEVWVILPGGG-RKLAELERLH-PRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYR   95 (726)
T ss_pred             EEEEEECCCCeEEEEEeecCC-CccccceEcC-CCceEEEEecCCCCCC-eEEEEEeCCceeEeccccc
Confidence            444 56789999999999997 3457999754 3799999998666632 55555  784  4566654

>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.31  E-value=0.032  Score=43.84  Aligned_cols=57  Identities=23%  Similarity=0.314  Sum_probs=42.3

Q ss_pred             ceEEEEEec-C---CCceEEEEeccC---CCCCC--CCCC-CC-CCCCCeEEEEEecCCc-eEEEEEEE
Q 024154           20 LVPVRFIWP-N---GGRRVSLSGSFT---RWSEP--MPMS-PS-EGCPAVFQIICRLPPG-HHQYKFYV   76 (271)
Q Consensus        20 ~vpVtF~w~-~---~ak~V~V~GsF~---nW~~~--ipM~-k~-~~~~g~f~~~~~LppG-~yeYKFiV   76 (271)
                      .++|+|... .   .+++|+|+|+-.   +|++.  +.|. .. ......|++++.||+| .++|||++
T Consensus         2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~   70 (101)
T cd05807           2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK   70 (101)
T ss_pred             cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence            478999985 2   478999999876   89864  3232 11 1135689999999998 69999999

CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

Probab=96.14  E-value=0.018  Score=59.16  Aligned_cols=67  Identities=24%  Similarity=0.525  Sum_probs=48.7

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc---Ce--eecCCCCCeee
Q 024154           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD---GE--WRHDENQPHVS   90 (271)
Q Consensus        22 pVtF~-w~~~ak~V~V~GsF~nW~~~-ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVD---G~--W~~Dp~~P~v~   90 (271)
                      .++|+ |...|++|.|+|+||+|... .+|.+.+ ..|+|++.+. +.+|. .|+|.|+   |.  .+.||....+.
T Consensus        29 g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~-~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~~~~  103 (613)
T TIGR01515        29 GTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRN-DNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAFYAE  103 (613)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCCceecceEec-CCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEeeec
Confidence            45665 56689999999999999764 5888753 2689999886 45564 5888874   54  47888766544

A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.

>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.12  E-value=0.028  Score=44.15  Aligned_cols=54  Identities=22%  Similarity=0.405  Sum_probs=41.7

Q ss_pred             eEEEEEec-C---CCceEEEEeccC---CCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 024154           21 VPVRFIWP-N---GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (271)
Q Consensus        21 vpVtF~w~-~---~ak~V~V~GsF~---nW~~~--ipM~k~~~~~g~f~~~~~LppG-~yeYKFiV   76 (271)
                      ++|+|.-. .   .++.|+|+|+-.   +|++.  ++|....  ...|++.+.||.+ ..+|||++
T Consensus         1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~--~~~W~~~v~lp~~~~veyKyv~   64 (97)
T cd05810           1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPTA--YPTWSGSISLPASTNVEWKCLK   64 (97)
T ss_pred             CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCCC--CCeEEEEEEcCCCCeEEEEEEE
Confidence            46777743 2   478999999886   89863  5776543  5689999999997 69999988

Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase

Probab=95.91  E-value=0.055  Score=44.52  Aligned_cols=83  Identities=22%  Similarity=0.340  Sum_probs=55.4

Q ss_pred             eEEEEEec----CCCceEEEEeccCCCCC-----CCCCCCCCCCCCeEEEEEecCCc-eEEEEEEEcCe-----------
Q 024154           21 VPVRFIWP----NGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDGE-----------   79 (271)
Q Consensus        21 vpVtF~w~----~~ak~V~V~GsF~nW~~-----~ipM~k~~~~~g~f~~~~~LppG-~yeYKFiVDG~-----------   79 (271)
                      +.|||.|.    .....+.|.++.|+...     ...|++..+ +.+|+.++.||.+ +-.|+|+.+-.           
T Consensus         2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~g-TDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r   80 (122)
T PF11806_consen    2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPG-TDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWR   80 (122)
T ss_dssp             -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TT-SSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHH
T ss_pred             cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCCC-CceEEEEEEECcccEEEEEEEecCcccchhHHHHHH
Confidence            46999999    34578999999999854     247888764 6899999999997 78899997543           


Q ss_pred             -----eecCCCCCeee-CC---CCccccEEEecC
Q 024154           80 -----WRHDENQPHVS-GN---YGVVNCVYIAVP  104 (271)
Q Consensus        80 -----W~~Dp~~P~v~-d~---~G~~NNvl~V~~  104 (271)
                           -+.||-||... ..   .|+..++++.+.
T Consensus        81 ~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~Lp~  114 (122)
T PF11806_consen   81 AILAQAQADPLNPRPWPNGAQDRGNAASVLELPD  114 (122)
T ss_dssp             HHGGG-B--TTSSSEEE-TT---SSEEEEEE-TT
T ss_pred             HHHhccCCCCCCCCCCCCCccccccccCceeCCC
Confidence                 46789998754 33   488999999843

The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.73  E-value=0.021  Score=46.47  Aligned_cols=49  Identities=22%  Similarity=0.418  Sum_probs=44.2

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      ++++++.+.++..|+..|.++++.++|+.|.  ++++|++|..|++..+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~   50 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVT   50 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHh
Confidence            4678899999999999999999999999997  899999999999887753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.67  E-value=0.02  Score=43.33  Aligned_cols=45  Identities=24%  Similarity=0.451  Sum_probs=41.2

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      +++.++.+.++.+|+..|.+++...+|+.|.  ++++|++|..|++.
T Consensus        68 ~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  112 (113)
T cd04623          68 NVITVTPDDTVDEAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK  112 (113)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence            6788888999999999999999999999987  88999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.64  E-value=0.031  Score=43.44  Aligned_cols=49  Identities=20%  Similarity=0.436  Sum_probs=44.2

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      .++.++-+.++.+|+..|.++++...|+-|. .++++|++|..|++.++.
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~   50 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAK   50 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHh
Confidence            4678899999999999999999999999987 688999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=95.56  E-value=0.015  Score=44.71  Aligned_cols=56  Identities=21%  Similarity=0.454  Sum_probs=45.9

Q ss_pred             cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ++.+++....++.+++-+.++..|+..|.++++..+|+.|. .+.++||||..|+++
T Consensus        58 ~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~~  113 (114)
T cd04801          58 TVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVED-SGQVIGLITEADLLR  113 (114)
T ss_pred             chhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcC-CCcEEEEEeccceec
Confidence            35555544445678888999999999999999999999987 468999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.49  E-value=0.03  Score=43.73  Aligned_cols=51  Identities=22%  Similarity=0.312  Sum_probs=44.8

Q ss_pred             eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      +++++.+.++.+|...|.++++..+|+-|..+++++|++|..|+++.+...
T Consensus         3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~   53 (123)
T cd04627           3 FIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWEN   53 (123)
T ss_pred             ceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHh
Confidence            567788899999999999999999999998778999999999999876543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.47  E-value=0.023  Score=44.66  Aligned_cols=47  Identities=19%  Similarity=0.234  Sum_probs=42.8

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ..++.++.+.++.+|+..|.++++..+|+.|.. ++++|++|.+|++.
T Consensus        79 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~  125 (126)
T cd04642          79 RPLITCTPSSTLKEVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS  125 (126)
T ss_pred             CCCeEECCCCcHHHHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence            458889999999999999999999999999975 78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=95.34  E-value=0.042  Score=44.94  Aligned_cols=50  Identities=18%  Similarity=0.204  Sum_probs=44.6

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      +++++..+.++++|...|.++++..+|+-|.+ ++++|+||..|++..+..
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~   51 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFT   51 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhh
Confidence            56788999999999999999999999999975 789999999999987653

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.29  E-value=0.058  Score=39.86  Aligned_cols=52  Identities=31%  Similarity=0.551  Sum_probs=45.8

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhc
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG  218 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~  218 (271)
                      ++++++.+.++..|+..|..++...+|++|.. ++++|+++..|++..+...+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~   53 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGG   53 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhcc
Confidence            56788999999999999999999999999976 89999999999998775543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.27  E-value=0.026  Score=43.26  Aligned_cols=46  Identities=13%  Similarity=0.197  Sum_probs=42.4

Q ss_pred             eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ++.+.-+-++..|+..|.++++...|+=|...++++|++|..|.+.
T Consensus        52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            6788899999999999999999999999877789999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1

Probab=95.22  E-value=0.055  Score=42.39  Aligned_cols=54  Identities=30%  Similarity=0.618  Sum_probs=40.0

Q ss_pred             EEEEecC---CCceEEEEeccC---CCCCC--CCCCCC-CCCCCeEEEEEecCCc-eEEEEEEE
Q 024154           23 VRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPS-EGCPAVFQIICRLPPG-HHQYKFYV   76 (271)
Q Consensus        23 VtF~w~~---~ak~V~V~GsF~---nW~~~--ipM~k~-~~~~g~f~~~~~LppG-~yeYKFiV   76 (271)
                      ++|...+   -|+++.|+|+-.   +|...  .+|... .+....|++++.+|++ ..+|||+|
T Consensus         2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v   65 (101)
T cd05815           2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV   65 (101)
T ss_pred             EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence            5666654   479999999875   78653  578642 2223489999999887 59999999

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.14  E-value=0.023  Score=44.16  Aligned_cols=59  Identities=14%  Similarity=0.159  Sum_probs=48.5

Q ss_pred             hccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCC--CCceeeeechHHHHH
Q 024154          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFIL  212 (271)
Q Consensus       154 ~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~--~~~f~G~lt~tD~i~  212 (271)
                      ..++-+++....++++++.+-++..|+..|.++++...|+=|..  .++++|++|.+|++.
T Consensus        57 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          57 KVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             CCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            34455555444568899999999999999999999999998876  378999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=95.10  E-value=0.26  Score=40.17  Aligned_cols=55  Identities=24%  Similarity=0.368  Sum_probs=40.3

Q ss_pred             EEEEEec----CCCceEEEEeccC---CCCCC--CCCCCCC-----CCCCeEEEEEecCCc----eEEEEEEE
Q 024154           22 PVRFIWP----NGGRRVSLSGSFT---RWSEP--MPMSPSE-----GCPAVFQIICRLPPG----HHQYKFYV   76 (271)
Q Consensus        22 pVtF~w~----~~ak~V~V~GsF~---nW~~~--ipM~k~~-----~~~g~f~~~~~LppG----~yeYKFiV   76 (271)
                      .|+|...    ..+++|+|+|+-.   +|+..  ++|....     .....|++++.|+++    ..+|||+.
T Consensus         2 ~~~f~~~~~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~   74 (112)
T cd05806           2 LFRFGVVLTFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK   74 (112)
T ss_pred             EEEEEEEEeecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence            4666663    3678999999864   79864  5676541     123469999999985    69999998

Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=95.08  E-value=0.038  Score=43.99  Aligned_cols=54  Identities=20%  Similarity=0.412  Sum_probs=46.1

Q ss_pred             ccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       155 ~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      .++.+++  ..+.+.++.+.++.+|+..|.+++....|+.|  .+.++|++|..|+++
T Consensus        81 ~~v~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~  134 (135)
T cd04586          81 RKVADVM--TRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLR  134 (135)
T ss_pred             CCHHHHh--CCCceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhc
Confidence            4455655  23678899999999999999999999999999  589999999999874

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=95.06  E-value=0.069  Score=40.43  Aligned_cols=50  Identities=22%  Similarity=0.458  Sum_probs=44.1

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      .+++.+..+.++.+|+..+.++++...|+-|.. ++++|++|..|+++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~   51 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVA   51 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHh
Confidence            467888999999999999999999889988865 89999999999987654

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.01  E-value=0.055  Score=41.70  Aligned_cols=48  Identities=21%  Similarity=0.432  Sum_probs=43.3

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      ++++++.+.++++|...|.++++...|+.|.  ++++|++|..|++..+.
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~   49 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALR   49 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhh
Confidence            4678899999999999999999999999996  89999999999987655

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.99  E-value=0.043  Score=41.64  Aligned_cols=45  Identities=13%  Similarity=0.312  Sum_probs=41.3

Q ss_pred             eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      +..++.+-++.+|+..|.++++...|+.|.. ++++|++|..|+++
T Consensus        51 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~-~~~~Giit~~di~~   95 (96)
T cd04614          51 VVTATKRTTVSECAQKMKRNRIEQIPIINGN-DKLIGLLRDHDLLK   95 (96)
T ss_pred             cEEecCCCCHHHHHHHHHHhCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            7788999999999999999999999999975 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=94.99  E-value=0.032  Score=42.96  Aligned_cols=55  Identities=20%  Similarity=0.320  Sum_probs=45.5

Q ss_pred             cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHH
Q 024154          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI  213 (271)
Q Consensus       156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~i  213 (271)
                      ++.+++.  ..+..+..+-+++.|+..|.++++...|+=|.. ++++|++|..|++++
T Consensus        57 ~v~~~~~--~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~~  111 (111)
T cd04603          57 KVCEVYI--VPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLRF  111 (111)
T ss_pred             Chhheee--cCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhcC
Confidence            3555553  346778889999999999999999999998866 689999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=94.97  E-value=0.064  Score=41.54  Aligned_cols=51  Identities=22%  Similarity=0.399  Sum_probs=44.8

Q ss_pred             CCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       164 s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      |.++++++.+.++.+|+..|.++++..+|+-|.. ++++|++|..|+++.+.
T Consensus         1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~   51 (124)
T cd04600           1 SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHAR   51 (124)
T ss_pred             CCCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhc
Confidence            4578889999999999999999999999998865 88999999999987553

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=94.94  E-value=0.061  Score=40.68  Aligned_cols=48  Identities=27%  Similarity=0.376  Sum_probs=42.9

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      .++++..+.++.+|...|.++++..+|+.|.. +.|+|++|..|+...+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~   49 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREIL   49 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHH
Confidence            46788999999999999999999999999986 7899999999998754

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.94  E-value=0.12  Score=38.90  Aligned_cols=51  Identities=25%  Similarity=0.348  Sum_probs=44.7

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      ++++++.+.++.+|+..+.++++...|+-|.. ++++|++|..|++..+...
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~   52 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALR   52 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhc
Confidence            56778899999999999999999999999975 6899999999999866543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.84  E-value=0.043  Score=42.34  Aligned_cols=54  Identities=20%  Similarity=0.466  Sum_probs=44.9

Q ss_pred             ccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       155 ~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      .++.+++..  ..+.++.+.++.+|+..|.+++...+|+.|.  ++++|++|..|+++
T Consensus        67 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~  120 (121)
T cd04633          67 LPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR  120 (121)
T ss_pred             cCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence            344454432  5778899999999999999999999999986  78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=94.82  E-value=0.037  Score=42.01  Aligned_cols=53  Identities=32%  Similarity=0.560  Sum_probs=45.1

Q ss_pred             cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ++.+++.  .+.+.++-+.++.+|+..|.++++..+|+=|.  +.++|++|..|+++
T Consensus        58 ~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~  110 (111)
T cd04800          58 PVSEVMT--APPITIPPDATVFEALLLMLERGIHHLPVVDD--GRLVGVISATDLLR  110 (111)
T ss_pred             CHHHHhC--CCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence            3555553  36888999999999999999999999999876  88999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=94.80  E-value=0.063  Score=41.03  Aligned_cols=48  Identities=19%  Similarity=0.407  Sum_probs=43.3

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      ++++++.+.++.+|+..|.++++...|+.|.  ++|+|+++..|+...+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~   49 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASP   49 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhh
Confidence            5678999999999999999999999999998  89999999999987553

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=94.79  E-value=0.079  Score=40.10  Aligned_cols=48  Identities=21%  Similarity=0.425  Sum_probs=42.7

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      ++++++.+.++.+|+..|.++++..+|+-|.  ++++|+++..|+++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~   49 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIA   49 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHh
Confidence            4678889999999999999999999999887  78999999999987654

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.75  E-value=0.084  Score=41.39  Aligned_cols=49  Identities=27%  Similarity=0.491  Sum_probs=43.6

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      +++++..+.++.+|+..|.++++..+|+-|.. ++++|++|..|++..+.
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~   50 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVV   50 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHh
Confidence            46778899999999999999999999999877 78999999999998654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=94.72  E-value=0.084  Score=39.64  Aligned_cols=49  Identities=33%  Similarity=0.509  Sum_probs=43.5

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      +.+++++.+.++++|...+.++++..+|+-|.  ++++|++|..|+.+.+.
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~   49 (110)
T cd04609           1 GDVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALI   49 (110)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHh
Confidence            35678899999999999999999999999886  89999999999998764

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>TIGR02104 pulA_typeI pullulanase, type I

Probab=94.67  E-value=0.091  Score=53.81  Aligned_cols=66  Identities=18%  Similarity=0.271  Sum_probs=46.4

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCC-----CCCCCCCCCCCCeEEEEEe-cCCc-eEEEEEEEcCe--eecCCCCCeee
Q 024154           22 PVRFI-WPNGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICR-LPPG-HHQYKFYVDGE--WRHDENQPHVS   90 (271)
Q Consensus        22 pVtF~-w~~~ak~V~V~GsF~nW~~-----~ipM~k~~~~~g~f~~~~~-LppG-~yeYKFiVDG~--W~~Dp~~P~v~   90 (271)
                      -++|+ |...|++|.|++ |++|..     .++|.+..  .|+|++.++ +.+| .|.|+...+|.  ++.||....+.
T Consensus        20 ~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~--~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DPya~~~~   95 (605)
T TIGR02104        20 KTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGE--NGVWSAVLEGDLHGYFYTYQVCINGKWRETVDPYAKAVT   95 (605)
T ss_pred             eeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCC--CCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCCCcceec
Confidence            36775 566899999998 888853     35888754  699999987 4555 44444444564  58898876544

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.

>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=94.63  E-value=0.053  Score=41.94  Aligned_cols=61  Identities=23%  Similarity=0.480  Sum_probs=37.8

Q ss_pred             EEEEEecC------CCceEEEEeccCCCCCC--CCCCCCC--CCCCeEEEEEecCCceEEEEEEE-cC--eeec
Q 024154           22 PVRFIWPN------GGRRVSLSGSFTRWSEP--MPMSPSE--GCPAVFQIICRLPPGHHQYKFYV-DG--EWRH   82 (271)
Q Consensus        22 pVtF~w~~------~ak~V~V~GsF~nW~~~--ipM~k~~--~~~g~f~~~~~LppG~yeYKFiV-DG--~W~~   82 (271)
                      +|++.|..      ++.+|++.+.|++|+..  ++|.+..  ...+.|++++.+|..-|+..|+. ||  .|-.
T Consensus         3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~wDN   76 (87)
T PF03423_consen    3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDGAGNWDN   76 (87)
T ss_dssp             EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-SSS-EES
T ss_pred             EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCCCCcEeC
Confidence            57777743      46899999999999864  4576542  12589999999999988888888 65  4533

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.62  E-value=0.068  Score=40.53  Aligned_cols=48  Identities=19%  Similarity=0.322  Sum_probs=42.5

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      .+++++.+.++.+|+..|.++++..+|+-|.. ++++|++|..|+.+.+
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKS   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCC
Confidence            46788999999999999999999999999854 8999999999998744

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PLN02316 synthase/transferase

Probab=94.57  E-value=0.12  Score=56.18  Aligned_cols=76  Identities=13%  Similarity=0.167  Sum_probs=56.0

Q ss_pred             CCCCCCCCCCCCCCCCCcceEEEEEecC------CCceEEEEeccCCCCCC---CCCCCCCCCCCeEEEEEecCCceEEE
Q 024154            2 YNSGLNTGHENSGVVGSILVPVRFIWPN------GGRRVSLSGSFTRWSEP---MPMSPSEGCPAVFQIICRLPPGHHQY   72 (271)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~vpVtF~w~~------~ak~V~V~GsF~nW~~~---ipM~k~~~~~g~f~~~~~LppG~yeY   72 (271)
                      |..|+-++-.|......  .++++.|+.      +..+|.|.|.||+|...   .+|.|.+..+++|+..+.+|++-|..
T Consensus       137 ~~~~~~~f~~P~~~~a~--~~~~v~~n~~~~~L~~~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~l  214 (1036)
T PLN02316        137 FSRGNKLFVYPQVVKPD--SDIEVYLNRSLSTLANEPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKM  214 (1036)
T ss_pred             cCCCCeEEeccccccCC--CeeEEEEcCCCCccCCCCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEE
Confidence            34555566666665544  455666653      35789999999999764   37777664467899999999999999


Q ss_pred             EEEE-cCe
Q 024154           73 KFYV-DGE   79 (271)
Q Consensus        73 KFiV-DG~   79 (271)
                      -|+. ||.
T Consensus       215 dfVf~~g~  222 (1036)
T PLN02316        215 DFVFFNGQ  222 (1036)
T ss_pred             EEEEeCCc
Confidence            9998 773

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=94.55  E-value=0.12  Score=39.20  Aligned_cols=50  Identities=22%  Similarity=0.436  Sum_probs=44.8

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      .++++..+.++.+|...|.++++...|+-|..+++++|++|..|.+..+.
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~   51 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALA   51 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHH
Confidence            57888999999999999999999999998887789999999999998664

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=94.52  E-value=0.1  Score=39.61  Aligned_cols=48  Identities=25%  Similarity=0.414  Sum_probs=43.5

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      .++++++.+.++++|...|.+++...+|+-|.  ++++|+++..|.+..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~   49 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKAL   49 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHH
Confidence            46789999999999999999999989999997  8999999999988765

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.51  E-value=0.1  Score=39.73  Aligned_cols=48  Identities=27%  Similarity=0.543  Sum_probs=43.0

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      +++.+..+.++.+|+..+.++++..+|+-|. .++++|+++..|+++.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~   49 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK-EGKYVGTISLTDILWKL   49 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECC-CCcEEEEEeHHHHHHHh
Confidence            6788999999999999999999999999985 57899999999998755

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.49  E-value=0.18  Score=38.67  Aligned_cols=51  Identities=16%  Similarity=0.244  Sum_probs=44.5

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      +++++..+.++.+|+..|.+++...+|+-|...++++|++|..|+++.+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~   52 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVA   52 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHh
Confidence            467888899999999999999999999998766899999999999886543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10439 enterobactin/ferric enterobactin esterase; Provisional

Probab=94.47  E-value=0.22  Score=48.81  Aligned_cols=86  Identities=23%  Similarity=0.296  Sum_probs=59.9

Q ss_pred             CcceEEEEEecCC-C-------ceEEEEec----cCCCCCCCCCCCCCCCCCeEEEEEecCCc-eEEEEEEEc---C---
Q 024154           18 SILVPVRFIWPNG-G-------RRVSLSGS----FTRWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVD---G---   78 (271)
Q Consensus        18 ~~~vpVtF~w~~~-a-------k~V~V~Gs----F~nW~~~ipM~k~~~~~g~f~~~~~LppG-~yeYKFiVD---G---   78 (271)
                      ...+.|||-|... +       ++|+|-+.    ...+....+|++..+ +.+|+.++.||.. +-.|+|+++   .   
T Consensus        36 ~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~~-tDvW~~~~~~p~~~r~sY~~~~~~~~~~~~  114 (411)
T PRK10439         36 DGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIAG-TDVWQWSTELSANWRGSYCFIPTERDDIFS  114 (411)
T ss_pred             CCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccCC-CceEEEEEEECcccEEEEEEEecccccccc
Confidence            3458999999862 2       36887422    222433457998874 7899999999997 799999992   1   


Q ss_pred             ----------------------eeecCCCCCeee-CCCCccccEEEecC
Q 024154           79 ----------------------EWRHDENQPHVS-GNYGVVNCVYIAVP  104 (271)
Q Consensus        79 ----------------------~W~~Dp~~P~v~-d~~G~~NNvl~V~~  104 (271)
                                            .-+.||.+|... +..|+..|+++++.
T Consensus       115 ~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~lp~  163 (411)
T PRK10439        115 AFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEMPQ  163 (411)
T ss_pred             ccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccCCC
Confidence                                  114788888754 44566678999844

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=94.46  E-value=0.078  Score=39.69  Aligned_cols=45  Identities=18%  Similarity=0.287  Sum_probs=40.2

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      +++.+..+.+++.|+..|.++++..+|+.| + ++++|++|..|++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~   46 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRR   46 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhc
Confidence            467788899999999999999999999998 3 89999999999875

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.45  E-value=0.074  Score=41.04  Aligned_cols=53  Identities=15%  Similarity=0.347  Sum_probs=44.5

Q ss_pred             ccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       157 cYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      +-+++.  .+.++++-+.++.+|+..|.+++...+|+.|.. +.++|++|..|++.
T Consensus        69 ~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~  121 (122)
T cd04635          69 VEKIMS--TPVYSVTPDDSIATAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK  121 (122)
T ss_pred             HHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence            444443  357888989999999999999999999999865 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=94.45  E-value=0.081  Score=39.91  Aligned_cols=46  Identities=24%  Similarity=0.462  Sum_probs=41.4

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ..+.++.+.++.+++..|.+++...+|+.|. .+.++|++|..|+++
T Consensus        65 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~  110 (111)
T cd04612          65 DPVTASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLR  110 (111)
T ss_pred             CCeEECCCCCHHHHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhh
Confidence            4688899999999999999999999999987 477999999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.43  E-value=0.1  Score=39.62  Aligned_cols=48  Identities=19%  Similarity=0.306  Sum_probs=42.4

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      +++++.-+.++++|+..|.+++...+|+.|..  +|+|++|..|++..+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~G~v~~~dl~~~~~   49 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNE--KPVGIITERDLVKKVV   49 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEECC--EEEEEEEHHHHHHHHh
Confidence            46778889999999999999999999999975  9999999999998553

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.38  E-value=0.1  Score=40.25  Aligned_cols=50  Identities=20%  Similarity=0.349  Sum_probs=44.2

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      ++++++.+.++..|+..|.++++..+|+-|.. ++++|++|..|++..+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~   51 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALS   51 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhcc
Confidence            56788999999999999999999999998864 899999999999886643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.33  E-value=0.09  Score=41.00  Aligned_cols=46  Identities=22%  Similarity=0.476  Sum_probs=41.8

Q ss_pred             CCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHH
Q 024154          164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF  210 (271)
Q Consensus       164 s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~  210 (271)
                      +.+++.++.+-++.+|+..|.++++..+|+=|.+ ++++|++|..|+
T Consensus        75 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di  120 (123)
T cd04627          75 TSDVISINGDQPLIDALHLMHNEGISSVAVVDNQ-GNLIGNISVTDV  120 (123)
T ss_pred             cCCceEeCCCCCHHHHHHHHHHcCCceEEEECCC-CcEEEEEeHHHh
Confidence            4678899999999999999999999999999886 679999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=94.30  E-value=0.073  Score=40.35  Aligned_cols=46  Identities=28%  Similarity=0.457  Sum_probs=40.8

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ....+..+.++.+|+..+.+++...+|+.|.. ++++|++|..|++.
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~  113 (114)
T cd04604          68 NPKTIDPDALAAEALELMEENKITALPVVDDN-GRPVGVLHIHDLLR  113 (114)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence            34678889999999999999999999999875 88999999999875

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.27  E-value=0.14  Score=39.78  Aligned_cols=49  Identities=22%  Similarity=0.251  Sum_probs=43.7

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      +.++++.+.++..|+..|.++++..+|+-|.+ ++++|++|..|+++.+.
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~   50 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASI   50 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHH
Confidence            56889999999999999999999999998864 67999999999998765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=94.27  E-value=0.11  Score=41.24  Aligned_cols=50  Identities=24%  Similarity=0.441  Sum_probs=44.2

Q ss_pred             CCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       164 s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      |..+++++.+.+++.|+..|.++++..+|+-|+ .++++|++|..|++..+
T Consensus         1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~~Gvi~~~dl~~~~   50 (135)
T cd04586           1 TTDVVTVSPETSVAEAARLMLDNHISGLPVVDD-DGRLVGIVSEGDLLRRA   50 (135)
T ss_pred             CCCCEEeCCCCCHHHHHHHHHHcCCCCceEECC-CCCEEEEeeHHHHHHHh
Confidence            456788999999999999999999999999985 48899999999998754

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=94.24  E-value=0.13  Score=39.07  Aligned_cols=47  Identities=15%  Similarity=0.297  Sum_probs=41.9

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      +.+++..+.++++|...|.+++...+++-|.  ++++|+++..|++..+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~   48 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAV   48 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHH
Confidence            4678899999999999999999989999887  6899999999998765

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=94.23  E-value=0.1  Score=39.86  Aligned_cols=55  Identities=22%  Similarity=0.471  Sum_probs=45.1

Q ss_pred             ccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       155 ~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      .++-+++..  ..++++-+.++.+++..|.+++...+|+=|. .++++|++|..|+++
T Consensus        67 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di~~  121 (122)
T cd04585          67 IKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDD-QGRLVGIITESDLFR  121 (122)
T ss_pred             cCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECC-CCcEEEEEEHHHhhh
Confidence            344454433  5788999999999999999999999999885 478999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.21  E-value=0.15  Score=39.29  Aligned_cols=50  Identities=28%  Similarity=0.533  Sum_probs=44.2

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      ++.++..+.++.+|+..|.+++...+|+=|.. ++++|++|..|+++.+..
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~   51 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGR   51 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhh
Confidence            57788999999999999999999999998865 689999999999986643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=94.14  E-value=0.086  Score=49.32  Aligned_cols=63  Identities=17%  Similarity=0.354  Sum_probs=57.6

Q ss_pred             hhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       152 l~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      |...++-|+|=.-.+++.++.+.++.+++..+.+++..-.|+++....+++|++++.|++..+
T Consensus        64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~  126 (292)
T PRK15094         64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFM  126 (292)
T ss_pred             cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHh
Confidence            577799999976679999999999999999999999999999998888999999999998755

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=94.13  E-value=0.08  Score=40.18  Aligned_cols=54  Identities=19%  Similarity=0.322  Sum_probs=44.8

Q ss_pred             cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ++.+++.  ...++++-+.++.+|+..+.+++....|+.|.. +.++|++|..|+++
T Consensus        59 ~v~~i~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~  112 (113)
T cd04587          59 LVERVMT--PNPVCATSDTPVLEALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH  112 (113)
T ss_pred             CHHHhcC--CCCeEEcCCCCHHHHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence            4666653  356678888889999999999999999999875 78999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.09  E-value=0.083  Score=40.54  Aligned_cols=45  Identities=13%  Similarity=0.400  Sum_probs=41.0

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      .++.+..+.++.+|+..|.+++...+|+.|.  +.++|++|..|++.
T Consensus        69 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~  113 (114)
T cd04630          69 PLISVSPDMDIKYCARLMERTNIRRAPVVEN--NELIGIISLTDIFL  113 (114)
T ss_pred             CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence            5788899999999999999999999999986  88999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.07  E-value=0.1  Score=39.59  Aligned_cols=52  Identities=19%  Similarity=0.324  Sum_probs=43.3

Q ss_pred             ccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       157 cYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      +-+++.  ....+++.+.++..|+..|.+++....|+.|  .++++|++|..|++.
T Consensus        60 v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~--~~~~~Gvvt~~dl~~  111 (112)
T cd04625          60 VRAIMN--PEPIVASPDDSIDEVRRLMVERHLRYLPVLD--GGTLLGVISFHDVAK  111 (112)
T ss_pred             HHHHhC--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEE--CCEEEEEEEHHHhhc
Confidence            445553  3467789999999999999999999999998  378999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=94.07  E-value=0.082  Score=40.09  Aligned_cols=46  Identities=11%  Similarity=0.188  Sum_probs=40.6

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      .++.++.+.++..|+..|.+++...+|+.|.. +.++|++|..|++.
T Consensus        65 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~  110 (111)
T cd04590          65 PPLFVPESTPLDDLLEEMRKERSHMAIVVDEY-GGTAGLVTLEDILE  110 (111)
T ss_pred             CCeecCCCCcHHHHHHHHHhcCCcEEEEEECC-CCEEEEeEHHHhhc
Confidence            46778889999999999999999999999864 67999999999874

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=94.03  E-value=0.087  Score=39.98  Aligned_cols=54  Identities=19%  Similarity=0.429  Sum_probs=44.9

Q ss_pred             ccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       155 ~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ..|.+++-.  ..+.++.+.++..|+..|.+++....|+=|  .++++|++|..|++.
T Consensus        56 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~  109 (110)
T cd04595          56 APVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR  109 (110)
T ss_pred             CcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence            345555533  477899999999999999999999999987  578999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=94.03  E-value=0.14  Score=38.71  Aligned_cols=47  Identities=19%  Similarity=0.345  Sum_probs=41.9

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      ++++++.+.++++|...|.++++..+|+-|.  ++++|+++..|++..+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~   48 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRV   48 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHH
Confidence            5678899999999999999999989999887  8999999999998643

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=94.02  E-value=0.12  Score=39.18  Aligned_cols=47  Identities=15%  Similarity=0.265  Sum_probs=41.9

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      .+...++.+.++.+|+..|.+++...+|+.+.. +.++|++|..|++.
T Consensus        63 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~~  109 (110)
T cd04605          63 RNVITATPDEPIDVAARKMERHNISALPVVDAE-NRVIGIITSEDISK  109 (110)
T ss_pred             CCCeEECCCCcHHHHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhhh
Confidence            367788899999999999999999999999865 78999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=93.96  E-value=0.14  Score=39.71  Aligned_cols=50  Identities=22%  Similarity=0.459  Sum_probs=44.5

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      +++.++.+.++..|...|.+++...+|+-|...++++|+++..|++..+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~   51 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLG   51 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhh
Confidence            46778999999999999999999999999987789999999999987654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=93.94  E-value=0.097  Score=39.41  Aligned_cols=45  Identities=22%  Similarity=0.414  Sum_probs=38.1

Q ss_pred             eEEEcc-cchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          167 VTALDV-NLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       167 ~vv~D~-~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      .+.++. +.++.+|+..+.+++...+|+.|. .+.++|++|.+|++.
T Consensus        64 ~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~dil~  109 (110)
T cd04601          64 NLLTTVEGTSLEEALELLHEHKIEKLPVVDD-EGKLKGLITVKDIEK  109 (110)
T ss_pred             ceEEecCCCCHHHHHHHHHHhCCCeeeEEcC-CCCEEEEEEhhhhhc
Confidence            344455 888899999999999999999986 468999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=93.93  E-value=0.14  Score=38.64  Aligned_cols=48  Identities=25%  Similarity=0.485  Sum_probs=42.5

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      +.+.++.+.++.+|...|.++++...|+-|.  +.++|+++..|++..+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~   49 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPA   49 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHh
Confidence            4678899999999999999999988999887  89999999999987553

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=93.90  E-value=0.16  Score=38.30  Aligned_cols=48  Identities=19%  Similarity=0.364  Sum_probs=42.6

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      ++.+++.+.++.+|+..|.+++...+|+-|.  ++++|++|..|+++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~   49 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLA   49 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHh
Confidence            5678899999999999999999989999886  88999999999987653

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=93.89  E-value=0.12  Score=39.36  Aligned_cols=48  Identities=21%  Similarity=0.389  Sum_probs=41.9

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      ..+.++.+.++.+|+..|.+++...+|+=|.. ++++|++|..|+++.|
T Consensus        62 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~~  109 (109)
T cd04606          62 DVISVSADDDQEEVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDVI  109 (109)
T ss_pred             CCeEEcCCCCHHHHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhhC
Confidence            47888899999999999999999888887754 6899999999998753

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=93.87  E-value=0.091  Score=40.52  Aligned_cols=46  Identities=26%  Similarity=0.397  Sum_probs=41.3

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      .++++..+-++.+|+..|.++++...|+.|.+ ++++|++|..|++.
T Consensus        68 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~  113 (114)
T cd04619          68 AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK  113 (114)
T ss_pred             CCeeECCCCCHHHHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence            57788888889999999999999999999855 68999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=93.81  E-value=0.16  Score=38.42  Aligned_cols=50  Identities=26%  Similarity=0.308  Sum_probs=43.0

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      +.+.++.+.++.+|...|.+.+...+|+-|.. ++++|+++..|++..+..
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~   51 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAE   51 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHh
Confidence            45678899999999999999999999998864 789999999999986643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=93.78  E-value=0.11  Score=38.79  Aligned_cols=44  Identities=14%  Similarity=0.339  Sum_probs=40.6

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i  211 (271)
                      ..++++.+.++..|+..|.+++...+|+-|.  ++++|++|..|++
T Consensus        60 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~  103 (105)
T cd04599          60 EVVTISPEASLLEAKRLMEEKKIERLPVLRE--RKLVGIITKGTIA  103 (105)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhc
Confidence            5778899999999999999999999999986  8999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=93.77  E-value=0.11  Score=39.30  Aligned_cols=46  Identities=28%  Similarity=0.398  Sum_probs=40.7

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ....+..+.++.+|+..+.+++...+|+.|.. +.++|++|..|+++
T Consensus        67 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~  112 (113)
T cd04622          67 GVVTVTEDDDVDEAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR  112 (113)
T ss_pred             CccEECCCCCHHHHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            46677888899999999999999999999864 78999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=93.72  E-value=0.11  Score=39.44  Aligned_cols=53  Identities=19%  Similarity=0.449  Sum_probs=44.0

Q ss_pred             cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ++.+++.  ...+.+..+.++..|+..|.++++..+|+.|.  +.++|++|..|++.
T Consensus        58 ~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~  110 (111)
T cd04626          58 KVFNIVS--QDVFYVNEEDTIDEALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD  110 (111)
T ss_pred             cHHHHhc--CCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence            3444443  46777888899999999999999999999986  78999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=93.71  E-value=0.11  Score=39.43  Aligned_cols=45  Identities=20%  Similarity=0.343  Sum_probs=41.2

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      +.++++.+.++.+|+..+.+++....|+=|.  +.++|++|..|++.
T Consensus        69 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  113 (114)
T cd04629          69 EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR  113 (114)
T ss_pred             CceEECCCCcHHHHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence            6788999999999999999999999999886  79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=93.70  E-value=0.17  Score=39.02  Aligned_cols=49  Identities=14%  Similarity=0.357  Sum_probs=43.5

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      +++.+..+.++++|+..|.++++...|+-|.  ++++|++|..|+.+.+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~   50 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISP   50 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHH
Confidence            5678899999999999999999999999996  899999999999876543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=93.67  E-value=0.2  Score=37.92  Aligned_cols=50  Identities=18%  Similarity=0.311  Sum_probs=43.1

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      +++++..+.++++|...|.++++...|+-|.+ ++++|++|..|+++.+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~   51 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAA   51 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhc
Confidence            45678889999999999999999889988876 899999999999876543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=93.65  E-value=0.13  Score=39.00  Aligned_cols=46  Identities=22%  Similarity=0.422  Sum_probs=40.7

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      +..+++.+.++.+|+..|.+++....|+.|.. ++++|++|..|++.
T Consensus        67 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~  112 (113)
T cd04615          67 PVITIDANDSIAKARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR  112 (113)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence            57778889999999999999999999999855 68999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=93.65  E-value=0.12  Score=50.40  Aligned_cols=62  Identities=16%  Similarity=0.319  Sum_probs=57.6

Q ss_pred             hhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHH
Q 024154          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI  213 (271)
Q Consensus       152 l~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~i  213 (271)
                      |...++-|+|=.-.+++.+|.+.+++++...+.++|+.--|+++....+++|+++..|++..
T Consensus       188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~  249 (408)
T TIGR03520       188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPH  249 (408)
T ss_pred             cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhH
Confidence            46889999997778999999999999999999999999999999888999999999999853

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=93.60  E-value=0.16  Score=38.59  Aligned_cols=54  Identities=20%  Similarity=0.428  Sum_probs=44.5

Q ss_pred             cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      .+.+++.  ...++++.+.++.+|+..|.+++....|+=|.. +.++|++|..|+++
T Consensus        54 ~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~  107 (108)
T cd04596          54 TIEKVMT--KNPITVNPKTSVASVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK  107 (108)
T ss_pred             cHHHHhc--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence            3444443  357789999999999999999999999998854 68999999999874

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=93.59  E-value=0.12  Score=40.81  Aligned_cols=53  Identities=26%  Similarity=0.532  Sum_probs=44.3

Q ss_pred             cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ++-+++..  ..+.++.+.++..|+..+.+++...+|+-|.  +.++|++|..|++.
T Consensus        79 ~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~  131 (132)
T cd04636          79 KVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR  131 (132)
T ss_pred             CHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence            44444432  4678899999999999999999999999987  88999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=93.56  E-value=0.15  Score=38.90  Aligned_cols=46  Identities=20%  Similarity=0.386  Sum_probs=40.7

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i  211 (271)
                      ..+.++.-+.++..|+..|.+++...+|+.|.. ++++|++|..|++
T Consensus        66 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~  111 (113)
T cd04607          66 RNPITAKVGSSREEILALMRERSIRHLPILDEE-GRVVGLATLDDLL  111 (113)
T ss_pred             CCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhc
Confidence            346788899999999999999999999999854 7899999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=93.47  E-value=0.15  Score=39.07  Aligned_cols=48  Identities=19%  Similarity=0.364  Sum_probs=42.5

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCC-CCceeeeechHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF-KGRFVGVLSALDFIL  212 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~-~~~f~G~lt~tD~i~  212 (271)
                      ...+++..+.++.+|+..|.+++...+|+.|.. .+.++|++|.+|+++
T Consensus        66 ~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          66 PPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             CCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            357788889999999999999999999999876 368999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=93.46  E-value=0.2  Score=38.04  Aligned_cols=47  Identities=23%  Similarity=0.436  Sum_probs=41.7

Q ss_pred             eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      .+++..+.++..|+..+.+.++...|+.|.. ++++|++|..|++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~   49 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYA   49 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhh
Confidence            5677889999999999999999999999874 7899999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=93.41  E-value=0.23  Score=39.41  Aligned_cols=50  Identities=18%  Similarity=0.386  Sum_probs=43.4

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      +++.+.-+.++.+|+..|.++++...|+-|.+ ++++|++|..|++..+..
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~   52 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSS   52 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHH
Confidence            46778889999999999999999999998865 689999999999986553

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=93.40  E-value=0.18  Score=39.68  Aligned_cols=46  Identities=20%  Similarity=0.474  Sum_probs=41.2

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      +.+.+..+.++.+|+..|.++++..+|+=|.. ++++|++|..|+..
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~   47 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLG   47 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhh
Confidence            45778899999999999999999999999965 78999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=93.39  E-value=0.22  Score=37.75  Aligned_cols=46  Identities=22%  Similarity=0.390  Sum_probs=40.6

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ++++++..+.++..|+..|.+++...+++-|.  ++++|++|..|++.
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~   46 (113)
T cd04587           1 TKPATVSPTTTVQEAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIAL   46 (113)
T ss_pred             CCCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHH
Confidence            35678889999999999999999888888885  89999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=93.37  E-value=0.092  Score=41.31  Aligned_cols=40  Identities=20%  Similarity=0.215  Sum_probs=35.1

Q ss_pred             cchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          173 NLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       173 ~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      +-++..|+..|.++++..+|+-|.+.++++|++|..|+++
T Consensus        86 ~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          86 NASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             cCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            4578899999999999999999876457999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=93.29  E-value=0.23  Score=38.17  Aligned_cols=48  Identities=17%  Similarity=0.346  Sum_probs=41.8

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      +.++++.+.++.+|+..|.+++...+++=|. .++++|++|..|++++.
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~   49 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDE-ENKVLGQVTLSDLLEIG   49 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHhhc
Confidence            5678899999999999999999988888774 58999999999998753

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=93.27  E-value=0.16  Score=39.35  Aligned_cols=46  Identities=15%  Similarity=0.261  Sum_probs=41.0

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      +++.+..+.++.+|+..|.++++..+|+=|.. +.++|++|..|++.
T Consensus        74 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~-~~~~Givt~~di~~  119 (120)
T cd04641          74 GVRTCSPDDCLRTIFDLIVKARVHRLVVVDEN-KRVEGIISLSDILQ  119 (120)
T ss_pred             CCeEEcCCCcHHHHHHHHHhcCccEEEEECCC-CCEEEEEEHHHhhc
Confidence            56788888999999999999999999998865 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=93.25  E-value=0.12  Score=39.44  Aligned_cols=46  Identities=20%  Similarity=0.360  Sum_probs=38.3

Q ss_pred             CeEEEcc--cchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDV--NLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~--~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      .++.+..  ..++.+|+..|.+++...+|+=|.+ +.++||+|..|+++
T Consensus        67 ~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~  114 (115)
T cd04620          67 PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ  114 (115)
T ss_pred             CcEEEecccccCHHHHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence            3445543  3789999999999999999998865 78999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PLN02960 alpha-amylase

Probab=93.12  E-value=0.11  Score=55.49  Aligned_cols=53  Identities=28%  Similarity=0.512  Sum_probs=40.7

Q ss_pred             EEEEecCCCceEEEEeccCCCCCCC-CCC-----CCCCCCCeEEEEEe--cCCce-------EEEEEEEc
Q 024154           23 VRFIWPNGGRRVSLSGSFTRWSEPM-PMS-----PSEGCPAVFQIICR--LPPGH-------HQYKFYVD   77 (271)
Q Consensus        23 VtF~w~~~ak~V~V~GsF~nW~~~i-pM~-----k~~~~~g~f~~~~~--LppG~-------yeYKFiVD   77 (271)
                      .-..|..+|+.++|+|+||||.++. .|.     +++  -|+|.++++  |..|.       -||.|..|
T Consensus       131 ~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (897)
T PLN02960        131 DFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDD--FGYWFIILEDKLREGEEPDELYFQEYNYVDD  198 (897)
T ss_pred             EEEEEcCCceeEEEeecccCCCcccchhhcccccccc--cceEEEEechhhhcCCCcchhhhhhhccccc
Confidence            3457899999999999999999863 555     554  689999986  76652       46778775

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=93.06  E-value=0.21  Score=37.82  Aligned_cols=44  Identities=18%  Similarity=0.484  Sum_probs=40.4

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i  211 (271)
                      ++++++.+.++++|+..|.+++...+|+-|.  ++|+|++|..|.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~   45 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIV   45 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHH
Confidence            4678899999999999999999999999987  9999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=93.05  E-value=0.15  Score=41.26  Aligned_cols=52  Identities=23%  Similarity=0.504  Sum_probs=43.4

Q ss_pred             ccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       157 cYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      +-+++..  ..+.++-+.++.+|+..|.+++...+|+.+.  +.++|++|..|++.
T Consensus        91 v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~  142 (143)
T cd04634          91 VRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            4444432  5778888888999999999999999999987  78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=93.02  E-value=0.18  Score=38.10  Aligned_cols=48  Identities=19%  Similarity=0.324  Sum_probs=41.8

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      .+...++.+.++.+|+..+..++...+|+-|...+.++|++|..|++.
T Consensus        66 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          66 KPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             CCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            357788899999999999999999999998763578999999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=92.88  E-value=0.22  Score=38.40  Aligned_cols=47  Identities=23%  Similarity=0.486  Sum_probs=41.3

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ...+.++.+.++.+|+..|.+++...+|+.|.. ++++|++|..|++.
T Consensus        75 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~  121 (122)
T cd04803          75 TDVLTVTPDTPLREAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR  121 (122)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence            356788889999999999999999999999875 58999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02950 4-alpha-glucanotransferase

Probab=92.79  E-value=0.9  Score=49.05  Aligned_cols=68  Identities=21%  Similarity=0.437  Sum_probs=50.7

Q ss_pred             CCcceEEEEEecC----CCceEEEEeccC---CCCCC--CCCCCCCCCCCeEEEEEecCCc--eEEEEEEE---cC--ee
Q 024154           17 GSILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPPG--HHQYKFYV---DG--EW   80 (271)
Q Consensus        17 ~~~~vpVtF~w~~----~ak~V~V~GsF~---nW~~~--ipM~k~~~~~g~f~~~~~LppG--~yeYKFiV---DG--~W   80 (271)
                      ....++|+|+...    .+++|+|+|+-.   +|++.  .+|....  ...|++++.++++  ..+|||++   +|  .|
T Consensus       149 ~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~--~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~W  226 (909)
T PLN02950        149 APDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTG--DSIWEADCLVPKSDFPIKYKYALQTAEGLVSL  226 (909)
T ss_pred             CCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCC--CCcEEEEEEecCCCceEEEEEEEEcCCCceEE
Confidence            3456889999864    478999999876   89864  5676533  6789999999987  49999998   34  46


Q ss_pred             ecCCCC
Q 024154           81 RHDENQ   86 (271)
Q Consensus        81 ~~Dp~~   86 (271)
                      -..++.
T Consensus       227 E~g~NR  232 (909)
T PLN02950        227 ELGVNR  232 (909)
T ss_pred             eeCCCc
Confidence            544443

>PLN02950 4-alpha-glucanotransferase

Probab=92.73  E-value=0.91  Score=49.02  Aligned_cols=61  Identities=26%  Similarity=0.469  Sum_probs=45.3

Q ss_pred             CCCcceEEEEEecC---CCceEEEEeccC---CCCCC--CCCCCCC-CCCCeEEEEEecCCc-eEEEEEEE
Q 024154           16 VGSILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE-GCPAVFQIICRLPPG-HHQYKFYV   76 (271)
Q Consensus        16 ~~~~~vpVtF~w~~---~ak~V~V~GsF~---nW~~~--ipM~k~~-~~~g~f~~~~~LppG-~yeYKFiV   76 (271)
                      +.+..+.|+|.-++   -|++|.|+|+-.   +|...  ++|+... .....|++++.|++| ..+|||++
T Consensus         4 ~~~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~   74 (909)
T PLN02950          4 KSLKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYV   74 (909)
T ss_pred             CCCCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEE
Confidence            34455778888775   489999999885   68754  6886532 113489999999987 59999995

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=92.73  E-value=0.21  Score=38.26  Aligned_cols=45  Identities=24%  Similarity=0.460  Sum_probs=40.4

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ..+.++.+.++.+|+..|.+++...+|+-|.  ++++|++|..|+++
T Consensus        76 ~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~  120 (121)
T cd04584          76 DVITVHPLDTVEEAALLMREHRIGCLPVVED--GRLVGIITETDLLR  120 (121)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence            5678899999999999999999998999875  88999999999874

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=92.69  E-value=0.22  Score=37.78  Aligned_cols=46  Identities=22%  Similarity=0.330  Sum_probs=40.5

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ..+++..+.++.+|+..|.++++..+|+.|.. +.++|++|..|+++
T Consensus        66 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~  111 (112)
T cd04624          66 DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR  111 (112)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence            47778888889999999999999999999875 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=92.68  E-value=0.29  Score=36.66  Aligned_cols=48  Identities=10%  Similarity=0.137  Sum_probs=40.9

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      ..+.++.+.++..|+..|.++++...++-|.. ++++|++|..|++...
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~   49 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARAS   49 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhc
Confidence            45677888999999999999998888888764 8999999999998753

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=92.66  E-value=0.2  Score=37.92  Aligned_cols=46  Identities=20%  Similarity=0.395  Sum_probs=40.7

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ..+.++-+.++.+|+.+|.+++...+|+=|.+ ++++|++|..|++.
T Consensus        65 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~  110 (111)
T cd04639          65 DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE  110 (111)
T ss_pred             CCcEECCCCcHHHHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence            56788999999999999999999999998754 78999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=92.65  E-value=0.24  Score=37.43  Aligned_cols=47  Identities=21%  Similarity=0.349  Sum_probs=41.6

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ...+.++.+.++.+|+..|.++++...|+.|.. ++++|++|..|++.
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~  109 (110)
T cd04588          63 KDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR  109 (110)
T ss_pred             CCceEECCCCCHHHHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence            377889999999999999999999999999764 68999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=92.63  E-value=0.21  Score=38.53  Aligned_cols=46  Identities=24%  Similarity=0.452  Sum_probs=41.5

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      .++.+..+.++.+|+..|.++++...|+.|. .++++|++|..|++.
T Consensus        78 ~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~~  123 (124)
T cd04600          78 PVVTVRPDTPIAELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLIA  123 (124)
T ss_pred             CCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhhc
Confidence            5778889999999999999999999999996 578999999999874

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=92.58  E-value=0.2  Score=39.27  Aligned_cols=45  Identities=24%  Similarity=0.434  Sum_probs=40.4

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i  211 (271)
                      ++.++.-+.++++|+..|.++++...|+-|.+ ++++||+|..|+.
T Consensus        67 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~  111 (113)
T cd04597          67 KPVTARPNDPLREALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLA  111 (113)
T ss_pred             CCCEECCcCcHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhh
Confidence            57778889999999999999999999999975 6799999999975

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=92.52  E-value=0.33  Score=37.05  Aligned_cols=48  Identities=19%  Similarity=0.376  Sum_probs=40.2

Q ss_pred             CeEEEcccchHHHHHHHHHHcC-CCeeccccCCCCceeeeechHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQG-LPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g-~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      +.++++.+.++..|...+.+++ ....++=|.  ++++|++|..|++..+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~   50 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTA   50 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHh
Confidence            4567889999999999998888 667777773  78999999999987653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=92.51  E-value=0.31  Score=37.27  Aligned_cols=48  Identities=21%  Similarity=0.253  Sum_probs=42.2

Q ss_pred             eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      ..+++.+.++.+|...|.+.++..+|+-|.. ++++|+++..|+.+.+.
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~   50 (115)
T cd04593           3 PPVLSATTPLREAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALE   50 (115)
T ss_pred             CcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHh
Confidence            4577889999999999999999999999875 78999999999998664

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=92.48  E-value=0.24  Score=38.75  Aligned_cols=55  Identities=22%  Similarity=0.286  Sum_probs=45.3

Q ss_pred             cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccC-CCCceeeeechHHHHH
Q 024154          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDD-FKGRFVGVLSALDFIL  212 (271)
Q Consensus       156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds-~~~~f~G~lt~tD~i~  212 (271)
                      .+.+++.  .+++++..+.++.+|+..|.+++...+|+=+. +.+.++|++|..|++.
T Consensus        72 ~~~~~~~--~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          72 PVYDAMS--SPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             cHHHHhc--CCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            4666654  36888999999999999999999988888653 5688999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=92.37  E-value=0.38  Score=36.66  Aligned_cols=49  Identities=20%  Similarity=0.287  Sum_probs=42.7

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      |-++++.+.++..|...|.++++..+++-|.. ++++|++|..|++..+.
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~   51 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALL   51 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHh
Confidence            56788999999999999999999999988874 78999999999987553

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=92.35  E-value=0.91  Score=44.96  Aligned_cols=48  Identities=17%  Similarity=0.431  Sum_probs=44.1

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCC--CceeeeechHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK--GRFVGVLSALDFIL  212 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~--~~f~G~lt~tD~i~  212 (271)
                      .+++.++.+.++.+|+..|.++++...|+-|...  .+++|++|..|++.
T Consensus        88 ~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~  137 (450)
T TIGR01302        88 SDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRF  137 (450)
T ss_pred             cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhh
Confidence            4789999999999999999999999999999865  79999999999874

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=92.34  E-value=0.28  Score=37.47  Aligned_cols=49  Identities=18%  Similarity=0.305  Sum_probs=41.1

Q ss_pred             CeEEEcccchHHHHHHHHHHcC-CCeeccccCCCCceeeeechHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQG-LPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g-~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      ++..+..+.++++|+..|.+++ ...+|+-|. .++++|++|..|++..+.
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~   51 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN-EGRYVGIISLADLRAIPT   51 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcC-CCcEEEEEEHHHHHHHHH
Confidence            4567889999999999988775 888998885 478999999999987654

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=92.20  E-value=0.37  Score=36.93  Aligned_cols=49  Identities=20%  Similarity=0.392  Sum_probs=42.7

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      ++.+++.+.++..|...+.+++....|+-|.. ++++|+++..|++..+.
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~   50 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASP   50 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhh
Confidence            46788889999999999999999899999885 88999999999876543

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=92.19  E-value=0.28  Score=37.92  Aligned_cols=46  Identities=24%  Similarity=0.465  Sum_probs=41.4

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ++++++-+.++.+++..+.+++...+|+=|.. +.++||+|..|+++
T Consensus        79 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~  124 (125)
T cd04631          79 NVITITPDDSIKDAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK  124 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence            58899999999999999999999999998754 78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=92.13  E-value=0.34  Score=36.24  Aligned_cols=46  Identities=20%  Similarity=0.445  Sum_probs=40.4

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ..+.++.+.++..|+..+.+++...+|+.|.. ++++|++|..|++.
T Consensus        61 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~  106 (107)
T cd04610          61 DLVVAVPEMDIMDAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR  106 (107)
T ss_pred             CCeEECCCCCHHHHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence            46778888899999999999999999999865 68999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PLN02316 synthase/transferase

Probab=92.01  E-value=0.76  Score=50.18  Aligned_cols=59  Identities=14%  Similarity=0.287  Sum_probs=45.1

Q ss_pred             eEEEEEecC------CCceEEEEeccCCCCCCC----CCCCCC-CCCCeEEEEEecCCceEEEEEEE-cCe
Q 024154           21 VPVRFIWPN------GGRRVSLSGSFTRWSEPM----PMSPSE-GCPAVFQIICRLPPGHHQYKFYV-DGE   79 (271)
Q Consensus        21 vpVtF~w~~------~ak~V~V~GsF~nW~~~i----pM~k~~-~~~g~f~~~~~LppG~yeYKFiV-DG~   79 (271)
                      .+|++.|+.      ++.+|+|.|.||+|+...    .|.+.+ +.+++|+.++.+|+.-|-.-|+. ||.
T Consensus       329 ~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg~  399 (1036)
T PLN02316        329 DTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADGP  399 (1036)
T ss_pred             CEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecCC
Confidence            578888873      468999999999998632    233333 23458999999999999999998 773

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=92.00  E-value=0.42  Score=36.21  Aligned_cols=49  Identities=14%  Similarity=0.297  Sum_probs=42.4

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      ++++++.+.+++.|+..+.+++....|+-|. .++++|+++..|++....
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~   50 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN-EEKLKGVVTFTDILDLDL   50 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcC-CCCEEEEEehHHhHHHHh
Confidence            5678899999999999999999988998876 478999999999987543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=91.91  E-value=0.26  Score=37.31  Aligned_cols=45  Identities=16%  Similarity=0.371  Sum_probs=40.0

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ..+.++.+.++..|+..|.+++...+|+=|  .++++|++|..|+++
T Consensus        59 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~--~~~~iGvit~~dl~~  103 (104)
T cd04594          59 GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD--DGKFKGIVTLDSILD  103 (104)
T ss_pred             CCcEEcCCCCHHHHHHHHHHcCcceEEEEE--CCEEEEEEEHHHhhc
Confidence            467889999999999999999999888887  489999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=91.88  E-value=0.26  Score=37.81  Aligned_cols=45  Identities=16%  Similarity=0.326  Sum_probs=40.1

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ..+.++.+.++.+|+..|.+++...+|+=  +.++++|++|..|++.
T Consensus        60 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVv--~~~~~~Gvvt~~dl~~  104 (105)
T cd04591          60 SPFTVSPRTSLEKVHQLFRKLGLRHLLVV--DEGRLVGIITRKDLLK  104 (105)
T ss_pred             CCceECCCCcHHHHHHHHHHcCCCEEEEE--ECCeEEEEEEhhhhhc
Confidence            57788999999999999999999999886  4689999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>COG0517 FOG: CBS domain [General function prediction only]

Probab=91.84  E-value=0.27  Score=37.38  Aligned_cols=46  Identities=24%  Similarity=0.526  Sum_probs=42.8

Q ss_pred             CeEEEcccchHHHHHHHHHH-cCCCeeccccCCCCceeeeechHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYE-QGLPMVPLWDDFKGRFVGVLSALDFI  211 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~-~g~~~aplwds~~~~f~G~lt~tD~i  211 (271)
                      .++..+.+.++..|...+.+ +++...|+=|.+..+++|++|.+|++
T Consensus        71 ~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          71 PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence            78899999999999999999 69999999998877999999999974

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=91.78  E-value=0.41  Score=37.81  Aligned_cols=50  Identities=24%  Similarity=0.400  Sum_probs=43.4

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      .++++..+.++++|+..|.++++...|+-|.. ++++|+++..|++..+..
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~   51 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYK   51 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhc
Confidence            35678899999999999999999999998874 789999999999987653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=91.71  E-value=0.38  Score=37.09  Aligned_cols=46  Identities=20%  Similarity=0.442  Sum_probs=41.0

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      +.++++-+.++.+|+..+.++++..+|+.|.. +.++|++|..|+++
T Consensus        76 ~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~  121 (122)
T cd04637          76 DPITVSPDTPVDEASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK  121 (122)
T ss_pred             CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence            57788999999999999999999999998765 68999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX

Probab=91.69  E-value=0.39  Score=50.19  Aligned_cols=55  Identities=22%  Similarity=0.441  Sum_probs=39.7

Q ss_pred             EEEEEe-cCCCceEEEEeccCCCCC----CCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCee
Q 024154           22 PVRFIW-PNGGRRVSLSGSFTRWSE----PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW   80 (271)
Q Consensus        22 pVtF~w-~~~ak~V~V~GsF~nW~~----~ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVDG~W   80 (271)
                      -++|+. ...|++|.|+ -|+++..    .++|.+..  .|+|++.+. +.+|. .|+|.|+|.|
T Consensus        15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~g~-~Y~yrv~g~~   75 (688)
T TIGR02100        15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPERT--DDIWHGYLPGAQPGQ-LYGYRVHGPY   75 (688)
T ss_pred             cEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCC--CCEEEEEECCCCCCC-EEEEEEeeee
Confidence            467755 5679999987 4555432    35888754  689999986 66776 5999999853

This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=91.63  E-value=0.38  Score=35.38  Aligned_cols=46  Identities=26%  Similarity=0.550  Sum_probs=40.5

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ..+.+..+.++..|+..|.+++...+|+=|.. ++++|++|..|++.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~  112 (113)
T cd02205          67 DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDILR  112 (113)
T ss_pred             CceecCCCcCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHhhc
Confidence            46666788899999999999999999998887 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=91.58  E-value=0.38  Score=36.02  Aligned_cols=45  Identities=16%  Similarity=0.347  Sum_probs=39.5

Q ss_pred             eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      .++++.+.++..|+..|.++++..+|+=|.. ++++|++|..|+++
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~  105 (106)
T cd04582          61 KVTVSVDDDLRIVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD  105 (106)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            4568888899999999999999999998754 78999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=91.47  E-value=0.55  Score=35.13  Aligned_cols=48  Identities=8%  Similarity=0.191  Sum_probs=41.9

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      +.++++.+.++..|...|.++++..+|+-|.. ++++|++|..|.++.+
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~   50 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAY   50 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHh
Confidence            45778899999999999999999999998864 7899999999998754

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=91.41  E-value=0.65  Score=35.59  Aligned_cols=51  Identities=20%  Similarity=0.263  Sum_probs=45.1

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCC--CCceeeeechHHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRE  216 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~--~~~f~G~lt~tD~i~il~~  216 (271)
                      .+..++.+.++.+|...+.+++....|+-|..  .++++|+++..|+.+.+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~   55 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN   55 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH
Confidence            46788999999999999999998889999986  5899999999999987753

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=91.38  E-value=0.43  Score=36.07  Aligned_cols=45  Identities=22%  Similarity=0.233  Sum_probs=40.0

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      |=+.+..+.++..|+..|.+++...+|+-|.  ++++|+++..|+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~   46 (104)
T cd04594           2 KDIKVKDYDKVYEAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIEN   46 (104)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhh
Confidence            3467788999999999999999999999985  99999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=91.32  E-value=0.41  Score=36.77  Aligned_cols=47  Identities=17%  Similarity=0.409  Sum_probs=41.9

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI  213 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~i  213 (271)
                      +++++..+.++.+|+..|.++++..+|+-|. .+.++|++|..|+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~   48 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK-AGELIGIITRRDIIRA   48 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECC-CCcEEEEEEcHHHHhh
Confidence            4678899999999999999999999999885 5899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=91.31  E-value=0.46  Score=38.27  Aligned_cols=48  Identities=19%  Similarity=0.290  Sum_probs=41.7

Q ss_pred             eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      ++.+..+.++..|+..|.++++..+|+-|. .++++|++|..|++..+.
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~-~~~~~Giv~~~dl~~~~~   50 (135)
T cd04621           3 IATVHPEHSLLHVVDEMEKNGVGRVIVVDD-NGKPVGVITYRDLAFAEF   50 (135)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCCCcceEECC-CCCEEEEEeHHHHHHHhh
Confidence            456677889999999999999999999985 589999999999998663

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=91.31  E-value=0.38  Score=36.22  Aligned_cols=46  Identities=26%  Similarity=0.486  Sum_probs=40.0

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ...++++.+.++++|+..+.+++...+|+=|.  ++++|++|..|++.
T Consensus        60 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~  105 (106)
T cd04638          60 RDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR  105 (106)
T ss_pred             CCCceECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            35677788888999999999999999999884  58999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=91.31  E-value=0.53  Score=35.61  Aligned_cols=49  Identities=27%  Similarity=0.370  Sum_probs=42.0

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      +++++..+.++.+|...|.+++....|+-|.. ++++|++|..|++..+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~   50 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLL   50 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhh
Confidence            46788899999999999999999888988864 67999999999987553

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=91.18  E-value=0.37  Score=36.93  Aligned_cols=46  Identities=17%  Similarity=0.286  Sum_probs=37.4

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ..+....+-++.+|+..|.++++...|+=|.. +.++|++|..|++.
T Consensus        68 ~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~  113 (114)
T cd04602          68 VLVVAPTGITLEEANEILRESKKGKLPIVNDD-GELVALVTRSDLKK  113 (114)
T ss_pred             eEEECCCCCCHHHHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence            34444347788999999999999999998754 57999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=91.08  E-value=0.49  Score=45.09  Aligned_cols=68  Identities=16%  Similarity=0.368  Sum_probs=59.6

Q ss_pred             HHhHHHHHHhhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          142 QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       142 ~~~~~~~~~fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      +..+..|+.=+.+-+|=|+|-  -.||-.-++-++..|..-|.++++.+-|+-|.. .+.+|+.|.+|+..
T Consensus       232 ~~elqa~~R~~~~LtcadIMS--rdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~-~rl~GiVt~~dl~~  299 (382)
T COG3448         232 ETELQALRRRMGELTCADIMS--RDVVTVSTDTSIDHARKLLQEHRIKALPVLDEH-RRLVGIVTQRDLLK  299 (382)
T ss_pred             HHHHHHHHHHhccccHHHhcC--ccceecCCcCChHHHHHHHHHcCcccccccccc-cceeeeeeHHHHhh
Confidence            347778888889999999985  557788888899999999999999999999976 78999999999876

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=91.05  E-value=0.42  Score=38.52  Aligned_cols=45  Identities=22%  Similarity=0.379  Sum_probs=40.4

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      .++.++-+.++.+|+..|.++++..+|+=|.  ++++|+||..|++.
T Consensus        90 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~  134 (135)
T cd04621          90 EIITVSPNDDVVDAAKLMLEANISGLPVVDN--DNIVGVITKTDICR  134 (135)
T ss_pred             CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence            5678889999999999999999999999876  78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=91.04  E-value=0.45  Score=35.89  Aligned_cols=50  Identities=24%  Similarity=0.400  Sum_probs=42.2

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      ++.++..+.++..|...+.+.+....|+-|.. ++++|+++..|++..+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~   52 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEK   52 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhc
Confidence            45567788899999999988888889988875 789999999999987754

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=90.99  E-value=0.5  Score=35.34  Aligned_cols=53  Identities=15%  Similarity=0.409  Sum_probs=43.6

Q ss_pred             ccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       157 cYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      +-+++.  .+.++++-+.++.+|+..+.+++...+|+=|.+ ++++|++|.+|+++
T Consensus        56 v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~  108 (109)
T cd04583          56 LEDIML--EDVFTVQPDASLRDVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD  108 (109)
T ss_pred             HhHhhc--CCceEECCCCcHHHHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence            444443  357788999999999999999999999998854 58999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=90.91  E-value=0.43  Score=36.53  Aligned_cols=47  Identities=19%  Similarity=0.335  Sum_probs=40.7

Q ss_pred             eEEEcccchHHHHHHHHHHcC-CCeeccccCCCCceeeeechHHHHHHHH
Q 024154          167 VTALDVNLAVKQAFHVLYEQG-LPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       167 ~vv~D~~l~v~~Af~al~~~g-~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      +.++..+.++++|+..+.+++ +..+|+=|.  +.++|+++..|+...+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~   50 (119)
T cd04598           3 APTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLS   50 (119)
T ss_pred             cCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHh
Confidence            456778889999999998887 888999998  89999999999987654

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=90.89  E-value=0.44  Score=36.10  Aligned_cols=45  Identities=20%  Similarity=0.313  Sum_probs=40.1

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ++..+..+.++.+++..|.+++...+|+=|.  ++++|++|..|++.
T Consensus        66 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~  110 (111)
T cd04589          66 PLITVDPDDFLFNALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS  110 (111)
T ss_pred             CcEEECCCCcHHHHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence            5777888899999999999999999999874  78999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=90.83  E-value=0.67  Score=34.77  Aligned_cols=54  Identities=22%  Similarity=0.396  Sum_probs=44.0

Q ss_pred             cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      .+.+++.  ...+.+.-+.++.+|+..|.+++...+|+=|.. +.++|++|..|++.
T Consensus        57 ~v~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~  110 (111)
T cd04611          57 PVGEVMS--SPLLTVPADTSLYDARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ  110 (111)
T ss_pred             CHHHhcC--CCceEECCCCCHHHHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence            3445443  357888889999999999999999889998864 68999999999875

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=90.74  E-value=0.64  Score=34.94  Aligned_cols=46  Identities=20%  Similarity=0.330  Sum_probs=40.9

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      +++.++.+.++++|+..+.++++...|+-|.. ++++|+++..|++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~   47 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLR   47 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHh
Confidence            57888989999999999999998889998876 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=90.61  E-value=0.63  Score=34.75  Aligned_cols=46  Identities=28%  Similarity=0.469  Sum_probs=39.8

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      .+++++..+.++.+|+..+.+++....|+-|.  ++++|+++..|++.
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~   47 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLG   47 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence            45788899999999999999888877888774  89999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive

Probab=90.57  E-value=0.61  Score=51.31  Aligned_cols=66  Identities=12%  Similarity=0.206  Sum_probs=47.5

Q ss_pred             EEEE-ecCCCceEEEEe-ccCCCCC---CCCCCCCCCCCCeEEEEEe-cCCc-----eEEEEEEEcC----eeecCCCCC
Q 024154           23 VRFI-WPNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICR-LPPG-----HHQYKFYVDG----EWRHDENQP   87 (271)
Q Consensus        23 VtF~-w~~~ak~V~V~G-sF~nW~~---~ipM~k~~~~~g~f~~~~~-LppG-----~yeYKFiVDG----~W~~Dp~~P   87 (271)
                      ++|+ |...|++|.|++ ++++|..   .++|.+.+  .|+|++.+. +.+|     -+.|+|.|++    ..+.||...
T Consensus       329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~--~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~  406 (1111)
T TIGR02102       329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGD--RGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK  406 (1111)
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCC--CCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence            6675 567899999998 4455653   46898755  799999987 4432     4688888876    467888776


Q ss_pred             eee
Q 024154           88 HVS   90 (271)
Q Consensus        88 ~v~   90 (271)
                      .+.
T Consensus       407 al~  409 (1111)
T TIGR02102       407 SLA  409 (1111)
T ss_pred             EEe
Confidence            543

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=90.38  E-value=0.51  Score=35.70  Aligned_cols=45  Identities=22%  Similarity=0.524  Sum_probs=39.7

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      .++++.-+.++.+|+..|.+++....|+=|..  .++|++|..|++.
T Consensus        67 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~--~~~Gvi~~~di~~  111 (112)
T cd04802          67 PLITIDPNASLNEAAKLMAKHGIKRLPVVDDD--ELVGIVTTTDIVM  111 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC--EEEEEEEhhhhhc
Confidence            57778889999999999999999889998754  8999999999873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=89.85  E-value=0.78  Score=44.76  Aligned_cols=65  Identities=20%  Similarity=0.302  Sum_probs=54.4

Q ss_pred             HHHhhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       148 ~~~fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      ..++|+..++-|+|-  .+++++..+.++.+|+..|.++++..+|+-|.. ++++||+|..|+...+.
T Consensus       328 ~~~~l~~~~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~  392 (454)
T TIGR01137       328 VFDVLKNATVKDLHL--PAPVTVHPTETVGDAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALF  392 (454)
T ss_pred             HHHHhccCCHHHhCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHh
Confidence            445577788888773  468889999999999999999999999998854 78999999999988554

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=89.85  E-value=0.75  Score=34.77  Aligned_cols=46  Identities=24%  Similarity=0.305  Sum_probs=40.9

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ++++++.+.++++|...+.+++....|+-|. .++++|+++..|...
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~   48 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE-KNKVVGIVTSKDVAG   48 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECC-CCeEEEEecHHHHhc
Confidence            4678899999999999999999989999885 588999999999874

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK03705 glycogen debranching enzyme; Provisional

Probab=89.55  E-value=0.67  Score=48.26  Aligned_cols=54  Identities=20%  Similarity=0.362  Sum_probs=39.7

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCC--CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCe
Q 024154           22 PVRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE   79 (271)
Q Consensus        22 pVtF~-w~~~ak~V~V~GsF~nW~--~~ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVDG~   79 (271)
                      -|+|+ |...|++|.|+. |+++.  ..++|.+.+  .|+|++.+. +.+|. .|+|.|+|.
T Consensus        20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~G~-~Y~yrv~g~   77 (658)
T PRK03705         20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPARS--GDIWHGYLPGARPGL-RYGYRVHGP   77 (658)
T ss_pred             CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeecc--CCEEEEEECCCCCCC-EEEEEEccc
Confidence            46775 566799999997 66542  246887654  689999987 55664 599999884

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=89.36  E-value=0.59  Score=35.47  Aligned_cols=44  Identities=23%  Similarity=0.516  Sum_probs=36.2

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ..++++-+.++.+|+..|.+++  ..|+.|.. ++++|++|..|+++
T Consensus        72 ~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~-~~~~Gvit~~dil~  115 (116)
T cd04643          72 DVPVIIDDADIEEILHLLIDQP--FLPVVDDD-GIFIGIITRREILK  115 (116)
T ss_pred             CCceecCCCCHHHHHHHHhcCC--ceeEEeCC-CeEEEEEEHHHhhc
Confidence            4667788888999999999876  47888754 68999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=89.23  E-value=0.67  Score=43.24  Aligned_cols=53  Identities=13%  Similarity=0.258  Sum_probs=46.0

Q ss_pred             cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ++-|++..  .++.++.+.++.+|+..|.++++...|+-|  .++++||+|.+|+++
T Consensus       270 ~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~  322 (326)
T PRK10892        270 SIADVMTP--GGIRVRPGILAVDALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLR  322 (326)
T ss_pred             CHHHhcCC--CCEEECCCCCHHHHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHh
Confidence            46666643  688899999999999999999999999997  467999999999986

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=89.08  E-value=0.82  Score=34.98  Aligned_cols=47  Identities=17%  Similarity=0.397  Sum_probs=40.7

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCC--CCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~--~~~f~G~lt~tD~i~  212 (271)
                      +++++.-+.++.+|...|.++++..+|+-|..  .++++|+++..|.+.
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~   51 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDF   51 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhh
Confidence            46778889999999999999999999998863  588999999999764

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=89.07  E-value=0.55  Score=43.92  Aligned_cols=50  Identities=16%  Similarity=0.288  Sum_probs=42.1

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      +.+++.-+.++.+|+..|.+++...||+=|.. +.++|++|..|++..|.-
T Consensus       141 ~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~-G~viGiVTleDIle~ivG  190 (292)
T PRK15094        141 QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELIVG  190 (292)
T ss_pred             CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCC-CCEEEEeEHHHHHHHHhC
Confidence            34456667789999999999999999999854 569999999999997753

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=89.05  E-value=0.64  Score=34.83  Aligned_cols=45  Identities=24%  Similarity=0.474  Sum_probs=40.0

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i  211 (271)
                      +.++++.+.+++.|...|.+++....|+-|.. ++++|++|..|.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~   47 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDDD-GKLVGIVTNRDLR   47 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHee
Confidence            56788999999999999999999899988866 8999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=88.72  E-value=1.2  Score=33.61  Aligned_cols=47  Identities=17%  Similarity=0.332  Sum_probs=37.8

Q ss_pred             eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      +.++..+.++.+|...|.+++....++=+  .++++|++|..|+++.+.
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~G~v~~~dl~~~~~   49 (112)
T cd04625           3 IYTVAPETLLSEAVATMAEQDLGSLVVME--RGELVGLLTFREVLQAMA   49 (112)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCeEEEee--CCEEEEEEEHHHHHHHHH
Confidence            46678889999999999888876655544  389999999999987554

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=88.45  E-value=0.91  Score=42.37  Aligned_cols=58  Identities=12%  Similarity=0.257  Sum_probs=46.3

Q ss_pred             ccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       157 cYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      .=|+|-....++.++.+.++.+|+..|.++++..+|+=| +.++++|++|..|+.+++.
T Consensus       204 V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd-~~g~lvGivt~~Dl~~~~~  261 (326)
T PRK10892        204 VSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICD-DNMKIEGIFTDGDLRRVFD  261 (326)
T ss_pred             HHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEc-CCCcEEEEEecHHHHHHHh
Confidence            334444333788999999999999999999988878766 4578999999999887554

>PRK11573 hypothetical protein; Provisional

Probab=87.77  E-value=1.3  Score=43.42  Aligned_cols=63  Identities=16%  Similarity=0.211  Sum_probs=58.4

Q ss_pred             hhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       152 l~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      |...+.-|+|=.-.+++.+|.+.++.+++..+.+.|..--|+++....+++|++.+.|++..+
T Consensus       184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~  246 (413)
T PRK11573        184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLM  246 (413)
T ss_pred             cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHh
Confidence            577888999877789999999999999999999999999999999999999999999999754

>COG0517 FOG: CBS domain [General function prediction only]

Probab=87.48  E-value=1.6  Score=32.97  Aligned_cols=53  Identities=26%  Similarity=0.475  Sum_probs=46.2

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhcc
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGT  219 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~~  219 (271)
                      ..++...-+.++..|+..|.++++...|+=+..  +++|++|..|++..+.....
T Consensus         7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~--~l~Giit~~di~~~~~~~~~   59 (117)
T COG0517           7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDG--KLVGIITERDILRALAAGGK   59 (117)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCC--EEEEEEEHHHHHHHHhccCC
Confidence            567888889999999999999999888887765  89999999999998876654

>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type

Probab=87.45  E-value=2.2  Score=46.03  Aligned_cols=67  Identities=21%  Similarity=0.285  Sum_probs=45.6

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCC--CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc------Ce----eecCCCCC
Q 024154           22 PVRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD------GE----WRHDENQP   87 (271)
Q Consensus        22 pVtF~-w~~~ak~V~V~GsF~nW~--~~ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVD------G~----W~~Dp~~P   87 (271)
                      .++|+ |...|++|.|+...++|.  ..++|.+.+ ..|+|++.+. ...|. .|+|.|+      |+    .+.||...
T Consensus       136 gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~-~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~  213 (898)
T TIGR02103       136 GVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDS-TSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSV  213 (898)
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCCccceEeCccCC-CCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcc
Confidence            45664 667899999997666553  236898763 2699999986 44554 3666664      53    37888876


Q ss_pred             eee
Q 024154           88 HVS   90 (271)
Q Consensus        88 ~v~   90 (271)
                      .+.
T Consensus       214 als  216 (898)
T TIGR02103       214 SLS  216 (898)
T ss_pred             eEc
Confidence            654

Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=86.97  E-value=1.1  Score=45.14  Aligned_cols=60  Identities=15%  Similarity=0.225  Sum_probs=50.6

Q ss_pred             ccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       157 cYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      +-+++-...++++++.+.++.+|+..|.++++...|+=|.+ ++++||||..|+++.+.|-
T Consensus       165 V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~~~~p  224 (505)
T PLN02274        165 LSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRVKGYP  224 (505)
T ss_pred             HHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCc
Confidence            44445334458899999999999999999999999998865 5799999999999999873

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=86.48  E-value=1.3  Score=44.32  Aligned_cols=51  Identities=18%  Similarity=0.234  Sum_probs=45.2

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      ..+++++-+.++..|+..|.++++...|+-|.+ ++++|+||..|+++...+
T Consensus       154 ~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~~~~  204 (475)
T TIGR01303       154 TDLVTAPADTEPRKAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRATIY  204 (475)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhC
Confidence            468888999999999999999999999998854 579999999999987664

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=86.44  E-value=0.85  Score=34.52  Aligned_cols=42  Identities=26%  Similarity=0.434  Sum_probs=34.1

Q ss_pred             EcccchHHHHHHHHHHcC-----CCeeccccCCCCceeeeechHHHHH
Q 024154          170 LDVNLAVKQAFHVLYEQG-----LPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       170 ~D~~l~v~~Af~al~~~g-----~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      +..+.+++.|+..|.+++     +..+|+=|.. ++|+||+|..|+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~   48 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLL   48 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhc
Confidence            356778999999998887     4678888765 78999999999875

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=86.25  E-value=1  Score=45.46  Aligned_cols=58  Identities=17%  Similarity=0.280  Sum_probs=49.1

Q ss_pred             cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      +.-|+|-.+-++++++.+.++.+|+..|.++++...|+=|.+ ++++|+||..|++...
T Consensus       162 ~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        162 KVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSHK  219 (502)
T ss_pred             CHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhcc
Confidence            344555444579999999999999999999999999999854 5699999999999865

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=85.83  E-value=1.5  Score=33.35  Aligned_cols=55  Identities=11%  Similarity=0.212  Sum_probs=40.3

Q ss_pred             ccccccCCCCCCeEEEcccchHHHHHHHHHHcCCC---eeccccCCCCceeeeechHHHHH
Q 024154          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLP---MVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       155 ~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~---~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      .++=+++.  ...+.++-+.++..|+..|.+++..   .+++=|. .++++|++|..|+++
T Consensus        61 ~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~Gvvs~~di~~  118 (119)
T cd04598          61 KPVSEVMD--PDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-EGRYLGIGTVKDLLR  118 (119)
T ss_pred             CcHHHhcC--CCcEEecCCCCHHHHHHHHHcCCcccccccEEEee-CCeEEEEEEHHHHhc
Confidence            34445553  3577788888899999999998853   3344444 489999999999875

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=85.79  E-value=1.6  Score=43.99  Aligned_cols=60  Identities=20%  Similarity=0.386  Sum_probs=50.7

Q ss_pred             ccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       155 ~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      .++-|++  ..+++.+..+.++++|+..|.++++...|+-|.+ ++++|++|..|+...+..-
T Consensus        68 ~~V~dim--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~  127 (546)
T PRK14869         68 PQVRDLE--IDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDI  127 (546)
T ss_pred             CcHHHhc--CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhh
Confidence            4566655  2478999999999999999999999999999865 7899999999999866543

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=84.00  E-value=1.7  Score=43.52  Aligned_cols=51  Identities=20%  Similarity=0.341  Sum_probs=45.8

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      ..++++..+.++.+|+..|.++++..+|+-|.. +.++|++|..|++..+.+
T Consensus       156 ~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~~  206 (486)
T PRK05567        156 ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEEF  206 (486)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhhC
Confidence            467888999999999999999999999998865 689999999999998764

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=83.84  E-value=2.1  Score=43.00  Aligned_cols=51  Identities=24%  Similarity=0.332  Sum_probs=45.3

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      ..++.+..+.++.+|+..|.++++...|+=|.+ ++++|+||.+|+++.+.+
T Consensus       156 ~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~  206 (479)
T PRK07807        156 TDLVTLPAGTDPREAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIY  206 (479)
T ss_pred             CCceEECCCCcHHHHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhC
Confidence            468888999999999999999999999998875 489999999999987764

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=83.82  E-value=2.2  Score=43.26  Aligned_cols=51  Identities=12%  Similarity=0.156  Sum_probs=45.2

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCC-CceeeeechHHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK-GRFVGVLSALDFILILRE  216 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~-~~f~G~lt~tD~i~il~~  216 (271)
                      .++.++.+.++++|+..+.++++...|+=|.+. ++++|++|..|+++.++.
T Consensus       521 ~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        521 PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence            467889999999999999999999999988764 689999999999988764

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=83.78  E-value=1.4  Score=43.72  Aligned_cols=51  Identities=22%  Similarity=0.389  Sum_probs=45.8

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      .+++.+..+.++.+|+..|.++++..+|+-|.. +.++|++|..|+++.+.+
T Consensus       152 ~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~~~  202 (450)
T TIGR01302       152 EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRRKF  202 (450)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhcccC
Confidence            368889999999999999999999999999864 779999999999998754

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain

Probab=83.71  E-value=4.3  Score=31.58  Aligned_cols=56  Identities=18%  Similarity=0.191  Sum_probs=36.2

Q ss_pred             eEEEEEecC-CCceEEEEeccCC--CC-CCCCCCCCCCCC--CeEEEEEecCCceEEEEEEE
Q 024154           21 VPVRFIWPN-GGRRVSLSGSFTR--WS-EPMPMSPSEGCP--AVFQIICRLPPGHHQYKFYV   76 (271)
Q Consensus        21 vpVtF~w~~-~ak~V~V~GsF~n--W~-~~ipM~k~~~~~--g~f~~~~~LppG~yeYKFiV   76 (271)
                      +.++++-.. +.++|.|.-.-+.  +. ..++|.+.....  ..|++++.++.|.+.|.|.|
T Consensus        18 v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l   79 (116)
T cd02857          18 LHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL   79 (116)
T ss_pred             EEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence            444444433 4678888654442  22 246898764211  35899998877999999999

Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=82.01  E-value=2.9  Score=38.82  Aligned_cols=46  Identities=22%  Similarity=0.366  Sum_probs=41.4

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ..++++.+-++.+|+..|.++++...|+=|.+ ++++|++|..|+++
T Consensus       272 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~  317 (321)
T PRK11543        272 GGTTLQAQSRAIDAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQ  317 (321)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHh
Confidence            57788999999999999999999999998865 48999999999985

>PLN03244 alpha-amylase; Provisional

Probab=81.61  E-value=1.7  Score=46.36  Aligned_cols=55  Identities=25%  Similarity=0.472  Sum_probs=40.6

Q ss_pred             eEEEEEecCCCceEEEEeccCCCCCCC-C-----CCCCCCCCCeEEEEEe--cCCce-------EEEEEEEc
Q 024154           21 VPVRFIWPNGGRRVSLSGSFTRWSEPM-P-----MSPSEGCPAVFQIICR--LPPGH-------HQYKFYVD   77 (271)
Q Consensus        21 vpVtF~w~~~ak~V~V~GsF~nW~~~i-p-----M~k~~~~~g~f~~~~~--LppG~-------yeYKFiVD   77 (271)
                      .-.--.|..||.--+|+|+||||.++. .     |.+++  -|+|.+.++  |..|.       -||.|.-|
T Consensus       132 ~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (872)
T PLN03244        132 RVDFMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHDD--YGYWFIILEDKLREGEEPDELYFQQYNYVDD  201 (872)
T ss_pred             CceeEeecCCcceeeeeccccCCCccccccccccccccc--cceEEEEechhhhcCCCchhhhHhhhccccc
Confidence            334457999999999999999998863 2     44555  689999986  76652       36777654

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=81.57  E-value=3.1  Score=41.12  Aligned_cols=51  Identities=20%  Similarity=0.291  Sum_probs=44.6

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      ..+.+..+.++.+|+..+.++++.++|+=|.. +.++|++|..|+++.+..-
T Consensus       204 ~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~  254 (449)
T TIGR00400       204 SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSE  254 (449)
T ss_pred             CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhh
Confidence            35677888899999999999999999998865 5799999999999988763

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=81.16  E-value=3.2  Score=38.50  Aligned_cols=48  Identities=23%  Similarity=0.312  Sum_probs=42.1

Q ss_pred             eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      ++.+..+.++.+|...|.+++...+|+=|. .++++|++|..|+...+.
T Consensus       209 ~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-~g~~iG~vt~~dl~~~~~  256 (321)
T PRK11543        209 IPQVALTASVMDAMLELSRTGLGLVAVCDA-QQQVQGVFTDGDLRRWLV  256 (321)
T ss_pred             CcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEecHHHHHHHHh
Confidence            677888999999999999999999999884 478999999999987654

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=80.97  E-value=2.3  Score=41.54  Aligned_cols=67  Identities=24%  Similarity=0.408  Sum_probs=56.3

Q ss_pred             HHhhhhcccccc-CCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          149 SSFLSTHTVYEL-LPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       149 ~~fl~~~tcYd~-lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      ..+|+ ++|=|+ ++.-..++..+.+-+|..|+..|.++++.+.|+=|..... +|+++.+|.+++++.-
T Consensus       221 ~~~l~-~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~-v~~~s~~Dv~~l~~~~  288 (381)
T KOG1764|consen  221 PSLLS-KSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKK-VGNYSRFDVIHLAREG  288 (381)
T ss_pred             HHHhh-CCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCce-ecceehhhhhhhhhcC
Confidence            34443 444444 6766679999999999999999999999999999999888 9999999999988754

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=80.50  E-value=2.9  Score=42.39  Aligned_cols=63  Identities=25%  Similarity=0.279  Sum_probs=49.9

Q ss_pred             HhhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          150 SFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       150 ~fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      +.|..-+.-|++-.  +.++++.+.++++|...+.+++....|+-|. .++++|++|..|+++.+.
T Consensus       442 ~~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~-~g~lvGiVt~~dL~~~l~  504 (574)
T PRK01862        442 ERLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDD-DGRFRGAVALKDITSDLL  504 (574)
T ss_pred             hHHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcC-CCeEEEEEEHHHHHHHhh
Confidence            44555566665532  4567888899999999999999999999885 478999999999998654

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=80.17  E-value=3.6  Score=41.37  Aligned_cols=63  Identities=16%  Similarity=0.270  Sum_probs=52.2

Q ss_pred             hhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       151 fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      +-++..+-++|- +..+++++.+.++.+|...|.+++++..|+=|.+ ++++|++|..|+++...
T Consensus       242 l~~~~~V~~iM~-~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~~~~  304 (546)
T PRK14869        242 INQSIPVSYIMT-TEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLSPVR  304 (546)
T ss_pred             hhcCCCHHHhcc-CCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhcccc
Confidence            334555666664 2578999999999999999999999999999965 78999999999998554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	271
1z0m_A	96	The Glycogen-Binding Domain Of The Amp-Activated Pr		3e-14
1z0n_A	96	The Glycogen-Binding Domain Of The Amp-Activated Pr		8e-14
2v8q_E	330	Crystal Structure Of The Regulatory Fragment Of Mam		4e-13
2f15_A	96	Glycogen-Binding Domain Of The Amp-Activated Protei		9e-13
2qlv_B	252	Crystal Structure Of The Heterotrimer Core Of The S		3e-11
3t4n_C	323	Structure Of The Regulatory Fragment Of Saccharomyc		7e-10
2qlv_C	315	Crystal Structure Of The Heterotrimer Core Of The S		8e-10
2qr1_G	334	Crystal Structure Of The Adenylate Sensor From Amp-		7e-07
2oox_G	333	Crystal Structure Of The Adenylate Sensor From Amp-		7e-07
3nme_A	294	Structure Of A Plant Phosphatase Length = 294		3e-06

>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta1 Subunit Length = 96

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 22  PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
           P  F W  GG+ V LSGSF  WS+ +P++ S+     F  I  LP G HQYKF+VDG+W 
Sbjct: 12  PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSQNN---FVAILDLPEGEHQYKFFVDGQWT 67
Query: 82  HDENQPHVSGNYGVVNCVYIAVPQPDM 108
           HD ++P V+   G VN + I V + D 
Sbjct: 68  HDPSEPIVTSQLGTVNNI-IQVKKTDF 93

>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Length = 96

Iteration: 1
 Score = 73.9 bits (180), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 22  PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
           P  F W  GG+ V LSGSF  WS+ +P + S+     F  I  LP G HQYKF+VDG+W 
Sbjct: 12  PTVFRWTGGGKEVYLSGSFNNWSK-LPXTRSQNN---FVAILDLPEGEHQYKFFVDGQWT 67
Query: 82  HDENQPHVSGNYGVVNCVYIAVPQPDM 108
           HD ++P V+   G VN + I V + D 
Sbjct: 68  HDPSEPIVTSQLGTVNNI-IQVKKTDF 93

>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian Ampk In Complexes With Amp Length = 330

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 29  TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88
Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLK 247
           DFI IL       + +   ELE H I  W+   LQ + K
Sbjct: 89  DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK 126

>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta2 Subunit Length = 96

Iteration: 1
 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 22  PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
           P    W  GG+ V +SGSF  WS  +P+  S      F  I  LP G HQYKF+VDG+W 
Sbjct: 11  PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHND---FVAILDLPEGEHQYKFFVDGQWV 67
Query: 82  HDENQPHVSGNYGVVNCVYIAVPQPDM 108
           HD ++P V+   G +N + I V + D 
Sbjct: 68  HDPSEPVVTSQLGTINNL-IHVKKSDF 93

>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 252

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 9/130 (6%)
Query: 18  SILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD 77
           S++VPV   W  GG +V ++GSFT+W + + + P       F +  RL PG H+++F VD
Sbjct: 1   SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60
Query: 78  GEWRHDENQPHVSGNYG-VVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQY 136
            E R  +  P  +   G  VN  YI V QP+  P     E   + E D   MRP    + 
Sbjct: 61  NELRVSDFLPTATDQMGNFVN--YIEVRQPEKNPTN---EKIRSKEADS--MRPPTSDRS 113
Query: 137 SEADLQLSRD 146
           S A LQ+ +D
Sbjct: 114 SIA-LQIGKD 122

>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces Cerevisiae Ampk In Complex With Adp Length = 323

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 142 QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRF 201
           QL+ + I  FL++ T Y++LP S ++  LD +L VK++ +VL +  +   PLWD    RF
Sbjct: 17  QLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRF 76
Query: 202 VGVLSALDFILILRELGTN 220
            G+L+  DFI +++   +N
Sbjct: 77  AGLLTTTDFINVIQYYFSN 95

>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 315

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 142 QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRF 201
           QL+ + I  FL++ T Y++LP S ++  LD +L VK++ +VL +  +   PLWD    RF
Sbjct: 10  QLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRF 69
Query: 202 VGVLSALDFILILRELGTN 220
            G+L+  DFI +++   +N
Sbjct: 70  AGLLTTTDFINVIQYYFSN 88

>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-Activated Protein Kinase In Complex With Adp Length = 334

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 207
           I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD    +F G+L+ 
Sbjct: 15  IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 74
Query: 208 LDFILILR 215
            DF+ +++
Sbjct: 75  ADFVNVIK 82

>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-activated Protein Kinase Complexed With Amp Length = 333

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 207
           I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD    +F G+L+ 
Sbjct: 14  IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 73
Query: 208 LDFILILR 215
            DF+ +++
Sbjct: 74  ADFVNVIK 81

>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase Length = 294

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 29  NGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEWRHDENQP 87
            G  RV +SG    W + +P++  +G    F I+ R LP G  +YK+ +DGEW H+E +P
Sbjct: 179 KGFSRVEISGLDIGWGQRIPLTLGKGTG--FWILKRELPEGQFEYKYIIDGEWTHNEAEP 236
Query: 88  HVSGNY-GVVNCVYIAVPQPDMVPNTISPETS 118
            +  N  G  N     V  P  V  T     S
Sbjct: 237 FIGPNKDGHTNNYAKVVDDPTSVDGTTRERLS 268

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	271
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	3e-29
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	7e-26
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	5e-25
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	5e-25
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	9e-22
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	1e-21
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	8e-12
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-04

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Length = 252

 Score =  110 bits (274), Expect = 3e-29
 Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 1/139 (0%)

Query: 18  SILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD 77
           S++VPV   W  GG +V ++GSFT+W + + + P       F +  RL PG H+++F VD
Sbjct: 1   SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60

Query: 78  GEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYS 137
            E R  +  P  +   G     YI V QP+  P      +     +          A   
Sbjct: 61  NELRVSDFLPTATDQMGNFVN-YIEVRQPEKNPTNEKIRSKEADSMRPPTSDRSSIALQI 119

Query: 138 EADLQLSRDRISSFLSTHT 156
             D     D  + F    +
Sbjct: 120 GKDPDDFGDGYTRFHEDLS 138

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Length = 294

 Score =  102 bits (255), Expect = 7e-26
 Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 18/137 (13%)

Query: 25  FIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDE 84
            +   G  RV +SG    W + +P++  +G    + +   LP G  +YK+ +DGEW H+E
Sbjct: 175 TLKDKGFSRVEISGLDIGWGQRIPLTLGKG-TGFWILKRELPEGQFEYKYIIDGEWTHNE 233

Query: 85  NQPHVSGN-YGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQL 143
            +P +  N  G  N  Y  V      P ++   T   +  +D  +  E            
Sbjct: 234 AEPFIGPNKDGHTN-NYAKVVDD---PTSVDGTTRERLSSEDPELLEE------------ 277

Query: 144 SRDRISSFLSTHTVYEL 160
            R ++  FL T +  E+
Sbjct: 278 ERSKLIQFLETCSEAEV 294

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Length = 96

 Score = 94.6 bits (235), Expect = 5e-25
 Identities = 41/98 (41%), Positives = 54/98 (55%), Gaps = 5/98 (5%)

Query: 11  ENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHH 70
           E +    +   P  F W  GG+ V LSGSF  WS  +PM+ S+     F  I  LP G H
Sbjct: 1   EVNEKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRSQN---NFVAILDLPEGEH 56

Query: 71  QYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDM 108
           QYKF+VDG+W HD ++P V+   G VN + I V + D 
Sbjct: 57  QYKFFVDGQWTHDPSEPIVTSQLGTVNNI-IQVKKTDF 93

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score =  100 bits (251), Expect = 5e-25
 Identities = 24/108 (22%), Positives = 52/108 (48%), Gaps = 1/108 (0%)

Query: 138 EADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF 197
           +   + +   I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD  
Sbjct: 5   QETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE 64

Query: 198 KGRFVGVLSALDFILILRELGTNGSNLTE-EELETHTISAWKVGKLQL 244
             +F G+L+  DF+ +++    + S      E++   +   +  + ++
Sbjct: 65  ANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKI 112

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 91.6 bits (227), Expect = 9e-22
 Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 2/127 (1%)

Query: 130 PEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLP 189
            +   +    + QL+ + I  FL++ T Y++LP S ++  LD +L VK++ +VL +  + 
Sbjct: 5   TQDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIV 64

Query: 190 MVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQ 249
             PLWD    RF G+L+  DFI +++   +N      E ++   +   K  +  L + + 
Sbjct: 65  SAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKF--ELVDKLQLDGLKDIERALGVDQL 122

Query: 250 MDGNGRP 256
              +  P
Sbjct: 123 DTASIHP 129

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 91.2 bits (226), Expect = 1e-21
 Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 3/117 (2%)

Query: 128 MRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQG 187
             PE   ++S+   + +    ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G
Sbjct: 10  PAPEN--EHSQETPESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNG 67

Query: 188 LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244
           +   PLWD  K  FVG+L+  DFI IL     + + +   ELE H I  W+   LQ 
Sbjct: 68  VRAAPLWDSKKQSFVGMLTITDFINILHRYYKS-ALVQIYELEEHKIETWREVYLQD 123

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696

 Score = 64.0 bits (156), Expect = 8e-12
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 12 NSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICRLPPGHH 70
            G  G  +V     WP   + + L G FT      + +   E       +  +L PG +
Sbjct: 11 GKGRKGRYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRKIEE---QGIVYLKLWPGEY 67

Query: 71 QYKFYVDGEWR 81
           Y F +D ++ 
Sbjct: 68 GYGFQIDNDFE 78

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 9/79 (11%), Positives = 30/79 (37%)

Query: 164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN 223
           + K+  +     +++A   + E     +P+ +    + VG+++++D +  +         
Sbjct: 11  NKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLI 70

Query: 224 LTEEELETHTISAWKVGKL 242
             + E          V ++
Sbjct: 71  REKHERNFLAAINEPVREI 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	271
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	99.91
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	99.89
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	99.87
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.7
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	99.58
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.25
4aef_A	645	Neopullulanase (alpha-amylase II); hydrolase, ther	99.16
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.09
2z0b_A	131	GDE5, KIAA1434, putative glycerophosphodiester pho	98.43
3c8d_A	403	Enterochelin esterase; alpha-beta-alpha sandwich,	98.3
1ac0_A	108	Glucoamylase; hydrolase, starch binding domain; HE	97.84
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	97.82
1m7x_A	617	1,4-alpha-glucan branching enzyme; alpha/beta barr	97.64
4esy_A	170	CBS domain containing membrane protein; structural	97.61
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	97.6
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	97.49
3k1d_A	722	1,4-alpha-glucan-branching enzyme; mycobacterium t	97.31
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	97.12
3fio_A	70	A cystathionine beta-synthase domain protein fused	97.09
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	96.96
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	96.95
3ddj_A	296	CBS domain-containing protein; structural genomics	96.92
3ocm_A	173	Putative membrane protein; structural genomics, PS	96.7
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	96.61
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	96.6
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	96.6
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	96.58
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	96.56
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	96.53
2vr5_A	718	Glycogen operon protein GLGX; hydrolase, glycosida	96.48
1bf2_A	750	Isoamylase; hydrolase, glycosidase, debranching en	96.45
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	96.44
3oco_A	153	Hemolysin-like protein containing CBS domains; str	96.44
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	96.41
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	96.4
3vgf_A	558	Malto-oligosyltrehalose trehalohydrolase; alpha/be	96.37
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	96.37
2laa_A	104	Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Pa	96.35
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	96.31
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	96.29
2bhu_A	602	Maltooligosyltrehalose trehalohydrolase; alpha-amy	96.29
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	96.23
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	96.21
1pbj_A	125	Hypothetical protein; structural genomics, domain,	96.17
3oco_A	153	Hemolysin-like protein containing CBS domains; str	96.16
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	96.15
1wzl_A	585	Alpha-amylase II; pullulan, GH-13, alpha-amylase f	96.14
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	96.13
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	96.12
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	96.06
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	96.06
1qho_A	686	Alpha-amylase; glycoside hydrolase, starch degrada	96.03
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	96.01
1pbj_A	125	Hypothetical protein; structural genomics, domain,	96.01
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	95.97
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	95.97
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	95.97
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	95.96
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	95.96
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	95.95
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	95.95
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	95.92
2wsk_A	657	Glycogen debranching enzyme; carbohydrate metaboli	95.91
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	95.87
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	95.86
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	95.83
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	95.81
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	95.75
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	95.74
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	95.73
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	95.73
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	95.72
3bmv_A	683	Cyclomaltodextrin glucanotransferase; glycosidase,	95.69
1j0h_A	588	Neopullulanase; beta-alpha-barrels, hydrolase; 1.9	95.68
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	95.66
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	95.64
4fry_A	157	Putative signal-transduction protein with CBS DOM;	95.63
2vn4_A	599	Glucoamylase; hydrolase, carbohydrate binding, gly	95.63
4fry_A	157	Putative signal-transduction protein with CBS DOM;	95.6
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	95.58
1cyg_A	680	Cyclodextrin glucanotransferase; glycosyltransfera	95.55
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	95.55
2e8y_A	718	AMYX protein, pullulanase; multiple domain, beta-a	95.53
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	95.49
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	95.47
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	95.46
1d3c_A	686	Cyclodextrin glycosyltransferase; alpha-amylase, p	95.43
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	95.43
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	95.42
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	95.4
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	95.39
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	95.32
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	95.26
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	95.25
3ocm_A	173	Putative membrane protein; structural genomics, PS	95.25
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	95.24
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	95.2
4esy_A	170	CBS domain containing membrane protein; structural	95.19
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	95.06
2fhf_A	1083	Pullulanase; multiple domain, beta-alpha-barrel, a	95.05
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	94.95
2ya0_A	714	Putative alkaline amylopullulanase; hydrolase, gly	94.77
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	94.75
4aio_A	884	Limit dextrinase; hydrolase, pullulanase, glycosid	94.75
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	94.75
1vr9_A	213	CBS domain protein/ACT domain protein; structural	94.74
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	94.64
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	94.61
1vem_A	516	Beta-amylase; beta-alpha-barrels, optimum PH, hydr	94.6
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	94.57
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	94.34
1pvm_A	184	Conserved hypothetical protein TA0289; structural	94.26
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	94.15
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	94.09
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	94.01
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	93.93
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	93.9
2oux_A	286	Magnesium transporter; 10001B, structural genomics	93.73
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	93.71
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	93.7
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	93.7
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	93.67
1pvm_A	184	Conserved hypothetical protein TA0289; structural	93.66
1ji1_A	637	Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6	93.52
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	93.48
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	93.34
3ddj_A	296	CBS domain-containing protein; structural genomics	93.25
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	93.13
3faw_A	877	Reticulocyte binding protein; TIM barrel, beta bar	92.96
3m07_A	618	Putative alpha amylase; IDP00968, csgid, structura	92.88
1ea9_C	583	Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A	92.81
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	92.42
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	92.27
1gcy_A	527	Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b	92.21
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	91.13
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	90.59
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	90.26
1vr9_A	213	CBS domain protein/ACT domain protein; structural	89.74
2ya1_A	1014	Putative alkaline amylopullulanase; hydrolase, gly	89.64
4fch_A	221	Outer membrane protein SUSE; starch binding, extra	87.91
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	87.77
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	87.46
2c3v_A	102	Alpha-amylase G-6; carbohydrate-binding module, st	87.1
2oux_A	286	Magnesium transporter; 10001B, structural genomics	85.88
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	85.55
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	85.34
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	85.33
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	84.41
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	83.96
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	82.08
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	81.09
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	80.26

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A

Probab=99.91  E-value=2.8e-24  Score=168.21  Aligned_cols=82  Identities=45%  Similarity=0.872  Sum_probs=75.8

Q ss_pred             CCcceEEEEEecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeeecCCCCCeeeCCCCcc
Q 024154           17 GSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVV   96 (271)
Q Consensus        17 ~~~~vpVtF~w~~~ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~LppG~yeYKFiVDG~W~~Dp~~P~v~d~~G~~   96 (271)
                      .+.+++|+|+|..+|++|+|+|+||+|+ .++|.+.   .|.|++++.|++|.|+|||+|||+|++||.+|++.|+.|+.
T Consensus         7 ~~~~~~v~F~wap~a~~V~v~GdFn~W~-~~~m~~~---~g~w~~~v~l~~G~~~YKf~VdG~~~~DP~~~~~~d~~G~~   82 (96)
T 1z0n_A            7 PAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRS---QNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTV   82 (96)
T ss_dssp             ---CEEEEEEECSCCSCEEEEEGGGTTC-CEECEEE---TTEEEEEEEECSEEEEEEEEETTEEECCTTSCEEECTTSCE
T ss_pred             CCCceEEEEEECCCCcEEEEEEEeCCCc-cccCEEC---CCEEEEEEEccCCCEEEEEEECCeEEcCCCCCeEECCCCCE
Confidence            4567999999999999999999999999 7899984   47999999999999999999999999999999999999999


Q ss_pred             ccEEEe
Q 024154           97 NCVYIA  102 (271)
Q Consensus        97 NNvl~V  102 (271)
                      ||+|.|
T Consensus        83 Nnvi~V   88 (96)
T 1z0n_A           83 NNIIQV   88 (96)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            999999

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1

Probab=99.89  E-value=1.3e-23  Score=190.41  Aligned_cols=88  Identities=32%  Similarity=0.663  Sum_probs=80.4

Q ss_pred             cceEEEEEecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeeecCCCCCeeeCCCCcccc
Q 024154           19 ILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNC   98 (271)
Q Consensus        19 ~~vpVtF~w~~~ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~LppG~yeYKFiVDG~W~~Dp~~P~v~d~~G~~NN   98 (271)
                      .++||+|+|.++|++|+|+|+|++|++.++|.|.++.+|.|++++.|+||.|+|||+|||+|++|+.+|++.|+.|+.||
T Consensus         2 ~~vpv~f~W~~~a~~V~V~GsF~~W~~~~~m~k~~~~~G~f~~tv~LppG~y~YKFiVDG~w~~Dp~~p~~~d~~G~~nN   81 (252)
T 2qlv_B            2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVN   81 (252)
T ss_dssp             CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEE
T ss_pred             CcEEEEEEEeCCCcEEEEEEEeCCCcCcccceeccCCCCcEEEEEECCCCEEEEEEEECCEEEeCCCCCEEecCCCcCcc
Confidence            46899999999999999999999999878999854457899999999999999999999999999999999999999999


Q ss_pred             EEEecCCCC
Q 024154           99 VYIAVPQPD  107 (271)
Q Consensus        99 vl~V~~~~~  107 (271)
                      +|+| .+++
T Consensus        82 vi~V-~~~~   89 (252)
T 2qlv_B           82 YIEV-RQPE   89 (252)
T ss_dssp             EEEE-CC--
T ss_pred             eeec-cCcc
Confidence            9999 5443

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}

Probab=99.87  E-value=1.6e-22  Score=186.18  Aligned_cols=84  Identities=27%  Similarity=0.553  Sum_probs=78.1

Q ss_pred             CcceEEEEEecC-CCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeeecCCCCCee-eCCCCc
Q 024154           18 SILVPVRFIWPN-GGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHV-SGNYGV   95 (271)
Q Consensus        18 ~~~vpVtF~w~~-~ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~LppG~yeYKFiVDG~W~~Dp~~P~v-~d~~G~   95 (271)
                      ...++|+|+|.+ +|++|+|+|||+||+..+||+|+++ +|.|++++.||||.|+|||+|||+|++||++|.+ .|+.|+
T Consensus       167 ~~k~~v~f~~~~~~~~~V~v~GsF~~W~~~~~l~k~~~-~g~~~~~~~L~~G~y~YkFiVDG~w~~d~~~~~~~~d~~G~  245 (294)
T 3nme_A          167 LKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLGKG-TGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGH  245 (294)
T ss_dssp             CCCEEEEEEEECSSCSCEEEEETTTEEEEEEECEECTT-TCEEEEEEEECSEEEEEEEEETTEEECCTTSCEECSCTTSC
T ss_pred             cccccceeeeccCCCCEEEEEEeccCCCCcccceEcCC-CCEEEEEEECCCceEEEEEEECCEEeeCCCCCeeeECCCCC
Confidence            457899999998 7899999999999997799999753 6899999999999999999999999999999986 789999


Q ss_pred             cccEEEe
Q 024154           96 VNCVYIA  102 (271)
Q Consensus        96 ~NNvl~V  102 (271)
                      +||+|.|
T Consensus       246 ~nn~~~v  252 (294)
T 3nme_A          246 TNNYAKV  252 (294)
T ss_dssp             CEEEEEE
T ss_pred             EeEEEEE
Confidence            9999999

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.70  E-value=1.7e-17  Score=150.04  Aligned_cols=122  Identities=27%  Similarity=0.397  Sum_probs=105.1

Q ss_pred             cHHHHHHhHHHHHHhhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          137 SEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       137 s~~~~~~~~~~~~~fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      .+.+..+..+.+.+||+.++|||+||.+.+++++|.+.++++|+.+|.++|++++|+||.+.++|+|+||..|++.++++
T Consensus        12 ~~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~   91 (323)
T 3t4n_C           12 VSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQY   91 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHH
Confidence            35566678899999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hccCCCCcchhhhhccchhHHHHHHHhhhhcccCCCCCCCCCCCceEecCCCCC
Q 024154          217 LGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQVSASSVS  270 (271)
Q Consensus       217 ~~~~~~~~~~~~le~~~I~~~re~~~~~~~~~~~~~~~~~~~~plv~i~p~~~l  270 (271)
                      ++..  +...+.+++++...|+++.+...          ...++++++.|+.++
T Consensus        92 ~~~~--~~~~~~l~~~~~~~v~~i~~~~~----------~~~~~~v~v~~~~~l  133 (323)
T 3t4n_C           92 YFSN--PDKFELVDKLQLDGLKDIERALG----------VDQLDTASIHPSRPL  133 (323)
T ss_dssp             HHHC--GGGGGGGGGCBHHHHHHHHHHTT----------C----CCCBCTTSBH
T ss_pred             HHcC--cchhHHHHHHHHHHHHHHHHHhC----------CCCCCceEeCCCCcH
Confidence            8875  34567889999999999877643          346888999998875

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}

Probab=99.58  E-value=1.6e-15  Score=153.40  Aligned_cols=85  Identities=18%  Similarity=0.149  Sum_probs=72.0

Q ss_pred             CCCCCCcceEEEEEecC--CCceEEEEeccCCCCC-CCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeee--cCCCCC
Q 024154           13 SGVVGSILVPVRFIWPN--GGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR--HDENQP   87 (271)
Q Consensus        13 ~~~~~~~~vpVtF~w~~--~ak~V~V~GsF~nW~~-~ipM~k~~~~~g~f~~~~~LppG~yeYKFiVDG~W~--~Dp~~P   87 (271)
                      .+.+....++|+|+++.  +|++|+|+||||+|++ ..+|.+.   +|.|++++.||||.|+|||+|||+|+  +||++|
T Consensus        10 ~~~~~~~~~~v~f~~~~~~~~~~v~~~G~Fn~w~~~~~~~~~~---~~~~~~~~~L~~g~~~y~f~vdg~~~~~~d~~~~   86 (696)
T 4aee_A           10 YGKGRKGRYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRKI---EEQGIVYLKLWPGEYGYGFQIDNDFENVLDPDNE   86 (696)
T ss_dssp             ETTTEEEEEEEEEEEECCTTCSCEEEEETTSCSSTTSCBCEEE---TTEEEEEEEECSEEEEEEEEETTCCSCCCCTTCC
T ss_pred             cCCCCCCcEEEEEEEECCCCCcEEEEEEecCCCCCCCcceEec---CCeEEEEEEcCCceEEEEEEECCEEeecCCCCCC
Confidence            33445567888888876  7999999999999976 3688775   68999999999999999999999999  888887


Q ss_pred             e---eeCCCCccccEE
Q 024154           88 H---VSGNYGVVNCVY  100 (271)
Q Consensus        88 ~---v~d~~G~~NNvl  100 (271)
                      .   +.|++|..|++.
T Consensus        87 ~~~y~~~~~g~~n~~~  102 (696)
T 4aee_A           87 EKKCVHTSFFPEYKKC  102 (696)
T ss_dssp             CEEEEECSSCTTSEEE
T ss_pred             cccccccCCcccccee
Confidence            4   568999999885

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.25  E-value=2.2e-11  Score=110.30  Aligned_cols=122  Identities=20%  Similarity=0.364  Sum_probs=100.4

Q ss_pred             HHHHHhHHHHHHhhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhc
Q 024154          139 ADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG  218 (271)
Q Consensus       139 ~~~~~~~~~~~~fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~  218 (271)
                      .+.....+.+.+||..++|+|+|+.+.++++++.+.++.+|+..|.++|+.++|+||...++++||+|..|++.++..++
T Consensus         6 ~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~   85 (334)
T 2qrd_G            6 ETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYY   85 (334)
T ss_dssp             HHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHh
Confidence            44556778999999999999999999999999999999999999999999999999999999999999999999887775


Q ss_pred             cCC-CCcchhhhhccchhHHHHHHHhhhhcccCCCCCCCCCCCceEecCCCCC
Q 024154          219 TNG-SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQVSASSVS  270 (271)
Q Consensus       219 ~~~-~~~~~~~le~~~I~~~re~~~~~~~~~~~~~~~~~~~~plv~i~p~~~l  270 (271)
                      ... .+...+.++..+++.|++....+.          ..+...+.+.|+.++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~i~~~l~~im----------~~~~~~~~v~~~~~~  128 (334)
T 2qrd_G           86 QSSSFPEAIAEIDKFRLLGLREVERKIG----------AIPPETIYVHPMHSL  128 (334)
T ss_dssp             HHCSCGGGGGGGGSCBHHHHHHHHHHHT----------CSCSSCCCBCTTSBH
T ss_pred             hccCCccHHHHHhhhchhhHHHHHHhhc----------cCCCceeeeCCCCcH
Confidence            421 122346777889999999876653          223334778887664

>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}

Probab=99.16  E-value=5.4e-11  Score=119.09  Aligned_cols=67  Identities=27%  Similarity=0.474  Sum_probs=59.7

Q ss_pred             ceEEEEEecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeeecCCCCCee
Q 024154           20 LVPVRFIWPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHV   89 (271)
Q Consensus        20 ~vpVtF~w~~~ak~V~V~GsF~nW~~~-ipM~k~~~~~g~f~~~~~LppG~yeYKFiVDG~W~~Dp~~P~v   89 (271)
                      ...|.|.++.+|+.|+|+|+||+|.+. .+|++.   ++.|.+++.||||.|+|||+|||+|..||.+|..
T Consensus        16 ~~~~~~~~~~~~~~~yl~G~Fn~w~~~~~~m~~~---g~~~~~~v~L~~G~y~Y~f~vdg~~~~dp~n~~~   83 (645)
T 4aef_A           16 VAEVEFSLIREGSYAYLLGDFNAFNEGSFRMEQE---GKNWKIKIALPEGVWHYAFSIDGKFVLDPDNPER   83 (645)
T ss_dssp             EEEEEEEEECCSSCEEEEETTTTTCTTSSEEEEC---SSEEEEEEEECSEEEEEEEEETTEEECCTTCCCE
T ss_pred             EEEEEEecCCCCeEEEEEEcCCCCCCCcccceEc---CCEEEEEEEeCCceEEEEEEECCeEecCCCCCCc
Confidence            467889999999999999999999874 577763   5799999999999999999999999999999854

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.09  E-value=5.8e-11  Score=107.47  Aligned_cols=115  Identities=36%  Similarity=0.591  Sum_probs=95.1

Q ss_pred             HhHHHHHHhhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhccCCC
Q 024154          143 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS  222 (271)
Q Consensus       143 ~~~~~~~~fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~~~~~  222 (271)
                      .+.+.|+.||+..+|+|+|+.+.+++.++.+.++.+|+..|.+++++++|+||...++++|++|..|++..|...+.. .
T Consensus        23 ~~~~~~~~~l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~-~  101 (330)
T 2v8q_E           23 SNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKS-A  101 (330)
T ss_dssp             CCSCHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHH-H
T ss_pred             hhhHHHHHHHHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhc-c
Confidence            356789999999999999999999999999999999999999999999999999989999999999999988765532 1


Q ss_pred             CcchhhhhccchhHHHHHHHhhhhcccCCCCCCCCCCCceEecCCCCC
Q 024154          223 NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQVSASSVS  270 (271)
Q Consensus       223 ~~~~~~le~~~I~~~re~~~~~~~~~~~~~~~~~~~~plv~i~p~~~l  270 (271)
                      .....+++.++++.|++....+            -.++.+++.|+.++
T Consensus       102 ~~~~~~l~~~~~~~~~~~~~~i------------m~~~~~~v~~~~~~  137 (330)
T 2v8q_E          102 LVQIYELEEHKIETWREVYLQD------------SFKPLVCISPNASL  137 (330)
T ss_dssp             TTTCCCGGGCBHHHHHHHHSSS------------SCCCCCCBCTTSBH
T ss_pred             ccchhHHhhccHHHHHHHHhhc------------ccCCceEeCCCCCH
Confidence            1234667788888888755442            24667778887664

>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}

Probab=98.43  E-value=4.6e-07  Score=74.02  Aligned_cols=58  Identities=21%  Similarity=0.437  Sum_probs=48.0

Q ss_pred             cceEEEEEecC---CCceEEEEec---cCCCCC--CCCCCCCC--CCCCeEEEEEecCCc-eEEEEEEE
Q 024154           19 ILVPVRFIWPN---GGRRVSLSGS---FTRWSE--PMPMSPSE--GCPAVFQIICRLPPG-HHQYKFYV   76 (271)
Q Consensus        19 ~~vpVtF~w~~---~ak~V~V~Gs---F~nW~~--~ipM~k~~--~~~g~f~~~~~LppG-~yeYKFiV   76 (271)
                      ..+.|+|+...   .++.|+|+|+   +-+|++  .++|.+.+  .....|++++.||+| .+||||++
T Consensus         7 ~~v~V~F~v~~~~~~ge~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi   75 (131)
T 2z0b_A            7 GPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRYFK   75 (131)
T ss_dssp             CCEEEEEEEECCCCTTCEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTTCCEEEEEEE
T ss_pred             CeEEEEEEEeeecCCCCEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCCCcEEEEEEE
Confidence            45889999976   4789999999   889987  36898762  126899999999988 59999999

>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*

Probab=98.30  E-value=1.9e-06  Score=81.32  Aligned_cols=83  Identities=22%  Similarity=0.292  Sum_probs=64.6

Q ss_pred             ceEEEEEecCC-C-------ceEEEE--eccC---CCCCCCCCCCCCCCCCeEEEEEecCCceE-EEEEEEc--------
Q 024154           20 LVPVRFIWPNG-G-------RRVSLS--GSFT---RWSEPMPMSPSEGCPAVFQIICRLPPGHH-QYKFYVD--------   77 (271)
Q Consensus        20 ~vpVtF~w~~~-a-------k~V~V~--GsF~---nW~~~ipM~k~~~~~g~f~~~~~LppG~y-eYKFiVD--------   77 (271)
                      ...|||.|.+. |       ++|+|.  |..+   +|. ..+|+|..+ +|+|+.++.|+++.| .|+|+||        
T Consensus        30 ~~~vtF~~~~p~a~~~~~~~~~V~~~~~~~~d~~~~~~-~~~m~r~~~-~~~W~~t~~l~~~~~~~Y~~~~~~~~~~~~~  107 (403)
T 3c8d_A           30 MFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQ-PQSMQRIAG-TDVWQWTTQLNANWRGSYCFIPTERDDIFSA  107 (403)
T ss_dssp             EEEEEEEEECTTCSTTTCCCCEEEEEETTTC--------CCBCEECTT-SSEEEEEEEEETTCEEEEEEEEESCCSTTCC
T ss_pred             cEEEEEEeeCCCcccccCccceEEEECcCCCccccccC-ccccccCCC-CCeEEEEEEECCCcEEEEEEEecCccccccc
Confidence            46899999864 5       789998  3222   222 257998543 899999999999999 9999999        


Q ss_pred             ----------------CeeecCCCCCeeeCC-CCccccEEEecC
Q 024154           78 ----------------GEWRHDENQPHVSGN-YGVVNCVYIAVP  104 (271)
Q Consensus        78 ----------------G~W~~Dp~~P~v~d~-~G~~NNvl~V~~  104 (271)
                                      |..+.||.+|....+ .|...|+++++.
T Consensus       108 ~~~~~~~~r~~w~~~~~~~~~DP~n~~~~~~~~~~~~s~~~~p~  151 (403)
T 3c8d_A          108 PSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEMPQ  151 (403)
T ss_dssp             C--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEECTT
T ss_pred             ccchHHHHHHHHHHhhcccccCCCCCCCCCCCCCcccccccCCC
Confidence                            778899999987644 488899999954

>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A

Probab=97.84  E-value=1.2e-05  Score=63.09  Aligned_cols=59  Identities=25%  Similarity=0.461  Sum_probs=46.8

Q ss_pred             cceEEEEEecC---CCceEEEEeccC---CCCC--CCCCCCCCC--CCCeEEEEEecCCc-eEEEEEEEc
Q 024154           19 ILVPVRFIWPN---GGRRVSLSGSFT---RWSE--PMPMSPSEG--CPAVFQIICRLPPG-HHQYKFYVD   77 (271)
Q Consensus        19 ~~vpVtF~w~~---~ak~V~V~GsF~---nW~~--~ipM~k~~~--~~g~f~~~~~LppG-~yeYKFiVD   77 (271)
                      ..+.|+|...+   .+++|+|+|+..   +|++  .++|.+...  .++.|++++.||+| .++|||+|.
T Consensus         5 ~~v~V~F~v~~~t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~v~   74 (108)
T 1ac0_A            5 TAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIRI   74 (108)
T ss_dssp             CCCCEEEEEECCCCSSCCEECCCSSSTTCSSSGGGSCCBBCSSSSSSCSSCEEEECCCSSSCEECCCEEC
T ss_pred             CeEEEEEEEeeECCCCCEEEEEeCcHHHCCCCHHHCccccccccCCcCCeEEEEEEeCCCCeEEEEEEEE
Confidence            45788999876   378999999864   8986  468987521  25789999999998 499999993

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=97.82  E-value=6.4e-06  Score=71.58  Aligned_cols=57  Identities=12%  Similarity=0.344  Sum_probs=50.8

Q ss_pred             ccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          159 ELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       159 d~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      +.+... +++.++.+.++++|+..|.++++.++|++|.+.++++|++|..|++..+..
T Consensus         7 ~~i~~~-~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~   63 (280)
T 3kh5_A            7 KIAQNK-KIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGG   63 (280)
T ss_dssp             GTSCCS-CCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTT
T ss_pred             HHhcCC-CcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcc
Confidence            444444 899999999999999999999999999999988999999999999987643

>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*

Probab=97.64  E-value=0.00017  Score=71.85  Aligned_cols=68  Identities=25%  Similarity=0.541  Sum_probs=53.0

Q ss_pred             eEEEEE-ecCCCceEEEEeccCCCCC-CCCCCCCCCCCCeEEEEEe-cCCceEEEEEEE---cCee--ecCCCCCeee
Q 024154           21 VPVRFI-WPNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYV---DGEW--RHDENQPHVS   90 (271)
Q Consensus        21 vpVtF~-w~~~ak~V~V~GsF~nW~~-~ipM~k~~~~~g~f~~~~~-LppG~yeYKFiV---DG~W--~~Dp~~P~v~   90 (271)
                      ..|+|+ |...|++|.|+|+|++|.. .++|.+.. ..|+|++++. +.+|. .|+|.|   ||.+  +.||....+.
T Consensus        25 ~gv~F~vwAP~A~~V~L~gdfn~~~~~~~~M~~~~-~~GvW~~~v~~~~~g~-~Y~f~i~~~~g~~~~~~DPya~~~~  100 (617)
T 1m7x_A           25 TGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRK-ESGIWELFIPGAHNGQ-LYKYEMIDANGNLRLKSDPYAFEAQ  100 (617)
T ss_dssp             EEEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCCT-TTTEEEEEEETCCTTC-EEEEEEECTTSCEEEECCTTCSSEE
T ss_pred             CcEEEEEECCCCCEEEEEEEeCCCCCceeEeEECC-CCCEEEEEEcCCCCCC-EEEEEEEcCCCcEEEecCccceeec
Confidence            467886 6678999999999999975 47998732 3699999987 67787 499998   6764  6788776655

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=97.61  E-value=6.7e-05  Score=61.48  Aligned_cols=69  Identities=17%  Similarity=0.345  Sum_probs=60.6

Q ss_pred             HhHHHHHHhhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          143 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       143 ~~~~~~~~fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      ..+..+...|+.-++-|+|  +.+++.+..+.++.+|+..|.++++.++|+.|. .++++|++|..|++..+
T Consensus         6 ~~~~~~~~~l~~~~V~diM--~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dll~~~   74 (170)
T 4esy_A            6 ARRRAIARAIRQVPIRDIL--TSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ-NGHLVGIITESDFLRGS   74 (170)
T ss_dssp             HHHHHHHHHHHTSBGGGGC--CSCCCCEETTSBHHHHHHHHHHTTCSEEEEECT-TSCEEEEEEGGGGGGGT
T ss_pred             HHHHHHHHHHcCCCHHHhc--CCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcC-CccEEEEEEHHHHHHHH
Confidence            3456788889999999999  568999999999999999999999999999996 48899999999997543

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A

Probab=97.60  E-value=0.00017  Score=73.94  Aligned_cols=65  Identities=18%  Similarity=0.407  Sum_probs=50.2

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCC-CCCCCCCCCCCCeEEEEEe-------cCCceEEEEEEEcC---ee--ecCCCCC
Q 024154           22 PVRFI-WPNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICR-------LPPGHHQYKFYVDG---EW--RHDENQP   87 (271)
Q Consensus        22 pVtF~-w~~~ak~V~V~GsF~nW~~-~ipM~k~~~~~g~f~~~~~-------LppG~yeYKFiVDG---~W--~~Dp~~P   87 (271)
                      -|+|+ |..+|++|+|+|+|++|.. .++|.+.+  .|+|++.++       +++|.+ |||.|+|   .|  +.||...
T Consensus        66 gv~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~~--~GvW~~~v~~~~g~~~i~~g~~-Y~y~i~~~~g~~~~~~dpya~  142 (755)
T 3aml_A           66 ATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKDK--FGIWSIKISHVNGKPAIPHNSK-VKFRFRHGGGAWVDRIPAWIR  142 (755)
T ss_dssp             EEEEEEECTTCSEEEEEEGGGTTCCTTCBCEECT--TSEEEEEEECBTTBCSSCTTEE-EEEEEECTTCCCEEECCTTCS
T ss_pred             eEEEEEECCCCCEEEEEEecCCCCCceeeceeCC--CCEEEEEEcccccccCCCCCCE-EEEEEECCCCcEEecCCcchh
Confidence            47775 7789999999999999976 47999854  699999988       677764 8888864   54  4577655


Q ss_pred             ee
Q 024154           88 HV   89 (271)
Q Consensus        88 ~v   89 (271)
                      .+
T Consensus       143 ~~  144 (755)
T 3aml_A          143 YA  144 (755)
T ss_dssp             CE
T ss_pred             eE
Confidence            43

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=97.49  E-value=0.00016  Score=59.11  Aligned_cols=69  Identities=20%  Similarity=0.264  Sum_probs=55.3

Q ss_pred             HHHHhhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          147 RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       147 ~~~~fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      .+.+||..+-. ++|=...+++.++.+-++++|+..|.++|+.+.|+.|. .++++|++|..|++..+...
T Consensus         8 ~~e~~l~~~~~-~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~-~~~lvGiit~~Di~~~~~~~   76 (156)
T 3k6e_A            8 EFETFLLGQEE-TFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD-EKQFVGTIGLRDIMAYQMEH   76 (156)
T ss_dssp             HHHHHHHTTGG-GGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHH
T ss_pred             HHHHHhhccHH-HhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEecchhhhhhhc
Confidence            45556655443 44444568999999999999999999999999999985 47899999999999877654

>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}

Probab=97.31  E-value=0.00029  Score=72.00  Aligned_cols=67  Identities=31%  Similarity=0.515  Sum_probs=51.3

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCC-CCCCCCCCCCCCeEEEEEe-cCCceEEEEEEE---cCee--ecCCCCCeee
Q 024154           22 PVRFI-WPNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYV---DGEW--RHDENQPHVS   90 (271)
Q Consensus        22 pVtF~-w~~~ak~V~V~GsF~nW~~-~ipM~k~~~~~g~f~~~~~-LppG~yeYKFiV---DG~W--~~Dp~~P~v~   90 (271)
                      -|+|+ |...|++|.|+|+||+|.. ..||.+.. ..|+|++.++ +.+|. .|||.|   ||++  +.||....+.
T Consensus       137 g~~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~~-~~GvW~~~i~~~~~g~-~Y~y~i~~~~g~~~~~~DPya~~~~  211 (722)
T 3k1d_A          137 GVSFAVWAPNAKGVSLIGEFNGWNGHEAPMRVLG-PSGVWELFWPDFPCDG-LYKFRVHGADGVVTDRADPFAFGTE  211 (722)
T ss_dssp             EEEEEEECTTCSEEEEEEGGGTTCCCSCBCEECG-GGCEEEEEEETCCTTC-EEEEEEECTTSCEEEECCTTCSSBC
T ss_pred             eEEEEEECCCCCEEEEEeecCCCCCCcccCEEcC-CCCEEEEEeCCCCCCC-EEEEEEEcCCCcEEEeecccceeec
Confidence            46675 5678999999999999986 46998753 2589999987 77884 578887   5654  6788776554

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=97.12  E-value=0.00047  Score=53.63  Aligned_cols=65  Identities=9%  Similarity=0.216  Sum_probs=55.0

Q ss_pred             hhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       152 l~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      |...++-|+|-....++.++.+.++++|+..|.++++...|+.|.+.++++|++|..|++..+..
T Consensus         3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~   67 (130)
T 3i8n_A            3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQS   67 (130)
T ss_dssp             ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHT
T ss_pred             cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhc
Confidence            45667788886667888999999999999999999999999999877899999999999987654

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=96.96  E-value=0.0011  Score=47.78  Aligned_cols=46  Identities=13%  Similarity=0.172  Sum_probs=42.3

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI  213 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~i  213 (271)
                      |+|.+.-+-++++|...|.++++.++|+=|  .++.+|++|-.|+++-
T Consensus         1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d--~~~lvGIvT~~Di~~~   46 (70)
T 3ghd_A            1 KAIVVQPKDTVDRVAKILSRNKAGSAVVME--GDEILGVVTERDILDK   46 (70)
T ss_dssp             CEEEECTTCBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHHHH
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHH
Confidence            689999999999999999999999999997  4789999999999753

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=96.95  E-value=0.0012  Score=52.32  Aligned_cols=66  Identities=12%  Similarity=0.187  Sum_probs=58.0

Q ss_pred             hhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       152 l~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      |...++-|+|-...+++.++.+.++++|+..|.++++...|+-|.+.++++|++|..|++..+..-
T Consensus        20 l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~   85 (148)
T 3lv9_A           20 FEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINE   85 (148)
T ss_dssp             GGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHH
T ss_pred             cCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence            466778888866567899999999999999999999999999998778999999999999876544

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=96.92  E-value=0.00029  Score=62.09  Aligned_cols=55  Identities=16%  Similarity=0.267  Sum_probs=48.3

Q ss_pred             cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      +.-|++-  .++++++.+.++.+|+..|.++++.++|+||   ++++|++|..|++..+.
T Consensus        21 ~V~dim~--~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d---~~l~GivT~~Di~~~~~   75 (296)
T 3ddj_A           21 NIETLMI--KNPPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVE   75 (296)
T ss_dssp             SGGGTCE--ESCCEECTTSBHHHHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGT
T ss_pred             CHHHhcc--CCCcEECCCccHHHHHHHHHHCCCceEEEEC---CeEEEEEeHHHHHHHhc
Confidence            3345553  3899999999999999999999999999999   99999999999998763

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=96.70  E-value=0.0015  Score=54.14  Aligned_cols=65  Identities=14%  Similarity=0.176  Sum_probs=57.8

Q ss_pred             hhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       152 l~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      |...++-|+|-...+++.++.+.++++|+..|.++++...|+.|...++++|++|..|++..+..
T Consensus        33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~   97 (173)
T 3ocm_A           33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLIT   97 (173)
T ss_dssp             HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHH
T ss_pred             cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhc
Confidence            46788999986556788999999999999999999999999999877899999999999987653

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=96.61  E-value=0.0012  Score=51.69  Aligned_cols=57  Identities=12%  Similarity=0.190  Sum_probs=48.8

Q ss_pred             ccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          159 ELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       159 d~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      |+|-...+++.++.+.++++|+..|.++++...|+-|.+.++++|++|..|++..+.
T Consensus         6 ~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~   62 (130)
T 3hf7_A            6 DIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT   62 (130)
T ss_dssp             HHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHT
T ss_pred             HhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHh
Confidence            444323467888999999999999999999999999887899999999999998764

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=96.60  E-value=0.0042  Score=49.88  Aligned_cols=65  Identities=18%  Similarity=0.202  Sum_probs=57.5

Q ss_pred             HHHHHhhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          146 DRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       146 ~~~~~fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      ..+...|...++-|+|-.   .+.+..+.++.+|+..|.++++..+|+-|.+ ++++|++|..|++..+
T Consensus         8 ~~l~~~l~~~~v~~im~~---~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~   72 (159)
T 3fv6_A            8 QLLADKLKKLQVKDFQSI---PVVIHENVSVYDAICTMFLEDVGTLFVVDRD-AVLVGVLSRKDLLRAS   72 (159)
T ss_dssp             HHHHHHHTTCBGGGSCBC---CCEEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHH
T ss_pred             HHHHHHHhhCCHHHHcCC---CEEECCCCcHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHh
Confidence            367788899999999853   5689999999999999999999999999954 7899999999999866

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=96.60  E-value=0.002  Score=52.51  Aligned_cols=67  Identities=13%  Similarity=0.241  Sum_probs=53.0

Q ss_pred             HhhhhccccccCCCCCC--eEEE--cccchHHHHHHHHHHcCCCeecccc-CCCCceeeeechHHHHHHHHH
Q 024154          150 SFLSTHTVYELLPDSGK--VTAL--DVNLAVKQAFHVLYEQGLPMVPLWD-DFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       150 ~fl~~~tcYd~lP~s~k--~vv~--D~~l~v~~Af~al~~~g~~~aplwd-s~~~~f~G~lt~tD~i~il~~  216 (271)
                      ++++..++-|+|-...+  ++.+  +.+.++.+|+..|.++++..+|+-+ .+.++++|++|..|++..+..
T Consensus         6 ~~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~   77 (185)
T 2j9l_A            6 EFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIEN   77 (185)
T ss_dssp             ---CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHH
T ss_pred             hhhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHh
Confidence            45666777777755432  5666  9999999999999999999999995 356899999999999987764

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=96.56  E-value=0.0018  Score=53.13  Aligned_cols=64  Identities=19%  Similarity=0.305  Sum_probs=54.0

Q ss_pred             hhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       152 l~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      |...++-|+|-...+++.+..+.++++|+..|.++++...|+-|.+.++++|++|..|++..+.
T Consensus        39 l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~  102 (172)
T 3lhh_A           39 LDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESI  102 (172)
T ss_dssp             ----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHH
T ss_pred             cCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHh
Confidence            4567788887555678899999999999999999999999999987789999999999998775

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=96.53  E-value=0.0011  Score=52.42  Aligned_cols=63  Identities=21%  Similarity=0.322  Sum_probs=54.3

Q ss_pred             hhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       152 l~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      |...++-|+|-....++.+..+.++++|+..|.++++..+|+.|.+ ++++|++|..|++..+.
T Consensus        12 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~   74 (150)
T 3lqn_A           12 FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPM-YKLHGLISTAMILDGIL   74 (150)
T ss_dssp             HHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHTB
T ss_pred             hhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCC-CCEEEEEEHHHHHHHHH
Confidence            5667777777655678889999999999999999999999999964 88999999999988664

>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A

Probab=96.48  E-value=0.0069  Score=61.49  Aligned_cols=55  Identities=18%  Similarity=0.415  Sum_probs=42.8

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCC-----CCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCee
Q 024154           22 PVRFI-WPNGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW   80 (271)
Q Consensus        22 pVtF~-w~~~ak~V~V~GsF~nW~~-----~ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVDG~W   80 (271)
                      -|+|+ |...|++|.|++ |+.+..     .++|.+.+  .|+|++.+. +.+|.+ |+|.|+|.|
T Consensus        30 g~~F~vwap~A~~V~l~l-f~~~~~~~~~~~~~m~~~~--~gvw~~~v~~~~~g~~-Y~y~v~g~~   91 (718)
T 2vr5_A           30 GVNFSLFSENAEKVELLL-YSLTNQKYPKEIIEVKNKT--GDIWHVFVPGLRPGQL-YAYRVYGPY   91 (718)
T ss_dssp             EEEEEEECSSCSEEEEEE-CCSSCCSSCSEEEEECEES--SSEEEEEEETCCTTCE-EEEEEECCE
T ss_pred             eEEEEEECCCCCEEEEEE-EcCCCCCCcceEEeCccCC--CCEEEEEeCCCCCCCE-EEEEEeeec
Confidence            47786 677899999999 875431     36888754  689999986 788987 999999853

>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=96.45  E-value=0.002  Score=65.84  Aligned_cols=54  Identities=17%  Similarity=0.308  Sum_probs=43.7

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCC-----CCCCCCCCCCCCeEEEEEe-cC------CceEEEEEEEcCe
Q 024154           23 VRFI-WPNGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICR-LP------PGHHQYKFYVDGE   79 (271)
Q Consensus        23 VtF~-w~~~ak~V~V~GsF~nW~~-----~ipM~k~~~~~g~f~~~~~-Lp------pG~yeYKFiVDG~   79 (271)
                      |+|+ |...|++|.|++ |+.|..     .++|.+.+  .|+|++.+. +.      +|.|.|+|.|+|.
T Consensus        18 ~~F~vwap~A~~V~l~l-~~~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~~~~~~~g~y~Y~y~v~g~   84 (750)
T 1bf2_A           18 ITFRVYSSQATRIVLYL-YSAGYGVQESATYTLSPAG--SGVWAVTVPVSSIKAAGITGAVYYGYRAWGP   84 (750)
T ss_dssp             EEEEEECSSCSEEEEEE-ESSSSSCCCSEEEECEECS--TTEEEEEEEHHHHHHTTCCSCCEEEEEEEBT
T ss_pred             EEEEEECCCCCEEEEEE-EccCCCCccceEEecccCC--CCEEEEEECCcccccccCCCCEEEEEEEEee
Confidence            7775 677899999998 887643     36888754  689999987 67      8998999999975

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=96.44  E-value=0.0026  Score=50.68  Aligned_cols=59  Identities=15%  Similarity=0.284  Sum_probs=49.7

Q ss_pred             ccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccC-CCCceeeeechHHHHHHHH
Q 024154          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDD-FKGRFVGVLSALDFILILR  215 (271)
Q Consensus       155 ~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds-~~~~f~G~lt~tD~i~il~  215 (271)
                      .++-|+|-.  .++.++.+.++.+|+..|.++++..+|+.|. +.++++|++|..|++..+.
T Consensus        13 ~~v~dim~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~   72 (164)
T 2pfi_A           13 VRVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQ   72 (164)
T ss_dssp             CBHHHHCBC--CCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred             CCHHHHcCC--CCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHH
Confidence            344455532  6778899999999999999999999999998 5789999999999988764

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=96.44  E-value=0.0012  Score=52.81  Aligned_cols=66  Identities=17%  Similarity=0.292  Sum_probs=55.4

Q ss_pred             hhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccc-cCCCCceeeeechHHHHHHHHHh
Q 024154          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLW-DDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       152 l~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplw-ds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      |...++-|+|-...+++.+..+.++++|+..|.++++...|+- |.+.++++|++|..|++..+..-
T Consensus        17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~   83 (153)
T 3oco_A           17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARID   83 (153)
T ss_dssp             HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHH
T ss_pred             cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcC
Confidence            3556777777444578889999999999999999999999999 76678999999999999876543

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=96.41  E-value=0.0033  Score=48.64  Aligned_cols=63  Identities=19%  Similarity=0.367  Sum_probs=52.2

Q ss_pred             HhhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHH-HHHHH
Q 024154          150 SFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF-ILILR  215 (271)
Q Consensus       150 ~fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~-i~il~  215 (271)
                      ++|...++-|++-  .+++.+..+.++.+|+..|.++++..+|+-|.+ ++++|++|..|+ +..+.
T Consensus         3 ~~l~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~   66 (138)
T 2p9m_A            3 DTLKNIKVKDVMT--KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDE-NKVIGIVTTTDIGYNLIR   66 (138)
T ss_dssp             --CTTCBGGGTSB--CSCCCEETTSBHHHHHHHHHHHTCCEEEEECTT-CBEEEEEEHHHHHHHHTT
T ss_pred             cccccCCHHHhhc--CCceEECCCCcHHHHHHHHHHCCCcEEEEECCC-CeEEEEEEHHHHHHHHHh
Confidence            4567778888873  367888999999999999999999999999975 789999999999 76543

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=96.40  E-value=0.0047  Score=47.56  Aligned_cols=60  Identities=17%  Similarity=0.258  Sum_probs=49.9

Q ss_pred             hccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       154 ~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      ..++-|++-.  +++.++.+.++.+|+..|.++++..+|+-|  .++++|++|..|++..+..-
T Consensus         3 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~Givt~~dl~~~~~~~   62 (133)
T 2ef7_A            3 EEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVD--GNKPVGIITERDIVKAIGKG   62 (133)
T ss_dssp             CCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHTT
T ss_pred             cccHHHhccC--CCEEECCCCcHHHHHHHHHhcCCCEEEEEE--CCEEEEEEcHHHHHHHHhcC
Confidence            3455565533  577889999999999999999999999999  68999999999998877643

>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A

Probab=96.37  E-value=0.002  Score=63.36  Aligned_cols=63  Identities=21%  Similarity=0.226  Sum_probs=50.4

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCe-eecCCCCCeee
Q 024154           22 PVRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-WRHDENQPHVS   90 (271)
Q Consensus        22 pVtF~-w~~~ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVDG~-W~~Dp~~P~v~   90 (271)
                      -++|+ |...|++|.|++.++   ..++|.+.+  .|+|++.+. +.+|. .|+|.|||. .+.||......
T Consensus        10 ~~~f~vwap~a~~v~l~~~~~---~~~~m~~~~--~g~w~~~~~~~~~g~-~Y~~~~~~~~~~~DP~~~~~~   75 (558)
T 3vgf_A           10 EVIFTLWAPYQKSVKLKVLEK---GLYEMERDE--KGYFTITLNNVKVRD-RYKYVLDDASEIPDPASRYQP   75 (558)
T ss_dssp             EEEEEEECTTCSCCEEEETTT---EEEECEECT--TCEEEEEESSCCTTC-EEEEECTTSCEECCTTCSCCT
T ss_pred             cEEEEEECCCCCEEEEEEecC---ceeecccCC--CCEEEEEECCCCCCC-EEEEEEeCCccccCcchhhcc
Confidence            45665 567899999999987   458999865  699999997 78885 699999996 78888766443

>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A

Probab=96.35  E-value=0.011  Score=46.35  Aligned_cols=64  Identities=16%  Similarity=0.321  Sum_probs=48.5

Q ss_pred             eEEEEEecCCCceEEEEeccC--CCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEEcC--eeecCCCC
Q 024154           21 VPVRFIWPNGGRRVSLSGSFT--RWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDG--EWRHDENQ   86 (271)
Q Consensus        21 vpVtF~w~~~ak~V~V~GsF~--nW~~~--ipM~k~~~~~g~f~~~~~LppG-~yeYKFiVDG--~W~~Dp~~   86 (271)
                      ..+++.|..++++|+|-..+.  +|+..  ++|.+.. .++++..++.|+.| .++|+|. ||  .|-.++..
T Consensus         5 ~~vtiyY~~g~~~vylHyg~~~g~Wt~~~~v~M~~~~-~~gw~~~TI~l~~g~~~~~~F~-dG~~~WDNn~g~   75 (104)
T 2laa_A            5 NKVTIYYKKGFNSPYIHYRPAGGSWTAAPGVKMQDAE-ISGYAKITVDIGSASQLEAAFN-DGNNNWDSNNTK   75 (104)
T ss_dssp             CEEEEEEECSSSSCEEEEEETTSCCCSSSCEECEEET-TTTEEEEEEECTTCSCEEEEEE-CSSSCEESTTTS
T ss_pred             CEEEEEEcCCCCcEEEEEcCCCCCCCcCCcccccccc-CCCeEEEEEECCCCCEEEEEEe-CCCCcCcCCCCc
Confidence            567888888899999998885  89874  5787643 24544699999975 7999995 87  48776554

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=96.31  E-value=0.00086  Score=51.89  Aligned_cols=51  Identities=22%  Similarity=0.393  Sum_probs=45.7

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      .+++.++.+.++++|+..|.++++...|+.|.+.++++|++|..|++..+.
T Consensus        13 ~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~   63 (127)
T 3nqr_A           13 SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR   63 (127)
T ss_dssp             GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGS
T ss_pred             HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHh
Confidence            457788899999999999999999999999987789999999999987653

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=96.29  E-value=0.0058  Score=49.03  Aligned_cols=67  Identities=18%  Similarity=0.211  Sum_probs=55.6

Q ss_pred             hccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCC--ceeeeechHHHHHHHHHhccC
Q 024154          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKG--RFVGVLSALDFILILRELGTN  220 (271)
Q Consensus       154 ~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~--~f~G~lt~tD~i~il~~~~~~  220 (271)
                      ..++-|++-....++.++.+.++..|+..|.++++...|+-|....  +++|++|..|++..|..+...
T Consensus        80 ~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~~~~~  148 (159)
T 3fv6_A           80 SVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSLSEN  148 (159)
T ss_dssp             TCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHHHHTT
T ss_pred             CcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHHHhhc
Confidence            4456666655446788899999999999999999999999996532  899999999999998888654

>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*

Probab=96.29  E-value=0.0035  Score=62.35  Aligned_cols=62  Identities=21%  Similarity=0.362  Sum_probs=49.6

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeeecCCCCCeee
Q 024154           22 PVRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVS   90 (271)
Q Consensus        22 pVtF~-w~~~ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~LppG~yeYKFiVDG~W~~Dp~~P~v~   90 (271)
                      .|+|+ |...|+.|.|+|+   . ..++|.+.+  .|+|++.+.+.+|.+ |+|.|||..+.||......
T Consensus        35 ~~~f~vwap~a~~v~l~~~---~-~~~~m~~~~--~g~w~~~~~~~~g~~-Y~~~v~g~~~~DPya~~~~   97 (602)
T 2bhu_A           35 GTRFRLWTSTARTVAVRVN---G-TEHVMTSLG--GGIYELELPVGPGAR-YLFVLDGVPTPDPYARFLP   97 (602)
T ss_dssp             CEEEEEECSSCSSEEEEET---T-EEEECEEEE--TTEEEEEESCCTTCE-EEEEETTEEECCTTCSCCT
T ss_pred             eEEEEEECCCCCEEEEEEc---C-CEEeCeeCC--CcEEEEEEECCCCcE-EEEEECCeEecCCCccccC
Confidence            57775 6778999999995   2 357998864  689999999888875 9999999777888876554

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=96.23  E-value=0.0032  Score=49.25  Aligned_cols=60  Identities=22%  Similarity=0.346  Sum_probs=52.0

Q ss_pred             hccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       154 ~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      ..++-|+|-....++.++.+.++.+|+..|.++++..+|+-|.+ ++++|++|..|++.++
T Consensus         4 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~   63 (152)
T 4gqw_A            4 VYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDED-WKLVGLVSDYDLLALD   63 (152)
T ss_dssp             CSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHTTCC
T ss_pred             eEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCC-CeEEEEEEHHHHHHhh
Confidence            45677777666678999999999999999999999999999965 7899999999998643

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=96.21  E-value=0.0056  Score=48.63  Aligned_cols=51  Identities=20%  Similarity=0.205  Sum_probs=46.0

Q ss_pred             eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhcc
Q 024154          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGT  219 (271)
Q Consensus       167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~~  219 (271)
                      ++.++.+.++.+|+..|.++++..+|+-|  .++++||+|..|++..+.....
T Consensus       100 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~l~Giit~~dil~~~~~~~~  150 (164)
T 2pfi_A          100 TLTLFSETTLHQAQNLFKLLNLQSLFVTS--RGRAVGCVSWVEMKKAISNLTN  150 (164)
T ss_dssp             CCCEETTCBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHHHHHHHHHS
T ss_pred             ceEECCCCcHHHHHHHHHHhCCCEEEEEE--CCEEEEEEEHHHHHHHHHhhhC
Confidence            67788899999999999999999999999  4899999999999998877654

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=96.17  E-value=0.0065  Score=46.04  Aligned_cols=49  Identities=16%  Similarity=0.302  Sum_probs=44.8

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      +++.++.+.++.+|+..|.++++..+|+-|  .++++|++|..|++..+..
T Consensus        10 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~G~it~~dl~~~~~~   58 (125)
T 1pbj_A           10 DVDTIDITASLEDVLRNYVENAKGSSVVVK--EGVRVGIVTTWDVLEAIAE   58 (125)
T ss_dssp             SCCEEETTCBHHHHHHHHHHHCCCEEEEEE--TTEEEEEEEHHHHHHHHHH
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEEe--CCeeEEEEeHHHHHHHHhc
Confidence            678889999999999999999999999999  6899999999999987654

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=96.16  E-value=0.011  Score=47.02  Aligned_cols=58  Identities=16%  Similarity=0.331  Sum_probs=50.6

Q ss_pred             hccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       154 ~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      ..++-+++   ..++.+..+.++.+|+..|.++++..+|+-|.. ++++|++|.+|++..|.
T Consensus        85 ~~~v~~~m---~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-g~~vGivt~~dil~~l~  142 (153)
T 3oco_A           85 KAKISTIM---RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEY-GGTSGIITDKDVYEELF  142 (153)
T ss_dssp             TSBGGGTC---BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTT-SCEEEEECHHHHHHHHH
T ss_pred             CCcHHHHh---CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCC-CCEEEEeeHHHHHHHHh
Confidence            45677777   367888999999999999999999999999854 78999999999998775

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=96.15  E-value=0.0012  Score=51.98  Aligned_cols=57  Identities=11%  Similarity=0.272  Sum_probs=48.2

Q ss_pred             ccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          159 ELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       159 d~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      |+|-...+++.+..+.++++|+..|.++++...|+-|...++++|++|..|++..+.
T Consensus         7 ~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~   63 (136)
T 3lfr_A            7 DIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLIL   63 (136)
T ss_dssp             HHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGG
T ss_pred             hccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHH
Confidence            344323467888999999999999999999999999987789999999999987653

>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A

Probab=96.14  E-value=0.0051  Score=60.63  Aligned_cols=59  Identities=12%  Similarity=0.047  Sum_probs=44.7

Q ss_pred             cceEEEEE-ecCCCceEEE-EeccCCCCC----CCCCCCCC--CCCCeEEEEEecCCceEEEEEEEc
Q 024154           19 ILVPVRFI-WPNGGRRVSL-SGSFTRWSE----PMPMSPSE--GCPAVFQIICRLPPGHHQYKFYVD   77 (271)
Q Consensus        19 ~~vpVtF~-w~~~ak~V~V-~GsF~nW~~----~ipM~k~~--~~~g~f~~~~~LppG~yeYKFiVD   77 (271)
                      ..+.++|+ |...+++|.| +|+|++|..    .++|++..  +..++|++.++.......|+|.|.
T Consensus        21 ~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~m~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i~   87 (585)
T 1wzl_A           21 TQLRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLT   87 (585)
T ss_dssp             TEEEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEEECSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred             CEEEEEEEECCCCccEEEEEECCCcCCCCCceEEEEEEEeecCCCEEEEEEEEECCCCeEEEEEEEE
Confidence            34566664 5668999999 799999975    46898743  223579999998777789999985

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=96.13  E-value=0.0071  Score=47.90  Aligned_cols=61  Identities=13%  Similarity=0.297  Sum_probs=52.9

Q ss_pred             ccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       155 ~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      .++-|+|-....++.++.+.++.+|+..|.++++..+|+-|.+ ++++|++|..|++..+..
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~   88 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDD-MNIIGIFTDGDLRRVFDT   88 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTT-CBEEEEEEHHHHHHHHCS
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCC-CcEEEEecHHHHHHHHhc
Confidence            4778887554478899999999999999999999999999865 789999999999987754

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=96.12  E-value=0.0095  Score=47.93  Aligned_cols=51  Identities=20%  Similarity=0.331  Sum_probs=46.6

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhc
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG  218 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~  218 (271)
                      .++.++.+-++..|+..|.++++...|+-|.  ++++|++|..|++..+....
T Consensus        87 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--g~lvGiit~~dil~~~~~~~  137 (160)
T 2o16_A           87 DVTSVAPQAGLKESAIYMQKHKIGCLPVVAK--DVLVGIITDSDFVTIAINLL  137 (160)
T ss_dssp             CEEEBCTTSBHHHHHHHHHHTTCSCEEEEET--TEEEEEECHHHHHHHHHHHH
T ss_pred             CCeEECCCCCHHHHHHHHHHhCCCEEEEEEC--CEEEEEEEHHHHHHHHHHHh
Confidence            6889999999999999999999999999987  89999999999999777654

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=96.06  E-value=0.0089  Score=46.30  Aligned_cols=50  Identities=22%  Similarity=0.238  Sum_probs=43.5

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      .++.++.+.++.+|+..|.++++..+|+-|.. ++++||+|..|++..|..
T Consensus        92 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~-g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A           92 GVYTCTKNDKLSTIMDNIRKARVHRFFVVDDV-GRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             --CEECTTSBHHHHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHHHH
T ss_pred             CCeEECCCCcHHHHHHHHHHCCCCEEEEECCC-CCEEEEEEHHHHHHHHHh
Confidence            57788999999999999999999999999854 899999999999987753

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=96.06  E-value=0.0065  Score=47.45  Aligned_cols=58  Identities=22%  Similarity=0.287  Sum_probs=47.6

Q ss_pred             ccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       155 ~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      .++-+++-  ..++.++.+ ++.+|+..|.++++..+|+-|. .++++|++|..|+++.+..
T Consensus        71 ~~v~~~m~--~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~~  128 (141)
T 2rih_A           71 GPAMPIAN--SPITVLDTD-PVHVAAEKMRRHNIRHVVVVNK-NGELVGVLSIRDLCFERAI  128 (141)
T ss_dssp             SBSGGGCB--CCCEEETTS-BHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHSCHHH
T ss_pred             CCHHHHcC--CCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcC-CCcEEEEEEHHHHHHHHHH
Confidence            34555553  368889999 9999999999999999999994 5899999999999875443

>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*

Probab=96.03  E-value=0.015  Score=58.52  Aligned_cols=56  Identities=23%  Similarity=0.513  Sum_probs=46.2

Q ss_pred             cceEEEEEecC-----CCceEEEEeccC---CCCC--------CC-CCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 024154           19 ILVPVRFIWPN-----GGRRVSLSGSFT---RWSE--------PM-PMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (271)
Q Consensus        19 ~~vpVtF~w~~-----~ak~V~V~GsF~---nW~~--------~i-pM~k~~~~~g~f~~~~~LppG-~yeYKFiV   76 (271)
                      ..+.|+|+..+     -+++|.|+|+-.   +|++        .+ +|...+  ...|++++.||+| .+||||++
T Consensus       580 ~~v~v~F~v~~~~t~~~G~~l~v~G~~~~LG~W~~~~~~~~~~a~~~l~~~~--~~~W~~~v~l~~~~~~eyKy~~  653 (686)
T 1qho_A          580 TQTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPN--YPDWFYVFSVPAGKTIQFKFFI  653 (686)
T ss_dssp             SEEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCTT--TTSEEEEEEEETTCEEEEEEEE
T ss_pred             CeEEEEEEEecccCCCCCCEEEEEeChHHhCCCCCccccchhhhhcccccCC--CCcEEEEEEeCCCCeEEEEEEE
Confidence            56889999975     378999999986   7988        45 787644  5789999999988 59999998

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=96.01  E-value=0.0021  Score=51.74  Aligned_cols=63  Identities=16%  Similarity=0.271  Sum_probs=55.5

Q ss_pred             hhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       152 l~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      |...++-|+|-...+++.+..+.++++|+..|.++++...|+-|.+.++++|++|..|++..+
T Consensus        35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~   97 (156)
T 3oi8_A           35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYM   97 (156)
T ss_dssp             HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGS
T ss_pred             cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHH
Confidence            467788898865567899999999999999999999999999998767999999999998754

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=96.01  E-value=0.0057  Score=46.35  Aligned_cols=48  Identities=17%  Similarity=0.232  Sum_probs=43.6

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      .++.++.+.++.+|+..|.++++...|+-|.  ++++|++|..|++..|.
T Consensus        74 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~--~~~~Gvit~~dl~~~l~  121 (125)
T 1pbj_A           74 DLVTISPRATIKEAAEKMVKNVVWRLLVEED--DEIIGVISATDILRAKM  121 (125)
T ss_dssp             GGGEECTTSCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHC
T ss_pred             CCeEECCCCCHHHHHHHHHhcCCcEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            5778888999999999999999999999997  89999999999988663

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=95.97  E-value=0.0017  Score=50.38  Aligned_cols=57  Identities=18%  Similarity=0.412  Sum_probs=47.8

Q ss_pred             ccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          159 ELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       159 d~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      |+|-...+++.+..+.++++|+..|.++++...|+-|.+.++++|++|..|++..+.
T Consensus         9 diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~   65 (129)
T 3jtf_A            9 DIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML   65 (129)
T ss_dssp             HHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT
T ss_pred             HhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc
Confidence            333333467788889999999999999999999999987789999999999987653

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=95.97  E-value=0.018  Score=46.97  Aligned_cols=58  Identities=17%  Similarity=0.285  Sum_probs=50.2

Q ss_pred             hccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       154 ~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      ..++-+++   ..++.+..+.++.+|+..|.++++..+|+-|.. ++++||+|.+|++..|.
T Consensus       106 ~~~v~~im---~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dil~~l~  163 (172)
T 3lhh_A          106 RLELVDLV---KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEY-GDLKGLVTLQDMMDALT  163 (172)
T ss_dssp             CCCGGGGC---BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHH
T ss_pred             cccHHHHh---cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCC-CCEEEEeeHHHHHHHHh
Confidence            45677777   467888899999999999999999999999854 68999999999998765

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=95.97  E-value=0.0086  Score=46.71  Aligned_cols=51  Identities=16%  Similarity=0.333  Sum_probs=43.3

Q ss_pred             eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhc
Q 024154          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG  218 (271)
Q Consensus       167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~  218 (271)
                      ++.++.+.++.+|+..|.++++...|+-|. .++++|++|.+|+++.+....
T Consensus        95 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dil~~~~~~~  145 (152)
T 4gqw_A           95 PLVVEEKTNLEDAAKILLETKYRRLPVVDS-DGKLVGIITRGNVVRAALQIK  145 (152)
T ss_dssp             CCCEESSSBHHHHHHHHHHSSCCEEEEECT-TSBEEEEEEHHHHHHHHHC--
T ss_pred             ceEECCCCcHHHHHHHHHHCCCCEEEEECC-CCcEEEEEEHHHHHHHHHhcc
Confidence            456788889999999999999999999984 478999999999999876543

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=95.96  E-value=0.012  Score=47.39  Aligned_cols=52  Identities=15%  Similarity=0.236  Sum_probs=46.6

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      ..++.++.+.++.+|+..|.++++..+|+-|.. ++++|++|..|++..+...
T Consensus        35 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~   86 (165)
T 3fhm_A           35 RDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDAD-GVVLGIFTERDLVKAVAGQ   86 (165)
T ss_dssp             SCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHH
T ss_pred             CCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHHhc
Confidence            467889999999999999999999999999954 8899999999999877654

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=95.96  E-value=0.0078  Score=46.64  Aligned_cols=51  Identities=18%  Similarity=0.369  Sum_probs=46.0

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      .+++.++.+.++.+|+..|.++++..+|+.|.. ++++|++|..|++..+..
T Consensus        19 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~   69 (144)
T 2nyc_A           19 DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKG   69 (144)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHT
T ss_pred             CCceEECCCCcHHHHHHHHHHcCcceeeEEcCC-CcEEEEEcHHHHHHHhcc
Confidence            578889999999999999999999999999975 889999999999887653

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=95.95  E-value=0.01  Score=45.89  Aligned_cols=58  Identities=22%  Similarity=0.381  Sum_probs=47.9

Q ss_pred             hccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       154 ~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      ..+.-|++-.  .++.++.+.++.+|+..|.++++..+|+-|  .++++|++|..|++..+.
T Consensus        73 ~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dll~~~~  130 (135)
T 2rc3_A           73 DTQVKEIMTR--QVAYVDLNNTNEDCMALITEMRVRHLPVLD--DGKVIGLLSIGDLVKDAI  130 (135)
T ss_dssp             GSBGGGTSBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred             cCCHHHhccC--CCeEECCCCcHHHHHHHHHHhCCCEEEEEe--CCEEEEEEEHHHHHHHHH
Confidence            3445555532  567788889999999999999999999999  489999999999988664

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=95.95  E-value=0.014  Score=45.98  Aligned_cols=58  Identities=19%  Similarity=0.301  Sum_probs=49.6

Q ss_pred             hccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       154 ~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      ..++-+++   ..++.+..+.++.+|+..|.++++..+|+-|. .++++|++|..|+++.|.
T Consensus        87 ~~~v~~~m---~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~  144 (148)
T 3lv9_A           87 KIELEEIL---RDIIYISENLTIDKALERIRKEKLQLAIVVDE-YGGTSGVVTIEDILEEIV  144 (148)
T ss_dssp             CCCGGGTC---BCCEEEETTSBHHHHHHHHHHHTCSEEEEECT-TSSEEEEEEHHHHHHHHH
T ss_pred             CccHHHhc---CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHh
Confidence            44567777   35788899999999999999999999999985 468999999999998764

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=95.92  E-value=0.0099  Score=45.97  Aligned_cols=48  Identities=8%  Similarity=0.105  Sum_probs=42.5

Q ss_pred             eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      ++.+..+.++.+|+..|.++++..+|+-|. .++++|++|.+|+++.|.
T Consensus        78 ~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~-~g~~~Giit~~Dil~~l~  125 (129)
T 3jtf_A           78 AVFIPEVKRLNVLLREFRASRNHLAIVIDE-HGGISGLVTMEDVLEQIV  125 (129)
T ss_dssp             CCEEETTCBHHHHHHHHHTSSCCEEEEECC--CCEEEEEEHHHHHHHHH
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHh
Confidence            667788889999999999999999999985 478999999999998764

>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}

Probab=95.91  E-value=0.0072  Score=60.69  Aligned_cols=65  Identities=18%  Similarity=0.280  Sum_probs=48.8

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCC--CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCe-------------eecCC
Q 024154           22 PVRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-------------WRHDE   84 (271)
Q Consensus        22 pVtF~-w~~~ak~V~V~GsF~nW~--~~ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVDG~-------------W~~Dp   84 (271)
                      -++|+ |...|++|.|++ |+++.  ..++|.+.+  .|+|++.+. +.+|.+ |+|.|+|.             .+.||
T Consensus        20 g~~F~vwap~A~~V~l~~-f~~~~~~~~~~m~~~~--~g~w~~~v~~~~~g~~-Y~y~v~~~~~p~~g~~~~~~~~~~DP   95 (657)
T 2wsk_A           20 GVNFTLFSAHAERVELCV-FDANGQEHRYDLPGHS--GDIWHGYLPDARPGLR-YGYRVHGPWQPAEGHRFNPAKLLIDP   95 (657)
T ss_dssp             EEEEEEECSSCSEEEEEE-ECTTCCEEEEECCEEE--TTEEEEEEETCCTTCE-EEEEEECCCCGGGTCCCCTTSCBCCT
T ss_pred             eEEEEEECCCCCEEEEEE-ECCCCCEEEEeCcCCC--CCEEEEEECCCCCCCE-EEEEEeeeecCccCcccccceEEcCc
Confidence            47775 677899999999 88764  247898654  689999886 778876 99999983             45666


Q ss_pred             CCCeee
Q 024154           85 NQPHVS   90 (271)
Q Consensus        85 ~~P~v~   90 (271)
                      ....+.
T Consensus        96 ya~~~~  101 (657)
T 2wsk_A           96 CARQID  101 (657)
T ss_dssp             TCSCEE
T ss_pred             Ccceec
Confidence            655444

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=95.87  E-value=0.013  Score=47.17  Aligned_cols=58  Identities=19%  Similarity=0.277  Sum_probs=49.3

Q ss_pred             hccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       154 ~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      ..++-+++-  ..++.++.+.++..|+..|.++++...|+-|.  ++++|++|..|++..+.
T Consensus        92 ~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--g~~~Giit~~dil~~~~  149 (165)
T 3fhm_A           92 QQSVSVAMT--KNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN--GRLAGIISIGDVVKARI  149 (165)
T ss_dssp             TSBGGGTSB--SSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHTT
T ss_pred             cCCHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            455666665  35677888999999999999999999999998  89999999999988654

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=95.86  E-value=0.0049  Score=47.50  Aligned_cols=57  Identities=16%  Similarity=0.195  Sum_probs=48.1

Q ss_pred             ccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       155 ~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      -++-|+|-..  ++.++.+.++++|+..|.++++..+|+.|.  ++++|++|..|+++.+.
T Consensus         5 ~~v~~~m~~~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~   61 (128)
T 3gby_A            5 VTFSYLAETD--YPVFTLGGSTADAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRK   61 (128)
T ss_dssp             CBGGGGCBCC--SCCEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCS
T ss_pred             eEHHHhhcCC--cceECCCCCHHHHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHh
Confidence            4555666433  677888999999999999999999999998  89999999999987553

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=95.83  E-value=0.0083  Score=48.39  Aligned_cols=52  Identities=15%  Similarity=0.306  Sum_probs=45.8

Q ss_pred             eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhcc
Q 024154          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGT  219 (271)
Q Consensus       167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~~  219 (271)
                      ++.+..+.++.+|+..|.++++..+|+.|. .++++|++|..|+++.+.....
T Consensus       108 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dil~~~~~~~~  159 (180)
T 3sl7_A          108 PLVVRDSTNLEDAARLLLETKFRRLPVVDA-DGKLIGILTRGNVVRAALQIKR  159 (180)
T ss_dssp             CCCEETTSBHHHHHHHHTTSTTCEEEEECT-TCBEEEEEEHHHHHHHHHHHHH
T ss_pred             ceEeCCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHHHHhh
Confidence            466788889999999999999999999985 4799999999999998877654

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=95.81  E-value=0.011  Score=47.93  Aligned_cols=52  Identities=12%  Similarity=0.255  Sum_probs=46.8

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhcc
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGT  219 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~~  219 (271)
                      .++.+..+.++..|+..|.++++..+|+-|  .++++||+|..|++..+.....
T Consensus       117 ~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd--~g~~vGiit~~dll~~l~~~~~  168 (185)
T 2j9l_A          117 SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITKKDVLKHIAQMAN  168 (185)
T ss_dssp             SCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHHHCC
T ss_pred             CCeEeCCCCCHHHHHHHHHhCCCcEEEEEE--CCEEEEEEEHHHHHHHHHHhhc
Confidence            577888889999999999999999999999  6899999999999998876654

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=95.75  E-value=0.012  Score=50.74  Aligned_cols=58  Identities=21%  Similarity=0.394  Sum_probs=49.0

Q ss_pred             cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      ++-|+|  +.+++.+..+.++++|+..|.++++...|+.|.+ ++++|++|..|++..+..
T Consensus         8 ~v~~im--~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-~~l~Giit~~di~~~~~~   65 (245)
T 3l2b_A            8 KVEDLE--MDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN-NHLLGMLSTSNITATYMD   65 (245)
T ss_dssp             BGGGSC--CBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHHC
T ss_pred             cHHHhc--CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHH
Confidence            455665  3457888899999999999999999999999965 789999999999987653

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=95.74  E-value=0.0054  Score=48.63  Aligned_cols=63  Identities=21%  Similarity=0.275  Sum_probs=50.9

Q ss_pred             hhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       152 l~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      |...++-|++-...+++.+..+.++..|+..|.++++..+|+-|. .++++|++|..|++..+.
T Consensus         8 l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~   70 (157)
T 2emq_A            8 FMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT-SYKLHGLISMTMMMDAIL   70 (157)
T ss_dssp             --CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT-TCCEEEEEEHHHHHHHSB
T ss_pred             HhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC-CCCEEEEeeHHHHHHHHh
Confidence            345566676644447788899999999999999999999999997 478999999999987553

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=95.73  E-value=0.011  Score=44.67  Aligned_cols=57  Identities=21%  Similarity=0.356  Sum_probs=46.6

Q ss_pred             cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      +.-+++-  ..++.++.+.++.+|+..|.++++...|+-|.. ++++|++|..|++..|.
T Consensus        63 ~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~-g~~~Givt~~dl~~~l~  119 (122)
T 3kpb_A           63 TIEEIMT--RNVITAHEDEPVDHVAIKMSKYNISGVPVVDDY-RRVVGIVTSEDISRLFG  119 (122)
T ss_dssp             BGGGTSB--SSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHC
T ss_pred             CHHHHhc--CCCeEECCCCCHHHHHHHHHHhCCCeEEEECCC-CCEEEEEeHHHHHHHhh
Confidence            3444442  256778888899999999999999999999864 78999999999998764

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=95.73  E-value=0.013  Score=44.28  Aligned_cols=50  Identities=20%  Similarity=0.476  Sum_probs=44.5

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      .++.++.+.+++.|+..|.++++..+|+-|. .++++|++|..|++..+..
T Consensus        10 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~G~vt~~dl~~~~~~   59 (122)
T 3kpb_A           10 PPITAHSNISIMEAAKILIKHNINHLPIVDE-HGKLVGIITSWDIAKALAQ   59 (122)
T ss_dssp             CCCCEETTSBHHHHHHHHHHHTCSCEEEECT-TSBEEEEECHHHHHHHHHT
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHHHHHHh
Confidence            4677889999999999999999999999994 4889999999999987654

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=95.72  E-value=0.014  Score=45.35  Aligned_cols=49  Identities=8%  Similarity=0.156  Sum_probs=43.1

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      +++.+..+.++.+|+..|.++++..+|+-|.. ++++|++|..|++..|.
T Consensus        78 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~-g~lvGiit~~Dil~~l~  126 (130)
T 3hf7_A           78 EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILEEIV  126 (130)
T ss_dssp             CCCEEETTCBHHHHHHHHHHHCCCEEEEECTT-SCEEEEEEHHHHHHHHH
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCC-CCEEEEeeHHHHHHHHh
Confidence            45677888999999999999999999998854 78999999999998764

>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A

Probab=95.69  E-value=0.02  Score=57.48  Aligned_cols=56  Identities=29%  Similarity=0.489  Sum_probs=46.7

Q ss_pred             cceEEEEEecC----CCceEEEEeccC---CCCC--CC-CCCC---CCCCCCeEEEEEecCCc-eEEEEEEE
Q 024154           19 ILVPVRFIWPN----GGRRVSLSGSFT---RWSE--PM-PMSP---SEGCPAVFQIICRLPPG-HHQYKFYV   76 (271)
Q Consensus        19 ~~vpVtF~w~~----~ak~V~V~GsF~---nW~~--~i-pM~k---~~~~~g~f~~~~~LppG-~yeYKFiV   76 (271)
                      ..++|+|+...    .++.|+|+|+-.   +|++  .+ +|..   .+  ...|++++.||+| ..||||++
T Consensus       582 ~~v~v~f~v~~~~~~~g~~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~--~~~W~~~v~lp~~~~~eyK~~~  651 (683)
T 3bmv_A          582 NQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQ--YPTWYYDVSVPAGTTIQFKFIK  651 (683)
T ss_dssp             SEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSC--TTSEEEEEEEETTCEEEEEEEE
T ss_pred             CeEEEEEEEEeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccCCCC--CCcEEEEEEeCCCCcEEEEEEE
Confidence            56889999976    478999999987   8986  46 7876   33  5799999999887 69999998

>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*

Probab=95.68  E-value=0.0065  Score=59.91  Aligned_cols=59  Identities=20%  Similarity=0.251  Sum_probs=45.0

Q ss_pred             cceEEEEE-ecCCCceEEE-EeccCCCCC------CCCCCCCC--CCCCeEEEEEecCCceEEEEEEEc
Q 024154           19 ILVPVRFI-WPNGGRRVSL-SGSFTRWSE------PMPMSPSE--GCPAVFQIICRLPPGHHQYKFYVD   77 (271)
Q Consensus        19 ~~vpVtF~-w~~~ak~V~V-~GsF~nW~~------~ipM~k~~--~~~g~f~~~~~LppG~yeYKFiVD   77 (271)
                      ..+.++|+ |...+++|.| +|+|++|..      .++|.+.+  +..++|++.+........|+|.|.
T Consensus        21 ~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~w~~~v~~~~~~~~Y~f~i~   89 (588)
T 1j0h_A           21 ETLHLRLRTKKDDIDRVELLHGDPYDWQNGAWQFQMMPMRKTGSDELFDYWFAEVKPPYRRLRYGFVLY   89 (588)
T ss_dssp             SCEEEEEEEETTTCSEEEEEEECTTCEETTEECCEEEECEEEEECSSEEEEEEEECCTTSCEEEEEEEE
T ss_pred             CEEEEEEEECCCCccEEEEEECCCCCccccccceEEEEeEEeecCCCeEEEEEEEECCCcEEEEEEEEE
Confidence            45777775 5668999999 699999864      47998753  223579999987777788999885

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=95.66  E-value=0.019  Score=45.81  Aligned_cols=49  Identities=14%  Similarity=0.262  Sum_probs=45.1

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCe-eccccCCCCceeeeechHHHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPM-VPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~-aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      .+++.++.+.++.+|+..|.++++.. +|+-|..  +++|++|..|++..+.
T Consensus        24 ~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~--~~vGivt~~dl~~~~~   73 (157)
T 1o50_A           24 LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN--KLVGMIPVMHLLKVSG   73 (157)
T ss_dssp             CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT--EEEEEEEHHHHHHHHH
T ss_pred             CCCceECCCCCHHHHHHHHHhCCCCccEEEEECC--EEEEEEEHHHHHHHHh
Confidence            47899999999999999999999999 9999976  9999999999998764

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=95.64  E-value=0.012  Score=45.26  Aligned_cols=47  Identities=15%  Similarity=0.243  Sum_probs=41.5

Q ss_pred             eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      .+.+..+.++.+|+..|.++++..+|+-|. .++++|++|.+|+++.|
T Consensus        78 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~Giit~~dll~~l  124 (127)
T 3nqr_A           78 AVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELI  124 (127)
T ss_dssp             CCEEETTCBHHHHHHHHHHTTCCEEEEECT-TSCEEEEEEHHHHHHHC
T ss_pred             CeEECCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHH
Confidence            456778889999999999999999999985 47899999999999865

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=95.63  E-value=0.011  Score=46.92  Aligned_cols=51  Identities=18%  Similarity=0.360  Sum_probs=45.5

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhc
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG  218 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~  218 (271)
                      .++.++.+.++.+|+..|.++++...|+-|  .++++|++|..|+++.+..-.
T Consensus        87 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dil~~l~~~~  137 (157)
T 4fry_A           87 KVRYVEPSQSTDECMALMTEHRMRHLPVLD--GGKLIGLISIGDLVKSVIADQ  137 (157)
T ss_dssp             SCCCBCTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHTTC
T ss_pred             CCcEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHHHHH
Confidence            567788889999999999999999999999  489999999999999876544

>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*

Probab=95.63  E-value=0.036  Score=55.36  Aligned_cols=58  Identities=21%  Similarity=0.294  Sum_probs=46.3

Q ss_pred             cceEEEEEecC---CCceEEEEeccC---CCCCC--CCCCCCCC--CCCeEEEEEecCCc-eEEEEEEE
Q 024154           19 ILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSEG--CPAVFQIICRLPPG-HHQYKFYV   76 (271)
Q Consensus        19 ~~vpVtF~w~~---~ak~V~V~GsF~---nW~~~--ipM~k~~~--~~g~f~~~~~LppG-~yeYKFiV   76 (271)
                      ..+.|+|...+   -+++|+|+|+-.   +|++.  ++|...+-  .+..|++++.||+| .++|||+|
T Consensus       495 ~~v~v~F~v~~~t~~Ge~l~vvGs~~~LG~W~~~~a~~L~~~~~t~~~~~W~~~v~lp~~~~~eYKyvv  563 (599)
T 2vn4_A          495 TSVAVTFHELVSTQFGQTVKVAGNAAALGNWSTSAAVALDAVNYADNHPLWIGTVNLEAGDVVEYKYIN  563 (599)
T ss_dssp             SEEEEEEEEECCCCTTCEEEEEESSGGGTTTCTTTSEECBCTTCBTTBCEEEEEEEEETTCEEEEEEEE
T ss_pred             CeEEEEEEEeEEcCCCCEEEEEecccCCCCcChhheeecccccCCCCCCcEEEEEEcCCCCcEEEEEEE
Confidence            35789999986   488999999886   79874  58887541  12689999999988 59999998

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=95.60  E-value=0.016  Score=46.01  Aligned_cols=50  Identities=16%  Similarity=0.233  Sum_probs=44.8

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      ..++.++.+.++++|+..|.++++..+|+ +. .++++|++|..|++..+..
T Consensus        21 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~V-~~-~~~~~Givt~~dl~~~~~~   70 (157)
T 4fry_A           21 RTIYTVTKNDFVYDAIKLMAEKGIGALLV-VD-GDDIAGIVTERDYARKVVL   70 (157)
T ss_dssp             CCCCEEETTSBHHHHHHHHHHHTCSEEEE-ES-SSSEEEEEEHHHHHHHSGG
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEE-ee-CCEEEEEEEHHHHHHHHHh
Confidence            66789999999999999999999999999 53 7899999999999986644

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=95.58  E-value=0.016  Score=44.73  Aligned_cols=49  Identities=18%  Similarity=0.344  Sum_probs=43.1

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      .++.+..+.++.+|+..|.++++..+|+-|.. ++++|++|.+|+++.|.
T Consensus        80 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~-g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           80 PIQVVLNNTALPKVFDQMMTHRLQLALVVDEY-GTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             ECCEEETTSCHHHHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHHH
T ss_pred             CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCC-CCEEEEEEHHHHHHHHc
Confidence            35678888899999999999999999999854 78999999999998764

>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1

Probab=95.55  E-value=0.024  Score=56.92  Aligned_cols=56  Identities=27%  Similarity=0.481  Sum_probs=46.5

Q ss_pred             cceEEEEEecC----CCceEEEEeccC---CCCCC--C-CCCC---CCCCCCeEEEEEecCCc-eEEEEEEE
Q 024154           19 ILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--M-PMSP---SEGCPAVFQIICRLPPG-HHQYKFYV   76 (271)
Q Consensus        19 ~~vpVtF~w~~----~ak~V~V~GsF~---nW~~~--i-pM~k---~~~~~g~f~~~~~LppG-~yeYKFiV   76 (271)
                      ..++|+|+..+    .++.|+|+|+-.   +|++.  + +|..   .+  ...|++++.||+| .+||||++
T Consensus       578 ~~v~v~f~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~--~~~W~~~v~lp~~~~~eyK~v~  647 (680)
T 1cyg_A          578 DQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYS--YPTWYIDVSVPEGKTIEFKFIK  647 (680)
T ss_dssp             CEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSC--TTCEEEEEEEESSCEEEEEEEE
T ss_pred             CeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCC--CCcEEEEEEeCCCCcEEEEEEE
Confidence            56899999975    378999999887   89864  5 7876   33  5799999999887 69999998

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=95.55  E-value=0.016  Score=44.54  Aligned_cols=60  Identities=15%  Similarity=0.311  Sum_probs=48.3

Q ss_pred             cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhc
Q 024154          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG  218 (271)
Q Consensus       156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~  218 (271)
                      +.-+++-.  .++.++.+.++..|+..|.++++..+|+-|.. ++++|++|..|++..+....
T Consensus        68 ~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~-g~~~Giit~~dll~~~~~~~  127 (133)
T 2ef7_A           68 KAEEFMTA--SLITIREDSPITGALALMRQFNIRHLPVVDDK-GNLKGIISIRDITRAIDDMF  127 (133)
T ss_dssp             BGGGTSEE--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHC
T ss_pred             CHHHHcCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHHHHH
Confidence            44444422  56777888899999999999999999999854 78999999999998776543

>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*

Probab=95.53  E-value=0.016  Score=58.70  Aligned_cols=65  Identities=22%  Similarity=0.345  Sum_probs=48.2

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCC-CCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc--Cee--ecCCCCCee
Q 024154           22 PVRFI-WPNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD--GEW--RHDENQPHV   89 (271)
Q Consensus        22 pVtF~-w~~~ak~V~V~GsF~nW~~-~ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVD--G~W--~~Dp~~P~v   89 (271)
                      .|+|+ |...|+.|.|++.+++|.. .++|.+.+  .|+|++.+. +.+|. .|+|.|+  |.|  ..||....+
T Consensus       114 ~~~f~vwap~a~~V~l~~~~~~~~~~~~~m~~~~--~g~w~~~v~~~~~g~-~Y~f~v~~~g~~~~~~DPya~~~  185 (718)
T 2e8y_A          114 HTVFKVWAPAATSAAVKLSHPNKSGRTFQMTRLE--KGVYAVTVTGDLHGY-EYLFCICNNSEWMETVDQYAKAV  185 (718)
T ss_dssp             EEEEEEECTTCSEEEEEEECTTSCCEEEECEECG--GGEEEEEEESCCTTC-EEEEEEEETTEEEEECCTTCSSB
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCcceEEeCccCC--CCEEEEEECCCCCCC-eEEEEEEeCCeEEEecCCccccc
Confidence            47775 6678999999999988864 37999865  689999987 45663 5666665  764  678876554

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=95.47  E-value=0.012  Score=46.04  Aligned_cols=56  Identities=16%  Similarity=0.208  Sum_probs=45.9

Q ss_pred             cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      ++-+++-   +++.+..+.++.+|+..|.++++..+|+-|.. ++++|++|..|+++.|.
T Consensus        71 ~v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~-g~lvGiit~~Dil~~l~  126 (136)
T 3lfr_A           71 DVKKLLR---PATFVPESKRLNVLLREFRANHNHMAIVIDEY-GGVAGLVTIEDVLEQIV  126 (136)
T ss_dssp             CGGGTCB---CCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHTTC-
T ss_pred             CHHHHcC---CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHHHh
Confidence            3445552   37788888999999999999999999999854 78999999999997553

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=95.46  E-value=0.014  Score=46.61  Aligned_cols=49  Identities=22%  Similarity=0.521  Sum_probs=43.7

Q ss_pred             eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      ++.++.+.++.+|+..|.++++...|+-|. .++++|++|..|++..+..
T Consensus       105 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dll~~l~~  153 (157)
T 1o50_A          105 PVYVHMDTPLEEALKLMIDNNIQEMPVVDE-KGEIVGDLNSLEILLALWK  153 (157)
T ss_dssp             CCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHH
T ss_pred             CeEECCCCCHHHHHHHHHHCCCcEEEEEcC-CCEEEEEEEHHHHHHHHHH
Confidence            677888899999999999999999999984 4789999999999987653

>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...

Probab=95.43  E-value=0.028  Score=56.44  Aligned_cols=56  Identities=30%  Similarity=0.511  Sum_probs=46.3

Q ss_pred             cceEEEEEecC----CCceEEEEeccC---CCCCC--C-CCCC---CCCCCCeEEEEEecCCc-eEEEEEEE
Q 024154           19 ILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--M-PMSP---SEGCPAVFQIICRLPPG-HHQYKFYV   76 (271)
Q Consensus        19 ~~vpVtF~w~~----~ak~V~V~GsF~---nW~~~--i-pM~k---~~~~~g~f~~~~~LppG-~yeYKFiV   76 (271)
                      ..+.|+|+..+    .++.|+|+|+-.   +|++.  + +|..   ..  ...|++++.||+| ..||||++
T Consensus       585 ~~v~v~f~v~~~~~~~g~~~~v~G~~~~LG~W~~~~a~~~l~~~~~~~--~~~W~~~v~lp~~~~~eyK~~~  654 (686)
T 1d3c_A          585 DQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQ--YPNWYYDVSVPAGKTIEFKFLK  654 (686)
T ss_dssp             SEEEEEEEEECCCCCTTCEEEEEESSGGGTTTCGGGCBCCCBCSSSSC--TTCEEEEEEEETTCEEEEEEEE
T ss_pred             CeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCC--CCeEEEEEEeCCCCcEEEEEEE
Confidence            56899999975    378999999987   89863  5 6775   33  5799999999887 69999998

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=95.43  E-value=0.015  Score=44.93  Aligned_cols=49  Identities=20%  Similarity=0.409  Sum_probs=42.5

Q ss_pred             CeEEEcccchHHHHHHHHHHcC-----CCeeccccCCCCceeeeechHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQG-----LPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g-----~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      .++.++.+.++.+|+..|.+++     +...|+-|. .++++|++|..|++..+.
T Consensus        82 ~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A           82 DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDK-NNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             SCCCEETTSBHHHHHHHHTCC-----CCCEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             CcEEECCCCCHHHHHHHHHhcCCccccccEEEEECC-CCeEEEEEEHHHHHHHHH
Confidence            5677888889999999999999     999999985 478999999999998664

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=95.42  E-value=0.022  Score=43.99  Aligned_cols=58  Identities=17%  Similarity=0.257  Sum_probs=48.6

Q ss_pred             hhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       152 l~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      |...++-|++-  ..++.+..+.++.+|+..|.++++..+|+-|. .++++|++|..|++.
T Consensus         4 l~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~   61 (138)
T 2yzi_A            4 DMKAPIKVYMT--KKLLGVKPSTSVQEASRLMMEFDVGSLVVIND-DGNVVGFFTKSDIIR   61 (138)
T ss_dssp             CTTSBGGGTCB--CCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHH
T ss_pred             hhhhhHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHH
Confidence            34455666664  46888999999999999999999999999996 488999999999873

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=95.40  E-value=0.011  Score=45.61  Aligned_cols=46  Identities=20%  Similarity=0.298  Sum_probs=42.2

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      .+++.++.+.++.+|+..|.++++..+|+-|  .++++|++|..|++.
T Consensus        17 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~Givt~~dl~~   62 (135)
T 2rc3_A           17 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK--DEKLVGILTERDFSR   62 (135)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHH
T ss_pred             CCcEEECCCCcHHHHHHHHHhcCCCEEEEEE--CCEEEEEEehHHHHH
Confidence            5678888999999999999999999999998  589999999999885

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=95.39  E-value=0.0091  Score=45.93  Aligned_cols=47  Identities=23%  Similarity=0.454  Sum_probs=42.1

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      .++.++.+.++.+|+..|.++++...|+-|.  ++++|++|..|+++.|
T Consensus        83 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~--g~~~Giit~~dil~~l  129 (133)
T 1y5h_A           83 SIYYVDANASIQEMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARHL  129 (133)
T ss_dssp             CCCCEETTCCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHTC
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHH
Confidence            5677888889999999999999999999996  7999999999988643

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=95.32  E-value=0.045  Score=42.92  Aligned_cols=61  Identities=13%  Similarity=0.275  Sum_probs=48.3

Q ss_pred             hccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhcc
Q 024154          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGT  219 (271)
Q Consensus       154 ~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~~  219 (271)
                      ..++-|++-  ..++.+..+.++.+|+..|.++++  .|+-|. .++++|++|..|+++.|.....
T Consensus        86 ~~~v~~~m~--~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~-~g~~~Giit~~dil~~l~~~~~  146 (150)
T 3lqn_A           86 EMKVEQVMK--QDIPVLKLEDSFAKALEMTIDHPF--ICAVNE-DGYFEGILTRRAILKLLNKKVR  146 (150)
T ss_dssp             GCBGGGTCB--SSCCEEETTCBHHHHHHHHHHCSE--EEEECT-TCBEEEEEEHHHHHHHHHHHC-
T ss_pred             cCCHHHHhc--CCCceeCCCCCHHHHHHHHHhCCE--EEEECC-CCcEEEEEEHHHHHHHHHHHhH
Confidence            445556554  356788888999999999999997  777774 4799999999999998876653

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=95.26  E-value=0.006  Score=49.24  Aligned_cols=57  Identities=23%  Similarity=0.370  Sum_probs=46.8

Q ss_pred             ccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       157 cYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      +-|+|-....++.++.+.++..|+..|.++++..+|+.|.. ++++|++|..|+++.+
T Consensus         6 v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~   62 (180)
T 3sl7_A            6 VGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDN-WTLVGVVSDYDLLALD   62 (180)
T ss_dssp             HHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHTCC-
T ss_pred             HHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCC-CeEEEEEEHHHHHhhh
Confidence            33444443467788899999999999999999999999875 7899999999998643

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=95.25  E-value=0.01  Score=47.44  Aligned_cols=61  Identities=21%  Similarity=0.307  Sum_probs=48.7

Q ss_pred             hccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       154 ~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      ..++-|++-....++.++.+.++.+|+..|.++++..+|+-|.. ++++|++|..|++..+.
T Consensus        13 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~   73 (159)
T 1yav_A           13 EATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIF   73 (159)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHB
T ss_pred             HhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCC-CCEEEEeEHHHHHHHhh
Confidence            34444554332357778889999999999999999999999975 58999999999987663

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=95.25  E-value=0.024  Score=46.75  Aligned_cols=50  Identities=12%  Similarity=0.212  Sum_probs=44.7

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      ..++.+..+.++..|+..|.++++..+|+-|. .++++||+|..|++..|.
T Consensus       107 ~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde-~g~lvGiIT~~Dil~~l~  156 (173)
T 3ocm_A          107 RDPIIVHESIGILRLMDTLKRSRGQLVLVADE-FGAIEGLVTPIDVFEAIA  156 (173)
T ss_dssp             BCCCEECGGGCHHHHHHHHHHSTTCCEEEECT-TCCEEEEECHHHHHHHHH
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCeEEEEEeC-CCCEEEEEeHHHHHHHHh
Confidence            45678899999999999999999999999985 478999999999998775

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=95.24  E-value=0.025  Score=44.07  Aligned_cols=58  Identities=19%  Similarity=0.148  Sum_probs=48.0

Q ss_pred             cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCC-CCceeeeechHHHHHHHH
Q 024154          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF-KGRFVGVLSALDFILILR  215 (271)
Q Consensus       156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~-~~~f~G~lt~tD~i~il~  215 (271)
                      ++-|+|-  .+++.+..+.++.+|+..|.++++..+|+-|.+ ..+++|++|..|++..+.
T Consensus         6 ~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~   64 (141)
T 2rih_A            6 RTSELLK--RPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVA   64 (141)
T ss_dssp             BGGGGCC--SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHH
T ss_pred             EHHHHhc--CCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHh
Confidence            3444442  368889999999999999999999999999975 238999999999998664

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=95.20  E-value=0.0092  Score=45.91  Aligned_cols=50  Identities=24%  Similarity=0.325  Sum_probs=43.3

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      .++.+..+.++.+|+..|.++++...|+-|. .++++|++|..|+++.|..
T Consensus        77 ~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~g~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           77 TVRSYRPGEQLFDNLISVAAAKCSVVPLADE-DGRYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             CCCCBCTTSBGGGSHHHHHHCSSSEEEEECT-TCBEEEEEEHHHHHHHHHT
T ss_pred             CCcEECCCCCHHHHHHHHHhCCCcEEEEECC-CCCEEEEEEHHHHHHHHHh
Confidence            4556778888999999999999999999984 5789999999999988754

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=95.19  E-value=0.0066  Score=49.35  Aligned_cols=57  Identities=18%  Similarity=0.283  Sum_probs=46.4

Q ss_pred             hccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       154 ~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      ..++-++|-  ..++.+.-+-++.+|+..|.++++...|+-|  .++++||+|.+|+++.|
T Consensus       104 ~~~v~~im~--~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd--~g~lvGivt~~Dil~~l  160 (170)
T 4esy_A          104 KLTASAVMT--QPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ--DGVPVGIVTRRDLLKLL  160 (170)
T ss_dssp             TCBHHHHCB--CCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHTTTS
T ss_pred             ccchhhhcc--cCcccCCcchhHHHHHHHHHHcCCcEEEEEE--CCEEEEEEEHHHHHHHH
Confidence            334444442  3567788889999999999999999999998  38999999999998754

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=95.06  E-value=0.021  Score=45.79  Aligned_cols=58  Identities=17%  Similarity=0.288  Sum_probs=48.0

Q ss_pred             cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      ++-|+|-  ..++.+..+.++..|+..|.++++..+|+-|.. ++++|++|..|++..+..
T Consensus         6 ~v~dim~--~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~   63 (160)
T 2o16_A            6 KVEDMMT--RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQES   63 (160)
T ss_dssp             BGGGTSE--ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHH
T ss_pred             cHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHH
Confidence            3445442  257778889999999999999999999999964 789999999999987764

>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*

Probab=95.05  E-value=0.023  Score=60.49  Aligned_cols=67  Identities=18%  Similarity=0.198  Sum_probs=49.3

Q ss_pred             EEEEE-ecCCCceEEEEe-ccCCCCC-CCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc------C----eeecCCCCC
Q 024154           22 PVRFI-WPNGGRRVSLSG-SFTRWSE-PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD------G----EWRHDENQP   87 (271)
Q Consensus        22 pVtF~-w~~~ak~V~V~G-sF~nW~~-~ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVD------G----~W~~Dp~~P   87 (271)
                      -|+|+ |...|++|.|++ ++++|.. .++|.+.. ..|+|++.+. +.+|.+ |+|.|+      |    ..+.||...
T Consensus       305 gv~F~vwAP~A~~V~L~l~d~~~~~~~~~~m~~~~-~~GvW~~~v~~~~~G~~-Y~y~v~~~~p~~g~~~~~~~~DPYa~  382 (1083)
T 2fhf_A          305 GVTFRVWAPTAQQVELVIYSADKKVIASHPMTRDS-ASGAWSWQGGSDLKGAF-YRYAMTVYHPQSRKVEQYEVTDPYAH  382 (1083)
T ss_dssp             EEEEEEECTTCSEEEEEEECTTCCEEEEEECEECT-TTCEEEEEECGGGTTCE-EEEEEEEEETTTTEEEEEEECCTTCS
T ss_pred             eEEEEEECCCCCEEEEEEEcCCCCccceEECeECC-CCCEEEEEECCCCCCCE-EEEEEEeecCCCCccccceecCCccc
Confidence            46776 677899999999 8999964 47898543 2689999986 777864 777775      3    347788766


Q ss_pred             eee
Q 024154           88 HVS   90 (271)
Q Consensus        88 ~v~   90 (271)
                      .+.
T Consensus       383 ~~~  385 (1083)
T 2fhf_A          383 SLS  385 (1083)
T ss_dssp             CBC
T ss_pred             eec
Confidence            544

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=94.95  E-value=0.032  Score=49.53  Aligned_cols=62  Identities=18%  Similarity=0.270  Sum_probs=53.6

Q ss_pred             hccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCC-CCceeeeechHHHHHHHHHh
Q 024154          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF-KGRFVGVLSALDFILILREL  217 (271)
Q Consensus       154 ~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~-~~~f~G~lt~tD~i~il~~~  217 (271)
                      .-++-|+|  +..++.+..+.++.+|...|.++++...|+=|.. .+.++|++|-+|++..|...
T Consensus        12 ~~~v~diM--t~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~   74 (250)
T 2d4z_A           12 NIQVGDIM--VRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRR   74 (250)
T ss_dssp             SCBTTSSS--BSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHH
T ss_pred             CCChHHhc--CCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHh
Confidence            34566777  4579999999999999999999999999999986 47899999999999987654

>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*

Probab=94.77  E-value=0.04  Score=55.70  Aligned_cols=66  Identities=14%  Similarity=0.261  Sum_probs=48.7

Q ss_pred             EEEE-ecCCCceEEEEe-ccCCCCC---CCCCCCCCCCCCeEEEEEec-C-Cc-----eEEEEEEEc--Ce--eecCCCC
Q 024154           23 VRFI-WPNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICRL-P-PG-----HHQYKFYVD--GE--WRHDENQ   86 (271)
Q Consensus        23 VtF~-w~~~ak~V~V~G-sF~nW~~---~ipM~k~~~~~g~f~~~~~L-p-pG-----~yeYKFiVD--G~--W~~Dp~~   86 (271)
                      |+|+ |...|++|.|++ ++++|..   .++|.+.+  .|+|++.+.- . +|     -+.|+|.|+  |.  ...||..
T Consensus        26 v~F~vwap~A~~V~l~l~~~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~~g~~~~~g~~Y~y~v~~~~~~~~~~DPya  103 (714)
T 2ya0_A           26 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKGE--RGTWKQTLDSTNKLGITDFTGYYYQYQIERQGKTVLALDPYA  103 (714)
T ss_dssp             EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEECG--GGEEEEEECTTCSSSCSCCTTCEEEEEEEETTEEEEECCTTC
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCccceEEeCccCC--CCEEEEEECCccCCCccccCCcEEEEEEEeCCceEEecCCce
Confidence            6776 677899999999 8888864   47898754  6899998863 1 34     267888886  53  4688877


Q ss_pred             Ceee
Q 024154           87 PHVS   90 (271)
Q Consensus        87 P~v~   90 (271)
                      ..+.
T Consensus       104 ~~~~  107 (714)
T 2ya0_A          104 KSLA  107 (714)
T ss_dssp             SEEC
T ss_pred             eeec
Confidence            6543

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=94.75  E-value=0.022  Score=49.01  Aligned_cols=61  Identities=15%  Similarity=0.227  Sum_probs=47.2

Q ss_pred             hhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       152 l~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      .+..++-|+|-. ..++.+..+.++..|+..|.+++++..|+-|.+ ++++||+|..|+++..
T Consensus       182 ~~~~~v~~im~~-~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          182 VQSLPVDYVMTK-DNLVAVSTDDLVEDVKVTMSETRYSNYPVIDEN-NKVVGSIARFHLISTH  242 (245)
T ss_dssp             GGGSBHHHHSBC-TTCCCEETTSBHHHHHHHHHHHCCSEEEEECTT-CBEEEEEECC------
T ss_pred             hcCCceeeEecC-CccEEECCCCcHHHHHHHHHhcCCceEEEEcCC-CeEEEEEEHHHhhchh
Confidence            445667777732 678889999999999999999999999999876 8999999999998653

>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A

Probab=94.75  E-value=0.022  Score=57.92  Aligned_cols=65  Identities=14%  Similarity=0.066  Sum_probs=43.9

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCCC--CCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCe----------eecCCCCC
Q 024154           22 PVRFI-WPNGGRRVSLSGSFTRWSEPM--PMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE----------WRHDENQP   87 (271)
Q Consensus        22 pVtF~-w~~~ak~V~V~GsF~nW~~~i--pM~k~~~~~g~f~~~~~-LppG~yeYKFiVDG~----------W~~Dp~~P   87 (271)
                      -|+|+ |...|++|.|++-+++|....  +|.+.+  .|+|++.+. +.+|. .|+|.|++.          ...||...
T Consensus       137 g~~F~vwAp~A~~V~l~l~~~~~~~~~~~~~~~~~--~g~W~~~~~~~~~g~-~Y~y~v~~~~~~~~~~~~~~~~DPya~  213 (884)
T 4aio_A          137 SVSLHLWAPTAQGVSVCFFDGPAGPALETVQLKES--NGVWSVTGPREWENR-YYLYEVDVYHPTKAQVLKCLAGDPYAR  213 (884)
T ss_dssp             EEEEEEECTTCSEEEEEEESTTTSCEEEEEECEEE--TTEEEEEEEGGGTTC-EEEEEEEEEETTTTEEEEEEECCTTCS
T ss_pred             EEEEEEECCCCCEEEEEEEeCCCCCeeeeeeecCC--CCEEEEEECCCCCCC-EEEEEEeCCCCCcccccCccccCCCee
Confidence            47787 778899999999655565432  233333  699999987 56675 488888652          34577665


Q ss_pred             ee
Q 024154           88 HV   89 (271)
Q Consensus        88 ~v   89 (271)
                      .+
T Consensus       214 ~~  215 (884)
T 4aio_A          214 SL  215 (884)
T ss_dssp             EE
T ss_pred             ee
Confidence            44

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=94.75  E-value=0.014  Score=44.88  Aligned_cols=46  Identities=22%  Similarity=0.376  Sum_probs=41.4

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      +++.+..+.++.+|+..|.++++..+|+-|.+ ++++|++|..|++.
T Consensus        17 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~   62 (133)
T 1y5h_A           17 GVTCVGEHETLTAAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVI   62 (133)
T ss_dssp             TCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHH
T ss_pred             CceEeCCCCCHHHHHHHHHHhCCCeEEEECCC-CeEEEEEeHHHHHH
Confidence            56778889999999999999999999999864 88999999999873

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=94.74  E-value=0.032  Score=47.39  Aligned_cols=52  Identities=23%  Similarity=0.256  Sum_probs=45.9

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhc
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG  218 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~  218 (271)
                      .++.++.+.++.+|+..|.++++...|+-|.. ++++|++|..|++..+....
T Consensus        81 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~Dil~~~~~~~  132 (213)
T 1vr9_A           81 PDFFVHEEDNITHALLLFLEHQEPYLPVVDEE-MRLKGAVSLHDFLEALIEAL  132 (213)
T ss_dssp             TTCCEETTSBHHHHHHHHHHCCCSEEEEECTT-CBEEEEEEHHHHHHHHHHSC
T ss_pred             CCEEECCCCcHHHHHHHHHHhCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHHh
Confidence            56778888899999999999999999999954 89999999999999877644

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=94.64  E-value=0.04  Score=47.30  Aligned_cols=60  Identities=18%  Similarity=0.349  Sum_probs=50.6

Q ss_pred             ccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       155 ~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      .+.-|++-.  +++.++.+.++.+|+..|.++++..+|+.|.. ++++|++|..|++..+...
T Consensus        84 ~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~  143 (280)
T 3kh5_A           84 EPVREIMEE--NVITLKENADIDEAIETFLTKNVGGAPIVNDE-NQLISLITERDVIRALLDK  143 (280)
T ss_dssp             SBGGGTSBC--SCCCEETTCBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHGGG
T ss_pred             hhHHHhcCC--CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCC-CEEEEEEEHHHHHHHHhhc
Confidence            355555543  78888999999999999999999999999865 8899999999999876544

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=94.61  E-value=0.069  Score=42.04  Aligned_cols=60  Identities=17%  Similarity=0.290  Sum_probs=48.0

Q ss_pred             ccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhcc
Q 024154          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGT  219 (271)
Q Consensus       155 ~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~~  219 (271)
                      .++-+++-.  .++.++.+.++..|+..|.++++  +|+-|. .++++|++|.+|++..+.....
T Consensus        83 ~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~-~g~~~Giit~~dil~~~~~~~~  142 (157)
T 2emq_A           83 MKVEEVMNR--NIPRLRLDDSLMKAVGLIVNHPF--VCVEND-DGYFAGIFTRREVLKQLNKQLH  142 (157)
T ss_dssp             CBGGGTCBC--CCCEEETTSBHHHHHHHHHHSSE--EEEECS-SSSEEEEEEHHHHHHHHHHTTC
T ss_pred             CcHHHHhCC--CCceecCCCcHHHHHHHHhhCCE--EEEEcC-CCeEEEEEEHHHHHHHHHHHhh
Confidence            345555433  56788888999999999999998  888875 4789999999999998876654

>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A

Probab=94.60  E-value=0.048  Score=53.52  Aligned_cols=57  Identities=16%  Similarity=0.269  Sum_probs=44.9

Q ss_pred             cceEEEEEecC----CCceEEEEeccC---CCCCC---CCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 024154           19 ILVPVRFIWPN----GGRRVSLSGSFT---RWSEP---MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (271)
Q Consensus        19 ~~vpVtF~w~~----~ak~V~V~GsF~---nW~~~---ipM~k~~~~~g~f~~~~~LppG-~yeYKFiV   76 (271)
                      ..+.|+|+..+    -|++|.|+|+-.   +|++.   .+|.... .++.|++++.||+| ..+|||++
T Consensus       418 ~~v~V~F~v~~~~t~~Ge~v~vvGs~~eLG~W~~~~a~~~l~~~~-~p~~W~~~v~lp~~~~~eYKyv~  485 (516)
T 1vem_A          418 TPVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYDS-HSNDWRGNVVLPAERNIEFKAFI  485 (516)
T ss_dssp             CEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEET-TTTEEEEEEEEETTCCEEEEEEE
T ss_pred             CccceEEEEeeccCCCCCEEEEEeChhhhCCCChhhhceecccCC-CCCEEEEEEEECCCCcEEEEEEE
Confidence            45889999865    389999999886   79875   3576522 13599999999887 49999998

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=94.57  E-value=0.041  Score=46.85  Aligned_cols=61  Identities=21%  Similarity=0.269  Sum_probs=49.5

Q ss_pred             cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhcc
Q 024154          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGT  219 (271)
Q Consensus       156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~~  219 (271)
                      ++-|+|-  ..++.+..+.++..|+..|.++++.++|+=|. .++++|++|..|+++.|..-+.
T Consensus       117 ~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~-~g~lvGiIT~~Dil~~i~~e~~  177 (205)
T 3kxr_A          117 PLISLLS--EDSRALTANTTLLDAAEAIEHSREIELPVIDD-AGELIGRVTLRAATALVREHYE  177 (205)
T ss_dssp             BGGGGCC--SSCCCEETTSCHHHHHHHHHTSSCSEEEEECT-TSBEEEEEEHHHHHHHHHHHHC
T ss_pred             hHHHHhc--CCCeEECCCCCHHHHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHHHHHHH
Confidence            3444442  24567777888999999999999999999995 4789999999999999976654

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=94.34  E-value=0.046  Score=42.14  Aligned_cols=59  Identities=17%  Similarity=0.353  Sum_probs=47.2

Q ss_pred             cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhc
Q 024154          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG  218 (271)
Q Consensus       156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~  218 (271)
                      ++-+++-  ..++.++.+.++.+|+..|.++++... +-|. .++++|++|..|+++.+....
T Consensus        73 ~v~~~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~-~g~~~Giit~~dil~~~~~~~  131 (138)
T 2yzi_A           73 PVERIMT--RNLITANVNTPLGEVLRKMAEHRIKHI-LIEE-EGKIVGIFTLSDLLEASRRRL  131 (138)
T ss_dssp             BGGGTCB--CSCCEEETTSBHHHHHHHHHHHTCSEE-EEEE-TTEEEEEEEHHHHHHHHHCCS
T ss_pred             CHHHHhh--CCCeEECCCCcHHHHHHHHHhcCCCEE-EECC-CCCEEEEEEHHHHHHHHHHHH
Confidence            3444443  256788888999999999999999988 8884 478999999999998776443

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=94.26  E-value=0.044  Score=44.95  Aligned_cols=56  Identities=25%  Similarity=0.272  Sum_probs=47.3

Q ss_pred             ccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       157 cYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      .-|+|-  ..++.++.+.++.+|+..|.++++..+|+-|.. ++++|++|..|++..+.
T Consensus        11 v~~im~--~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~-g~~vGivt~~dl~~~~~   66 (184)
T 1pvm_A           11 VEKIMN--SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFI   66 (184)
T ss_dssp             GGGTSB--TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTG
T ss_pred             HHHhcC--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHh
Confidence            334442  368889999999999999999999999999865 78999999999987654

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=94.15  E-value=0.0091  Score=51.69  Aligned_cols=49  Identities=12%  Similarity=0.285  Sum_probs=29.7

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      .+++.++.+.++++|+..|.++++..+|++|. .++++|++|..|++..+
T Consensus         9 ~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~-~~~~~Giv~~~dl~~~~   57 (282)
T 2yzq_A            9 QNPVTITLPATRNYALELFKKYKVRSFPVVNK-EGKLVGIISVKRILVNP   57 (282)
T ss_dssp             ESCCCEESSCC------------CCEEEEECT-TCCEEEEEESSCC----
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEHHHHHhhh
Confidence            35778899999999999999999999999997 58999999999988654

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=94.01  E-value=0.041  Score=43.35  Aligned_cols=45  Identities=13%  Similarity=0.175  Sum_probs=40.6

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      .++.+..+.++.+|+..|.++++..+|+-|..  +++|++|..|+++
T Consensus       104 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~Giit~~dil~  148 (149)
T 3k2v_A          104 GGIRIRPGTLAVDALNLMQSRHITCVLVADGD--HLLGVVHMHDLLR  148 (149)
T ss_dssp             SCCEECTTCBHHHHHHHHHHHTCSEEEEEETT--EEEEEEEHHHHTC
T ss_pred             CCeEECCCCCHHHHHHHHHHcCCCEEEEecCC--EEEEEEEHHHhhc
Confidence            35778889999999999999999999999976  9999999999863

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=93.93  E-value=0.048  Score=43.58  Aligned_cols=44  Identities=18%  Similarity=0.244  Sum_probs=39.7

Q ss_pred             eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHH
Q 024154          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (271)
Q Consensus       167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i  211 (271)
                      ++.+..+.++.+|+..|.++++..+|+-|.. ++++||+|.+|++
T Consensus       112 ~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~-g~~~Givt~~Dil  155 (156)
T 3oi8_A          112 AVFVPEGKSLTALLKEFREQRNHMAIVIDEY-GGTSGLVTFEDII  155 (156)
T ss_dssp             CCEEETTSBHHHHHHHHHHTTCCEEEEECTT-SSEEEEEEHHHHC
T ss_pred             CEEECCCCCHHHHHHHHHhcCCeEEEEECCC-CCEEEEEEHHHhc
Confidence            5677888999999999999999999999864 7899999999985

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=93.90  E-value=0.11  Score=45.89  Aligned_cols=49  Identities=22%  Similarity=0.262  Sum_probs=45.1

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      .++.+..+-++..|+..|.++++...|+-|.. ++++|++|.+|+++.|.
T Consensus       271 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~-~~l~Giit~~Dil~~l~  319 (323)
T 3t4n_C          271 GVYTCTKNDKLSTIMDNIRKARVHRFFVVDDV-GRLVGVLTLSDILKYIL  319 (323)
T ss_dssp             CCEEECTTCBHHHHHHHHHHSCCCEEEEECTT-SBEEEEEEHHHHHHHHH
T ss_pred             CCEEECCCCCHHHHHHHHHHhCCCEEEEECCC-CcEEEEEEHHHHHHHHH
Confidence            68999999999999999999999999999854 78999999999999775

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=93.73  E-value=0.063  Score=47.90  Aligned_cols=53  Identities=15%  Similarity=0.295  Sum_probs=46.1

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhcc
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGT  219 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~~  219 (271)
                      .++.+..+.++..|+..|.++++.++|+-|. .++++|++|..|++..+..-..
T Consensus       210 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIT~~Dil~~i~~e~~  262 (286)
T 2oux_A          210 RVISVHVGDDQEDVAQTIRDYDFLAVPVTDY-DDHLLGIVTVDDIIDVIDDEAA  262 (286)
T ss_dssp             CCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHHHHH
T ss_pred             CCeeecCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHHHHHHHhH
Confidence            4667788889999999999999999999985 4799999999999998876543

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=93.71  E-value=0.059  Score=52.40  Aligned_cols=61  Identities=16%  Similarity=0.218  Sum_probs=51.6

Q ss_pred             hccccccCCCCCCeEEEccc-chHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          154 THTVYELLPDSGKVTALDVN-LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       154 ~~tcYd~lP~s~k~vv~D~~-l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      ..+.-|+|-  .+++.++.+ .++++|+..|.++++...|+-|.+.++++||+|..|+++.+..
T Consensus       383 ~~~V~diM~--~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~  444 (527)
T 3pc3_A          383 SLAIAELEL--PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVS  444 (527)
T ss_dssp             TSBGGGGCC--CCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHH
T ss_pred             CCcHHHhCc--CCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHh
Confidence            345556663  478888888 9999999999999999999999667899999999999987764

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=93.70  E-value=0.027  Score=48.65  Aligned_cols=57  Identities=16%  Similarity=0.356  Sum_probs=47.9

Q ss_pred             ccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       155 ~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      .+.-+++.  ..++.+..+-++..|+..|.++++...|+.| +.++++|++|.+|+++.+
T Consensus       221 ~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~lvGiit~~Dil~~~  277 (282)
T 2yzq_A          221 KPVAEIMT--RDVIVATPHMTVHEVALKMAKYSIEQLPVIR-GEGDLIGLIRDFDLLKVL  277 (282)
T ss_dssp             CBGGGTCB--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTTEEEEEEEHHHHGGGG
T ss_pred             CCHHHhcC--CCCceeCCCCCHHHHHHHHHHcCcceeEEEC-CCCCEEEEEeHHHHHHHH
Confidence            44555664  4678899999999999999999999999999 447899999999988644

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=93.70  E-value=0.052  Score=43.17  Aligned_cols=51  Identities=18%  Similarity=0.298  Sum_probs=43.3

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhcc
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGT  219 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~~  219 (271)
                      .++.++.+-++.+|+..|.++++  .|+-|. .++++|++|..|++..+.....
T Consensus        95 ~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~-~g~~vGiit~~dil~~~~~~~~  145 (159)
T 1yav_A           95 DIPRLHINDPIMKGFGMVINNGF--VCVEND-EQVFEGIFTRRVVLKELNKHIR  145 (159)
T ss_dssp             SCCEEETTSBHHHHHHHTTTCSE--EEEECT-TCBEEEEEEHHHHHHHHHHHC-
T ss_pred             CCceEcCCCCHHHHHHHHHhCCE--EEEEeC-CCeEEEEEEHHHHHHHHHHHHH
Confidence            56778888999999999999998  888886 4799999999999998766543

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=93.67  E-value=0.037  Score=44.81  Aligned_cols=61  Identities=15%  Similarity=0.377  Sum_probs=47.1

Q ss_pred             hccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhcc
Q 024154          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGT  219 (271)
Q Consensus       154 ~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~~  219 (271)
                      ..+.-+++-  ..++.+.-+.++.+|+..|.++++  +|+-| +.++++|++|.+|++..+.++..
T Consensus        85 ~~~v~~im~--~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd-~~g~l~GiiT~~Dil~~~~~~~~  145 (156)
T 3k6e_A           85 DTDIVHMTK--TDVAVVSPDFTITEVLHKLVDESF--LPVVD-AEGIFQGIITRKSILKAVNALLH  145 (156)
T ss_dssp             TSBGGGTCB--CSCCCBCTTCCHHHHHHHTTTSSE--EEEEC-TTSBEEEEEEHHHHHHHHHHHSC
T ss_pred             ccCHHHhhc--CCceecccccHHHHHHHHHHHcCC--eEEEe-cCCEEEEEEEHHHHHHHHHHHhc
Confidence            334445443  456677888899999999999986  67766 45899999999999998877643

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=93.66  E-value=0.035  Score=45.53  Aligned_cols=56  Identities=25%  Similarity=0.375  Sum_probs=45.9

Q ss_pred             cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      +.-+++-.  .++.+..+.++.+|+..|.++++..+|+-|.. ++++|++|..|++..+
T Consensus        76 ~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~~~Givt~~dll~~~  131 (184)
T 1pvm_A           76 PIRLVMRK--PIPKVKSDYDVKDVAAYLSENGLERCAVVDDP-GRVVGIVTLTDLSRYL  131 (184)
T ss_dssp             BGGGTSBS--SCCEEETTCBHHHHHHHHHHHTCSEEEEECTT-CCEEEEEEHHHHTTTS
T ss_pred             CHHHHhCC--CCcEECCCCCHHHHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHHHH
Confidence            44444432  56788888899999999999999999999854 7899999999998654

>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A

Probab=93.52  E-value=0.06  Score=53.53  Aligned_cols=58  Identities=12%  Similarity=0.114  Sum_probs=41.5

Q ss_pred             eEEEEE-e----cCCCceEEEEeccCCCCCCCCCCC--CC--CCCCeEEEEEecCCceEEEEEEEcC
Q 024154           21 VPVRFI-W----PNGGRRVSLSGSFTRWSEPMPMSP--SE--GCPAVFQIICRLPPGHHQYKFYVDG   78 (271)
Q Consensus        21 vpVtF~-w----~~~ak~V~V~GsF~nW~~~ipM~k--~~--~~~g~f~~~~~LppG~yeYKFiVDG   78 (271)
                      ..|+|+ |    ...|++|.|++.|++-...++|.+  ..  +..|+|++.+........|+|.|+|
T Consensus        30 ~~v~f~v~~~~~ap~a~~V~l~~~~~~~~~~~~m~~~~~~~~~~~~~w~~~i~~~~~g~~Y~f~i~~   96 (637)
T 1ji1_A           30 QSVTLKLRTFKGDITSANIKYWDTADNAFHWVPMVWDSNDPTGTFDYWKGTIPASPSIKYYRFQIND   96 (637)
T ss_dssp             CCEEEEEEEETTCCSEEEEEEEETTTTEEEEEECEEEEECTTSSEEEEEEEECCCSSCEEEEEEEEE
T ss_pred             CEEEEEEEEecCcCCeeEEEEEEecCCCEEEEEeEEeeccccCCeeEEEEEEECCCceEEEEEEEEE
Confidence            457776 4    356899999999874112378987  32  2247999999876666789999975

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=93.48  E-value=0.075  Score=47.27  Aligned_cols=53  Identities=15%  Similarity=0.228  Sum_probs=47.1

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      ..++.+..+.++.+|+..|.++++..+|+-|...++++|++|..|++..+...
T Consensus       126 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~  178 (330)
T 2v8q_E          126 KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLF  178 (330)
T ss_dssp             CCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHH
T ss_pred             CCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHH
Confidence            45788888999999999999999999999997568999999999999877643

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=93.34  E-value=0.056  Score=47.75  Aligned_cols=59  Identities=20%  Similarity=0.396  Sum_probs=47.7

Q ss_pred             ccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       155 ~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      .+.-++|-  ..++.+..+.++.+|+..|.++++..+|+-|.. ++++|++|..|++..+..
T Consensus       199 ~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          199 TRVAEIMN--PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             CBSTTTSB--SSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHC--
T ss_pred             CcHHHHhC--CCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCC-CeEEEEEEHHHHHHHHHH
Confidence            34455552  357778889999999999999999999999854 799999999999987653

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=93.25  E-value=0.079  Score=46.28  Aligned_cols=61  Identities=11%  Similarity=0.251  Sum_probs=50.0

Q ss_pred             hccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       154 ~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      ..++-+++-.  .++.+..+.++.+|+..|.++++...|+-|.. ++++||+|.+|+++.|..-
T Consensus       226 ~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~-g~~~Giit~~Dil~~l~~~  286 (296)
T 3ddj_A          226 GKVVKDVMVT--NLVTIDELASVNRAAAEMIVKRIGSLLILNKD-NTIRGIITERDLLIALHHI  286 (296)
T ss_dssp             TCBHHHHSBC--CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHH
T ss_pred             CcCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CeEEEEEcHHHHHHHHHHH
Confidence            3444555432  67778889999999999999999999999854 6899999999999988654

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=93.13  E-value=0.12  Score=45.94  Aligned_cols=53  Identities=13%  Similarity=0.121  Sum_probs=46.3

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhc
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG  218 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~  218 (271)
                      ..++.+..+.++..|+..|.++++...|+-|. .++++|++|.+|+++.+....
T Consensus       265 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~l~Giit~~dil~~~~~~~  317 (334)
T 2qrd_G          265 DGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE-NLKLEGILSLADILNYIIYDK  317 (334)
T ss_dssp             CCCCEECTTCBHHHHHHHHHHSCCCEEEEECT-TCBEEEEEEHHHHHHHHHSCC
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEeHHHHHHHHHhcc
Confidence            36788999999999999999999999999984 478999999999998776443

>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*

Probab=92.96  E-value=0.043  Score=57.21  Aligned_cols=65  Identities=15%  Similarity=0.174  Sum_probs=48.8

Q ss_pred             EEEE-ecCCCceEEEEe-ccCCCCC---CCCCCCCCCCCCeEEEEEecCCce-----EEEEEEEcC----eeecCCCCCe
Q 024154           23 VRFI-WPNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICRLPPGH-----HQYKFYVDG----EWRHDENQPH   88 (271)
Q Consensus        23 VtF~-w~~~ak~V~V~G-sF~nW~~---~ipM~k~~~~~g~f~~~~~LppG~-----yeYKFiVDG----~W~~Dp~~P~   88 (271)
                      |+|+ |...|++|.|++ ++++|..   .++|.+.+  .|+|++.+.+.+|.     +.|+|.|++    ....||....
T Consensus       146 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~G~~~~~g~~Y~yrv~~~~~~~~~~DPYA~~  223 (877)
T 3faw_A          146 VEASLWSPSADSVTMIIYDKDNQNRVVATTPLVKNN--KGVWQTILDTKLGIKNYTGYYYLYEIKRGKDKVKILDPYAKS  223 (877)
T ss_dssp             EEEEEECTTCSEEEEEEEETTEEEEEEEEEECEECT--TSEEEEEECGGGTCSCCTTCEEEEEEEETTEEEEECCTTCSC
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCccceeeeccccCC--CCEEEEEECCCCCCccCCCeEEEEEEeeCCceeEecCcccee
Confidence            6776 577899999998 6777853   47998854  79999999776662     678888863    3578888755


Q ss_pred             e
Q 024154           89 V   89 (271)
Q Consensus        89 v   89 (271)
                      +
T Consensus       224 ~  224 (877)
T 3faw_A          224 L  224 (877)
T ss_dssp             B
T ss_pred             c
Confidence            4

>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}

Probab=92.88  E-value=0.1  Score=52.04  Aligned_cols=62  Identities=24%  Similarity=0.398  Sum_probs=47.1

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc-CeeecCCCCCeee
Q 024154           22 PVRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD-GEWRHDENQPHVS   90 (271)
Q Consensus        22 pVtF~-w~~~ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVD-G~W~~Dp~~P~v~   90 (271)
                      -|+|+ |...|++|.|+++   |. ..||.+.+  .|+|.+.+. +.+|. .|+|.|+ |..+.||......
T Consensus        43 ~~~F~vwap~a~~v~l~~~---~~-~~~m~~~~--~g~~~~~~~~~~~g~-~Y~y~v~~~~~~~DP~a~~~~  107 (618)
T 3m07_A           43 VVRFRLWATGQQKVMLRLA---GK-DQEMQANG--DGWFTLDVAGVTPGT-EYNFVLSDGMVVPDPASRAQK  107 (618)
T ss_dssp             EEEEEEECTTCSCEEEEET---TE-EEECEECS--TTEEEEEEETCCTTC-EEEEEETTSCEECCTTCSCBS
T ss_pred             cEEEEEECCCCCEEEEEEC---CC-cccCeecC--CEEEEEEeCCCCCCC-EEEEEEeCCeEeccccceeee
Confidence            36776 5678999999983   43 37999865  689999885 77776 5889995 5688899876654

>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=92.81  E-value=0.046  Score=53.86  Aligned_cols=59  Identities=17%  Similarity=0.210  Sum_probs=43.5

Q ss_pred             cceEEEEE-ecCCCceEEE-EeccCCCCC---CCCCCCCC--CCCCeEEEEEecCCceEEEEEEEc
Q 024154           19 ILVPVRFI-WPNGGRRVSL-SGSFTRWSE---PMPMSPSE--GCPAVFQIICRLPPGHHQYKFYVD   77 (271)
Q Consensus        19 ~~vpVtF~-w~~~ak~V~V-~GsF~nW~~---~ipM~k~~--~~~g~f~~~~~LppG~yeYKFiVD   77 (271)
                      ..+.++|+ |...+++|.| +|+|++|..   .++|++..  +..|+|++.++.......|||.|.
T Consensus        21 ~~~~~~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~M~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i~   86 (583)
T 1ea9_C           21 TTVHLRIRTKKDDMTAVYALAGDKYMWDHTMEYVPMTKLATDELFDYWECEVTPPYRRVKYGFLLQ   86 (583)
T ss_dssp             SCEECCCEECTTCCSBEEEEEECSSSCTTTCEEEEECEEEECSSCEEECCEECCTTSCEEECBCCE
T ss_pred             CEEEEEEEECCCCccEEEEEECCCcCCCCcEEEEEEEEEeccCCeEEEEEEEECCCceEEEEEEEE
Confidence            34556664 5668999999 799999975   36898743  224579999987777788888873

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=92.42  E-value=0.27  Score=41.65  Aligned_cols=66  Identities=15%  Similarity=0.193  Sum_probs=53.9

Q ss_pred             hHHHHHHhh--hhccccccCCCCCCeEEEcccchHHHHHHHHHHc---CCCeeccccCCCCceeeeechHHHHH
Q 024154          144 SRDRISSFL--STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQ---GLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       144 ~~~~~~~fl--~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~---g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      .+..+...|  ...++-++|-  ..++.+..+.++++|+..|.++   ++..+|+-|. .++++|++|..|++.
T Consensus        41 e~~~i~~~l~~~~~~v~~iM~--~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~-~~~lvGivt~~dll~  111 (205)
T 3kxr_A           41 QRQRFELYDQYSENEIGRYTD--HQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDE-ADKYLGTVRRYDIFK  111 (205)
T ss_dssp             HHHHHHHHHHSCTTCGGGGCB--CCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECT-TCBEEEEEEHHHHTT
T ss_pred             HHHHHHHHhCCCcchHHhhcc--CceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcC-CCeEEEEEEHHHHHh
Confidence            445566555  3457888884  3789999999999999999998   8999999986 589999999999863

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=92.27  E-value=0.11  Score=54.38  Aligned_cols=63  Identities=16%  Similarity=0.244  Sum_probs=45.3

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCC----CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEE--cCe--eecCCCCCe
Q 024154           22 PVRFI-WPNGGRRVSLSGSFTRWS----EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYV--DGE--WRHDENQPH   88 (271)
Q Consensus        22 pVtF~-w~~~ak~V~V~GsF~nW~----~~ipM~k~~~~~g~f~~~~~-LppG~yeYKFiV--DG~--W~~Dp~~P~   88 (271)
                      .|+|+ |...|+.|.|++ |++|.    ..++|.+.+  .|+|++.+. +.+|. .|+|.|  +|.  .+.||....
T Consensus       326 gv~F~vwaP~A~~V~l~l-f~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~g~-~Y~y~v~~~g~~~~~~DPya~~  398 (921)
T 2wan_A          326 ATSFRVWAPTASNVQLLL-YNSEKGSITKQLEMQKSD--NGTWKLQVSGNLENW-YYLYQVTVNGTTQTAVDPYARA  398 (921)
T ss_dssp             EEEEEEECTTCSEEEEEE-ESSSSSCCSEEEECEECG--GGEEEEEEESCCTTC-EEEEEEECSSCEEEECCTTCSS
T ss_pred             eEEEEEECCCCCEEEEEE-EeCCCCCcCeEEeCeeCC--CCEEEEEEccCCCCC-EEEEEEEeCCeEEEecCCccee
Confidence            46665 566899999997 99994    247998865  689999987 55665 366666  564  467877654

>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*

Probab=92.21  E-value=0.026  Score=54.86  Aligned_cols=56  Identities=25%  Similarity=0.438  Sum_probs=0.0

Q ss_pred             cceEEEEEe-cC---CCceEEEEeccC---CCCC--CCCCCC-CCCCCCeEEEEEecCCc-eEEEEEEE
Q 024154           19 ILVPVRFIW-PN---GGRRVSLSGSFT---RWSE--PMPMSP-SEGCPAVFQIICRLPPG-HHQYKFYV   76 (271)
Q Consensus        19 ~~vpVtF~w-~~---~ak~V~V~GsF~---nW~~--~ipM~k-~~~~~g~f~~~~~LppG-~yeYKFiV   76 (271)
                      ..++|+|+. .+   .+++|+|+|+-.   +|++  .++|.. .+  ...|++++.||+| .++|||+|
T Consensus       429 ~~v~v~F~v~~~~t~~G~~v~v~G~~~~LG~W~~~~a~~l~~~~~--~~~W~~~v~lp~~~~~eyKy~~  495 (527)
T 1gcy_A          429 ALVSVSFRCDNGATQMGDSVYAVGNVSQLGNWSPAAALRLTDTSG--YPTWKGSIALPAGQNEEWKCLI  495 (527)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             CEEEEEEEEecccCCCCCeEEEEcChhHhCCCCcccCccCccCCC--CCeEEEEEEeCCCCcEEEEEEE
Confidence            458899997 33   489999999887   7987  468873 32  5689999999998 59999997

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=91.13  E-value=0.31  Score=50.89  Aligned_cols=60  Identities=27%  Similarity=0.499  Sum_probs=43.3

Q ss_pred             ceEEEEEecCCCceEEEEecc-------CCCCCCC---CCCCCCCCCCeEEEEEecCCceEEEEEEEcCeee
Q 024154           20 LVPVRFIWPNGGRRVSLSGSF-------TRWSEPM---PMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR   81 (271)
Q Consensus        20 ~vpVtF~w~~~ak~V~V~GsF-------~nW~~~i---pM~k~~~~~g~f~~~~~LppG~yeYKFiVDG~W~   81 (271)
                      +++|..--..++..+.+.|++       .+|.+..   -|.+..  +|.|+.+..||+|.|+||+.++|.|.
T Consensus       152 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~w~p~~~~~~~~~~~--~~~y~~~~~l~~g~y~~kv~~~~~w~  221 (921)
T 2wan_A          152 KIPVTSAVSANPVTAVLVGDLQQALGAANNWSPDDDHTLLKKIN--PNLYQLSGTLPAGTYQYKIALDHSWN  221 (921)
T ss_dssp             EECEEEEEECCCCCEEEEETTSGGGTCSSSSCTTCGGGBCEEEE--TTEEEEEEEECSEEEEEEEEETTSSS
T ss_pred             cccccccccccccccccccchhhhccccccCCCCCCcceeeccC--CcceeeeeccCCcceeEEEeecCccc
Confidence            344444444456678888877       5788764   343332  68999999999999999999997663

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=90.59  E-value=0.24  Score=47.60  Aligned_cols=59  Identities=20%  Similarity=0.382  Sum_probs=49.0

Q ss_pred             cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      +.-|+|-  .+++.+..+.++.+|+..|.++++.++|+-|.. ++++|++|..|+++.+..-
T Consensus       220 ~v~dim~--~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~-g~lvGiIT~~Dil~~i~~e  278 (473)
T 2zy9_A          220 RVAEIMN--PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLEAE  278 (473)
T ss_dssp             BGGGTSB--SSCCCEESSSBHHHHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHHHHH
T ss_pred             cHHHHhC--CCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCC-CEEEEEEehHhhHHHHHHH
Confidence            3444452  257778888999999999999999999999864 7899999999999988653

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=90.26  E-value=0.24  Score=43.83  Aligned_cols=52  Identities=13%  Similarity=0.135  Sum_probs=43.6

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhc
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG  218 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~  218 (271)
                      ...+.+.-+.++.+|...+...|++.+|+=+  .++.|||+|..|++..|...|
T Consensus       197 ~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~--~GrLVGIVTrkDl~kai~~~~  248 (250)
T 2d4z_A          197 QSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS--MGKLVGVVALAEIQAAIEGSY  248 (250)
T ss_dssp             CCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC--
T ss_pred             CCCeEECCCCcHHHHHHHHHHhCCeEEEEEE--CCEEEEEEEHHHHHHHHHHHh
Confidence            3445566788999999999999999999986  699999999999999886544

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=89.74  E-value=0.22  Score=42.08  Aligned_cols=48  Identities=17%  Similarity=0.267  Sum_probs=42.5

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI  213 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~i  213 (271)
                      .+++.++.+.++.+|+..|.++++..+|+-|.. ++++|++|..|+...
T Consensus        21 ~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-~~l~Givt~~dl~~~   68 (213)
T 1vr9_A           21 QDFPMVEESATVRECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDL   68 (213)
T ss_dssp             SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTS
T ss_pred             CCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCC-CEEEEEEEHHHHHhh
Confidence            467788999999999999999999999999864 789999999998653

>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}

Probab=89.64  E-value=0.28  Score=51.82  Aligned_cols=64  Identities=14%  Similarity=0.259  Sum_probs=46.1

Q ss_pred             EEEE-ecCCCceEEEEe-ccCCCCC---CCCCCCCCCCCCeEEEEEecC--Cc-----eEEEEEEEc--Ce--eecCCCC
Q 024154           23 VRFI-WPNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICRLP--PG-----HHQYKFYVD--GE--WRHDENQ   86 (271)
Q Consensus        23 VtF~-w~~~ak~V~V~G-sF~nW~~---~ipM~k~~~~~g~f~~~~~Lp--pG-----~yeYKFiVD--G~--W~~Dp~~   86 (271)
                      |+|+ |...|++|.|++ ++++|..   .++|.+.+  .|+|++.+...  +|     .+.|+|.|+  |.  ...||..
T Consensus       333 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~~g~~~~~G~~Y~y~i~~~~~~~~~~DPYa  410 (1014)
T 2ya1_A          333 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKGE--RGTWKQTLDSTNKLGITDFTGYYYQYQIERQGKTVLALDPYA  410 (1014)
T ss_dssp             EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEECG--GGEEEEEECTTCSSCCSCCTTCEEEEEEEETTEEEEECCTTC
T ss_pred             EEEEEECCCCCEEEEEEEECCCCCccceEEecccCC--CCEEEEEEcccccCCccccCCcEEEEEEEeCCeEEEecCccc
Confidence            6776 567899999999 8888864   47998743  68999988631  23     256778885  53  4678875


Q ss_pred             Ce
Q 024154           87 PH   88 (271)
Q Consensus        87 P~   88 (271)
                      ..
T Consensus       411 ~~  412 (1014)
T 2ya1_A          411 KS  412 (1014)
T ss_dssp             SS
T ss_pred             ee
Confidence            44

>4fch_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: GLC; 1.30A {Bacteroides thetaiotaomicron}

Probab=87.91  E-value=0.45  Score=41.09  Aligned_cols=50  Identities=16%  Similarity=0.169  Sum_probs=40.1

Q ss_pred             CceEEEEeccCCCCCC--CCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeee
Q 024154           31 GRRVSLSGSFTRWSEP--MPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR   81 (271)
Q Consensus        31 ak~V~V~GsF~nW~~~--ipM~k~~~~~g~f~~~~~LppG~yeYKFiVDG~W~   81 (271)
                      .++++|+|++++|...  .+|.+..+.+|.|...+.|+.|. +|||.-+..|-
T Consensus        12 p~~lY~vG~~~gW~~~~~~~m~~~~~~~g~y~~~~yl~ag~-~fKf~~~~~~~   63 (221)
T 4fch_A           12 PKTMFIVGSMLDTDWKVWKPMAGVYGMDGQFYSMIYFDANS-EFKFGTKENEY   63 (221)
T ss_dssp             CSCCEEEETTTCTTSCCEEECEECTTCTTEEEEEEEECTTE-EEEEESSTTCC
T ss_pred             cceEEEEecCCCCCCCccceeeeccCCCceEEEEEEEcCCC-eEEEeeccCcc
Confidence            5789999999988643  57887765679999999998775 89999876553

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=87.77  E-value=2.1  Score=41.71  Aligned_cols=61  Identities=15%  Similarity=0.208  Sum_probs=48.9

Q ss_pred             HHHHHhhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccC-CCCceeeeechHHHH
Q 024154          146 DRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDD-FKGRFVGVLSALDFI  211 (271)
Q Consensus       146 ~~~~~fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds-~~~~f~G~lt~tD~i  211 (271)
                      ..+++.++.....     ...++.++.+.++.+|+..|.++++...|+.|. ..++++|++|..|+.
T Consensus       107 ~~V~~V~~~~~~m-----~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~  168 (511)
T 3usb_A          107 EQVDKVKRSESGV-----ISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMR  168 (511)
T ss_dssp             HHHHHHHTSSSCS-----SSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHT
T ss_pred             HHHHHhhcccccc-----ccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhh
Confidence            3566666544321     135788999999999999999999999999997 258999999999985

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=87.46  E-value=0.75  Score=40.37  Aligned_cols=56  Identities=23%  Similarity=0.339  Sum_probs=47.6

Q ss_pred             hccccccCCCCCCeEEEcccchHHHHHHHHHHc-----CCCeeccccCCCCceeeeechHHHHH
Q 024154          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQ-----GLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       154 ~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~-----g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ..++-++|-  ..++.+..+.++..|+..|.++     ++...|+-|.. ++++|++|..|++.
T Consensus       134 ~~~v~~iM~--~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~~dll~  194 (278)
T 2yvy_A          134 EDEAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIV  194 (278)
T ss_dssp             TTBGGGTCB--SCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTT-CBEEEEEEHHHHHH
T ss_pred             cchHHhhcC--CCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCC-CCEEEEEEHHHHhc
Confidence            345667773  3788999999999999999988     78999999975 88999999999875

>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*

Probab=87.10  E-value=1.2  Score=34.64  Aligned_cols=64  Identities=14%  Similarity=0.409  Sum_probs=43.2

Q ss_pred             eEEEEEecCCCceEEEEeccC--CCCCC--CCCCCCCCCCCeEEEEEecCC-ceEEEEEEEcC--eeecCCCC
Q 024154           21 VPVRFIWPNGGRRVSLSGSFT--RWSEP--MPMSPSEGCPAVFQIICRLPP-GHHQYKFYVDG--EWRHDENQ   86 (271)
Q Consensus        21 vpVtF~w~~~ak~V~V~GsF~--nW~~~--ipM~k~~~~~g~f~~~~~Lpp-G~yeYKFiVDG--~W~~Dp~~   86 (271)
                      ..+++.|..++..|+|==.+.  +|+..  ++|.+.. +.|.|..++.|+. ...+|+| -||  .|-.+...
T Consensus        10 ~~vTvyY~sg~~~~ylHy~~~~g~Wt~vpgv~M~~~~-~~Gw~~~TI~~~~~~~l~~~F-~dG~~~WDNN~g~   80 (102)
T 2c3v_A           10 TDITIYYKTGWTHPHIHYSLNQGAWTTLPGVPLTKSE-XEGXVKVTIEAEEGSQLRAAF-NNGSGQWDNNQGR   80 (102)
T ss_dssp             CSEEEEEECCCSSCEEEEEETTCCBCCTTCEECEECS-STTEEEEEECCCTTCEEEEEE-ECSSSCEECGGGT
T ss_pred             CEEEEEEcCCCCcEEEEEeCCCCCcccCCCcCccccc-cCCceEEEEecCCCceEEEEE-eCCCcccccCCCc
Confidence            356666667777777663343  47653  6887643 4788999999986 5799999 555  58654433

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=85.88  E-value=0.65  Score=41.23  Aligned_cols=65  Identities=26%  Similarity=0.339  Sum_probs=50.8

Q ss_pred             HHHHHHhhh--hccccccCCCCCCeEEEcccchHHHHHHHHHHc-----CCCeeccccCCCCceeeeechHHHHH
Q 024154          145 RDRISSFLS--THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQ-----GLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       145 ~~~~~~fl~--~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~-----g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      +..++..|.  ..++-++|-  ..++.+..+.++.+|+..|.++     ++...|+-|.. ++++|++|..|++.
T Consensus       125 ~~~i~~ll~~~~~~v~~iM~--~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~-~~lvGivt~~dll~  196 (286)
T 2oux_A          125 AGEIKELLHYEDETAGAIMT--TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDLIV  196 (286)
T ss_dssp             HHHHHHHTTSCTTBHHHHCB--SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHHTT
T ss_pred             HHHHHHHhcCChHHHHHhCC--CCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCC-CeEEEEEEHHHHHc
Confidence            445555542  234556663  3788999999999999999998     78889999975 88999999999875

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=85.55  E-value=0.16  Score=49.36  Aligned_cols=60  Identities=15%  Similarity=0.192  Sum_probs=0.4

Q ss_pred             ccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       157 cYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      .-|+|-...+++.+..+.++.+|+..|.++++..+|+-|.. ++++|++|..|+++.+.+-
T Consensus       163 V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~~Dil~~~~~~  222 (503)
T 1me8_A          163 VSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDD-QHLRYIVFRKDYDRSQVCH  222 (503)
T ss_dssp             ------------------------------------------------------------C
T ss_pred             HHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEecHHHHhhhcc
Confidence            33444444458889999999999999999999999999954 8999999999999987643

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=85.34  E-value=0.68  Score=45.13  Aligned_cols=50  Identities=18%  Similarity=0.325  Sum_probs=45.0

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      .++.+..+.++.+|+..|.++++..+|+-|. .+.++|++|..|++..+.+
T Consensus       185 ~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe-~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          185 QLITAPVGTTLSEAEKILQKYKIEKLPLVDN-NGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             CCCCEETTCCHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHHC
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEeC-CCCEeeeccHHHHHHhhhc
Confidence            5667777888999999999999999999985 4899999999999999876

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=85.33  E-value=0.85  Score=43.58  Aligned_cols=50  Identities=22%  Similarity=0.392  Sum_probs=43.5

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      .++.+..+.++.+|+..|.++++..+|+-|. .++++|++|..|+++.+.+
T Consensus       162 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          162 HLVTAAVGTDLETAERILHEHRIEKLPLVDN-SGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             CCCCEETTCCHHHHHHHHHHTTCSEEEEECT-TSBEEEEEEHHHHHHHHHC
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHHHHHHhc
Confidence            4555666778999999999999999999986 4889999999999998875

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=84.41  E-value=0.49  Score=45.89  Aligned_cols=52  Identities=15%  Similarity=0.084  Sum_probs=44.2

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCC---CCceeeeechHHHHHHHHHhc
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF---KGRFVGVLSALDFILILRELG  218 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~---~~~f~G~lt~tD~i~il~~~~  218 (271)
                      ..++.++-+.++.+|+..|.++++  +|+-|.+   .++++||+|.+|+++.|....
T Consensus       459 ~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~  513 (527)
T 3pc3_A          459 KRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK  513 (527)
T ss_dssp             TTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred             CCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence            457788888999999999988886  6898875   689999999999999887654

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=83.96  E-value=2.6  Score=40.84  Aligned_cols=46  Identities=11%  Similarity=0.242  Sum_probs=42.5

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i  211 (271)
                      ..++.++.+.++..|+..|.++++...|+-|.. ++++|++|..|+.
T Consensus        97 ~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~-~~lvGiVt~rDL~  142 (496)
T 4fxs_A           97 THPVTVRPEQTIADVMELTHYHGFAGFPVVTEN-NELVGIITGRDVR  142 (496)
T ss_dssp             BCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSS-SBEEEEEEHHHHT
T ss_pred             cCceEECCCCCHHHHHHHHHHcCCcEEEEEccC-CEEEEEEEHHHHh
Confidence            567889999999999999999999999999974 8999999999985

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=82.08  E-value=0.24  Score=48.05  Aligned_cols=51  Identities=14%  Similarity=0.060  Sum_probs=0.9

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      +++.+..+.++.+|+..|.++++..+|+-| +.++++|++|..|+++.+.+-
T Consensus       158 ~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD-e~g~lvGiIT~~Dil~~~~~p  208 (490)
T 4avf_A          158 KLVTAREGTPLEEMKAKLYENRIEKMLVVD-ENFYLRGLVTFRDIEKAKTYP  208 (490)
T ss_dssp             --------------------------------------------------CT
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEehHHhhhhccCc
Confidence            578888889999999999999999999998 458899999999999987653

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=81.09  E-value=2.8  Score=39.97  Aligned_cols=47  Identities=17%  Similarity=0.259  Sum_probs=42.6

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccC-CCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDD-FKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds-~~~~f~G~lt~tD~i~  212 (271)
                      .++.++.+.++.+|+..|.++++...|+-|. +.++++|++|..|++.
T Consensus        99 ~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~  146 (491)
T 1zfj_A           99 DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRF  146 (491)
T ss_dssp             SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHH
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhh
Confidence            7788898999999999999999999999994 5689999999999874

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=80.26  E-value=0.83  Score=45.45  Aligned_cols=47  Identities=15%  Similarity=0.148  Sum_probs=42.0

Q ss_pred             CCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       164 s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      +.+++.++-+.++.+|...|.+++++.+|+=  +.++++||+|.+|+++
T Consensus       575 t~~pitV~~~~~l~ea~~~M~~~~i~~lpVv--e~G~lvGIVT~~Dll~  621 (632)
T 3org_A          575 DVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT--ERGKLVGIVEREDVAY  621 (632)
T ss_dssp             CCCCCEEETTCBHHHHHHHHHHTCCSEEEEE--ETTEEEEEEEGGGTEE
T ss_pred             cCCCceecCCCcHHHHHHHHHhcCCCEEEEE--ECCEEEEEEehhhHHH
Confidence            3457789999999999999999999999998  6789999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	271
d2qlvb1	87	b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisi	2e-24
d1z0na1	87	b.1.18.21 (A:77-163) 5'-AMP-activated protein kina	4e-24
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	3e-10
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	2e-07

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 91.7 bits (227), Expect = 2e-24
 Identities = 27/82 (32%), Positives = 42/82 (51%)

Query: 18 SILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD 77
          S++VPV   W  GG +V ++GSFT+W + + + P       F +  RL PG H+++F VD
Sbjct: 1  SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60

Query: 78 GEWRHDENQPHVSGNYGVVNCV 99
           E R  +  P  +   G     
Sbjct: 61 NELRVSDFLPTATDQMGNFVNY 82

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

 Score = 90.7 bits (225), Expect = 4e-24
 Identities = 40/88 (45%), Positives = 51/88 (57%), Gaps = 5/88 (5%)

Query: 21  VPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEW 80
            P  F W  GG+ V LSGSF  WS  +PM+ S+     F  I  LP G HQYKF+VDG+W
Sbjct: 2   RPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRSQN---NFVAILDLPEGEHQYKFFVDGQW 57

Query: 81  RHDENQPHVSGNYGVVNCVYIAVPQPDM 108
            HD ++P V+   G VN + I V + D 
Sbjct: 58  THDPSEPIVTSQLGTVNNI-IQVKKTDF 84

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.6 bits (133), Expect = 3e-10
 Identities = 29/71 (40%), Positives = 41/71 (57%)

Query: 148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 207
            ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+ 
Sbjct: 6   YTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTI 65

Query: 208 LDFILILRELG 218
            DFI IL    
Sbjct: 66  TDFINILHRYY 76

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 48.1 bits (113), Expect = 2e-07
 Identities = 22/72 (30%), Positives = 39/72 (54%)

Query: 147 RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLS 206
            I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD    +F G+L+
Sbjct: 12  EIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLT 71

Query: 207 ALDFILILRELG 218
             DF+ +++   
Sbjct: 72  MADFVNVIKYYY 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	271
d2qlvb1	87	SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}	99.95
d1z0na1	87	5'-AMP-activated protein kinase subunit beta-1 {Ra	99.94
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.79
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.62
d1m7xa1	110	1,4-alpha-glucan branching enzyme, N-terminal doma	98.56
d2bhua1	97	Glycosyltrehalose trehalohydrolase, N-terminal dom	98.45
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.07
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.03
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.03
d1eh9a1	90	Glycosyltrehalose trehalohydrolase, N-terminal dom	97.78
d1kula_	108	Glucoamylase, granular starch-binding domain {Aspe	97.77
d3bmva2	105	Cyclodextrin glycosyltransferase, C-terminal domai	97.77
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	97.68
d1qhoa2	110	Cyclodextrin glycosyltransferase, C-terminal domai	97.6
d1cyga2	106	Cyclodextrin glycosyltransferase, C-terminal domai	97.57
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	97.43
d1vema1	99	beta-amylase {Bacillus cereus [TaxId: 1396]}	97.32
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	97.23
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	97.15
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	97.05
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	96.94
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	96.76
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	96.74
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	96.68
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	96.66
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	96.58
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	96.3
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	96.07
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	96.05
d1bf2a1	162	Isoamylase, N-terminal domain N {Pseudomonas amylo	95.93
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	95.88
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	95.86
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	95.85
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	95.82
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	95.8
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	95.79
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	95.76
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	95.75
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	95.73
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	95.67
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	95.64
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	95.62
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	95.59
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	95.5
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	95.49
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	95.48
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	95.39
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	95.08
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	95.02
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	94.93
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	94.9
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	94.88
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	94.7
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	94.48
d2fhfa1	115	Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57	94.41
d3c8da1	145	Enterochelin esterase {Shigella flexneri 2a str. 2	94.3
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	94.27
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	94.07
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	93.8
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	92.86
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	91.82
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	90.76
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	82.87
d1ji1a1	122	Maltogenic amylase, N-terminal domain N {Thermoact	82.27
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	81.55
d1wzla1	120	Maltogenic amylase, N-terminal domain N {Thermoact	80.37

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.95  E-value=6.2e-28  Score=183.59  Aligned_cols=84  Identities=31%  Similarity=0.647  Sum_probs=78.2

Q ss_pred             cceEEEEEecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeeecCCCCCeeeCCCCcccc
Q 024154           19 ILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNC   98 (271)
Q Consensus        19 ~~vpVtF~w~~~ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~LppG~yeYKFiVDG~W~~Dp~~P~v~d~~G~~NN   98 (271)
                      .++||+|+|+++|++|+|+||||+|++..+|.+....+|.|++++.|+||.|+|||+|||+|++||++|++.|+.|+.||
T Consensus         2 ~~vpv~f~w~~~g~~V~v~GsFn~W~~~~~~~~~~~~~g~~~~~l~l~~G~y~YKFiVDG~w~~d~~~p~~~d~~G~~nn   81 (87)
T d2qlvb1           2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVN   81 (87)
T ss_dssp             CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEE
T ss_pred             eEEEEEEEECCCCeEEEEEEEecCcCcccccccccCCCccEEEEEeCCCCCEEEEEEECCcEEcCCCCCeeECCCCCEeE
Confidence            46999999999999999999999999887776654457899999999999999999999999999999999999999999


Q ss_pred             EEEe
Q 024154           99 VYIA  102 (271)
Q Consensus        99 vl~V  102 (271)
                      +|.|
T Consensus        82 vi~V   85 (87)
T d2qlvb1          82 YIEV   85 (87)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9999

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

Probab=99.94  E-value=7.6e-27  Score=177.96  Aligned_cols=84  Identities=45%  Similarity=0.896  Sum_probs=77.0

Q ss_pred             ceEEEEEecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeeecCCCCCeeeCCCCccccE
Q 024154           20 LVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV   99 (271)
Q Consensus        20 ~vpVtF~w~~~ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~LppG~yeYKFiVDG~W~~Dp~~P~v~d~~G~~NNv   99 (271)
                      ++||+|+|+++|++|+|+|||++|++ .+|.+.   +|.|++++.|+||.|+|||+|||+|++|+.+|++.|+.|+.||+
T Consensus         1 ~~P~~f~w~~~a~~V~v~Gsfn~W~~-~~~~~~---~g~~~~tl~L~~G~y~YKFiVDG~w~~d~~~~~~~d~~G~~Nnv   76 (87)
T d1z0na1           1 ARPTVFRWTGGGKEVYLSGSFNNWSK-LPMTRS---QNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNI   76 (87)
T ss_dssp             CEEEEEEECSCCSCEEEEEGGGTTCC-EECEEE---TTEEEEEEEECSEEEEEEEEETTEEECCTTSCEEECTTSCEEEE
T ss_pred             CCCEEEEEcCCCEEEEEEEEeCCCCc-cccccC---CCcEEEEEECCCceEEEEEEECCEEEeCCCCCeeECCCCCEEEE
Confidence            47999999999999999999999986 677664   58999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCC
Q 024154          100 YIAVPQPDM  108 (271)
Q Consensus       100 l~V~~~~~~  108 (271)
                      |.| ++.++
T Consensus        77 i~V-~~~D~   84 (87)
T d1z0na1          77 IQV-KKTDF   84 (87)
T ss_dssp             EEE-CSCTT
T ss_pred             EEE-CCCcc
Confidence            999 65543

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.79  E-value=1.2e-19  Score=150.56  Aligned_cols=120  Identities=21%  Similarity=0.370  Sum_probs=104.2

Q ss_pred             HHHhHHHHHHhhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhccC
Q 024154          141 LQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN  220 (271)
Q Consensus       141 ~~~~~~~~~~fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~~~  220 (271)
                      .+.+...+++||+.++|||+||.|+|+|++|.+.+|++||..|.++|+.++|+||+++++++||||.+|++.+|.+++..
T Consensus         6 ~~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~   85 (179)
T d2ooxe1           6 QKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQS   85 (179)
T ss_dssp             HHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhcccc
Confidence            34577899999999999999999999999999999999999999999999999999999999999999999988877654


Q ss_pred             C-CCcchhhhhccchhHHHHHHHhhhhcccCCCCCCCCCCCceEecCCCCC
Q 024154          221 G-SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQVSASSVS  270 (271)
Q Consensus       221 ~-~~~~~~~le~~~I~~~re~~~~~~~~~~~~~~~~~~~~plv~i~p~~~l  270 (271)
                      . .+....++..+....+++......          ...++++++.|+++|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~v~~~~sl  126 (179)
T d2ooxe1          86 SSFPEAIAEIDKFRLLGLREVERKIG----------AIPPETIYVHPMHSL  126 (179)
T ss_dssp             CSCGGGGGGGGGSBHHHHHHHHHHTT----------CSCSSCCCBCTTSBH
T ss_pred             ccchhhhhhhhccchhhhcccceeee----------ecccCceEECCCCcH
Confidence            2 334567777888888887776643          346899999999987

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.5e-16  Score=129.23  Aligned_cols=112  Identities=37%  Similarity=0.611  Sum_probs=94.6

Q ss_pred             HHHHHhhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhccCCCCcc
Q 024154          146 DRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT  225 (271)
Q Consensus       146 ~~~~~fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~~~~~~~~  225 (271)
                      ..|.+||+++||||+||.+.|+|++|++.++++||..|.++++.++|++|.+.++++|+||..|++.++...+.. ....
T Consensus         4 ~~~~~~l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~-~~~~   82 (159)
T d2v8qe2           4 SVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKS-ALVQ   82 (159)
T ss_dssp             CHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHH-HTTT
T ss_pred             hHHHHHhcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhcccc-ccch
Confidence            368999999999999999999999999999999999999999999999999999999999999999999887753 1223


Q ss_pred             hhhhhccchhHHHHHHHhhhhcccCCCCCCCCCCCceEecCCCCC
Q 024154          226 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQVSASSVS  270 (271)
Q Consensus       226 ~~~le~~~I~~~re~~~~~~~~~~~~~~~~~~~~plv~i~p~~~l  270 (271)
                      ...+..+.+..+.......            ..++++++.|+++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~v~~~~~l  115 (159)
T d2v8qe2          83 IYELEEHKIETWREVYLQD------------SFKPLVCISPNASL  115 (159)
T ss_dssp             CCCGGGCBHHHHHHHHSSS------------SCCCCCCBCTTSBH
T ss_pred             hhhhhhhhcccccceeeee------------eccceEEECCCCcH
Confidence            4555566666666555442            35788999999876

>d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: 1,4-alpha-glucan branching enzyme, N-terminal domain N
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=1.6e-07  Score=72.43  Aligned_cols=68  Identities=25%  Similarity=0.504  Sum_probs=52.1

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEecCCceEEEEEEE---cCeee--cCCCCCeee
Q 024154           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRLPPGHHQYKFYV---DGEWR--HDENQPHVS   90 (271)
Q Consensus        22 pVtF~-w~~~ak~V~V~GsF~nW~~~-ipM~k~~~~~g~f~~~~~LppG~yeYKFiV---DG~W~--~Dp~~P~v~   90 (271)
                      -|+|+ |...|++|+|+|+||+|... .+|.+.+ ..|.|++.+.....-..|||.|   ||+|.  .||..-...
T Consensus        21 Gv~FrvwAP~A~~V~l~gdfn~~~~~~~~m~~~~-~~G~W~~~i~~~~~G~~Y~y~v~~~~G~~~~~~DPYA~~~e   95 (110)
T d1m7xa1          21 GTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRK-ESGIWELFIPGAHNGQLYKYEMIDANGNLRLKSDPYAFEAQ   95 (110)
T ss_dssp             EEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCCT-TTTEEEEEEETCCTTCEEEEEEECTTSCEEEECCTTCSSEE
T ss_pred             eEEEEEECCCCCEEEEEEECCCCCCceEEeEEec-CCCcEEEEecCCCCCCEEEEEEEcCCCcEeEEcChhhcccc
Confidence            37885 88899999999999999764 5887543 2689999998666566788877   77765  587765544

>d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.45  E-value=5.1e-08  Score=74.18  Aligned_cols=64  Identities=20%  Similarity=0.288  Sum_probs=52.9

Q ss_pred             EEEEEe-cCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeeecCCCCCeeeCC
Q 024154           22 PVRFIW-PNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGN   92 (271)
Q Consensus        22 pVtF~w-~~~ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~LppG~yeYKFiVDG~W~~Dp~~P~v~d~   92 (271)
                      -|+|+. ...|++|.|+++++.    .+|.+.+  .|+|++++.+.+|.+ |+|+|||.|+.||......++
T Consensus        22 g~~FrvwAP~A~~V~l~~~~~~----~~m~~~~--~G~w~~~~~~~~G~~-Y~y~vdg~~~~DPyar~~~~~   86 (97)
T d2bhua1          22 GTRFRLWTSTARTVAVRVNGTE----HVMTSLG--GGIYELELPVGPGAR-YLFVLDGVPTPDPYARFLPDG   86 (97)
T ss_dssp             CEEEEEECSSCSSEEEEETTEE----EECEEEE--TTEEEEEESCCTTCE-EEEEETTEEECCTTCSCCTTC
T ss_pred             eEEEEEECCCCCEeEEEeeCCc----cCCEEcc--CEEEEEEcCCCCCCE-EEEEECCeEccCCchhcCCCC
Confidence            477875 668999999997654    5899876  799999999999975 999999999999987665543

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.07  E-value=1e-06  Score=68.78  Aligned_cols=65  Identities=11%  Similarity=0.163  Sum_probs=54.8

Q ss_pred             hhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhcc
Q 024154          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGT  219 (271)
Q Consensus       152 l~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~~  219 (271)
                      |+.+.+.+++..  +.++++.+-++.+|+..|.++|+.++|++|.+ ++++|++|..|++..+...+.
T Consensus         1 mk~~~v~~~m~~--~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~-~~~vGiis~~Dl~~~~~~~~~   65 (145)
T d1o50a3           1 MKVKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-NKLVGMIPVMHLLKVSGFHFF   65 (145)
T ss_dssp             CBHHHHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-TEEEEEEEHHHHHHHHHHHHH
T ss_pred             CcceEhHHhCCC--CCEEECCcCcHHHHHHHHHHcCCceEEEeccC-cceeeeeccchhhhhhhcccc
Confidence            455666777764  45889999999999999999999999999965 799999999999998776554

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.03  E-value=3.6e-06  Score=65.68  Aligned_cols=65  Identities=15%  Similarity=0.256  Sum_probs=55.7

Q ss_pred             hcccccc-CCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhcc
Q 024154          154 THTVYEL-LPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGT  219 (271)
Q Consensus       154 ~~tcYd~-lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~~  219 (271)
                      ..+-.|+ +..+.+++.++.+.++.+|+..|.++++.++|+||.+ ++++|++|.+|+++.+...+.
T Consensus         5 ~~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~-~~~vG~it~~Di~~~~~~~~~   70 (140)
T d2nyca1           5 KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIY   70 (140)
T ss_dssp             GSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC--
T ss_pred             cCcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-CeEcceehhhHHHHHHhhccc
Confidence            4566777 6778899999999999999999999999999999965 579999999999998865543

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.03  E-value=1e-06  Score=68.41  Aligned_cols=59  Identities=22%  Similarity=0.323  Sum_probs=52.4

Q ss_pred             cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      ||=++|-.+.+++.++.+-++++|+.+|.++|+...|+.|.. ++++|++|..|++..+.
T Consensus         3 tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~-~~~vGiit~~di~~~~~   61 (132)
T d1yava3           3 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIF   61 (132)
T ss_dssp             BHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHB
T ss_pred             CHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecc-cccccEEEcchhHHHhh
Confidence            455666668999999999999999999999999999999966 78999999999887654

>d1eh9a1 b.1.18.2 (A:1-90) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]

Probab=97.78  E-value=5.9e-06  Score=61.43  Aligned_cols=62  Identities=19%  Similarity=0.161  Sum_probs=47.8

Q ss_pred             EEEEe-cCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcC-eeecCCCCCeee
Q 024154           23 VRFIW-PNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDG-EWRHDENQPHVS   90 (271)
Q Consensus        23 VtF~w-~~~ak~V~V~GsF~nW~~~ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVDG-~W~~Dp~~P~v~   90 (271)
                      |+|+. ...|++|.|++...+|   .+|.+.+  +|+|++++. +.+| +.|+|+||| ..+.||......
T Consensus        11 v~FrvwAP~A~~V~l~~~~~~~---~~m~~~~--~G~W~~~v~~~~~G-~~Y~y~v~~~~~~~DP~s~~~~   75 (90)
T d1eh9a1          11 VIFTLWAPYQKSVKLKVLEKGL---YEMERDE--KGYFTITLNNVKVR-DRYKYVLDDASEIPDPASRYQP   75 (90)
T ss_dssp             EECCEECTTCSCCBCCCSSSCC---CCCCCCT--TSEECCEESSCCSC-CEECEECTTSCEECCTTCSCCT
T ss_pred             EEEEEECCCCCEEEEEeecCCc---ccceeCC--CCEEEEEeCCCCCC-ceeEEEEeCCcCcCCccHhcCC
Confidence            56764 5689999999875444   6898876  799999986 7788 669999987 567888765544

>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Glucoamylase, granular starch-binding domain
species: Aspergillus niger [TaxId: 5061]

Probab=97.77  E-value=3.2e-05  Score=58.81  Aligned_cols=59  Identities=25%  Similarity=0.521  Sum_probs=47.0

Q ss_pred             CcceEEEEEecC---CCceEEEEeccC---CCCCC--CCCCCCC--CCCCeEEEEEecCCc-eEEEEEEE
Q 024154           18 SILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE--GCPAVFQIICRLPPG-HHQYKFYV   76 (271)
Q Consensus        18 ~~~vpVtF~w~~---~ak~V~V~GsF~---nW~~~--ipM~k~~--~~~g~f~~~~~LppG-~yeYKFiV   76 (271)
                      +..+.|+|...+   -|+.|+|+|+..   +|++.  ++|...+  ...+.|++++.|++| .++|||+|
T Consensus         4 ~~~v~V~F~v~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~w~~~v~~~~~~~~eYKyvi   73 (108)
T d1kula_           4 PTAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIR   73 (108)
T ss_dssp             TTCCCEEEECCCCCCSSCEEEEECSSGGGTTTCTTTSEECBCTTCSSSSCCCBCEECCCSCCEECCEEEE
T ss_pred             CCEEEEEEEEEeEcCCCCEEEEEeChHHhCCCCHHHCccceEccccCCCCCEEEEEEeCCCCeEEEEEEE
Confidence            456899999976   379999999976   89764  5787542  124689999999998 59999998

>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Thermoanaerobacterium [TaxId: 28895]

Probab=97.77  E-value=3.3e-05  Score=58.62  Aligned_cols=59  Identities=24%  Similarity=0.353  Sum_probs=46.5

Q ss_pred             cceEEEEEecC----CCceEEEEeccC---CCCC--CCCCCCCCC--CCCeEEEEEecCCce-EEEEEEEc
Q 024154           19 ILVPVRFIWPN----GGRRVSLSGSFT---RWSE--PMPMSPSEG--CPAVFQIICRLPPGH-HQYKFYVD   77 (271)
Q Consensus        19 ~~vpVtF~w~~----~ak~V~V~GsF~---nW~~--~ipM~k~~~--~~g~f~~~~~LppG~-yeYKFiVD   77 (271)
                      ..++|+|....    .|+.|+|+|+..   +|++  .++|.....  ..+.|++++.||+|. ++|||++.
T Consensus         4 ~~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKyv~~   74 (105)
T d3bmva2           4 NQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAGTTIQFKFIKK   74 (105)
T ss_dssp             SEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEETTCEEEEEEEEE
T ss_pred             CEEEEEEEEcccccCCCCEEEEEeCcHHHCCCCHHHCcccccccccCCCCeEEEEEEECCCCeEEEEEEEE
Confidence            45889999863    489999999976   8975  468876532  246899999999985 99999983

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=97.68  E-value=3.9e-05  Score=59.86  Aligned_cols=63  Identities=17%  Similarity=0.244  Sum_probs=55.1

Q ss_pred             ccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCC-CCceeeeechHHHHHHHHHhcc
Q 024154          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF-KGRFVGVLSALDFILILRELGT  219 (271)
Q Consensus       155 ~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~-~~~f~G~lt~tD~i~il~~~~~  219 (271)
                      -++-|+|-  ..++.++.+.++.+|++.|.++++++.|++|.. .+.++|++|..|++..|.....
T Consensus        11 ~~V~diM~--~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~   74 (160)
T d2d4za3          11 IQVGDIMV--RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRIS   74 (160)
T ss_dssp             CBTTSSSB--SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHH
T ss_pred             eEHHHhcC--CCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccc
Confidence            36778884  478888999999999999999999999999975 5789999999999998887654

>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

Probab=97.60  E-value=0.00013  Score=55.62  Aligned_cols=57  Identities=23%  Similarity=0.485  Sum_probs=43.4

Q ss_pred             ceEEEEEecC-----CCceEEEEeccC---CCCCC--CCCCCCCC-----CCCeEEEEEecCCc-eEEEEEEE
Q 024154           20 LVPVRFIWPN-----GGRRVSLSGSFT---RWSEP--MPMSPSEG-----CPAVFQIICRLPPG-HHQYKFYV   76 (271)
Q Consensus        20 ~vpVtF~w~~-----~ak~V~V~GsF~---nW~~~--ipM~k~~~-----~~g~f~~~~~LppG-~yeYKFiV   76 (271)
                      ...|+|+...     -|+.|+|+|+..   +|++.  ++|...++     ..+.|++++.||+| .++|||++
T Consensus         5 ~~~V~f~v~~~~~T~~Gq~v~ivG~~~~LG~W~~~~a~~l~~~~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi   77 (110)
T d1qhoa2           5 QTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVFSVPAGKTIQFKFFI   77 (110)
T ss_dssp             EEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCTTTTSEEEEEEEETTCEEEEEEEE
T ss_pred             ceEEEEEEeCcccCCCCCEEEEEeCcHHHCCCChhhccccccccCccccccCCeEEEEEEECCCCEEEEEEEE
Confidence            3577777753     378999999986   89874  57765431     24579999999998 59999987

>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.57  E-value=0.00011  Score=55.51  Aligned_cols=58  Identities=22%  Similarity=0.371  Sum_probs=46.2

Q ss_pred             cceEEEEEecC----CCceEEEEeccC---CCCCC--CCCCCCCC--CCCeEEEEEecCCc-eEEEEEEE
Q 024154           19 ILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--MPMSPSEG--CPAVFQIICRLPPG-HHQYKFYV   76 (271)
Q Consensus        19 ~~vpVtF~w~~----~ak~V~V~GsF~---nW~~~--ipM~k~~~--~~g~f~~~~~LppG-~yeYKFiV   76 (271)
                      ..++|+|....    .|+.|+|+||..   +|++.  ++|...+.  ....|.+++.||.| .++|||+|
T Consensus         4 ~~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~w~~~v~~~~~~~~eYKyvi   73 (106)
T d1cyga2           4 DQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPEGKTIEFKFIK   73 (106)
T ss_dssp             CEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEEESSCEEEEEEEE
T ss_pred             CEEEEEEEEcceEcCCCCEEEEEcCHHHHCCCCHHHCccceeccCcCCCCeEEEEEEeCCCCeEEEEEEE
Confidence            56899999953    489999999964   89753  68886532  24579999999998 69999998

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.43  E-value=2.8e-05  Score=61.04  Aligned_cols=52  Identities=19%  Similarity=0.229  Sum_probs=46.2

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      -.+++++.+.++++|+..|.++++.+.|++|.+ ++++|++|..|++..+...
T Consensus        12 r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~-~~lvG~it~~Dl~~~~~~~   63 (156)
T d2yzqa1          12 RYVSIVWEGTPLKAALKALLLSNSMALPVVDSE-GNLVGIVDETDLLRDSEIV   63 (156)
T ss_dssp             SCCCCEETTSBHHHHHHHHHTCSSSEEEEECTT-SCEEEEEEGGGGGGCGGGC
T ss_pred             CCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCC-CCceeEEeeeechhhhccc
Confidence            468999999999999999999999999999954 8899999999998655443

>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: beta-amylase
species: Bacillus cereus [TaxId: 1396]

Probab=97.32  E-value=0.00019  Score=53.81  Aligned_cols=56  Identities=16%  Similarity=0.235  Sum_probs=41.9

Q ss_pred             eEEEEEecC----CCceEEEEeccC---CCCCCC--CCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 024154           21 VPVRFIWPN----GGRRVSLSGSFT---RWSEPM--PMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (271)
Q Consensus        21 vpVtF~w~~----~ak~V~V~GsF~---nW~~~i--pM~k~~~~~g~f~~~~~LppG-~yeYKFiV   76 (271)
                      ++++|...+    -|+.|+|+|+..   +|++..  .|.........|++.+.||+| .++|||++
T Consensus         3 v~~~~~v~~~~T~~Gq~v~vvGs~~eLG~W~~~ka~~l~~~~~~~~~W~~~v~lp~~~~~eYKyvi   68 (99)
T d1vema1           3 VMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYDSHSNDWRGNVVLPAERNIEFKAFI   68 (99)
T ss_dssp             EEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEETTTTEEEEEEEEETTCCEEEEEEE
T ss_pred             eeEEEEEeeeEcCCCCEEEEEeCcHHHCCCChhhheeeeeccCCCCCEEEEEEEcCCCcEEEEEEE
Confidence            567777764    489999999988   998642  222112225689999999998 59999998

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=97.23  E-value=0.00022  Score=55.19  Aligned_cols=53  Identities=17%  Similarity=0.223  Sum_probs=47.2

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhcc
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGT  219 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~~  219 (271)
                      +++.++.+.+++.|+..|.++++...|+-|.+ ++++|++|..|++..+...+.
T Consensus        11 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~-~~~~Giit~~dl~~~~~~~~~   63 (139)
T d2o16a3          11 HPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQ   63 (139)
T ss_dssp             SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC
T ss_pred             CCeEECCcCCHHHHHHHHHHcCCCeeeeeccc-ccccccccHHHHHHHHHhhhh
Confidence            56778899999999999999999999999855 789999999999998877654

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.15  E-value=0.00014  Score=57.26  Aligned_cols=56  Identities=14%  Similarity=0.331  Sum_probs=50.4

Q ss_pred             CCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          161 LPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       161 lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      +++...++.++-+.++.+|+..|.++++.+.|++|.+ ++++|++|..|++..+...
T Consensus         8 ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~vG~it~~Dl~~~~~~~   63 (153)
T d2ooxe2           8 IGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSE-GTLLNVYESVDVMHLIQDG   63 (153)
T ss_dssp             CSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGG-GBEEEEEEHHHHHHHHGGG
T ss_pred             CCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeeccc-ceEEEEEEeeeeeehhccc
Confidence            5667789999999999999999999999999999964 8899999999998877654

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.05  E-value=0.00011  Score=56.96  Aligned_cols=54  Identities=20%  Similarity=0.388  Sum_probs=47.7

Q ss_pred             CCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          161 LPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       161 lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      ++...+++.+..+-++..|+..|.++++.+.|+.|. .++++|++|.+|++..+.
T Consensus        16 i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~-~~~~~Gvit~~di~~~l~   69 (145)
T d2v8qe1          16 IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAA   69 (145)
T ss_dssp             CSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT-TSBEEEEEEGGGTGGGGG
T ss_pred             CCCCCCceEEcCcCcHHHHHHHHHHcCCCccccccc-CCceEEEEEcchhhhhhh
Confidence            455567999999999999999999999999999995 467999999999987554

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.94  E-value=0.00019  Score=54.42  Aligned_cols=55  Identities=20%  Similarity=0.365  Sum_probs=46.8

Q ss_pred             cccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHH
Q 024154          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI  213 (271)
Q Consensus       156 tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~i  213 (271)
                      ||-|+|  +..++.++.+-++++|+..|.++++...|+.|.. ++++|++|..|++..
T Consensus         2 t~~diM--~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-~~~~Giit~~Di~~~   56 (123)
T d1y5ha3           2 TARDIM--NAGVTCVGEHETLTAAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIK   56 (123)
T ss_dssp             CHHHHS--EETCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHT
T ss_pred             CHHHhc--CCCCcEECCcCcHHHHHHHHHHcCCCceEEEecc-chhhhhhhhhhHhhh
Confidence            455555  3457888999999999999999999999999975 789999999999763

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.76  E-value=0.0006  Score=52.96  Aligned_cols=51  Identities=25%  Similarity=0.252  Sum_probs=45.3

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      .+++.++.+.++.+|+..|.++++..+|+.|.. ++++|++|.+|++..+..
T Consensus        11 ~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~-~~~~Giit~~di~~~~~~   61 (142)
T d1pvma4          11 SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIP   61 (142)
T ss_dssp             TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGG
T ss_pred             CCCcEECCcCcHHHHHHHHHHCCCceEeeeccC-CcccceEEeechhhhhhh
Confidence            568899999999999999999999999999855 899999999999875543

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.74  E-value=0.00068  Score=51.90  Aligned_cols=50  Identities=20%  Similarity=0.271  Sum_probs=46.0

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      .+++.++.+-++++|+..|.++|+++.|+.|.+ +.|+|++|..|++..+.
T Consensus        13 ~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~   62 (132)
T d2yzia1          13 KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVI   62 (132)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTT
T ss_pred             CCCeEECCcCcHHHHHHHHHHcCCcEEEEeccc-ceeeeeeeHHHHHHHHh
Confidence            578999999999999999999999999999975 78999999999997654

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.68  E-value=0.00087  Score=52.24  Aligned_cols=54  Identities=15%  Similarity=0.206  Sum_probs=48.0

Q ss_pred             CCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       164 s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      ...++.++-+.++.+|+..|.++|+..+|+=|.+.++++||+|.+|+++.|...
T Consensus       103 ~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~~  156 (159)
T d2v8qe2         103 FKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLF  156 (159)
T ss_dssp             CCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHH
T ss_pred             ccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHHH
Confidence            345677788889999999999999999999999999999999999999887543

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.66  E-value=0.00091  Score=51.06  Aligned_cols=51  Identities=16%  Similarity=0.312  Sum_probs=44.6

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      ..++.+..+-+++.|+..|.++++.+.|+=|. .++++||+|..|++++|+.
T Consensus        73 ~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~-~g~lvGiIt~~Dil~~i~e  123 (127)
T d2ouxa2          73 ERVISVHVGDDQEDVAQTIRDYDFLAVPVTDY-DDHLLGIVTVDDIIDVIDD  123 (127)
T ss_dssp             SCCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred             CCCccCCCCCCHHHHHHHHHHhCCEEEEEEeC-CCEEEEEEEHHHHHHHHHH
Confidence            34566777889999999999999999999985 4899999999999998864

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00087  Score=53.15  Aligned_cols=51  Identities=16%  Similarity=0.208  Sum_probs=44.4

Q ss_pred             EEEcccchHHHHHHHHHHcCCCeeccccC-CCCceeeeechHHHHHHHHHhc
Q 024154          168 TALDVNLAVKQAFHVLYEQGLPMVPLWDD-FKGRFVGVLSALDFILILRELG  218 (271)
Q Consensus       168 vv~D~~l~v~~Af~al~~~g~~~aplwds-~~~~f~G~lt~tD~i~il~~~~  218 (271)
                      |..+.+.++++|+..|.++++++.|+-++ +.++++|++|..|++..|..-.
T Consensus        20 v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~   71 (169)
T d2j9la1          20 VLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENAR   71 (169)
T ss_dssp             CEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHH
T ss_pred             EECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhccc
Confidence            45678899999999999999999999865 5678999999999999886543

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.30  E-value=0.00081  Score=51.10  Aligned_cols=52  Identities=13%  Similarity=0.282  Sum_probs=45.0

Q ss_pred             CCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       164 s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      +..++.+..+-++.+|+..|.++++..+|+.|.. ++++|++|.+|+++++..
T Consensus        81 ~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          81 TPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN-DKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             EESCCCEETTSCHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHGGGGGG
T ss_pred             CCccceEEeccccchhhhhhhhcceeEEEEEeCC-CEEEEEEEHHHHHHHHHH
Confidence            3466778888889999999999999999999955 889999999999987643

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=96.07  E-value=0.0042  Score=47.66  Aligned_cols=50  Identities=14%  Similarity=0.189  Sum_probs=43.9

Q ss_pred             CCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       164 s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      +..++.++.+-++.+|+..|.++|++.+|+=|  .++++||+|.+|+++.|+
T Consensus       110 ~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d--~g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3         110 DQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS--MGKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             ECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred             cCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE--CCEEEEEEEHHHHHHHhC
Confidence            34456788899999999999999999999965  489999999999999875

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.05  E-value=0.0015  Score=50.72  Aligned_cols=61  Identities=16%  Similarity=0.346  Sum_probs=50.8

Q ss_pred             hhhhccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       151 fl~~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      .+...+..+++-  ..++.+..+-++.+|+..|.++|+...|+=|.+ ++++||+|.+|+|+.|
T Consensus        95 ~~~~~~v~~~m~--~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1          95 QLPNKPVAEIMT--RDVIVATPHMTVHEVALKMAKYSIEQLPVIRGE-GDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             --CCCBGGGTCB--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETT-TEEEEEEEHHHHGGGG
T ss_pred             cccCCEeehhcc--cCceEECcccccHHHHHHHHHcCeeEEEEEeCC-CEEEEEEEHHHHHHHh
Confidence            345667777763  457778889999999999999999999999865 8999999999999865

>d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Isoamylase, N-terminal domain N
species: Pseudomonas amyloderamosa [TaxId: 32043]

Probab=95.93  E-value=0.0054  Score=49.05  Aligned_cols=56  Identities=14%  Similarity=0.274  Sum_probs=41.8

Q ss_pred             EEEE-EecCCCceEEEEeccCCCCCC----CCCCCCCCCCCeEEEEEe--------cCCceEEEEEEEcCee
Q 024154           22 PVRF-IWPNGGRRVSLSGSFTRWSEP----MPMSPSEGCPAVFQIICR--------LPPGHHQYKFYVDGEW   80 (271)
Q Consensus        22 pVtF-~w~~~ak~V~V~GsF~nW~~~----ipM~k~~~~~g~f~~~~~--------LppG~yeYKFiVDG~W   80 (271)
                      -|+| .|...|++|.|+--.+++...    ++|.+.+  .|+|.+.+.        +.+|.+ |.|.|||.|
T Consensus        17 ~v~F~vwAp~A~~V~L~ly~~~~~~~~~~~~~l~~~~--~gvW~~~v~~~~~~~~g~~~G~~-Y~yrv~Gp~   85 (162)
T d1bf2a1          17 NITFRVYSSQATRIVLYLYSAGYGVQESATYTLSPAG--SGVWAVTVPVSSIKAAGITGAVY-YGYRAWGPN   85 (162)
T ss_dssp             EEEEEEECSSCSEEEEEEESSSSSCCCSEEEECEECS--TTEEEEEEEHHHHHHTTCCSCCE-EEEEEEBTT
T ss_pred             eEEEEEECCCCCEEEEEEEcCCCCCcceeEEEccccc--ccEEEEEecccccccccCCCCcE-EEEEEcccc
Confidence            4688 577899999999866666432    4677654  689999985        566754 888999965

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=95.88  E-value=0.0071  Score=46.22  Aligned_cols=51  Identities=20%  Similarity=0.352  Sum_probs=46.5

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      ..++.++.+-++.+|+..|.++++...|+=|-  ++++|++|.+|+++.++..
T Consensus        83 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~lvGiit~~Dil~~~~~~  133 (139)
T d2o16a3          83 TDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK--DVLVGIITDSDFVTIAINL  133 (139)
T ss_dssp             SCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET--TEEEEEECHHHHHHHHHHH
T ss_pred             cccccccccchHHHHHHHHHHcCceEEEEEEC--CEEEEEEEHHHHHHHHHHH
Confidence            57889999999999999999999999999983  7899999999999988765

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=95.86  E-value=0.0054  Score=46.18  Aligned_cols=55  Identities=18%  Similarity=0.307  Sum_probs=47.2

Q ss_pred             ccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       157 cYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      .=|+|  +..++.++-+.++++|+..|.++++...|+-|.  ++++|++|..|+++.+.
T Consensus         6 V~d~m--~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~--~~~~Givt~~dl~~~~~   60 (127)
T d2ef7a1           6 VKEYM--KTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG--NKPVGIITERDIVKAIG   60 (127)
T ss_dssp             GGGTS--BCSCCEEETTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHH
T ss_pred             HHHhC--CCCCeEECCcCcHHHHHHHHHHcCCceEEeecc--cchhhhcchhHHHHHHH
Confidence            33444  347899999999999999999999999999874  68999999999988765

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.85  E-value=0.0051  Score=45.97  Aligned_cols=50  Identities=16%  Similarity=0.298  Sum_probs=44.6

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      ..++.++.+.++.+|+..|.++++...|+-+.  ++++|++|..|+++.+..
T Consensus         8 ~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~--~~~~Gvit~~Di~~~l~~   57 (120)
T d1pbja3           8 TDVDTIDITASLEDVLRNYVENAKGSSVVVKE--GVRVGIVTTWDVLEAIAE   57 (120)
T ss_dssp             CSCCEEETTCBHHHHHHHHHHHCCCEEEEEET--TEEEEEEEHHHHHHHHHH
T ss_pred             CCCeEECCcCcHHHHHHHHHHcCceEEEEEeC--CcEEEEEEeeeccccccc
Confidence            36778999999999999999999999999873  799999999999987754

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.82  E-value=0.0066  Score=47.10  Aligned_cols=53  Identities=13%  Similarity=0.069  Sum_probs=45.2

Q ss_pred             CCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       164 s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      +..++...-+-++..|+..|.++++..+|+=| +.++++|++|.+|+++.+..-
T Consensus        83 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~~~lvGivT~~Dil~~~~~~  135 (153)
T d2ooxe2          83 FDGVHTCRATDRLDGIFDAIKHSRVHRLFVVD-ENLKLEGILSLADILNYIIYD  135 (153)
T ss_dssp             SSCCCEECTTCBHHHHHHHHHHSCCSEEEEEC-TTCBEEEEEEHHHHHHHHHSC
T ss_pred             cCCCeEECCCCcHHHHHHhhhhceeeEEEEEc-CCCEEEEEEEHHHHHHHHHcC
Confidence            45666777778999999999999999999998 458999999999999877543

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.80  E-value=0.0043  Score=47.08  Aligned_cols=52  Identities=12%  Similarity=0.247  Sum_probs=46.3

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      ..++.++.+-++.+|+..|.++++..+|+=|.. ++++|++|.+|+++.|...
T Consensus        81 ~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~-~~~iGiIt~~Dil~~l~~~  132 (141)
T d3ddja1          81 TNLVTIDELASVNRAAAEMIVKRIGSLLILNKD-NTIRGIITERDLLIALHHI  132 (141)
T ss_dssp             CCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHHcCCCEEEEEccC-CEEEEEEEHHHHHHHHHHH
Confidence            467778889999999999999999999999974 7899999999999987654

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.79  E-value=0.0056  Score=45.74  Aligned_cols=57  Identities=16%  Similarity=0.252  Sum_probs=47.4

Q ss_pred             hccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       154 ~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      .....|++.  .+++.++-+.++.+|+..|.++++...|+-+  .++++|++|.+|+++..
T Consensus        63 ~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~--~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          63 EVKVWEVME--RDLVTISPRATIKEAAEKMVKNVVWRLLVEE--DDEIIGVISATDILRAK  119 (120)
T ss_dssp             TSBHHHHCB--CGGGEECTTSCHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHH
T ss_pred             ceeEeeecc--cccccccchhHHHHHHHHHHHcCCeEEEEEE--CCEEEEEEEHHHHHhcC
Confidence            344556553  4677889999999999999999999999976  47999999999998753

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=95.76  E-value=0.0054  Score=46.20  Aligned_cols=62  Identities=16%  Similarity=0.334  Sum_probs=49.5

Q ss_pred             hccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhc
Q 024154          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG  218 (271)
Q Consensus       154 ~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~  218 (271)
                      ...+.+++..  .++.+..+-++..|+..|.++++..+|+=|. .++++|++|..|+++.|...|
T Consensus        66 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~lvGiit~~Dll~~i~~~~  127 (127)
T d2ef7a1          66 ETKAEEFMTA--SLITIREDSPITGALALMRQFNIRHLPVVDD-KGNLKGIISIRDITRAIDDMF  127 (127)
T ss_dssp             TCBGGGTSEE--CCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHC
T ss_pred             cchhhhhhhh--hccccccccchhHHHHHHHHcCceEEEEEeC-CCeEEEEEEHHHHHHHHHhhC
Confidence            3344555543  4556777789999999999999999999875 589999999999999887654

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.75  E-value=0.0063  Score=46.51  Aligned_cols=51  Identities=16%  Similarity=0.105  Sum_probs=44.4

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      ..++....+-++..|+..|.++++..+|+=| +.++++||+|.+|+|+.|..
T Consensus        92 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1          92 EGVLKCYLHETLEAIINRLVEAEVHRLVVVD-EHDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             CSCCEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHHS
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCceEEEEEc-cCCEEEEEEEHHHHHHHHHh
Confidence            4566778888999999999999999999987 45789999999999997753

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=95.73  E-value=0.0059  Score=47.28  Aligned_cols=50  Identities=20%  Similarity=0.418  Sum_probs=43.1

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      .++.+..+-++..|+..|.++++..+|+=|.+ ++++|++|..|++++|+.
T Consensus        74 ~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~-g~lvGiIt~~Dil~~l~~  123 (144)
T d2yvxa2          74 KVVYVRTDTDQEEVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLEA  123 (144)
T ss_dssp             SCCCEESSCCHHHHHHHHHHSCCSEEEEECSS-CBEEEEEEHHHHHHHHHH
T ss_pred             CCccCCCCChHHHHHHHHHHcCCCEEEEEeEC-CEEEEEEEHHHHHHHHHH
Confidence            34556677899999999999999999999964 899999999999987654

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=95.67  E-value=0.0051  Score=46.87  Aligned_cols=49  Identities=22%  Similarity=0.521  Sum_probs=43.1

Q ss_pred             eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      .+.+..+-++.+|+..|.++++..+|+=|. .+.++|++|.+|+++.|.+
T Consensus        93 ~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~-~g~i~Gvit~~dil~~l~~  141 (145)
T d1o50a3          93 PVYVHMDTPLEEALKLMIDNNIQEMPVVDE-KGEIVGDLNSLEILLALWK  141 (145)
T ss_dssp             CCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHH
T ss_pred             CEEEcCCCCHHHHHHHHHHcCceEEEEEeC-CCeEEEEEEHHHHHHHHHh
Confidence            455677889999999999999999999985 5899999999999998764

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.64  E-value=0.0087  Score=45.36  Aligned_cols=58  Identities=16%  Similarity=0.334  Sum_probs=48.3

Q ss_pred             ccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       155 ~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      ..+.+++-  .+++.++.+-++.+|+..|.++++...|+=+  .++++|++|.+|+++.++.
T Consensus        70 ~~v~~im~--~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~--~~~~vGivt~~Dil~a~~~  127 (132)
T d2yzia1          70 IPVERIMT--RNLITANVNTPLGEVLRKMAEHRIKHILIEE--EGKIVGIFTLSDLLEASRR  127 (132)
T ss_dssp             SBGGGTCB--CSCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             eeEeeccc--ccccccCcchHHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence            34555553  4788899999999999999999999999854  4899999999999987654

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=95.62  E-value=0.0046  Score=46.67  Aligned_cols=49  Identities=22%  Similarity=0.402  Sum_probs=44.1

Q ss_pred             CCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       164 s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      +.+++.++.+.++..|+..|.++++...|+.|  .++++||+|..|+++.+
T Consensus        77 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~~GiIt~~Dil~~~  125 (127)
T d2rc3a1          77 TRQVAYVDLNNTNEDCMALITEMRVRHLPVLD--DGKVIGLLSIGDLVKDA  125 (127)
T ss_dssp             BCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHH
T ss_pred             cceeEEeccCccHHHHHHHHHHCCCcEEEEEE--CCEEEEEEEHHHHHHHH
Confidence            35778888999999999999999999999998  37899999999999855

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.59  E-value=0.0033  Score=47.21  Aligned_cols=47  Identities=21%  Similarity=0.427  Sum_probs=41.8

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI  213 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~i  213 (271)
                      ..++.+.-+-++.+|+..|.++++...|+=|.  ++++||+|.+|+++-
T Consensus        75 ~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~--~~lvGiit~~Dil~~  121 (123)
T d1y5ha3          75 DSIYYVDANASIQEMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARH  121 (123)
T ss_dssp             TCCCCEETTCCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHT
T ss_pred             ccceeeeecchHHHHHHHHHHcCceEEEEEEC--CEEEEEEEHHHHHhh
Confidence            35677888899999999999999999999983  789999999999874

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.50  E-value=0.0087  Score=45.57  Aligned_cols=53  Identities=23%  Similarity=0.245  Sum_probs=42.3

Q ss_pred             CCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          162 PDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       162 P~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      +.+.+.+....+.++.+|+..|.++++..+|+=|.. ++++|++|..|+|+.|.
T Consensus        86 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~-~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          86 DDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDV-GRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             ------CEECTTSBHHHHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHHH
T ss_pred             hcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCC-CeEEEEEEHHHHHHHHh
Confidence            344566777888999999999999999999999854 88999999999998664

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=95.49  E-value=0.0072  Score=45.54  Aligned_cols=49  Identities=18%  Similarity=0.239  Sum_probs=43.1

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~  215 (271)
                      ..++.++-+-++.+|+..|.++++.++|+-|  .++++||+|-.|++..+.
T Consensus        13 ~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~--~~~~vGiit~~Di~~~~~   61 (127)
T d2rc3a1          13 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK--DEKLVGILTERDFSRKSY   61 (127)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHGG
T ss_pred             CccEEECCcCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEccchhhhhh
Confidence            4578888899999999999999999999987  478999999999987543

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.48  E-value=0.0076  Score=45.34  Aligned_cols=51  Identities=22%  Similarity=0.379  Sum_probs=43.9

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      ..++....+.++..|+..|.++++...|+=|. .++++||+|.+|+++.+++
T Consensus        68 ~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~lvGiiT~~Dil~~~~~  118 (126)
T d1zfja4          68 EHLVTAAVGTDLETAERILHEHRIEKLPLVDN-SGRLSGLITIKDIEKVIEF  118 (126)
T ss_dssp             SCCCCEETTCCHHHHHHHHHHTTCSEEEEECT-TSBEEEEEEHHHHHHHHHC
T ss_pred             cceeecCCCCCHHHHHHHHHhcCCcEEEEEcC-CCeEEEEEEHHHHHHHhhC
Confidence            45566777888999999999999999999874 4899999999999998764

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.39  E-value=0.0077  Score=45.13  Aligned_cols=46  Identities=30%  Similarity=0.359  Sum_probs=40.8

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      .++.+..+-++.+|+..|.++++...|+=| +.++++|++|.+|+++
T Consensus        69 ~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd-~~~~liGiit~~dil~  114 (122)
T d2yzqa2          69 DVPVVKENDTLKKAAKLMLEYDYRRVVVVD-SKGKPVGILTVGDIIR  114 (122)
T ss_dssp             CCCEEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHH
T ss_pred             ceeecchhhHHHHHHHHHHHcCcEEEEEEe-CCCEEEEEEEHHHHHH
Confidence            345677788999999999999999999999 5699999999999975

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.08  E-value=0.012  Score=44.41  Aligned_cols=52  Identities=23%  Similarity=0.425  Sum_probs=46.0

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      .+++.++-+.++.+|+..|.++|+.+.|+-|.+ +.++|++|..|++..+...
T Consensus        10 ~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~-~~~~g~i~~~di~~~~~~~   61 (141)
T d3ddja1          10 TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKA   61 (141)
T ss_dssp             CSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHH
T ss_pred             CCCeEEcCcCcHHHHHHHHHHcCCCeeeccccc-Cccccccccccchhhhhcc
Confidence            468899999999999999999999999998765 7899999999999876543

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.02  E-value=0.011  Score=44.46  Aligned_cols=47  Identities=19%  Similarity=0.314  Sum_probs=40.5

Q ss_pred             eEEEcccchHHHHHHHHHHcCCCeeccccCC-CCceeeeechHHHHHH
Q 024154          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDF-KGRFVGVLSALDFILI  213 (271)
Q Consensus       167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~-~~~f~G~lt~tD~i~i  213 (271)
                      .|.+.-+.++.+|+..|.++++.+.|+-|.. .++++|++|..|++..
T Consensus         7 pvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~   54 (126)
T d1zfja4           7 PFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI   54 (126)
T ss_dssp             CCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC
T ss_pred             ceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHh
Confidence            3556677899999999999999999999974 5789999999997643

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.93  E-value=0.0094  Score=45.82  Aligned_cols=58  Identities=24%  Similarity=0.341  Sum_probs=49.0

Q ss_pred             hccccccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHH
Q 024154          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (271)
Q Consensus       154 ~~tcYd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il  214 (271)
                      ...+.+++-  ..++.++.+-++..|+..|.++++.+.|+=|.+ ++++|++|..|+++.|
T Consensus        68 ~~~v~~im~--~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-g~l~Giit~~Dil~~l  125 (142)
T d1pvma4          68 EVPIRLVMR--KPIPKVKSDYDVKDVAAYLSENGLERCAVVDDP-GRVVGIVTLTDLSRYL  125 (142)
T ss_dssp             GSBGGGTSB--SSCCEEETTCBHHHHHHHHHHHTCSEEEEECTT-CCEEEEEEHHHHTTTS
T ss_pred             ccccccccc--cccccccchhhHHHHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHHHH
Confidence            335667664  467889999999999999999999999999965 8999999999998744

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.90  E-value=0.01  Score=44.41  Aligned_cols=51  Identities=20%  Similarity=0.138  Sum_probs=42.6

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      ...+....+-++.+|+..|.++++...|+=| +.++++|++|.+|+++-+..
T Consensus        74 ~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd-~~g~l~Giit~~Dll~~~~~  124 (131)
T d2riha1          74 NSPITVLDTDPVHVAAEKMRRHNIRHVVVVN-KNGELVGVLSIRDLCFERAI  124 (131)
T ss_dssp             BCCCEEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHSCHHH
T ss_pred             ccceeEeeecchHHHHHHHHHCCeEEEEEEc-CCCeEEEEEEHHHHHHHHHH
Confidence            3445566677899999999999999999998 55899999999999964443

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.88  E-value=0.012  Score=46.23  Aligned_cols=53  Identities=13%  Similarity=0.112  Sum_probs=45.9

Q ss_pred             CCCeEEEcccchHHHHHHHHHHcCCCeeccccCC----CCceeeeechHHHHHHHHH
Q 024154          164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF----KGRFVGVLSALDFILILRE  216 (271)
Q Consensus       164 s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~----~~~f~G~lt~tD~i~il~~  216 (271)
                      +..++.++-+-++.+|+..|.++++..+|+-|.+    ..+++||||.+|+++-|..
T Consensus       114 ~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~  170 (179)
T d2ooxe1         114 PPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISM  170 (179)
T ss_dssp             CSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHT
T ss_pred             ccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHH
Confidence            3567888899999999999999999999999864    4589999999999987653

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=94.70  E-value=0.018  Score=42.81  Aligned_cols=49  Identities=24%  Similarity=0.314  Sum_probs=42.4

Q ss_pred             eEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       167 ~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      .+.+..+-++..|+..|.++++..+|+.|.. ++++|++|..|+++.+..
T Consensus        70 ~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~-g~~~Gvit~~dil~~l~~  118 (121)
T d1vr9a3          70 DFFVHEEDNITHALLLFLEHQEPYLPVVDEE-MRLKGAVSLHDFLEALIE  118 (121)
T ss_dssp             TCCEETTSBHHHHHHHHHHCCCSEEEEECTT-CBEEEEEEHHHHHHHHHH
T ss_pred             cEEECCCCCHHHHHHHHHhcCceeeeeECCC-CeEEEEEEHHHHHHHHHH
Confidence            3455677889999999999999999999986 669999999999997753

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.48  E-value=0.0066  Score=45.54  Aligned_cols=48  Identities=13%  Similarity=0.227  Sum_probs=38.3

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI  213 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~i  213 (271)
                      ..++...-+.++..|+..|.+++++.+|+=|.. ++++||+|.+|+++-
T Consensus        71 ~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~-~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          71 EDLVVAPAGITLKEANEILQRSKKGKLPIVNEN-DELVAIIARTDLKKN  118 (120)
T ss_dssp             TTSCCEETTCCHHHHHHHTCSCC---CEEEETT-TEEEEEECHHHHHHH
T ss_pred             cCceEECCCCCHHHHHHHHHHcCccEEEEEcCC-CEEEEEEEHHHhhhc
Confidence            346677777889999999999999999999865 789999999999863

>d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.41  E-value=0.029  Score=42.08  Aligned_cols=55  Identities=16%  Similarity=0.213  Sum_probs=35.1

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCC-C-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCe
Q 024154           23 VRFI-WPNGGRRVSLSGSFTRWSE-P-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE   79 (271)
Q Consensus        23 VtF~-w~~~ak~V~V~GsF~nW~~-~-ipM~k~~~~~g~f~~~~~-LppG~yeYKFiVDG~   79 (271)
                      +.|+ |...|++|.|+--..++.. . .+|.... ..|+|++.+. +.+|.+ |+|.|+|.
T Consensus        19 ~~F~lwAP~A~~V~L~l~~~~~~~~~~~~~~~~~-~~GvW~~~i~~~~~G~~-Y~y~v~~~   77 (115)
T d2fhfa1          19 VTFRVWAPTAQQVELVIYSADKKVIASHPMTRDS-ASGAWSWQGGSDLKGAF-YRYAMTVY   77 (115)
T ss_dssp             EEEEEECTTCSEEEEEEECTTCCEEEEEECEECT-TTCEEEEEECGGGTTCE-EEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEECCCCCccceeeeeEcC-CCCEEEEEECCCCCCCE-EEEEEEcc
Confidence            5666 4668999999743333322 1 2444332 2689999987 677864 77777653

>d3c8da1 b.1.18.20 (A:6-150) Enterochelin esterase {Shigella flexneri 2a str. 2457T [TaxId: 198215]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Enterochelin esterase N-terminal domain-like
domain: Enterochelin esterase
species: Shigella flexneri 2a str. 2457T [TaxId: 198215]

Probab=94.30  E-value=0.14  Score=40.48  Aligned_cols=84  Identities=23%  Similarity=0.301  Sum_probs=58.3

Q ss_pred             cceEEEEEecCC--------CceEEEEeccCCCC----CCCCCCCCCCCCCeEEEEEecCCc-eEEEEEEE-c-------
Q 024154           19 ILVPVRFIWPNG--------GRRVSLSGSFTRWS----EPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYV-D-------   77 (271)
Q Consensus        19 ~~vpVtF~w~~~--------ak~V~V~GsF~nW~----~~ipM~k~~~~~g~f~~~~~LppG-~yeYKFiV-D-------   77 (271)
                      ..+.|||-|...        .+.|+|.+.---.+    ....|++..+ +.+|+.++.||.. +-.|+|+. .       
T Consensus        21 ~~~~VTFlWR~~~~~~~~sa~~~Vyl~~n~vtDh~~~~~~~~m~rl~g-TDVW~~s~~vpad~rgsY~fip~~~~~~~~~   99 (145)
T d3c8da1          21 EMFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQPQSMQRIAG-TDVWQWTTQLNANWRGSYCFIPTERDDIFSA   99 (145)
T ss_dssp             SEEEEEEEEECTTCSTTTCCCCEEEEEETTTC-------CCBCEECTT-SSEEEEEEEEETTCEEEEEEEEESCCSTTCC
T ss_pred             CCEEEEEEEcCccccccccccceEEEecccccccccccChhhhhcCCC-CCeEEEEEEECcccEEEEEEEecCcccCCCc
Confidence            568899999852        35699987665443    2245888764 7899999999996 78999984 1       


Q ss_pred             --C------e-e-------ecCCCCCeee-CCCCccccEEEec
Q 024154           78 --G------E-W-------RHDENQPHVS-GNYGVVNCVYIAV  103 (271)
Q Consensus        78 --G------~-W-------~~Dp~~P~v~-d~~G~~NNvl~V~  103 (271)
                        +      + |       +.||-||... +.-|+-.++++.+
T Consensus       100 ~~~~~~~~R~~wr~l~~~a~~DPlNp~~~~~~~g~~~S~l~lp  142 (145)
T d3c8da1         100 PSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEMP  142 (145)
T ss_dssp             C--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEECT
T ss_pred             CCccHHHHHHHHHHhhhcccCCCCCCCCCcCCCCCcccccccC
Confidence              1      1 1       5688888533 5667777888773

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.27  E-value=0.027  Score=44.05  Aligned_cols=53  Identities=11%  Similarity=0.255  Sum_probs=46.2

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHhccC
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN  220 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~~~~  220 (271)
                      .++.+.-+-++.+|+..|.++|+..+|+=|  .++++||+|.+|+++.|....++
T Consensus       109 ~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d--~g~lvGiIt~~Dil~~l~~~~~~  161 (169)
T d2j9la1         109 SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITKKDVLKHIAQMANQ  161 (169)
T ss_dssp             SCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHHHCC-
T ss_pred             CCEEECCCCcHHHHHHHHHhcCceEEEEEE--CCEEEEEEEHHHHHHHHHHHhcC
Confidence            477888888999999999999999999966  47899999999999988877654

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.07  E-value=0.034  Score=41.39  Aligned_cols=59  Identities=19%  Similarity=0.123  Sum_probs=49.3

Q ss_pred             cccCCCCCCeEEEcccchHHHHHHHHHHcCCCeeccccCC-CCceeeeechHHHHHHHHHhc
Q 024154          158 YELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF-KGRFVGVLSALDFILILRELG  218 (271)
Q Consensus       158 Yd~lP~s~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~-~~~f~G~lt~tD~i~il~~~~  218 (271)
                      -|+|  +...+.+..+.++++|+..|.++++.+.|+-+.+ .++++|++|..|++..+..-.
T Consensus         4 ~dim--~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~   63 (131)
T d2riha1           4 SELL--KRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRL   63 (131)
T ss_dssp             GGGC--CSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTC
T ss_pred             HHhc--cCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccccc
Confidence            3455  3467889999999999999999999999999653 578999999999998776543

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=93.80  E-value=0.018  Score=42.83  Aligned_cols=46  Identities=17%  Similarity=0.302  Sum_probs=41.4

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      .+++++.+-++.+|+..|.+++..++|+-|. .++++|++|..|+++
T Consensus        10 ~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~-~~~~~Gii~~~dl~~   55 (121)
T d1vr9a3          10 DFPMVEESATVRECLHRMRQYQTNECIVKDR-EGHFRGVVNKEDLLD   55 (121)
T ss_dssp             CSCEEETTCBHHHHHHHHHHTTSSEEEEECT-TSBEEEEEEGGGGTT
T ss_pred             CCeEECCCCCHHHHHHhhhhcCcEEEEEEeC-CceeEEEeehhhhhh
Confidence            4568899999999999999999999999884 468999999999975

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=92.86  E-value=0.04  Score=41.26  Aligned_cols=49  Identities=18%  Similarity=0.348  Sum_probs=41.2

Q ss_pred             CCeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~  216 (271)
                      ..++.++.+.++..|+..|.++++  +|+=|. .++|+||+|..|++.-|.+
T Consensus        82 ~~~~~v~~~~~l~~~~~~~~~~~~--l~Vvd~-~~~~~Givt~~dil~~l~~  130 (132)
T d1yava3          82 TDIPRLHINDPIMKGFGMVINNGF--VCVEND-EQVFEGIFTRRVVLKELNK  130 (132)
T ss_dssp             CSCCEEETTSBHHHHHHHTTTCSE--EEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHHHHhCCE--EEEEcc-CCEEEEEEEHHHHHHHHHh
Confidence            357788899999999999998875  677674 4899999999999987765

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.82  E-value=0.015  Score=43.39  Aligned_cols=47  Identities=13%  Similarity=0.320  Sum_probs=28.7

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHH
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI  213 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~i  213 (271)
                      +++.+.-+.++.+|+..|.++++...|+-|. .++|+|++|..|++..
T Consensus        10 ~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-~~~~~G~it~~dl~~~   56 (122)
T d2yzqa2          10 NPVTITLPATRNYALELFKKYKVRSFPVVNK-EGKLVGIISVKRILVN   56 (122)
T ss_dssp             SCCCEESSCC------------CCEEEEECT-TCCEEEEEESSCC---
T ss_pred             CCEEECCcCcHHHHHHHHHHcCCcEEEEEec-cccchhhhhcchhhhh
Confidence            5778899999999999999999999999886 5899999999998853

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=90.76  E-value=0.059  Score=40.14  Aligned_cols=49  Identities=16%  Similarity=0.298  Sum_probs=43.4

Q ss_pred             CeEEEcccchHHHHHHHHHHcCCCeeccccCCCCceeeeechHHHHHHHHHh
Q 024154          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (271)
Q Consensus       166 k~vv~D~~l~v~~Af~al~~~g~~~aplwds~~~~f~G~lt~tD~i~il~~~  217 (271)
                      +.++++.+-++++|+..|.++|+...|+-|.   +++|++|..|++..+...
T Consensus        10 ~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~---~lvg~~~~~~~~~~~~~~   58 (135)
T d3ddja2          10 NPPILSKEDRLGSAFKKINEGGIGRIIVANE---KIEGLLTTRDLLSTVESY   58 (135)
T ss_dssp             SCCEECTTSBHHHHHHHTTGGGCCEEEEESS---SEEEEEEHHHHHGGGTTC
T ss_pred             CCeEECCCCcHHHHHHHHHHhCCeEEEEEec---ceeceeeccchhhhhccc
Confidence            5778999999999999999999999999875   599999999999876443

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=82.87  E-value=0.023  Score=42.38  Aligned_cols=44  Identities=25%  Similarity=0.411  Sum_probs=12.6

Q ss_pred             EEEcccchHHHHHHHHHHcCCCeeccccC--CCCceeeeechHHHH
Q 024154          168 TALDVNLAVKQAFHVLYEQGLPMVPLWDD--FKGRFVGVLSALDFI  211 (271)
Q Consensus       168 vv~D~~l~v~~Af~al~~~g~~~aplwds--~~~~f~G~lt~tD~i  211 (271)
                      |.+.-+-+++.|+..|.++|+.+.|+-|.  ..++++|++|..|+.
T Consensus         7 vtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~   52 (120)
T d1jr1a4           7 VVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDID   52 (120)
T ss_dssp             CC----CCCC--CCBC---------------CTTCCC---------
T ss_pred             EEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeee
Confidence            45566777889999999999999999986  457999999999964

>d1ji1a1 b.1.18.2 (A:1-122) Maltogenic amylase, N-terminal domain N {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Maltogenic amylase, N-terminal domain N
species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]

Probab=82.27  E-value=1.6  Score=32.39  Aligned_cols=57  Identities=11%  Similarity=0.065  Sum_probs=37.1

Q ss_pred             ceEEEEEecC-CCceEEEE-eccCCCCCC-CCCCCCC-CCCC---eEEEEEecCCceEEEEEEE
Q 024154           20 LVPVRFIWPN-GGRRVSLS-GSFTRWSEP-MPMSPSE-GCPA---VFQIICRLPPGHHQYKFYV   76 (271)
Q Consensus        20 ~vpVtF~w~~-~ak~V~V~-GsF~nW~~~-ipM~k~~-~~~g---~f~~~~~LppG~yeYKFiV   76 (271)
                      .++++++=.. +.++|.|. |+--.|... .+|.+.. ...+   .|+++++++.++..|+|++
T Consensus        31 ~v~IRLRt~~~dv~~V~l~~~d~~~~~~~~~~m~~~~~~~~~~fdywea~i~~~~~~~~Y~F~l   94 (122)
T d1ji1a1          31 SVTLKLRTFKGDITSANIKYWDTADNAFHWVPMVWDSNDPTGTFDYWKGTIPASPSIKYYRFQI   94 (122)
T ss_dssp             CEEEEEEEETTCCSEEEEEEEETTTTEEEEEECEEEEECTTSSEEEEEEEECCCSSCEEEEEEE
T ss_pred             EEEEEEEcccCCccEEEEEEecCCCCceeeEEEEEEeccCCCcEEEEEEEEEcCCCeEEEEEEE
Confidence            4566666543 57889887 443355432 4565431 1122   7899999999999999998

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=81.55  E-value=0.29  Score=37.10  Aligned_cols=47  Identities=26%  Similarity=0.398  Sum_probs=39.5

Q ss_pred             CCeEEEcccchHHHHHHHHHHcC-----CCeeccccCCCCceeeeechHHHHH
Q 024154          165 GKVTALDVNLAVKQAFHVLYEQG-----LPMVPLWDDFKGRFVGVLSALDFIL  212 (271)
Q Consensus       165 ~k~vv~D~~l~v~~Af~al~~~g-----~~~aplwds~~~~f~G~lt~tD~i~  212 (271)
                      ..++.+..+.+|.+|+..|.+++     +...|+=|.. ++++|+++..|++.
T Consensus         9 ~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~dl~~   60 (144)
T d2yvxa2           9 PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIV   60 (144)
T ss_dssp             SCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTT-CBBCCBCBHHHHTT
T ss_pred             CCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCC-CCEecccchhhhhh
Confidence            36788999999999999998886     6677777655 88999999999754

>d1wzla1 b.1.18.2 (A:1-120) Maltogenic amylase, N-terminal domain N {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Maltogenic amylase, N-terminal domain N
species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]

Probab=80.37  E-value=1.6  Score=32.50  Aligned_cols=56  Identities=11%  Similarity=0.067  Sum_probs=37.6

Q ss_pred             ceEEEEEecC-CCceEEEE-ec---cCCCCC-CCCCCCCCCCCC---eEEEEEecCCceEEEEEEE
Q 024154           20 LVPVRFIWPN-GGRRVSLS-GS---FTRWSE-PMPMSPSEGCPA---VFQIICRLPPGHHQYKFYV   76 (271)
Q Consensus        20 ~vpVtF~w~~-~ak~V~V~-Gs---F~nW~~-~ipM~k~~~~~g---~f~~~~~LppG~yeYKFiV   76 (271)
                      .+.++|+=.. +.++|.|. |+   |+.+.. ..+|.+.. +++   .|++++.++..+.+|.|.+
T Consensus        22 ~l~IRLRT~k~dv~~V~l~~gDpy~~~~~~~~~~~M~k~~-s~~~fDywe~~i~~~~~r~~Y~F~l   86 (120)
T d1wzla1          22 QLRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAG-SDERFDYFEALLECSTKRVKYVFLL   86 (120)
T ss_dssp             EEEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEE-ECSSEEEEEEEEECTTSCEEEEEEE
T ss_pred             EEEEEEEeccCCccEEEEEEcCCccCCCCCEEEEEEEEec-cCCCeeEEEEEEECCCCeEEEEEEE
Confidence            4555555443 57888887 65   333222 25898753 233   7999999988999999988