Citrus Sinensis ID: 024176

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
MIFLLLLSIFLPSASSSIPVDPPVSFSFSSFNPKSCSDGSLICMGAVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWPAMISTTFTIRISPYPNTTDSADGMTFVFATDTSPPTENSAGGNLGLSNGVSQLAVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPIPLSETIPSSVYVGFTASTGPDFSESHQVLDWTFTTFPLPSSSLEEQNLAMPI
cHHHHHHHHHHHHHcccccccccEEEEEccccccccccccEEEEEEEEEcccEEEEccccccccccccccccEEEEEEcccEEEcccccEEEEEEEEEccccccccccEEEEEEEEcccccccccccccccccccccEEEEEEEcccccccccccccccEEEEcccccccccccccccEEEcccccEEEEEEEEccccEEEEEEEEcccccEEEEEEEEcccccccccEEEEEEcccccccccEEEEEEEEEEcccccccccccccccccc
cHHHHHHHHHHHHHHHHcccccccEEEEccccccccccccEEEccccEccccEEEEEccccccccccccEEccccEEccccEEEEcccEEEEEEEEEEccccccccccEEEEEEEcccccccccccccEEEEEccccEEEEEEEccccHHHccccccEEEEEEcccccEEcccccccccEEccccEEEEEEEEccccEEEEEEEEccccccccEEEEEEcHHHHccccEEEEEEccccccccccEEEEEEEEcccccccccccHHHHcccc
MIFLLLLSIflpsasssipvdppvsfsfssfnpkscsdgslicmgavtpsygylsltsdpspespdqlplkkvgrvlysqpvtawpaMISTTFTirispypnttdsadgmtfvfatdtspptensaggnlglsngVSQLAVELDtykndywsdpdanhmgidianltsnpaksldssgidlksgrpiqvhIYYDGWTKILYVYVAYAGnplqklierpiplsetipssvyvgftastgpdfseshqvldwtfttfplpsssleeqnlampi
MIFLLLLSIFLPSASSSIPVDPPVSFSFSSFNPKSCSDGSLICMGAVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWPAMISTTFTIRISPYPNTTDSADGMTFVFATDTSPptensaggnlgLSNGVSQLAVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDssgidlksgrpIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPIPLSETIPSSVYVGFTASTGPDFSESHQVLDWTFTTfplpsssleeqnlampi
MifllllsiflpsasssipvdppvsfsfssfnpkscsDGSLICMGAVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWPAMISTTFTIRISPYPNTTDSADGMTFVFATDTSPPTEnsaggnlglsngvsqlAVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPIPLSETIPSSVYVGFTASTGPDFSESHQVLDWTFTTFPLPSSSLEEQNLAMPI
*IFLLLLSIFLPS**********************CSDGSLICMGAVTPSYGYL*****************KVGRVLYSQPVTAWPAMISTTFTIRISPYPNTTDSADGMTFVFA*******************GVSQLAVELDTYKNDYWSDPDANHMGIDIAN****************KSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPIPLSETIPSSVYVGFTASTGPDFSESHQVLDWTFTTFP***************
MIFLLLLSIFLPSASSSIPVDPPVSFSFSSFNPKSCSDGSLICMGAVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWPAMISTTFTIRISPYPNTTDSADGMTFVFATDTS**********LGLSNGVSQLAVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPIPLSETIPSSVYVGFTASTGPDFSESHQVLDWTF*************NLAMPI
MIFLLLLSIFLPSASSSIPVDPPVSFSFSSFNPKSCSDGSLICMGAVTPSYGYLSL***********LPLKKVGRVLYSQPVTAWPAMISTTFTIRISPYPNTTDSADGMTFVFATDTSPPTENSAGGNLGLSNGVSQLAVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPIPLSETIPSSVYVGFTASTGPDFSESHQVLDWTFTTFPLPSSS**********
MIFLLLLSIFLPSASSSIPVDPPVSFSFSSFNPKSCSDGSLICMGAVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWPAMISTTFTIRISPYPNTTDSADGMTFVFATDTSPPTENSAGGNLGLSNGVSQLAVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPIPLSETIPSSVYVGFTASTGPDFSESHQVLDWTFTTFPLPSSSLEEQN*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIFLLLLSIFLPSASSSIPVDPPVSFSFSSFNPKSCSDGSLICMGAVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWPAMISTTFTIRISPYPNTTDSADGMTFVFATDTSPPTENSAGGNLGLSNGVSQLAVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPIPLSETIPSSVYVGFTASTGPDFSESHQVLDWTFTTFPLPSSSLEEQNLAMPI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query271 2.2.26 [Sep-21-2011]
P81371240 Seed lectin OS=Vatairea m N/A no 0.785 0.887 0.330 3e-22
Q01806277 Lectin 1 OS=Medicago trun N/A no 0.822 0.805 0.315 1e-21
Q9FG33 652 Probable L-type lectin-do yes no 0.797 0.331 0.337 1e-21
P05045275 Seed lectin subunit I OS= N/A no 0.800 0.789 0.324 3e-21
P19588275 Lectin DB58 OS=Dolichos b N/A no 0.819 0.807 0.318 8e-21
B3EWQ9281 Lectin alpha chain OS=Lab N/A no 0.892 0.861 0.298 9e-21
Q93WH6275 Lectin OS=Lens culinaris N/A no 0.830 0.818 0.328 1e-20
Q8VXF2275 Lectin OS=Lens culinaris N/A no 0.830 0.818 0.328 1e-20
Q93X49275 Lectin OS=Lens culinaris N/A no 0.830 0.818 0.328 3e-20
P05088275 Erythroagglutinating phyt N/A no 0.841 0.829 0.325 3e-20
>sp|P81371|LECS_VATMA Seed lectin OS=Vatairea macrocarpa PE=1 SV=1 Back     alignment and function desciption
 Score =  105 bits (263), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 122/245 (49%), Gaps = 32/245 (13%)

Query: 24  VSFSFSSFNPKSCSDGSLICMG-AVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPV 82
           VSFSF+ FNP       +I  G A+  S G L LT     +  D      +GR LY+ P+
Sbjct: 4   VSFSFTKFNPNP---KDIILQGDALVTSKGKLQLTKVKDGKPVDH----SLGRALYAAPI 56

Query: 83  TAWP------AMISTTFTIRISPYPNTTDSADGMTFVFAT-DTSPPTENSAGGNLGLSN- 134
             W       A  +T+F+  +   P+ + +ADG+ F  A  DT P  +   GG LGL N 
Sbjct: 57  HIWDDSTDRVASFATSFSFVVEA-PDESKTADGIAFFLAPPDTQPQKD---GGFLGLFND 112

Query: 135 ---GVSQLAVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHI 191
               +  +AVE DT+ N +  DP A H+GI++     N  +S+       ++G+   V+I
Sbjct: 113 SNKSIQTVAVEFDTFSNTW--DPSARHIGINV-----NSIESMKYVKWGWENGKVANVYI 165

Query: 192 YYDGWTKILYVYVAYAGNPLQKLIERPIPLSETIPSSVYVGFTASTG--PDFSESHQVLD 249
            Y+  TK L   + Y  N    ++   + L   +P  V VGF+A++G   D  E+H VLD
Sbjct: 166 SYEASTKTLTASLTYPSNATSYIVSANVDLKSALPEWVRVGFSATSGLSRDHVETHDVLD 225

Query: 250 WTFTT 254
           W+FT+
Sbjct: 226 WSFTS 230
Lectin that binds galactose.
Vatairea macrocarpa (taxid: 77050)
>sp|Q01806|LEC1_MEDTR Lectin 1 OS=Medicago truncatula GN=LEC1 PE=3 SV=1 Back     alignment and function description
>sp|Q9FG33|LRKS5_ARATH Probable L-type lectin-domain containing receptor kinase S.5 OS=Arabidopsis thaliana GN=LECRKS5 PE=2 SV=1 Back     alignment and function description
>sp|P05045|LEC1_DOLBI Seed lectin subunit I OS=Dolichos biflorus PE=1 SV=2 Back     alignment and function description
>sp|P19588|LEC5_DOLBI Lectin DB58 OS=Dolichos biflorus PE=1 SV=2 Back     alignment and function description
>sp|B3EWQ9|LECA2_LABPU Lectin alpha chain OS=Lablab purpureus PE=1 SV=1 Back     alignment and function description
>sp|Q93WH6|LEC_LENCC Lectin OS=Lens culinaris subsp. culinaris PE=3 SV=2 Back     alignment and function description
>sp|Q8VXF2|LEC_LENCT Lectin OS=Lens culinaris subsp. tomentosus PE=3 SV=2 Back     alignment and function description
>sp|Q93X49|LEC_LENCO Lectin OS=Lens culinaris subsp. orientalis PE=3 SV=2 Back     alignment and function description
>sp|P05088|PHAE_PHAVU Erythroagglutinating phytohemagglutinin OS=Phaseolus vulgaris GN=DLEC1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query271
359476128 661 PREDICTED: probable L-type lectin-domain 0.940 0.385 0.525 3e-67
11596188268 lectin-related protein precursor [Citrus 0.966 0.977 0.537 4e-65
255548946 584 conserved hypothetical protein [Ricinus 0.808 0.375 0.452 3e-48
296082025 569 unnamed protein product [Vitis vinifera] 0.453 0.216 0.582 9e-33
22208830280 lectin [Helicotropis linearis var. linea 0.841 0.814 0.338 3e-23
54019703278 lectin precursor [Phaseolus glabellus] 0.841 0.820 0.330 6e-22
414885078 758 TPA: putative lectin-domain receptor-lik 0.848 0.303 0.320 9e-22
115477264 739 Os08g0514000 [Oryza sativa Japonica Grou 0.870 0.319 0.32 9e-22
125603999 682 hypothetical protein OsJ_27920 [Oryza sa 0.870 0.346 0.32 1e-21
242048998 733 hypothetical protein SORBIDRAFT_02g02234 0.911 0.336 0.311 2e-21
>gi|359476128|ref|XP_002282629.2| PREDICTED: probable L-type lectin-domain containing receptor kinase S.7-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 143/272 (52%), Positives = 181/272 (66%), Gaps = 17/272 (6%)

Query: 1   MIFLLLLSIFLPSASSSIPVDPPVSFSFSSFNPKSCSDGS-LICMGAVTPSYGYLSLTSD 59
           M  LL++  FL  A+ S+    P+SFSFSSF+P +C  GS LICMG+VT   GYL++T  
Sbjct: 1   MFMLLVVCGFLNQAAFSLA--EPISFSFSSFDPGNCGTGSKLICMGSVTAGEGYLNITPQ 58

Query: 60  PSPESPDQLPL---KKVGRVLYSQPVTAWPAMISTTFTIRISPYPNTTDSADGMTFVFAT 116
           P P   +  P      VGRVLY  PV AWPA+I+TTFT+RISP+PN+T S DGM F+ A 
Sbjct: 59  P-PHENETSPTSSTNMVGRVLYRHPVQAWPALITTTFTVRISPFPNSTGSGDGMAFIMAQ 117

Query: 117 DTSPPTENSAGGNLGLSNG------VSQLAVELDTYKNDYWSDPDANHMGIDIANLTS-N 169
           D+ P    S G  LG+ +       V QLAVELDTY N++  DPDANH+GID  ++    
Sbjct: 118 DSQPSPAGSFGSFLGILDRSTEGGVVRQLAVELDTYMNEF--DPDANHIGIDTTSIAIPI 175

Query: 170 PAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPIPLSETIPSSV 229
            AKSL  +G+DLKSGR ++V I YDGW + L++ V YAGNPL   +   I LS+T+PSSV
Sbjct: 176 AAKSLSGTGVDLKSGREVKVKIDYDGWRETLHISVGYAGNPLLSFLNHSIALSDTVPSSV 235

Query: 230 YVGFTASTGPDFSESHQVLDWTFTTFPLPSSS 261
           YVGFT STG   SE+HQVLDW FT+ P+  SS
Sbjct: 236 YVGFTGSTGT-VSETHQVLDWAFTSIPITCSS 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|11596188|gb|AAG38522.1|AF283537_1 lectin-related protein precursor [Citrus x paradisi] Back     alignment and taxonomy information
>gi|255548946|ref|XP_002515529.1| conserved hypothetical protein [Ricinus communis] gi|223545473|gb|EEF46978.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|296082025|emb|CBI21030.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|22208830|emb|CAD43279.1| lectin [Helicotropis linearis var. linearis] Back     alignment and taxonomy information
>gi|54019703|emb|CAH60217.1| lectin precursor [Phaseolus glabellus] Back     alignment and taxonomy information
>gi|414885078|tpg|DAA61092.1| TPA: putative lectin-domain receptor-like protein kinase family protein [Zea mays] Back     alignment and taxonomy information
>gi|115477264|ref|NP_001062228.1| Os08g0514000 [Oryza sativa Japonica Group] gi|42408815|dbj|BAD10076.1| putative lectin-like protein kinase [Oryza sativa Japonica Group] gi|113624197|dbj|BAF24142.1| Os08g0514000 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|125603999|gb|EAZ43324.1| hypothetical protein OsJ_27920 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|242048998|ref|XP_002462243.1| hypothetical protein SORBIDRAFT_02g022340 [Sorghum bicolor] gi|241925620|gb|EER98764.1| hypothetical protein SORBIDRAFT_02g022340 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query271
TAIR|locus:2170224 652 AT5G06740 [Arabidopsis thalian 0.715 0.297 0.319 1.9e-18
TAIR|locus:2143528 711 AT5G03140 [Arabidopsis thalian 0.800 0.305 0.295 1e-17
UNIPROTKB|P02870275 P02870 "Lectin" [Lens culinari 0.634 0.625 0.314 1.4e-16
TAIR|locus:2083986 715 AT3G53380 [Arabidopsis thalian 0.763 0.289 0.285 3.2e-16
UNIPROTKB|P42088240 P42088 "Lectin" [Leucomphalos 0.738 0.833 0.311 7.7e-16
TAIR|locus:2162212 681 AT5G55830 [Arabidopsis thalian 0.738 0.293 0.289 2.8e-15
TAIR|locus:2144025 657 AT5G60280 [Arabidopsis thalian 0.712 0.293 0.310 9e-15
TAIR|locus:2165740 691 AT5G42120 [Arabidopsis thalian 0.752 0.295 0.289 9.7e-15
TAIR|locus:2020608 666 AT1G70110 [Arabidopsis thalian 0.771 0.313 0.304 4e-14
TAIR|locus:2138381 686 AT4G04960 [Arabidopsis thalian 0.656 0.259 0.306 8.9e-14
TAIR|locus:2170224 AT5G06740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 232 (86.7 bits), Expect = 1.9e-18, P = 1.9e-18
 Identities = 69/216 (31%), Positives = 103/216 (47%)

Query:    51 YGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWP----AMISTTFTIRISPYPNTTD- 105
             +G + +T D +   P      + GR LY +P   W     A  +TTF I IS   N TD 
Sbjct:    49 FGAIQVTPDVTG-GPGGTIANQAGRALYKKPFRLWSKHKSATFNTTFVINIS---NKTDP 104

Query:   106 SADGMTFVFATDTSPPTEXXXX------XXXXXXXXXXXXAVELDTYKNDYWSDPDANHM 159
               +G+ FV   + + P                        +VE DT K+ +  D D NH+
Sbjct:   105 GGEGLAFVLTPEETAPQNSSGMWLGMVNERTNRNNESRIVSVEFDTRKS-HSDDLDGNHV 163

Query:   160 GIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQK---LIE 216
              +++ N+ S   +SL   GI + SG  +  H+ YDG  K L VYV+   +  ++   +  
Sbjct:   164 ALNVNNINSVVQESLSGRGIKIDSGLDLTAHVRYDG--KNLSVYVSRNLDVFEQRNLVFS 221

Query:   217 RPIPLSETIPSSVYVGFTASTGPDFSESHQVLDWTF 252
             R I LS  +P +VYVGFTAST  +F+E + V  W+F
Sbjct:   222 RAIDLSAYLPETVYVGFTASTS-NFTELNCVRSWSF 256
GO:0004672 "protein kinase activity" evidence=IEA
GO:0004674 "protein serine/threonine kinase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006468 "protein phosphorylation" evidence=IEA
GO:0016301 "kinase activity" evidence=ISS
GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=ISS
GO:0000041 "transition metal ion transport" evidence=RCA
TAIR|locus:2143528 AT5G03140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P02870 P02870 "Lectin" [Lens culinaris (taxid:3864)] Back     alignment and assigned GO terms
TAIR|locus:2083986 AT3G53380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P42088 P42088 "Lectin" [Leucomphalos mildbraedii (taxid:28956)] Back     alignment and assigned GO terms
TAIR|locus:2162212 AT5G55830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144025 AT5G60280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165740 AT5G42120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020608 AT1G70110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138381 AT4G04960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00032635001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (599 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query271
cd06899236 cd06899, lectin_legume_LecRK_Arcelin_ConA, legume 2e-64
pfam00139231 pfam00139, Lectin_legB, Legume lectin domain 7e-60
cd01951223 cd01951, lectin_L-type, legume lectins 1e-33
cd07308218 cd07308, lectin_leg-like, legume-like lectins: ERG 5e-05
>gnl|CDD|173887 cd06899, lectin_legume_LecRK_Arcelin_ConA, legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor Back     alignment and domain information 
 Score =  200 bits (512), Expect = 2e-64
 Identities = 102/248 (41%), Positives = 137/248 (55%), Gaps = 29/248 (11%)

Query: 24  VSFSFSSFNPKSCSDGSLICMGAVTPSY-GYLSLTSDPSPESPDQLPLKKVGRVLYSQPV 82
           +SF+F+ F+       +L   G  T S  G L LT+D SP S        VGR LYS+PV
Sbjct: 1   LSFNFNGFSS---DQSNLTLQGDATISSNGALQLTNDTSPAS-------SVGRALYSKPV 50

Query: 83  TAW------PAMISTTFTIRISPYPNTTDSADGMTFVFATDTSPPTENSAGGNLGLSN-- 134
             W       A  ST+F+  I+P PN +   DG+ F  A   S P   S+GG LGL N  
Sbjct: 51  RLWDSTTGKVASFSTSFSFSITP-PNPSLGGDGLAFFLAPTDSLP-PASSGGYLGLFNSS 108

Query: 135 --GVSQ---LAVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQV 189
             G S    +AVE DT++N  + DPD NH+GID+ +L S  A   D  G  LKSG+P+Q 
Sbjct: 109 NNGNSSNHIVAVEFDTFQNPEFGDPDDNHVGIDVNSLVSVKAGYWDDDGGKLKSGKPMQA 168

Query: 190 HIYYDGWTKILYVYVAYAGNPLQK--LIERPIPLSETIPSSVYVGFTASTGPDFSESHQV 247
            I YD  +K L V +AY+G    K  L+  P+ LS+ +P  VYVGF+ASTG   +E H +
Sbjct: 169 WIDYDSSSKRLSVTLAYSGVAKPKKPLLSYPVDLSKVLPEEVYVGFSASTG-LLTELHYI 227

Query: 248 LDWTFTTF 255
           L W+F++ 
Sbjct: 228 LSWSFSSN 235

This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by binding glycans on the cell surface. Medically, PHA is used as a mitogen to trigger cell division in T-lymphocytes and to activate latent HIV-1 from human peripheral lymphocytes. Plant L-type lectins are primarily found in the seeds of leguminous plants where they constitute about 10% of the total soluble protein of the seed extracts. They are synthesized during seed development several weeks after flowering and transported to the vacuole where they become condensed into specialized vesicles called protein bodies. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely. Length = 236
>gnl|CDD|215744 pfam00139, Lectin_legB, Legume lectin domain Back     alignment and domain information
>gnl|CDD|173886 cd01951, lectin_L-type, legume lectins Back     alignment and domain information
>gnl|CDD|173892 cd07308, lectin_leg-like, legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 271
cd06899236 lectin_legume_LecRK_Arcelin_ConA legume lectins, l 100.0
PF00139236 Lectin_legB: Legume lectin domain; InterPro: IPR00 100.0
cd01951223 lectin_L-type legume lectins. The L-type (legume-t 100.0
cd07308218 lectin_leg-like legume-like lectins: ERGIC-53, ERG 99.97
cd06901248 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembr 99.95
cd06902225 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 tran 99.95
cd06903215 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmem 99.9
PF03388229 Lectin_leg-like: Legume-like lectin family; InterP 99.9
KOG3838 497 consensus Mannose lectin ERGIC-53, involved in gly 99.85
KOG3839351 consensus Lectin VIP36, involved in the transport 99.79
cd06900255 lectin_VcfQ VcfQ bacterial pilus biogenesis protei 99.41
cd00110151 LamG Laminin G domain; Laminin G-like domains are 89.7
KOG3514 1591 consensus Neurexin III-alpha [Signal transduction 89.58
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=6.3e-55  Score=387.87  Aligned_cols=220  Identities=44%  Similarity=0.724  Sum_probs=195.3

Q ss_pred             eeEEeCCCCCCCCCCCCeEEecceEEe-CCeEEecCCCCCCCCCCCCCCcEEEEEecCceeecC------CCeeEEEEEE
Q 024176           24 VSFSFSSFNPKSCSDGSLICMGAVTPS-YGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWP------AMISTTFTIR   96 (271)
Q Consensus        24 ~~F~f~~F~~~~~~~~~l~l~G~A~~~-~g~l~LT~~~~~~~~~~~~~~~~G~~~y~~Pi~l~~------~sFst~F~F~   96 (271)
                      ++|+|++|....   .+|.|+|+|.+. ++.||||++..       ..+++|||||++||++|+      ++|+|+|+|+
T Consensus         1 ~~f~f~~f~~~~---~~l~l~G~A~~~~~~~i~LT~~~~-------~~~~~G~v~y~~pi~l~~~~~~~~~sFst~F~F~   70 (236)
T cd06899           1 LSFNFNGFSSDQ---SNLTLQGDATISSNGALQLTNDTS-------PASSVGRALYSKPVRLWDSTTGKVASFSTSFSFS   70 (236)
T ss_pred             CceecCCCCCCC---CCEEEecceEcCCCCeEEecCCCC-------CCcceEEEEeCCCEEeecCCCCCceeEEEEEEEE
Confidence            479999998743   589999999998 89999999861       258999999999999997      5899999999


Q ss_pred             EecCCCCCCCCCceEEEEecCCCCCCCCCCCCCCCCCC-------CCceEEEEEeccCCCCCCCCCCCceEEecCCCCcc
Q 024176           97 ISPYPNTTDSADGMTFVFATDTSPPTENSAGGNLGLSN-------GVSQLAVELDTYKNDYWSDPDANHMGIDIANLTSN  169 (271)
Q Consensus        97 I~~~~~~~~~gdGlAF~l~~~~~~~~~g~~G~~lGl~~-------~~~~vAVEFDT~~N~~~~Dp~~nHvgi~~ns~~s~  169 (271)
                      |.+. ....+||||||||+|.+.. +.+..|++||+.+       .++.||||||||+|.+++||+.+||||++|++.|.
T Consensus        71 i~~~-~~~~~gdGlAF~i~~~~~~-~~~~~G~~lG~~~~~~~~~~~~~~vAVEFDT~~n~~~~D~~~nHigIdvn~~~S~  148 (236)
T cd06899          71 ITPP-NPSLGGDGLAFFLAPTDSL-PPASSGGYLGLFNSSNNGNSSNHIVAVEFDTFQNPEFGDPDDNHVGIDVNSLVSV  148 (236)
T ss_pred             EEcC-CCCCCCCeEEEEEecCCCC-CCCCCcceeeeecCCCCCCcccceEEEEeecccCcccCCCCCCeEEEEcCCcccc
Confidence            9986 4567899999999998743 3468899999986       45799999999999988999999999999999888


Q ss_pred             ccccCCCCCCcCCCCCcEEEEEEEeCcceEEEEEEEeCC--CCCceEEEEeecCCCCCCCceEEEEEeecCCCCccceEE
Q 024176          170 PAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAG--NPLQKLIERPIPLSETIPSSVYVGFTASTGPDFSESHQV  247 (271)
Q Consensus       170 ~~~~~~~~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~~--~p~~~~ls~~vdL~~~l~~~~yvGFSASTG~~~~~~h~I  247 (271)
                      .+..+......|.+|+.++|||+|++.+++|+|+|.+..  +|..|+++..+||+.+|+++|||||||+|| +..|.|+|
T Consensus       149 ~~~~~~~~~~~l~~g~~~~v~I~Y~~~~~~L~V~l~~~~~~~~~~~~ls~~vdL~~~l~~~~~vGFSasTG-~~~~~h~i  227 (236)
T cd06899         149 KAGYWDDDGGKLKSGKPMQAWIDYDSSSKRLSVTLAYSGVAKPKKPLLSYPVDLSKVLPEEVYVGFSASTG-LLTELHYI  227 (236)
T ss_pred             eeeccccccccccCCCeEEEEEEEcCCCCEEEEEEEeCCCCCCcCCEEEEeccHHHhCCCceEEEEEeEcC-CCcceEEE
Confidence            777775444568899999999999999999999999864  688999999999999999999999999999 99999999


Q ss_pred             EEEEEEecC
Q 024176          248 LDWTFTTFP  256 (271)
Q Consensus       248 ~sWsf~~~~  256 (271)
                      ++|+|++++
T Consensus       228 ~sWsF~s~~  236 (236)
T cd06899         228 LSWSFSSNG  236 (236)
T ss_pred             EEEEEEcCC
Confidence            999999763

This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported Back     alignment and domain information
>cd01951 lectin_L-type legume lectins Back     alignment and domain information
>cd07308 lectin_leg-like legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47 Back     alignment and domain information
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain Back     alignment and domain information
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain Back     alignment and domain information
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain Back     alignment and domain information
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates Back     alignment and domain information
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd06900 lectin_VcfQ VcfQ bacterial pilus biogenesis protein, lectin domain Back     alignment and domain information
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans Back     alignment and domain information
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query271
3usu_A256 Crystal Structure Of Butea Monosperma Seed Lectin L 1e-18
3usu_B242 Crystal Structure Of Butea Monosperma Seed Lectin L 2e-18
2bqp_A234 The Structure Of The Pea Lectin-D-Glucopyranose Com 7e-18
3ujo_A281 Galactose-Specific Seed Lectin From Dolichos Lablab 3e-17
1lul_A253 Db58, A Legume Lectin From Dolichos Biflorus Length 7e-17
1bjq_A253 The Dolichos Biflorus Seed Lectin In Complex With A 2e-16
2sba_A253 Soybean Agglutinin Complexed With 2,6-Pentasacchari 2e-16
1fat_A252 Phytohemagglutinin-L Length = 252 9e-16
3ipv_B239 Crystal Structure Of Spatholobus Parviflorus Seed L 3e-15
1g8w_A233 Improved Structure Of Phytohemagglutinin-L From The 4e-15
3ipv_A251 Crystal Structure Of Spatholobus Parviflorus Seed L 2e-14
2fmd_A240 Structural Basis Of Carbohydrate Recognition By Bow 2e-14
1fay_A238 Winged Bean Acidic Lectin Complexed With Methyl-Alp 3e-14
1wbf_A242 Winged Bean Lectin, Saccharide Free Form Length = 2 4e-13
2e7q_A237 Crystal Structure Of Basic Winged Bean Lectin In Co 4e-13
1wbl_A241 Winged Bean Lectin Complexed With Methyl-Alpha-D-Ga 4e-13
1gz9_A239 High-Resolution Crystal Structure Of Erythrina Cris 1e-12
1qnw_A242 Lectin Ii From Ulex Europaeus Length = 242 1e-12
1hql_A257 The Xenograft Antigen In Complex With The B4 Isolec 1e-12
1gnz_A257 Lectin I-B4 From Griffonia Simplicifolia (Gs I-B4)m 1e-12
1fny_A237 Legume Lectin Of The Bark Of Robinia Pseudoacacia. 2e-12
2pel_A236 Peanut Lectin Length = 236 3e-12
1bzw_A232 Peanut Lectin Complexed With C-Lactose Length = 232 3e-12
3n35_A242 Erythrina Corallodendron Lectin Mutant (Y106g) With 4e-12
1fyu_A255 Crystal Structure Of Erythrina Corallodendron Lecti 7e-12
1sfy_A239 Crystal Structure Of Recombinant Erythrina Corallod 7e-12
1uzy_A242 Erythrina Crystagalli Lectin Length = 242 7e-12
1ax0_A239 Erythrina Corallodendron Lectin In Complex With N-A 8e-12
1dbn_A239 Maackia Amurensis Leukoagglutinin (Lectin) With Sia 1e-11
1lte_A239 Structure Of A Legume Lectin With An Ordered N-Link 2e-11
2je9_A 239 Crystal Structure Of Recombinant Dioclea Grandiflor 3e-11
3sh3_A 237 Crystal Structure Of A Pro-Inflammatory Lectin From 3e-11
2gdf_A 237 Crystal Structure Of Dioclea Violacea Seed Lectin L 4e-11
1gsl_A243 Lectin (Fourth Isolated From (Griffonia Simplicifol 4e-11
2jec_A 239 Crystal Structure Of Recombinant Dioclea Grandiflor 6e-11
2ovu_A 237 Crystal Strucure Of A Lectin From Canavalia Gladiat 6e-11
2zbj_A 237 Crystal Structure Of Dioclea Rostrata Lectin Length 8e-11
3zvx_A261 Structure Of The Lectin From Platypodium Elegans In 9e-11
1mvq_A 236 Cratylia Mollis Lectin (Isoform 1) In Complex With 1e-10
1wuv_A 237 Crystal Structure Of Native Canavalia Gladiata Lect 2e-10
1dgl_A 237 Lectin From Dioclea Grandiflora Complexed To Triman 2e-10
3u4x_A 236 Crystal Structure Of A Lectin From Camptosema Pedic 2e-10
1lgc_A181 Interaction Of A Legume Lectin With The N2 Fragment 2e-10
3a0k_A 237 Crystal Structure Of An Antiflamatory Legume Lectin 2e-10
2ctv_A 237 High Resolution Crystallographic Studies Of Native 3e-10
2yz4_A 237 The Neutron Structure Of Concanavalin A At 2.2 Angs 3e-10
2d3p_A 236 Cratylia Floribunda Seed Lectin Crystallized At Bas 3e-10
1azd_A 237 Concanavalin From Canavalia Brasiliensis Length = 2 3e-10
2jdz_A 239 Crystal Structure Of Recombinant Dioclea Guianensis 3e-10
2ow4_A 237 Crystal Structure Of A Lectin From Canavalia Mariti 4e-10
2je7_A 239 Crystal Structure Of Recombinant Dioclea Guianensis 4e-10
2cwm_A 237 Native Crystal Structure Of No Releasing Inductive 4e-10
1lgb_A181 Interaction Of A Legume Lectin With The N2 Fragment 4e-10
1h9p_A 237 Crystal Structure Of Dioclea Guianensis Seed Lectin 4e-10
1h9w_A 237 Native Dioclea Guianensis Seed Lectin Length = 237 4e-10
3rrd_A 237 Native Structure Of Dioclea Virgata Lectin Length = 5e-10
1q8o_A252 Pterocartpus Angolensis Lectin Pal In Complex With 8e-10
1n3o_A252 Pterocarcpus Angolensis Lectin In Complex With Alph 8e-10
1ofs_A187 Pea Lectin-sucrose Complex Length = 187 1e-09
1lof_C181 X-Ray Structure Of A Biantennary Octasaccharide-Lec 1e-09
2ltn_A181 Design, Expression, And Crystallization Of Recombin 2e-09
1qmo_E133 Structure Of Fril, A Legume Lectin That Delays Hema 2e-09
1rin_A180 X-Ray Crystal Structure Of A Pea Lectin-Trimannosid 2e-09
1n47_A233 Isolectin B4 From Vicia Villosa In Complex With The 2e-09
1loa_A181 Three-Dimensional Structures Of Complexes Of Lathyr 2e-09
2eig_A234 Lotus Tetragonolobus Seed Lectin (Isoform) Length = 2e-09
1cn1_A 237 Crystal Structure Of Demetallized Concanavalin A. T 3e-09
2cna_A 237 The Covalent And Three-Dimensional Structure Of Con 3e-09
1fx5_A242 Crystal Structure Analysis Of Ulex Europaeus Lectin 6e-09
2b7y_A182 Fava Bean Lectin-Glucose Complex Length = 182 1e-08
2lal_A181 Crystal Structure Determination And Refinement At 2 1e-08
1ioa_A240 Arcelin-5, A Lectin-Like Defense Protein From Phase 1e-07
1avb_A226 Arcelin-1 From Phaseolus Vulgaris L Length = 226 3e-07
>pdb|3USU|A Chain A, Crystal Structure Of Butea Monosperma Seed Lectin Length = 256 Back     alignment and structure 
Iteration: 1

 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 97/221 (43%), Gaps = 21/221 (9%)
Query: 46  AVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWP------AMISTTFTIRISP 99
           A   S G L LT       PD    K +GR LY+ P+  W       A  +T+F   I  
Sbjct: 25  ATVTSSGTLQLTKVDKNGVPDP---KSLGRALYASPINIWDSKTGVVASFATSFRFTIYA 81
Query: 100 YPNTTDSADGMTFVFATDTSPPTEXXXXX----XXXXXXXXXXXAVELDTYKNDYWSDPD 155
            PN    ADG+ F  A  +SPP                      AVE DTY+N  + DP 
Sbjct: 82  -PNIATIADGLAFFLAPVSSPPKAGAGFLGLFDSAVFNSSYQTVAVEFDTYENTVFLDPP 140
Query: 156 ANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLI 215
             H+GID+     N  KS+ +   DL +G   +V I YD   K+L   + Y  +    ++
Sbjct: 141 DTHIGIDV-----NSIKSIKTVKWDLANGEAAKVLITYDSSAKLLVAALVYPSSKTSFIL 195
Query: 216 ERPIPLSETIPSSVYVGFTASTGPD--FSESHQVLDWTFTT 254
              + L   +P  V +GF+A+TG    + E+H V  W+F +
Sbjct: 196 SDVVDLKSVLPEWVSIGFSAATGASSGYIETHDVFSWSFAS 236
>pdb|3USU|B Chain B, Crystal Structure Of Butea Monosperma Seed Lectin Length = 242 Back     alignment and structure
>pdb|2BQP|A Chain A, The Structure Of The Pea Lectin-D-Glucopyranose Complex Length = 234 Back     alignment and structure
>pdb|3UJO|A Chain A, Galactose-Specific Seed Lectin From Dolichos Lablab In Complex With Adenine And Galactose Length = 281 Back     alignment and structure
>pdb|1LUL|A Chain A, Db58, A Legume Lectin From Dolichos Biflorus Length = 253 Back     alignment and structure
>pdb|1BJQ|A Chain A, The Dolichos Biflorus Seed Lectin In Complex With Adenine Length = 253 Back     alignment and structure
>pdb|2SBA|A Chain A, Soybean Agglutinin Complexed With 2,6-Pentasaccharide Length = 253 Back     alignment and structure
>pdb|1FAT|A Chain A, Phytohemagglutinin-L Length = 252 Back     alignment and structure
>pdb|3IPV|B Chain B, Crystal Structure Of Spatholobus Parviflorus Seed Lectin Length = 239 Back     alignment and structure
>pdb|1G8W|A Chain A, Improved Structure Of Phytohemagglutinin-L From The Kidney Bean Length = 233 Back     alignment and structure
>pdb|3IPV|A Chain A, Crystal Structure Of Spatholobus Parviflorus Seed Lectin Length = 251 Back     alignment and structure
>pdb|2FMD|A Chain A, Structural Basis Of Carbohydrate Recognition By Bowringia Milbraedii Seed Agglutinin Length = 240 Back     alignment and structure
>pdb|1FAY|A Chain A, Winged Bean Acidic Lectin Complexed With Methyl-Alpha-D-Galactose (Monoclinic Form) Length = 238 Back     alignment and structure
>pdb|1WBF|A Chain A, Winged Bean Lectin, Saccharide Free Form Length = 242 Back     alignment and structure
>pdb|2E7Q|A Chain A, Crystal Structure Of Basic Winged Bean Lectin In Complex With B Blood Group Trisaccharide Length = 237 Back     alignment and structure
>pdb|1WBL|A Chain A, Winged Bean Lectin Complexed With Methyl-Alpha-D-Galactose Length = 241 Back     alignment and structure
>pdb|1GZ9|A Chain A, High-Resolution Crystal Structure Of Erythrina Cristagalli Lectin In Complex With 2'-Alpha-L-Fucosyllactose Length = 239 Back     alignment and structure
>pdb|1QNW|A Chain A, Lectin Ii From Ulex Europaeus Length = 242 Back     alignment and structure
>pdb|1HQL|A Chain A, The Xenograft Antigen In Complex With The B4 Isolectin Of Griffonia Simplicifolia Lectin-1 Length = 257 Back     alignment and structure
>pdb|1GNZ|A Chain A, Lectin I-B4 From Griffonia Simplicifolia (Gs I-B4)metal Free Form Length = 257 Back     alignment and structure
>pdb|1FNY|A Chain A, Legume Lectin Of The Bark Of Robinia Pseudoacacia. Length = 237 Back     alignment and structure
>pdb|2PEL|A Chain A, Peanut Lectin Length = 236 Back     alignment and structure
>pdb|1BZW|A Chain A, Peanut Lectin Complexed With C-Lactose Length = 232 Back     alignment and structure
>pdb|3N35|A Chain A, Erythrina Corallodendron Lectin Mutant (Y106g) With N- Acetylgalactosamine Length = 242 Back     alignment and structure
>pdb|1FYU|A Chain A, Crystal Structure Of Erythrina Corallodendron Lectin In Hexagonal Crystal Form Length = 255 Back     alignment and structure
>pdb|1SFY|A Chain A, Crystal Structure Of Recombinant Erythrina Corallodandron Lectin Length = 239 Back     alignment and structure
>pdb|1UZY|A Chain A, Erythrina Crystagalli Lectin Length = 242 Back     alignment and structure
>pdb|1AX0|A Chain A, Erythrina Corallodendron Lectin In Complex With N-Actylgalactosamine Length = 239 Back     alignment and structure
>pdb|1DBN|A Chain A, Maackia Amurensis Leukoagglutinin (Lectin) With Sialyllactose Length = 239 Back     alignment and structure
>pdb|1LTE|A Chain A, Structure Of A Legume Lectin With An Ordered N-Linked Carbohydrate In Complex With Lactose Length = 239 Back     alignment and structure
>pdb|2JE9|A Chain A, Crystal Structure Of Recombinant Dioclea Grandiflora Lectin Complexed With 5-Bromo-4-Chloro-3-Indolyl-A-D-Mannose Length = 239 Back     alignment and structure
>pdb|3SH3|A Chain A, Crystal Structure Of A Pro-Inflammatory Lectin From The Seeds Of Dioclea Wilsonii Standl Length = 237 Back     alignment and structure
>pdb|2GDF|A Chain A, Crystal Structure Of Dioclea Violacea Seed Lectin Length = 237 Back     alignment and structure
>pdb|1GSL|A Chain A, Lectin (Fourth Isolated From (Griffonia Simplicifolia)) Complex With Y Human Blood Group Determinant Length = 243 Back     alignment and structure
>pdb|2JEC|A Chain A, Crystal Structure Of Recombinant Dioclea Grandiflora Lectin Mutant E123a-H131n-K132q Complexed With 5-Bromo-4-Chloro-3- Indolyl-A-D-Mannose Length = 239 Back     alignment and structure
>pdb|2OVU|A Chain A, Crystal Strucure Of A Lectin From Canavalia Gladiata (Cgl) In Complex With Man1-2man-Ome Length = 237 Back     alignment and structure
>pdb|2ZBJ|A Chain A, Crystal Structure Of Dioclea Rostrata Lectin Length = 237 Back     alignment and structure
>pdb|3ZVX|A Chain A, Structure Of The Lectin From Platypodium Elegans In Complex With A Trimannoside Length = 261 Back     alignment and structure
>pdb|1MVQ|A Chain A, Cratylia Mollis Lectin (Isoform 1) In Complex With Methyl-Alpha-D- Mannose Length = 236 Back     alignment and structure
>pdb|1WUV|A Chain A, Crystal Structure Of Native Canavalia Gladiata Lectin (Cgl): A Tetrameric Cona-Like Lectin Length = 237 Back     alignment and structure
>pdb|1DGL|A Chain A, Lectin From Dioclea Grandiflora Complexed To Trimannoside Length = 237 Back     alignment and structure
>pdb|3U4X|A Chain A, Crystal Structure Of A Lectin From Camptosema Pedicellatum Seeds In Complex With 5-Bromo-4-Chloro-3-Indolyl-Alpha-D-Mannose Length = 236 Back     alignment and structure
>pdb|1LGC|A Chain A, Interaction Of A Legume Lectin With The N2 Fragment Of Human Lactotransferrin Or With The Isolated Biantennary Glycopeptide: Role Of The Fucose Moiety Length = 181 Back     alignment and structure
>pdb|3A0K|A Chain A, Crystal Structure Of An Antiflamatory Legume Lectin From Cymbosema Roseum Seeds Length = 237 Back     alignment and structure
>pdb|2CTV|A Chain A, High Resolution Crystallographic Studies Of Native Concanavalin A Using Rapid Laue Data Collection Methods And The Introduction Of A Monochromatic Large-Angle Oscillation Technique (Lot) Length = 237 Back     alignment and structure
>pdb|2YZ4|A Chain A, The Neutron Structure Of Concanavalin A At 2.2 Angstroms Length = 237 Back     alignment and structure
>pdb|2D3P|A Chain A, Cratylia Floribunda Seed Lectin Crystallized At Basic Ph Length = 236 Back     alignment and structure
>pdb|1AZD|A Chain A, Concanavalin From Canavalia Brasiliensis Length = 237 Back     alignment and structure
>pdb|2JDZ|A Chain A, Crystal Structure Of Recombinant Dioclea Guianensis Lectin Complexed With 5-Bromo-4-Chloro-3-Indolyl-A-D-Mannose Length = 239 Back     alignment and structure
>pdb|2OW4|A Chain A, Crystal Structure Of A Lectin From Canavalia Maritima Seeds (Conm) In Complex With Man1-2man-Ome Length = 237 Back     alignment and structure
>pdb|2JE7|A Chain A, Crystal Structure Of Recombinant Dioclea Guianensis Lectin S131h Complexed With 5-Bromo-4-Chloro-3-Indolyl-A-D-Mannose Length = 239 Back     alignment and structure
>pdb|2CWM|A Chain A, Native Crystal Structure Of No Releasing Inductive Lectin From Seeds Of The Canavalia Maritima (Conm) Length = 237 Back     alignment and structure
>pdb|1LGB|A Chain A, Interaction Of A Legume Lectin With The N2 Fragment Of Human Lactotransferrin Or With The Isolated Biantennary Glycopeptide: Role Of The Fucose Moiety Length = 181 Back     alignment and structure
>pdb|1H9P|A Chain A, Crystal Structure Of Dioclea Guianensis Seed Lectin Length = 237 Back     alignment and structure
>pdb|1H9W|A Chain A, Native Dioclea Guianensis Seed Lectin Length = 237 Back     alignment and structure
>pdb|3RRD|A Chain A, Native Structure Of Dioclea Virgata Lectin Length = 237 Back     alignment and structure
>pdb|1Q8O|A Chain A, Pterocartpus Angolensis Lectin Pal In Complex With The Dimmanoside Man(Alpha1-2)man Length = 252 Back     alignment and structure
>pdb|1N3O|A Chain A, Pterocarcpus Angolensis Lectin In Complex With Alpha-Methyl Glucose Length = 252 Back     alignment and structure
>pdb|1OFS|A Chain A, Pea Lectin-sucrose Complex Length = 187 Back     alignment and structure
>pdb|1LOF|C Chain C, X-Ray Structure Of A Biantennary Octasaccharide-Lectin Complex At 2.3 Angstroms Resolution Length = 181 Back     alignment and structure
>pdb|2LTN|A Chain A, Design, Expression, And Crystallization Of Recombinant Lectin From The Garden Pea (Pisum Sativum) Length = 181 Back     alignment and structure
>pdb|1QMO|E Chain E, Structure Of Fril, A Legume Lectin That Delays Hematopoietic Progenitor Maturation Length = 133 Back     alignment and structure
>pdb|1RIN|A Chain A, X-Ray Crystal Structure Of A Pea Lectin-Trimannoside Complex At 2.6 Angstroms Resolution Length = 180 Back     alignment and structure
>pdb|1N47|A Chain A, Isolectin B4 From Vicia Villosa In Complex With The Tn Antigen Length = 233 Back     alignment and structure
>pdb|1LOA|A Chain A, Three-Dimensional Structures Of Complexes Of Lathyrus Ochrus Isolectin I With Glucose And Mannose: Fine Specificity Of The Monosaccharide-Binding Site Length = 181 Back     alignment and structure
>pdb|2EIG|A Chain A, Lotus Tetragonolobus Seed Lectin (Isoform) Length = 234 Back     alignment and structure
>pdb|1CN1|A Chain A, Crystal Structure Of Demetallized Concanavalin A. The Metal- Binding Region Length = 237 Back     alignment and structure
>pdb|2CNA|A Chain A, The Covalent And Three-Dimensional Structure Of Concanavalin A, Iv.Atomic Coordinates,Hydrogen Bonding,And Quaternary Structure Length = 237 Back     alignment and structure
>pdb|1FX5|A Chain A, Crystal Structure Analysis Of Ulex Europaeus Lectin I Length = 242 Back     alignment and structure
>pdb|2B7Y|A Chain A, Fava Bean Lectin-Glucose Complex Length = 182 Back     alignment and structure
>pdb|2LAL|A Chain A, Crystal Structure Determination And Refinement At 2.3 Angstroms Resolution Of The Lentil Lectin Length = 181 Back     alignment and structure
>pdb|1IOA|A Chain A, Arcelin-5, A Lectin-Like Defense Protein From Phaseolus Vulgaris Length = 240 Back     alignment and structure
>pdb|1AVB|A Chain A, Arcelin-1 From Phaseolus Vulgaris L Length = 226 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query271
1v6i_A232 Agglutinin, PNA, galactose-binding lectin; open qu 5e-44
1fx5_A242 UEA-I, UE-I, anti-H(O) lectin I; legume lectin, HO 2e-43
3ipv_A251 Lectin alpha chain; galactose binding, SEED lectin 2e-43
1g7y_A253 Stem/LEAF lectin DB58; jelly roll fold, sugar bind 3e-42
1gsl_A243 Griffonia simplicifolia lectin 4; glycoprotein, ma 3e-42
1gzc_A239 Erythrina crista-galli lectin; carbohydrate, sugar 4e-42
1hql_A257 Lectin; xenograft antigen, sugar BI protein; HET: 5e-42
2eig_A234 Lectin; L-fucosyl, N-acetyl-D-glucosamine, SUG bin 1e-41
1n47_A233 Isolectin B4; cancer antigen, vicia villosa lectin 2e-41
1wbf_A242 Protein (agglutinin); lectin (agglutinin), legume 3e-41
3zyr_A261 Lectin; sugar binding protein, N-glycan; HET: NAG 4e-41
1fat_A252 Phytohemagglutinin-L; glycoprotein, plant defense 4e-41
1dbn_A239 MAL, protein (leukoagglutinin); plant lectin, carb 6e-41
1sbf_A253 Soybean agglutinin; lectin; HET: NAG GAL; 2.43A {G 5e-40
1fny_A237 BARK lectin, BARK agglutinin I,polypeptide A; legu 4e-39
2fmd_A240 Lectin, agglutinin, BMA; legume lectin, beta sandw 1e-38
1f9k_A238 Acidic lectin; legume lectin, glycosylated protein 5e-38
1qnw_A242 Chitin binding lectin, UEA-II; carbohydrate bindin 2e-37
1ioa_A240 Arcelin-5A, ARC5A; lectin-like proteins, plant def 2e-37
2bqp_A234 Protein (PEA lectin); D-glucopyranose complex, sug 3e-36
1avb_A226 Arcelin-1; lectin-like glycoprotein, plant defense 2e-35
1dhk_B223 Bean lectin-like inhibitor, porcine pancreatic alp 1e-31
1qmo_E133 Mannose binding lectin, FRIL; crosslink, hematopoi 1e-27
2ltn_A181 PEA lectin, alpha chain; 1.70A {Pisum sativum} SCO 7e-27
1nls_A 237 Concanavalin A; lectin, agglutinin; 0.94A {Canaval 8e-24
1nls_A237 Concanavalin A; lectin, agglutinin; 0.94A {Canaval 7e-09
1qmo_A113 Mannose binding lectin, FRIL; crosslink, hematopoi 3e-16
1gv9_A260 P58/ergic-53; lectin, carbohydrate binding; 1.46A 3e-15
2dur_A253 VIP36;, vesicular integral-membrane protein VIP36; 4e-15
2a6v_A226 EMP46P; beta sandwich, carbohydrate binding protei 9e-06
2ltn_B52 PEA lectin, beta chain; 1.70A {Pisum sativum} SCOP 2e-05
2a6y_A256 EMP47P (FORM1); beta sandwich, carbohydrate bindin 6e-05
2a6z_A222 EMP47P (FORM2); beta sandwich, carbohydrate bindin 8e-04
>1v6i_A Agglutinin, PNA, galactose-binding lectin; open quaternary association, orthorhombic, carbohydrate specificity, protein crystallography; HET: GAL GLC; 2.15A {Arachis hypogaea} SCOP: b.29.1.1 PDB: 1bzw_A* 1v6j_A* 1v6k_A* 1v6l_A* 1v6m_A 1v6n_A 1v6o_A 2dva_A* 1cq9_A 1ciw_A* 1qf3_A* 1rir_A* 1rit_A* 2dh1_A 1cr7_A* 2dv9_A* 2dvb_A* 2dvd_A* 2dvf_A 2dvg_A* ... Length = 232 Back     alignment and structure
 Score =  148 bits (374), Expect = 5e-44
 Identities = 69/243 (28%), Positives = 105/243 (43%), Gaps = 29/243 (11%)

Query: 23  PVSFSFSSFNPKSCSDGSLICMG-AVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQP 81
            VSF+F+SF+     + ++   G     S G + LT+     S        VGRVLY+ P
Sbjct: 3   TVSFNFNSFSE---GNPAINFQGDVTVLSNGNIQLTNLNKVNS--------VGRVLYAMP 51

Query: 82  VTAW------PAMISTTFTIRISPYPNTTDSADGMTFVFATDTSPPTENSAGGNLGLSNG 135
           V  W       A   T+F+  +       D ADG+ F  A + +     S GG     + 
Sbjct: 52  VRIWSSATGNVASFLTSFSFEMKD-IKDYDPADGIIFFIAPEDTQIPAGSIGGGTLGVSD 110

Query: 136 VS----QLAVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHI 191
                  + VE DTY N  ++DP  +H+GID+ ++ S      +       SG  ++V +
Sbjct: 111 TKGAGHFVGVEFDTYSNSEYNDPPTDHVGIDVNSVDSVKTVPWN-----SVSGAVVKVTV 165

Query: 192 YYDGWTKILYVYVAYAGNPLQKLIERPIPLSETIPSSVYVGFTASTGPDFSESHQVLDWT 251
            YD  TK L V V    N     I + + L   +P  V  GF+AS      + H +  W+
Sbjct: 166 IYDSSTKTLSVAVTND-NGDITTIAQVVDLKAKLPERVKFGFSASGSLGGRQIHLIRSWS 224

Query: 252 FTT 254
           FT+
Sbjct: 225 FTS 227
>1fx5_A UEA-I, UE-I, anti-H(O) lectin I; legume lectin, HOMO-dimer, fucose specific lectin, SUG binding protein; HET: NAG FUC BMA MAN; 2.20A {Ulex europaeus} SCOP: b.29.1.1 PDB: 1jxn_A* Length = 242 Back     alignment and structure
>3ipv_A Lectin alpha chain; galactose binding, SEED lectin, hemagglutinin, legume lectin fungal, sugar binding protein; 2.04A {Spatholobus parviflorus} PDB: 3ipv_B 3usu_B* 3usu_A* Length = 251 Back     alignment and structure
>1g7y_A Stem/LEAF lectin DB58; jelly roll fold, sugar binding protein; HET: NAG FUC FUL; 2.50A {Vigna unguiculata subsp} SCOP: b.29.1.1 PDB: 1lul_A 1lu1_A* 1bjq_A* 1lu2_A* Length = 253 Back     alignment and structure
>1gsl_A Griffonia simplicifolia lectin 4; glycoprotein, manganese; HET: FUC GAL MAG NAG BMA; 2.00A {Griffonia simplicifolia} SCOP: b.29.1.1 PDB: 1lec_A* 1led_A* Length = 243 Back     alignment and structure
>1gzc_A Erythrina crista-galli lectin; carbohydrate, sugar binding protein, saccharide, protein-carbohydrate interactions, lactose, glycoprotein; HET: LAT; 1.58A {Erythrina crista-galli} SCOP: b.29.1.1 PDB: 1gz9_A* 1fyu_A* 1ax0_A* 1ax1_A* 1ax2_A* 1axy_A* 1axz_A* 1lte_A* 1sfy_A* 1v00_A* 1uzz_A 1uzy_A* 3n35_A* 3n36_A* 3n3h_A* Length = 239 Back     alignment and structure
>1hql_A Lectin; xenograft antigen, sugar BI protein; HET: GLA MBG NAG; 2.20A {Griffonia simplicifolia} SCOP: b.29.1.1 PDB: 1gnz_A* Length = 257 Back     alignment and structure
>2eig_A Lectin; L-fucosyl, N-acetyl-D-glucosamine, SUG binding protein; HET: NAG; 2.00A {Lotus tetragonolobus} Length = 234 Back     alignment and structure
>1n47_A Isolectin B4; cancer antigen, vicia villosa lectin, glycoprotein TN-bindin protein, carbohydrate recognition, sugar binding protein; HET: NAG FUC TNR; 2.70A {Vicia villosa} SCOP: b.29.1.1 Length = 233 Back     alignment and structure
>1wbf_A Protein (agglutinin); lectin (agglutinin), legume lectin, protein crystallography, group specificity, saccharide free form; HET: NAG; 2.30A {Psophocarpus tetragonolobus} SCOP: b.29.1.1 PDB: 2d3s_A* 2dtw_A* 1wbl_A* 2dty_A* 2du0_A* 2du1_A* 2e51_A* 2e53_A* 2zmk_A* 2zml_A* 2zmn_A* 2e7t_A* 2e7q_A* Length = 242 Back     alignment and structure
>3zyr_A Lectin; sugar binding protein, N-glycan; HET: NAG BMA MAN GOL; 1.65A {Platypodium elegans} PDB: 3zvx_A* 1ukg_A* 1q8o_A* 1q8q_A* 1q8s_A* 1q8v_A* 1q8p_A* 2auy_A* 2gme_A 2gmm_A* 2gmp_A* 2gn3_A* 2gn7_A* 2gnb_A* 2gnd_A* 2gnm_A* 2gnt_A 2phf_A* 2phr_A* 2pht_A* ... Length = 261 Back     alignment and structure
>1fat_A Phytohemagglutinin-L; glycoprotein, plant defense protein, lectin; HET: NAG; 2.80A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB: 1g8w_A* Length = 252 Back     alignment and structure
>1dbn_A MAL, protein (leukoagglutinin); plant lectin, carbohydrate binding, sialyllactose, sugar BIN protein; HET: NAG SIA GAL BGC; 2.75A {Maackia amurensis} SCOP: b.29.1.1 Length = 239 Back     alignment and structure
>1sbf_A Soybean agglutinin; lectin; HET: NAG GAL; 2.43A {Glycine max} SCOP: b.29.1.1 PDB: 1sbd_A* 1sbe_A* 1g9f_A* 2sba_A* Length = 253 Back     alignment and structure
>1fny_A BARK lectin, BARK agglutinin I,polypeptide A; legume lectin, jelly roll, sugar binding protein; 1.81A {Robinia pseudoacacia} SCOP: b.29.1.1 PDB: 1fnz_A* Length = 237 Back     alignment and structure
>2fmd_A Lectin, agglutinin, BMA; legume lectin, beta sandwich, protein-carbohydrate complex, sugar binding protein; HET: MAN; 1.90A {Bowringia mildbraedii} Length = 240 Back     alignment and structure
>1f9k_A Acidic lectin; legume lectin, glycosylated protein, H-antigenic specificity agglutinin, sugar binding protein; HET: NAG MAN AMG; 3.00A {Psophocarpus tetragonolobus} SCOP: b.29.1.1 PDB: 1fay_A* Length = 238 Back     alignment and structure
>1qnw_A Chitin binding lectin, UEA-II; carbohydrate binding; HET: NAG; 2.35A {Ulex europaeus} SCOP: b.29.1.1 PDB: 1dzq_A* 1qoo_A* 1qos_A* 1qot_A* Length = 242 Back     alignment and structure
>1ioa_A Arcelin-5A, ARC5A; lectin-like proteins, plant defense proteins, lectin; HET: NAG FUC; 2.70A {Phaseolus vulgaris} SCOP: b.29.1.1 Length = 240 Back     alignment and structure
>2bqp_A Protein (PEA lectin); D-glucopyranose complex, sugar binding protein; HET: GLC; 1.90A {Pisum sativum} SCOP: b.29.1.1 Length = 234 Back     alignment and structure
>1avb_A Arcelin-1; lectin-like glycoprotein, plant defense, insecticidal activi lectin; HET: NAG; 1.90A {Phaseolus vulgaris} SCOP: b.29.1.1 Length = 226 Back     alignment and structure
>1dhk_B Bean lectin-like inhibitor, porcine pancreatic alpha-amylase; CO (hydrolase-inhibitor), complex (hydrolase-inhibitor) comple; HET: NAG; 1.85A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB: 1viw_B* Length = 223 Back     alignment and structure
>1qmo_E Mannose binding lectin, FRIL; crosslink, hematopoietic progenitor, sugar complex; HET: MAN; 3.5A {Dolichos lab lab} SCOP: b.29.1.1 Length = 133 Back     alignment and structure
>2ltn_A PEA lectin, alpha chain; 1.70A {Pisum sativum} SCOP: b.29.1.1 PDB: 1bqp_A* 1hkd_A 1ofs_A* 1rin_A* 1lof_C* 1len_A 1lem_A 1les_A* 2lal_A 1loe_A 1loa_A* 1loc_A* 1lod_A* 1lob_A 1lof_A* 1log_A* 1lgc_A* 1lgb_A* 2b7y_A* Length = 181 Back     alignment and structure
>1nls_A Concanavalin A; lectin, agglutinin; 0.94A {Canavalia ensiformis} SCOP: b.29.1.1 PDB: 1bxh_A* 1apn_A 1ces_A 1cjp_A* 1c57_A 1cvn_A* 1con_A 1dq1_A 1dq2_A 1dq4_A 1dq5_A 1dq6_A 1enq_A 1enr_A 1ens_A 1gic_A* 1dq0_A 1hqw_A 1gkb_A* 1i3h_A ... Length = 237 Back     alignment and structure
>1nls_A Concanavalin A; lectin, agglutinin; 0.94A {Canavalia ensiformis} SCOP: b.29.1.1 PDB: 1bxh_A* 1apn_A 1ces_A 1cjp_A* 1c57_A 1cvn_A* 1con_A 1dq1_A 1dq2_A 1dq4_A 1dq5_A 1dq6_A 1enq_A 1enr_A 1ens_A 1gic_A* 1dq0_A 1hqw_A 1gkb_A* 1i3h_A ... Length = 237 Back     alignment and structure
>1qmo_A Mannose binding lectin, FRIL; crosslink, hematopoietic progenitor, sugar complex; HET: MAN; 3.5A {Dolichos lab lab} SCOP: b.29.1.1 Length = 113 Back     alignment and structure
>1gv9_A P58/ergic-53; lectin, carbohydrate binding; 1.46A {Rattus norvegicus} SCOP: b.29.1.13 PDB: 1r1z_A 3a4u_A 3lcp_A Length = 260 Back     alignment and structure
>2dur_A VIP36;, vesicular integral-membrane protein VIP36; beta sandwich, carbohydrate binding protein, cargo receptor, transport; HET: MAN; 1.65A {Canis lupus familiaris} PDB: 2dup_A 2duq_A* 2duo_A* 2e6v_A* Length = 253 Back     alignment and structure
>2a6v_A EMP46P; beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.52A {Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a6w_A 2a6x_A Length = 226 Back     alignment and structure
>2ltn_B PEA lectin, beta chain; 1.70A {Pisum sativum} SCOP: b.29.1.1 PDB: 1hkd_B 1rin_B* 1ofs_B* 1bqp_B* 1loe_B 1loa_B* 1loc_B* 1lod_B* 1lob_B 1lof_B* 1log_B* 1lof_D* 1les_B* 2b7y_B* 1lgc_B* 1lgb_B* 1len_B 1lem_B 2lal_B Length = 52 Back     alignment and structure
>2a6y_A EMP47P (FORM1); beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.42A {Saccharomyces cerevisiae} SCOP: b.29.1.13 Length = 256 Back     alignment and structure
>2a6z_A EMP47P (FORM2); beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.00A {Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a70_A 2a71_A Length = 222 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query271
3ujo_A281 Legume lectin; carbohydrate-binding, galactose, ad 100.0
3zyr_A261 Lectin; sugar binding protein, N-glycan; HET: NAG 100.0
3ipv_A251 Lectin alpha chain; galactose binding, SEED lectin 100.0
1dbn_A239 MAL, protein (leukoagglutinin); plant lectin, carb 100.0
1v6i_A232 Agglutinin, PNA, galactose-binding lectin; open qu 100.0
2eig_A234 Lectin; L-fucosyl, N-acetyl-D-glucosamine, SUG bin 100.0
1fny_A237 BARK lectin, BARK agglutinin I,polypeptide A; legu 100.0
1qnw_A242 Chitin binding lectin, UEA-II; carbohydrate bindin 100.0
1gzc_A239 Erythrina crista-galli lectin; carbohydrate, sugar 100.0
1g7y_A253 Stem/LEAF lectin DB58; jelly roll fold, sugar bind 100.0
2bqp_A234 Protein (PEA lectin); D-glucopyranose complex, sug 100.0
1sbf_A253 Soybean agglutinin; lectin; HET: NAG GAL; 2.43A {G 100.0
1n47_A233 Isolectin B4; cancer antigen, vicia villosa lectin 100.0
1hql_A257 Lectin; xenograft antigen, sugar BI protein; HET: 100.0
1fat_A252 Phytohemagglutinin-L; glycoprotein, plant defense 100.0
1fx5_A242 UEA-I, UE-I, anti-H(O) lectin I; legume lectin, HO 100.0
2fmd_A240 Lectin, agglutinin, BMA; legume lectin, beta sandw 100.0
1f9k_A238 Acidic lectin; legume lectin, glycosylated protein 100.0
1wbf_A242 Protein (agglutinin); lectin (agglutinin), legume 100.0
1gsl_A243 Griffonia simplicifolia lectin 4; glycoprotein, ma 100.0
1avb_A226 Arcelin-1; lectin-like glycoprotein, plant defense 100.0
1ioa_A240 Arcelin-5A, ARC5A; lectin-like proteins, plant def 100.0
1dhk_B223 Bean lectin-like inhibitor, porcine pancreatic alp 100.0
2ltn_A181 PEA lectin, alpha chain; 1.70A {Pisum sativum} SCO 100.0
2dur_A253 VIP36;, vesicular integral-membrane protein VIP36; 100.0
1gv9_A260 P58/ergic-53; lectin, carbohydrate binding; 1.46A 100.0
1qmo_E133 Mannose binding lectin, FRIL; crosslink, hematopoi 100.0
1nls_A 237 Concanavalin A; lectin, agglutinin; 0.94A {Canaval 100.0
2a6y_A256 EMP47P (FORM1); beta sandwich, carbohydrate bindin 99.98
2a6z_A222 EMP47P (FORM2); beta sandwich, carbohydrate bindin 99.95
1qmo_A113 Mannose binding lectin, FRIL; crosslink, hematopoi 99.9
2a6v_A226 EMP46P; beta sandwich, carbohydrate binding protei 99.9
1nls_A237 Concanavalin A; lectin, agglutinin; 0.94A {Canaval 99.85
2ltn_B52 PEA lectin, beta chain; 1.70A {Pisum sativum} SCOP 99.47
>3ujo_A Legume lectin; carbohydrate-binding, galactose, adenine binding protein; HET: ADE GAL; 2.00A {Dolichos lablab} PDB: 3ujq_A* 3uk9_A* 3ul2_A* 1fat_A* 1g8w_A* Back     alignment and structure
Probab=100.00  E-value=2.5e-61  Score=435.29  Aligned_cols=241  Identities=32%  Similarity=0.525  Sum_probs=198.1

Q ss_pred             ChhhHHHHhhccCCCCCCCCCCCeeEEeCCCCCCCCCCCCeEEecceEEeCCeEEecCCCCCCCCCCCCCCcEEEEEecC
Q 024176            1 MIFLLLLSIFLPSASSSIPVDPPVSFSFSSFNPKSCSDGSLICMGAVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQ   80 (271)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~F~f~~F~~~~~~~~~l~l~G~A~~~~g~l~LT~~~~~~~~~~~~~~~~G~~~y~~   80 (271)
                      ||.+.++|+|+..+.+.    ..++|+|++|..     .+|+|+|+|.+.+|.||||++....   ....+++|||+|++
T Consensus         8 ~~~~~~fl~l~~~~~sa----~~~sF~f~~F~~-----~nL~l~GdA~i~~g~L~LT~~~~~~---~p~~~s~Gra~Y~~   75 (281)
T 3ujo_A            8 MKRIVLFLILLTKAASA----NLISFTFKKFNE-----TNLILQRDATVSSGKLRITKAAENG---VPTAGSLGRAFYST   75 (281)
T ss_dssp             ----------------C----EEEEEEESSCCS-----TTEEECSSCCCBTTBEECSCCCSSC---CCCSSCEEEEEESS
T ss_pred             HHHHHHHHHHHcccCcC----CcceEEcCCCCc-----cCEEEecceEEeCCEEEeCCCCCCC---cccCCceEEEEECC
Confidence            45555666666655532    389999999985     5799999999999999999986310   11235899999999


Q ss_pred             ceeecC------CCeeEEEEEEEecCCCCCCCCCceEEEEecCCCCCCCCCCCCCCCCCC------CCceEEEEEeccCC
Q 024176           81 PVTAWP------AMISTTFTIRISPYPNTTDSADGMTFVFATDTSPPTENSAGGNLGLSN------GVSQLAVELDTYKN  148 (271)
Q Consensus        81 Pi~l~~------~sFst~F~F~I~~~~~~~~~gdGlAF~l~~~~~~~~~g~~G~~lGl~~------~~~~vAVEFDT~~N  148 (271)
                      ||++||      +||+|+|+|.|..+ +...+||||||+|+|.+.. | ++.|++||+.+      .++.|||||||++|
T Consensus        76 Pi~l~d~~tg~vaSFsTsFsF~I~~~-~~~~~gdGlAF~laP~~~~-p-~~~gg~LGL~n~~~~~~~n~~vAVEFDT~~N  152 (281)
T 3ujo_A           76 PIQIWDNTTGTVASWATSFTFNLQAP-NAASPADGLAFALVPVGSQ-P-KDKGGFLGLFDSKNYASSNQTVAVEFDTFYN  152 (281)
T ss_dssp             CEECBCSSSCCBEEEEEEEEEECCCS-STTSCCEEEEEEEEETTCC-C-CCCGGGTTTCSCSSCCTTSCCEEEEECCSCC
T ss_pred             CEEcccCCCCCceeEEEEEEEEEecC-CCCCCCCceEEEEecCCCC-C-CCCcceeeeccccCCCccCcEEEEEEecccc
Confidence            999998      68999999999986 5677999999999998733 3 57899999995      46899999999999


Q ss_pred             CCCCCCCCCceEEecCCCCccccccCCCCCCcCCCCCcEEEEEEEeCcceEEEEEEEeCCCCCceEEEEeecCCCCCCCc
Q 024176          149 DYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPIPLSETIPSS  228 (271)
Q Consensus       149 ~~~~Dp~~nHvgi~~ns~~s~~~~~~~~~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~~~p~~~~ls~~vdL~~~l~~~  228 (271)
                      .+| ||++||||||+|++.|.++.+|     .+.+|+.++|||+||+.+++|+|+|.+...+++|+++..+||+++|+++
T Consensus       153 ~e~-Dp~~nHVGIDvNSi~S~~t~~~-----~l~~G~~~~vwI~Yd~~tk~L~V~l~~~~~~~~~~lS~~vDL~~~L~e~  226 (281)
T 3ujo_A          153 GGW-DPTERHIGIDVNSIKSIKTTSW-----DFANGENAEVLITYDSSTNLLVASLVHPSQKTSFIVSERVDLTSVLPEW  226 (281)
T ss_dssp             CSS-CCSSSEEEEEESSSCCSCEEEC-----CCCSSCCEEEEEEECTTTCEEEEEEECTTTCCCEEEEEECCSTTTSCSE
T ss_pred             ccC-CCCCCeEEEEcCCCCccccccc-----cccCCCEEEEEEEEeCCCCEEEEEEecCCCCCCceEEEEechHHhccCc
Confidence            999 9999999999999999998887     3679999999999999999999999997767789999999999999999


Q ss_pred             eEEEEEeecCCC---CccceEEEEEEEEecCCCCCccc
Q 024176          229 VYVGFTASTGPD---FSESHQVLDWTFTTFPLPSSSLE  263 (271)
Q Consensus       229 ~yvGFSASTG~~---~~~~h~I~sWsf~~~~~~~~~~~  263 (271)
                      |||||||||| .   ..|.|+|++|+|++++......+
T Consensus       227 v~VGFSAsTG-~~~~~~e~H~IlsWSFss~l~~~~~~~  263 (281)
T 3ujo_A          227 VSVGFSATTG-LSKGYVETNEVLSWSFASKLSINKEDE  263 (281)
T ss_dssp             EEEEEEEEEC-SSTTSCCCCEEEEEEEEEEECSSSCCC
T ss_pred             EEEEEEeecC-CCCcccceeEEEEEEEEEEcCCCCccc
Confidence            9999999999 6   58999999999999988655443
>3zyr_A Lectin; sugar binding protein, N-glycan; HET: NAG BMA MAN GOL; 1.65A {Platypodium elegans} SCOP: b.29.1.1 PDB: 3zvx_A* 1ukg_A* 1q8o_A* 1q8q_A* 1q8s_A* 1q8v_A* 1q8p_A* 2auy_A* 2gme_A 2gmm_A* 2gmp_A* 2gn3_A* 2gn7_A* 2gnb_A* 2gnd_A* 2gnm_A* 2gnt_A 2phf_A* 2phr_A* 2pht_A* ... Back     alignment and structure
>3ipv_A Lectin alpha chain; galactose binding, SEED lectin, hemagglutinin, legume lectin fungal, sugar binding protein; 2.04A {Spatholobus parviflorus} PDB: 3ipv_B 3usu_B* 3usu_A* Back     alignment and structure
>1dbn_A MAL, protein (leukoagglutinin); plant lectin, carbohydrate binding, sialyllactose, sugar BIN protein; HET: NAG SIA GAL BGC; 2.75A {Maackia amurensis} SCOP: b.29.1.1 Back     alignment and structure
>1v6i_A Agglutinin, PNA, galactose-binding lectin; open quaternary association, orthorhombic, carbohydrate specificity, protein crystallography; HET: GAL GLC; 2.15A {Arachis hypogaea} SCOP: b.29.1.1 PDB: 1bzw_A* 1v6j_A* 1v6k_A* 1v6l_A* 1v6m_A 1v6n_A 1v6o_A 2dva_A* 1cq9_A 1ciw_A* 1qf3_A* 1rir_A* 1rit_A* 2dh1_A 1cr7_A* 2dv9_A* 2dvb_A* 2dvd_A* 2dvf_A 2dvg_A* ... Back     alignment and structure
>2eig_A Lectin; L-fucosyl, N-acetyl-D-glucosamine, SUG binding protein; HET: NAG; 2.00A {Lotus tetragonolobus} Back     alignment and structure
>1fny_A BARK lectin, BARK agglutinin I,polypeptide A; legume lectin, jelly roll, sugar binding protein; 1.81A {Robinia pseudoacacia} SCOP: b.29.1.1 PDB: 1fnz_A* Back     alignment and structure
>1qnw_A Chitin binding lectin, UEA-II; carbohydrate binding; HET: NAG; 2.35A {Ulex europaeus} SCOP: b.29.1.1 PDB: 1dzq_A* 1qoo_A* 1qos_A* 1qot_A* Back     alignment and structure
>1gzc_A Erythrina crista-galli lectin; carbohydrate, sugar binding protein, saccharide, protein-carbohydrate interactions, lactose, glycoprotein; HET: LAT; 1.58A {Erythrina crista-galli} SCOP: b.29.1.1 PDB: 1gz9_A* 1fyu_A* 1ax0_A* 1ax1_A* 1ax2_A* 1axy_A* 1axz_A* 1lte_A* 1sfy_A* 1v00_A* 1uzz_A 1uzy_A* 3n35_A* 3n36_A* 3n3h_A* Back     alignment and structure
>1g7y_A Stem/LEAF lectin DB58; jelly roll fold, sugar binding protein; HET: NAG FUC FUL; 2.50A {Vigna unguiculata subsp} SCOP: b.29.1.1 PDB: 1lul_A 1lu1_A* 1bjq_A* 1lu2_A* Back     alignment and structure
>2bqp_A Protein (PEA lectin); D-glucopyranose complex, sugar binding protein; HET: GLC; 1.90A {Pisum sativum} SCOP: b.29.1.1 Back     alignment and structure
>1sbf_A Soybean agglutinin; lectin; HET: NAG GAL; 2.43A {Glycine max} SCOP: b.29.1.1 PDB: 1sbd_A* 1sbe_A* 1g9f_A* 2sba_A* Back     alignment and structure
>1n47_A Isolectin B4; cancer antigen, vicia villosa lectin, glycoprotein TN-bindin protein, carbohydrate recognition, sugar binding protein; HET: NAG FUC TNR; 2.70A {Vicia villosa} SCOP: b.29.1.1 Back     alignment and structure
>1hql_A Lectin; xenograft antigen, sugar BI protein; HET: GLA MBG NAG; 2.20A {Griffonia simplicifolia} SCOP: b.29.1.1 PDB: 1gnz_A* Back     alignment and structure
>1fat_A Phytohemagglutinin-L; glycoprotein, plant defense protein, lectin; HET: NAG; 2.80A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB: 1g8w_A* Back     alignment and structure
>1fx5_A UEA-I, UE-I, anti-H(O) lectin I; legume lectin, HOMO-dimer, fucose specific lectin, SUG binding protein; HET: NAG FUC BMA MAN; 2.20A {Ulex europaeus} SCOP: b.29.1.1 PDB: 1jxn_A* Back     alignment and structure
>2fmd_A Lectin, agglutinin, BMA; legume lectin, beta sandwich, protein-carbohydrate complex, sugar binding protein; HET: MAN; 1.90A {Bowringia mildbraedii} Back     alignment and structure
>1f9k_A Acidic lectin; legume lectin, glycosylated protein, H-antigenic specificity agglutinin, sugar binding protein; HET: NAG MAN AMG; 3.00A {Psophocarpus tetragonolobus} SCOP: b.29.1.1 PDB: 1fay_A* Back     alignment and structure
>1wbf_A Protein (agglutinin); lectin (agglutinin), legume lectin, protein crystallography, group specificity, saccharide free form; HET: NAG; 2.30A {Psophocarpus tetragonolobus} SCOP: b.29.1.1 PDB: 2d3s_A* 2dtw_A* 1wbl_A* 2dty_A* 2du0_A* 2du1_A* 2e51_A* 2e53_A* 2zmk_A* 2zml_A* 2zmn_A* 2e7t_A* 2e7q_A* Back     alignment and structure
>1gsl_A Griffonia simplicifolia lectin 4; glycoprotein, manganese; HET: FUC GAL MAG NAG BMA; 2.00A {Griffonia simplicifolia} SCOP: b.29.1.1 PDB: 1lec_A* 1led_A* Back     alignment and structure
>1avb_A Arcelin-1; lectin-like glycoprotein, plant defense, insecticidal activi lectin; HET: NAG; 1.90A {Phaseolus vulgaris} SCOP: b.29.1.1 Back     alignment and structure
>1ioa_A Arcelin-5A, ARC5A; lectin-like proteins, plant defense proteins, lectin; HET: NAG FUC; 2.70A {Phaseolus vulgaris} SCOP: b.29.1.1 Back     alignment and structure
>1dhk_B Bean lectin-like inhibitor, porcine pancreatic alpha-amylase; CO (hydrolase-inhibitor), complex (hydrolase-inhibitor) comple; HET: NAG; 1.85A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB: 1viw_B* Back     alignment and structure
>2ltn_A PEA lectin, alpha chain; 1.70A {Pisum sativum} SCOP: b.29.1.1 PDB: 1bqp_A* 1hkd_A 1ofs_A* 1rin_A* 1lof_C* 1len_A 1lem_A 1les_A* 2lal_A 1loe_A 1loa_A* 1loc_A* 1lod_A* 1lob_A 1lof_A* 1log_A* 1lgc_A* 1lgb_A* 2b7y_A* Back     alignment and structure
>2dur_A VIP36;, vesicular integral-membrane protein VIP36; beta sandwich, carbohydrate binding protein, cargo receptor, transport; HET: MAN; 1.65A {Canis lupus familiaris} PDB: 2dup_A 2duq_A* 2duo_A* 2e6v_A* Back     alignment and structure
>1gv9_A P58/ergic-53; lectin, carbohydrate binding; 1.46A {Rattus norvegicus} SCOP: b.29.1.13 PDB: 1r1z_A 3a4u_A 3lcp_A Back     alignment and structure
>1qmo_E Mannose binding lectin, FRIL; crosslink, hematopoietic progenitor, sugar complex; HET: MAN; 3.5A {Dolichos lab lab} SCOP: b.29.1.1 Back     alignment and structure
>1nls_A Concanavalin A; lectin, agglutinin; 0.94A {Canavalia ensiformis} SCOP: b.29.1.1 PDB: 1bxh_A* 1apn_A 1ces_A 1cjp_A* 1c57_A 1cvn_A* 1con_A 1dq1_A 1dq2_A 1dq4_A 1dq5_A 1dq6_A 1enq_A 1enr_A 1ens_A 1gic_A* 1dq0_A 1hqw_A 1gkb_A* 1i3h_A ... Back     alignment and structure
>2a6y_A EMP47P (FORM1); beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.42A {Saccharomyces cerevisiae} SCOP: b.29.1.13 Back     alignment and structure
>2a6z_A EMP47P (FORM2); beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.00A {Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a70_A 2a71_A Back     alignment and structure
>1qmo_A Mannose binding lectin, FRIL; crosslink, hematopoietic progenitor, sugar complex; HET: MAN; 3.5A {Dolichos lab lab} SCOP: b.29.1.1 Back     alignment and structure
>2a6v_A EMP46P; beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.52A {Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a6w_A 2a6x_A Back     alignment and structure
>1nls_A Concanavalin A; lectin, agglutinin; 0.94A {Canavalia ensiformis} SCOP: b.29.1.1 PDB: 1bxh_A* 1apn_A 1ces_A 1cjp_A* 1c57_A 1cvn_A* 1con_A 1dq1_A 1dq2_A 1dq4_A 1dq5_A 1dq6_A 1enq_A 1enr_A 1ens_A 1gic_A* 1dq0_A 1hqw_A 1gkb_A* 1i3h_A ... Back     alignment and structure
>2ltn_B PEA lectin, beta chain; 1.70A {Pisum sativum} SCOP: b.29.1.1 PDB: 1hkd_B 1rin_B* 1ofs_B* 1bqp_B* 1loe_B 1loa_B* 1loc_B* 1lod_B* 1lob_B 1lof_B* 1log_B* 1lof_D* 1les_B* 2b7y_B* 1lgc_B* 1lgb_B* 1len_B 1lem_B 2lal_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 271
d1hqla_236 b.29.1.1 (A:) Legume lectin {Griffonia simplicifol 2e-46
d1gzca_239 b.29.1.1 (A:) Legume lectin {Cockspur coral tree ( 2e-44
g1qmo.1230 b.29.1.1 (A:,E:) Legume lectin {Field bean (Dolich 2e-43
d1leda_243 b.29.1.1 (A:) Legume lectin {West-central african 4e-43
d1g9fa_251 b.29.1.1 (A:) Legume lectin {Soybean (Glycine max) 3e-41
d1g7ya_253 b.29.1.1 (A:) Legume lectin {Horse gram (Dolichos 5e-41
d1f9ka_234 b.29.1.1 (A:) Legume lectin {Winged bean (Psophoca 5e-41
d2d3sa1237 b.29.1.1 (A:1-237) Legume lectin {Winged bean (Pso 7e-41
d1fx5a_240 b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus 1e-40
d1avba_226 b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also ar 3e-40
d1g8wa_233 b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also ar 4e-40
d1v6ia_232 b.29.1.1 (A:) Legume lectin {Peanut (Arachis hypog 1e-39
d1n47a_233 b.29.1.1 (A:) Legume lectin {Hairy vetch (Vicia vi 7e-39
d1qnwa_237 b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus 9e-39
d1fnya_237 b.29.1.1 (A:) Legume lectin {Black locust (Robinia 1e-37
d1ukga_241 b.29.1.1 (A:) Legume lectin {Bloodwood tree (Ptero 1e-37
d1dbna_239 b.29.1.1 (A:) Legume lectin {Maackia amurensis, le 2e-36
g2ltn.1229 b.29.1.1 (A:,B:) Legume lectin {Garden pea (Pisum 2e-35
d1ioaa_228 b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also ar 4e-35
d1dhkb_204 b.29.1.1 (B:) Phytohemagglutinin-L, PHA-L, also ar 1e-29
d1nlsa_ 237 b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia 1e-28
d1nlsa_237 b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia 1e-14
d1gv9a_228 b.29.1.13 (A:) Carbohydrate-recognition domain of 9e-22
d2a6za1221 b.29.1.13 (A:7-227) Emp47p N-terminal domain {Bake 3e-14
d2a6va1218 b.29.1.13 (A:9-226) Emp46p N-terminal domain {Bake 7e-13
>d1hqla_ b.29.1.1 (A:) Legume lectin {Griffonia simplicifolia, lectin I-b4 [TaxId: 3850]} Length = 236 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Legume lectins
domain: Legume lectin
species: Griffonia simplicifolia, lectin I-b4 [TaxId: 3850]

 Score =  153 bits (387), Expect = 2e-46
 Identities = 73/245 (29%), Positives = 109/245 (44%), Gaps = 26/245 (10%)

Query: 24  VSFSFSSFNPKSCSDGSLICMGAVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVT 83
           VSF+F +F         +I  G    + G L L       +P Q      GR LYS PV 
Sbjct: 2   VSFTFPNFWSDVEDS--IIFQGDANTTAGTLQLCKTNQYGTPLQ---WSAGRALYSDPVQ 56

Query: 84  AW------PAMISTTFTIRISPYPNTTDSADGMTFVFATDTSPPTENSAGGNLGLSNGVS 137
            W       A   T FT  +    N    ADG+ F  A   S      AG  LGL N  +
Sbjct: 57  LWDNKTESVASFYTEFTFFLKITGNG--PADGLAFFLAPPDSDV--KDAGEYLGLFNKST 112

Query: 138 Q--------LAVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQV 189
                    +AVE DT+ N  + +P   H+GI++ ++ S   K  + S  D+ SG+    
Sbjct: 113 ATQPSKNQVVAVEFDTWTNPNFPEPSYRHIGINVNSIVSVATKRWEDS--DIFSGKIATA 170

Query: 190 HIYYDGWTKILYVYVAYAGNPLQKLIERPIPLSETIPSSVYVGFTASTGPDFSESHQVLD 249
            I YDG  +IL V ++Y  +    ++   + + + +P SV VG +ASTG +   +  +L 
Sbjct: 171 RISYDGSAEILTVVLSYP-DGSDYILSHSVDMRQNLPESVRVGISASTGNNQFLTVYILS 229

Query: 250 WTFTT 254
           W F++
Sbjct: 230 WRFSS 234
>d1gzca_ b.29.1.1 (A:) Legume lectin {Cockspur coral tree (Erythrina crista-galli) [TaxId: 49817]} Length = 239 Back     information, alignment and structure
>d1leda_ b.29.1.1 (A:) Legume lectin {West-central african legume (Griffonia simplicifolia) [TaxId: 3850]} Length = 243 Back     information, alignment and structure
>d1g9fa_ b.29.1.1 (A:) Legume lectin {Soybean (Glycine max) [TaxId: 3847]} Length = 251 Back     information, alignment and structure
>d1g7ya_ b.29.1.1 (A:) Legume lectin {Horse gram (Dolichos biflorus), different isoforms [TaxId: 3840]} Length = 253 Back     information, alignment and structure
>d1f9ka_ b.29.1.1 (A:) Legume lectin {Winged bean (Psophocarpus tetragonolobus), acidic lectin [TaxId: 3891]} Length = 234 Back     information, alignment and structure
>d2d3sa1 b.29.1.1 (A:1-237) Legume lectin {Winged bean (Psophocarpus tetragonolobus), basic agglutinin [TaxId: 3891]} Length = 237 Back     information, alignment and structure
>d1fx5a_ b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus), UEA-I [TaxId: 3902]} Length = 240 Back     information, alignment and structure
>d1avba_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 226 Back     information, alignment and structure
>d1g8wa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 233 Back     information, alignment and structure
>d1v6ia_ b.29.1.1 (A:) Legume lectin {Peanut (Arachis hypogaea) [TaxId: 3818]} Length = 232 Back     information, alignment and structure
>d1n47a_ b.29.1.1 (A:) Legume lectin {Hairy vetch (Vicia villosa), isolectin b4 [TaxId: 3911]} Length = 233 Back     information, alignment and structure
>d1qnwa_ b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus), UEA-II [TaxId: 3902]} Length = 237 Back     information, alignment and structure
>d1fnya_ b.29.1.1 (A:) Legume lectin {Black locust (Robinia pseudoacacia) [TaxId: 35938]} Length = 237 Back     information, alignment and structure
>d1ukga_ b.29.1.1 (A:) Legume lectin {Bloodwood tree (Pterocarpus angolensis) [TaxId: 182271]} Length = 241 Back     information, alignment and structure
>d1dbna_ b.29.1.1 (A:) Legume lectin {Maackia amurensis, leukoagglutinin [TaxId: 37501]} Length = 239 Back     information, alignment and structure
>d1ioaa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris), G02771, arcelin-5a [TaxId: 3885]} Length = 228 Back     information, alignment and structure
>d1dhkb_ b.29.1.1 (B:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 204 Back     information, alignment and structure
>d1nlsa_ b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Length = 237 Back     information, alignment and structure
>d1nlsa_ b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Length = 237 Back     information, alignment and structure
>d1gv9a_ b.29.1.13 (A:) Carbohydrate-recognition domain of P58/ERGIC-53 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 228 Back     information, alignment and structure
>d2a6za1 b.29.1.13 (A:7-227) Emp47p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221 Back     information, alignment and structure
>d2a6va1 b.29.1.13 (A:9-226) Emp46p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 218 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query271
d1hqla_236 Legume lectin {Griffonia simplicifolia, lectin I-b 100.0
d1leda_243 Legume lectin {West-central african legume (Griffo 100.0
d1fx5a_240 Legume lectin {Furze (Ulex europaeus), UEA-I [TaxI 100.0
d1qnwa_237 Legume lectin {Furze (Ulex europaeus), UEA-II [Tax 100.0
d1gzca_239 Legume lectin {Cockspur coral tree (Erythrina cris 100.0
d2d3sa1237 Legume lectin {Winged bean (Psophocarpus tetragono 100.0
d1g9fa_251 Legume lectin {Soybean (Glycine max) [TaxId: 3847] 100.0
g1qmo.1230 Legume lectin {Field bean (Dolichos lablab), Fril 100.0
d1dbna_239 Legume lectin {Maackia amurensis, leukoagglutinin 100.0
d1g8wa_233 Phytohemagglutinin-L, PHA-L, also arcelin {Kidney 100.0
d1g7ya_253 Legume lectin {Horse gram (Dolichos biflorus), dif 100.0
d1n47a_233 Legume lectin {Hairy vetch (Vicia villosa), isolec 100.0
d1v6ia_232 Legume lectin {Peanut (Arachis hypogaea) [TaxId: 3 100.0
d1f9ka_234 Legume lectin {Winged bean (Psophocarpus tetragono 100.0
d1fnya_237 Legume lectin {Black locust (Robinia pseudoacacia) 100.0
g2ltn.1229 Legume lectin {Garden pea (Pisum sativum) [TaxId: 100.0
d1ukga_241 Legume lectin {Bloodwood tree (Pterocarpus angolen 100.0
d1avba_226 Phytohemagglutinin-L, PHA-L, also arcelin {Kidney 100.0
d1ioaa_228 Phytohemagglutinin-L, PHA-L, also arcelin {Kidney 100.0
d1dhkb_204 Phytohemagglutinin-L, PHA-L, also arcelin {Kidney 100.0
d1gv9a_228 Carbohydrate-recognition domain of P58/ERGIC-53 {R 100.0
d1nlsa_ 237 Concanavalin A {Jack bean (Canavalia ensiformis) [ 99.98
d2a6za1221 Emp47p N-terminal domain {Baker's yeast (Saccharom 99.96
d2a6va1218 Emp46p N-terminal domain {Baker's yeast (Saccharom 99.96
d1nlsa_237 Concanavalin A {Jack bean (Canavalia ensiformis) [ 99.87
d1dyka1189 Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 84.45
d1dyka2185 Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 83.85
d1oq1a_223 Hypothetical protein YesU {Bacillus subtilis [TaxI 83.22
d1d2sa_170 Sex hormone-binding globulin {Human (Homo sapiens) 80.2
>d1hqla_ b.29.1.1 (A:) Legume lectin {Griffonia simplicifolia, lectin I-b4 [TaxId: 3850]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Legume lectins
domain: Legume lectin
species: Griffonia simplicifolia, lectin I-b4 [TaxId: 3850]

Probab=100.00  E-value=1.3e-56  Score=395.15  Aligned_cols=221  Identities=31%  Similarity=0.502  Sum_probs=192.1

Q ss_pred             CeeEEeCCCCCCCCCCCCeEEecceEEeCCeEEecCCCCCCCCCCCCCCcEEEEEecCceeecC------CCeeEEEEEE
Q 024176           23 PVSFSFSSFNPKSCSDGSLICMGAVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWP------AMISTTFTIR   96 (271)
Q Consensus        23 ~~~F~f~~F~~~~~~~~~l~l~G~A~~~~g~l~LT~~~~~~~~~~~~~~~~G~~~y~~Pi~l~~------~sFst~F~F~   96 (271)
                      +++|+|++|.+...  ++|+|+|+|.+.+|.|+||++...   ......++|||+|++||+||+      +||+|+|+|+
T Consensus         1 ~~sF~f~~F~~~~~--~~l~l~G~A~~~~~~l~LT~~~~~---~~~~~~s~Gra~y~~Pv~l~~~~t~~~asFsT~F~F~   75 (236)
T d1hqla_           1 SVSFTFPNFWSDVE--DSIIFQGDANTTAGTLQLCKTNQY---GTPLQWSAGRALYSDPVQLWDNKTESVASFYTEFTFF   75 (236)
T ss_dssp             CCEEEESCSCSCGG--GTEEEEETCEEETTEEECSCBCTT---SCBCSSCEEEEEESSCEECCCSTTCCCCEEEEEEEEE
T ss_pred             CEEEEeCCCCCCCc--CCEEEeccEEecCCEEEEecCCCC---CcccccceEEEEECCCEEeecCCCCceeEEEEEEEEE
Confidence            47999999986531  579999999999999999986531   112357899999999999998      7899999999


Q ss_pred             EecCCCCCCCCCceEEEEecCCCCCCCCCCCCCCCCCC--------CCceEEEEEeccCCCCCCCCCCCceEEecCCCCc
Q 024176           97 ISPYPNTTDSADGMTFVFATDTSPPTENSAGGNLGLSN--------GVSQLAVELDTYKNDYWSDPDANHMGIDIANLTS  168 (271)
Q Consensus        97 I~~~~~~~~~gdGlAF~l~~~~~~~~~g~~G~~lGl~~--------~~~~vAVEFDT~~N~~~~Dp~~nHvgi~~ns~~s  168 (271)
                      |...  ...+||||||+|+|.+  .+.+..|++||+.+        .++.||||||||+|.+++||+++|||||+|++.|
T Consensus        76 i~~~--~~~~gDGlAFvl~p~~--~~~~~~G~~lGl~~~~~~~~~~~~~~vAVEFDT~~n~~~~D~~~nHIgIdvns~~s  151 (236)
T d1hqla_          76 LKIT--GNGPADGLAFFLAPPD--SDVKDAGEYLGLFNKSTATQPSKNQVVAVEFDTWTNPNFPEPSYRHIGINVNSIVS  151 (236)
T ss_dssp             EEEC--SSCCCCEEEEEEECTT--CCCCCCGGGTTTSCTTTTTCGGGCCCEEEEEECSCCSSSCCCSSCEEEEEESSSSC
T ss_pred             EeCC--CCCCCceEEEEEeCCC--CCCCCCccccccccccccCCcccCceEEEEeeCccCCCCCCCCCCEEEEEcCCccc
Confidence            9874  5678999999999976  34567899999986        3577999999999998889999999999999998


Q ss_pred             cccccCCCCCCcCCCCCcEEEEEEEeCcceEEEEEEEeCCCCCceEEEEeecCCCCCCCceEEEEEeecCCCC-ccceEE
Q 024176          169 NPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPIPLSETIPSSVYVGFTASTGPDF-SESHQV  247 (271)
Q Consensus       169 ~~~~~~~~~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~~~p~~~~ls~~vdL~~~l~~~~yvGFSASTG~~~-~~~h~I  247 (271)
                      .++.++.  ..++.+|+.++|||+||+.+|+|+|+|++. ++.+|++++.+||+++|+++|||||||||| .. .+.|+|
T Consensus       152 ~~~~~~~--~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~-~~~~~~ls~~vdL~~~l~~~v~vGFSasTG-~~~~~~h~I  227 (236)
T d1hqla_         152 VATKRWE--DSDIFSGKIATARISYDGSAEILTVVLSYP-DGSDYILSHSVDMRQNLPESVRVGISASTG-NNQFLTVYI  227 (236)
T ss_dssp             SEEEECC--HHHHTSCSCEEEEEEEETTTTEEEEEEEET-TTEEEEEEEECCGGGTSCSEEEEEEEEECC-SCCCEEEEE
T ss_pred             ccccccc--cccccCCCEEEEEEEEeCCCcEEEEEEecC-CCCCeeEEEEeCHHHhCCCcEEEEEEeECC-CCCceEEEE
Confidence            8877663  457899999999999999999999999875 467899999999999999999999999999 64 677999


Q ss_pred             EEEEEEecC
Q 024176          248 LDWTFTTFP  256 (271)
Q Consensus       248 ~sWsf~~~~  256 (271)
                      ++|+|++++
T Consensus       228 ~sWsF~s~l  236 (236)
T d1hqla_         228 LSWRFSSNL  236 (236)
T ss_dssp             EEEEEEEEC
T ss_pred             EEeEeEecC
Confidence            999999875
>d1leda_ b.29.1.1 (A:) Legume lectin {West-central african legume (Griffonia simplicifolia) [TaxId: 3850]} Back     information, alignment and structure
>d1fx5a_ b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus), UEA-I [TaxId: 3902]} Back     information, alignment and structure
>d1qnwa_ b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus), UEA-II [TaxId: 3902]} Back     information, alignment and structure
>d1gzca_ b.29.1.1 (A:) Legume lectin {Cockspur coral tree (Erythrina crista-galli) [TaxId: 49817]} Back     information, alignment and structure
>d2d3sa1 b.29.1.1 (A:1-237) Legume lectin {Winged bean (Psophocarpus tetragonolobus), basic agglutinin [TaxId: 3891]} Back     information, alignment and structure
>d1g9fa_ b.29.1.1 (A:) Legume lectin {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d1dbna_ b.29.1.1 (A:) Legume lectin {Maackia amurensis, leukoagglutinin [TaxId: 37501]} Back     information, alignment and structure
>d1g8wa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1g7ya_ b.29.1.1 (A:) Legume lectin {Horse gram (Dolichos biflorus), different isoforms [TaxId: 3840]} Back     information, alignment and structure
>d1n47a_ b.29.1.1 (A:) Legume lectin {Hairy vetch (Vicia villosa), isolectin b4 [TaxId: 3911]} Back     information, alignment and structure
>d1v6ia_ b.29.1.1 (A:) Legume lectin {Peanut (Arachis hypogaea) [TaxId: 3818]} Back     information, alignment and structure
>d1f9ka_ b.29.1.1 (A:) Legume lectin {Winged bean (Psophocarpus tetragonolobus), acidic lectin [TaxId: 3891]} Back     information, alignment and structure
>d1fnya_ b.29.1.1 (A:) Legume lectin {Black locust (Robinia pseudoacacia) [TaxId: 35938]} Back     information, alignment and structure
>d1ukga_ b.29.1.1 (A:) Legume lectin {Bloodwood tree (Pterocarpus angolensis) [TaxId: 182271]} Back     information, alignment and structure
>d1avba_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1ioaa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris), G02771, arcelin-5a [TaxId: 3885]} Back     information, alignment and structure
>d1dhkb_ b.29.1.1 (B:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1gv9a_ b.29.1.13 (A:) Carbohydrate-recognition domain of P58/ERGIC-53 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1nlsa_ b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Back     information, alignment and structure
>d2a6za1 b.29.1.13 (A:7-227) Emp47p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2a6va1 b.29.1.13 (A:9-226) Emp46p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlsa_ b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Back     information, alignment and structure
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1oq1a_ b.29.1.17 (A:) Hypothetical protein YesU {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure