Citrus Sinensis ID: 024196

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
MVTGNNSHQEDGDRQQPAAKGGGATRSWGTTVSGQSVSTSGSVGSPSQSMATPASDSTFLRLNHLDIHGDDAGSQGAVVGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNR
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEcccccEEEEEEEcccEEEEEEccc
ccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccHccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEcEEEEEEccccEEEEEEEccccEEEEEEccc
mvtgnnshqedgdrqqpaakgggatrswgttvsgqsvstsgsvgspsqsmatpasdstflrlnhldihgddagsqgavvggkkkkrgqragggdksgrgLRQFSMKVCEKVESKGRTTYNEVADELVAefadpsnslatpdqqqydeknIRRRVYDALNVLMAMDIISKDKkeiqwkglprtslndIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRnerlyssgnapsggvalpfilvqtrphatveveisedmqlvhfdfnr
mvtgnnshqedgdrqqpaakgggatrswgttvsgqsvstsgsvgspsqSMATPASDSTFLRLNHLDIHGddagsqgavvggkkkkrgqragggdksgrglrqfSMKVCEKVESKGRTTYNEVADELVAEfadpsnslatpdqqqydeknIRRRVYDALNVLMAMDIISKdkkeiqwkglprtslndieeLKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRPHATVEveisedmqlvhfdfnr
MVTGNNSHQEDGDRQQPAAKGGGATRswgttvsgqsvstsgsvgspsqsMATPASDSTFLRLNHLDIHGDDAGSqgavvggkkkkrgqragggDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNR
****************************************************************************************************************************************************NIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHF****
******************************************************************************************************FSMKVCEKVESKGRTTYNEVADELVA*********************IRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTS**********************AYLQELEDQFVGLQNLI******************LPFILVQTRPHATVEVEISEDMQLVHFDFNR
******************************************************SDSTFLRLNHLDIHGDDA*************************RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNR
*************************************************************************************************RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVTGNNSHQEDGDRQQPAAKGGGATRSWGTTVSGQSVSTSGSVGSPSQSMATPASDSTFLRLNHLDIHGDDAGSQGAVVGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query271 2.2.26 [Sep-21-2011]
Q9FNY2 385 Transcription factor-like yes no 0.907 0.638 0.845 1e-117
Q9FNY3292 Transcription factor-like no no 0.686 0.636 0.512 3e-54
Q14186 410 Transcription factor Dp-1 yes no 0.675 0.446 0.513 3e-46
Q17QZ4 410 Transcription factor Dp-1 yes no 0.675 0.446 0.513 8e-46
Q08639 410 Transcription factor Dp-1 yes no 0.675 0.446 0.508 2e-45
Q14188 446 Transcription factor Dp-2 no no 0.819 0.497 0.444 4e-43
Q24318 445 Transcription factor Dp O yes no 0.660 0.402 0.478 3e-40
Q22703 598 Transcription factor dpl- yes no 0.634 0.287 0.451 3e-34
Q5H9I0 405 Transcription factor Dp f no no 0.675 0.451 0.422 5e-34
Q64163 446 Transcription factor Dp-2 no no 0.819 0.497 0.396 5e-33
>sp|Q9FNY2|DPB_ARATH Transcription factor-like protein DPB OS=Arabidopsis thaliana GN=DPB PE=1 SV=1 Back     alignment and function desciption
 Score =  421 bits (1081), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/253 (84%), Positives = 227/253 (89%), Gaps = 7/253 (2%)

Query: 24  ATRSWGTTVSGQSVSTSGSVGSPSQ------SMATPASDSTFLRLNHLDIHGDDAGSQGA 77
           +TRSWGT VSGQSVSTSGS+GSPS       ++ T  SD+TF RLN+LDI GDDAGSQGA
Sbjct: 23  STRSWGTAVSGQSVSTSGSMGSPSSRSEQTITVVTSTSDTTFQRLNNLDIQGDDAGSQGA 82

Query: 78  VVGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSL 137
             G KKKKRGQRA G DK+GRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFA P+N  
Sbjct: 83  -SGVKKKKRGQRAAGPDKTGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFALPNNDG 141

Query: 138 ATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGL 197
            +PDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW+GLPRTSL+DIEELK ERL L
Sbjct: 142 TSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRTSLSDIEELKNERLSL 201

Query: 198 RNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRPHATVEVE 257
           RNRIEKKTAY QELE+Q+VGLQNLIQRNE LYSSGNAPSGGVALPFILVQTRPHATVEVE
Sbjct: 202 RNRIEKKTAYSQELEEQYVGLQNLIQRNEHLYSSGNAPSGGVALPFILVQTRPHATVEVE 261

Query: 258 ISEDMQLVHFDFN 270
           ISEDMQLVHFDFN
Sbjct: 262 ISEDMQLVHFDFN 274
Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FNY3|DPA_ARATH Transcription factor-like protein DPA OS=Arabidopsis thaliana GN=DPA PE=1 SV=1 Back     alignment and function description
>sp|Q14186|TFDP1_HUMAN Transcription factor Dp-1 OS=Homo sapiens GN=TFDP1 PE=1 SV=1 Back     alignment and function description
>sp|Q17QZ4|TFDP1_BOVIN Transcription factor Dp-1 OS=Bos taurus GN=TFDP1 PE=2 SV=1 Back     alignment and function description
>sp|Q08639|TFDP1_MOUSE Transcription factor Dp-1 OS=Mus musculus GN=Tfdp1 PE=1 SV=1 Back     alignment and function description
>sp|Q14188|TFDP2_HUMAN Transcription factor Dp-2 OS=Homo sapiens GN=TFDP2 PE=1 SV=2 Back     alignment and function description
>sp|Q24318|TFDP_DROME Transcription factor Dp OS=Drosophila melanogaster GN=Dp PE=1 SV=2 Back     alignment and function description
>sp|Q22703|TFDP1_CAEEL Transcription factor dpl-1 OS=Caenorhabditis elegans GN=dpl-1 PE=1 SV=2 Back     alignment and function description
>sp|Q5H9I0|TFDP3_HUMAN Transcription factor Dp family member 3 OS=Homo sapiens GN=TFDP3 PE=1 SV=1 Back     alignment and function description
>sp|Q64163|TFDP2_MOUSE Transcription factor Dp-2 OS=Mus musculus GN=Tfdp2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query271
225440073349 PREDICTED: transcription factor-like pro 0.985 0.765 0.872 1e-128
356538615337 PREDICTED: transcription factor-like pro 0.885 0.712 0.890 1e-124
356497355338 PREDICTED: transcription factor-like pro 0.889 0.713 0.886 1e-123
297806297 389 hypothetical protein ARALYDRAFT_487116 [ 0.992 0.691 0.810 1e-123
449438797347 PREDICTED: transcription factor-like pro 0.937 0.731 0.827 1e-116
30680032 385 Transcription factor DP [Arabidopsis tha 0.907 0.638 0.845 1e-115
449476464348 PREDICTED: transcription factor-like pro 0.937 0.729 0.823 1e-115
224138754355 transcription factor DP, E2 dimerization 0.977 0.746 0.810 1e-112
33338106353 transcription factor DP1 [Populus tremul 0.977 0.750 0.806 1e-111
224068777299 transcription factor DP, E2 dimerization 0.811 0.735 0.886 1e-110
>gi|225440073|ref|XP_002282450.1| PREDICTED: transcription factor-like protein DPB [Vitis vinifera] gi|297741646|emb|CBI32778.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/274 (87%), Positives = 251/274 (91%), Gaps = 7/274 (2%)

Query: 1   MVTGNNSHQEDGDRQQPAAKGGGATRSWGTTVSGQSVSTSGSVGSPSQ----SMATPASD 56
           MVTG  SHQEDG++       GGATRSWGTTVSGQSVSTSGSVGSPS     ++ATPAS+
Sbjct: 1   MVTGG-SHQEDGEKNPATVSKGGATRSWGTTVSGQSVSTSGSVGSPSSRSEAALATPASE 59

Query: 57  STFLRLNHLDIHGDDAGSQGAVVGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKVESKGR 116
           +TFLRLNHLDIHGDDAGSQGA    +KKKRGQRA GGDKSGRGLRQFSMKVCEKVESKGR
Sbjct: 60  NTFLRLNHLDIHGDDAGSQGA--ANRKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGR 117

Query: 117 TTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW 176
           TTYNEVADELVAEFADPSNSL +PDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW
Sbjct: 118 TTYNEVADELVAEFADPSNSLTSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW 177

Query: 177 KGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPS 236
           KGLPRTSLNDIEELK +R+GLR RIEKK AYLQELE+QFVGLQNLIQRNE+LYSSGNAPS
Sbjct: 178 KGLPRTSLNDIEELKTDRIGLRGRIEKKAAYLQELEEQFVGLQNLIQRNEQLYSSGNAPS 237

Query: 237 GGVALPFILVQTRPHATVEVEISEDMQLVHFDFN 270
           GGVALPFILVQTRPHATVEVEISEDMQLVHFDFN
Sbjct: 238 GGVALPFILVQTRPHATVEVEISEDMQLVHFDFN 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356538615|ref|XP_003537797.1| PREDICTED: transcription factor-like protein DPB-like [Glycine max] Back     alignment and taxonomy information
>gi|356497355|ref|XP_003517526.1| PREDICTED: transcription factor-like protein DPB-like [Glycine max] Back     alignment and taxonomy information
>gi|297806297|ref|XP_002871032.1| hypothetical protein ARALYDRAFT_487116 [Arabidopsis lyrata subsp. lyrata] gi|297316869|gb|EFH47291.1| hypothetical protein ARALYDRAFT_487116 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449438797|ref|XP_004137174.1| PREDICTED: transcription factor-like protein DPB-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30680032|ref|NP_850757.1| Transcription factor DP [Arabidopsis thaliana] gi|75309250|sp|Q9FNY2.1|DPB_ARATH RecName: Full=Transcription factor-like protein DPB; AltName: Full=DP-like protein B; Short=AtDPbB; AltName: Full=E2F dimerization partner protein B gi|11125653|emb|CAC15484.1| DP-like protein [Arabidopsis thaliana] gi|110736268|dbj|BAF00104.1| transcription factor - like protein [Arabidopsis thaliana] gi|225898881|dbj|BAH30571.1| hypothetical protein [Arabidopsis thaliana] gi|332003216|gb|AED90599.1| Transcription factor DP [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449476464|ref|XP_004154744.1| PREDICTED: transcription factor-like protein DPB-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224138754|ref|XP_002322893.1| transcription factor DP, E2 dimerization partner protein [Populus trichocarpa] gi|222867523|gb|EEF04654.1| transcription factor DP, E2 dimerization partner protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|33338106|gb|AAQ13675.1|AF181998_1 transcription factor DP1 [Populus tremula x Populus tremuloides] gi|32187097|gb|AAP73785.1| DP1 [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
>gi|224068777|ref|XP_002326197.1| transcription factor DP, E2 dimerization partner protein [Populus trichocarpa] gi|222833390|gb|EEE71867.1| transcription factor DP, E2 dimerization partner protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query271
TAIR|locus:1005716177 385 DPB [Arabidopsis thaliana (tax 0.985 0.693 0.682 7.3e-91
TAIR|locus:2181788292 DPA [Arabidopsis thaliana (tax 0.645 0.599 0.545 4.1e-49
UNIPROTKB|F1P3E8 411 TFDP1 "Uncharacterized protein 0.642 0.423 0.527 6.6e-42
UNIPROTKB|F1Q0Q6 447 TFDP2 "Uncharacterized protein 0.642 0.389 0.522 6.6e-42
UNIPROTKB|C9J872248 TFDP2 "Transcription factor Dp 0.642 0.701 0.522 6.6e-42
UNIPROTKB|F8W6Z7 370 TFDP2 "Transcription factor Dp 0.642 0.470 0.522 6.6e-42
UNIPROTKB|F1Q0W2 415 TFDP1 "Uncharacterized protein 0.642 0.419 0.522 2.8e-41
UNIPROTKB|B4DLQ9 311 TFDP1 "Transcription factor Dp 0.642 0.559 0.522 2.8e-41
UNIPROTKB|F5H452 381 TFDP1 "Transcription factor Dp 0.642 0.456 0.522 2.8e-41
UNIPROTKB|Q14186 410 TFDP1 "Transcription factor Dp 0.642 0.424 0.522 2.8e-41
TAIR|locus:1005716177 DPB [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 906 (324.0 bits), Expect = 7.3e-91, P = 7.3e-91
 Identities = 183/268 (68%), Positives = 200/268 (74%)

Query:     3 TGNNSHQEDGDRQQPAAKGGGATRXXXXXXXXXXXXXXXXXXXXXXXMATPASDSTFLRL 62
             + +N H+ + +   P+ +  G                          + T  SD+TF RL
Sbjct:     8 SNHNHHESNNNNNNPSTRSWGTAVSGQSVSTSGSMGSPSSRSEQTITVVTSTSDTTFQRL 67

Query:    63 NHLDIHGDDAGSXXXXXXXXXXXXXXXXXXXDKSGRGLRQFSMKVCEKVESKGRTTYNEV 122
             N+LDI GDDAGS                   DK+GRGLRQFSMKVCEKVESKGRTTYNEV
Sbjct:    68 NNLDIQGDDAGSQGASGVKKKKRGQRAAGP-DKTGRGLRQFSMKVCEKVESKGRTTYNEV 126

Query:   123 ADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRT 182
             ADELVAEFA P+N   +PDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW+GLPRT
Sbjct:   127 ADELVAEFALPNNDGTSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRT 186

Query:   183 SLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALP 242
             SL+DIEELK ERL LRNRIEKKTAY QELE+Q+VGLQNLIQRNE LYSSGNAPSGGVALP
Sbjct:   187 SLSDIEELKNERLSLRNRIEKKTAYSQELEEQYVGLQNLIQRNEHLYSSGNAPSGGVALP 246

Query:   243 FILVQTRPHATVEVEISEDMQLVHFDFN 270
             FILVQTRPHATVEVEISEDMQLVHFDFN
Sbjct:   247 FILVQTRPHATVEVEISEDMQLVHFDFN 274
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005667 "transcription factor complex" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS
GO:0000082 "G1/S transition of mitotic cell cycle" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0005737 "cytoplasm" evidence=IDA
GO:0042023 "DNA endoreduplication" evidence=RCA;IMP
GO:0046982 "protein heterodimerization activity" evidence=IPI
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0051302 "regulation of cell division" evidence=RCA
TAIR|locus:2181788 DPA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3E8 TFDP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q0Q6 TFDP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|C9J872 TFDP2 "Transcription factor Dp-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F8W6Z7 TFDP2 "Transcription factor Dp-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q0W2 TFDP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B4DLQ9 TFDP1 "Transcription factor Dp-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F5H452 TFDP1 "Transcription factor Dp-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q14186 TFDP1 "Transcription factor Dp-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FNY2DPB_ARATHNo assigned EC number0.84580.90770.6389yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.6__250__AT5G03415.1
annotation not avaliable (389 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
fgenesh1_pm.C_scaffold_1003009
annotation not avaliable (415 aa)
    ••••0.678
fgenesh2_kg.4__1634__AT2G36010.3
annotation not avaliable (486 aa)
    ••• 0.676
fgenesh2_kg.6__2206__AT5G22220.2
annotation not avaliable (457 aa)
    ••••0.656
fgenesh2_kg.3__1291__AT3G12280.1
annotation not avaliable (1012 aa)
    • • 0.503
Al_scaffold_0006_1397
annotation not avaliable (356 aa)
     •• 0.403

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query271
pfam08781141 pfam08781, DP, Transcription factor DP 1e-46
pfam0231967 pfam02319, E2F_TDP, E2F/DP family winged-helix DNA 2e-19
>gnl|CDD|192151 pfam08781, DP, Transcription factor DP Back     alignment and domain information 
 Score =  152 bits (386), Expect = 1e-46
 Identities = 48/87 (55%), Positives = 58/87 (66%)

Query: 185 NDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFI 244
            +IE+L+ ER     RIE+K A LQEL  Q V L+NL+QRN+ L SSGN PS G+ LPFI
Sbjct: 1   QEIEKLEEERQKRIERIEQKQAQLQELILQQVALKNLVQRNQELESSGNVPSSGIQLPFI 60

Query: 245 LVQTRPHATVEVEISEDMQLVHFDFNR 271
           LV T   A ++ EISED    HFDFN 
Sbjct: 61  LVNTSKKAVIDCEISEDKSEYHFDFNS 87

DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer and negatively regulates the G1-S transition. Length = 141
>gnl|CDD|202203 pfam02319, E2F_TDP, E2F/DP family winged-helix DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 271
KOG2829 326 consensus E2F-like protein [Transcription] 100.0
PF08781142 DP: Transcription factor DP; InterPro: IPR014889 D 99.95
KOG2577 354 consensus Transcription factor E2F/dimerization pa 99.91
PF0231971 E2F_TDP: E2F/DP family winged-helix DNA-binding do 99.7
KOG2578 388 consensus Transcription factor E2F/dimerization pa 98.9
KOG2578388 consensus Transcription factor E2F/dimerization pa 95.8
PF0197868 TrmB: Sugar-specific transcriptional regulator Trm 95.41
COG1378247 Predicted transcriptional regulators [Transcriptio 92.94
smart0042053 HTH_DEOR helix_turn_helix, Deoxyribose operon repr 90.36
COG3355126 Predicted transcriptional regulator [Transcription 89.31
PF0540268 PqqD: Coenzyme PQQ synthesis protein D (PqqD); Int 88.63
smart0034691 HTH_ICLR helix_turn_helix isocitrate lyase regulat 86.56
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 83.39
PF0901269 FeoC: FeoC like transcriptional regulator; InterPr 83.07
PF0933952 HTH_IclR: IclR helix-turn-helix domain; InterPro: 82.55
smart00347101 HTH_MARR helix_turn_helix multiple antibiotic resi 80.97
smart0041866 HTH_ARSR helix_turn_helix, Arsenical Resistance Op 80.55
>KOG2829 consensus E2F-like protein [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=5.3e-63  Score=456.95  Aligned_cols=180  Identities=61%  Similarity=0.898  Sum_probs=173.0

Q ss_pred             CCCccccccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCC-CCCCCChhhhccccchhhhhhHHHHhhhccceeec
Q 024196           92 GGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSN-SLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD  170 (271)
Q Consensus        92 ~~~k~~~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~-~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~  170 (271)
                      .++++|+|||||||+||+||++||.|||+||||+||++|..+++ ....+++++||+|||||||||||||||||+||+|+
T Consensus        38 ks~k~g~gLRhfs~kVCeKve~Kg~TtYneVADelVaef~~~n~~~~i~~n~~~yd~KNIRRRVYDALNVlmAmnIIsKd  117 (326)
T KOG2829|consen   38 KSDKAGGGLRHFSMKVCEKVERKGTTTYNEVADELVAEFAGANNYSHICPNEQEYDQKNIRRRVYDALNVLMAMNIISKD  117 (326)
T ss_pred             CCCCCCcchhhhhHHHHHHHHhcCCccHHHHHHHHHHHHhccccccccCccccccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence            36789999999999999999999999999999999999998876 35678899999999999999999999999999999


Q ss_pred             CCceEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccEEEEEcCC
Q 024196          171 KKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRP  250 (271)
Q Consensus       171 Kk~i~W~G~~~~s~~~~~~Lk~E~~~l~e~I~~Kk~~LqEL~~Q~~~lknLI~RNk~l~~~~~~~~~~i~LPFIvV~T~~  250 (271)
                      ||.|+|+|+|.++.+++++|++|+.+++++|++|+++|+||+.|+++|++||+||+.+++++..|.+.|+||||||+|+|
T Consensus       118 KKEIrW~GLP~~ss~dv~~le~Er~k~~erI~kK~a~lqEl~~q~~~fknLV~RN~~~e~~~~~P~~~i~LPFiiinT~k  197 (326)
T KOG2829|consen  118 KKEIRWIGLPATSSQDVSELEEERKKRMERIKKKAAQLQELIEQVSAFKNLVQRNRHAESQGQPPSENIHLPFIIINTSK  197 (326)
T ss_pred             cceeeeeccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCcccccceEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999888888888999999999999


Q ss_pred             CcEEEEeecCCceEEEEeecC
Q 024196          251 HATVEVEISEDMQLVHFDFNR  271 (271)
Q Consensus       251 ~t~IeceiseD~~~~~F~F~~  271 (271)
                      +|+|+|+||||+++|||+||+
T Consensus       198 ~a~IeceiseDks~~~F~Fnk  218 (326)
T KOG2829|consen  198 KAVIECEISEDKSEYLFKFNK  218 (326)
T ss_pred             CceEEEEecccceeeeeecCC
Confidence            999999999999999999995

>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression Back     alignment and domain information
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription] Back     alignment and domain information
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle Back     alignment and domain information
>KOG2578 consensus Transcription factor E2F/dimerization partner (TDP)-like proteins [Transcription] Back     alignment and domain information
>KOG2578 consensus Transcription factor E2F/dimerization partner (TDP)-like proteins [Transcription] Back     alignment and domain information
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis Back     alignment and domain information
>COG1378 Predicted transcriptional regulators [Transcription] Back     alignment and domain information
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor Back     alignment and domain information
>COG3355 Predicted transcriptional regulator [Transcription] Back     alignment and domain information
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences Back     alignment and domain information
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif Back     alignment and domain information
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein Back     alignment and domain information
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query271
1cf7_B95 Structural Basis Of Dna Recognition By The Heterodi 4e-32
2aze_A155 Structure Of The Rb C-Terminal Domain Bound To An E 5e-06
>pdb|1CF7|B Chain B, Structural Basis Of Dna Recognition By The Heterodimeric Cell Cycle Transcription Factor E2f-Dp Length = 95 Back     alignment and structure 
Iteration: 1

 Score =  134 bits (338), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 75/90 (83%), Gaps = 2/90 (2%)
Query: 94  DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRR 153
           DK+G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N LA      YD+KNIRRR
Sbjct: 6   DKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAA--DSAYDQKNIRRR 63
Query: 154 VYDALNVLMAMDIISKDKKEIQWKGLPRTS 183
           VYDALNVLMAM+IISK+KKEI+W GLP  S
Sbjct: 64  VYDALNVLMAMNIISKEKKEIKWIGLPTNS 93
>pdb|2AZE|A Chain A, Structure Of The Rb C-Terminal Domain Bound To An E2f1-Dp1 Heterodimer Length = 155 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query271
1cf7_B95 Protein (transcription factor DP-2); E2F, winged-h 8e-43
2aze_A155 Transcription factor DP-1; coiled coil, beta sandw 6e-34
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 3e-06
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
1cf7_A76 Protein (transcription factor E2F-4); E2F, winged- 9e-04
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Length = 95 Back     alignment and structure
 Score =  140 bits (354), Expect = 8e-43
 Identities = 65/95 (68%), Positives = 77/95 (81%), Gaps = 2/95 (2%)

Query: 89  RAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEK 148
           R+  GDK+G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N L       YD+K
Sbjct: 1   RSKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHL--AADSAYDQK 58

Query: 149 NIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTS 183
           NIRRRVYDALNVLMAM+IISK+KKEI+W GLP  S
Sbjct: 59  NIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNS 93
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1 Length = 155 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Length = 76 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query271
1cf7_B95 Protein (transcription factor DP-2); E2F, winged-h 100.0
2aze_A155 Transcription factor DP-1; coiled coil, beta sandw 99.94
1cf7_A76 Protein (transcription factor E2F-4); E2F, winged- 99.7
2aze_B106 Transcription factor E2F1; coiled coil, beta sandw 97.77
1sfx_A109 Conserved hypothetical protein AF2008; structural 93.04
3g3z_A145 NMB1585, transcriptional regulator, MARR family; t 91.35
1qbj_A81 Protein (double-stranded RNA specific adenosine D 91.13
1qgp_A77 Protein (double stranded RNA adenosine deaminase); 90.73
1ku9_A152 Hypothetical protein MJ223; putative transcription 89.46
3r0a_A123 Putative transcriptional regulator; structural gen 89.16
1oyi_A82 Double-stranded RNA-binding protein; (alpha+beta) 88.22
2oqg_A114 Possible transcriptional regulator, ARSR family P; 87.9
2htj_A81 P fimbrial regulatory protein KS71A; winged helix- 87.84
1lj9_A144 Transcriptional regulator SLYA; HTH DNA binding pr 87.84
3bpv_A138 Transcriptional regulator; MARR, DNA binding, tran 86.82
2hr3_A147 Probable transcriptional regulator; MCSG, structur 86.2
2a61_A145 Transcriptional regulator TM0710; APC4350, MCSG, m 86.1
1ub9_A100 Hypothetical protein PH1061; helix-turn-helix moti 85.33
3cjn_A162 Transcriptional regulator, MARR family; silicibact 84.85
3bj6_A152 Transcriptional regulator, MARR family; helix-turn 84.6
2qww_A154 Transcriptional regulator, MARR family; YP_013417. 84.6
2nyx_A168 Probable transcriptional regulatory protein, RV14; 84.29
3deu_A166 Transcriptional regulator SLYA; MARR, WING-helix, 84.12
3s2w_A159 Transcriptional regulator, MARR family; structural 84.09
3ech_A142 MEXR, multidrug resistance operon repressor; winge 83.92
3bro_A141 Transcriptional regulator; helix_TURN_helix, multi 83.76
3kp7_A151 Transcriptional regulator TCAR; multiple drug resi 83.68
3bja_A139 Transcriptional regulator, MARR family, putative; 83.14
3k0l_A162 Repressor protein; helix-turn-helix, structural ge 82.45
1okr_A123 MECI, methicillin resistance regulatory protein ME 82.16
1p6r_A82 Penicillinase repressor; transcription regulation, 82.05
2fbh_A146 Transcriptional regulator PA3341; MARR, transcript 82.0
2rdp_A150 Putative transcriptional regulator MARR; PFAM PF01 81.91
3cuo_A99 Uncharacterized HTH-type transcriptional regulato; 81.88
3oop_A143 LIN2960 protein; protein structure initiative, PSI 81.84
1s3j_A155 YUSO protein; structural genomics, MARR transcript 81.63
2nnn_A140 Probable transcriptional regulator; structural gen 81.29
2fu4_A83 Ferric uptake regulation protein; DNA binding doma 81.17
4hbl_A149 Transcriptional regulator, MARR family; HTH, trans 81.07
2fa5_A162 Transcriptional regulator MARR/EMRR family; multip 80.91
2eth_A154 Transcriptional regulator, putative, MAR family; M 80.58
3nrv_A148 Putative transcriptional regulator (MARR/EMRR FAM; 80.37
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Back     alignment and structure
Probab=100.00  E-value=9.8e-36  Score=236.65  Aligned_cols=93  Identities=69%  Similarity=1.100  Sum_probs=78.2

Q ss_pred             CCCCCccccccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceee
Q 024196           90 AGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK  169 (271)
Q Consensus        90 ~~~~~k~~~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K  169 (271)
                      ..+++++++||||||++|||||++++.|||+|||++||+||..+.++.  +.+++||++|+|||||||||||+|||||+|
T Consensus         2 ~~~~~k~~~GLr~fS~kVcekVk~k~~Tty~eVAdeLV~e~~~~~~~~--~~~~~~d~~~~rRRvYD~~NVl~a~gii~K   79 (95)
T 1cf7_B            2 SKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHL--AADSAYDQKNIRRRVYDALNVLMAMNIISK   79 (95)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHSEECHHHHHHHHHHHHHTCTTCC--GGGSHHHHHHHHHHHHHHHHHHHHTTSBCC
T ss_pred             CccccccCccHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcccccC--ccchhcccccchhhHHHHHHHHHHhcceec
Confidence            346799999999999999999999999999999999999999876554  567899999999999999999999999999


Q ss_pred             cCCceEEecCCCCCh
Q 024196          170 DKKEIQWKGLPRTSL  184 (271)
Q Consensus       170 ~Kk~i~W~G~~~~s~  184 (271)
                      +||.|+|+|++.++.
T Consensus        80 ~k~~i~W~g~~~~~~   94 (95)
T 1cf7_B           80 EKKEIKWIGLPTNSA   94 (95)
T ss_dssp             CSSCEEBCCCC----
T ss_pred             CCCEEEEecCCcccc
Confidence            999999999988754
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1 Back     alignment and structure
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Back     alignment and structure
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2 Back     alignment and structure
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 Back     alignment and structure
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} Back     alignment and structure
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A Back     alignment and structure
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 Back     alignment and structure
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} Back     alignment and structure
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 Back     alignment and structure
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} Back     alignment and structure
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 Back     alignment and structure
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 Back     alignment and structure
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* Back     alignment and structure
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 Back     alignment and structure
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28 Back     alignment and structure
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} Back     alignment and structure
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 Back     alignment and structure
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei} Back     alignment and structure
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A Back     alignment and structure
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28 Back     alignment and structure
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A Back     alignment and structure
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus} Back     alignment and structure
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} Back     alignment and structure
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A Back     alignment and structure
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B Back     alignment and structure
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} Back     alignment and structure
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} Back     alignment and structure
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} Back     alignment and structure
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 Back     alignment and structure
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli} Back     alignment and structure
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis} Back     alignment and structure
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} Back     alignment and structure
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 Back     alignment and structure
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 271
d1cf7b_82 a.4.5.17 (B:) Cell cycle transcription factor DP-2 9e-48
d2azea1148 e.63.1.1 (A:199-346) Transcription factor DP-1 {Hu 2e-38
d1cf7a_67 a.4.5.17 (A:) Cell cycle transcription factor E2F- 6e-04
>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Cell cycle transcription factor e2f-dp
domain: Cell cycle transcription factor DP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  151 bits (384), Expect = 9e-48
 Identities = 59/84 (70%), Positives = 69/84 (82%), Gaps = 2/84 (2%)

Query: 97  GRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYD 156
           G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N         YD+KNIRRRVYD
Sbjct: 1   GKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNH--LAADSAYDQKNIRRRVYD 58

Query: 157 ALNVLMAMDIISKDKKEIQWKGLP 180
           ALNVLMAM+IISK+KKEI+W GLP
Sbjct: 59  ALNVLMAMNIISKEKKEIKWIGLP 82
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 148 Back     information, alignment and structure
>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]} Length = 67 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query271
d1cf7b_82 Cell cycle transcription factor DP-2 {Human (Homo 100.0
d2azea1148 Transcription factor DP-1 {Human (Homo sapiens) [T 99.93
d1cf7a_67 Cell cycle transcription factor E2F-4 {Human (Homo 99.55
d2azeb1101 Transcription factor E2F1 {Human (Homo sapiens) [T 98.1
d1sfxa_109 Hypothetical protein AF2008 {Archaeoglobus fulgidu 95.04
d2a61a1139 Transcriptional regulator TM0710 {Thermotoga marit 94.85
d1mkma175 Transcriptional regulator IclR, N-terminal domain 87.56
d1biaa163 Biotin repressor, N-terminal domain {Escherichia c 87.0
d1ub9a_100 Hypothetical protein PH1061 {Archaeon Pyrococcus h 86.04
d1s3ja_143 Putative transcriptional regulator YusO {Bacillus 83.24
d2d1ha1109 Hypothetical transcriptional regulator ST1889 {Sul 83.02
d1ku9a_151 DNA-binding protein Mj223 {Archaeon Methanococcus 82.4
>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Cell cycle transcription factor e2f-dp
domain: Cell cycle transcription factor DP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-38  Score=243.57  Aligned_cols=82  Identities=72%  Similarity=1.162  Sum_probs=76.8

Q ss_pred             ccccchhHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCChhhhccccchhhhhhHHHHhhhccceeecCCceEE
Q 024196           97 GRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW  176 (271)
Q Consensus        97 ~~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~d~K~ikRRVYD~lNVL~ai~lI~K~Kk~i~W  176 (271)
                      |+||||||++|||+|+++++|||+||||+||+||..+...  .+.+++||+||||||||||||||+|++||+|+||.|+|
T Consensus         1 gkgLr~~S~kVcekV~~k~~TtY~eVAdeLv~e~~~~~~~--~~~~~~~d~KNIRRRVYDALNVLmA~~II~K~kK~I~W   78 (82)
T d1cf7b_           1 GKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNH--LAADSAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKW   78 (82)
T ss_dssp             CCHHHHHHHHHHHHHHHHSEECHHHHHHHHHHHHHTCTTC--CGGGSHHHHHHHHHHHHHHHHHHHHTTSBCCCSSCEEB
T ss_pred             CccHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhccC--CCcchhhcchhhhHHHHHHHHHHHHHhhhhhcCceeEe
Confidence            6899999999999999999999999999999999987654  34568999999999999999999999999999999999


Q ss_pred             ecCC
Q 024196          177 KGLP  180 (271)
Q Consensus       177 ~G~~  180 (271)
                      +|+|
T Consensus        79 ~Glp   82 (82)
T d1cf7b_          79 IGLP   82 (82)
T ss_dssp             CCCC
T ss_pred             ecCC
Confidence            9997
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure