Citrus Sinensis ID: 024205

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
Protein Sequence
MASVLHFSYILGPVGSGRGYCNCQYHASRFCRQILNKYRSRTTPGLSISLPLHSTWTAKRSPLCSNITCSATDRSDPEISSAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLTPVYVSEWSK
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEEEEccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccEEHHHHccccEEEEEEccHHHHHHHHHHcHHHHHHHHHcccEEEEEEcccccccccccHHHHHHHHHHHHcccEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccccccccEEEcHEHHHHHHHHcHHHccccccccccccccccccccccccccHccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccEEEHHHHccccEEEEEEccHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccHHHHHHHHHHHEEccEEHHHHcc
Coil and Loop (DISEMBL)
MASVLHFSYIlgpvgsgrgycncqyhASRFCRQILNKyrsrttpglsislplhstwtakrsplcsnitcsatdrsdpeisSAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGAlanparaadvpEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLklrvdekkiisVNNLRGIARLVICSgpasyimesfkrsepfteSLLERGVLVVSfttdgnipsfefeeSEEMKEFTRKRKRLWQLTPVYVSEWSK
Flexible Loop (DISEMBL)
MASVLHFSYILGPVGSGRGYCNCQYHASRFCRQILNKYRSRTTPGLSISLPLhstwtakrsplcSNITcsatdrsdpeissAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAqlarlsreeslsnlklrvdekkiisvnnlrgiaRLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTdgnipsfefeeseemkeftrkrkrlwqltpvyvsewsk
Low Complexity Region (SEG)
MASVLHFSYILGPVGSGRGYCNCQYHASRFCRQILNKYRSRTTPGLSISLPLHSTWTAKRSPLCSNITCSATDRSDPEISSAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPsfefeeseeMKEFTRKRKRLWQLTPVYVSEWSK
Disordered region (IsUnstruct)
***VLHFSYILGPVGSGRGYCNCQYHASRFCRQILNKYRSRTTPGLSISLPLHSTWTAKRSPLCSNITCS*************RIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSR********************LKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSF***************KRLWQLTPVYVS****
Disordered Region (DISOPRED)
*****HFSYILGPVGSGRGYCNCQYHASRFCRQILN****RTT**LSIS**************************************EVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRE*********************LRVD*KKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTD************************WQLTPVYVSEW**
Disordered Region (DISEMBL)
MASVLHFSYILGPVGSGRGYCNCQYHASRFCRQILNKYRSRTTPGLSISLPLHSTWTAKRSPLCSNITCS*********SSAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFE************KRKRLWQLTPVYVSEWSK
Disordered Region (DISPRO)
*ASVLHFSYILGPVGSGRGYCNCQYHASRFCRQILNKYR**************************************EISSAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLTPVYVSEWSK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASVLHFSYILGPVGSGRGYCNCQYHASRFCRQILNKYRSRTTPGLSISLPLHSTWTAKRSPLCSNITCSATDRSDPEISSAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLTPVYVSEWSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
224129560	300	predicted protein [Populus trichocarpa]	0.760	0.686	0.759	3e-87
356548113	326	PREDICTED: uncharacterized protein LOC10	0.789	0.656	0.726	9e-82
359480082	328	PREDICTED: uncharacterized protein LOC10	0.697	0.576	0.783	1e-81
297744261	346	unnamed protein product [Vitis vinifera]	0.697	0.546	0.783	2e-81
388514469	334	unknown [Lotus japonicus]	0.885	0.718	0.648	2e-80
449468602	338	PREDICTED: uncharacterized protein LOC10	0.752	0.603	0.708	1e-78
255560289	331	conserved hypothetical protein [Ricinus	0.763	0.625	0.770	7e-75
297803184	328	hypothetical protein ARALYDRAFT_913640 [	0.874	0.722	0.594	7e-74
18417257	347	uncharacterized protein [Arabidopsis tha	0.797	0.622	0.630	3e-73
4218124	331	hypothetical protein [Arabidopsis thalia	0.797	0.652	0.630	3e-73

>gi|224129560|ref|XP_002320616.1| predicted protein [Populus trichocarpa] gi|222861389|gb|EEE98931.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (839), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 158/208 (75%), Positives = 186/208 (89%), Gaps = 2/208 (0%)

Query: 65  SNITCSATDRSDP--EISSAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGA 122
           S ITCSA ++  P  E+SS A+IR+EVLSPFR+VRMFFYLAF+ASG+LGGLIA T+LI A
Sbjct: 30  STITCSAANKPSPSTEVSSTAKIRSEVLSPFRTVRMFFYLAFLASGALGGLIATTRLIAA 89

Query: 123 LANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDE 182
           LANP+RAA+VPEILKGL ID+ A ++FAFLY RENKAKN QLARLSREE+LSNLKLRVDE
Sbjct: 90  LANPSRAAEVPEILKGLGIDIGAAAIFAFLYYRENKAKNVQLARLSREENLSNLKLRVDE 149

Query: 183 KKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEF 242
           KKIISV++LRG+ARLVIC+GPA +I+ESFK SEPFT+SLL+RGVLVV F ++GN+PSFEF
Sbjct: 150 KKIISVSSLRGVARLVICAGPAPFILESFKLSEPFTQSLLDRGVLVVPFASNGNLPSFEF 209

Query: 243 EESEEMKEFTRKRKRLWQLTPVYVSEWS 270
           +E EEMKE T KRKRLWQL P+YVSEWS
Sbjct: 210 DEGEEMKELTTKRKRLWQLAPIYVSEWS 237

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548113|ref|XP_003542448.1| PREDICTED: uncharacterized protein LOC100799768 [Glycine max]

 Score =  309 bits (791), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 159/219 (72%), Positives = 190/219 (86%), Gaps = 5/219 (2%)

Query: 55  TWTAKRSPLCSNITCSATDR--SDPEISSAARIRNEVLSPFRSVRMFFYLAFVASGSLGG 112
           +++ +R+   + I CSA ++  S  EISS A+IR+EVLSPFRSVRMFFY+AFVASG+LGG
Sbjct: 49  SYSHQRASSFATIVCSAANKPSSSSEISSTAKIRSEVLSPFRSVRMFFYIAFVASGALGG 108

Query: 113 LIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREES 172
            IA TQLIGALAN +RA++VPEILKGL ID++AVSLFAFLY RENKAKNAQ+ARLSREES
Sbjct: 109 FIATTQLIGALANSSRASEVPEILKGLGIDLAAVSLFAFLYFRENKAKNAQVARLSREES 168

Query: 173 LSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFT 232
           LSNLKLRVDEKKII VN+LRGIARLVIC+GPAS++ ESFKRSEPFT+SLL+RGVLVV F 
Sbjct: 169 LSNLKLRVDEKKIIPVNSLRGIARLVICAGPASFVTESFKRSEPFTDSLLDRGVLVVPFV 228

Query: 233 TDGNIPSFEFEESEEMKEFTRKRKRLWQLTPVYVSEWSK 271
           TDGN P+ EFEE+EE+     +RKRLWQL PVY++EWS+
Sbjct: 229 TDGNSPALEFEETEEL---ATRRKRLWQLAPVYINEWSE 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480082|ref|XP_002267644.2| PREDICTED: uncharacterized protein LOC100253269 [Vitis vinifera]

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 148/189 (78%), Positives = 170/189 (89%)

Query: 83  ARIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSID 142
           A+IR+EVLSPFR+VRMFFYLAF+ASG+LGGLIA TQLI AL N +RA  VP+ILKGL ID
Sbjct: 77  AKIRSEVLSPFRTVRMFFYLAFIASGALGGLIATTQLIAALTNSSRAPLVPDILKGLGID 136

Query: 143 VSAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSG 202
           + AV++FAFLYSRE+ AKNAQLARL+REESLSNLKLRVDEKK+ISVN+LRGIARLVIC+G
Sbjct: 137 IGAVAIFAFLYSRESSAKNAQLARLTREESLSNLKLRVDEKKVISVNDLRGIARLVICAG 196

Query: 203 PASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLT 262
           PA +I ESFK S+PFT+ LL+RGVLVV F TDG +PSFE+EESEEMK+ T KRKRLWQL 
Sbjct: 197 PAPFIAESFKLSQPFTQGLLDRGVLVVPFVTDGKLPSFEYEESEEMKDITTKRKRLWQLV 256

Query: 263 PVYVSEWSK 271
           PVYVSEWSK
Sbjct: 257 PVYVSEWSK 265

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744261|emb|CBI37231.3| unnamed protein product [Vitis vinifera]

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 148/189 (78%), Positives = 170/189 (89%)

Query: 83  ARIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSID 142
           A+IR+EVLSPFR+VRMFFYLAF+ASG+LGGLIA TQLI AL N +RA  VP+ILKGL ID
Sbjct: 95  AKIRSEVLSPFRTVRMFFYLAFIASGALGGLIATTQLIAALTNSSRAPLVPDILKGLGID 154

Query: 143 VSAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSG 202
           + AV++FAFLYSRE+ AKNAQLARL+REESLSNLKLRVDEKK+ISVN+LRGIARLVIC+G
Sbjct: 155 IGAVAIFAFLYSRESSAKNAQLARLTREESLSNLKLRVDEKKVISVNDLRGIARLVICAG 214

Query: 203 PASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLT 262
           PA +I ESFK S+PFT+ LL+RGVLVV F TDG +PSFE+EESEEMK+ T KRKRLWQL 
Sbjct: 215 PAPFIAESFKLSQPFTQGLLDRGVLVVPFVTDGKLPSFEYEESEEMKDITTKRKRLWQLV 274

Query: 263 PVYVSEWSK 271
           PVYVSEWSK
Sbjct: 275 PVYVSEWSK 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514469|gb|AFK45296.1| unknown [Lotus japonicus]

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/245 (64%), Positives = 187/245 (76%), Gaps = 5/245 (2%)

Query: 32  RQILNKYRS--RTTPGLSISLPLHSTWTAKRSPLCSNITCSATDRSDPEISS---AARIR 86
           R ++N +R+      G+S    L  T    R    + I CSA+++  P  S     ARIR
Sbjct: 28  RNLINNHRNFFSGNKGVSYGHNLFYTDPRTRRASLATILCSASNKPSPSSSEISSTARIR 87

Query: 87  NEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAV 146
            EVLSPFRS+RMFFY+AF+AS SLG  IA TQLIGALAN +RA+ VPEILKGL ID+ AV
Sbjct: 88  TEVLSPFRSLRMFFYVAFIASASLGAFIAATQLIGALANSSRASQVPEILKGLGIDIGAV 147

Query: 147 SLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASY 206
           S+FAFLY R+NKAKNAQ ARLSREE LSNLKLRVDEKKII V++LRGIARLVIC+GP S+
Sbjct: 148 SIFAFLYFRDNKAKNAQEARLSREEFLSNLKLRVDEKKIIPVSSLRGIARLVICAGPESF 207

Query: 207 IMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLTPVYV 266
           I ESFKRSEPFTE L++RGVLVV F TDGN P  EFEE+EEMK+   +RKRLWQLTPVY+
Sbjct: 208 ITESFKRSEPFTEGLMDRGVLVVPFVTDGNSPDLEFEETEEMKQLATRRKRLWQLTPVYI 267

Query: 267 SEWSK 271
           +EWS 
Sbjct: 268 TEWSN 272

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468602|ref|XP_004152010.1| PREDICTED: uncharacterized protein LOC101206246 [Cucumis sativus]

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 146/206 (70%), Positives = 175/206 (84%), Gaps = 2/206 (0%)

Query: 65  SNITCSATDRSDPEISSAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALA 124
           +N  CSA D+  PEISS A+IR+EVLSPFRSVRMFFYL F+ASG+LGGLIA TQL+GALA
Sbjct: 71  ANFICSAADK--PEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALA 128

Query: 125 NPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEKK 184
           N +RA +VP+IL+GL +D  AV+LFAFLY REN AKNAQLARLSREESLSNLKLRVD+ K
Sbjct: 129 NSSRADEVPDILEGLGVDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNK 188

Query: 185 IISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEE 244
           +I ++ LRGIARLVIC+GP S+I+E+FK SEPFTE LLERGVLVV   TD    +FEF++
Sbjct: 189 VIPISILRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDD 248

Query: 245 SEEMKEFTRKRKRLWQLTPVYVSEWS 270
            EE+K+ T KRKRLW+LTPVY++EWS
Sbjct: 249 REEVKDITTKRKRLWRLTPVYMTEWS 274

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560289|ref|XP_002521162.1| conserved hypothetical protein [Ricinus communis] gi|223539731|gb|EEF41313.1| conserved hypothetical protein [Ricinus communis]

 Score =  286 bits (732), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 161/209 (77%), Positives = 184/209 (88%), Gaps = 2/209 (0%)

Query: 65  SNITCSATDRSDP--EISSAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGA 122
           S+I CSA ++  P  +ISS A+IR+EVLSPFRSVRMFFYLAF+ASG LG LIA TQLI A
Sbjct: 60  SSIACSAANKPSPPTDISSTAKIRSEVLSPFRSVRMFFYLAFIASGGLGALIATTQLIAA 119

Query: 123 LANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDE 182
           LANPARAA+VPEILKGL ID+ AVS+FAFLY REN AK AQ+ARLSREESLSNLKLRVD+
Sbjct: 120 LANPARAAEVPEILKGLGIDIGAVSIFAFLYYRENNAKQAQVARLSREESLSNLKLRVDD 179

Query: 183 KKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEF 242
           KKIIS+++LRGIARLVIC+GP SY++ESF+ SEPFT+SLL+RGVLVV F TDGN P+FEF
Sbjct: 180 KKIISISSLRGIARLVICAGPGSYVLESFRLSEPFTQSLLDRGVLVVPFATDGNFPNFEF 239

Query: 243 EESEEMKEFTRKRKRLWQLTPVYVSEWSK 271
           EESEEMKE T KRKRLWQL P +VSEWSK
Sbjct: 240 EESEEMKEITSKRKRLWQLNPTFVSEWSK 268

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803184|ref|XP_002869476.1| hypothetical protein ARALYDRAFT_913640 [Arabidopsis lyrata subsp. lyrata] gi|297315312|gb|EFH45735.1| hypothetical protein ARALYDRAFT_913640 [Arabidopsis lyrata subsp. lyrata]

 Score =  283 bits (723), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 148/249 (59%), Positives = 188/249 (75%), Gaps = 12/249 (4%)

Query: 25  YHASRFCRQILNKYRSRTTPGLSISLPLHSTWTAKRSPLCSNITCSATDRSDPEISSAAR 84
           Y   RF R   ++ R   +P L+I        T K  PL  N  C A D    EIS+ AR
Sbjct: 28  YSPRRFSRHN-HRERLDFSPRLTI--------TGKHQPLSFNTVCFAADEPS-EISADAR 77

Query: 85  IRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVS 144
           IR+EVLSPFRSVRMFFYLAF+ASGSLGGLIA ++LIGALANPAR+ +V EI+KGL ID+ 
Sbjct: 78  IRSEVLSPFRSVRMFFYLAFIASGSLGGLIATSRLIGALANPARSGEVLEIVKGLGIDIG 137

Query: 145 AVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDE-KKIISVNNLRGIARLVICSGP 203
           A SLFAFLY  ENK KNAQ+ARLSREE+L+ LK+RV+E  K+ISV +LRGIARLVIC+GP
Sbjct: 138 AASLFAFLYFNENKTKNAQMARLSREENLAKLKMRVEENNKVISVGDLRGIARLVICAGP 197

Query: 204 ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEM-KEFTRKRKRLWQLT 262
           A +I E+F RS+ FT+ L+ERGV+VV++ TDGN P  EF+E++ + +E +++RKRLW++T
Sbjct: 198 AEFIEEAFNRSKEFTQGLVERGVVVVAYATDGNSPVLEFDEADIVDEEISQRRKRLWRVT 257

Query: 263 PVYVSEWSK 271
           PV+V EW K
Sbjct: 258 PVFVPEWEK 266

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18417257|ref|NP_567817.1| uncharacterized protein [Arabidopsis thaliana] gi|332660136|gb|AEE85536.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 138/219 (63%), Positives = 177/219 (80%), Gaps = 3/219 (1%)

Query: 55  TWTAKRSPLCSNITCSATDRSDPEISSAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLI 114
           T T K+ PL  N  C A D    EIS+ ARIR+EVLSPFRSVRMFFYLAF+ASGSLGGLI
Sbjct: 68  TITRKQQPLSFNTVCFAADEPS-EISADARIRSEVLSPFRSVRMFFYLAFIASGSLGGLI 126

Query: 115 AITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLS 174
           A ++LIGALANPAR+ +V EI+KGL +D+ A SLFAFLY  ENK KNAQ+ARLSREE+L 
Sbjct: 127 ATSRLIGALANPARSGEVLEIVKGLGVDIGAASLFAFLYFNENKTKNAQMARLSREENLG 186

Query: 175 NLKLRVDE-KKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTT 233
            LK+RV+E  K+ISV +LRG+ARLVIC+GPA +I E+FKRS+ +T+ L+ERGV+VV++ T
Sbjct: 187 KLKMRVEENNKVISVGDLRGVARLVICAGPAEFIEEAFKRSKEYTQGLVERGVVVVAYAT 246

Query: 234 DGNIPSFEFEESE-EMKEFTRKRKRLWQLTPVYVSEWSK 271
           DGN P  EF+E++   +E +++RK+LW++TPV+V EW K
Sbjct: 247 DGNSPVLEFDETDIADEEMSQRRKKLWRVTPVFVPEWEK 285

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4218124|emb|CAA22978.1| hypothetical protein [Arabidopsis thaliana] gi|7269729|emb|CAB81462.1| hypothetical protein [Arabidopsis thaliana] gi|21593096|gb|AAM65045.1| unknown [Arabidopsis thaliana]

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 138/219 (63%), Positives = 177/219 (80%), Gaps = 3/219 (1%)

Query: 55  TWTAKRSPLCSNITCSATDRSDPEISSAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLI 114
           T T K+ PL  N  C A D    EIS+ ARIR+EVLSPFRSVRMFFYLAF+ASGSLGGLI
Sbjct: 52  TITRKQQPLSFNTVCFAADEPS-EISADARIRSEVLSPFRSVRMFFYLAFIASGSLGGLI 110

Query: 115 AITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLS 174
           A ++LIGALANPAR+ +V EI+KGL +D+ A SLFAFLY  ENK KNAQ+ARLSREE+L 
Sbjct: 111 ATSRLIGALANPARSGEVLEIVKGLGVDIGAASLFAFLYFNENKTKNAQMARLSREENLG 170

Query: 175 NLKLRVDE-KKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTT 233
            LK+RV+E  K+ISV +LRG+ARLVIC+GPA +I E+FKRS+ +T+ L+ERGV+VV++ T
Sbjct: 171 KLKMRVEENNKVISVGDLRGVARLVICAGPAEFIEEAFKRSKEYTQGLVERGVVVVAYAT 230

Query: 234 DGNIPSFEFEESE-EMKEFTRKRKRLWQLTPVYVSEWSK 271
           DGN P  EF+E++   +E +++RK+LW++TPV+V EW K
Sbjct: 231 DGNSPVLEFDETDIADEEMSQRRKKLWRVTPVFVPEWEK 269

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
TAIR|locus:2117803	347	AT4G28740 "AT4G28740" [Arabido	0.797	0.622	0.616	1.7e-66
TAIR|locus:2024720	453	LPA1 "LOW PSII ACCUMULATION1"	0.538	0.322	0.301	9.7e-17

TAIR|locus:2117803 AT4G28740 "AT4G28740" [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 135/219 (61%), Positives = 171/219 (78%)

Query:    55 TWTAKRSPLCSNITCSATDRSDPEISSAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLI 114
             T T K+ PL  N  C A D    EIS+ ARIR+EVLSPFRSVRMFFYLAF+ASGSLGGLI
Sbjct:    68 TITRKQQPLSFNTVCFAADEPS-EISADARIRSEVLSPFRSVRMFFYLAFIASGSLGGLI 126

Query:   115 AITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLS 174
             A ++LIGALANPAR+ +V EI+KGL +D+ A SLFAFLY  ENK KNAQ+ARLSREE+L 
Sbjct:   127 ATSRLIGALANPARSGEVLEIVKGLGVDIGAASLFAFLYFNENKTKNAQMARLSREENLG 186

Query:   175 NLKLRVDEK-KIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTT 233
              LK+RV+E  K+ISV +LRG+ARLVIC+GPA +I E+FKRS+ +T+ L+ERGV+VV++ T
Sbjct:   187 KLKMRVEENNKVISVGDLRGVARLVICAGPAEFIEEAFKRSKEYTQGLVERGVVVVAYAT 246

Query:   234 DGNIPXXXXXXXXXM-KEFTRKRKRLWQLTPVYVSEWSK 271
             DGN P           +E +++RK+LW++TPV+V EW K
Sbjct:   247 DGNSPVLEFDETDIADEEMSQRRKKLWRVTPVFVPEWEK 285

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TAIR|locus:2024720 LPA1 "LOW PSII ACCUMULATION1" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 9.7e-17, P = 9.7e-17
 Identities = 44/146 (30%), Positives = 82/146 (56%)

Query:    84 RIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDV 143
             ++ +EV +PFR VR FFY AF A+  +     + +L+ A+     A ++ E     +I++
Sbjct:   187 KLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINI 246

Query:   144 SAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGP 203
               + +   L+  ENK +  Q+ +++R+E+LS L LR+   +++ +  LR   R VI +G 
Sbjct:   247 GGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGK 306

Query:   204 ASYIMESFKRSEPFTESLLERGVLVV 229
                +  + ++++ F   LL RGVL+V
Sbjct:   307 KETVTLAMQKADRFRTELLRRGVLLV 332


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.390    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      271       262   0.00091  114 3  11 22  0.43    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  188 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.35u 0.10s 22.45t   Elapsed:  00:00:07
  Total cpu time:  22.35u 0.10s 22.45t   Elapsed:  00:00:07
  Start:  Thu May  9 18:01:12 2013   End:  Thu May  9 18:01:19 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010270 "photosystem II oxygen evolving complex assembly" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XIV.128.1 hypothetical protein (300 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	271
PLN03098	453	PLN03098, LPA1, LOW PSII ACCUMULATION1; Provisiona	2e-26
pfam11998	75	pfam11998, DUF3493, Protein of unknown function (D	4e-19

>gnl|CDD|215573 PLN03098, LPA1, LOW PSII ACCUMULATION1; Provisional

 Score =  106 bits (266), Expect = 2e-26
 Identities = 48/143 (33%), Positives = 84/143 (58%)

Query: 87  NEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAV 146
           +EV +PFR VR FFY+AF A+  +     + +LI A+     A DV E     +I++  +
Sbjct: 190 SEVQAPFRGVRKFFYVAFTAAAGISTFFTVPRLIRAIQGGDGAPDVLETAGNAAINIGGI 249

Query: 147 SLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASY 206
             F  L+  ENK +  Q+++++R+E+LS L +R+   +I+ +  LR I R VI +G    
Sbjct: 250 VAFVSLFLWENKKEEEQMSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTKES 309

Query: 207 IMESFKRSEPFTESLLERGVLVV 229
           +  + +++E +   LL+RGVL++
Sbjct: 310 VTLAMQKAERYRTELLKRGVLLI 332

Length = 453

>gnl|CDD|192909 pfam11998, DUF3493, Protein of unknown function (DUF3493)

 Score = 78.9 bits (195), Expect = 4e-19
 Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 7/76 (9%)

Query: 83  ARIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSID 142
           AR+R E  +PFR +R F YLAF AS  LG  I + +LI          D+ E L  L+I 
Sbjct: 7   ARLRAEAQAPFRGLRRFLYLAFAASAGLGLFIMLFRLIA-------GPDLLETLPNLAIQ 59

Query: 143 VSAVSLFAFLYSRENK 158
           + A++LF FL   E K
Sbjct: 60  IGALALFVFLLRWERK 75

This family of proteins is functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length. Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	271
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	100.0
PF11998	75	DUF3493: Protein of unknown function (DUF3493); In	99.96
PF06305	68	DUF1049: Protein of unknown function (DUF1049); In	86.87
PF13778	118	DUF4174: Domain of unknown function (DUF4174)	83.99

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=100.00  E-value=1.4e-60  Score=461.63  Aligned_cols=194  Identities=28%  Similarity=0.499  Sum_probs=180.2

Q ss_pred             ccchHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHhhhccchhHHHHHHHHHHHHHHh
Q 024205           78 EISSAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSREN  157 (271)
Q Consensus        78 ~~~~~~rLraEa~APFR~lR~Ffy~Af~ASA~IG~~i~l~rliaal~G~~~a~~L~e~l~NlaIqiGavalf~~L~~~E~  157 (271)
                      ....++|||+|+++|||++|+|||+||+|||+||+||+++|++++++|++++|+|+++++|||||+|+|++|+|||+||+
T Consensus       181 ~~~~~~kL~~E~~aPfR~~R~f~y~a~~asa~ig~~i~~~rl~~a~aG~~~ap~l~~~~~nlaI~igav~~f~~L~~~e~  260 (453)
T PLN03098        181 SFRRDLKLISEVQAPFRGVRKFFYVAFTAAAGISTFFTVPRLIRAIQGGDGAPDVLETAGNAAINIGGIVAFVSLFLWEN  260 (453)
T ss_pred             chhhHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHhHhhcccchHHHHHHHHHHHHHHHh
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhhhhhcccceeEecCCceeehhhhcCcceEEEEeCCHhHHHHHHhhchhhHHHHhhcCcEEEEEeeCCCC
Q 024205          158 KAKNAQLARLSREESLSNLKLRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNI  237 (271)
Q Consensus       158 k~~~~qlari~REe~L~rL~Vrl~~~r~v~L~~LRg~aRvVIvAG~~e~V~~al~~Ae~~~~~L~~rgVLVVPV~~dg~s  237 (271)
                      |++|+||+||+|||+||||+|+++++|+|+|+||||++|||||||++|||+++|+.||+|+++|.+||||||||+|+++.
T Consensus       261 k~~e~q~~ri~Ree~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~e~v~~al~~ae~~r~~L~~r~VlvVPv~~~~~~  340 (453)
T PLN03098        261 KKEEEQMSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTKESVTLAMQKAERYRTELLKRGVLLIPVVWGENK  340 (453)
T ss_pred             cccHHHHHHHHhhhhhccceEeccCCCEEeHHHhcCcceEEEEECCHHHHHHHHHHhHHHHHHHHHcCcEEEEEecCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             CCC----Cccc-------------------hHHHHHhhhhhccceeeeecccCccCC
Q 024205          238 PSF----EFEE-------------------SEEMKEFTRKRKRLWQLTPVYVSEWSK  271 (271)
Q Consensus       238 ~~~----~f~~-------------------~~~~~~~~~~~~rrw~a~Pv~~~eW~~  271 (271)
                      +..    .||.                   ++.+.+...++++||++|||+++||++
T Consensus       341 ~~~~~~~gfg~~s~~a~~~p~~~~~~~~~~~~~~~~~~~~~~kr~~a~pv~~~~W~~  397 (453)
T PLN03098        341 DPQPKKKGFGRSSKAAASLPSIGDDFEKRAQSAAAKSVLKGEKRFKAEVVSPAEWER  397 (453)
T ss_pred             ccccccccccccchhhhcCCCccchhhhhhHHHHHHHhhhcccceEEeecchHHHHH
Confidence            632    3551                   112444556788999999999999973

>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised

Probab=99.96  E-value=9.2e-30  Score=196.08  Aligned_cols=74  Identities=43%  Similarity=0.702  Sum_probs=72.3

Q ss_pred             ccchHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHhhhccchhHHHHHHHHHHHHHHh
Q 024205           78 EISSAARIRNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSREN  157 (271)
Q Consensus        78 ~~~~~~rLraEa~APFR~lR~Ffy~Af~ASA~IG~~i~l~rliaal~G~~~a~~L~e~l~NlaIqiGavalf~~L~~~E~  157 (271)
                      +|++++|||+|+++|||++|+|||+||+|||+||++|+++|+++       |++|+|+++||+||+|+|++|+|||+||+
T Consensus         2 ~~~~~~rLraE~~aPfR~lR~f~y~a~~aSa~iG~~i~~~rl~a-------~~~l~~~l~nlaI~igava~~~~L~~~d~   74 (75)
T PF11998_consen    2 DPEQYARLRAEAQAPFRGLRRFFYGAFGASAGIGLFIFLFRLIA-------GPDLNEALPNLAIQIGAVALFAFLFRWDR   74 (75)
T ss_pred             CHHHHHHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CccHHHHhhhHhHHHHHHHHHHHHHHHhc
Confidence            68899999999999999999999999999999999999999999       79999999999999999999999999998


Q ss_pred             h
Q 024205          158 K  158 (271)
Q Consensus       158 k  158 (271)
                      |
T Consensus        75 k   75 (75)
T PF11998_consen   75 K   75 (75)
T ss_pred             C
Confidence            6

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.

>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=86.87  E-value=2.9  Score=30.22  Aligned_cols=44  Identities=20%  Similarity=0.424  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHhhhccchhHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 024205           96 VRMFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSRE  170 (271)
Q Consensus        96 lR~Ffy~Af~ASA~IG~~i~l~rliaal~G~~~a~~L~e~l~NlaIqiGavalf~~L~~~E~k~~~~qlari~RE  170 (271)
                      +=..+.++|+.++.+|.+++++..+.                               .+++.++.+++++++.+|
T Consensus        20 l~l~il~~f~~G~llg~l~~~~~~~~-------------------------------~r~~~~~~~k~l~~le~e   63 (68)
T PF06305_consen   20 LGLLILIAFLLGALLGWLLSLPSRLR-------------------------------LRRRIRRLRKELKKLEKE   63 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHH
Confidence            33567777888888888888877777                               677788888888877655

>PF13778 DUF4174: Domain of unknown function (DUF4174)

Probab=83.99  E-value=3.7  Score=33.62  Aligned_cols=54  Identities=20%  Similarity=0.277  Sum_probs=39.2

Q ss_pred             ehhhhcCcceEEEEeCC---HhHHHHHHhhchhhHHHHhhcCcEEEEEeeCCCCCCC
Q 024205          187 SVNNLRGIARLVICSGP---ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSF  240 (271)
Q Consensus       187 ~L~~LRg~aRvVIvAG~---~e~V~~al~~Ae~~~~~L~~rgVLVVPV~~dg~s~~~  240 (271)
                      +|.+++...|++||..|   ..+...-++.-+.-+..|.+|+|+|+.+.-++.....
T Consensus         2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~   58 (118)
T PF13778_consen    2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPG   58 (118)
T ss_pred             ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcccccc
Confidence            58899999999999886   2233444444445678999999999999665555433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	271
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 5e-06
 Identities = 50/309 (16%), Positives = 89/309 (28%), Gaps = 104/309 (33%)

Query: 4   VLHFSYILGPVGSGR--------------------------GYCNCQ----YHASRFCRQ 33
           ++      G +GSG+                            CN          +   Q
Sbjct: 154 LID-----GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 34  ILNKYRSRTTPGLSISLPLHSTWTAKRSPLCSNITCSA----TDRSDPEISSA----ARI 85
           I   + SR+    +I L +HS     R  L S    +      +  + +  +A     +I
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 86  ----RNEVLSPFRSVRMFFYLAFVASGSLGGLIAITQLIGALANPA--RAADVP-EILKG 138
               R + ++ F S     +++         L    ++   L      R  D+P E+L  
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLD--HHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTT 325

Query: 139 LSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDEKKII--SVNNLRGIAR 196
                  +S+ A    R+  A       ++ +      KL      II  S+N L     
Sbjct: 326 NPR---RLSIIAESI-RDGLATWDNWKHVNCD------KL----TTIIESSLNVLE---- 367

Query: 197 LVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPS---------FEFEESEE 247
                 PA Y  + F R             L V F    +IP+             +   
Sbjct: 368 ------PAEY-RKMFDR-------------LSV-FPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 248 -MKEFTRKR 255
            + +  +  
Sbjct: 407 VVNKLHKYS 415

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00