Citrus Sinensis ID: 024214

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
MACNFHHLTQTIRLSFPPLHNFKVSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFLGL
ccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccEEEEcccccccccccccccccEEcccccccccccccHHHHHHHHHHHcccccccccEEEEEEccEEEEEEcHHHHHHHHccccEEEEEcccccccccEEEEccccccHHHHHHHHHHHHHHHHHcccccccccccccEEccccccEEEEEEcccccccccEEEEEEEEEEEEEcccEEEEEEccccccccccccHHHHHcccccccccccHHcccc
ccccccccEEEEEEccccccccEEcHHHcccccccccccEccccccccccccHHHcccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHcccHcccccEEEEEccEEEEEccHHHHHHHHHcccEEEEEcccccccccEEEEccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHEHHHHHHHHHHcHEEEEEEEEEEEEcccccEEEEEcccccccccccccccEEcccccccHHHHHHHHcc
macnfhhltqtirlsfpplhnfkvsdaftnkslittfpvrfsvhssakltTSIRSLRVDTasisyrssctftwddvfrvsqpeyspddssdlrGYFEKIKicnrgsemqseffpfiiedqvagythnrfashlrkyddvfiysgnnggrfgshvklnsklktadERTRVVGEVIKCLaeeelipdiqnelypvastfgspiffsldraaapyfgikayavplngyvekdgqkflwigkrsqvkstypgmldilaggglvcnsnlsllflgl
macnfhhltqtirlsfpplhNFKVSDAFTNKSLITTFpvrfsvhssaklttsirslrvdtasisyrssctftwddvfrvsqpeyspddssdlrGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNnggrfgshvklnsklktadertRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFLGL
MACNFHHLTQTIRLSFPPLHNFKVSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFLGL
**CNFHHLTQTIRLSFPPLHNFKVSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVS***********LRGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL**
********TQTIRLSFPPLHN************ITTFPVRF******************************TW*********************YFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFLGL
MACNFHHLTQTIRLSFPPLHNFKVSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFLGL
**C*FHHLTQTIRLSFPPLHNFKVSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDTA****RSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFLGL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MACNFHHLTQTIRLSFPPLHNFKVSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFLGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query271 2.2.26 [Sep-21-2011]
Q8VXZ0 374 Nudix hydrolase 20, chlor yes no 0.922 0.668 0.481 5e-62
P0C026 365 Nudix hydrolase 24, chlor no no 0.723 0.536 0.546 2e-60
P47173 342 Uncharacterized protein Y yes no 0.387 0.307 0.294 7e-05
>sp|Q8VXZ0|NUD20_ARATH Nudix hydrolase 20, chloroplastic OS=Arabidopsis thaliana GN=NUDT20 PE=2 SV=1 Back     alignment and function desciption
 Score =  238 bits (606), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 130/270 (48%), Positives = 166/270 (61%), Gaps = 20/270 (7%)

Query: 1   MACNFHHLTQTIRLSFPPLHNFKVSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDT 60
           MA  F  L  T+  S    H      A T + L    P+     SS+   + +R  R  +
Sbjct: 1   MASGFCSLALTVTTSLFSSH------AITRRVL----PI-LRWRSSSMSLSPLRHSRALS 49

Query: 61  ASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQ 120
           A+ +   S +FTWDDV    + EY   +SSDL G+FEKI  CNRGSE   EF PF+IE+Q
Sbjct: 50  AATTVPISSSFTWDDVIETGRAEY---NSSDLTGFFEKINRCNRGSEKLGEFIPFVIEEQ 106

Query: 121 VAGYTHNRFASHLRKYDDVFIYSGNNG--GRFGSHVKLNSKLKTADERTRVVGEVIKCLA 178
           + GY H RF  +LR++ D+F +S N     R   +V LN  L+  ++RTR V +VIK L 
Sbjct: 107 IVGYIHKRFTEYLREFHDIFTFSQNGSCPDRVDGYVTLNLMLQKPEDRTRAVADVIKILG 166

Query: 179 EEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGK 238
           ++ +IP I+NELYPV  +F +P+FFSL+RAAAPYFGIK Y V +NGYVE+DGQK LWIGK
Sbjct: 167 DKGIIPGIRNELYPVKPSFNAPVFFSLERAAAPYFGIKGYGVHMNGYVERDGQKLLWIGK 226

Query: 239 RSQVKSTYPGMLDILAGGGL----VCNSNL 264
           RS  KSTYPGMLD L  GGL     C  NL
Sbjct: 227 RSLSKSTYPGMLDHLVAGGLPHGISCGGNL 256
Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: -
>sp|P0C026|NUD24_ARATH Nudix hydrolase 24, chloroplastic OS=Arabidopsis thaliana GN=NUDT24 PE=2 SV=1 Back     alignment and function description
>sp|P47173|YJ9J_YEAST Uncharacterized protein YJR142W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YJR142W PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query271
255549044329 Nudix hydrolase 20, chloroplast precurso 0.878 0.723 0.566 1e-75
359484618356 PREDICTED: nudix hydrolase 20, chloropla 0.867 0.660 0.532 7e-68
359484616364 PREDICTED: nudix hydrolase 20, chloropla 0.867 0.645 0.532 8e-68
225445320364 PREDICTED: nudix hydrolase 20, chloropla 0.889 0.662 0.520 8e-68
297738863 392 unnamed protein product [Vitis vinifera] 0.867 0.599 0.536 1e-67
224119736367 predicted protein [Populus trichocarpa] 0.738 0.544 0.622 1e-67
224098093258 predicted protein [Populus trichocarpa] 0.715 0.751 0.610 8e-65
147791238 448 hypothetical protein VITISV_032861 [Viti 0.889 0.537 0.471 1e-63
449461965370 PREDICTED: nudix hydrolase 20, chloropla 0.859 0.629 0.507 9e-63
357500493 391 Nudix hydrolase [Medicago truncatula] gi 0.726 0.503 0.599 8e-62
>gi|255549044|ref|XP_002515578.1| Nudix hydrolase 20, chloroplast precursor, putative [Ricinus communis] gi|223545522|gb|EEF47027.1| Nudix hydrolase 20, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 149/263 (56%), Positives = 188/263 (71%), Gaps = 25/263 (9%)

Query: 1   MACNF----HHL-TQTIRLSFPPLHNFKVSDAFTNKSLITTFPVRFSVHSSAKLTTSIRS 55
           MAC+     HHL TQ+I  SFP L        F +KS I+  P + S  S   + ++ RS
Sbjct: 1   MACSIAHRHHHLFTQSIHFSFPSL--------FMSKSFISH-PSK-STRSFCPIKSTSRS 50

Query: 56  LRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPF 115
           + V + + S      FTWDDVFRVSQPEY P+DSSDL G+F KI++CNRGSE+QSEF  F
Sbjct: 51  MSVISGASS------FTWDDVFRVSQPEYVPNDSSDLSGFFHKIQLCNRGSELQSEFISF 104

Query: 116 IIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEVIK 175
           +IEDQ  GY HN F   LR++ DVF++  +N     S+V L+ +L+TA++RTR VG+VIK
Sbjct: 105 LIEDQFVGYIHNNFVEQLRRFKDVFVFLQSNH----SYVSLHERLQTAEDRTRAVGQVIK 160

Query: 176 CLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLW 235
           CL EE LIP I+NELYPV S+FGSP++FSL+RAAAPYFGIK Y + +NG+VE+DG+KFLW
Sbjct: 161 CLGEEGLIPGIRNELYPVVSSFGSPVYFSLERAAAPYFGIKVYGIHMNGFVERDGEKFLW 220

Query: 236 IGKRSQVKSTYPGMLDILAGGGL 258
           IGKRS VK TYPGMLD L  GGL
Sbjct: 221 IGKRSGVKPTYPGMLDHLVAGGL 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359484618|ref|XP_003633132.1| PREDICTED: nudix hydrolase 20, chloroplastic-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359484616|ref|XP_002281417.2| PREDICTED: nudix hydrolase 20, chloroplastic-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225445320|ref|XP_002281437.1| PREDICTED: nudix hydrolase 20, chloroplastic [Vitis vinifera] gi|297738865|emb|CBI28110.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297738863|emb|CBI28108.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224119736|ref|XP_002331148.1| predicted protein [Populus trichocarpa] gi|222873231|gb|EEF10362.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224098093|ref|XP_002334575.1| predicted protein [Populus trichocarpa] gi|222873209|gb|EEF10340.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147791238|emb|CAN70130.1| hypothetical protein VITISV_032861 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449461965|ref|XP_004148712.1| PREDICTED: nudix hydrolase 20, chloroplastic-like [Cucumis sativus] gi|449519376|ref|XP_004166711.1| PREDICTED: nudix hydrolase 20, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357500493|ref|XP_003620535.1| Nudix hydrolase [Medicago truncatula] gi|355495550|gb|AES76753.1| Nudix hydrolase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query271
TAIR|locus:2150240 374 NUDT20 "nudix hydrolase homolo 0.800 0.580 0.526 1.5e-58
TAIR|locus:2150260 365 NUDT24 "nudix hydrolase homolo 0.819 0.608 0.515 5.1e-58
FB|FBgn0039958 349 CG12567 [Drosophila melanogast 0.523 0.406 0.328 2.3e-16
ZFIN|ZDB-GENE-060503-173 297 si:dkey-6n6.2 "si:dkey-6n6.2" 0.560 0.511 0.310 9.5e-13
ASPGD|ASPL0000062708 319 AN0193 [Emericella nidulans (t 0.343 0.291 0.371 1.8e-10
UNIPROTKB|B3NKG4 2299 GG21418 "GG21418" [Drosophila 0.380 0.044 0.357 9.4e-09
UNIPROTKB|G4MSN7 341 MGG_07079 "Nudix hydrolase 20" 0.372 0.296 0.324 7.8e-08
CGD|CAL0005587 305 orf19.4112 [Candida albicans ( 0.383 0.340 0.315 4.5e-06
SGD|S000003903 342 YJR142W "Putative protein of u 0.387 0.307 0.303 8.2e-05
TAIR|locus:2150240 NUDT20 "nudix hydrolase homolog 20" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 119/226 (52%), Positives = 155/226 (68%)

Query:    45 SSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNR 104
             SS+   + +R  R  +A+ +   S +FTWDDV    + EY+   SSDL G+FEKI  CNR
Sbjct:    34 SSSMSLSPLRHSRALSAATTVPISSSFTWDDVIETGRAEYN---SSDLTGFFEKINRCNR 90

Query:   105 GSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNG--GRFGSHVKLNSKLKT 162
             GSE   EF PF+IE+Q+ GY H RF  +LR++ D+F +S N     R   +V LN  L+ 
Sbjct:    91 GSEKLGEFIPFVIEEQIVGYIHKRFTEYLREFHDIFTFSQNGSCPDRVDGYVTLNLMLQK 150

Query:   163 ADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPL 222
              ++RTR V +VIK L ++ +IP I+NELYPV  +F +P+FFSL+RAAAPYFGIK Y V +
Sbjct:   151 PEDRTRAVADVIKILGDKGIIPGIRNELYPVKPSFNAPVFFSLERAAAPYFGIKGYGVHM 210

Query:   223 NGYVEKDGQKFLWIGKRSQVKSTYPGMLD-ILAGG---GLVCNSNL 264
             NGYVE+DGQK LWIGKRS  KSTYPGMLD ++AGG   G+ C  NL
Sbjct:   211 NGYVERDGQKLLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGGNL 256
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016787 "hydrolase activity" evidence=IEA;ISS
TAIR|locus:2150260 NUDT24 "nudix hydrolase homolog 24" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0039958 CG12567 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-173 si:dkey-6n6.2 "si:dkey-6n6.2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ASPGD|ASPL0000062708 AN0193 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|B3NKG4 GG21418 "GG21418" [Drosophila erecta (taxid:7220)] Back     alignment and assigned GO terms
UNIPROTKB|G4MSN7 MGG_07079 "Nudix hydrolase 20" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
CGD|CAL0005587 orf19.4112 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
SGD|S000003903 YJR142W "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016787001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (364 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query271
PLN02839 372 PLN02839, PLN02839, nudix hydrolase 7e-85
cd03676180 cd03676, Nudix_hydrolase_3, Members of the Nudix h 4e-26
>gnl|CDD|178432 PLN02839, PLN02839, nudix hydrolase Back     alignment and domain information 
 Score =  258 bits (659), Expect = 7e-85
 Identities = 126/247 (51%), Positives = 159/247 (64%), Gaps = 10/247 (4%)

Query: 24  VSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVSQPE 83
           V+  F++ +LI T   R S  S + L  S       T  IS     +FTWDDV    + E
Sbjct: 12  VTSLFSSHALIPTLRWRSSSMSRSPLRHSRAVSAATTVPIS----SSFTWDDVIETGRAE 67

Query: 84  YSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYS 143
           Y P +SSDL G+ EK+  CNRGSE   EF PF+IE+Q+ GY H  F  +LR++ D+F +S
Sbjct: 68  YVPQNSSDLTGFLEKVDRCNRGSEKLGEFIPFVIEEQIVGYIHKGFTEYLREFHDIFTFS 127

Query: 144 --GNNGGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPI 201
             G+   R   HV LN  L+  ++RTR V +VIK L ++ +IP I+NELYPV  +F +P+
Sbjct: 128 QNGSCPDRVDGHVTLNLMLQKPEDRTRAVADVIKILGDKGIIPGIRNELYPVKPSFNAPV 187

Query: 202 FFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGL--- 258
           FFSL+RAAAPYFGIK Y V +NGYVE+DGQKFLWIGKRS  KSTYPGMLD L  GGL   
Sbjct: 188 FFSLERAAAPYFGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHG 247

Query: 259 -VCNSNL 264
             C  NL
Sbjct: 248 ISCGENL 254

Length = 372
>gnl|CDD|239648 cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 271
PLN02839 372 nudix hydrolase 100.0
KOG4313 306 consensus Thiamine pyrophosphokinase [Nucleotide t 100.0
cd03676180 Nudix_hydrolase_3 Members of the Nudix hydrolase s 99.86
PLN02791 770 Nudix hydrolase homolog 99.09
cd02885165 IPP_Isomerase Isopentenyl diphosphate (IPP) isomer 98.97
PLN02552 247 isopentenyl-diphosphate delta-isomerase 98.96
PRK03759184 isopentenyl-diphosphate delta-isomerase; Provision 98.79
cd04692144 Nudix_Hydrolase_33 Members of the Nudix hydrolase 98.69
TIGR02150158 IPP_isom_1 isopentenyl-diphosphate delta-isomerase 98.68
PRK15393180 NUDIX hydrolase YfcD; Provisional 98.66
cd04697126 Nudix_Hydrolase_38 Members of the Nudix hydrolase 97.67
COG1443 185 Idi Isopentenyldiphosphate isomerase [Lipid metabo 97.67
cd04693127 Nudix_Hydrolase_34 Members of the Nudix hydrolase 97.55
PRK15472141 nucleoside triphosphatase NudI; Provisional 97.01
cd04682122 Nudix_Hydrolase_23 Members of the Nudix hydrolase 96.77
cd03426 157 CoAse Coenzyme A pyrophosphatase (CoAse), a member 96.76
cd04664129 Nudix_Hydrolase_7 Members of the Nudix hydrolase s 95.11
cd04694143 Nudix_Hydrolase_35 Members of the Nudix hydrolase 94.98
cd04691117 Nudix_Hydrolase_32 Members of the Nudix hydrolase 94.81
PF00293134 NUDIX: NUDIX domain; InterPro: IPR000086 The gener 93.93
cd03425124 MutT_pyrophosphohydrolase The MutT pyrophosphohydr 93.85
PRK10776129 nucleoside triphosphate pyrophosphohydrolase; Prov 92.8
cd04699129 Nudix_Hydrolase_39 Members of the Nudix hydrolase 92.35
cd04683120 Nudix_Hydrolase_24 Members of the Nudix hydrolase 91.39
cd03427137 MTH1 MutT homolog-1 (MTH1) is a member of the Nudi 89.8
cd04681130 Nudix_Hydrolase_22 Members of the Nudix hydrolase 89.44
cd04684128 Nudix_Hydrolase_25 Contains a crystal structure of 89.26
KOG0142 225 consensus Isopentenyl pyrophosphate:dimethylallyl 89.17
cd02883123 Nudix_Hydrolase Nudix hydrolase is a superfamily o 87.26
cd04673122 Nudix_Hydrolase_15 Members of the Nudix hydrolase 86.97
cd04678129 Nudix_Hydrolase_19 Members of the Nudix hydrolase 86.49
PRK10546135 pyrimidine (deoxy)nucleoside triphosphate pyrophos 85.91
TIGR00586128 mutt mutator mutT protein. All proteins in this fa 85.58
cd04696125 Nudix_Hydrolase_37 Members of the Nudix hydrolase 83.05
cd03671147 Ap4A_hydrolase_plant_like Diadenosine tetraphospha 81.73
cd03673131 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy 81.38
cd04695131 Nudix_Hydrolase_36 Members of the Nudix hydrolase 81.22
cd04685133 Nudix_Hydrolase_26 Members of the Nudix hydrolase 81.04
PRK09438148 nudB dihydroneopterin triphosphate pyrophosphatase 80.47
>PLN02839 nudix hydrolase Back     alignment and domain information 
Probab=100.00  E-value=5e-64  Score=477.35  Aligned_cols=230  Identities=51%  Similarity=0.902  Sum_probs=205.8

Q ss_pred             ecceeeeeeccccccceeeeeeeecc---ccCccccccccccccccccCCCCCCCCccchHHHHHHHHHhcCCCCCCCCe
Q 024214           36 TFPVRFSVHSSAKLTTSIRSLRVDTA---SISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEF  112 (271)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~I~~CN~~~~~~~~~  112 (271)
                      ++|+ |...|   ++.+-.|++.+++   ..+.++++|||||||+|++++||++++++++++|+++|++||++.++++.+
T Consensus        21 ~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cn~~~~~~~~~   96 (372)
T PLN02839         21 LIPT-LRWRS---SSMSRSPLRHSRAVSAATTVPISSSFTWDDVIETGRAEYVPQNSSDLTGFLEKVDRCNRGSEKLGEF   96 (372)
T ss_pred             ccee-eEeec---ccccCCCCccccceeeEEeecccccccHHHHHhhcccccCccccchhhhhHHHHHHhhccccccccc
Confidence            4777 77777   3444445555444   344788899999999999999999999999999999999999997778999


Q ss_pred             eeEEECCEEEEeecHHHHHHhhcCCCeeEEeCCCC--CcccceEEEccCCCCHHHHHHHHHHHHHHHHHcCCCCcccccc
Q 024214          113 FPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNG--GRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNEL  190 (271)
Q Consensus       113 ~PF~i~g~~VGyI~p~v~~~L~~~~~vF~v~~~~~--~~~g~~V~L~p~l~t~eeRT~al~~v~~~Lr~~g~l~GWRnE~  190 (271)
                      .||+++|++||||+|.++++|.+|+++|.+..++.  +....+|+|++.+.++++||+++++++++||++|+++|||||+
T Consensus        97 ~Pf~v~gq~VG~I~~~~~~~L~~~~~vF~~~~~~~~~~~~~~~V~L~~~~~t~~~Rt~al~~v~~~lr~~g~~~gWRnE~  176 (372)
T PLN02839         97 IPFVIEEQIVGYIHKGFTEYLREFHDIFTFSQNGSCPDRVDGHVTLNLMLQKPEDRTRAVADVIKILGDKGIIPGIRNEL  176 (372)
T ss_pred             cCeEECCEEEEEECHHHHHHHhhCccceeeccccccccccCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCCCCcccCc
Confidence            99999999999999999999999999999864321  1223579999999999999999999999999999999999999


Q ss_pred             eecccCCCCCeeEeeecccCCcCCceeeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhhc
Q 024214          191 YPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLFL  269 (271)
Q Consensus       191 y~V~~~~~~~~l~~iERaA~~lfGi~t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~~  269 (271)
                      |+|+..+++++++.|||+|+++|||++||||||||++++|+++|||+|||++|+||||||||+|||||.+||++.+.++
T Consensus       177 y~V~~~~~~~~l~~iERaA~~lfGi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etli  255 (372)
T PLN02839        177 YPVKPSFNAPVFFSLERAAAPYFGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLV  255 (372)
T ss_pred             cccccCCCCcceEEEeeccccccCceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHH
Confidence            9999988889999999999999999999999999999888899999999999999999999999999999999887654

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>PLN02791 Nudix hydrolase homolog Back     alignment and domain information
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway Back     alignment and domain information
>PLN02552 isopentenyl-diphosphate delta-isomerase Back     alignment and domain information
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional Back     alignment and domain information
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1 Back     alignment and domain information
>PRK15393 NUDIX hydrolase YfcD; Provisional Back     alignment and domain information
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism] Back     alignment and domain information
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>PRK15472 nucleoside triphosphatase NudI; Provisional Back     alignment and domain information
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes Back     alignment and domain information
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family [] Back     alignment and domain information
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi) Back     alignment and domain information
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional Back     alignment and domain information
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily Back     alignment and domain information
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function Back     alignment and domain information
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional Back     alignment and domain information
>TIGR00586 mutt mutator mutT protein Back     alignment and domain information
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily Back     alignment and domain information
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily Back     alignment and domain information
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query271
3dup_A 300 Crystal Structure Of MuttNUDIX FAMILY HYDROLASE FRO 3e-24
>pdb|3DUP|A Chain A, Crystal Structure Of MuttNUDIX FAMILY HYDROLASE FROM RHODOSPIRILLUM Rubrum Atcc 11170 Length = 300 Back     alignment and structure 
Iteration: 1

 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 89/170 (52%), Gaps = 9/170 (5%)
Query: 95  YFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHV 154
           + + ++ CN  +   S F  F+IE +  G+     A  L+ +  VF  + +        V
Sbjct: 5   FLKHVQDCN--THDLSNFVRFVIEGRRVGWVRKALAQRLKAHGRVFDVTRDA-------V 55
Query: 155 KLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFG 214
            L++ L+T   RTR V +V+  LA+E ++P  + ELY V  ++G P    LDRA  P FG
Sbjct: 56  LLSASLRTPQSRTRAVADVVDRLADEGVVPAPRGELYRVNQSWGEPTLXLLDRAVVPTFG 115
Query: 215 IKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNL 264
           ++AY V LNGYV       LWIG+RS  KS  PG LD    GG   + +L
Sbjct: 116 VRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNXVAGGQPADLSL 165

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query271
3dup_A 300 MUTT/nudix family protein; nudix superfamily hydro 7e-41
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} Length = 300 Back     alignment and structure
 Score =  142 bits (358), Expect = 7e-41
 Identities = 60/164 (36%), Positives = 86/164 (52%), Gaps = 9/164 (5%)

Query: 95  YFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHV 154
           + + ++ CN      S F  F+IE +  G+     A  L+ +  VF  + +        V
Sbjct: 5   FLKHVQDCNT--HDLSNFVRFVIEGRRVGWVRKALAQRLKAHGRVFDVTRD-------AV 55

Query: 155 KLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFG 214
            L++ L+T   RTR V +V+  LA+E ++P  + ELY V  ++G P    LDRA  P FG
Sbjct: 56  LLSASLRTPQSRTRAVADVVDRLADEGVVPAPRGELYRVNQSWGEPTLMLLDRAVVPTFG 115

Query: 215 IKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGL 258
           ++AY V LNGYV       LWIG+RS  KS  PG LD +  GG 
Sbjct: 116 VRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQ 159
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query271
3dup_A 300 MUTT/nudix family protein; nudix superfamily hydro 100.0
2pny_A 246 Isopentenyl-diphosphate delta-isomerase 2; caroten 98.94
2dho_A 235 Isopentenyl-diphosphate delta-isomerase 1; alpha/b 98.89
1q27_A171 Putative nudix hydrolase DR0079; radiation resista 98.54
1hzt_A 190 Isopentenyl diphosphate delta-isomerase; dimethyla 98.34
2fkb_A180 Putative nudix hydrolase YFCD; putative protein, M 98.32
1nqz_A 194 COA pyrophosphatase (MUTT/nudix family protein); D 94.18
3oga_A165 Nucleoside triphosphatase NUDI; salmonella enteric 93.88
1mut_A129 MUTT, nucleoside triphosphate pyrophosphohydrolase 93.74
3i9x_A187 MUTT/nudix family protein; structural genomics, hy 93.09
1sjy_A159 MUTT/nudix family protein; nudix fold, alpha-beta- 92.63
3grn_A153 MUTT related protein; structural genomics, hydrola 92.05
2rrk_A140 ORF135, CTP pyrophosphohydrolase; NMR {Escherichia 91.56
3son_A149 Hypothetical nudix hydrolase; structural genomics, 91.26
3exq_A 161 Nudix family hydrolase; protein structure initiati 91.19
3r03_A144 Nudix hydrolase; structural genomics, PSI2, protei 90.81
2b06_A155 MUTT/nudix family protein; structural genomics, P 90.78
1ktg_A138 Diadenosine tetraphosphate hydrolase; nudix, AMP, 90.54
3gwy_A140 Putative CTP pyrophosphohydrolase; structural geno 90.11
3hhj_A158 Mutator MUTT protein; niaid, ssgcid, decode, UW, S 89.82
2o1c_A150 DATP pyrophosphohydrolase; nudix NTP hydrolase NTP 89.43
1f3y_A 165 Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase 86.19
3ees_A153 Probable pyrophosphohydrolase; nudix, RNA pyrophos 85.94
3q93_A 176 7,8-dihydro-8-oxoguanine triphosphatase; structura 85.32
3gg6_A156 Nudix motif 18, nucleoside diphosphate-linked moie 85.26
3gz5_A 240 MUTT/nudix family protein; DNA binding protein, nu 83.08
3e57_A211 Uncharacterized protein TM1382; structural genomic 83.05
1v8y_A170 ADP-ribose pyrophosphatase; nudix motif, loop-heli 82.98
4dyw_A157 MUTT/nudix family protein; structural genomics, ni 82.6
2fb1_A 226 Conserved hypothetical protein; structural genomic 82.53
2fml_A 273 MUTT/nudix family protein; structural genomics, PS 82.2
2b0v_A153 Nudix hydrolase; structural genomics, PSI, protein 81.96
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} Back     alignment and structure
Probab=100.00  E-value=2.2e-45  Score=340.81  Aligned_cols=168  Identities=36%  Similarity=0.649  Sum_probs=159.8

Q ss_pred             HHHHHHHHHhcCCCCCCCCeeeEEECCEEEEeecHHHHHHhhcCCCeeEEeCCCCCcccceEEEccCCCCHHHHHHHHHH
Q 024214           93 RGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGE  172 (271)
Q Consensus        93 ~~fl~~I~~CN~~~~~~~~~~PF~i~g~~VGyI~p~v~~~L~~~~~vF~v~~~~~~~~g~~V~L~p~l~t~eeRT~al~~  172 (271)
                      |+|+++|++||+|  +++.|+||+++|++||||+|.+++.|.++|++|.++.       +.|+|.+.+.++++||+++++
T Consensus         3 m~~l~~i~~~~~~--~~~~~~~f~~~g~~~G~i~~~~~~~l~~~~~~~~~~~-------~~v~l~~~~~~~~~rt~~~~~   73 (300)
T 3dup_A            3 LSFLKHVQDCNTH--DLSNFVRFVIEGRRVGWVRKALAQRLKAHGRVFDVTR-------DAVLLSASLRTPQSRTRAVAD   73 (300)
T ss_dssp             CCHHHHHHHTTCC--CCTTEEEEEETTEEEEEEEHHHHHHHTTCTTTEEECS-------SEEEECTTCCSHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCC--ChhhcEEEEECCEEEEeECHHHHHHHhcCCCceEeeC-------CEEEEecCCCCHHHHHHHHHH
Confidence            6899999999999  5788999999999999999999999999999998864       579999999999999999999


Q ss_pred             HHHHHHHcCCCCcccccceecccCCCCCeeEeeecccCCcCCceeeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchh
Q 024214          173 VIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDI  252 (271)
Q Consensus       173 v~~~Lr~~g~l~GWRnE~y~V~~~~~~~~l~~iERaA~~lfGi~t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~  252 (271)
                      ++++|+++|+++|||||+|+||+.+|+++++.|||+++++||+.+||||+|+|+.++++++|||+|||.+|++|||+|||
T Consensus        74 ~~~~~~~~g~~~gwr~E~~~V~~~~~~~~~~~~eR~~~~~~G~~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~  153 (300)
T 3dup_A           74 VVDRLADEGVVPAPRGELYRVNQSWGEPTLMLLDRAVVPTFGVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDN  153 (300)
T ss_dssp             HHHHHHHTTSSCCCCSCEEEECSSTTSCCCEEEEGGGTGGGTCCEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEE
T ss_pred             HHHHHHHcCCCCccccccEEeecCCCCeeeEEEEhhhccccceEEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCcccc
Confidence            99999999999999999999999998889999999999999999999999999988777899999999999999999999


Q ss_pred             hhcCCCCCCcchhHhhc
Q 024214          253 LAGGGLVCNSNLSLLFL  269 (271)
Q Consensus       253 ~VAGGi~agE~l~~~~~  269 (271)
                      +||||+.+||++.++.+
T Consensus       154 svaG~i~~GEs~~eaA~  170 (300)
T 3dup_A          154 MVAGGQPADLSLRQNLI  170 (300)
T ss_dssp             SEEEECCTTSCHHHHHH
T ss_pred             ccccCCCCCCCHHHHHH
Confidence            99999999999988753
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens} Back     alignment and structure
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A* Back     alignment and structure
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Back     alignment and structure
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Back     alignment and structure
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Back     alignment and structure
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Back     alignment and structure
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Back     alignment and structure
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Back     alignment and structure
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Back     alignment and structure
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Back     alignment and structure
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Back     alignment and structure
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli} Back     alignment and structure
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Back     alignment and structure
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Back     alignment and structure
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0 Back     alignment and structure
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Back     alignment and structure
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Back     alignment and structure
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0 Back     alignment and structure
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae} Back     alignment and structure
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Back     alignment and structure
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* Back     alignment and structure
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* Back     alignment and structure
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Back     alignment and structure
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Back     alignment and structure
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* Back     alignment and structure
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima} Back     alignment and structure
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Back     alignment and structure
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Back     alignment and structure
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6 Back     alignment and structure
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Back     alignment and structure
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query271
d2o5fa1162 Hypothetical protein DR0079 {Deinococcus radiodura 99.3
d2fkba1161 Hypothetical protein YfcD {Escherichia coli [TaxId 99.21
d1hzta_153 Isopentenyl diphosphate isomerase {Escherichia col 98.54
d1puna_129 Nucleoside triphosphate pyrophosphorylase (MutT) { 94.45
d1sjya_158 Hypothetical protein DR1025 {Deinococcus radiodura 91.3
d1ryaa_160 GDP-mannose mannosyl hydrolase NudD {Escherichia c 90.29
d2fb1a2147 Hypothetical protein BT0354, N-terminal domain {Ba 89.61
d2b06a1155 Hypothetical protein SP1235 (spr1115) {Streptococc 86.35
d1ktga_137 Diadenosine tetraphosphate hydrolase (Ap4A hydrola 83.4
d1jkna_ 165 Diadenosine tetraphosphate hydrolase (Ap4A hydrola 82.39
>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.30  E-value=7.2e-13  Score=108.10  Aligned_cols=77  Identities=22%  Similarity=0.237  Sum_probs=62.0

Q ss_pred             cceecccCCCCCeeEeeecccCCcCCceeeeEeEEEEEeeCCeeEEEEeccCCCCCCCCCCchhhhcCCCCCCcchhHhh
Q 024214          189 ELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLVCNSNLSLLF  268 (271)
Q Consensus       189 E~y~V~~~~~~~~l~~iERaA~~lfGi~t~GVHlngyv~~~g~~~lWv~rRS~~K~tyPG~LD~~VAGGi~agE~l~~~~  268 (271)
                      |.++|+|.++ +++..++|..+...|+.+++||+-.+.   ++.++||+||+.+|..|||+||+.++|++.+||++.++.
T Consensus         1 E~~d~vd~~~-~~~g~~~r~~~~~~~~~~~~v~~~v~~---~~g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs~~eaa   76 (162)
T d2o5fa1           1 ERLDLVNERD-EVVGQILRTDPALRWERVRVVNAFLRN---SQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAF   76 (162)
T ss_dssp             CEEEEECTTS-CEEEEEETTCTTCCGGGSEEEEEEEEC---TTSCEEEEEC-------CCSBCCSEEEECBTTCCHHHHH
T ss_pred             CcEEEECCCC-CEEEEEEHHHHhhCCCeEEEEEEEEEc---CCCCEEEEEeccCccccccccccccCCcccCCCChhhhh
Confidence            7899999986 588999999999999999999986654   334799999999999999999999999999999999875


Q ss_pred             c
Q 024214          269 L  269 (271)
Q Consensus       269 ~  269 (271)
                      .
T Consensus        77 ~   77 (162)
T d2o5fa1          77 R   77 (162)
T ss_dssp             H
T ss_pred             h
Confidence            3
>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]} Back     information, alignment and structure