Citrus Sinensis ID: 024229

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Protein Sequence
MDTAYHWPQKSQKSYYNLLYCFCNPSPICKGIGFVTPMEAGSNPTLERRPKPQRERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVGGGSRKNKRSSSSSGLSMNLTDLNTPCFPDQSAVSSDHNPNSTIHHEYHRDLKLAYPPNYTESKISSSSSASSSEFNSFMGMPAAASNSNANATCQSGNILLQEPKKTLDFSSSDGFENNGARLWFPLQDIKPEISNTTTDRFELNRGQAQAESTGYWTRLLGGGSW
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccHHHHHHccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccHHccccccccccccccccccccccccccEEccccccccc
Coil and Loop (DISEMBL)
mdtayhwpqksqkSYYNLLYcfcnpspickgigfvtpmeagsnptlerrpkpqrervlncprcnstdtkfcyynnysfsqprhfcKTCRrywtaggslrnvpvgggsrknkrsssssglsmnltdlntpcfpdqsavssdhnpnstihheyhrdlklayppnyteskisssssasssefnsfmgmpaaasnsnanatcqsgnillqepkktldfsssdgfenngarlwfplqdikpeisntttdrfelnrgqaqaeSTGYWTRLLGGGSW
Flexible Loop (DISEMBL)
mdtayhwpqksQKSYYNLLYCFCNPSPICKGIGFVTPMEagsnptlerrpkpqrervlncprcnstdtKFCYYNNYSFSQPRHFCKTCRRYWTAGgslrnvpvgggsrknkrsssssglsmNLTDLNTPCFPDQSAVSSDHNPNSTIHHEYHRDLKLAYPPNYTESKISSSSSASSSEFNSFMGMPAAASNSNANATCQSGNILLQEPKKTLDFSSSDGFENNGARLWFPLQDIKPEISNTTTDRfelnrgqaqaestgywtrllgggsw
Low Complexity Region (SEG)
MDTAYHWPQKSQKSYYNLLYCFCNPSPICKGIGFVTPMEAGSNPTLERRPKPQRERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVgggsrknkrsssssglsmnlTDLNTPCFPDQSAVSSDHNPNSTIHHEYHRDLKLAYPPNYTEskisssssasssefnsFMGMPaaasnsnanaTCQSGNILLQEPKKTLDFSSSDGFENNGARLWFPLQDIKPEISNTTTDRFELNRGQAQAESTGYWTRLLGGGSW
Disordered region (IsUnstruct)
************KSYYNLLYCFCNPSPICKGIGFVTP*******************VLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRN***************************************************************************************************************************GARLWFPLQDIKP**********************GYWTRLL*****
Disordered Region (DISOPRED)
************************************************************PRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRN****************************************************************************************************************************ARLWFPLQDIK*************************WTRLLGGG**
Disordered Region (DISEMBL)
**********SQKSYYNLLYCFCNPSPICKGIGFVTPMEAGSNPTLERRPKPQRERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPV****************SMNLTDLNTPCFPDQSAVSSDHNPNSTIHHEYHRDLKLAYPPNY****************NSFMGMPAAASNSNANATCQSGNILLQEPKKTLDFSSSDGFENNGARLWFPLQDIKPEISNTTTDRFELNRGQAQAESTGYWTRLLGGGSW
Disordered Region (DISPRO)
*****************************************************RERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVG************************************************RDLKLAYPPNYTESKISSSSSASSSEFNSFMGMPAAASNSNANATCQSGNILLQEPKKTLDFSSSDGFENNGARLWFPLQDIKPE*****************************GGSW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTAYHWPQKSQKSYYNLLYCFCNPSPICKGIGFVTPMEAGSNPTLERRPKPQRERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVGGGSRKNKRSSSSSGLSMNLTDLNTPCFPDQSAVSSDHNPNSTIHHEYHRDLKLAYPPNYTESKISSSSSASSSEFNSFMGMPAAASNSNANATCQSGNILLQEPKKTLDFSSSDGFENNGARLWFPLQDIKPEISNTTTDRFELNRGQAQAESTGYWTRLLGGGSW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	270	2.2.26 [Sep-21-2011]
Q8LAP8	342	Dof zinc finger protein D	yes	no	0.8	0.631	0.347	1e-31
Q43385	296	Dof zinc finger protein D	no	no	0.8	0.729	0.383	1e-28
Q84TE9	257	Dof zinc finger protein D	no	no	0.6	0.630	0.468	2e-26
O24463	328	Dof zinc finger protein P	N/A	no	0.251	0.207	0.720	2e-26
Q9M2U1	323	Dof zinc finger protein D	no	no	0.292	0.244	0.682	6e-26
Q84JQ8	352	Dof zinc finger protein D	no	no	0.225	0.173	0.737	6e-25
Q9M161	294	Dof zinc finger protein D	no	no	0.759	0.697	0.350	9e-25
Q9M1E6	245	Dof zinc finger protein D	no	no	0.270	0.297	0.675	4e-24
O82155	194	Dof zinc finger protein D	no	no	0.344	0.479	0.562	8e-24
Q8LE43	288	Dof zinc finger protein D	no	no	0.218	0.204	0.813	1e-23

>sp|Q8LAP8|DOF46_ARATH Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2

 Score =  136 bits (343), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 143/308 (46%), Gaps = 92/308 (29%)

Query: 47  ERRPKPQRERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVGGG 106
           ER+ +P++++ +NCPRCNST+TKFCYYNNYS +QPR+FCK CRRYWT GGSLRN+PVGGG
Sbjct: 42  ERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGG 101

Query: 107 SRKNKRSSSSSGLSMNLTDLNTPCFPDQSAVSSDHN-------------PNSTIHHEYHR 153
           SRKNKRS SSS    N    +T   P      SDH+              N        +
Sbjct: 102 SRKNKRSHSSSSDISNNHSDSTQ--PATKKHLSDHHHHLMSMSQQGLTGQNPKFLETTQQ 159

Query: 154 DLKLAYPP------NYTE------------------SKISSSSSASSSEFN--------- 180
           DL L + P      N+T+                    +SS S+ ++S  +         
Sbjct: 160 DLNLGFSPHGMIRTNFTDLIHNIGNNTNKSNNNNNPLIVSSCSAMATSSLDLIRNNSNNG 219

Query: 181 -----SFMGMPAAASNSNANATCQSGNILLQEPKK-----------TLDFSSSDGF---- 220
                SFMG P        N    SG   +Q+  K           +LD   ++GF    
Sbjct: 220 NSSNSSFMGFPV------HNQDPASGGFSMQDHYKPCNTNTTLLGFSLDHHHNNGFHGGF 273

Query: 221 ----------ENNGARLWFPLQDIK-PEISNTTTDRFELNRGQ-------AQAESTGYWT 262
                     ++   R  FP +D+K P  S++ T   ++N  Q       A A S GYWT
Sbjct: 274 QGGEEGGEGGDDVNGRHLFPFEDLKLPVSSSSATINVDINEHQKRGSGSDAAATSGGYWT 333

Query: 263 RLLGGGSW 270
            +L GGSW
Sbjct: 334 GMLSGGSW 341

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.
Arabidopsis thaliana (taxid: 3702)

>sp|Q43385|DOF37_ARATH Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/245 (38%), Positives = 129/245 (52%), Gaps = 29/245 (11%)

Query: 45  TLERRPKPQRERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVG 104
           T+E R    +E+V NCPRCNST+TKFCYYNNYS +QPR+FCK CRRYWT GGSLRNVPVG
Sbjct: 62  TMETRKARPQEKV-NCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVG 120

Query: 105 GGSRKNKRSSS--SSGLSMNLTDLNTPC-FPDQSAVSSDHNPN----STIHHEYHRDLKL 157
           G SRKNKRSS+  +S  +  L DLN P  F  Q    S+ + N      +   +H  L+L
Sbjct: 121 GSSRKNKRSSTPLASPSNPKLPDLNPPILFSSQIPNKSNKDLNLLSFPVMQDHHHHALEL 180

Query: 158 AYPPNYTESKISS----SSSASSSEFNSFMGMPAA----ASNSNANATCQSGNILLQEPK 209
                 +   +++        S+S   S +G P       SN+N + +      +     
Sbjct: 181 LRSNGVSSRGMNTFLPGQMMDSNSVLYSSLGFPTMPDYKQSNNNLSFSIDHHQGIGHNTI 240

Query: 210 KTLDFSSSDGFENNGA-RLWFPLQDIKPEISNTTTDRFELNRGQAQAESTGYWTRLL--- 265
            +   +  +  + NGA R+ FP  D+K E+S+TT ++   N          YW  +    
Sbjct: 241 NSNQRAQDNNDDMNGASRVLFPFSDMK-ELSSTTQEKSHGN--------NTYWNGMFSNT 291

Query: 266 GGGSW 270
           GG SW
Sbjct: 292 GGSSW 296

Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84TE9|DOF53_ARATH Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3 PE=2 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/175 (46%), Positives = 99/175 (56%), Gaps = 13/175 (7%)

Query: 45  TLERRPKPQRERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVG 104
           T   RP+P  E  L CPRC+ST+TKFCYYNNYS +QPR+FCK+CRRYWT GG+LRN+PVG
Sbjct: 43  TAVTRPQPP-ELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVG 101

Query: 105 GGSRKNKRSSSSSGLSMNLTDLNTPCFPDQSAVSSDHNPNSTIHHEYHRDLKLAYPPNYT 164
           GG RKNKRS+SS+  S+  T    P   D   V S    N   ++E H DL LA+     
Sbjct: 102 GGCRKNKRSTSSAARSLRTTP--EPASHD-GKVFSAAGFNGYSNNE-HIDLSLAFALLNK 157

Query: 165 ESKISSSSSASSSEFNS-----FMGMPAAASNSNANATCQSGN--ILLQEPKKTL 212
           +   SSS     SE  S       GM    S    NAT   GN    L +P + L
Sbjct: 158 QHPGSSSQLGFHSELGSSHQSDMEGM-FGTSQQKENATYAFGNGSSGLGDPSRVL 211

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|O24463|PBF_MAIZE Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 57/68 (83%)

Query: 47  ERRPKPQRERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVGGG 106
           ER+P+PQ    L CPRC+S +TKFCYYNNYS SQPR+FCK CRRYWT GG+LRNVP+GGG
Sbjct: 49  ERKPRPQLPEALKCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTHGGTLRNVPIGGG 108

Query: 107 SRKNKRSS 114
            RKNK +S
Sbjct: 109 CRKNKHAS 116

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.

Zea mays (taxid: 4577)

>sp|Q9M2U1|DOF36_ARATH Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6 PE=1 SV=2

 Score =  117 bits (294), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 56/82 (68%), Positives = 63/82 (76%), Gaps = 3/82 (3%)

Query: 39  EAGSNPTLERR---PKPQRERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAG 95
           +A  N  +ER      P  E  LNCPRC+ST+TKFCY+NNYS +QPRHFCKTCRRYWT G
Sbjct: 54  QARVNSMVERARIAKVPLPEAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRG 113

Query: 96  GSLRNVPVGGGSRKNKRSSSSS 117
           GSLRNVPVGGG R+NKRS S S
Sbjct: 114 GSLRNVPVGGGFRRNKRSKSRS 135

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JQ8|DOF18_ARATH Dof zinc finger protein DOF1.8 OS=Arabidopsis thaliana GN=DOF1.8 PE=2 SV=1

 Score =  114 bits (286), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 45/61 (73%), Positives = 56/61 (91%)

Query: 46  LERRPKPQRERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVGG 105
           +ER+ +P++++ LNCPRCNS +TKFCYYNNYS +QPR+FCK CRRYWTAGGSLRN+PVGG
Sbjct: 37  VERKARPEKDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNIPVGG 96

Query: 106 G 106
           G
Sbjct: 97  G 97

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M161|DOF41_ARATH Dof zinc finger protein DOF4.1 OS=Arabidopsis thaliana GN=DOF4.1 PE=2 SV=2

 Score =  114 bits (284), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 87/248 (35%), Positives = 123/248 (49%), Gaps = 43/248 (17%)

Query: 45  TLERRPKPQRERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVG 104
           T+  RP+  R    NCPRCNS++TKFCYYNNYS +QPR+ CK+CRRYWT GGSLRNVPVG
Sbjct: 59  TMSTRPQEPR----NCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVG 114

Query: 105 GGSRKNKR----SSSSSGLSMNLTDLNTPCFPDQSAVSSDHNPNSTIHHEYHRDLKLAYP 160
           GGSRKNK+    +SS+S  + NL DLN P        SS  + N +  H+ + DL L++ 
Sbjct: 115 GGSRKNKKLPFPNSSTSSSTKNLPDLNPPFV----FTSSASSSNPSKTHQNNNDLSLSFS 170

Query: 161 PNYTESKISSSSSASSSE---------FNSFMGMPAAASNSNANATCQSGNILLQEPKKT 211
               + +        S +         F + MGM       +            + PKK 
Sbjct: 171 SPMQDKRAQGHYGHFSEQVVTGGQNCLFQAPMGMIQFRQEYDH-----------EHPKKN 219

Query: 212 LDFS---------SSDGFENN--GARLWFPLQDIKPEISNTTTDRFELNRGQAQAESTGY 260
           L FS         + D F  N  G+++ +P  D +    +      + N+ +    S   
Sbjct: 220 LGFSLDRNEEEIGNHDNFVVNEEGSKMMYPYGDHEDRQQHHHVRHDDGNKKREGGSSNEL 279

Query: 261 WTRLLGGG 268
           W+ ++ GG
Sbjct: 280 WSGIILGG 287

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1E6|DOF32_ARATH Dof zinc finger protein DOF3.2 OS=Arabidopsis thaliana GN=DOF3.2 PE=2 SV=1

 Score =  112 bits (279), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 60/74 (81%), Gaps = 1/74 (1%)

Query: 44  PTLERRPKPQRERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPV 103
           P    RP P  E+ L CPRC+ST+TKFCYYNNYS SQPR+FCK+CRRYWT GG LRN+P+
Sbjct: 27  PLSATRPAPP-EQSLRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGILRNIPI 85

Query: 104 GGGSRKNKRSSSSS 117
           GG  RK+KRSSS++
Sbjct: 86  GGAYRKHKRSSSAT 99

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|O82155|DOF17_ARATH Dof zinc finger protein DOF1.7 OS=Arabidopsis thaliana GN=DOF1.7 PE=2 SV=1

 Score =  110 bits (276), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 54/96 (56%), Positives = 66/96 (68%), Gaps = 3/96 (3%)

Query: 47  ERRPKPQRERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVGGG 106
           + +P+   +  L CPRC+S +TKFCYYNNY+ SQPRHFCK CRRYWT GG+LRN+PVGGG
Sbjct: 22  QNQPELPEQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGG 81

Query: 107 SRK-NKRSSSSSGLSMNLTDLNTPCFPDQSAVSSDH 141
           +RK NKRS SS   S NL +      PD     S+ 
Sbjct: 82  TRKSNKRSGSSP--SSNLKNQTVAEKPDHHGSGSEE 115

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LE43|DOF21_ARATH Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana GN=DOF2.1 PE=2 SV=2

 Score =  110 bits (274), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/59 (81%), Positives = 54/59 (91%)

Query: 59  NCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVGGGSRKNKRSSSSS 117
           NCPRC S +TKFCYYNNYS SQPR+FCK+CRRYWT GG+LRNVPVGGG R+NKRSSSS+
Sbjct: 49  NCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSSSA 107

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
302143937	245	unnamed protein product [Vitis vinifera]	0.840	0.926	0.519	2e-50
225455314	287	PREDICTED: dof zinc finger protein DOF4.	0.825	0.777	0.453	6e-48
212725382	255	Dof1 [Populus tomentosa]	0.866	0.917	0.453	4e-47
224135095	255	predicted protein [Populus trichocarpa]	0.866	0.917	0.450	5e-47
212725384	255	Dof1 [Populus tomentosa]	0.866	0.917	0.443	6e-45
255549188	298	zinc finger protein, putative [Ricinus c	0.907	0.822	0.414	3e-44
224058056	247	f-box family protein [Populus trichocarp	0.877	0.959	0.432	1e-43
224118334	297	f-box family protein [Populus trichocarp	0.874	0.794	0.404	3e-43
3341468	262	Dof zinc finger protein [Nicotiana tabac	0.862	0.889	0.446	4e-42
356535286	269	PREDICTED: dof zinc finger protein DOF4.	0.896	0.899	0.427	9e-42

>gi|302143937|emb|CBI23042.3| unnamed protein product [Vitis vinifera]

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 131/252 (51%), Positives = 158/252 (62%), Gaps = 25/252 (9%)

Query: 30  KGIGFVTPMEAGSNPTLERRPKPQRERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCR 89
           +GIG V PME+ S P  ERR +PQ+++ LNCPRCNST+TKFCYYNNYS SQPR+FCKTCR
Sbjct: 8   QGIGVVKPMES-SGPVAERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCR 66

Query: 90  RYWTAGGSLRNVPVGGGSRKNKRSSSSSGLSMNLTDLNTPCFPDQ--SAVSSDHNPNSTI 147
           RYWT GGSLRNVPVGGGSRKNKRS+SSS  S +         PD   +   S  + N  I
Sbjct: 67  RYWTEGGSLRNVPVGGGSRKNKRSTSSSSSSSSPASSKK-LLPDHLITRFPSSASQNPKI 125

Query: 148 HHEYHRDLKLAYPPNYTESKISSSSSASSSEFNSFMGMPAAASNSNANATCQSGNILLQE 207
           H    +DL LA+PP   E   +S S  +     SFM M  + SNS       S    LQE
Sbjct: 126 HE--GQDLNLAFPPP-PEDYNNSISEFADLGLGSFMPMSVSDSNS-----IYSSGFPLQE 177

Query: 208 PKKTLDFS---------SSDGFENNGARLWFPLQDIKPEISNTTTDRFELNRGQAQAEST 258
            K TL+FS         S  G + +GARL FPL+D+K ++SNTT   FE +RG  Q +S 
Sbjct: 178 FKPTLNFSLDGFQSGYGSLQGVQESGARLLFPLEDLK-QVSNTT--EFEQSRG-VQGDSA 233

Query: 259 GYWTRLLGGGSW 270
           GYW  +LGGGSW
Sbjct: 234 GYWNGMLGGGSW 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455314|ref|XP_002275610.1| PREDICTED: dof zinc finger protein DOF4.6-like [Vitis vinifera]

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 135/298 (45%), Positives = 164/298 (55%), Gaps = 75/298 (25%)

Query: 30  KGIGFVTPMEAGSNPTLERRPKPQRERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCR 89
           +GIG V PME+ S P  ERR +PQ+++ LNCPRCNST+TKFCYYNNYS SQPR+FCKTCR
Sbjct: 8   QGIGVVKPMES-SGPVAERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCR 66

Query: 90  RYWTAGGSLRNVPVGGGSRKNKRSSSSSG-----------LSMNLTDLNTPCFPDQSAVS 138
           RYWT GGSLRNVPVGGGSRKNKRS+SSS            L  +L     P FP     S
Sbjct: 67  RYWTEGGSLRNVPVGGGSRKNKRSTSSSSSSSSPASSKKLLPDHLITSTPPGFPS----S 122

Query: 139 SDHNPNSTIHHEYHRDLKLAYPP---NYTES----------------------------- 166
           +  NP   IH    +DL LA+PP   +Y  S                             
Sbjct: 123 ASQNPK--IHE--GQDLNLAFPPPPEDYNNSISEFADLSYNGDSKPHLQNPTPSSSSSHH 178

Query: 167 -----KISSSSSASSSEFNSFMGMPAAASNSNANATCQSGNILLQEPKKTLDFS------ 215
                ++  S+  +S    SFM M  + SNS       S    LQE K TL+FS      
Sbjct: 179 HLSAMELLKSTGIASRGLGSFMPMSVSDSNS-----IYSSGFPLQEFKPTLNFSLDGFQS 233

Query: 216 ---SSDGFENNGARLWFPLQDIKPEISNTTTDRFELNRGQAQAESTGYWTRLLGGGSW 270
              S  G + +GARL FPL+D+K ++SNTT   FE +RG  Q +S GYW  +LGGGSW
Sbjct: 234 GYGSLQGVQESGARLLFPLEDLK-QVSNTT--EFEQSRG-VQGDSAGYWNGMLGGGSW 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212725382|gb|ACJ38096.1| Dof1 [Populus tomentosa]

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 132/291 (45%), Positives = 167/291 (57%), Gaps = 57/291 (19%)

Query: 1   MDTAYHWPQKSQKSYYNLLYCFCNPSPICKGIGFVTPMEAGSNPTLERRPKPQRERVLNC 60
           MDT+  WPQ                     GIG V P+E      LERR +PQ+E+ LNC
Sbjct: 1   MDTSTQWPQ---------------------GIGVVKPVEGPE--MLERRARPQKEQALNC 37

Query: 61  PRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVGGGSRKNKRSSSSSGLS 120
           PRC ST+TKFCYYNNYS SQPR+FCKTCRRYWT GGSLRNVPVGGGSRKNKRSSS+   S
Sbjct: 38  PRCTSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSSNPSSS 97

Query: 121 MNLT-------DLNTPCFPDQSAVSSDHNPNSTIHHEYHRDLKLAYPPNYTES-KISSSS 172
                      DL  P F  QSA  +D NP   IH     DL LAYPP++  + ++  SS
Sbjct: 98  AAAASEKKFPLDLTQPNF-HQSA--TDQNPK--IHE--GPDLNLAYPPSHISAMELLKSS 150

Query: 173 SASSSEFNSFMGMPAAASNSNANATCQSGNILLQEPKKTLDFSSSDGFEN---------- 222
             +   F++FM +PAA+ ++N  +T  S    LQE K +    S +GFE+          
Sbjct: 151 GMNPRGFSAFMSIPAASDSNNMFSTGFS----LQEFKPSTQNFSFEGFESGYSNIQGVHE 206

Query: 223 --NGARLWFPLQDIKPEI-SNTTTDRFELNRGQAQAESTGYWTRLLGGGSW 270
             + ARL FP++D+K ++ SN+  +R    RGQ    + GYW  +LGG SW
Sbjct: 207 TGSSARLLFPIEDLKQQVPSNSEFERINA-RGQGDG-APGYWNGMLGGESW 255

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135095|ref|XP_002321982.1| predicted protein [Populus trichocarpa] gi|222868978|gb|EEF06109.1| predicted protein [Populus trichocarpa]

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 131/291 (45%), Positives = 166/291 (57%), Gaps = 57/291 (19%)

Query: 1   MDTAYHWPQKSQKSYYNLLYCFCNPSPICKGIGFVTPMEAGSNPTLERRPKPQRERVLNC 60
           MDT+  WPQ                     GIG V P+E      LERR +PQ+E+ LNC
Sbjct: 1   MDTSTQWPQ---------------------GIGVVKPVEGPD--MLERRARPQKEQALNC 37

Query: 61  PRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVGGGSRKNKRSSSSSGLS 120
           PRC ST+TKFCYYNNYS SQPR+FCKTCRRYWT GGSLRNVPVGGGSRKNKRSSS+   S
Sbjct: 38  PRCTSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSSNPSSS 97

Query: 121 MNLT-------DLNTPCFPDQSAVSSDHNPNSTIHHEYHRDLKLAYPPNYTES-KISSSS 172
                      DL  P F  QSA  +D NP   IH     DL LAYPP++  + ++  SS
Sbjct: 98  AAAASEKKFPLDLTQPNF-HQSA--TDQNPK--IHQ--GPDLNLAYPPSHISAMELLKSS 150

Query: 173 SASSSEFNSFMGMPAAASNSNANATCQSGNILLQEPKKTLDFSSSDGFEN---------- 222
             +   F++FM +PAA+ ++N  +T       LQE K +    S +GFE+          
Sbjct: 151 GMNPRGFSAFMSIPAASDSNNMFST----GFPLQEFKPSTQNFSLEGFESGYSNIQAVHE 206

Query: 223 --NGARLWFPLQDIKPEI-SNTTTDRFELNRGQAQAESTGYWTRLLGGGSW 270
             + ARL FP++D+K ++ SN+  +R    RGQ    + GYW  +LGG SW
Sbjct: 207 TGSSARLLFPIEDLKQQVPSNSEFERINA-RGQGDG-APGYWNGMLGGESW 255

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212725384|gb|ACJ38097.1| Dof1 [Populus tomentosa]

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 129/291 (44%), Positives = 164/291 (56%), Gaps = 57/291 (19%)

Query: 1   MDTAYHWPQKSQKSYYNLLYCFCNPSPICKGIGFVTPMEAGSNPTLERRPKPQRERVLNC 60
           MDT+  WPQ                     GIG V  +E      LERR +PQ+ + LNC
Sbjct: 1   MDTSTQWPQ---------------------GIGVVKLVEGPE--MLERRARPQKGQALNC 37

Query: 61  PRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVGGGSRKNKRSSSSSGLS 120
           PRC ST+TKFCYYNNYS SQPR+FCKTCRRYWT GGSLRNVPVGGGSRKNKRSSS+   S
Sbjct: 38  PRCTSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSSNPSSS 97

Query: 121 MNLT-------DLNTPCFPDQSAVSSDHNPNSTIHHEYHRDLKLAYPPNYTES-KISSSS 172
                      DL  P F  QSA  +D NP   IH     DL LAYPP++  + ++  SS
Sbjct: 98  AAAASEKKFPLDLTQPNF-HQSA--TDQNPK--IHE--GPDLNLAYPPSHISAMELLKSS 150

Query: 173 SASSSEFNSFMGMPAAASNSNANATCQSGNILLQEPKKTLDFSSSDGFEN---------- 222
             +   F++FM +PAA+ ++N  +T       LQE K +    S +GFE+          
Sbjct: 151 GMNPRGFSAFMSIPAASDSNNMFST----GFPLQEFKPSTQNFSFEGFESGYSNIQGVHE 206

Query: 223 --NGARLWFPLQDIKPEI-SNTTTDRFELNRGQAQAESTGYWTRLLGGGSW 270
             + ARL FP++D+K ++ SN+  +R    RGQ    + GYW  +LGG SW
Sbjct: 207 TGSSARLLFPIEDLKQQVPSNSEFERINA-RGQGDG-APGYWNGMLGGESW 255

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549188|ref|XP_002515648.1| zinc finger protein, putative [Ricinus communis] gi|223545191|gb|EEF46700.1| zinc finger protein, putative [Ricinus communis]

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 131/316 (41%), Positives = 162/316 (51%), Gaps = 71/316 (22%)

Query: 1   MDTAYHWPQKSQKSYYNLLYCFCNPSPICKGIGFVTPME---AGSNPTLERR-PKPQRER 56
           MDT   WPQ                    +GIG   PME     S+  LERR  +PQ++ 
Sbjct: 1   MDTTAQWPQ-------------------FQGIGVGKPMENSRHNSSSGLERRSARPQKDH 41

Query: 57  VLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVGGGSRKNKRSSSS 116
            LNCPRCNST+TKFCYYNNYS SQPR+FCKTCRRYWT GGSLRNVPVGGGSRKNKRSS+S
Sbjct: 42  ALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSAS 101

Query: 117 SGLSMNLTDLNTPCFPDQSAVSSDHNPNSTIHHEYHRDLKLAYPPNYTESK--------- 167
           S  S  L  +N P    Q       NPN+ I   + +DL LAY P  TE+          
Sbjct: 102 SSSSKKLI-INPPDLTPQIGFLHHQNPNNNIKIHHGQDLNLAYAPPSTENHEYGNMSEFI 160

Query: 168 --------------------ISSSSSASSSEFNSFMGMPAAASNSNANA-TCQSGNILLQ 206
                               + +  S+       FM M    S+SN    +  S    L 
Sbjct: 161 DVTRSKTHFLNPSPAAMDQLLKTGMSSRGLMLGPFMSMQPLVSDSNTVVFSSSSAGFSLP 220

Query: 207 EPKKTLD-----FSSSDGFENN------GARLWFPLQDIKPEISNTTTDRF---ELNRGQ 252
           E K TL+     F+SS  + +N      GARL FP++D+K   +NT T  F   + NRGQ
Sbjct: 221 ELKPTLNFCLEGFNSSSEYGSNAHQGTAGARLLFPVEDLKQVPTNTNTIEFDDHQQNRGQ 280

Query: 253 AQAESTGYWTRLLGGG 268
              ++TG+W  +LGGG
Sbjct: 281 ---DTTGFWNGILGGG 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058056|ref|XP_002299441.1| f-box family protein [Populus trichocarpa] gi|222846699|gb|EEE84246.1| f-box family protein [Populus trichocarpa]

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/280 (43%), Positives = 153/280 (54%), Gaps = 43/280 (15%)

Query: 1   MDTAYHWPQKSQKSYYNLLYCFCNPSPICKGIGFVTPMEAGSNPTLERRPKPQRERVLNC 60
           MDTA  WPQ+                 + K I  +        P LER+ +PQ+E+ LNC
Sbjct: 1   MDTA-QWPQEI----------------VVKPIEEIVVNTCSKPPALERKVRPQKEQALNC 43

Query: 61  PRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVGGGSRKNKRSSSSSGLS 120
           PRCNST+TKFCYYNNYS +QPR+FCKTCRRYWT GGSLR++PVGGGSRKNKRSS+SS  S
Sbjct: 44  PRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRSIPVGGGSRKNKRSSASSSSS 103

Query: 121 M-NLTDLNTPCFPDQSAVSSDHNPNSTIHHEYHRDLKLAYPPNYTESKISSSSSASSSEF 179
              L DL +P  P  S  S++   N  IH    +DL LA+P       +   +  SS   
Sbjct: 104 SKKLPDLISP--PTLSQTSTE---NHKIHE--GQDLNLAFPSTQGIRTLELLTGISSRGL 156

Query: 180 NSFMGMPAAASNSNANATCQSGNILLQEPKKTLDFS---------SSDGFENNGARLWFP 230
           NSF  MP     S    T       LQ+ K TL FS            G      RL FP
Sbjct: 157 NSFP-MPVHQDPS----TLYPSGFPLQDFKPTLSFSLDGLGSGYGDLQGVHETNGRLLFP 211

Query: 231 LQDIKPEISNTTTDRFELNRGQAQAESTGYWTRLLGGGSW 270
            +D+K ++S+T     ++ + +   +STGYWT +LGGGSW
Sbjct: 212 FEDLKQQVSSTA----DIEQNKEHGDSTGYWTGMLGGGSW 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118334|ref|XP_002317793.1| f-box family protein [Populus trichocarpa] gi|222858466|gb|EEE96013.1| f-box family protein [Populus trichocarpa]

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 134/331 (40%), Positives = 163/331 (49%), Gaps = 95/331 (28%)

Query: 1   MDTAYHWPQKSQKSYYNLLYCFCNPSPICKGIGFVTPMEAGSNPTLERRPKPQRERVLNC 60
           MDTA  W Q                     GIG V PME      LERR + Q+++ LNC
Sbjct: 1   MDTATQWAQ---------------------GIGAVNPMEGSRPDVLERRARAQKDQALNC 39

Query: 61  PRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVGGGSRKNKRSSSSSGLS 120
           PRCNST+TKFCYYNNYS SQPR+FCKTCRRYWTAGGSLRNVPVGGGSRKNKRSSS++  S
Sbjct: 40  PRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTAGGSLRNVPVGGGSRKNKRSSSTASTS 99

Query: 121 MNLT--------DLNTPCFPDQSAVSSDHNPNSTIHHEYHRDLKLAYPPNY--------- 163
                       DL  P  P     S+  NP   IH    +DL LAYPP+          
Sbjct: 100 AAGAAASKKFPLDLTQPNLPH----SASQNPK--IHE--GQDLNLAYPPSADDYSNLSEF 151

Query: 164 ------TES--------------------------KISSSSSASSSEFNSFMGMPAAASN 191
                 TES                          +   S++ +S  F++FM +P     
Sbjct: 152 VEIPFDTESNKTHHQNPNPSSTSPSHHHHHHVSPMEFLKSTAMNSRGFSAFMSIPPL--- 208

Query: 192 SNANATCQSGNILLQEPKKTLDFS---SSDGFENN--------GARLWFPLQDIKPEISN 240
           S++N T  S    LQE K T +FS      G+ N          ARL FP++D+K ++ +
Sbjct: 209 SDSNNTMFSTGFPLQEFKSTQNFSLEGLESGYSNTQGVHETCGSARLLFPIEDLKQQVPS 268

Query: 241 TTTDRFELN-RGQAQAESTGYWTRLLGGGSW 270
            T   FE N R Q      GYW  +LGGGSW
Sbjct: 269 NT--EFEQNTREQRDNAPVGYWNGMLGGGSW 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3341468|emb|CAA08755.1| Dof zinc finger protein [Nicotiana tabacum]

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 133/298 (44%), Positives = 165/298 (55%), Gaps = 65/298 (21%)

Query: 1   MDTAYHWPQKSQKSYYNLLYCFCNPSPICKGIGFVTPMEAGSNPTLERRPKPQRERVLNC 60
           MDT+ HWPQ                     GIG V  +E       ER+P+PQ+E+ +NC
Sbjct: 1   MDTS-HWPQ---------------------GIGLVKAVEPSKPVPTERKPRPQKEQAINC 38

Query: 61  PRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVGGGSRKNKRSSSSSGLS 120
           PRCNST+TKFCYYNNYS SQPR+FCKTCRRYWT GGSLRNVPVGGGSRKNKRSSSSS  S
Sbjct: 39  PRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSSSSNNS 98

Query: 121 MNLTDLNTPCFPDQSAVSSDHNPNSTIHHEYHRDLKLAYPPNYTESKISSSSSASSSEFN 180
            + T  +    PD +  +S  NP   I +E H DL LA+ P         S++++ S  +
Sbjct: 99  SSSTSSSYKKIPDLTIPTSSQNP--KIINEPH-DLNLAFNP---------SATSNFSNIS 146

Query: 181 SFMGMPAAASNSNAN-------ATCQSGNIL----------LQEPKKTLDFSSSDGFENN 223
            FM +P    NS  +           S NI+          L + K TL+F S DGF+NN
Sbjct: 147 EFMALPLMNPNSTTSFMSSIMPQLSDSNNIMYSSSSTGLPNLHDLKPTLNF-SLDGFDNN 205

Query: 224 -----------GARLWFPLQDIKPEISNTTTDRF-ELNRGQAQAESTGYWTRLLGGGS 269
                      G +L+FPL D+K   +      F E NRGQA AES G+W  +LGGGS
Sbjct: 206 NGYGSLQGETAGXKLFFPLDDLKNVSTPNDDHEFDEQNRGQA-AESHGFWNGMLGGGS 262

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535286|ref|XP_003536179.1| PREDICTED: dof zinc finger protein DOF4.6 [Glycine max]

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 168/297 (56%), Gaps = 55/297 (18%)

Query: 1   MDTAYHWPQKSQKSYYNLLYCFCNPSPICKGIGFVTPMEAGSNPTLERRPKPQRERVLNC 60
           MDTA  WPQ+                PI   +   T     +  ++ER+P+PQ+E+ +NC
Sbjct: 1   MDTA-QWPQEMVVK------------PIEDIVVTNTTCTKAAVGSVERKPRPQKEQAINC 47

Query: 61  PRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVGGGSRKNKRSSSS---- 116
           PRC+S +TKFCYYNNYS +QPR+FCKTCRRYWT GG+LRN+PVGGGSRKNKRSS+S    
Sbjct: 48  PRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNIPVGGGSRKNKRSSASCSNN 107

Query: 117 ----------SGLSMNLTDLNTPCFPDQSAVSSDHNPNSTIHHEYHRDLKLAYPPNYTES 166
                       LS +L  + TP     +  +   N NS IH    +DL LA+P     S
Sbjct: 108 SHHNDNNSTNKKLSADL--VITPPTLSHTTQNPKSNDNSIIHQ--GQDLNLAFPSTTNLS 163

Query: 167 KIS----SSSSASSSEFNSFMGMPAAASNSNANATCQSGNILLQEPK-KTLDFSSSDGFE 221
            +      +SS+S+    SFM +P   SN N+  TC      LQ+ K  TL+F S DG  
Sbjct: 164 ALELLTGITSSSSTGLSTSFMPIP-VPSNPNSIYTC---GFPLQDFKPGTLNF-SLDGIG 218

Query: 222 N--------NGARLWFPLQDIKPEISNTTTDRFELNRGQAQAESTGYWTRLLGGGSW 270
                    +G RL FP +D+K ++S+TTT    +N+ Q Q +STGYWT +LGGGSW
Sbjct: 219 KGYTSLQNVHGGRLLFPFEDLK-QVSSTTT----MNQTQ-QGDSTGYWTGMLGGGSW 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
TAIR|locus:2134981	342	AT4G24060 [Arabidopsis thalian	0.359	0.283	0.519	2.4e-33
TAIR|locus:2039959	369	DAG2 "DOF AFFECTING GERMINATIO	0.203	0.149	0.771	2.2e-28
TAIR|locus:2079492	324	DAG1 "dof affecting germinatio	0.211	0.175	0.766	9.4e-27
TAIR|locus:2019499	352	AT1G64620 [Arabidopsis thalian	0.251	0.193	0.630	1.2e-26
TAIR|locus:2134658	294	AT4G00940 [Arabidopsis thalian	0.381	0.350	0.495	4e-26
TAIR|locus:2164860	457	CDF2 "cycling DOF factor 2" [A	0.251	0.148	0.573	2.1e-21
TAIR|locus:2121041	246	DOF4.7 "DNA binding with one f	0.207	0.227	0.696	3e-21
TAIR|locus:2144030	257	TMO6 "TARGET OF MONOPTEROS 6"	0.418	0.439	0.457	3.9e-21
TAIR|locus:2158078	225	AT5G66940 [Arabidopsis thalian	0.314	0.377	0.5	6.3e-21
TAIR|locus:2170753	372	HCA2 "HIGH CAMBIAL ACTIVITY2"	0.296	0.215	0.523	9.4e-21

TAIR|locus:2134981 AT4G24060 [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
 Identities = 54/104 (51%), Positives = 70/104 (67%)

Query:     1 MDTAYHWPQKSQ-KSYYNLLYCFCNPSPICKGIGFVTPMEAGSNPTLERRPKPQRERVLN 59
             MDTA  WPQ+   K    ++   C P P  + +    P   G     ER+ +P++++ +N
Sbjct:     1 MDTA-QWPQEIVVKPLEEIVTNTC-PKPQPQPLQPQQPPSVGG----ERKARPEKDQAVN 54

Query:    60 CPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPV 103
             CPRCNST+TKFCYYNNYS +QPR+FCK CRRYWT GGSLRN+PV
Sbjct:    55 CPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPV 98

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2039959 DAG2 "DOF AFFECTING GERMINATION 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 2.2e-28, Sum P(3) = 2.2e-28
 Identities = 44/57 (77%), Positives = 50/57 (87%)

Query:    47 ERRPKPQRERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPV 103
             ER+ +PQ +  LNCPRCNST+TKFCYYNNYS +QPR+FCK CRRYWT GGSLRNVPV
Sbjct:    71 ERKARPQEK--LNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPV 125

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009409 "response to cold" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2079492 DAG1 "dof affecting germination 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 9.4e-27, Sum P(2) = 9.4e-27
 Identities = 46/60 (76%), Positives = 53/60 (88%)

Query:    45 TLE-RRPKPQRERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPV 103
             T+E R+ +PQ E+V NCPRCNST+TKFCYYNNYS +QPR+FCK CRRYWT GGSLRNVPV
Sbjct:    62 TMETRKARPQ-EKV-NCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPV 119

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009845 "seed germination" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009639 "response to red or far red light" evidence=IMP

TAIR|locus:2019499 AT1G64620 [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
 Identities = 46/73 (63%), Positives = 59/73 (80%)

Query:    36 TPMEAGSNPT-----LERRPKPQRERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRR 90
             T ++  SNP      +ER+ +P++++ LNCPRCNS +TKFCYYNNYS +QPR+FCK CRR
Sbjct:    22 TCLKQQSNPPSPATPVERKARPEKDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRR 81

Query:    91 YWTAGGSLRNVPV 103
             YWTAGGSLRN+PV
Sbjct:    82 YWTAGGSLRNIPV 94

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2134658 AT4G00940 [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
 Identities = 56/113 (49%), Positives = 67/113 (59%)

Query:    51 KPQRERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVXXXXXXX 110
             +PQ  R  NCPRCNS++TKFCYYNNYS +QPR+ CK+CRRYWT GGSLRNVPV       
Sbjct:    63 RPQEPR--NCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKN 120

Query:   111 XXXXXXXXXXXXXT----DLNTPCFPDQSAVSSDHNPNSTIHHEYHRDLKLAY 159
                          T    DLN P     SA SS  NP+ T  H+ + DL L++
Sbjct:   121 KKLPFPNSSTSSSTKNLPDLNPPFVFTSSASSS--NPSKT--HQNNNDLSLSF 169

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2164860 CDF2 "cycling DOF factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
 Identities = 39/68 (57%), Positives = 51/68 (75%)

Query:    36 TPMEAGSNPTLERRPKPQRERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAG 95
             T  E+G     +     + +++L CPRCNS +TKFCYYNNY+ +QPRHFCK C+RYWTAG
Sbjct:   116 TNEESGGTACSQEGKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAG 175

Query:    96 GSLRNVPV 103
             G++RNVPV
Sbjct:   176 GTMRNVPV 183

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2121041 DOF4.7 "DNA binding with one finger 4.7" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 39/56 (69%), Positives = 46/56 (82%)

Query:    48 RRPKPQRERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPV 103
             + P P  + VL CPRC+S +TKFCYYNNYS SQPRH+CK CRRYWT GG+LRNVP+
Sbjct:    31 KEPSPATQPVLKCPRCDSVNTKFCYYNNYSLSQPRHYCKNCRRYWTRGGALRNVPI 86

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010227 "floral organ abscission" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2144030 TMO6 "TARGET OF MONOPTEROS 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 54/118 (45%), Positives = 65/118 (55%)

Query:    42 SNPTLERRPKPQRERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNV 101
             S  T   RP+P  E  L CPRC+ST+TKFCYYNNYS +QPR+FCK+CRRYWT GG+LRN+
Sbjct:    40 SPATAVTRPQPP-ELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNI 98

Query:   102 PVXXXXXXXXXXXXXXXXXXXXTDLNTPCFPDQSAVSSDHNPNSTIHHEYHRDLKLAY 159
             PV                    T    P   D   V S    N   ++E H DL LA+
Sbjct:    99 PVGGGCRKNKRSTSSAARSLRTTP--EPASHD-GKVFSAAGFNGYSNNE-HIDLSLAF 152

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0048364 "root development" evidence=IEP

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2158078 AT5G66940 [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 43/86 (50%), Positives = 56/86 (65%)

Query:    50 PKPQRERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVXXXXXX 109
             P  Q+E+ L+CPRC ST+TKFCYYNNY+FSQPRHFCK+CRRYWT GG+LR++PV      
Sbjct:    25 PTDQQEQ-LSCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGVSRK 83

Query:   110 XXXXXXXXXXXXXXTDLNTPCFPDQS 135
                           + + +  FP Q+
Sbjct:    84 SSKRSRTYSSAATTSVVGSRNFPLQA 109

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2170753 HCA2 "HIGH CAMBIAL ACTIVITY2" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 9.4e-21, P = 9.4e-21
 Identities = 45/86 (52%), Positives = 52/86 (60%)

Query:    18 LLYCFCNPSPICKGIGFVTPMEAGSNPTLERRPKPQRERVLNCPRCNSTDTKFCYYNNYS 77
             L  C   P      +     M+ G      RR +P  +    CPRC ST TKFCYYNNYS
Sbjct:    39 LAACSTRPQASAVAVAAAALMDGG------RRLRPPHDHPQKCPRCESTHTKFCYYNNYS 92

Query:    78 FSQPRHFCKTCRRYWTAGGSLRNVPV 103
              SQPR+FCKTCRRYWT GG+LRN+PV
Sbjct:    93 LSQPRYFCKTCRRYWTKGGTLRNIPV 118

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0010067 "procambium histogenesis" evidence=IMP

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037222001 SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (261 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	270
pfam02701	63	pfam02701, zf-Dof, Dof domain, zinc finger	2e-36

>gnl|CDD|111583 pfam02701, zf-Dof, Dof domain, zinc finger

 Score =  123 bits (310), Expect = 2e-36
 Identities = 47/63 (74%), Positives = 56/63 (88%)

Query: 53  QRERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVGGGSRKNKR 112
           + ++ L CPRC+S +TKFCYYNNY+ +QPR+FCK CRRYWTAGG+LRNVPVGGG RKNKR
Sbjct: 1   KPDKALKCPRCDSMNTKFCYYNNYNLNQPRYFCKNCRRYWTAGGALRNVPVGGGRRKNKR 60

Query: 113 SSS 115
           SSS
Sbjct: 61  SSS 63

The Dof domain is a zinc finger DNA-binding domain, that shows resemblance to the Cys2 zinc finger. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	270
PF02701	63	zf-Dof: Dof domain, zinc finger; InterPro: IPR0038	100.0
TIGR02159	146	PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subu	92.91
PF12760	46	Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int	91.08
PF03811	36	Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR0	91.0
COG3677	129	Transposase and inactivated derivatives [DNA repli	90.97
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	86.79
PF01096	39	TFIIS_C: Transcription factor S-II (TFIIS); InterP	85.09

>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=100.00  E-value=1.7e-37  Score=232.01  Aligned_cols=62  Identities=79%  Similarity=1.495  Sum_probs=59.4

Q ss_pred             cccccCCCCCCCCCcceeeecccCCCCCchhhhhcccccccCCccccccCCCCCCCCCCCCC
Q 024229           54 RERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVGGGSRKNKRSSS  115 (270)
Q Consensus        54 ~~~~~~CPRC~S~~TkfcyyNNy~~~QPR~fCk~CrRyWT~GGtlRnvPVGgG~RKnk~sss  115 (270)
                      +++.++||||+|.||||||||||+++||||||++|+||||+||+|||||||||+||+|+++|
T Consensus         2 ~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~~Ck~C~rywT~GG~lRnVPvggg~Rk~k~~~s   63 (63)
T PF02701_consen    2 PEQPLPCPRCDSTNTKFCYYNNYNLSQPRYFCKSCRRYWTHGGTLRNVPVGGGCRKNKRSSS   63 (63)
T ss_pred             CccCCCCCCcCCCCCEEEeecCCCCCCcchhhHHHHHHHHhcceecCCccCCCcccCCcCCC
Confidence            46679999999999999999999999999999999999999999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent

>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit

Probab=92.91  E-value=0.046  Score=46.73  Aligned_cols=33  Identities=27%  Similarity=0.704  Sum_probs=26.4

Q ss_pred             ccCCCCCCCCCcceeeecccC--CCCCchhhhhcccc
Q 024229           57 VLNCPRCNSTDTKFCYYNNYS--FSQPRHFCKTCRRY   91 (270)
Q Consensus        57 ~~~CPRC~S~~TkfcyyNNy~--~~QPR~fCk~CrRy   91 (270)
                      ...||||.|.+|+..  +.+-  .++.-|.|++|+.=
T Consensus       105 ~~~cp~c~s~~t~~~--s~fg~t~cka~~~c~~c~ep  139 (146)
T TIGR02159       105 SVQCPRCGSADTTIT--SIFGPTACKALYRCRACKEP  139 (146)
T ss_pred             CCcCCCCCCCCcEee--cCCCChhhHHHhhhhhhCCc
Confidence            489999999999964  6664  44777999999863

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc

Probab=91.08  E-value=0.15  Score=35.40  Aligned_cols=27  Identities=41%  Similarity=0.883  Sum_probs=22.1

Q ss_pred             cCCCCCCCCCcceeeecccCCCCCchhhhhccc
Q 024229           58 LNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRR   90 (270)
Q Consensus        58 ~~CPRC~S~~TkfcyyNNy~~~QPR~fCk~CrR   90 (270)
                      ..||+|.+.  +...+.+    +.++.|++|++
T Consensus        19 ~~CP~Cg~~--~~~~~~~----~~~~~C~~C~~   45 (46)
T PF12760_consen   19 FVCPHCGST--KHYRLKT----RGRYRCKACRK   45 (46)
T ss_pred             CCCCCCCCe--eeEEeCC----CCeEECCCCCC
Confidence            669999998  6655555    78999999985

It may be a zinc-binding beta ribbon domain that could bind DNA.

>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases

Probab=91.00  E-value=0.13  Score=35.12  Aligned_cols=31  Identities=45%  Similarity=0.757  Sum_probs=21.7

Q ss_pred             ccCCCCCCCCCcceeeecccCCC-CCchhhhhcc
Q 024229           57 VLNCPRCNSTDTKFCYYNNYSFS-QPRHFCKTCR   89 (270)
Q Consensus        57 ~~~CPRC~S~~TkfcyyNNy~~~-QPR~fCk~Cr   89 (270)
                      .+.||+|.+++.-  |=|-.+.. ..||+|++|+
T Consensus         5 ~v~CP~C~s~~~v--~k~G~~~~G~qryrC~~C~   36 (36)
T PF03811_consen    5 DVHCPRCQSTEGV--KKNGKSPSGHQRYRCKDCR   36 (36)
T ss_pred             eeeCCCCCCCCcc--eeCCCCCCCCEeEecCcCC
Confidence            3789999998721  23444433 5899999996

Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated

>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=90.97  E-value=0.14  Score=42.87  Aligned_cols=35  Identities=31%  Similarity=0.695  Sum_probs=27.8

Q ss_pred             cCCCCCCCCCcceeeecccCCCCCchhhhhccccccc
Q 024229           58 LNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTA   94 (270)
Q Consensus        58 ~~CPRC~S~~TkfcyyNNy~~~QPR~fCk~CrRyWT~   94 (270)
                      ..||+|.+.+  +-=++-+.....||.|++|++-|+.
T Consensus        31 ~~cP~C~s~~--~~k~g~~~~~~qRyrC~~C~~tf~~   65 (129)
T COG3677          31 VNCPRCKSSN--VVKIGGIRRGHQRYKCKSCGSTFTV   65 (129)
T ss_pred             CcCCCCCccc--eeeECCccccccccccCCcCcceee
Confidence            6799999999  3335555555999999999998874

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=86.79  E-value=0.52  Score=32.29  Aligned_cols=37  Identities=24%  Similarity=0.712  Sum_probs=28.4

Q ss_pred             cCCCCCCCCCcceeeecccCCCCC---chhhhhccccccc
Q 024229           58 LNCPRCNSTDTKFCYYNNYSFSQP---RHFCKTCRRYWTA   94 (270)
Q Consensus        58 ~~CPRC~S~~TkfcyyNNy~~~QP---R~fCk~CrRyWT~   94 (270)
                      .+||+|...+.-|-..+-.+...|   -|.|..|...|.+
T Consensus         1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w~~   40 (40)
T smart00440        1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRWRE   40 (40)
T ss_pred             CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEeCC
Confidence            369999987777766666666655   4999999999964

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.09  E-value=0.55  Score=31.95  Aligned_cols=36  Identities=25%  Similarity=0.748  Sum_probs=25.0

Q ss_pred             cCCCCCCCCCcceeeecccCCCCCc---hhhhhcccccc
Q 024229           58 LNCPRCNSTDTKFCYYNNYSFSQPR---HFCKTCRRYWT   93 (270)
Q Consensus        58 ~~CPRC~S~~TkfcyyNNy~~~QPR---~fCk~CrRyWT   93 (270)
                      .+||.|...+.-|=-.+..+...|-   |.|.+|..-|+
T Consensus         1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~wr   39 (39)
T PF01096_consen    1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRWR   39 (39)
T ss_dssp             S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEEE
T ss_pred             CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCeeC
Confidence            3699999988776555666666553   89999999885

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	270
d1twfi2	72	RBP9 subunit of RNA polymerase II {Baker's yeast (	91.16
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	87.08

>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.16  E-value=0.12  Score=37.10  Aligned_cols=40  Identities=20%  Similarity=0.526  Sum_probs=31.5

Q ss_pred             cCCCCCCCCCcceeeecccCCCCCc---hhhhhcccccccCCc
Q 024229           58 LNCPRCNSTDTKFCYYNNYSFSQPR---HFCKTCRRYWTAGGS   97 (270)
Q Consensus        58 ~~CPRC~S~~TkfcyyNNy~~~QPR---~fCk~CrRyWT~GGt   97 (270)
                      ..||+|...+.-|=..+-.+..-|-   |.|..|.-.|+...+
T Consensus        24 ~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~~~~   66 (72)
T d1twfi2          24 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQK   66 (72)
T ss_dssp             CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCTT
T ss_pred             CCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCcccccc
Confidence            5799999888777666666555444   899999999998655

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.08  E-value=0.16  Score=34.34  Aligned_cols=36  Identities=19%  Similarity=0.684  Sum_probs=30.8

Q ss_pred             ccCCCCCCCCCcceeeecccCCCCCc---hhhhhccccc
Q 024229           57 VLNCPRCNSTDTKFCYYNNYSFSQPR---HFCKTCRRYW   92 (270)
Q Consensus        57 ~~~CPRC~S~~TkfcyyNNy~~~QPR---~fCk~CrRyW   92 (270)
                      .++||+|.+.+..|--.|..+...|-   +.|..|..-|
T Consensus         9 ~~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~W   47 (50)
T d1tfia_           9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             CEECCCCCCCccEEEEEEccCCCCCceEEEEccccCCee
Confidence            47999999999888777788777776   8999999888