Citrus Sinensis ID: 024231

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Protein Sequence
MQPTAGGSSSSSGGGGGGVGGRGELSRGGLARLRSAPASWIDALLEEELEDPLKPNQCLTQLLSSGDPVSVTAGLSLSQSQLDQVGFQRQNSSPADLFDGYFSNYATPSSYDYVDVSPNSNKRAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVLHFLENSPFGGSETGTHRASEEMQMLGKRLI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccHHHHccccHHHHHHHHHHHcccccccccccHHccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcHHccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHccccc
Coil and Loop (DISEMBL)
mqptaggsssssggggggvggrgelsrgglarlrsapaSWIDALLEEeledplkpnqcltqllssgdpvsvtaGLSLSQSQLDqvgfqrqnsspadlfdgyfsnyatpssydyvdvspnsnkrarednntqfpsptaklnfhshlkveqsgqvpggvsnlvDMDMEKLLEDsvpcrvrakrgcathprsIAERVRRTRISDRIRKLQDlvpnmdkqtNTADMLEEAVEYVKFLQKQIEVLHFlenspfggsetgthRASEEMQMLGKRLI
Flexible Loop (DISEMBL)
mqptaggsssssggggggvGGRGELSRGGLARLRSAPASWIDALLEEELEDPLKPNQCLTQLLSSGDPVSVTAGLSLSQSQLDQVGFQRQNSSPADLFDGYFSNYATPSSYDYVDVSPNSNKRAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGGVSNLVDMDMEKLLEDsvpcrvrakrgcathprsiaervrrtrisdrirklqdlvpnmdkqTNTADMLEEAVEYVKFLQKQIEVLHFLenspfggsetgthraSEEMQMLGKRLI
Low Complexity Region (SEG)
MQPTaggsssssggggggvggrgelsrgglarlrsaPASWIDAlleeeleDPLKPNQCLTQLLSSGDPVSVTAGLSLSQSQLDQVGFQRQNSSPADLFDGYFSNYATPSSYDYVDVSPNSNKRAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIAErvrrtrisdrirKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVLHFLENSPFGGSETGTHRASEEMQMLGKRLI
Disordered region (IsUnstruct)
***************************************WIDALL***************************************************LFDGYFSNYATPSSYDY*******************************************************L**SVPCRVRAKRGCA************************************DMLEEAVEYVKFLQKQIEVLHFLE**************************
Disordered Region (DISOPRED)
*****************************************************************************************************************************************************************************************************RISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVLHF**********************LGKRLI
Disordered Region (DISEMBL)
***********************ELSRGGLARLRSAPASWIDALLEEELEDPLKPNQCLTQLLSSGDPVSVTAGLSLSQSQLDQVGFQRQNSSPADLFDGYFSNYATPSSYDYVDVSPNSNKRAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVLHFLENSPFGGSETGTHRASEEMQMLGKRLI
Disordered Region (DISPRO)
*******************************RLRSAPASWIDALLEEELEDPLKPNQCLT*LLS***************************************N**TPSSY********************************************************LLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVLHFLENSPFGGSETGTHRASEEMQML*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQPTAGGSSSSSGGGGGGVGGRGELSRGGLARLRSAPASWIDALLEEELEDPLKPNQCLTQLLSSGDPVSVTAGLSLSQSQLDQVGFQRQNSSPADLFDGYFSNYATPSSYDYVDVSPNSNKRAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVLHFLENSPFGGSETGTHRASEEMQMLGKRLI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	270	2.2.26 [Sep-21-2011]
Q9C8P8	259	Transcription factor bHLH	yes	no	0.737	0.768	0.580	2e-60
Q9M0R0	262	Transcription factor bHLH	no	no	0.729	0.751	0.593	4e-55
Q9C690	379	Transcription factor bHLH	no	no	0.285	0.203	0.753	8e-31
Q66GR3	359	Transcription factor bHLH	no	no	0.351	0.264	0.632	2e-30
Q8H102	362	Transcription factor bHLH	no	no	0.344	0.256	0.631	4e-26
Q9ZW81	297	Transcription factor bHLH	no	no	0.277	0.252	0.717	1e-25
Q9LSQ3	297	Transcription factor bHLH	no	no	0.237	0.215	0.615	2e-16
Q8S3D5	310	Transcription factor bHLH	no	no	0.303	0.264	0.511	2e-16
Q9ZUG9	350	Transcription factor bHLH	no	no	0.303	0.234	0.5	5e-16
Q8GY61	335	Transcription factor bHLH	no	no	0.274	0.220	0.567	9e-15

>sp|Q9C8P8|BH080_ARATH Transcription factor bHLH80 OS=Arabidopsis thaliana GN=BHLH80 PE=1 SV=1

 Score =  232 bits (592), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 141/243 (58%), Positives = 167/243 (68%), Gaps = 44/243 (18%)

Query: 24  ELSRGGLARLRSAPASWIDALLEEELEDPLKPNQCLTQLLS----SGDPV---------- 69
           E+SR GL+R+RSAPA+WI+ LLEE+ E+ LKPN CLT+LL+    SG  +          
Sbjct: 20  EVSRSGLSRIRSAPATWIETLLEEDEEEGLKPNLCLTELLTGNNNSGGVITSRDDSFEFL 79

Query: 70  -SVTAGLSLSQSQLDQVGFQRQNSSPADLF-------DGYFSNYATPSSYDY----VDVS 117
            SV  GL    +     GF RQNSSPAD         DGYFSN+  P++YDY    VD+S
Sbjct: 80  SSVEQGL---YNHHQGGGFHRQNSSPADFLSGSGSGTDGYFSNFGIPANYDYLSTNVDIS 136

Query: 118 PNSNKRAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGGVSNLVDMDMEKLLEDSVPCRV 177
           P   KR+R D  TQF S          LK EQ   + GG+S ++DM+M+K+ EDSVPCRV
Sbjct: 137 PT--KRSR-DMETQFSS---------QLKEEQ---MSGGISGMMDMNMDKIFEDSVPCRV 181

Query: 178 RAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQI 237
           RAKRGCATHPRSIAERVRRTRISDRIR+LQ+LVPNMDKQTNTADMLEEAVEYVK LQ QI
Sbjct: 182 RAKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQI 241

Query: 238 EVL 240
           + L
Sbjct: 242 QEL 244

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0R0|BH081_ARATH Transcription factor bHLH81 OS=Arabidopsis thaliana GN=BHLH81 PE=2 SV=1

 Score =  214 bits (546), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 136/229 (59%), Positives = 160/229 (69%), Gaps = 32/229 (13%)

Query: 32  RLRSAPASWIDALLEEELEDPLKPNQCLTQLLS--SGD----------PVSVTAGLSLSQ 79
           R+RSAPA+W++ALLEE+ E+ LKPN  LT LL+  S D          P+ V  GL    
Sbjct: 31  RIRSAPATWLEALLEEDEEESLKPNLGLTDLLTGNSNDLPTSRGSFEFPIPVEQGL---- 86

Query: 80  SQLDQVGFQRQNSSPADLF---DGYFSNYATPSSYDY----VDVSPNSNKRAREDNNTQF 132
               Q GF RQNS+PAD     DG+  ++   ++YDY    +DVSP S KR+RE     F
Sbjct: 87  --YQQGGFHRQNSTPADFLSGSDGFIQSFGIQANYDYLSGNIDVSPGS-KRSRE-MEALF 142

Query: 133 PSPTAKLNFHSHLKVEQS-GQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIA 191
            SP     F S +K EQS GQVP GVS++ DM+ME L+EDSV  RVRAKRGCATHPRSIA
Sbjct: 143 SSP----EFTSQMKGEQSSGQVPTGVSSMSDMNMENLMEDSVAFRVRAKRGCATHPRSIA 198

Query: 192 ERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVL 240
           ERVRRTRISDRIRKLQ+LVPNMDKQTNTADMLEEAVEYVK LQ+QI+ L
Sbjct: 199 ERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQEL 247

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C690|BH122_ARATH Transcription factor bHLH122 OS=Arabidopsis thaliana GN=BHLH122 PE=1 SV=1

 Score =  134 bits (336), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 58/77 (75%), Positives = 72/77 (93%)

Query: 164 DMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADML 223
           D+E+LL DS+PC++RAKRGCATHPRSIAERVRRT+IS+R+RKLQDLVPNMD QTNTADML
Sbjct: 291 DIEQLLSDSIPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADML 350

Query: 224 EEAVEYVKFLQKQIEVL 240
           + AV+Y+K LQ+Q++ L
Sbjct: 351 DLAVQYIKDLQEQVKAL 367

Arabidopsis thaliana (taxid: 3702)

>sp|Q66GR3|BH130_ARATH Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130 PE=1 SV=1

 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/98 (63%), Positives = 81/98 (82%), Gaps = 3/98 (3%)

Query: 144 HLKVEQSGQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRI 203
           HL + +S       S++V +D    L+DSVPC++RAKRGCATHPRSIAERVRRTRIS+R+
Sbjct: 249 HLSLPKSSST---ASDMVSVDKYLQLQDSVPCKIRAKRGCATHPRSIAERVRRTRISERM 305

Query: 204 RKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVLH 241
           RKLQ+LVPNMDKQTNT+DML+ AV+Y+K LQ+Q ++L+
Sbjct: 306 RKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQYKILN 343

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H102|BH128_ARATH Transcription factor bHLH128 OS=Arabidopsis thaliana GN=BHLH128 PE=1 SV=1

 Score =  118 bits (296), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/95 (63%), Positives = 75/95 (78%), Gaps = 2/95 (2%)

Query: 159 NLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTN 218
           N +D  M+ L EDSVPC++RAKRGCATHPRSIAER RRTRIS +++KLQDLVPNMDKQT+
Sbjct: 266 NYMDNFMQ-LPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTS 324

Query: 219 TADMLEEAVEYVKFLQKQIEVLHF-LENSPFGGSE 252
            +DML+ AV+++K LQ Q++ L    EN   G SE
Sbjct: 325 YSDMLDLAVQHIKGLQHQLQNLKKDQENCTCGCSE 359

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZW81|BH129_ARATH Transcription factor bHLH129 OS=Arabidopsis thaliana GN=BHLH129 PE=2 SV=2

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/78 (71%), Positives = 66/78 (84%), Gaps = 3/78 (3%)

Query: 165 MEKLL---EDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTAD 221
           ME L+   EDSVPCR RAKRG ATHPRSIAER RRTRIS +++KLQ+LVPNMDKQT+ AD
Sbjct: 218 MENLMNIPEDSVPCRARAKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYAD 277

Query: 222 MLEEAVEYVKFLQKQIEV 239
           ML+ AVE++K LQ Q+EV
Sbjct: 278 MLDLAVEHIKGLQHQVEV 295

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSQ3|BH082_ARATH Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/65 (61%), Positives = 54/65 (83%), Gaps = 1/65 (1%)

Query: 176 RVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQK 235
           RVRA+RG AT P SIAER+RR RI++R++ LQ+LVPN +K T+ A ML+E +EYV+FLQ 
Sbjct: 98  RVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNK-TDKASMLDEIIEYVRFLQL 156

Query: 236 QIEVL 240
           Q++VL
Sbjct: 157 QVKVL 161

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S3D5|BH069_ARATH Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2 SV=2

 Score = 85.9 bits (211), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 64/86 (74%), Gaps = 4/86 (4%)

Query: 176 RVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQK 235
           +VRA+RG AT P SIAER+RR RI++R++ LQ+LVPN +K T+ A ML+E ++YVKFLQ 
Sbjct: 129 KVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNK-TDKASMLDEIIDYVKFLQL 187

Query: 236 QIEVLHFLENSPFGGSETGTHRASEE 261
           Q++VL     S  GG+ + + + SE+
Sbjct: 188 QVKVLSM---SRLGGAASASSQISED 210

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUG9|BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 63/86 (73%), Gaps = 4/86 (4%)

Query: 175 CRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQ 234
            ++RA+RG AT P SIAER+RR RI++R++ LQ+LVPN +K T+ A ML+E ++YVKFLQ
Sbjct: 136 TKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNK-TDKASMLDEIIDYVKFLQ 194

Query: 235 KQIEVLHFLENSPFGGSETGTHRASE 260
            Q++VL     S  GG+ + + + SE
Sbjct: 195 LQVKVLSM---SRLGGAASVSSQISE 217

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY61|BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 42/74 (56%), Positives = 52/74 (70%)

Query: 167 KLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEA 226
           K LE +    VRA+RG AT   SIAERVRR +IS+R++ LQDLVP  DK T  A ML+E 
Sbjct: 162 KELEKTDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEI 221

Query: 227 VEYVKFLQKQIEVL 240
           + YV+ LQ+QIE L
Sbjct: 222 INYVQSLQRQIEFL 235

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
449447621	244	PREDICTED: transcription factor bHLH80-l	0.740	0.819	0.601	6e-60
297846606	256	basic helix-loop-helix family protein [A	0.740	0.781	0.592	4e-59
224145129	246	predicted protein [Populus trichocarpa]	0.792	0.869	0.567	4e-59
15219606	259	transcription factor bHLH80 [Arabidopsis	0.737	0.768	0.580	1e-58
224136007	264	predicted protein [Populus trichocarpa]	0.859	0.878	0.590	1e-55
297809111	263	basic helix-loop-helix family protein [A	0.751	0.771	0.609	7e-55
15233768	262	transcription factor bHLH81 [Arabidopsis	0.729	0.751	0.593	2e-53
255561634	284	DNA binding protein, putative [Ricinus c	0.729	0.693	0.586	1e-51
222080621	259	bHLH transcription factor MYC4 [Catharan	0.744	0.776	0.520	4e-51
225460440	251	PREDICTED: transcription factor bHLH80-l	0.8	0.860	0.526	1e-49

>gi|449447621|ref|XP_004141566.1| PREDICTED: transcription factor bHLH80-like [Cucumis sativus] gi|449522500|ref|XP_004168264.1| PREDICTED: transcription factor bHLH80-like [Cucumis sativus]

 Score =  236 bits (603), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 133/221 (60%), Positives = 153/221 (69%), Gaps = 21/221 (9%)

Query: 28  GGLARLRSAPASWIDALLEEELEDPLKPNQCLTQLLS--SGDPVSVTAGLSLSQSQLDQV 85
            GLAR RSAPA+W++ALLE++ EDPLKPN CLTQLL+  S D  S  A   L        
Sbjct: 24  AGLARFRSAPAAWLEALLEDDEEDPLKPNPCLTQLLAANSSDLDSAPADHPLFDPN-PSP 82

Query: 86  GFQRQNSSPADLF------DGYFSNYATPSSYDYVDVSPNSNKRAREDNNTQFPSPTAKL 139
            F RQNSSP +        +G++++Y   SS   +D+SP S      D    FP      
Sbjct: 83  AFHRQNSSPPEFLAPSGIAEGFYTSYPLNSS-PTLDISPTSKPSTDVDAQNFFP------ 135

Query: 140 NFHSHLKVEQSGQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRI 199
            F   LK E SG     VS+L+DM+MEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRI
Sbjct: 136 KFSPQLKREGSG-----VSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRI 190

Query: 200 SDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVL 240
           SDRIRKLQ++VPNMDKQTNTADMLEEAVEYVKFLQKQI+ L
Sbjct: 191 SDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKFLQKQIQEL 231

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846606|ref|XP_002891184.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp. lyrata] gi|297337026|gb|EFH67443.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  234 bits (596), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 141/238 (59%), Positives = 166/238 (69%), Gaps = 38/238 (15%)

Query: 24  ELSRGGLARLRSAPASWIDALLEEELEDPLKPNQCLTQLLSSGD----------PVSVTA 73
           E+SR GL+R+RSAPA+WI+ LLEE+ E+ LKPN CLT+LL+  +          P SV  
Sbjct: 21  EVSRSGLSRIRSAPATWIETLLEEDEEEGLKPNLCLTELLTGNNSGGVITSHEFPSSVEQ 80

Query: 74  GLSLSQSQLDQVGFQRQNSSPADLF-------DGYFSNYATPSSYDY----VDVSPNSNK 122
           GL     Q    GF RQNSSPAD         DGYFS++  P++YDY    VD+SP   K
Sbjct: 81  GLYNYNHQGG--GFHRQNSSPADFLSGSGVGTDGYFSSFGIPANYDYLSTNVDISPT--K 136

Query: 123 RAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRG 182
           R+R D  TQF S          LK EQ   + GGVS ++DM+M+KL+E SVPCRVRAKRG
Sbjct: 137 RSR-DMETQFSS---------QLKEEQ---MSGGVSGMMDMNMDKLIEGSVPCRVRAKRG 183

Query: 183 CATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVL 240
           CATHPRSIAERVRRTRISDRIR+LQ+LVPNMDKQTNTADMLEEAVEYVK LQ QI+ L
Sbjct: 184 CATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQGQIQEL 241

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145129|ref|XP_002325537.1| predicted protein [Populus trichocarpa] gi|222862412|gb|EEE99918.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 147/259 (56%), Positives = 175/259 (67%), Gaps = 45/259 (17%)

Query: 1   MQPTAGGSSSSSGGGGGGVGGRGELSRGGLARLRSAPASWIDALLEEELEDPLKPNQCLT 60
           MQPT  GSS++S GGG   GG      GG+AR RSAPA+WI+ALL EE EDPLK +Q LT
Sbjct: 1   MQPTPAGSSNTSAGGGSAGGG----GGGGIARFRSAPATWIEALLGEEEEDPLKQSQNLT 56

Query: 61  QLLSSGDPVSV------TAGLSLSQSQLDQVG-FQRQNSSPADLF--------DGYFSNY 105
           +LL+S  P S        +  ++     + VG FQRQNSSP D           GYFS+Y
Sbjct: 57  ELLTSNTPSSRDSVPFNASSAAVEPGLFEPVGGFQRQNSSPTDFLRSSGIGSDQGYFSSY 116

Query: 106 ATPSSYDYV----DVSPNSNKRAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGGVSNLV 161
              S+Y+Y+    DVSP S+KRARE                   K EQ+G  P   S+L+
Sbjct: 117 GNASNYEYMTPNMDVSP-SDKRARE-------------------KGEQTG--PLRASSLI 154

Query: 162 DMDMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTAD 221
           +M+M+KLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQ+LVPNMDKQTNTAD
Sbjct: 155 EMEMDKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTAD 214

Query: 222 MLEEAVEYVKFLQKQIEVL 240
           ML+EA+ YVKFLQ+QI+ L
Sbjct: 215 MLDEALAYVKFLQRQIQEL 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219606|ref|NP_174776.1| transcription factor bHLH80 [Arabidopsis thaliana] gi|75308885|sp|Q9C8P8.1|BH080_ARATH RecName: Full=Transcription factor bHLH80; AltName: Full=Basic helix-loop-helix protein 80; Short=AtbHLH80; Short=bHLH 80; AltName: Full=Transcription factor EN 71; AltName: Full=bHLH transcription factor bHLH080 gi|12324283|gb|AAG52112.1|AC023064_5 helix-loop-helix protein 1A, putative; 28707-26892 [Arabidopsis thaliana] gi|15724178|gb|AAL06481.1|AF411791_1 At1g35460/F12A4_2 [Arabidopsis thaliana] gi|20127088|gb|AAM10958.1|AF488612_1 putative bHLH transcription factor [Arabidopsis thaliana] gi|20147401|gb|AAM10410.1| At1g35460/F12A4_2 [Arabidopsis thaliana] gi|332193674|gb|AEE31795.1| transcription factor bHLH80 [Arabidopsis thaliana]

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 141/243 (58%), Positives = 167/243 (68%), Gaps = 44/243 (18%)

Query: 24  ELSRGGLARLRSAPASWIDALLEEELEDPLKPNQCLTQLLS----SGDPV---------- 69
           E+SR GL+R+RSAPA+WI+ LLEE+ E+ LKPN CLT+LL+    SG  +          
Sbjct: 20  EVSRSGLSRIRSAPATWIETLLEEDEEEGLKPNLCLTELLTGNNNSGGVITSRDDSFEFL 79

Query: 70  -SVTAGLSLSQSQLDQVGFQRQNSSPADLF-------DGYFSNYATPSSYDY----VDVS 117
            SV  GL    +     GF RQNSSPAD         DGYFSN+  P++YDY    VD+S
Sbjct: 80  SSVEQGL---YNHHQGGGFHRQNSSPADFLSGSGSGTDGYFSNFGIPANYDYLSTNVDIS 136

Query: 118 PNSNKRAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGGVSNLVDMDMEKLLEDSVPCRV 177
           P   KR+R D  TQF S          LK EQ   + GG+S ++DM+M+K+ EDSVPCRV
Sbjct: 137 PT--KRSR-DMETQFSS---------QLKEEQ---MSGGISGMMDMNMDKIFEDSVPCRV 181

Query: 178 RAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQI 237
           RAKRGCATHPRSIAERVRRTRISDRIR+LQ+LVPNMDKQTNTADMLEEAVEYVK LQ QI
Sbjct: 182 RAKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQI 241

Query: 238 EVL 240
           + L
Sbjct: 242 QEL 244

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136007|ref|XP_002327358.1| predicted protein [Populus trichocarpa] gi|222835728|gb|EEE74163.1| predicted protein [Populus trichocarpa]

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 153/259 (59%), Positives = 185/259 (71%), Gaps = 27/259 (10%)

Query: 1   MQPTAGGSSSSSGGGGGGVGGRGELSRGGLARLRSAPASWIDALLEEELEDPLKPNQCLT 60
           M P   GSS++SGGG GG GG G    GGL RLRSAPA+W+ ALLEEE EDPLK NQ LT
Sbjct: 1   MHPAPAGSSNTSGGGCGGGGGGGGGGGGGLPRLRSAPATWLLALLEEEEEDPLKQNQNLT 60

Query: 61  QLLSSGDPVSV-TAGLSLSQSQLDQ------VGFQRQNSSPADLF--------DGYFSNY 105
           QLL+S  P S  +A  + S + ++        GFQRQNSSPAD           GYFSNY
Sbjct: 61  QLLTSNAPSSRNSAPFNASSAAVEPGLYETGSGFQRQNSSPADFLGNSGIGSDQGYFSNY 120

Query: 106 ATPSSYDYV----DVSPNSNKRAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGGVSNLV 161
              S+Y+Y+    +VSP S KRARE    +  +P A+  +   LK  Q+G +    S+L+
Sbjct: 121 GIASNYEYMPPNMEVSP-SAKRARE---LELQNPPAR--YPPPLKGAQTGSL--RASSLI 172

Query: 162 DMDMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTAD 221
           +M+M+KLLE+SVPC++RAKRGCATHPRSIAERVRRTRISDRIRKLQ+LVPNMDKQTNTAD
Sbjct: 173 EMEMDKLLEESVPCKIRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTAD 232

Query: 222 MLEEAVEYVKFLQKQIEVL 240
           MLEEAV+YVKFLQ+QI+ L
Sbjct: 233 MLEEAVDYVKFLQRQIQEL 251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809111|ref|XP_002872439.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp. lyrata] gi|297318276|gb|EFH48698.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 136/223 (60%), Positives = 162/223 (72%), Gaps = 20/223 (8%)

Query: 32  RLRSAPASWIDALLEEELEDPLKPNQCLTQLLS--SGD-PVSVTA---GLSLSQSQLDQV 85
           R+RSAPA+W++ALLEE+ E+ LKPN  LT LL+  S D P S ++    + + Q    Q 
Sbjct: 33  RIRSAPATWLEALLEEDEEESLKPNLGLTDLLTGNSNDLPTSRSSFEFPIPVEQGLYQQG 92

Query: 86  GFQRQNSSPADLF---DGYFSNYATPSSYDY----VDVSPNSNKRAREDNNTQFPSPTAK 138
           GF RQNS+PAD     DG+  ++  P++YDY    +DVSP S KR+RE     F SP   
Sbjct: 93  GFHRQNSTPADFLSGSDGFIQSFGIPANYDYLSGNIDVSPGS-KRSRE-MEALFSSP--- 147

Query: 139 LNFHSHLKVEQS-GQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRT 197
             F S +K EQS GQVP GVS + DM+ME L+EDSV  RVRAKRGCATHPRSIAERVRRT
Sbjct: 148 -EFTSQMKGEQSSGQVPAGVSGMTDMNMENLMEDSVAFRVRAKRGCATHPRSIAERVRRT 206

Query: 198 RISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVL 240
           RISDRIRKLQ+LVPNMDKQTNTADMLEEAVEYVK LQ+QI+ L
Sbjct: 207 RISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQEL 249

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233768|ref|NP_192657.1| transcription factor bHLH81 [Arabidopsis thaliana] gi|75311758|sp|Q9M0R0.1|BH081_ARATH RecName: Full=Transcription factor bHLH81; AltName: Full=Basic helix-loop-helix protein 81; Short=AtbHLH81; Short=bHLH 81; AltName: Full=Transcription factor EN 72; AltName: Full=bHLH transcription factor bHLH081 gi|7267561|emb|CAB78042.1| putative protein [Arabidopsis thaliana] gi|34146832|gb|AAQ62424.1| At4g09180 [Arabidopsis thaliana] gi|110741264|dbj|BAF02182.1| putative bHLH transcription factor [Arabidopsis thaliana] gi|332657332|gb|AEE82732.1| transcription factor bHLH81 [Arabidopsis thaliana]

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/229 (59%), Positives = 160/229 (69%), Gaps = 32/229 (13%)

Query: 32  RLRSAPASWIDALLEEELEDPLKPNQCLTQLLS--SGD----------PVSVTAGLSLSQ 79
           R+RSAPA+W++ALLEE+ E+ LKPN  LT LL+  S D          P+ V  GL    
Sbjct: 31  RIRSAPATWLEALLEEDEEESLKPNLGLTDLLTGNSNDLPTSRGSFEFPIPVEQGL---- 86

Query: 80  SQLDQVGFQRQNSSPADLF---DGYFSNYATPSSYDY----VDVSPNSNKRAREDNNTQF 132
               Q GF RQNS+PAD     DG+  ++   ++YDY    +DVSP S KR+RE     F
Sbjct: 87  --YQQGGFHRQNSTPADFLSGSDGFIQSFGIQANYDYLSGNIDVSPGS-KRSRE-MEALF 142

Query: 133 PSPTAKLNFHSHLKVEQS-GQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIA 191
            SP     F S +K EQS GQVP GVS++ DM+ME L+EDSV  RVRAKRGCATHPRSIA
Sbjct: 143 SSP----EFTSQMKGEQSSGQVPTGVSSMSDMNMENLMEDSVAFRVRAKRGCATHPRSIA 198

Query: 192 ERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVL 240
           ERVRRTRISDRIRKLQ+LVPNMDKQTNTADMLEEAVEYVK LQ+QI+ L
Sbjct: 199 ERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQEL 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561634|ref|XP_002521827.1| DNA binding protein, putative [Ricinus communis] gi|223539040|gb|EEF40637.1| DNA binding protein, putative [Ricinus communis]

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 135/230 (58%), Positives = 158/230 (68%), Gaps = 33/230 (14%)

Query: 26  SRGGLARLRSAPASWIDALLEEELE--DPLKPNQCLTQLLSSGD--------PVSVTAGL 75
           +R GLAR RSAP +W++ALLEEE E  DPLKP Q LTQLL+S          P S +   
Sbjct: 18  NRVGLARFRSAPPTWLEALLEEEEEEEDPLKPTQTLTQLLASNTTRNSLPFGPSSSSVVE 77

Query: 76  SLSQSQLDQVG----FQRQNSSPADLF-------DGYFSNYATPSSYDYV----DVSPNS 120
               S L + G    FQRQ+SSPAD         DGYF+N+  P +Y+Y+    DVSP S
Sbjct: 78  PGGGSNLFEPGGGGGFQRQHSSPADFLVNSGIGNDGYFANFGIPPNYEYISPNMDVSP-S 136

Query: 121 NKRAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGG---VSNLVDMDMEKLLEDSVPCRV 177
            KR R+    Q    +A   +   LK EQS QVPGG   +S+L++M+MEKLLEDSVPCRV
Sbjct: 137 GKRTRD---VQLQHSSAN-KYPPLLKGEQSSQVPGGGDGMSSLIEMEMEKLLEDSVPCRV 192

Query: 178 RAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAV 227
           RAKRGCATHPRSIAERVRRTRISDRIRKLQ+LVPNMDKQTNTADML+EAV
Sbjct: 193 RAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAV 242

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222080621|gb|ACM41587.1| bHLH transcription factor MYC4 [Catharanthus roseus]

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 125/240 (52%), Positives = 153/240 (63%), Gaps = 39/240 (16%)

Query: 30  LARLRSAPASWIDALLEEELED--------------PLKP------NQCLTQLLSSGDPV 69
           LAR RSAPA+W++ALLE+E  D              PL P          T++ S+G   
Sbjct: 17  LARFRSAPATWLEALLEDEETDVVLDPPVLATSNKPPLHPPVGASSQPQSTEVSSAGGRY 76

Query: 70  SVTAGL--SLSQSQLDQVGFQRQNSSPADLF-DGYFSNYATPSSYDYV------DVSPNS 120
           +   GL  S+        G  RQNSSPA+   DGYFS++  P++YDY+      DVS + 
Sbjct: 77  AADLGLLDSVGSGAGGLSGLLRQNSSPAEFLSDGYFSSFGIPTNYDYLMSSSPLDVSESP 136

Query: 121 NKRAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGGVSNLVDMDMEKLLEDSVPCRVRAK 180
           +KR RE ++    +  A +           G+  GG+S L+D +M+KL EDSV CRVRAK
Sbjct: 137 SKRPREADSNAAKASLAVVK----------GEQGGGISGLLDAEMDKLAEDSVLCRVRAK 186

Query: 181 RGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVL 240
           RGCATHPRSIAERVRRTRISDRIRKLQ+LVPNMDKQTNTADMLEEAVEYVKFLQKQI+ L
Sbjct: 187 RGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKFLQKQIQEL 246

Source: Catharanthus roseus

Species: Catharanthus roseus

Genus: Catharanthus

Family: Apocynaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460440|ref|XP_002271390.1| PREDICTED: transcription factor bHLH80-like [Vitis vinifera]

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 138/262 (52%), Positives = 167/262 (63%), Gaps = 46/262 (17%)

Query: 1   MQPTAGGSSSSSGGGGGGVGGRGELSRGGLARLRSAPASWIDALLEEELEDPL-----KP 55
           MQPT GG                E++R  LAR RSAPA+W+D LLEEE  +       KP
Sbjct: 1   MQPTRGG----------------EVNR--LARFRSAPATWLDTLLEEEEGEEEDDDSLKP 42

Query: 56  NQCLTQLLSSGDPVSVTAGLSLSQSQLDQV------GFQRQNSSPADLF------DGYFS 103
            Q LTQLL+     +  +G  +  S           GF RQ+S P +        +GYFS
Sbjct: 43  TQSLTQLLAGSGGPAGGSGGYIPASDPSMFDGAGAQGFLRQSSLPTEFLSQINSSEGYFS 102

Query: 104 NYATPSSYDY-----VDVSPNSNKRAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGGVS 158
           ++  P+ +DY     VD SP + KRARE       S ++   F S  K EQS ++ G V+
Sbjct: 103 SFGIPAGFDYAASPAVDGSP-TGKRARE-----LESRSSSRKFSSQSKGEQSSRLTGSVA 156

Query: 159 NLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTN 218
           +L+D+DMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQ+LVPNMDKQTN
Sbjct: 157 SLLDVDMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTN 216

Query: 219 TADMLEEAVEYVKFLQKQIEVL 240
           TADMLEEAVEYVKFLQ++I+ L
Sbjct: 217 TADMLEEAVEYVKFLQQKIQEL 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
TAIR|locus:2141573	262	FBH2 "AT4G09180" [Arabidopsis	0.733	0.755	0.522	2.4e-44
TAIR|locus:2008693	259	FBH1 "AT1G35460" [Arabidopsis	0.7	0.729	0.497	9.3e-43
TAIR|locus:2026037	379	FBH3 "AT1G51140" [Arabidopsis	0.285	0.203	0.636	4.4e-25
TAIR|locus:2059979	359	FBH4 "AT2G42280" [Arabidopsis	0.592	0.445	0.406	8.7e-24
TAIR|locus:505006103	362	AT1G05805 "AT1G05805" [Arabido	0.429	0.320	0.5	3.4e-23
UNIPROTKB|Q8S490	150	rau1 "Transcription factor RAU	0.285	0.513	0.620	4.9e-21
UNIPROTKB|Q7XT55	218	OSJNBa0084K20.3 "OSJNBa0076N16	0.418	0.518	0.463	4.6e-18
TAIR|locus:2183078	173	SRS8 "AT5G33210" [Arabidopsis	0.118	0.184	0.875	3.5e-11
UNIPROTKB|Q6Z7E7	524	P0020C11.18 "Putative bHLH tra	0.237	0.122	0.538	5.3e-11
TAIR|locus:2126624	310	LRL2 "AT4G30980" [Arabidopsis	0.303	0.264	0.441	8.8e-11

TAIR|locus:2141573 FBH2 "AT4G09180" [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 114/218 (52%), Positives = 138/218 (63%)

Query:    37 PASWIDAXXXXXXXDPLKPNQCLTQLLS--SGD-PVSVTA---GLSLSQSQLDQVGFQRQ 90
             PA+W++A       + LKPN  LT LL+  S D P S  +    + + Q    Q GF RQ
Sbjct:    36 PATWLEALLEEDEEESLKPNLGLTDLLTGNSNDLPTSRGSFEFPIPVEQGLYQQGGFHRQ 95

Query:    91 NSSPADLF---DGYFSNYATPSSYDY----VDVSPNSNKRAREDNNTQFPSPTAKLNFHS 143
             NS+PAD     DG+  ++   ++YDY    +DVSP S KR+RE     F SP     F S
Sbjct:    96 NSTPADFLSGSDGFIQSFGIQANYDYLSGNIDVSPGS-KRSRE-MEALFSSP----EFTS 149

Query:   144 HLKVEQS-GQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIAEXXXXXXXXXX 202
              +K EQS GQVP GVS++ DM+ME L+EDSV  RVRAKRGCATHPRSIAE          
Sbjct:   150 QMKGEQSSGQVPTGVSSMSDMNMENLMEDSVAFRVRAKRGCATHPRSIAERVRRTRISDR 209

Query:   203 XXKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVL 240
               KLQ+LVPNMDKQTNTADMLEEAVEYVK LQ+QI+ L
Sbjct:   210 IRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQEL 247

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2008693 FBH1 "AT1G35460" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 113/227 (49%), Positives = 137/227 (60%)

Query:    37 PASWIDAXXXXXXXDPLKPNQCLTQLLS----SGDPVSVTAGLSLSQSQLDQV------- 85
             PA+WI+        + LKPN CLT+LL+    SG  ++         S ++Q        
Sbjct:    33 PATWIETLLEEDEEEGLKPNLCLTELLTGNNNSGGVITSRDDSFEFLSSVEQGLYNHHQG 92

Query:    86 -GFQRQNSSPADLF-------DGYFSNYATPSSYDY----VDVSPNSNKRAREDNNTQFP 133
              GF RQNSSPAD         DGYFSN+  P++YDY    VD+SP   KR+R D  TQF 
Sbjct:    93 GGFHRQNSSPADFLSGSGSGTDGYFSNFGIPANYDYLSTNVDISPT--KRSR-DMETQFS 149

Query:   134 SPTAKLNFHSHLKVEQSGQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIAEX 193
             S          LK EQ   + GG+S ++DM+M+K+ EDSVPCRVRAKRGCATHPRSIAE 
Sbjct:   150 S---------QLKEEQ---MSGGISGMMDMNMDKIFEDSVPCRVRAKRGCATHPRSIAER 197

Query:   194 XXXXXXXXXXXKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVL 240
                        +LQ+LVPNMDKQTNTADMLEEAVEYVK LQ QI+ L
Sbjct:   198 VRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQEL 244

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2026037 FBH3 "AT1G51140" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
 Identities = 49/77 (63%), Positives = 60/77 (77%)

Query:   164 DMEKLLEDSVPCRVRAKRGCATHPRSIAEXXXXXXXXXXXXKLQDLVPNMDKQTNTADML 223
             D+E+LL DS+PC++RAKRGCATHPRSIAE            KLQDLVPNMD QTNTADML
Sbjct:   291 DIEQLLSDSIPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADML 350

Query:   224 EEAVEYVKFLQKQIEVL 240
             + AV+Y+K LQ+Q++ L
Sbjct:   351 DLAVQYIKDLQEQVKAL 367

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048573 "photoperiodism, flowering" evidence=IMP

TAIR|locus:2059979 FBH4 "AT2G42280" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 70/172 (40%), Positives = 97/172 (56%)

Query:    76 SLSQSQLDQVGFQRQNSSPADLFDGYFSNYATPSSYDYVDVSPNSNKRAREDNNTQF--- 132
             SLS      +G   Q    A   +  +S++  PSS+  +D + +S KR  ED+   F   
Sbjct:   178 SLSSRPPSSLGMLSQIPEIAPETNFPYSHWNDPSSF--ID-NLSSLKREAEDDGKLFLGA 234

Query:   133 ---PSPTAKLNFHSHLKVEQSGQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRGCATHPRS 189
                 S         HL + +S       S++V +D    L+DSVPC++RAKRGCATHPRS
Sbjct:   235 QNGESGNRMQLLSHHLSLPKSSST---ASDMVSVDKYLQLQDSVPCKIRAKRGCATHPRS 291

Query:   190 IAEXXXXXXXXXXXXKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVLH 241
             IAE            KLQ+LVPNMDKQTNT+DML+ AV+Y+K LQ+Q ++L+
Sbjct:   292 IAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQYKILN 343

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0046685 "response to arsenic-containing substance" evidence=RCA

TAIR|locus:505006103 AT1G05805 "AT1G05805" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
 Identities = 61/122 (50%), Positives = 77/122 (63%)

Query:   133 PSPTAKLNFHSHLKVEQSGQVPGGVS-NLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIA 191
             PS  +K +  S L  + S  +P   S N +D  M+ L EDSVPC++RAKRGCATHPRSIA
Sbjct:   242 PSKRSK-DMDSGLFSQYS--LPSDTSMNYMDNFMQ-LPEDSVPCKIRAKRGCATHPRSIA 297

Query:   192 EXXXXXXXXXXXXKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVLHF-LENSPFGG 250
             E            KLQDLVPNMDKQT+ +DML+ AV+++K LQ Q++ L    EN   G 
Sbjct:   298 ERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQLQNLKKDQENCTCGC 357

Query:   251 SE 252
             SE
Sbjct:   358 SE 359

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q8S490 rau1 "Transcription factor RAU1" [Oryza sativa (taxid:4530)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 49/79 (62%), Positives = 61/79 (77%)

Query:   165 MEKLLE--DSVPCRVRAKRGCATHPRSIAEXXXXXXXXXXXXKLQDLVPNMDKQTNTADM 222
             +EK L+  D+VPC++RAKRGCATHPRSIAE            KLQ+LVPNMDKQTNTADM
Sbjct:    55 IEKFLQFQDAVPCKIRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADM 114

Query:   223 LEEAVEYVKFLQKQIEVLH 241
             L+ AV+Y+K LQKQ++ L+
Sbjct:   115 LDLAVDYIKDLQKQVKGLN 133

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q7XT55 OSJNBa0084K20.3 "OSJNBa0076N16.1 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 57/123 (46%), Positives = 75/123 (60%)

Query:   126 EDNNT-QFPSPTAKLNFHSHLKVEQSGQVPGGVSNLV---DM-DMEKLLE---DSVPCRV 177
             ED+N+  F + T K   H +  +  +  +    S LV   +M  +EK L+   D VP RV
Sbjct:    77 EDSNSIVFSTSTGKSGAHGNDDIIAT--LSNYESQLVAPREMAGVEKYLQMQHDQVPFRV 134

Query:   178 RAKRGCATHPRSIAEXXXXXXXXXXXXKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQI 237
             RAKRGCATHPRSIAE            KLQ LVPNMDKQT+T+DML+ AV+++K LQ Q+
Sbjct:   135 RAKRGCATHPRSIAERERRTRISEKLRKLQALVPNMDKQTSTSDMLDLAVDHIKGLQSQL 194

Query:   238 EVL 240
             + L
Sbjct:   195 QTL 197

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2183078 SRS8 "AT5G33210" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 28/32 (87%), Positives = 31/32 (96%)

Query:   161 VDMDMEKLLEDSVPCRVRAKRGCATHPRSIAE 192
             +DM+MEK+ EDSVPCRVRAKRGCATHPRSIAE
Sbjct:     1 MDMNMEKIFEDSVPCRVRAKRGCATHPRSIAE 32

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q6Z7E7 P0020C11.18 "Putative bHLH transcription factor PTF1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 156 (60.0 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
 Identities = 35/65 (53%), Positives = 43/65 (66%)

Query:   176 RVRAKRGCATHPRSIAEXXXXXXXXXXXXKLQDLVPNMDKQTNTADMLEEAVEYVKFLQK 235
             RVRA+RG AT P SIAE             LQ+LVPN +K TN A ML+E ++YVKFLQ 
Sbjct:   313 RVRARRGQATDPHSIAERLRREKISDRMKDLQELVPNSNK-TNKASMLDEIIDYVKFLQL 371

Query:   236 QIEVL 240
             Q++VL
Sbjct:   372 QVKVL 376

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2126624 LRL2 "AT4G30980" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 8.8e-11, P = 8.8e-11
 Identities = 38/86 (44%), Positives = 53/86 (61%)

Query:   176 RVRAKRGCATHPRSIAEXXXXXXXXXXXXKLQDLVPNMDKQTNTADMLEEAVEYVKFLQK 235
             +VRA+RG AT P SIAE             LQ+LVPN +K T+ A ML+E ++YVKFLQ 
Sbjct:   129 KVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNK-TDKASMLDEIIDYVKFLQL 187

Query:   236 QIEVLHFLENSPFGGSETGTHRASEE 261
             Q++VL     S  GG+ + + + SE+
Sbjct:   188 QVKVLSM---SRLGGAASASSQISED 210

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0080147 "root hair cell development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C8P8	BH080_ARATH	No assigned EC number	0.5802	0.7370	0.7683	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_103992.1 annotation not avaliable (256 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	270
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	2e-12
smart00353	53	smart00353, HLH, helix loop helix domain	4e-11
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	2e-09

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 60.3 bits (147), Expect = 2e-12
 Identities = 19/54 (35%), Positives = 36/54 (66%), Gaps = 2/54 (3%)

Query: 187 PRSIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQIE 238
             ++ ER RR RI+D   +L+ L+P +   K+ + A++L +AV+Y+K LQ+ ++
Sbjct: 7   AHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 56.5 bits (137), Expect = 4e-11
 Identities = 17/52 (32%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 189 SIAERVRRTRISDRIRKLQDLVP--NMDKQTNTADMLEEAVEYVKFLQKQIE 238
           +  ER RR +I++   +L+ L+P    +K+ + A++L  A+EY+K LQ++++
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 51.7 bits (125), Expect = 2e-09
 Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 189 SIAERVRRTRISDRIRKLQDLVPN-MDKQTNTADMLEEAVEYVKFLQ 234
           +  ER RR RI+D   +L++L+P   +K+ + A++L  A+EY+K LQ
Sbjct: 6   NERERRRRDRINDAFEELRELLPTPPNKKLSKAEILRLAIEYIKHLQ 52

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	270
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.41
smart00353	53	HLH helix loop helix domain.	99.36
KOG1318	411	consensus Helix loop helix transcription factor EB	99.36
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.34
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	99.13
KOG4304	250	consensus Transcriptional repressors of the hairy/	98.53
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	98.4
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	98.31
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	97.76
KOG3960	284	consensus Myogenic helix-loop-helix transcription	97.48
KOG4029	228	consensus Transcription factor HAND2/Transcription	97.41
PLN03217	93	transcription factor ATBS1; Provisional	97.16
KOG0561	373	consensus bHLH transcription factor [Transcription	97.07
KOG3910	632	consensus Helix loop helix transcription factor [T	93.0
KOG4447	173	consensus Transcription factor TWIST [Transcriptio	90.76
KOG3558	768	consensus Hypoxia-inducible factor 1/Neuronal PAS	88.91
KOG3560	712	consensus Aryl-hydrocarbon receptor [Transcription	83.39
KOG3559	598	consensus Transcriptional regulator SIM1 [Transcri	80.93

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.41  E-value=2.2e-13  Score=96.27  Aligned_cols=54  Identities=35%  Similarity=0.660  Sum_probs=49.0

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHhcccCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 024231          185 THPRSIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQIE  238 (270)
Q Consensus       185 t~~HsiaERrRRerIneri~~Lr~LVP~~--~Kq~DKAsIL~eAIdYIK~LQ~QVk  238 (270)
                      +..|+.+||+||++||+.|..|+.+||..  ..++||++||..||+||++|+.+++
T Consensus         5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            34699999999999999999999999999  3459999999999999999998863

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.36  E-value=1.8e-12  Score=90.31  Aligned_cols=50  Identities=34%  Similarity=0.664  Sum_probs=45.0

Q ss_pred             cHHHHHHHHHHHHHHHHHhcccCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 024231          189 SIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQIE  238 (270)
Q Consensus       189 siaERrRRerIneri~~Lr~LVP~~--~Kq~DKAsIL~eAIdYIK~LQ~QVk  238 (270)
                      +.+||+||++||+.|..|+.+||.+  ..+++|++||..||+||+.|+.+++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999963  2338999999999999999999886

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=99.36  E-value=9.4e-13  Score=127.94  Aligned_cols=71  Identities=27%  Similarity=0.469  Sum_probs=60.6

Q ss_pred             cccccccCCCCCCcHHHHHHHHHHHHHHHHHhcccCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHHhccCC
Q 024231          176 RVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDK---QTNTADMLEEAVEYVKFLQKQIEVLHFLENS  246 (270)
Q Consensus       176 k~rakRg~at~~HsiaERrRRerIneri~~Lr~LVP~~~K---q~DKAsIL~eAIdYIK~LQ~QVk~Le~l~~~  246 (270)
                      ....|.+++++.|+++|||||++||++|++|..|||.|..   +++|.+||..+++||+.||+..++...+++.
T Consensus       225 ~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~r  298 (411)
T KOG1318|consen  225 TALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENR  298 (411)
T ss_pred             chhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3445666667889999999999999999999999999953   3799999999999999999988877666554

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.34  E-value=1.6e-12  Score=92.03  Aligned_cols=48  Identities=35%  Similarity=0.639  Sum_probs=44.7

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhcccCCC----CCCCChhhHHHHHHHHHHHHH
Q 024231          187 PRSIAERVRRTRISDRIRKLQDLVPNM----DKQTNTADMLEEAVEYVKFLQ  234 (270)
Q Consensus       187 ~HsiaERrRRerIneri~~Lr~LVP~~----~Kq~DKAsIL~eAIdYIK~LQ  234 (270)
                      .|+..||+||++||+.|..|+.+||.+    ..+++|++||+.||+||++||
T Consensus         4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            499999999999999999999999997    234999999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=99.13  E-value=5.5e-11  Score=106.47  Aligned_cols=63  Identities=29%  Similarity=0.476  Sum_probs=52.6

Q ss_pred             cccccccCCCCCCcHHHHHHHHHHHHHHHHHhcccCCCCC------CCChhhHHHHHHHHHHHHHHHHHHHH
Q 024231          176 RVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDK------QTNTADMLEEAVEYVKFLQKQIEVLH  241 (270)
Q Consensus       176 k~rakRg~at~~HsiaERrRRerIneri~~Lr~LVP~~~K------q~DKAsIL~eAIdYIK~LQ~QVk~Le  241 (270)
                      .++.||+++   |..+||+||+.||..+..|++|||.|..      ++.||.||..+|+||.+|++++.+-+
T Consensus        57 syk~rrr~a---HtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe  125 (229)
T KOG1319|consen   57 SYKDRRRRA---HTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQE  125 (229)
T ss_pred             hHHHHHHHH---HHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555544   9999999999999999999999998764      26799999999999999987765544

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=98.53  E-value=3.6e-08  Score=90.68  Aligned_cols=53  Identities=32%  Similarity=0.524  Sum_probs=46.4

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhcccCCCCC-------CCChhhHHHHHHHHHHHHHHHHHH
Q 024231          187 PRSIAERVRRTRISDRIRKLQDLVPNMDK-------QTNTADMLEEAVEYVKFLQKQIEV  239 (270)
Q Consensus       187 ~HsiaERrRRerIneri~~Lr~LVP~~~K-------q~DKAsIL~eAIdYIK~LQ~QVk~  239 (270)
                      .|-+.|||||+|||+-+.+|++|||.+.+       +++||.||+-||+|+|.||...+.
T Consensus        35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~   94 (250)
T KOG4304|consen   35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA   94 (250)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence            46799999999999999999999996543       378999999999999999876543

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=98.40  E-value=5.5e-07  Score=94.12  Aligned_cols=53  Identities=25%  Similarity=0.454  Sum_probs=48.8

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHhcccCCCC---CCCChhhHHHHHHHHHHHHHHHH
Q 024231          185 THPRSIAERVRRTRISDRIRKLQDLVPNMD---KQTNTADMLEEAVEYVKFLQKQI  237 (270)
Q Consensus       185 t~~HsiaERrRRerIneri~~Lr~LVP~~~---Kq~DKAsIL~eAIdYIK~LQ~QV  237 (270)
                      +.+|+.+|||||+++|.-|.+|-+|||.+.   .|+||.+||..||++||.++.+-
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~~   76 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQE   76 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhhh
Confidence            467999999999999999999999999998   56999999999999999888753

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=98.31  E-value=3.2e-07  Score=96.72  Aligned_cols=61  Identities=31%  Similarity=0.515  Sum_probs=55.2

Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHHHHhcccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 024231          182 GCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVLHF  242 (270)
Q Consensus       182 g~at~~HsiaERrRRerIneri~~Lr~LVP~~~Kq~DKAsIL~eAIdYIK~LQ~QVk~Le~  242 (270)
                      +.++.+||++|||.|-.|||||.+|+++||+..-++.|+.+|..||+||++|+...+.+..
T Consensus       274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~  334 (953)
T KOG2588|consen  274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKL  334 (953)
T ss_pred             CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccch
Confidence            3557899999999999999999999999999987799999999999999999887776653

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=97.76  E-value=8.9e-05  Score=68.10  Aligned_cols=56  Identities=25%  Similarity=0.418  Sum_probs=46.6

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHhcccCCCCCCC--ChhhHHHHHHHHHHHHHHHHHHH
Q 024231          185 THPRSIAERVRRTRISDRIRKLQDLVPNMDKQT--NTADMLEEAVEYVKFLQKQIEVL  240 (270)
Q Consensus       185 t~~HsiaERrRRerIneri~~Lr~LVP~~~Kq~--DKAsIL~eAIdYIK~LQ~QVk~L  240 (270)
                      +..|+.-||+||..|.+.|..|+.+||......  +.++||+.|+.||+.|+.+....
T Consensus        60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~  117 (232)
T KOG2483|consen   60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQ  117 (232)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHH
Confidence            346899999999999999999999999876422  26999999999999997655443

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=97.48  E-value=0.00025  Score=66.42  Aligned_cols=58  Identities=19%  Similarity=0.353  Sum_probs=50.2

Q ss_pred             CcHHHHHHHHHHHHHHHHHhc-ccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhccC
Q 024231          188 RSIAERVRRTRISDRIRKLQD-LVPNMDKQTNTADMLEEAVEYVKFLQKQIEVLHFLEN  245 (270)
Q Consensus       188 HsiaERrRRerIneri~~Lr~-LVP~~~Kq~DKAsIL~eAIdYIK~LQ~QVk~Le~l~~  245 (270)
                      -.+.||||-.|||+-|.+|+. -+++-+.++-|..||..||+||..||.-++++..++-
T Consensus       122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~  180 (284)
T KOG3960|consen  122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK  180 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence            467899999999999999964 5677777799999999999999999998888876554

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=97.41  E-value=0.00014  Score=65.15  Aligned_cols=57  Identities=23%  Similarity=0.405  Sum_probs=49.3

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhcccCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHHhc
Q 024231          187 PRSIAERVRRTRISDRIRKLQDLVPNM---DKQTNTADMLEEAVEYVKFLQKQIEVLHFL  243 (270)
Q Consensus       187 ~HsiaERrRRerIneri~~Lr~LVP~~---~Kq~DKAsIL~eAIdYIK~LQ~QVk~Le~l  243 (270)
                      .++..||.|=..||..|..||.+||..   +|++.|..+|..||.||++|+.-++.-+.-
T Consensus       112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~  171 (228)
T KOG4029|consen  112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP  171 (228)
T ss_pred             hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence            467779999999999999999999953   566999999999999999999877665543

>PLN03217 transcription factor ATBS1; Provisional

Probab=97.16  E-value=0.00095  Score=53.72  Aligned_cols=48  Identities=27%  Similarity=0.544  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHhcccCCCCC-----CCChhhHHHHHHHHHHHHHHHHHHHHh
Q 024231          195 RRTRISDRIRKLQDLVPNMDK-----QTNTADMLEEAVEYVKFLQKQIEVLHF  242 (270)
Q Consensus       195 RRerIneri~~Lr~LVP~~~K-----q~DKAsIL~eAIdYIK~LQ~QVk~Le~  242 (270)
                      --+.|+|-+..||.|+|....     +...+-||.|+..||+.|+.+|..|..
T Consensus        18 sddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSe   70 (93)
T PLN03217         18 SEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSE   70 (93)
T ss_pred             CHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            347899999999999996432     257888999999999999999999974

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=97.07  E-value=0.00049  Score=66.08  Aligned_cols=51  Identities=22%  Similarity=0.411  Sum_probs=43.7

Q ss_pred             cHHHHHHHHHHHHHHHHHhcccCCCC-CCCChhhHHHHHHHHHHHHHHHHHH
Q 024231          189 SIAERVRRTRISDRIRKLQDLVPNMD-KQTNTADMLEEAVEYVKFLQKQIEV  239 (270)
Q Consensus       189 siaERrRRerIneri~~Lr~LVP~~~-Kq~DKAsIL~eAIdYIK~LQ~QVk~  239 (270)
                      +-.||||=.-||..|..||.|+|... .++.||.||..+.+||..|..+.-+
T Consensus        65 NsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~  116 (373)
T KOG0561|consen   65 NSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTE  116 (373)
T ss_pred             cchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccc
Confidence            55699999999999999999999654 2399999999999999999665433

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=93.00  E-value=0.078  Score=54.18  Aligned_cols=55  Identities=20%  Similarity=0.320  Sum_probs=45.3

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhcccCC---CCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 024231          187 PRSIAERVRRTRISDRIRKLQDLVPN---MDKQTNTADMLEEAVEYVKFLQKQIEVLH  241 (270)
Q Consensus       187 ~HsiaERrRRerIneri~~Lr~LVP~---~~Kq~DKAsIL~eAIdYIK~LQ~QVk~Le  241 (270)
                      ..+..||.|=..||+-|++|..+.=-   .+|.-.|--||-.||.-|-.|++||.+-.
T Consensus       529 aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN  586 (632)
T KOG3910|consen  529 ANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN  586 (632)
T ss_pred             hhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence            46778999999999999999998653   33334689999999999999999997643

>KOG4447 consensus Transcription factor TWIST [Transcription]

Probab=90.76  E-value=0.12  Score=45.70  Aligned_cols=49  Identities=24%  Similarity=0.470  Sum_probs=43.4

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhcccCC--CCCCCChhhHHHHHHHHHHHHHHH
Q 024231          187 PRSIAERVRRTRISDRIRKLQDLVPN--MDKQTNTADMLEEAVEYVKFLQKQ  236 (270)
Q Consensus       187 ~HsiaERrRRerIneri~~Lr~LVP~--~~Kq~DKAsIL~eAIdYIK~LQ~Q  236 (270)
                      -|++-||+|=..+|+-|.+||.++|.  ++| +.|.--|.-|-.||-||-.-
T Consensus        81 ~anvrerqRtqsLn~AF~~lr~iiptlPsdk-lSkiqtLklA~ryidfl~~v  131 (173)
T KOG4447|consen   81 MANVRERQRTQSLNEAFAALRKIIPTLPSDK-LSKIQTLKLAARYIDFLYQV  131 (173)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhhcCCCCccc-cccccchhhcccCCchhhhc
Confidence            38899999999999999999999995  456 78999999999999999543

>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]

Probab=88.91  E-value=0.31  Score=51.47  Aligned_cols=42  Identities=21%  Similarity=0.474  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcccCC---CCCCCChhhHHHHHHHHHH
Q 024231          190 IAERVRRTRISDRIRKLQDLVPN---MDKQTNTADMLEEAVEYVK  231 (270)
Q Consensus       190 iaERrRRerIneri~~Lr~LVP~---~~Kq~DKAsIL~eAIdYIK  231 (270)
                      -|.|.||.|=|+-|.+|..++|-   +.-++|||+|+.-||-|+|
T Consensus        52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR   96 (768)
T KOG3558|consen   52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR   96 (768)
T ss_pred             hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence            46899999999999999999993   2335899999999999986

>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]

Probab=83.39  E-value=1  Score=46.84  Aligned_cols=40  Identities=23%  Similarity=0.494  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHhcccCC----CCCCCChhhHHHHHHHHHHH
Q 024231          192 ERVRRTRISDRIRKLQDLVPN----MDKQTNTADMLEEAVEYVKF  232 (270)
Q Consensus       192 ERrRRerIneri~~Lr~LVP~----~~Kq~DKAsIL~eAIdYIK~  232 (270)
                      -+|-|+|+|.-++.|-.|+|-    +.| +||-+||.-+|-|++.
T Consensus        33 SKRHRdRLNaELD~lAsLLPfpqdiisK-LDkLSVLRLSVSyLr~   76 (712)
T KOG3560|consen   33 SKRHRDRLNAELDHLASLLPFPQDIISK-LDKLSVLRLSVSYLRV   76 (712)
T ss_pred             chhHHHHhhhHHHHHHHhcCCCHHHHhh-hhhhhhhhhhHHHHHH
Confidence            577899999999999999994    455 8999999999999874

>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]

Probab=80.93  E-value=1.7  Score=44.10  Aligned_cols=43  Identities=26%  Similarity=0.399  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCC---CCCCChhhHHHHHHHHHHH
Q 024231          190 IAERVRRTRISDRIRKLQDLVPNM---DKQTNTADMLEEAVEYVKF  232 (270)
Q Consensus       190 iaERrRRerIneri~~Lr~LVP~~---~Kq~DKAsIL~eAIdYIK~  232 (270)
                      -+.|.||++=|-.|.+|-+|+|-.   +.|+||++|+.-|--|||-
T Consensus         7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm   52 (598)
T KOG3559|consen    7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM   52 (598)
T ss_pred             hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence            467999999999999999999953   4468999999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	270
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.7
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.65
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.58
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.56
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.55
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.5
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.44
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.44
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.41
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.4
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.23
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	99.06
4f3l_A	361	Mclock, circadian locomoter output cycles protein	99.05
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	98.95
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.93
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.85
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.47
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	97.96

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.70  E-value=1.9e-17  Score=134.84  Aligned_cols=93  Identities=27%  Similarity=0.402  Sum_probs=52.6

Q ss_pred             CccccccccCCCCCCcHHHHHHHHHHHHHHHHHhcccCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHHhccCC--CC
Q 024231          174 PCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDK---QTNTADMLEEAVEYVKFLQKQIEVLHFLENS--PF  248 (270)
Q Consensus       174 p~k~rakRg~at~~HsiaERrRRerIneri~~Lr~LVP~~~K---q~DKAsIL~eAIdYIK~LQ~QVk~Le~l~~~--~~  248 (270)
                      +++..+++++++.+|+++||+||++||++|.+|++|||.+.+   +++|++||+.||+||++||.+++.|...+..  ..
T Consensus        17 ~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l   96 (118)
T 4ati_A           17 EARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKL   96 (118)
T ss_dssp             --------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred             hHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677888888999999999999999999999999998853   4899999999999999999999999865432  22


Q ss_pred             CCCCCCCcCcHHHHHHhh
Q 024231          249 GGSETGTHRASEEMQMLG  266 (270)
Q Consensus       249 ~g~~sG~~~~seem~~l~  266 (270)
                      .....-....-+|++|+.
T Consensus        97 ~~~n~~L~~riqeLE~~a  114 (118)
T 4ati_A           97 EHANRHLLLRVQELEMQA  114 (118)
T ss_dssp             ------------------
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            222223335556666543

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.65  E-value=5.6e-17  Score=124.22  Aligned_cols=58  Identities=29%  Similarity=0.511  Sum_probs=53.9

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHhcccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 024231          185 THPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVLHF  242 (270)
Q Consensus       185 t~~HsiaERrRRerIneri~~Lr~LVP~~~Kq~DKAsIL~eAIdYIK~LQ~QVk~Le~  242 (270)
                      +.+|+++||+||++||++|.+|++|||+++.++||++||.+||+||++||.+++.|+.
T Consensus         7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~   64 (82)
T 1am9_A            7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ   64 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3569999999999999999999999999855599999999999999999999999874

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.58  E-value=7.7e-16  Score=116.47  Aligned_cols=58  Identities=16%  Similarity=0.377  Sum_probs=52.4

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHhcccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 024231          185 THPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVLHF  242 (270)
Q Consensus       185 t~~HsiaERrRRerIneri~~Lr~LVP~~~Kq~DKAsIL~eAIdYIK~LQ~QVk~Le~  242 (270)
                      +.+|+++||+||++||++|.+|++|||....++||++||+.||+||+.||.++.=|+.
T Consensus         9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~~   66 (71)
T 4h10_B            9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLEH   66 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            3469999999999999999999999998765599999999999999999999876653

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.56  E-value=7.8e-16  Score=112.36  Aligned_cols=56  Identities=21%  Similarity=0.392  Sum_probs=50.1

Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHhcccCCCCC-----CCChhhHHHHHHHHHHHHHHHHH
Q 024231          183 CATHPRSIAERVRRTRISDRIRKLQDLVPNMDK-----QTNTADMLEEAVEYVKFLQKQIE  238 (270)
Q Consensus       183 ~at~~HsiaERrRRerIneri~~Lr~LVP~~~K-----q~DKAsIL~eAIdYIK~LQ~QVk  238 (270)
                      ..+..|+++||+||++||+.|.+|++|||.+..     +++|++||..||+||+.||.+++
T Consensus         4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~   64 (65)
T 1an4_A            4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH   64 (65)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            345679999999999999999999999998872     38999999999999999998753

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.55  E-value=4.7e-16  Score=114.44  Aligned_cols=54  Identities=28%  Similarity=0.433  Sum_probs=48.1

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHhcccCCCCC------CCChhhHHHHHHHHHHHHHHHHH
Q 024231          185 THPRSIAERVRRTRISDRIRKLQDLVPNMDK------QTNTADMLEEAVEYVKFLQKQIE  238 (270)
Q Consensus       185 t~~HsiaERrRRerIneri~~Lr~LVP~~~K------q~DKAsIL~eAIdYIK~LQ~QVk  238 (270)
                      +.+|+++||+||++||..|..|+.|||.+.+      +++||+||+.||+||+.||++|+
T Consensus         3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A            3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            4579999999999999999999999997632      36799999999999999998763

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.50  E-value=2.2e-15  Score=114.12  Aligned_cols=53  Identities=28%  Similarity=0.407  Sum_probs=46.9

Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHhcccCCCC---CCCChhhHHHHHHHHHHHHHH
Q 024231          183 CATHPRSIAERVRRTRISDRIRKLQDLVPNMD---KQTNTADMLEEAVEYVKFLQK  235 (270)
Q Consensus       183 ~at~~HsiaERrRRerIneri~~Lr~LVP~~~---Kq~DKAsIL~eAIdYIK~LQ~  235 (270)
                      +++.+|+++||+||++||+.|.+|+.|||.+.   .++|||+||+.||+||+.||.
T Consensus         8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A            8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence            33457999999999999999999999999873   339999999999999999974

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.44  E-value=1.2e-13  Score=105.09  Aligned_cols=55  Identities=29%  Similarity=0.578  Sum_probs=51.2

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhcccCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 024231          187 PRSIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQIEVLHF  242 (270)
Q Consensus       187 ~HsiaERrRRerIneri~~Lr~LVP~~--~Kq~DKAsIL~eAIdYIK~LQ~QVk~Le~  242 (270)
                      .|+.+||+||+.||+.|..|+++||.+  .| ++|++||..||+||+.|+.+++.|+.
T Consensus         5 ~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l~~   61 (83)
T 1nkp_B            5 HHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQ   61 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999999985  45 99999999999999999999998863

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.44  E-value=1.2e-13  Score=104.67  Aligned_cols=57  Identities=26%  Similarity=0.540  Sum_probs=52.2

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHhcccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 024231          186 HPRSIAERVRRTRISDRIRKLQDLVPNMD-KQTNTADMLEEAVEYVKFLQKQIEVLHF  242 (270)
Q Consensus       186 ~~HsiaERrRRerIneri~~Lr~LVP~~~-Kq~DKAsIL~eAIdYIK~LQ~QVk~Le~  242 (270)
                      ..|+.+||+||..||+.|..|+.+||.+. .+++|++||..||+||+.||.+++.|+.
T Consensus        14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~   71 (80)
T 1hlo_A           14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ   71 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35999999999999999999999999873 2399999999999999999999999974

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.41  E-value=2.4e-13  Score=105.64  Aligned_cols=56  Identities=21%  Similarity=0.389  Sum_probs=51.3

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhcccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 024231          187 PRSIAERVRRTRISDRIRKLQDLVPNMD--KQTNTADMLEEAVEYVKFLQKQIEVLHF  242 (270)
Q Consensus       187 ~HsiaERrRRerIneri~~Lr~LVP~~~--Kq~DKAsIL~eAIdYIK~LQ~QVk~Le~  242 (270)
                      .|+.+||+||+.||++|..|+++||.+.  .+++|++||..||+||++|+.+.+.+..
T Consensus         9 ~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~   66 (88)
T 1nkp_A            9 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLIS   66 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999999999999863  3499999999999999999999988764

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.40  E-value=1.8e-13  Score=104.29  Aligned_cols=57  Identities=25%  Similarity=0.331  Sum_probs=49.9

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHhcccCC---CCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 024231          186 HPRSIAERVRRTRISDRIRKLQDLVPN---MDKQTNTADMLEEAVEYVKFLQKQIEVLHF  242 (270)
Q Consensus       186 ~~HsiaERrRRerIneri~~Lr~LVP~---~~Kq~DKAsIL~eAIdYIK~LQ~QVk~Le~  242 (270)
                      ..|+..||+||..||+.|..|+.+||.   .+|.++|.+||..||+||++||+++++++.
T Consensus         7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~   66 (76)
T 3u5v_A            7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL   66 (76)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            469999999999999999999999995   345347999999999999999999998874

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.23  E-value=1.4e-11  Score=94.30  Aligned_cols=56  Identities=23%  Similarity=0.236  Sum_probs=50.8

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhcccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 024231          187 PRSIAERVRRTRISDRIRKLQDLVPNMD--KQTNTADMLEEAVEYVKFLQKQIEVLHF  242 (270)
Q Consensus       187 ~HsiaERrRRerIneri~~Lr~LVP~~~--Kq~DKAsIL~eAIdYIK~LQ~QVk~Le~  242 (270)
                      .|+..||+||..||+.|..|+++||.+.  .+++|++||..|++||+.|+.+.+.|..
T Consensus         4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~   61 (80)
T 1nlw_A            4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH   61 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999999999999653  2389999999999999999999988874

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=99.06  E-value=4.6e-11  Score=89.34  Aligned_cols=52  Identities=17%  Similarity=0.389  Sum_probs=46.8

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHhcccCCC-CCCCChhhHHHHHHHHHHHHHHHH
Q 024231          186 HPRSIAERVRRTRISDRIRKLQDLVPNM-DKQTNTADMLEEAVEYVKFLQKQI  237 (270)
Q Consensus       186 ~~HsiaERrRRerIneri~~Lr~LVP~~-~Kq~DKAsIL~eAIdYIK~LQ~QV  237 (270)
                      ..|+..||+|+..||+.|..|+.+||.. +++++|..+|..||+||++||..+
T Consensus        14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L   66 (68)
T 1mdy_A           14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL   66 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3589999999999999999999999964 345999999999999999999865

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.05  E-value=1.4e-10  Score=106.06  Aligned_cols=56  Identities=14%  Similarity=0.385  Sum_probs=42.6

Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHHHHhcccCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 024231          182 GCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQI  237 (270)
Q Consensus       182 g~at~~HsiaERrRRerIneri~~Lr~LVP~~~Kq~DKAsIL~eAIdYIK~LQ~QV  237 (270)
                      ..++.+|+++||+||++||+.|.+|+.|||....++||++||..||+|||.|+...
T Consensus        10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~   65 (361)
T 4f3l_A           10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT   65 (361)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence            33445799999999999999999999999954445999999999999999998653

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=98.95  E-value=9.7e-10  Score=80.19  Aligned_cols=51  Identities=20%  Similarity=0.313  Sum_probs=46.4

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhcccCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 024231          187 PRSIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQI  237 (270)
Q Consensus       187 ~HsiaERrRRerIneri~~Lr~LVP~~--~Kq~DKAsIL~eAIdYIK~LQ~QV  237 (270)
                      .|+..||+|+..||+.|..|+.+||..  +++++|..+|..||+||++||..+
T Consensus         5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L   57 (60)
T 2ql2_B            5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL   57 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHH
Confidence            378899999999999999999999975  346999999999999999999876

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.93  E-value=3e-10  Score=105.31  Aligned_cols=54  Identities=30%  Similarity=0.351  Sum_probs=47.3

Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHHHHhcccC----CCCCCCChhhHHHHHHHHHHHHHHH
Q 024231          182 GCATHPRSIAERVRRTRISDRIRKLQDLVP----NMDKQTNTADMLEEAVEYVKFLQKQ  236 (270)
Q Consensus       182 g~at~~HsiaERrRRerIneri~~Lr~LVP----~~~Kq~DKAsIL~eAIdYIK~LQ~Q  236 (270)
                      +.++.+|+.+||+||++||+.|.+|+.|||    ...| +||++||..||.|||.|+..
T Consensus        11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k-~dk~~il~~~~~~l~~~~~~   68 (387)
T 4f3l_B           11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRK-LDKLTVLRMAVQHMKTLRGA   68 (387)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSC-CCHHHHHHHHHHHHHHHHCC
T ss_pred             hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccc-cCHHHHHHHHHHHHHHhhcc
Confidence            333457999999999999999999999999    4456 99999999999999999743

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.85  E-value=3.1e-09  Score=82.76  Aligned_cols=49  Identities=31%  Similarity=0.535  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHhcccCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHHhc
Q 024231          195 RRTRISDRIRKLQDLVPNMDK---QTNTADMLEEAVEYVKFLQKQIEVLHFL  243 (270)
Q Consensus       195 RRerIneri~~Lr~LVP~~~K---q~DKAsIL~eAIdYIK~LQ~QVk~Le~l  243 (270)
                      -|..||++|.+|..|||.+..   +++|++||..||+||++||++++.+...
T Consensus         3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~   54 (83)
T 4ath_A            3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL   54 (83)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            389999999999999997642   3899999999999999999988887754

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.47  E-value=4e-08  Score=74.00  Aligned_cols=47  Identities=19%  Similarity=0.340  Sum_probs=41.5

Q ss_pred             cHHHHHHHHHHHHHHHHHhcccCCC--CCCCChhhHHHHHHHHHHHHHH
Q 024231          189 SIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQK  235 (270)
Q Consensus       189 siaERrRRerIneri~~Lr~LVP~~--~Kq~DKAsIL~eAIdYIK~LQ~  235 (270)
                      +.-||+|...||+.|..||.+||..  +++++|..+|..||+||..||.
T Consensus        19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            3448899999999999999999975  3469999999999999999984

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=97.96  E-value=1.6e-05  Score=63.34  Aligned_cols=49  Identities=22%  Similarity=0.418  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHHHhcccCCC--CCCCChhhHHHHHHHHHHHHHHHHHHH
Q 024231          192 ERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQIEVL  240 (270)
Q Consensus       192 ERrRRerIneri~~Lr~LVP~~--~Kq~DKAsIL~eAIdYIK~LQ~QVk~L  240 (270)
                      ||.|=..||+-|..||.+||..  ++++.|..+|..||+||++||..++.-
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~   83 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSH   83 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            5778888999999999999965  456999999999999999999876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	270
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	4e-15
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	2e-13
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	1e-11
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	2e-11
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	5e-11
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	1e-10
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	5e-10
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	2e-09

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (161), Expect = 4e-15
 Identities = 16/46 (34%), Positives = 31/46 (67%)

Query: 196 RTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVLH 241
           R+ I+D+I +L+DLV   D + + + +L +A++Y+K+LQ+    L 
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLR 46

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (150), Expect = 2e-13
 Identities = 19/62 (30%), Positives = 36/62 (58%)

Query: 180 KRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEV 239
            RG      +  E+  R+ I+D+I +L+DLV   + + N + +L +A++Y++FLQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 240 LH 241
           L 
Sbjct: 62  LK 63

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (136), Expect = 1e-11
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 189 SIAERVRRTRISDRIRKLQDLVPNMDKQTN------TADMLEEAVEYVKFLQKQIE 238
             AE+ RR R++  + +L  L+P   KQ N       A  +E A  Y++ LQ+   
Sbjct: 7   KHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 2e-11
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 176 RVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFL 233
            +  KR   TH  ++ ER RR  +      L+D +P +  +++     +L++A  Y+  +
Sbjct: 2   HMNVKR--RTH--NVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSV 57

Query: 234 QKQIEVL 240
           Q + + L
Sbjct: 58  QAEEQKL 64

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.3 bits (133), Expect = 5e-11
 Identities = 10/51 (19%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 189 SIAERVRRTRISDRIRKLQDLVP-NMDKQTNTADMLEEAVEYVKFLQKQIE 238
           ++ ER R +++++    L+     N +++    ++L  A+ Y++ LQ  + 
Sbjct: 17  TMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (131), Expect = 1e-10
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 188 RSIAERVRRTRISDRIRKLQDLV-PNMDKQTNTADMLEEAVEYVKFLQKQIEVLH 241
            +  ER RR  I D    L+D V     ++ + A +L++A EY+++++++     
Sbjct: 6   HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQ 60

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (126), Expect = 5e-10
 Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 189 SIAERVRRTRISDRIRKLQDLVPNM-----DKQTNTADMLEEAVEYVKFLQKQ 236
           +  ER RR +I++ I +L  ++P+          +   +L +A +Y++ L++ 
Sbjct: 10  NEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQS 62

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (122), Expect = 2e-09
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 189 SIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQIEVL 240
           +  E+ RR  +   + KL+ LVP      +  T  +L +A  ++K L+      
Sbjct: 6   NEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKA 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	270
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.5
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.5
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.4
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.4

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.8e-15  Score=110.63  Aligned_cols=57  Identities=30%  Similarity=0.521  Sum_probs=53.3

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHhcccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 024231          186 HPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVLHF  242 (270)
Q Consensus       186 ~~HsiaERrRRerIneri~~Lr~LVP~~~Kq~DKAsIL~eAIdYIK~LQ~QVk~Le~  242 (270)
                      ..|+.+||+||++||+.|..|++|||++..+++|++||..||+||++|+.+++.|..
T Consensus         8 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~   64 (80)
T d1am9a_           8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ   64 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999999999876699999999999999999999998863

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=3.5e-15  Score=107.19  Aligned_cols=53  Identities=26%  Similarity=0.453  Sum_probs=47.2

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHhcccCCC------CCCCChhhHHHHHHHHHHHHHHHH
Q 024231          185 THPRSIAERVRRTRISDRIRKLQDLVPNM------DKQTNTADMLEEAVEYVKFLQKQI  237 (270)
Q Consensus       185 t~~HsiaERrRRerIneri~~Lr~LVP~~------~Kq~DKAsIL~eAIdYIK~LQ~QV  237 (270)
                      +..|+++||+||++||+.|..|++|||.+      ..+++|++||+.||+||++||++|
T Consensus         3 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            34699999999999999999999999952      334899999999999999999875

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=1.9e-15  Score=110.47  Aligned_cols=53  Identities=17%  Similarity=0.366  Sum_probs=48.2

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHhcccCCCC-CCCChhhHHHHHHHHHHHHHHHHH
Q 024231          186 HPRSIAERVRRTRISDRIRKLQDLVPNMD-KQTNTADMLEEAVEYVKFLQKQIE  238 (270)
Q Consensus       186 ~~HsiaERrRRerIneri~~Lr~LVP~~~-Kq~DKAsIL~eAIdYIK~LQ~QVk  238 (270)
                      ..|++.||+||++||+.|..|++|||.+. ++++|++||..||+||++||++|+
T Consensus        14 ~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            35999999999999999999999999865 348999999999999999998764

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=7e-14  Score=103.52  Aligned_cols=56  Identities=23%  Similarity=0.236  Sum_probs=51.0

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhcccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 024231          187 PRSIAERVRRTRISDRIRKLQDLVPNMD--KQTNTADMLEEAVEYVKFLQKQIEVLHF  242 (270)
Q Consensus       187 ~HsiaERrRRerIneri~~Lr~LVP~~~--Kq~DKAsIL~eAIdYIK~LQ~QVk~Le~  242 (270)
                      .|+.+||+||++||+.|.+|++|||.+.  .+++|++||..||+||++|+.+++.|..
T Consensus         4 ~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~   61 (79)
T d1nlwa_           4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH   61 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999999999999754  2389999999999999999999998863

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.4e-14  Score=102.36  Aligned_cols=47  Identities=34%  Similarity=0.589  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHhcccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 024231          196 RTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVLHF  242 (270)
Q Consensus       196 RerIneri~~Lr~LVP~~~Kq~DKAsIL~eAIdYIK~LQ~QVk~Le~  242 (270)
                      |++||++|.+|++|||++.+++|||+||.+||+||++||.+++.|+.
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~   47 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQ   47 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999876699999999999999999999999973

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=9.5e-14  Score=103.66  Aligned_cols=56  Identities=27%  Similarity=0.554  Sum_probs=51.2

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhcccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 024231          187 PRSIAERVRRTRISDRIRKLQDLVPNMD-KQTNTADMLEEAVEYVKFLQKQIEVLHF  242 (270)
Q Consensus       187 ~HsiaERrRRerIneri~~Lr~LVP~~~-Kq~DKAsIL~eAIdYIK~LQ~QVk~Le~  242 (270)
                      .|+.+||+||++||+.|..|++|||.+. ++++|++||..||+||++|+.+++.|..
T Consensus         5 ~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~   61 (83)
T d1nkpb_           5 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ   61 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999999999999753 3489999999999999999999988874

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.6e-13  Score=103.47  Aligned_cols=56  Identities=21%  Similarity=0.389  Sum_probs=51.2

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhcccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 024231          187 PRSIAERVRRTRISDRIRKLQDLVPNMD--KQTNTADMLEEAVEYVKFLQKQIEVLHF  242 (270)
Q Consensus       187 ~HsiaERrRRerIneri~~Lr~LVP~~~--Kq~DKAsIL~eAIdYIK~LQ~QVk~Le~  242 (270)
                      .|+.+||+||++||+.|..|+++||++.  .+++|++||..||+||++|+.+++.|..
T Consensus         9 ~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~   66 (88)
T d1nkpa_           9 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLIS   66 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999999999999753  2389999999999999999999998864

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.8e-14  Score=101.72  Aligned_cols=52  Identities=23%  Similarity=0.452  Sum_probs=46.8

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHhcccCCCC-----CCCChhhHHHHHHHHHHHHHHHH
Q 024231          186 HPRSIAERVRRTRISDRIRKLQDLVPNMD-----KQTNTADMLEEAVEYVKFLQKQI  237 (270)
Q Consensus       186 ~~HsiaERrRRerIneri~~Lr~LVP~~~-----Kq~DKAsIL~eAIdYIK~LQ~QV  237 (270)
                      ..|+.+||+||++||+.|.+|++|||.+.     .+++|++||..||+||++||++.
T Consensus         7 ~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_           7 AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            46999999999999999999999999753     14899999999999999999764