Citrus Sinensis ID: 024241

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTFTGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFQARVGRRNAGM
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccEEEEEEcHHHHHHHcccHHHHHHHHHHHHcccEEEcccEEEEEEEEccHHHHHHHHHHHHHHccccccccccccEEEEcccEEEEEcccccccccccccccccEEEEEEccccc
cccccHHHHHHHHHHcccccccccccccEEEEEccccccHHHHHHHcccccccccccHHHHcHHHccccccHccccHHHHcccHHHHcHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccHHcccccEEEccccEEEEEccccEEEHcHHHHHHHHcccHHHHHHHHHHHHccccccccccEEEEEccccHHHHHHHHHHHHHHHHEcccccccccEEEcccEEEEEEEccccccccHHHHHcccEEEcccHHccc
mtdenqvdvkdevaelapfdptkkkkkkkvviqdpsddsvDKLAEKTETLSVSEGLESTFtglkkkkkkpvessllndeigdagddldghvgeddeadgsggprqrypwegsdrdYEYEELLGRVFNILRennpelagdrrrtvmrppqvlregtkkTVFVNFMDLCKTMHRQPDHVMTFLLAElgtsgsldgqqrlvvkgrfapknfEGILRRYVNEYVIClgckspdtilsKENRLFFLrcekcgsgrsvapikAGFQARVGRRNAGM
mtdenqvdvkdevaelapfdptkkkkkkkvviqdpsddsvdklaektetlsvseglestftglkkkkkkpvessllndeigdagddldghvgeddeadgsggprqrypwegsDRDYEYEELLGRVFNILRennpelagdrrrtvmrppqvlregtkktVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKcgsgrsvapikagfqarvgrrnagm
MTDENQVDVKDEVAELAPFDPTkkkkkkkVVIQDPSDDSVDKLAEKTETLSVSEGLESTFTGLkkkkkkPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFQARVGRRNAGM
******************************************************************************************************************DYEYEELLGRVFNILRE*******************LREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAG************
**************************************************************************************************************GSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAP*KAG*****GR*****
********VKDEVAELAPFDP********************KLAEKTETLSVSEGLESTF*************SLLNDEIGDAGDDLDGHVG************QRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFQARVGRRNAGM
*******DVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLA******************************************************************GSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKA**Q*RVGR*****
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MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTFTGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFQARVGRRNAGM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query270 2.2.26 [Sep-21-2011]
P55871271 Eukaryotic translation in N/A no 0.996 0.992 0.822 1e-119
O24473270 Eukaryotic translation in N/A no 0.988 0.988 0.785 1e-111
Q41969268 Eukaryotic translation in yes no 0.981 0.988 0.767 1e-109
Q5E9D0333 Eukaryotic translation in yes no 0.625 0.507 0.631 6e-61
Q99L45331 Eukaryotic translation in yes no 0.644 0.525 0.605 8e-61
P41035333 Eukaryotic translation in yes no 0.625 0.507 0.625 2e-60
P20042333 Eukaryotic translation in yes no 0.625 0.507 0.625 2e-60
Q5R4T9333 Eukaryotic translation in yes no 0.625 0.507 0.619 5e-60
P41375312 Eukaryotic translation in yes no 0.688 0.596 0.572 9e-60
P56329321 Probable eukaryotic trans yes no 0.692 0.582 0.553 3e-57
>sp|P55871|IF2B_MALDO Eukaryotic translation initiation factor 2 subunit beta OS=Malus domestica PE=2 SV=2 Back     alignment and function desciption
 Score =  429 bits (1102), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/270 (82%), Positives = 239/270 (88%), Gaps = 1/270 (0%)

Query: 1   MTDENQVDVKDEV-AELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLEST 59
           M D+NQ +VKDEV A++APFDPTKKKKKK+VVIQD +DDSV KLAEK E  + SEG EST
Sbjct: 1   MADDNQNEVKDEVVADIAPFDPTKKKKKKEVVIQDTTDDSVGKLAEKAEACTASEGQEST 60

Query: 60  FTGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYE 119
           F GLKKKKKKP+E+S+LN+E GDA +DL+   GED+E +G       YPWEGSDRDY YE
Sbjct: 61  FAGLKKKKKKPIETSILNEESGDAVEDLNERTGEDEEGEGIVLETPSYPWEGSDRDYTYE 120

Query: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMT 179
           ELL RVF ILRENNP+LAGDRRRTVMRPPQVLREGTKK VFVNFMDLCKTMHRQPDHVM 
Sbjct: 121 ELLDRVFTILRENNPDLAGDRRRTVMRPPQVLREGTKKAVFVNFMDLCKTMHRQPDHVMA 180

Query: 180 FLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLF 239
           FLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGC+SPDTILSKENRLF
Sbjct: 181 FLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCQSPDTILSKENRLF 240

Query: 240 FLRCEKCGSGRSVAPIKAGFQARVGRRNAG 269
           FLRCEKCGSGRSVAP KAGF ARVGRRNAG
Sbjct: 241 FLRCEKCGSGRSVAPNKAGFMARVGRRNAG 270
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.
Malus domestica (taxid: 3750)
>sp|O24473|IF2B_WHEAT Eukaryotic translation initiation factor 2 subunit beta OS=Triticum aestivum PE=1 SV=1 Back     alignment and function description
>sp|Q41969|IF2B_ARATH Eukaryotic translation initiation factor 2 subunit beta OS=Arabidopsis thaliana GN=EMB1401 PE=2 SV=3 Back     alignment and function description
>sp|Q5E9D0|IF2B_BOVIN Eukaryotic translation initiation factor 2 subunit 2 OS=Bos taurus GN=EIF2S2 PE=2 SV=1 Back     alignment and function description
>sp|Q99L45|IF2B_MOUSE Eukaryotic translation initiation factor 2 subunit 2 OS=Mus musculus GN=Eif2s2 PE=1 SV=1 Back     alignment and function description
>sp|P41035|IF2B_RABIT Eukaryotic translation initiation factor 2 subunit 2 OS=Oryctolagus cuniculus GN=EIF2S2 PE=1 SV=1 Back     alignment and function description
>sp|P20042|IF2B_HUMAN Eukaryotic translation initiation factor 2 subunit 2 OS=Homo sapiens GN=EIF2S2 PE=1 SV=2 Back     alignment and function description
>sp|Q5R4T9|IF2B_PONAB Eukaryotic translation initiation factor 2 subunit 2 OS=Pongo abelii GN=EIF2S2 PE=2 SV=1 Back     alignment and function description
>sp|P41375|IF2B_DROME Eukaryotic translation initiation factor 2 subunit 2 OS=Drosophila melanogaster GN=eIF-2beta PE=1 SV=1 Back     alignment and function description
>sp|P56329|IF2B_SCHPO Probable eukaryotic translation initiation factor 2 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif212 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query270
297745750290 unnamed protein product [Vitis vinifera] 0.992 0.924 0.873 1e-126
225434323269 PREDICTED: eukaryotic translation initia 0.992 0.996 0.873 1e-126
224126981270 predicted protein [Populus trichocarpa] 0.992 0.992 0.851 1e-124
118488478270 unknown [Populus trichocarpa] 0.992 0.992 0.848 1e-124
449529178270 PREDICTED: eukaryotic translation initia 0.992 0.992 0.840 1e-120
356499030354 PREDICTED: eukaryotic translation initia 0.988 0.754 0.847 1e-120
255648391268 unknown [Glycine max] 0.988 0.996 0.843 1e-119
449443396269 PREDICTED: eukaryotic translation initia 0.988 0.992 0.837 1e-119
356553184268 PREDICTED: eukaryotic translation initia 0.988 0.996 0.843 1e-119
255637249268 unknown [Glycine max] 0.988 0.996 0.840 1e-118
>gi|297745750|emb|CBI15806.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/269 (87%), Positives = 252/269 (93%), Gaps = 1/269 (0%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTF 60
           M DENQ +VKDEVAELAPFDPTKKKKKKKVVIQDP+DDSVDKLAEKTE+LSVSEG+E+TF
Sbjct: 22  MADENQNEVKDEVAELAPFDPTKKKKKKKVVIQDPADDSVDKLAEKTESLSVSEGVENTF 81

Query: 61  TGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEE 120
           +G+KKKKKKPVE+ +LND+ GD  +DLD H GED+E +G    + RYPWEGSDRDY+YEE
Sbjct: 82  SGMKKKKKKPVETDILNDDGGDGKEDLDDHNGEDEEGEGIV-LQPRYPWEGSDRDYKYEE 140

Query: 121 LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTF 180
           LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVM F
Sbjct: 141 LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAF 200

Query: 181 LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFF 240
           LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRY+NEYVICLGCKSPDTILSKENRLFF
Sbjct: 201 LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYINEYVICLGCKSPDTILSKENRLFF 260

Query: 241 LRCEKCGSGRSVAPIKAGFQARVGRRNAG 269
           LRCE+CGSGRSVAPIKAGF ARVGRRN G
Sbjct: 261 LRCEQCGSGRSVAPIKAGFVARVGRRNTG 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225434323|ref|XP_002265847.1| PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Vitis vinifera] Back     alignment and taxonomy information
>gi|224126981|ref|XP_002319977.1| predicted protein [Populus trichocarpa] gi|222858353|gb|EEE95900.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118488478|gb|ABK96053.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449529178|ref|XP_004171578.1| PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356499030|ref|XP_003518347.1| PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|255648391|gb|ACU24646.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449443396|ref|XP_004139463.1| PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356553184|ref|XP_003544938.1| PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|255637249|gb|ACU18955.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query270
TAIR|locus:2147162268 EIF2 BETA "eukaryotic translat 0.981 0.988 0.719 1.9e-99
UNIPROTKB|Q5E9D0333 EIF2S2 "Eukaryotic translation 0.692 0.561 0.586 3.3e-56
UNIPROTKB|F1PZ47333 EIF2S2 "Uncharacterized protei 0.692 0.561 0.586 5.3e-56
UNIPROTKB|P20042333 EIF2S2 "Eukaryotic translation 0.692 0.561 0.586 5.3e-56
UNIPROTKB|F1S4Y8328 EIF2S2 "Uncharacterized protei 0.692 0.570 0.586 5.3e-56
UNIPROTKB|P41035333 EIF2S2 "Eukaryotic translation 0.692 0.561 0.586 5.3e-56
UNIPROTKB|Q4R5G5333 Q4R5G5 "Macaca fascicularis br 0.692 0.561 0.586 5.3e-56
RGD|735192333 Eif2s2 "eukaryotic translation 0.692 0.561 0.586 5.3e-56
MGI|MGI:1914454331 Eif2s2 "eukaryotic translation 0.688 0.561 0.578 1.8e-55
ZFIN|ZDB-GENE-030131-3085327 eif2s2 "eukaryotic translation 0.681 0.562 0.592 3.7e-55
TAIR|locus:2147162 EIF2 BETA "eukaryotic translation initiation factor 2 beta subunit" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 987 (352.5 bits), Expect = 1.9e-99, P = 1.9e-99
 Identities = 192/267 (71%), Positives = 219/267 (82%)

Query:     1 MTDENQVDVKDEVAELAPFDPTXXXXXXXVVIQDPSDDSVDKL-AEKTETLSVSEGLEST 59
             M DE   ++++E  +LAPFDP+       VVIQ+P +D  +    EK+++L V++GLES+
Sbjct:     1 MADEIN-EIREEQEQLAPFDPSKKKKKKKVVIQEPVEDLAESSQTEKSDSLPVNDGLESS 59

Query:    60 FTGLXXXXXXPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYE 119
             FTG+      P ESSLLN+E  DAG+DLD    ++ E +     +QRYPWEGS+RDY Y+
Sbjct:    60 FTGMKKKKKKPTESSLLNNESVDAGEDLDEIANDEQEGEEGIVLQQRYPWEGSERDYIYD 119

Query:   120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMT 179
             ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVM 
Sbjct:   120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMQ 179

Query:   180 FLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLF 239
             +LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRY+ +YVICLGCKSPDTILSKENRLF
Sbjct:   180 YLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYITDYVICLGCKSPDTILSKENRLF 239

Query:   240 FLRCEKCGSGRSVAPIKAGFQARVGRR 266
             FLRCEKCGS RSVAPIK GF ARV RR
Sbjct:   240 FLRCEKCGSQRSVAPIKTGFVARVSRR 266
GO:0003743 "translation initiation factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006413 "translational initiation" evidence=IEA;ISS
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0005886 "plasma membrane" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
UNIPROTKB|Q5E9D0 EIF2S2 "Eukaryotic translation initiation factor 2 subunit 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PZ47 EIF2S2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P20042 EIF2S2 "Eukaryotic translation initiation factor 2 subunit 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S4Y8 EIF2S2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P41035 EIF2S2 "Eukaryotic translation initiation factor 2 subunit 2" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R5G5 Q4R5G5 "Macaca fascicularis brain cDNA clone: QorA-11002, similar to human eukaryotic translation initiation factor 2, subunit 2beta, 38kDa (EIF2S2), mRNA, RefSeq: NM_003908.2" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
RGD|735192 Eif2s2 "eukaryotic translation initiation factor 2, subunit 2 beta" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1914454 Eif2s2 "eukaryotic translation initiation factor 2, subunit 2 (beta)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3085 eif2s2 "eukaryotic translation initiation factor 2, subunit 2 beta" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P09064IF2B_YEASTNo assigned EC number0.45010.90370.8561yesno
Q41969IF2B_ARATHNo assigned EC number0.76770.98140.9888yesno
P55871IF2B_MALDONo assigned EC number0.82220.99620.9926N/Ano
Q21230IF2B_CAEELNo assigned EC number0.50290.61850.668yesno
O24473IF2B_WHEATNo assigned EC number0.78590.98880.9888N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00023929001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (269 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00034005001
SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (356 aa)
   •••• 0.976
GSVIVG00036700001
SubName- Full=Chromosome chr15 scaffold_82, whole genome shotgun sequence; (667 aa)
   •••• 0.960
GSVIVG00031027001
SubName- Full=Chromosome undetermined scaffold_53, whole genome shotgun sequence; (417 aa)
   •••• 0.956
GSVIVG00030682001
SubName- Full=Putative uncharacterized protein (Chromosome chr1 scaffold_5, whole genome shotgu [...] (326 aa)
   • •• 0.955
GSVIVG00025658001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (437 aa)
   • •• 0.935
GSVIVG00022664001
SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (977 aa)
   •••• 0.931
GSVIVG00033547001
SubName- Full=Chromosome chr5 scaffold_67, whole genome shotgun sequence; (333 aa)
   • •• 0.921
GSVIVG00012124001
SubName- Full=Chromosome undetermined scaffold_3017, whole genome shotgun sequence; Flags- Frag [...] (340 aa)
   • •  0.908
GSVIVG00018281001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (285 aa)
   • •• 0.901
GSVIVG00022833001
SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (220 aa)
   • •  0.894

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query270
smart00653110 smart00653, eIF2B_5, domain present in translation 6e-67
pfam01873125 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5 1e-62
COG1601151 COG1601, GCD7, Translation initiation factor 2, be 1e-42
PRK03988138 PRK03988, PRK03988, translation initiation factor 3e-42
PRK12336201 PRK12336, PRK12336, translation initiation factor 4e-38
TIGR00311133 TIGR00311, aIF-2beta, translation initiation facto 6e-26
>gnl|CDD|214764 smart00653, eIF2B_5, domain present in translation initiation factor eIF2B and eIF5 Back     alignment and domain information 
 Score =  202 bits (517), Expect = 6e-67
 Identities = 69/109 (63%), Positives = 82/109 (75%)

Query: 140 RRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVV 199
             R  M PPQVLREG  KTV VNF D+ K ++R PDHV+ FLLAELGT GS+DG+ RL+V
Sbjct: 1   FYRFKMPPPQVLREGKGKTVIVNFADIAKALNRPPDHVLKFLLAELGTQGSIDGKGRLIV 60

Query: 200 KGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGS 248
            GRF PK  + +LRRY+ EYV+C  C SPDT L KENRLFFL+CE CG+
Sbjct: 61  NGRFTPKKLQDLLRRYIKEYVLCPECGSPDTELIKENRLFFLKCEACGA 109

Length = 110
>gnl|CDD|216754 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5 Back     alignment and domain information
>gnl|CDD|224517 COG1601, GCD7, Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235189 PRK03988, PRK03988, translation initiation factor IF-2 subunit beta; Validated Back     alignment and domain information
>gnl|CDD|183451 PRK12336, PRK12336, translation initiation factor IF-2 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|129411 TIGR00311, aIF-2beta, translation initiation factor aIF-2, beta subunit, putative Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 270
KOG2768231 consensus Translation initiation factor 2, beta su 100.0
PRK03988138 translation initiation factor IF-2 subunit beta; V 100.0
TIGR00311133 aIF-2beta translation initiation factor aIF-2, bet 100.0
PRK12336201 translation initiation factor IF-2 subunit beta; P 100.0
smart00653110 eIF2B_5 domain present in translation initiation f 100.0
PF01873125 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: 100.0
COG1601151 GCD7 Translation initiation factor 2, beta subunit 100.0
KOG2767 400 consensus Translation initiation factor 5 (eIF-5) 99.97
PF0952671 DUF2387: Probable metal-binding protein (DUF2387); 95.4
TIGR0244359 conserved hypothetical metal-binding protein. Memb 95.24
PF0125383 SUI1: Translation initiation factor SUI1; InterPro 93.62
PF1435461 Lar_restr_allev: Restriction alleviation protein L 92.79
PRK0971064 lar restriction alleviation and modification prote 92.56
PF0109639 TFIIS_C: Transcription factor S-II (TFIIS); InterP 90.94
smart0044040 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo 90.05
PF1267749 DUF3797: Domain of unknown function (DUF3797); Int 89.49
TIGR0365553 anti_R_Lar restriction alleviation protein, Lar fa 89.08
PRK0093999 translation initiation factor Sui1; Reviewed 88.8
cd0047477 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation fac 88.33
PHA02998195 RNA polymerase subunit; Provisional 88.17
PF1371937 zinc_ribbon_5: zinc-ribbon domain 87.43
COG4888104 Uncharacterized Zn ribbon-containing protein [Gene 86.96
PF14353128 CpXC: CpXC protein 86.72
TIGR01158101 SUI1_rel translation initation factor SUI1, putati 86.04
PF0827143 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013 84.9
PF04216290 FdhE: Protein involved in formate dehydrogenase fo 84.34
PRK1489299 putative transcription elongation factor Elf1; Pro 83.57
COG205167 RPS27A Ribosomal protein S27E [Translation, riboso 82.36
PF1480334 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C. 81.89
PRK03564309 formate dehydrogenase accessory protein FdhE; Prov 81.34
PF0512981 Elf1: Transcription elongation factor Elf1 like; I 80.63
PF1133146 DUF3133: Protein of unknown function (DUF3133); In 80.47
TIGR01159173 DRP1 density-regulated protein DRP1. This protein 80.44
>KOG2768 consensus Translation initiation factor 2, beta subunit (eIF-2beta) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-71  Score=492.98  Aligned_cols=215  Identities=65%  Similarity=1.000  Sum_probs=181.8

Q ss_pred             cccccCccccccccccccCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHH
Q 024241           50 LSVSEGLESTFTGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNIL  129 (270)
Q Consensus        50 ~~~~~~~~~~~~~~KKKKKk~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YeeLL~R~~~~l  129 (270)
                      .+++++++..+.++||||||++....++++...+.+..++...++.+.   ...++.++|.|++++|.|++||.|+|++|
T Consensus        16 ~~~~~~l~~~~~~kKKKKkk~k~~s~~ee~~~~~~e~~~e~~~~~~e~---~~~~~~~~~~g~e~dy~Y~ElL~rvf~il   92 (231)
T KOG2768|consen   16 DEASERLDFLSLKKKKKKKKSKSLSALEEEDVNAGEFADEDKDPDKEV---RQNQQGVSWVGSEPDYTYYELLSRVFNIL   92 (231)
T ss_pred             cchhhcccccccccccccCCCCchhhhHHHHHhccchhhhccChhhcc---ccccccccccccCCCccHHHHHHHHHHHH
Confidence            344555555556666666666544433333222233222221111111   13334499999999999999999999999


Q ss_pred             hhcCCCcccCcceeecCCCeEEEeCceeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeecCCceEEEEeecChHHHH
Q 024241          130 RENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFE  209 (270)
Q Consensus       130 ~~~np~~~~~~~R~~mP~p~V~~eG~kKTvi~Nf~dI~k~L~R~p~hv~kyl~~ELGt~gsid~~~rlii~G~f~~k~ie  209 (270)
                      +++|||++|++.+|.|+||||.|+| +||+|+||+|||+.|||+|+||++||++||||+||||+++||||+|+|++++||
T Consensus        93 reknpe~aGe~~k~v~~PPqvlReg-kkT~f~Nf~Dick~mhR~pdHv~~FLlAELgTsGSidg~~rLviKGrfq~kq~e  171 (231)
T KOG2768|consen   93 REKNPELAGEKRKFVMKPPQVLREG-KKTVFVNFADICKTMHRSPDHVMQFLLAELGTSGSIDGQQRLVIKGRFQQKQFE  171 (231)
T ss_pred             HhcCchhcccccceeeCCHHHHhhc-cceeeeeHHHHHHHhccChHHHHHHHHHHhccccccCCCceEEEeccccHHHHH
Confidence            9999999999999999999999999 999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccceEeeCCCCCCcceEEEcCcEEEeEeccCCCcccccccccceEEEeeeccC
Q 024241          210 GILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFQARVGRRNA  268 (270)
Q Consensus       210 ~~L~~YI~eYVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~V~~ik~gf~a~~~kr~~  268 (270)
                      ++||+||.+||+|.+|+||||.|.++||||||+|..||++++|.+|++||+|.+|+|+.
T Consensus       172 ~VLRrYI~eyV~C~~CkSpdt~L~kenRLfFL~C~~cgs~~sv~~Iktgf~A~~~kr~~  230 (231)
T KOG2768|consen  172 NVLRRYIKEYVTCKTCKSPDTILQKENRLFFLRCEKCGSRCSVASIKTGFQAVVGKRAM  230 (231)
T ss_pred             HHHHHHHHHheEeeecCChhHHhhhhcceEEEEecCCCCeeeeeeeecccEEecccccc
Confidence            99999999999999999999999999999999999999999999999999999999975

>PRK03988 translation initiation factor IF-2 subunit beta; Validated Back     alignment and domain information
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative Back     alignment and domain information
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional Back     alignment and domain information
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5 Back     alignment and domain information
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology [] Back     alignment and domain information
>COG1601 GCD7 Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2767 consensus Translation initiation factor 5 (eIF-5) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC Back     alignment and domain information
>TIGR02443 conserved hypothetical metal-binding protein Back     alignment and domain information
>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation [] Back     alignment and domain information
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar Back     alignment and domain information
>PRK09710 lar restriction alleviation and modification protein; Reviewed Back     alignment and domain information
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00440 ZnF_C2C2 C2C2 Zinc finger Back     alignment and domain information
>PF12677 DUF3797: Domain of unknown function (DUF3797); InterPro: IPR024256 This presumed domain is functionally uncharacterised Back     alignment and domain information
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family Back     alignment and domain information
>PRK00939 translation initiation factor Sui1; Reviewed Back     alignment and domain information
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation Back     alignment and domain information
>PHA02998 RNA polymerase subunit; Provisional Back     alignment and domain information
>PF13719 zinc_ribbon_5: zinc-ribbon domain Back     alignment and domain information
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only] Back     alignment and domain information
>PF14353 CpXC: CpXC protein Back     alignment and domain information
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic Back     alignment and domain information
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex [] Back     alignment and domain information
>PRK14892 putative transcription elongation factor Elf1; Provisional Back     alignment and domain information
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C Back     alignment and domain information
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional Back     alignment and domain information
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines Back     alignment and domain information
>PF11331 DUF3133: Protein of unknown function (DUF3133); InterPro: IPR021480 This eukaryotic family of proteins has no known function Back     alignment and domain information
>TIGR01159 DRP1 density-regulated protein DRP1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query270
2d74_B148 Crystal Structure Of Translation Initiation Factor 2e-22
1nee_A138 Structure Of Archaeal Translation Factor Aif2beta F 5e-17
2qmu_C138 Structure Of An Archaeal Heterotrimeric Initiation 5e-17
2nxu_A146 Atomic Structure Of Translation Initiation Factor A 6e-17
3cw2_K139 Crystal Structure Of The Intact Archaeal Translatio 6e-17
2g2k_A170 Nmr Structure Of An N-Terminal Fragment Of The Euka 3e-06
2e9h_A157 Solution Structure Of The Eif-5_eif-2b Domain From 5e-06
>pdb|2D74|B Chain B, Crystal Structure Of Translation Initiation Factor Aif2betagamma Heterodimer Length = 148 Back     alignment and structure 
Iteration: 1

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 82/133 (61%), Gaps = 5/133 (3%)
Query: 116 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPD 175
           Y+YE+LL + +  L EN   +   + R  +    V  EG K T+  NF D+   ++R P 
Sbjct: 6   YDYEKLLEKAYQELPEN---VKHHKSRFEVPGALVTIEGNK-TIIENFKDIADALNRDPQ 61
Query: 176 HVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKE 235
           H++ FLL E+ T+G+L+G+ R+V++GRF P      L++Y+ EYVIC  C SPDT + K 
Sbjct: 62  HLLKFLLREIATAGTLEGR-RVVLQGRFTPYLIANKLKKYIKEYVICPVCGSPDTKIIKR 120
Query: 236 NRLFFLRCEKCGS 248
           +R  FL+CE CG+
Sbjct: 121 DRFHFLKCEACGA 133
>pdb|1NEE|A Chain A, Structure Of Archaeal Translation Factor Aif2beta From Methanobacterium Thermoautrophicum Length = 138 Back     alignment and structure
>pdb|2QMU|C Chain C, Structure Of An Archaeal Heterotrimeric Initiation Factor 2 Reveals A Nucleotide State Between The Gtp And The Gdp States Length = 138 Back     alignment and structure
>pdb|2NXU|A Chain A, Atomic Structure Of Translation Initiation Factor Aif2 Beta-Subunit From Archaebacteria Sulfolobus Solfataricus: High Resolution Nmr In Solution Length = 146 Back     alignment and structure
>pdb|3CW2|K Chain K, Crystal Structure Of The Intact Archaeal Translation Initiation Factor 2 From Sulfolobus Solfataricus . Length = 139 Back     alignment and structure
>pdb|2G2K|A Chain A, Nmr Structure Of An N-Terminal Fragment Of The Eukaryotic Initiation Factor 5 (Eif5) Length = 170 Back     alignment and structure
>pdb|2E9H|A Chain A, Solution Structure Of The Eif-5_eif-2b Domain From Human Eukaryotic Translation Initiation Factor 5 Length = 157 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query270
3cw2_K139 Translation initiation factor 2 subunit beta; AIF2 4e-62
2d74_B148 Translation initiation factor 2 beta subunit; prot 1e-59
1nee_A138 EIF-2-beta, probable translation initiation factor 4e-56
2e9h_A157 EIF-5, eukaryotic translation initiation factor 5; 3e-44
2g2k_A170 EIF-5, eukaryotic translation initiation factor 5; 8e-41
1k8b_A52 EIF-2-beta, probable translation initiation factor 7e-23
1k81_A36 EIF-2-beta, probable translation initiation factor 3e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C* Length = 139 Back     alignment and structure
 Score =  191 bits (486), Expect = 4e-62
 Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 5/143 (3%)

Query: 113 DRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHR 172
             + EY E+L R+++ L E        +  T   P  ++      T+  NF + C  + R
Sbjct: 2   SSEKEYVEMLDRLYSKLPEKG-----RKEGTQSLPNMIILNIGNTTIIRNFAEYCDRIRR 56

Query: 173 QPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTIL 232
           +    M +LL EL   G++D +  LV++G+F+ +    ++ R++  YV C  CKS DTIL
Sbjct: 57  EDKICMKYLLKELAAPGNVDDKGELVIQGKFSSQVINTLMERFLKAYVECSTCKSLDTIL 116

Query: 233 SKENRLFFLRCEKCGSGRSVAPI 255
            KE + +++ C  CG+   V P+
Sbjct: 117 KKEKKSWYIVCLACGAQTPVKPL 139
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B* Length = 148 Back     alignment and structure
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1 Length = 138 Back     alignment and structure
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 157 Back     alignment and structure
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens} Length = 170 Back     alignment and structure
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1 Length = 52 Back     alignment and structure
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1 Length = 36 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query270
1nee_A138 EIF-2-beta, probable translation initiation factor 100.0
2d74_B148 Translation initiation factor 2 beta subunit; prot 100.0
3cw2_K139 Translation initiation factor 2 subunit beta; AIF2 100.0
2e9h_A157 EIF-5, eukaryotic translation initiation factor 5; 100.0
2g2k_A170 EIF-5, eukaryotic translation initiation factor 5; 100.0
1k8b_A52 EIF-2-beta, probable translation initiation factor 99.87
1k81_A36 EIF-2-beta, probable translation initiation factor 99.56
1pft_A50 TFIIB, PFTFIIBN; N-terminal domain, transcription 90.35
1tfi_A50 Transcriptional elongation factor SII; transcripti 89.09
1qyp_A57 RNA polymerase II; transcription, RPB9, Zn ribbon, 89.01
2fiy_A309 Protein FDHE homolog; FDHE protein, structural gen 88.76
2pk7_A69 Uncharacterized protein; NESG, PLR1, putative tetr 86.71
2ogh_A108 Eukaryotic translation initiation factor EIF-1; al 86.04
1dl6_A58 Transcription factor II B (TFIIB); zinc ribbon, ge 82.58
2js4_A70 UPF0434 protein BB2007; NESG, northeast structural 81.26
1wii_A85 Hypothetical UPF0222 protein MGC4549; domain of un 81.19
2hf1_A68 Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A 80.94
4bbr_M 345 Transcription initiation factor IIB; RNA polymeras 80.39
1pqv_S309 STP-alpha, transcription elongation factor S-II, D 80.32
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1 Back     alignment and structure
Probab=100.00  E-value=4.7e-57  Score=379.13  Aligned_cols=135  Identities=33%  Similarity=0.671  Sum_probs=129.3

Q ss_pred             CccHHHHHHHHHHHHhhcCCCcccCcceeecCCCeEEEeCceeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeecCC
Q 024241          115 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQ  194 (270)
Q Consensus       115 ~~~YeeLL~R~~~~l~~~np~~~~~~~R~~mP~p~V~~eG~kKTvi~Nf~dI~k~L~R~p~hv~kyl~~ELGt~gsid~~  194 (270)
                      .|+|++||+|||++|    |+..++.+||+||+|+|.++| +||+|+||.|||++|||+|+||++||++||||+|+|| +
T Consensus         4 ~~~Y~~lL~R~~~~l----~~~~~~~~R~~mp~~~v~~eG-~kTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id-~   77 (138)
T 1nee_A            4 MDDYEKLLERAIDQL----PPEVFETKRFEVPKAYSVIQG-NRTFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE-G   77 (138)
T ss_dssp             CCSSCCCCCSSSSSS----CTTSCCCCCCCCSCCCCCEET-TEEEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB-T
T ss_pred             ccCHHHHHHHHHHHc----ccccCCccceecCCCeEEEEC-CcEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-C
Confidence            689999999999999    554466789999999999999 5799999999999999999999999999999999999 7


Q ss_pred             ceEEEEeecChHHHHHHHHHhccceEeeCCCCCCcceEEEcCcEEEeEeccCCCccccccc
Q 024241          195 QRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPI  255 (270)
Q Consensus       195 ~rlii~G~f~~k~ie~~L~~YI~eYVlC~~C~sPDT~L~ke~rl~~l~C~aCGa~~~V~~i  255 (270)
                      +||||+|+|++++||++|++||++||+|++|+||||.|++++|+++++|+||||+++|.+|
T Consensus        78 ~rlii~G~~~~~~i~~~L~~yI~~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~V~~i  138 (138)
T 1nee_A           78 GRAILQGKFTHFLINERIEDYVNKFVICHECNRPDTRIIREGRISLLKCEACGAKAPLKNV  138 (138)
T ss_dssp             TTEEEESSCSSSHHHHHHHHHHTHHHHHTCCSSCSSCCEEETTTTEEECSTTSCCCCSCCC
T ss_pred             CEEEEEeeeCHHHHHHHHHHHHhhEEECCCCCCcCcEEEEcCCeEEEEccCCCCCcccCCC
Confidence            8999999999999999999999999999999999999999999999999999999999886
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B* Back     alignment and structure
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C* Back     alignment and structure
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens} Back     alignment and structure
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1 Back     alignment and structure
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1 Back     alignment and structure
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1 Back     alignment and structure
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1 Back     alignment and structure
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1 Back     alignment and structure
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1 Back     alignment and structure
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1 Back     alignment and structure
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A Back     alignment and structure
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50} Back     alignment and structure
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4 Back     alignment and structure
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1 Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 270
d1neea198 d.241.1.1 (A:1-98) Translation initiation factor 2 3e-36
d1k8ba_52 d.241.1.1 (A:) Translation initiation factor 2 bet 9e-22
d1neea237 g.59.1.1 (A:99-135) Zinc-binding domain of transla 5e-17
d1k81a_36 g.59.1.1 (A:) Zinc-binding domain of translation i 2e-15
>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 98 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score =  122 bits (308), Expect = 3e-36
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 6/103 (5%)

Query: 116 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPD 175
            +YE+LL R  + L    P    + +R  +     + +G  +T   NF ++   ++R P 
Sbjct: 2   DDYEKLLERAIDQL----PPEVFETKRFEVPKAYSVIQG-NRTFIQNFREVADALNRDPQ 56

Query: 176 HVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNE 218
           H++ FLL ELGT+G+L+G  R +++G+F        +  YVN+
Sbjct: 57  HLLKFLLRELGTAGNLEG-GRAILQGKFTHFLINERIEDYVNK 98
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 52 Back     information, alignment and structure
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 37 Back     information, alignment and structure
>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 36 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query270
d1neea198 Translation initiation factor 2 beta, aIF2beta, N- 100.0
d1k8ba_52 Translation initiation factor 2 beta, aIF2beta, N- 99.87
d1neea237 Zinc-binding domain of translation initiation fact 99.72
d1k81a_36 Zinc-binding domain of translation initiation fact 99.69
d1qypa_57 RBP9 subunit of RNA polymerase II {Archaeon Thermo 89.51
d1tfia_50 Transcriptional factor SII, C-terminal domain {Hum 86.08
d1pfta_50 Transcription initiation factor TFIIB, N-terminal 85.99
d1dl6a_58 Transcription initiation factor TFIIB, N-terminal 85.87
d1twfi272 RBP9 subunit of RNA polymerase II {Baker's yeast ( 85.56
d1d1ra_83 YciH {Escherichia coli [TaxId: 562]} 83.49
>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=100.00  E-value=8.5e-36  Score=235.15  Aligned_cols=97  Identities=32%  Similarity=0.616  Sum_probs=91.1

Q ss_pred             ccHHHHHHHHHHHHhhcCCCcccCcceeecCCCeEEEeCceeEEEEehHHHHHHhCCChHHHHHHHHHhhcCceeecCCc
Q 024241          116 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQ  195 (270)
Q Consensus       116 ~~YeeLL~R~~~~l~~~np~~~~~~~R~~mP~p~V~~eG~kKTvi~Nf~dI~k~L~R~p~hv~kyl~~ELGt~gsid~~~  195 (270)
                      .+|++||+|||+.|    |+...+..||+||+|+|.++| +||+|.||.|||++|||+|+||++||++||||+|+|++ +
T Consensus         2 ~~Y~~LL~R~~~~l----~~~~~~~~R~~mP~~~v~~eG-kkTii~Nf~~Ia~~L~R~p~hl~kfl~~ELgt~g~i~~-~   75 (98)
T d1neea1           2 DDYEKLLERAIDQL----PPEVFETKRFEVPKAYSVIQG-NRTFIQNFREVADALNRDPQHLLKFLLRELGTAGNLEG-G   75 (98)
T ss_dssp             CSSCCCCCSSSSSS----CTTSCCCCCCCCSCCCCCEET-TEEEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCBT-T
T ss_pred             ccHHHHHHHHHHHC----CcccCCCcceecCCceEEEec-ceEEEechHHHHHHHCCCHHHHHHHHHHHhCCceEEeC-C
Confidence            37999999999999    666666779999999999999 89999999999999999999999999999999999985 5


Q ss_pred             eEEEEeecChHHHHHHHHHhccc
Q 024241          196 RLVVKGRFAPKNFEGILRRYVNE  218 (270)
Q Consensus       196 rlii~G~f~~k~ie~~L~~YI~e  218 (270)
                      +|||+|+|++++|+++|++||++
T Consensus        76 ~lii~G~~~~~~i~~~l~~yI~e   98 (98)
T d1neea1          76 RAILQGKFTHFLINERIEDYVNK   98 (98)
T ss_dssp             TEEEESSCSSSHHHHHHHHHHTH
T ss_pred             EEEEEeeeCHHHHHHHHHHHhcC
Confidence            99999999999999999999975
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]} Back     information, alignment and structure
>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure