Citrus Sinensis ID: 024297

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF
Secondary Structure (PSIPRED)
cccccccccccccEEEEcccccHHHHHHHHHHHcccccEEEEccccccHHHHcccccEEEEccccccHHHHHcccccEEEEEcccccccccHHHHHHcccEEEccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccEEEEEcccHHHHHHHHHHcccccEEEEEcccccccccccccccccccEEcccccccccccccccHHHHHHcccEEEEcccccHHHHccccHHHHHHcccccEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEcccccHHHHHHHHHHHccccEEEcccccHHHHHHHHccccEEEEccccccHHHHHHHcccEEEEEcccccccccHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccEcEccccccEEEEEcccHHHHHHHHHHHHcccEEEEEcccccHHHHHHcccEEEccccccHHHHHHccccEccHHHHHHHccEEEEEccccHHHcccccHHHHHHHHcccEEEEEEcccccEcc
Coil and Loop (DISEMBL)
megmarssdknitrvlfcgphfpashnytkeylqnypsiqvdvvpisdvpdVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGvglegvdinaatrcgikvaripgdvtgnaaSCAELTIYLMLGLLRKQNEMRMAIEQKklgvptgetllgKTVFILGFGNIGVELAKRLRPFGVKIiatkrswashsqVSCQSSALAVKNGiiddlvdekgcheDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF
Flexible Loop (DISEMBL)
megmarssdkniTRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKklgvptgetlLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF
Low Complexity Region (SEG)
MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPsiqvdvvpisdvpdviANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVklcssslssksMFFATYVVFMFQGHGVSF
Disordered region (IsUnstruct)
***********ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH****
Disordered Region (DISOPRED)
**************VLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF
Disordered Region (DISEMBL)
*********KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK************SSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF
Disordered Region (DISPRO)
*****RSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
O29445	527	D-3-phosphoglycerate dehy	yes	no	0.468	0.239	0.366	5e-13
A1RYE4	339	Glyoxylate reductase OS=T	yes	no	0.680	0.539	0.283	8e-13
O43175	533	D-3-phosphoglycerate dehy	yes	no	0.438	0.221	0.356	2e-11
A5A6P1	533	D-3-phosphoglycerate dehy	yes	no	0.438	0.221	0.356	2e-11
A5GFY8	533	D-3-phosphoglycerate dehy	yes	no	0.434	0.219	0.367	2e-11
Q60HD7	533	D-3-phosphoglycerate dehy	N/A	no	0.438	0.221	0.348	3e-11
P35136	525	D-3-phosphoglycerate dehy	yes	no	0.520	0.266	0.278	3e-11
B6YWH0	334	Glyoxylate reductase OS=T	yes	no	0.624	0.502	0.257	4e-11
Q5EAD2	533	D-3-phosphoglycerate dehy	yes	no	0.434	0.219	0.359	4e-11
Q5JEZ2	333	Glyoxylate reductase OS=P	yes	no	0.598	0.483	0.277	5e-11

>sp|O29445|SERA_ARCFU D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=serA PE=3 SV=1

 Score = 75.1 bits (183), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 77/142 (54%), Gaps = 16/142 (11%)

Query: 46  ISDVPDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVAR 104
           I +VP     Y   VV++  ++D+  I  A  +K+I + GVG++ +DINAAT+ GI V  
Sbjct: 36  IREVP----KYEAIVVRSQTKVDAEVIQAAKNLKIIGRAGVGVDNIDINAATQRGIVVVN 91

Query: 105 IPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFIL 159
            PG   GN  S AE  I LML   RK  +   ++     E+KK     G  L GKT  ++
Sbjct: 92  APG---GNTISTAEHAIALMLAAARKIPQADRSVKEGKWERKKF---MGIELRGKTAGVI 145

Query: 160 GFGNIGVELAKRLRPFGVKIIA 181
           G G +G E+AKR +   + ++A
Sbjct: 146 GLGRVGFEVAKRCKALEMNVLA 167

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 9EC: 5

>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1

 Score = 74.3 bits (181), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 96/215 (44%), Gaps = 32/215 (14%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           LC++ T ++D+  +  A  +K+I  + VG + +DI  AT+ GI V   PG +T    + A
Sbjct: 52  LCLL-TDKIDAEVMDAAPNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTD---AVA 107

Query: 118 ELTIYLMLGLLRKQNEMRMAIEQKKLGVP------TGETLLGKTVFILGFGNIGVELAKR 171
           E T+ L+L + R+  E    I   +   P      TG  L GKT+ ++G G IGV  AKR
Sbjct: 108 EFTVGLILAVTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKR 167

Query: 172 LRPFGVKII--ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229
           L  F VKI+    +R W   + +                         D+     K+D+V
Sbjct: 168 LSSFDVKILYYDIERRWDVETVIPNMEFT-------------------DLDTLLEKSDIV 208

Query: 230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG 264
              + L K+T  L +     K M    Y++   +G
Sbjct: 209 SIHVPLTKETYHLINEERLRK-MKKTAYLINTARG 242

Thermofilum pendens (strain Hrk 5) (taxid: 368408)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|O43175|SERA_HUMAN D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 74/129 (57%), Gaps = 11/129 (8%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V    ++ ++ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct: 51  LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTP---NGNSLSAA 107

Query: 118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           ELT  +++ L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R+
Sbjct: 108 ELTCGMIMCLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRM 164

Query: 173 RPFGVKIIA 181
           + FG+K I 
Sbjct: 165 QSFGMKTIG 173

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|A5A6P1|SERA_PANTR D-3-phosphoglycerate dehydrogenase OS=Pan troglodytes GN=PHGDH PE=2 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 74/129 (57%), Gaps = 11/129 (8%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V    ++ ++ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct: 51  LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTP---NGNSLSAA 107

Query: 118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           ELT  +++ L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R+
Sbjct: 108 ELTCGMIMCLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRM 164

Query: 173 RPFGVKIIA 181
           + FG+K I 
Sbjct: 165 QSFGMKTIG 173

Pan troglodytes (taxid: 9598)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|A5GFY8|SERA_PIG D-3-phosphoglycerate dehydrogenase OS=Sus scrofa GN=PHGDH PE=3 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 11/128 (8%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V    ++ S+ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct: 51  LIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTP---NGNSLSAA 107

Query: 118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           ELT  ++L L R+  +   ++     E+KK     G  L GK + ILG G IG E+A R+
Sbjct: 108 ELTCGMILCLARQIPQATASMKDGKWERKKF---MGTELNGKVLGILGLGRIGREVATRM 164

Query: 173 RPFGVKII 180
           + FG+K I
Sbjct: 165 QSFGMKTI 172

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|Q60HD7|SERA_MACFA D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH PE=2 SV=4

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 74/129 (57%), Gaps = 11/129 (8%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V    ++ ++ I+ A +++++ + G G++ VD+ AATR G+ V   P    GN+ S A
Sbjct: 51  LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTP---NGNSLSAA 107

Query: 118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           ELT  +++ L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R+
Sbjct: 108 ELTCGMIMCLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRM 164

Query: 173 RPFGVKIIA 181
           + FG+K I 
Sbjct: 165 QSFGMKTIG 173

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|P35136|SERA_BACSU D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis (strain 168) GN=serA PE=3 SV=3

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 81/151 (53%), Gaps = 11/151 (7%)

Query: 37  PSIQVDVVPI-----SDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGV 90
           P I+ D + I     +D  D +  +   +V++  ++  +  ++   +K++ + GVG++ +
Sbjct: 17  PLIESDFIEIVQKNVADAEDELHTFDALLVRSATKVTEDLFNKMTSLKIVGRAGVGVDNI 76

Query: 91  DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPTG 148
           DI+ AT+ G+ V   P    GN  S AE T  ++  L+R   +  ++++ ++       G
Sbjct: 77  DIDEATKHGVIVINAP---NGNTISTAEHTFAMISSLMRHIPQANISVKSREWNRTAYVG 133

Query: 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKI 179
             L GKT+ I+G G IG E+A+R R FG+ +
Sbjct: 134 SELYGKTLGIVGLGRIGSEIAQRARAFGMTV 164

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|B6YWH0|GYAR_THEON Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1

 Score = 68.6 bits (166), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 30/198 (15%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L  + + R+D+     A ++K++  + VG + +DI  AT+ G+ +   P DV  NA   A
Sbjct: 49  LVTMLSERIDAEVFDAAPRLKIVANYAVGYDNIDIEEATKMGVYITNTP-DVLTNA--TA 105

Query: 118 ELTIYLMLGLLRKQNEMRMAI---EQKKLGVPT------GETLLGKTVFILGFGNIGVEL 168
           ++   L+L   R+  E    +   E KK GV        G  + G+T+ I+GFG IG  +
Sbjct: 106 DMAWVLLLATARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAI 165

Query: 169 AKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228
           A+R + FG++I+   R+     +    +  +      +D+L+ E             +D 
Sbjct: 166 ARRAKGFGMRILYNSRTRKPEVEKELGAEFMP-----LDELLKE-------------SDF 207

Query: 229 VVCCLSLNKQTVKLCSSS 246
           VV  + L K+T  + +  
Sbjct: 208 VVLVVPLTKETYHMINEE 225

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q5EAD2|SERA_BOVIN D-3-phosphoglycerate dehydrogenase OS=Bos taurus GN=PHGDH PE=2 SV=3

 Score = 68.6 bits (166), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 73/128 (57%), Gaps = 11/128 (8%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V    ++ S+ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct: 51  LIVRSATKVTSDIINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTP---NGNSLSAA 107

Query: 118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           ELT  +++ L R+  +   ++     E+KK     G  L GK + ILG G IG E+A R+
Sbjct: 108 ELTCGMIMCLARQIPQAAASMKDGKWERKKF---MGTELNGKVLGILGLGRIGREVATRM 164

Query: 173 RPFGVKII 180
           + FG+K I
Sbjct: 165 QSFGMKTI 172

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=gyaR PE=3 SV=1

 Score = 68.6 bits (166), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 30/191 (15%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L  + + R+DS     A +++++  + VG + +D+  ATR GI V   P DV  +A   A
Sbjct: 49  LVTMLSERIDSEVFDAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTP-DVLTDA--TA 105

Query: 118 ELTIYLMLGLLRK---QNEMRMAIEQKKLGVPT------GETLLGKTVFILGFGNIGVEL 168
           +    L+L   R+    +    + E K+ G+        G  + GKT+ I+GFG IG  +
Sbjct: 106 DFAWTLLLATARRLIEADHFTRSGEWKRRGIAWHPRWFLGYDVYGKTIGIVGFGRIGQAV 165

Query: 169 AKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 228
           A+R R FG++I+     + S S+       L  +   ++DL+ E             +D 
Sbjct: 166 ARRARGFGMRIL-----YYSRSRKPEAEKELGAEFRSLEDLLRE-------------SDF 207

Query: 229 VVCCLSLNKQT 239
           VV  + L K+T
Sbjct: 208 VVLAVPLTKET 218

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
224136053	343	predicted protein [Populus trichocarpa]	0.914	0.717	0.719	1e-104
118488445	343	unknown [Populus trichocarpa]	0.914	0.717	0.719	1e-104
255561522	380	phosphoglycerate dehydrogenase, putative	0.914	0.647	0.715	1e-102
363807464	391	uncharacterized protein LOC100785085 [Gl	0.892	0.613	0.670	6e-94
225460279	373	PREDICTED: d-3-phosphoglycerate dehydrog	0.925	0.667	0.670	6e-92
296089431	343	unnamed protein product [Vitis vinifera]	0.914	0.717	0.674	2e-91
357455585	382	D-3-phosphoglycerate dehydrogenase [Medi	0.895	0.630	0.634	3e-91
359493304	333	PREDICTED: d-3-phosphoglycerate dehydrog	0.877	0.708	0.662	4e-91
388510518	344	unknown [Medicago truncatula]	0.895	0.700	0.634	6e-91
449503247	337	PREDICTED: d-3-phosphoglycerate dehydrog	0.892	0.712	0.666	3e-90

>gi|224136053|ref|XP_002327369.1| predicted protein [Populus trichocarpa] gi|222835739|gb|EEE74174.1| predicted protein [Populus trichocarpa]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 177/246 (71%), Positives = 212/246 (86%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           M  +SDK+ITRVLFCGP+FPASH YTKEYLQ YP IQVD VP++ VPDVI+NY++C+VK 
Sbjct: 1   MVGNSDKHITRVLFCGPYFPASHQYTKEYLQKYPFIQVDDVPLAVVPDVISNYNICIVKN 60

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           MRL SN ISRA QMKLIMQFGVG+EGVDI+AAT+ GIKVARIPGD TGNAASCAE+ IYL
Sbjct: 61  MRLTSNIISRATQMKLIMQFGVGIEGVDIDAATKYGIKVARIPGDATGNAASCAEMAIYL 120

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQNEM+++I+QK+LG P GETL GKTVFI+GFGNIG++LAKRLRPFGVKIIATK
Sbjct: 121 MLGLLRKQNEMQISIKQKRLGEPAGETLFGKTVFIMGFGNIGIDLAKRLRPFGVKIIATK 180

Query: 184 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLC 243
           RSWA HS+ S QS+   ++NG  D+LVDEKG HEDI++FA ++D+VVCCL +NK+T  + 
Sbjct: 181 RSWALHSEGSLQSNGFLIENGTNDNLVDEKGSHEDIYKFAGESDIVVCCLRMNKETAGIV 240

Query: 244 SSSLSS 249
           + S  S
Sbjct: 241 NKSFIS 246

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488445|gb|ABK96037.1| unknown [Populus trichocarpa]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 177/246 (71%), Positives = 212/246 (86%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           M  +SDK+ITRVLFCGP+FPASH YTKEYLQ YP IQVD VP++ VPDVI+NY++C+VK 
Sbjct: 1   MVGNSDKHITRVLFCGPYFPASHQYTKEYLQKYPFIQVDDVPLAVVPDVISNYNICIVKN 60

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           MRL SN ISRA QMKLIMQFGVG+EGVDI+AAT+ GIKVARIPGD TGNAASCAE+ IYL
Sbjct: 61  MRLTSNIISRATQMKLIMQFGVGIEGVDIDAATKYGIKVARIPGDATGNAASCAEMAIYL 120

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQNEM+++I+QK+LG P GETL GKTVFI+GFGNIG++LAKRLRPFGVKIIATK
Sbjct: 121 MLGLLRKQNEMQISIKQKRLGEPAGETLFGKTVFIMGFGNIGIDLAKRLRPFGVKIIATK 180

Query: 184 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLC 243
           RSWA HS+ S QS+   ++NG  D+LVDEKG HEDI++FA ++D+VVCCL +NK+T  + 
Sbjct: 181 RSWALHSEGSLQSNGFLIENGTNDNLVDEKGSHEDIYKFAGESDIVVCCLRMNKETAGIV 240

Query: 244 SSSLSS 249
           + S  S
Sbjct: 241 NKSFIS 246

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561522|ref|XP_002521771.1| phosphoglycerate dehydrogenase, putative [Ricinus communis] gi|223538984|gb|EEF40581.1| phosphoglycerate dehydrogenase, putative [Ricinus communis]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/246 (71%), Positives = 207/246 (84%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           MA  +   ITRVLFCGPHFPASH YTK+YLQ YP IQVD VP++DVP+VIANYH+CV KT
Sbjct: 38  MAGDNSNYITRVLFCGPHFPASHIYTKQYLQKYPFIQVDDVPLNDVPNVIANYHICVSKT 97

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
            R+DS+ ISRA QMKLIMQFGVGLEG++I+AA+RCGIKVARIPGD TGNAASCAE+ IYL
Sbjct: 98  TRIDSSIISRATQMKLIMQFGVGLEGINIDAASRCGIKVARIPGDFTGNAASCAEMAIYL 157

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQN+M+++I+QKKLG P GETLLGKTVFILG+GNIG+ELAKRL+PFGVK+IATK
Sbjct: 158 MLGLLRKQNQMQVSIKQKKLGEPIGETLLGKTVFILGYGNIGIELAKRLQPFGVKVIATK 217

Query: 184 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLC 243
           R W S+  V  Q   L ++NG IDDLVD+KG HEDI EFAS AD++VCCL +NK T  + 
Sbjct: 218 RKWTSNLHVLHQQKGLPMQNGSIDDLVDKKGSHEDIHEFASNADIIVCCLHMNKDTAGIV 277

Query: 244 SSSLSS 249
           + S  S
Sbjct: 278 NKSFIS 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807464|ref|NP_001242647.1| uncharacterized protein LOC100785085 [Glycine max] gi|255645066|gb|ACU23032.1| unknown [Glycine max]

 Score =  349 bits (896), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 167/249 (67%), Positives = 209/249 (83%), Gaps = 9/249 (3%)

Query: 6   RSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMR 65
           + ++K ITRVLFCGP FPASH YT EYLQN+  I+VDV+P+ DVP  IANYH+C+VK MR
Sbjct: 56  KDAEKQITRVLFCGPRFPASHEYTIEYLQNHSHIKVDVLPLEDVPKDIANYHVCIVKNMR 115

Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           LDS  ISRA QM+LIMQ+GVGLEGVDI+AAT+ GIKVARIPGDV+GN+ASCAE+ IYLML
Sbjct: 116 LDSEIISRAVQMQLIMQYGVGLEGVDIDAATKHGIKVARIPGDVSGNSASCAEMAIYLML 175

Query: 126 GLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
           GLLRKQNE++++I+QKKLG P  ETLLGKT+FILGFGNIG++LAKRL+PFGVK+IA KRS
Sbjct: 176 GLLRKQNELQVSIQQKKLGEPITETLLGKTIFILGFGNIGMDLAKRLQPFGVKVIAIKRS 235

Query: 186 WASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSS 245
           WAS++Q    +S L+  +   +DLVD KG HEDI+EFA KAD+VVCCL+LN++ V +   
Sbjct: 236 WASYAQ---HASKLSRNDA--EDLVDVKGSHEDIYEFARKADIVVCCLTLNREAVGI--- 287

Query: 246 SLSSKSMFF 254
            +++K +FF
Sbjct: 288 -INNKFIFF 295

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460279|ref|XP_002282092.1| PREDICTED: d-3-phosphoglycerate dehydrogenase-like isoform 1 [Vitis vinifera]

 Score =  343 bits (879), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 167/249 (67%), Positives = 200/249 (80%)

Query: 1   MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCV 60
           +E M + S+  ITR+LFCGP+FPAS+ YT+EYLQNYP IQVD     DVPDVIA+Y +C+
Sbjct: 28  IEKMVKDSNGCITRLLFCGPNFPASNKYTREYLQNYPFIQVDDSSFEDVPDVIADYDMCI 87

Query: 61  VKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELT 120
           VK+MRLDSN ISRAN+MKLIMQFGVGLEGVDINAAT+CGIKVARI    TGNAASCAE+ 
Sbjct: 88  VKSMRLDSNIISRANKMKLIMQFGVGLEGVDINAATKCGIKVARIASGETGNAASCAEMA 147

Query: 121 IYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           IYLMLGLLRKQ EM+++++QK +G P G+TL GKTVFI+GFGNIG++LAKRLRPFGV+I+
Sbjct: 148 IYLMLGLLRKQKEMQISLKQKIVGEPIGDTLFGKTVFIMGFGNIGIDLAKRLRPFGVRIL 207

Query: 181 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTV 240
           ATKRSWAS S  S QS+     N   D+LVDEKG HE I++FAS AD+VVCCL LN +T 
Sbjct: 208 ATKRSWASQSLNSSQSNGFPTPNDNADELVDEKGGHEAIYDFASSADIVVCCLRLNSETA 267

Query: 241 KLCSSSLSS 249
            +      S
Sbjct: 268 AIIDKKFIS 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089431|emb|CBI39250.3| unnamed protein product [Vitis vinifera]

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 166/246 (67%), Positives = 198/246 (80%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           M + S+  ITR+LFCGP+FPAS+ YT+EYLQNYP IQVD     DVPDVIA+Y +C+VK+
Sbjct: 1   MVKDSNGCITRLLFCGPNFPASNKYTREYLQNYPFIQVDDSSFEDVPDVIADYDMCIVKS 60

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           MRLDSN ISRAN+MKLIMQFGVGLEGVDINAAT+CGIKVARI    TGNAASCAE+ IYL
Sbjct: 61  MRLDSNIISRANKMKLIMQFGVGLEGVDINAATKCGIKVARIASGETGNAASCAEMAIYL 120

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQ EM+++++QK +G P G+TL GKTVFI+GFGNIG++LAKRLRPFGV+I+ATK
Sbjct: 121 MLGLLRKQKEMQISLKQKIVGEPIGDTLFGKTVFIMGFGNIGIDLAKRLRPFGVRILATK 180

Query: 184 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLC 243
           RSWAS S  S QS+     N   D+LVDEKG HE I++FAS AD+VVCCL LN +T  + 
Sbjct: 181 RSWASQSLNSSQSNGFPTPNDNADELVDEKGGHEAIYDFASSADIVVCCLRLNSETAAII 240

Query: 244 SSSLSS 249
                S
Sbjct: 241 DKKFIS 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455585|ref|XP_003598073.1| D-3-phosphoglycerate dehydrogenase [Medicago truncatula] gi|355487121|gb|AES68324.1| D-3-phosphoglycerate dehydrogenase [Medicago truncatula]

 Score =  340 bits (872), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 156/246 (63%), Positives = 200/246 (81%), Gaps = 5/246 (2%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           M    ++  TRVLFCGP FP SH YT EYLQN+ SI+VDV+P+ ++P  IANYH+CVVK 
Sbjct: 45  MINDVERKTTRVLFCGPQFPCSHLYTTEYLQNHSSIKVDVLPLEEIPKAIANYHVCVVKM 104

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           M+LDSN ISRA QMKLIMQ+GVGLEGVDI+AAT+ GIKVARIP   TGN+ +CAE+ IYL
Sbjct: 105 MKLDSNIISRAVQMKLIMQYGVGLEGVDIDAATKHGIKVARIPSGGTGNSTACAEMAIYL 164

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQNEM+++I+Q+KLG P G+TL GKT+FILGFGNIG++LA+RL+PFGVK+IATK
Sbjct: 165 MLGLLRKQNEMQISIQQRKLGEPIGDTLFGKTIFILGFGNIGIDLARRLKPFGVKVIATK 224

Query: 184 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLC 243
           RSWAS++Q + +     +    +DDLVD KG HEDI++FA+KAD+V CCL+LN +T  + 
Sbjct: 225 RSWASYAQNTNE-----LNRNDVDDLVDVKGSHEDIYDFATKADIVACCLNLNSETAGIV 279

Query: 244 SSSLSS 249
           +++  S
Sbjct: 280 NNNFIS 285

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493304|ref|XP_003634565.1| PREDICTED: d-3-phosphoglycerate dehydrogenase-like isoform 2 [Vitis vinifera]

 Score =  340 bits (871), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 163/246 (66%), Positives = 195/246 (79%), Gaps = 10/246 (4%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           M + S+  ITR+LFCGP+FPAS+ YT+EYLQNYP IQVD     DVPDVIA+Y +C+VK+
Sbjct: 1   MVKDSNGCITRLLFCGPNFPASNKYTREYLQNYPFIQVDDSSFEDVPDVIADYDMCIVKS 60

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           MRLDSN ISRAN+MKLIMQFGVGLEGVDINAAT+CGIKVARI    TGNAASCAE+ IYL
Sbjct: 61  MRLDSNIISRANKMKLIMQFGVGLEGVDINAATKCGIKVARIASGETGNAASCAEMAIYL 120

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQ EM+++++QK +G P G+TL GKTVFI+GFGNIG++LAKRLRPFGV+I+ATK
Sbjct: 121 MLGLLRKQKEMQISLKQKIVGEPIGDTLFGKTVFIMGFGNIGIDLAKRLRPFGVRILATK 180

Query: 184 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLC 243
           RSWAS S          + N   D+LVDEKG HE I++FAS AD+VVCCL LN +T  + 
Sbjct: 181 RSWASQS----------LPNDNADELVDEKGGHEAIYDFASSADIVVCCLRLNSETAAII 230

Query: 244 SSSLSS 249
                S
Sbjct: 231 DKKFIS 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510518|gb|AFK43325.1| unknown [Medicago truncatula]

 Score =  339 bits (870), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 156/246 (63%), Positives = 200/246 (81%), Gaps = 5/246 (2%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           M    ++  TRVLFCGP FP SH YT EYLQN+ SI+VDV+P+ ++P  IANYH+CVVK 
Sbjct: 7   MINDVERKTTRVLFCGPQFPCSHLYTTEYLQNHSSIKVDVLPLEEIPKAIANYHVCVVKM 66

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           M+LDSN ISRA QMKLIMQ+GVGLEGVDI+AAT+ GIKVARIP   TGN+ +CAE+ IYL
Sbjct: 67  MKLDSNIISRAVQMKLIMQYGVGLEGVDIDAATKHGIKVARIPSGGTGNSTACAEMAIYL 126

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQNEM+++I+Q+KLG P G+TL GKT+FILGFGNIG++LA+RL+PFGVK+IATK
Sbjct: 127 MLGLLRKQNEMQISIQQRKLGEPIGDTLFGKTIFILGFGNIGIDLARRLKPFGVKVIATK 186

Query: 184 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLC 243
           RSWAS++Q + +     +    +DDLVD KG HEDI++FA+KAD+V CCL+LN +T  + 
Sbjct: 187 RSWASYAQNTNE-----LNRNDVDDLVDVKGSHEDIYDFATKADIVACCLNLNSETAGIV 241

Query: 244 SSSLSS 249
           +++  S
Sbjct: 242 NNNFIS 247

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503247|ref|XP_004161907.1| PREDICTED: d-3-phosphoglycerate dehydrogenase-like [Cucumis sativus]

 Score =  337 bits (864), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 166/249 (66%), Positives = 197/249 (79%), Gaps = 9/249 (3%)

Query: 1   MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCV 60
           ME     S K + RVLFCG  FP+SHNYT EYL NYP +QVD+VP  DVP VI+NYH+CV
Sbjct: 1   MERTHEDSSKGLIRVLFCGSQFPSSHNYTCEYLLNYPFVQVDIVPCEDVPKVISNYHICV 60

Query: 61  VKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELT 120
           VK M+ D + ISRA+QMKLI+QFGVGL+GVD++AAT+ GIKVARIP  VTGNA SCAE+ 
Sbjct: 61  VKMMKFDFDLISRASQMKLIVQFGVGLDGVDVDAATKRGIKVARIPSGVTGNALSCAEMA 120

Query: 121 IYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           IYLMLGLLRKQ EM++A++ K LGVPTG+TLLGKTVFI+GFGNIG+ELAKRLRPFGV+II
Sbjct: 121 IYLMLGLLRKQKEMQIAVDHKMLGVPTGDTLLGKTVFIMGFGNIGLELAKRLRPFGVRII 180

Query: 181 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTV 240
           ATKRSW  +      SS L   NG  +DLVD+KG HEDI +FAS AD+VVCCL LN +TV
Sbjct: 181 ATKRSWTEN------SSQL---NGASEDLVDQKGAHEDIQKFASIADIVVCCLCLNSETV 231

Query: 241 KLCSSSLSS 249
            + + S  S
Sbjct: 232 GVVNKSFLS 240

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
TAIR|locus:2207046	373	AT1G72190 [Arabidopsis thalian	0.843	0.608	0.594	6.1e-71
UNIPROTKB|E1C7Y3	525	PHGDH "Uncharacterized protein	0.446	0.228	0.344	4.2e-13
TIGR_CMR|CHY_2698	525	CHY_2698 "D-3-phosphoglycerate	0.453	0.232	0.359	2.2e-12
UNIPROTKB|Q0BWN7	328	gyaR "Glyoxylate reductase" [H	0.423	0.347	0.357	1.6e-11
ZFIN|ZDB-GENE-030131-647	528	phgdh "phosphoglycerate dehydr	0.457	0.232	0.341	3.1e-11
UNIPROTKB|Q5SZU1	499	PHGDH "D-3-phosphoglycerate de	0.434	0.234	0.359	8.8e-11
UNIPROTKB|O43175	533	PHGDH "D-3-phosphoglycerate de	0.434	0.219	0.359	9.9e-11
UNIPROTKB|A5GFY8	533	PHGDH "D-3-phosphoglycerate de	0.434	0.219	0.367	9.9e-11
MGI|MGI:1355330	533	Phgdh "3-phosphoglycerate dehy	0.446	0.225	0.344	1.5e-10
RGD|61987	533	Phgdh "phosphoglycerate dehydr	0.446	0.225	0.336	1.5e-10

TAIR|locus:2207046 AT1G72190 [Arabidopsis thaliana (taxid:3702)]

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 142/239 (59%), Positives = 177/239 (74%)

Query:     1 MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPXXXXXXXXXXXXXXXXANYHLCV 60
             +E +    D ++TRVLFCGPHFP S+N+T+EYLQ YP                 NYH+CV
Sbjct:    40 IERIVEKEDMHVTRVLFCGPHFPDSYNFTREYLQPYPFIKVDVVHYRDVPEVIKNYHICV 99

Query:    61 VKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELT 120
               TM++DSN ISRA+ +KLIMQ+GVGL+GVDI+AAT+ GIKVARIP + TGNAASC+E+ 
Sbjct:   100 AMTMQMDSNVISRASNIKLIMQYGVGLDGVDIDAATKHGIKVARIPSEGTGNAASCSEMA 159

Query:   121 IYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
             IYLMLGLL+KQNEM++++  + LG PTG+TLLGKTVFILG+GNIG+ELAKRL+PFG ++I
Sbjct:   160 IYLMLGLLKKQNEMQISLRNRLLGEPTGDTLLGKTVFILGYGNIGIELAKRLKPFGSRVI 219

Query:   181 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT 239
             ATKR W + S V   S            LVDEKG HEDI+ FA KAD+VV CL LNK+T
Sbjct:   220 ATKRFWPA-SIVDSDSR-----------LVDEKGSHEDIYTFAGKADIVVVCLRLNKET 266

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|E1C7Y3 PHGDH "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 175 (66.7 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
 Identities = 43/125 (34%), Positives = 74/125 (59%)

Query:    58 LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
             L V    ++ ++ +  A +++++ + G G++ VD++AATR G+ V   P   TGN+ S A
Sbjct:    51 LIVRSATKVSADVLEAAGRLQVVGRAGTGVDNVDVDAATRKGVLVMNTP---TGNSLSAA 107

Query:   118 ELTIYLMLGLLRKQNEMRMAIEQKKLGVPT--GETLLGKTVFILGFGNIGVELAKRLRPF 175
             ELT  ++L L R+  +   ++++ K       G  L GKT+ +LG G IG E+A R++ F
Sbjct:   108 ELTCGMILCLARQIPQAAASMKEGKWDRKKYMGMELNGKTLGVLGLGRIGREVATRMQAF 167

Query:   176 GVKII 180
             G+K I
Sbjct:   168 GMKTI 172

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0006544 "glycine metabolic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0019530 "taurine metabolic process" evidence=IEA

GO:0021510 "spinal cord development" evidence=IEA

GO:0021782 "glial cell development" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0022402 "cell cycle process" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

TIGR_CMR|CHY_2698 CHY_2698 "D-3-phosphoglycerate dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 177 (67.4 bits), Expect = 2.2e-12, P = 2.2e-12
 Identities = 46/128 (35%), Positives = 73/128 (57%)

Query:    56 YHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAA 114
             Y   +V++  ++ +  I  A  +K+I + GVG++ +D+ AA++ GI V   P    GN  
Sbjct:    42 YDALIVRSETKVTARIIEAAENLKIIGRAGVGVDNIDLAAASKKGIIVVNSP---EGNTI 98

Query:   115 SCAELTIYLMLGLLRKQNEMRMAIEQKK-LGVP-TGETLLGKTVFILGFGNIGVELAKRL 172
             + AE T  LM+ LLR   +   A+++ K L    TG  L GKTV I+G G IG  +AKR+
Sbjct:    99 AAAEHTFALMMALLRNIPQAHAALKEGKWLRKEFTGYELRGKTVGIIGLGRIGTAVAKRV 158

Query:   173 RPFGVKII 180
             + F  ++I
Sbjct:   159 KAFETRVI 166

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS

GO:0006564 "L-serine biosynthetic process" evidence=ISS

UNIPROTKB|Q0BWN7 gyaR "Glyoxylate reductase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 171 (65.3 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 44/123 (35%), Positives = 71/123 (57%)

Query:    63 TMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTI 121
             T ++D   ++RA +Q++LI QFG G++ +D+ +A + GI V   PG +T + A  A   +
Sbjct:    57 TDKIDGRLMARAGDQLRLIAQFGAGVDNIDVASAVQRGITVTNTPGVLTDDTADVA---M 113

Query:   122 YLMLGLLRKQNEMRMAIEQKKLG--VPT---GETLLGKTVFILGFGNIGVELAKRLRPFG 176
              L+L + R+ +E    +E  K     PT   G  L GK + I+G G IG  +A+R R FG
Sbjct:   114 ALILAVPRRMHEGVQIMEAGKFDGWTPTWMMGRRLSGKRLGIIGMGRIGQAVARRARAFG 173

Query:   177 VKI 179
             ++I
Sbjct:   174 MQI 176

GO:0046487 "glyoxylate metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

ZFIN|ZDB-GENE-030131-647 phgdh "phosphoglycerate dehydrogenase" [Danio rerio (taxid:7955)]

 Score = 172 (65.6 bits), Expect = 3.1e-11, P = 3.1e-11
 Identities = 44/129 (34%), Positives = 75/129 (58%)

Query:    55 NYHLCVVKTM-RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNA 113
             NY   +V++  ++ ++ I+  + +K+I + G G++ VD++AAT+ GI V   P   +GN 
Sbjct:    47 NYDGLIVRSATKVTADVINAGSSLKIIGRAGTGVDNVDVDAATKRGIIVMNTP---SGNT 103

Query:   114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT--GETLLGKTVFILGFGNIGVELAKR 171
              S AELT  L++ L R   +  ++++  K       G  L GK + I+G G IG E+A R
Sbjct:   104 LSAAELTCALVMSLSRHIPQAVISMKDGKWDRKKFMGSELYGKVLGIVGLGRIGKEVATR 163

Query:   172 LRPFGVKII 180
             ++ FG+K I
Sbjct:   164 MQSFGMKTI 172

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5SZU1 PHGDH "D-3-phosphoglycerate dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 8.8e-11, P = 8.8e-11
 Identities = 46/128 (35%), Positives = 74/128 (57%)

Query:    58 LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
             L V    ++ ++ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct:    17 LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPN---GNSLSAA 73

Query:   118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
             ELT  +++ L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R+
Sbjct:    74 ELTCGMIMCLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRM 130

Query:   173 RPFGVKII 180
             + FG+K I
Sbjct:   131 QSFGMKTI 138

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|O43175 PHGDH "D-3-phosphoglycerate dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 9.9e-11, P = 9.9e-11
 Identities = 46/128 (35%), Positives = 74/128 (57%)

Query:    58 LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
             L V    ++ ++ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct:    51 LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPN---GNSLSAA 107

Query:   118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
             ELT  +++ L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R+
Sbjct:   108 ELTCGMIMCLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRM 164

Query:   173 RPFGVKII 180
             + FG+K I
Sbjct:   165 QSFGMKTI 172

GO:0051287 "NAD binding" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0006544 "glycine metabolic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0019530 "taurine metabolic process" evidence=IEA

GO:0021510 "spinal cord development" evidence=IEA

GO:0021782 "glial cell development" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0022402 "cell cycle process" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0009055 "electron carrier activity" evidence=TAS

GO:0007420 "brain development" evidence=TAS

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006564 "L-serine biosynthetic process" evidence=TAS

GO:0008652 "cellular amino acid biosynthetic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|A5GFY8 PHGDH "D-3-phosphoglycerate dehydrogenase" [Sus scrofa (taxid:9823)]

 Score = 169 (64.5 bits), Expect = 9.9e-11, P = 9.9e-11
 Identities = 47/128 (36%), Positives = 73/128 (57%)

Query:    58 LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
             L V    ++ S+ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct:    51 LIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPN---GNSLSAA 107

Query:   118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
             ELT  ++L L R+  +   ++     E+KK     G  L GK + ILG G IG E+A R+
Sbjct:   108 ELTCGMILCLARQIPQATASMKDGKWERKKF---MGTELNGKVLGILGLGRIGREVATRM 164

Query:   173 RPFGVKII 180
             + FG+K I
Sbjct:   165 QSFGMKTI 172

GO:0031175 "neuron projection development" evidence=IEA

GO:0022402 "cell cycle process" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0021782 "glial cell development" evidence=IEA

GO:0021510 "spinal cord development" evidence=IEA

GO:0019530 "taurine metabolic process" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IEA

GO:0006544 "glycine metabolic process" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

MGI|MGI:1355330 Phgdh "3-phosphoglycerate dehydrogenase" [Mus musculus (taxid:10090)]

 Score = 168 (64.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 43/125 (34%), Positives = 72/125 (57%)

Query:    58 LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
             L V    ++ ++ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct:    51 LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPN---GNSLSAA 107

Query:   118 ELTIYLMLGLLRKQNEMRMAIEQKKLGVPT--GETLLGKTVFILGFGNIGVELAKRLRPF 175
             ELT  +++ L R+  +   +++  K       G  L GKT+ ILG G IG E+A R++ F
Sbjct:   108 ELTCGMIMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVATRMQSF 167

Query:   176 GVKII 180
             G+K +
Sbjct:   168 GMKTV 172

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISO;TAS

GO:0006541 "glutamine metabolic process" evidence=IMP

GO:0006544 "glycine metabolic process" evidence=IMP

GO:0006563 "L-serine metabolic process" evidence=IMP

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IMP

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0019530 "taurine metabolic process" evidence=IMP

GO:0021510 "spinal cord development" evidence=IMP

GO:0021782 "glial cell development" evidence=IMP

GO:0021915 "neural tube development" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0022402 "cell cycle process" evidence=IMP

GO:0031175 "neuron projection development" evidence=IMP

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO;TAS

RGD|61987 Phgdh "phosphoglycerate dehydrogenase" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 42/125 (33%), Positives = 72/125 (57%)

Query:    58 LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
             L V    ++ ++ I+ A +++++ + G G++ VD+ AATR G+ V   P    GN+ S A
Sbjct:    51 LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPN---GNSLSAA 107

Query:   118 ELTIYLMLGLLRKQNEMRMAIEQKKLGVPT--GETLLGKTVFILGFGNIGVELAKRLRPF 175
             ELT  +++ L R+  +   +++  K       G  L GKT+ ILG G IG E+A R++ F
Sbjct:   108 ELTCGMLMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVAARMQAF 167

Query:   176 GVKII 180
             G+K +
Sbjct:   168 GMKTV 172

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:0006541 "glutamine metabolic process" evidence=IEA;ISO

GO:0006544 "glycine metabolic process" evidence=IEA;ISO

GO:0006563 "L-serine metabolic process" evidence=ISO

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IEA;ISO

GO:0009070 "serine family amino acid biosynthetic process" evidence=TAS

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA;ISO

GO:0010468 "regulation of gene expression" evidence=IEA;ISO

GO:0019530 "taurine metabolic process" evidence=IEA;ISO

GO:0021510 "spinal cord development" evidence=IEA;ISO

GO:0021782 "glial cell development" evidence=IEA;ISO

GO:0021915 "neural tube development" evidence=IEA;ISO

GO:0022008 "neurogenesis" evidence=ISO

GO:0022402 "cell cycle process" evidence=IEA;ISO

GO:0031175 "neuron projection development" evidence=IEA;ISO

GO:0051287 "NAD binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	269
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	1e-141
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	8e-64
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	2e-29
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	6e-29
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	1e-27
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	1e-26
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	1e-25
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	6e-25
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	4e-23
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	5e-23
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	2e-22
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	2e-21
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	2e-21
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	2e-20
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	3e-20
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	9e-20
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	9e-20
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	2e-19
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	5e-19
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	5e-18
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	1e-17
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	5e-17
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	1e-16
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	6e-16
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	7e-16
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	8e-16
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	2e-15
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	7e-15
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	1e-13
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	1e-13
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	4e-12
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	6e-12
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	1e-11
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	2e-11
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	3e-11
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	1e-10
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	3e-10
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	5e-10
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	9e-10
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	2e-09
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	2e-08
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	6e-08
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	1e-07
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	2e-06
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	3e-06
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	7e-06
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	8e-06
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	1e-05
cd01076	227	cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain	2e-05
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	5e-05
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	7e-05
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	2e-04
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	3e-04
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	5e-04
PRK14806	735	PRK14806, PRK14806, bifunctional cyclohexadienyl d	5e-04
COG0334	411	COG0334, GdhA, Glutamate dehydrogenase/leucine deh	5e-04
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	0.001
pfam00208	237	pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenyl	0.003

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score =  400 bits (1029), Expect = e-141
 Identities = 156/240 (65%), Positives = 192/240 (80%), Gaps = 5/240 (2%)

Query: 1   MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCV 60
           ++     SD   TRVLFCGP FPAS++YT+EYLQ YP IQVD V   DVPDVIANY +CV
Sbjct: 7   IDKRVHHSDMRPTRVLFCGPEFPASYSYTREYLQKYPFIQVDAVAREDVPDVIANYDICV 66

Query: 61  VKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELT 120
            K MRLD++ I+RA+QMKLIMQFGVGLEGVD++AAT+ GIKVARIP + TGNAASCAE+ 
Sbjct: 67  PKMMRLDADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMA 126

Query: 121 IYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           IYLMLGLLRKQNEM+++++ ++LG P G+TL GKTVFILG+G IG+ELAKRLRPFGVK++
Sbjct: 127 IYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLL 186

Query: 181 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTV 240
           AT+RSW S  +         + NG +DDLVDEKG HEDI+EFA +AD+VV C +L K+T 
Sbjct: 187 ATRRSWTSEPEDGLL-----IPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETA 241

Length = 347

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  202 bits (515), Expect = 8e-64
 Identities = 79/234 (33%), Positives = 116/234 (49%), Gaps = 25/234 (10%)

Query: 14  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVP-DVIANYHLCVVKTMR-LDSNCI 71
           +VLF GP FP +    +  L   P ++V      D    ++A+  + V    + +D+  +
Sbjct: 1   KVLFLGPEFPDAEELLRALLPPAPGVEVVTAAELDEEAALLADADVLVPGMRKVIDAELL 60

Query: 72  SRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQ 131
           + A +++LI Q GVGL+GVD+ AAT  GI VA IPG   GNA S AE  + LML LLR+ 
Sbjct: 61  AAAPRLRLIQQPGVGLDGVDLEAATARGIPVANIPG---GNAESVAEHAVMLMLALLRRL 117

Query: 132 NEMRMAIEQKKLGVPTGE---TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188
            E    +   + G P G     L GKTV I+G GNIG  +A+RLR FGV++I   R    
Sbjct: 118 PEADRELRAGRWGRPEGRPSRELSGKTVGIVGLGNIGRAVARRLRGFGVEVIYYDRFRDP 177

Query: 189 HSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKL 242
                              +  D    + ++ E  +++DVV   + L  +T  L
Sbjct: 178 -----------------EAEEKDLGVRYVELDELLAESDVVSLHVPLTPETRHL 214

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  112 bits (282), Expect = 2e-29
 Identities = 56/179 (31%), Positives = 87/179 (48%), Gaps = 26/179 (14%)

Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
           +++A ++K I   G G++ +D++AA + GI V  +PG    NA + AE  + L+L LLR+
Sbjct: 58  LAKAPKLKFIQVAGAGVDNIDLDAAKKRGITVTNVPG---ANAEAVAEHALGLLLALLRR 114

Query: 131 ----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186
                  +R        G P G  L GKTV I+G G IG  +AKRL+ FG+K++   R+ 
Sbjct: 115 LPRADAAVRRGWGWLWAGFP-GYELEGKTVGIVGLGRIGQRVAKRLQAFGMKVLYYDRT- 172

Query: 187 ASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSS 245
                          K    +DL         + E  +++DVVV  L L  +T  L + 
Sbjct: 173 --------------RKPEPEEDLGFR---VVSLDELLAQSDVVVLHLPLTPETRHLINE 214

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  111 bits (279), Expect = 6e-29
 Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 23/170 (13%)

Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
           ++ A ++K+I ++GVG + +D+ AA + GI V   PG    N+ S AELTI LML L R+
Sbjct: 63  LAAAPRLKVISRYGVGYDNIDLEAAKKRGIVVTNTPG---ANSNSVAELTIGLMLALARQ 119

Query: 131 QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS 190
             +    +       P G  L GKT+ I+G G IG  +A+RL  FG+K++A         
Sbjct: 120 IPQADREVRAGGWDRPVGTELYGKTLGIIGLGRIGKAVARRLSGFGMKVLAYDPYP---- 175

Query: 191 QVSCQSSALAVKNGI-IDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT 239
                    A ++G+    L       E++ +   ++D +   L L  +T
Sbjct: 176 -----DEEFAKEHGVEFVSL-------EELLK---ESDFISLHLPLTPET 210

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  108 bits (271), Expect = 1e-27
 Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 30/210 (14%)

Query: 39  IQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRC 98
                +   ++ + +A+    +V    +    ++ A  +K I + G G++ +D+ AAT+ 
Sbjct: 29  PDGPDLDEEELLEALADADALIVSVTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKR 88

Query: 99  GIKVARIPGDVTGNAASCAELTIYLMLGLLRK----QNEMRMAIEQKKLGVPTGETLLGK 154
           GI V   PG   GNA S AEL + L+L L R+        R     +K     G  L GK
Sbjct: 89  GILVVNAPG---GNAISVAELVLALLLALARRIPDADASQRRGEWDRKAF--RGTELAGK 143

Query: 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG 214
           TV I+G G IG  +AKRL+ FG+K+I     +  +S                 +     G
Sbjct: 144 TVGIIGLGRIGRAVAKRLKAFGMKVIG----YDPYS---------------PRERAGVDG 184

Query: 215 CH--EDIFEFASKADVVVCCLSLNKQTVKL 242
               + + E  ++AD++   L L  +T  L
Sbjct: 185 VVGVDSLDELLAEADILTLHLPLTPETRGL 214

Length = 324

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  105 bits (264), Expect = 1e-26
 Identities = 49/208 (23%), Positives = 92/208 (44%), Gaps = 28/208 (13%)

Query: 39  IQVDVVPISDVPDVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATR 97
            + D+ P +++ + + +   +      R+D+  + +   +KLI     G + VD+ AA  
Sbjct: 28  YEDDLTPDTELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKE 87

Query: 98  CGIKVARIPGDVTGNAASCAELTIYLMLGLLRK--QNEMRMA----IEQKKLGVPTGETL 151
            GI V  +PG  T    + AE  + L+L L R+  + + R+               G  L
Sbjct: 88  RGITVTNVPGYST---EAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDL 144

Query: 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD 211
            GKT+ I+G G IG  +A+RL+ FG+K++   RS                 N   +  + 
Sbjct: 145 RGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRS----------------PNPEAEKELG 188

Query: 212 EKGCHEDIFEFASKADVVVCCLSLNKQT 239
            +  + D+ E  +++D++     L  +T
Sbjct: 189 AR--YVDLDELLAESDIISLHCPLTPET 214

Length = 324

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  102 bits (257), Expect = 1e-25
 Identities = 55/216 (25%), Positives = 94/216 (43%), Gaps = 41/216 (18%)

Query: 36  YPSIQVDVVPISD--VPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDIN 93
              +  +V  + D    + + +  + V   +  +   ++   ++KLI     G++ + + 
Sbjct: 19  LEGLYAEVPELPDEAAEEALEDADVLVGGRLTKEEA-LAALKRLKLIQVPSAGVDHLPL- 76

Query: 94  AATRCGIKVARIPGDVT-----GNAASCAELTIYLMLGLLRK----QNEMRMAI-EQKKL 143
                     R+P  V      GN+ + AE  + L+L L ++     N++R  I   +  
Sbjct: 77  ---------ERLPEGVVVANNHGNSPAVAEHALALILALAKRIVEYDNDLRRGIWHGRAG 127

Query: 144 GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKN 203
             P  + L GKTV ILG+G+IG E+A+ L+ FG+++I   RS                  
Sbjct: 128 EEPESKELRGKTVGILGYGHIGREIARLLKAFGMRVIGVSRS------------------ 169

Query: 204 GIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT 239
              D+  D  G   D+ E   +ADVVV  L L KQT
Sbjct: 170 PKEDEGADFVGTLSDLDEALEQADVVVVALPLTKQT 205

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  100 bits (251), Expect = 6e-25
 Identities = 69/240 (28%), Positives = 106/240 (44%), Gaps = 42/240 (17%)

Query: 14  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISD---VPDVIANYHLCVVKTM-RLDSN 69
           +VL   P          E L+    I+VDV P      +  +IA+    +V++  ++ + 
Sbjct: 1   KVLVTDPIDEEGL----ELLREA-GIEVDVAPGLSEEELLAIIADADALIVRSATKVTAE 55

Query: 70  CISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR 129
            I  A ++K+I + GVG++ +D+ AAT  GI V   PG    N  S AE TI LML L R
Sbjct: 56  VIEAAPRLKVIGRAGVGVDNIDVEAATARGILVVNAPG---ANTISVAEHTIALMLALAR 112

Query: 130 KQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184
              +   ++     ++KK     G  L GKT+ I+G G IG E+A+R R FG+K++A   
Sbjct: 113 NIPQADASLRAGKWDRKKF---MGVELRGKTLGIVGLGRIGREVARRARAFGMKVLAYDP 169

Query: 185 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE--DIFEFASKADVVVCCLSLNKQTVKL 242
                                I       G  E   + E  ++AD +     L  +T  L
Sbjct: 170 --------------------YISAERAAAGGVELVSLDELLAEADFISLHTPLTPETRGL 209

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score = 95.3 bits (238), Expect = 4e-23
 Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 16/161 (9%)

Query: 31  EYLQNYPSIQVDVVPISD---VPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVG 86
           E L+     +VD  P+     + + I +Y + +V++  ++    I  A  +K+I + GVG
Sbjct: 15  EKLEE-AGFEVDYEPLIAKEELLEKIKDYDVLIVRSRTKVTKEVIDAAKNLKIIARAGVG 73

Query: 87  LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK----QNEMRMAI-EQK 141
           L+ +D+  A + GIKV   PG    ++ S AEL I LML L R       EM++    +K
Sbjct: 74  LDNIDVEYAKKKGIKVINTPG---ASSNSVAELVIGLMLSLARFIHRANREMKLGKWNKK 130

Query: 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
           K     G  L GKT+ I+GFG IG E+AK  R  G+ +IA 
Sbjct: 131 KY---KGIELRGKTLGIIGFGRIGREVAKIARALGMNVIAY 168

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score = 95.2 bits (238), Expect = 5e-23
 Identities = 51/191 (26%), Positives = 83/191 (43%), Gaps = 26/191 (13%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L    T ++D+  +  A  +K+I  + VG + +D++AA   GI V   P  +T    + A
Sbjct: 47  LLCTLTDKIDAELLDAAPPLKVIANYSVGYDHIDVDAAKARGIPVTNTPDVLT---DATA 103

Query: 118 ELTIYLMLGLLRKQNEM-RMAIEQKKLGV-PT---GETLLGKTVFILGFGNIGVELAKRL 172
           +L   L+L   R+  E  R     +  G  PT   G  L GKT+ I+G G IG  +A+R 
Sbjct: 104 DLAFALLLAAARRVVEGDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRA 163

Query: 173 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232
           + FG+KI+   R     S+       L  +             +  + E  +++D V   
Sbjct: 164 KGFGMKILYHNR-----SRKPEAEEELGAR-------------YVSLDELLAESDFVSLH 205

Query: 233 LSLNKQTVKLC 243
             L  +T  L 
Sbjct: 206 CPLTPETRHLI 216

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score = 93.9 bits (234), Expect = 2e-22
 Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 17/174 (9%)

Query: 15  VLFCGPHFPASHNYTKEYLQNYPSIQV-DVVPISDVPDVIANYH-LCVVKTMRLDSNCIS 72
           VL   P          E L+    ++V D +   ++ +   +   L V  T  + +  + 
Sbjct: 1   VLITDP----LRPEELELLKEGGEVEVHDELLTEELLEAAKDADALIVRSTTPVTAEVLE 56

Query: 73  RANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN 132
            A  +K+I + GVG++ +D++AAT  GI V  +PG    +  S AELT+ L+L L R+  
Sbjct: 57  AAPGLKVIARRGVGVDNIDLDAATERGILVTNVPG---YSTESVAELTVGLILALARRIP 113

Query: 133 EMRMAIEQKKLGV-----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           E   A    + G      P G  L GKT+ ++G G IG   A   +  G+ ++A
Sbjct: 114 E---ADASVRAGDWKKGGPIGLELYGKTLGVIGGGGIGGIGAAIAKALGMGVVA 164

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score = 92.8 bits (232), Expect = 2e-21
 Identities = 62/164 (37%), Positives = 90/164 (54%), Gaps = 23/164 (14%)

Query: 31  EYLQNYPSIQVDVVPISDVP---DVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGVG 86
           E L++ P ++VDV    D     ++I +Y   +V++  ++ +  +  A  +K+I + GVG
Sbjct: 15  EILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVG 74

Query: 87  LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR---------KQNEMRMA 137
           ++ VD+ AATR GI V   P   TGN  S AE TI LML L R         K  +    
Sbjct: 75  VDNVDVPAATRRGIIVVNAP---TGNTISAAEHTIALMLALARNIPQAHASLKAGKW--- 128

Query: 138 IEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
            E+KK     G  L GKT+ I+G G IG E+AKR + FG+K+IA
Sbjct: 129 -ERKKF---MGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIA 168

Length = 526

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 90.8 bits (226), Expect = 2e-21
 Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 25/187 (13%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L    +  +D   I  A  +K+I  +G G + +D++ A   GI V   P   T      A
Sbjct: 47  LITPLSTPVDKEIIDAAKNLKIIANYGAGFDNIDVDYAKEKGIPVTNTPAVST---EPTA 103

Query: 118 ELTIYLMLGLLRKQNEM-RMAIEQKKLGVP----TGETLLGKTVFILGFGNIGVELAKRL 172
           ELT  L+L L R+  E  R+      LG       G  L GKT+ I+G G IG  +A+R 
Sbjct: 104 ELTFGLILALARRIAEGDRLMRRGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARRA 163

Query: 173 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232
           + FG+KI+   R    H         L      +D+L+              ++D V   
Sbjct: 164 KAFGMKILYYNR----HRLSEETEKELGATYVDLDELL-------------KESDFVSLH 206

Query: 233 LSLNKQT 239
                +T
Sbjct: 207 APYTPET 213

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score = 90.1 bits (224), Expect = 2e-20
 Identities = 52/181 (28%), Positives = 89/181 (49%), Gaps = 28/181 (15%)

Query: 14  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP-------ISDVPDVIANYHLCVVKTM-R 65
           +VL   P          + L++   ++VDV         +  +PD    Y   +V++  +
Sbjct: 1   KVLIADP----ISPDGIDILED-VGVEVDVQTGLSREELLEIIPD----YDALIVRSATK 51

Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           +    I+ A ++K+I + GVG++ +DI AAT  GI V   P   TGN  S AE  + ++L
Sbjct: 52  VTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAP---TGNTISAAEHALAMLL 108

Query: 126 GLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
              R   +   ++     ++K      G  L GKT+ ++G G IG  +AKR + FG+K++
Sbjct: 109 AAARNIPQADASLKEGEWDRKAF---MGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVL 165

Query: 181 A 181
           A
Sbjct: 166 A 166

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score = 87.5 bits (218), Expect = 3e-20
 Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 29/183 (15%)

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
             L +  I+    ++LI  FGVG +G+D++AA   GI+V   PG         A+L + L
Sbjct: 52  TGLSAALIAALPALELIASFGVGYDGIDLDAARARGIRVTNTPGV---LTDDVADLAVGL 108

Query: 124 MLGLLRK--QNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI 179
           +L +LR+    + R     +  K   P    + GK V I+G G IG  +A+RL  FG++I
Sbjct: 109 LLAVLRRIPAAD-RFVRAGRWPKGAFPLTRKVSGKRVGIVGLGRIGRAIARRLEAFGMEI 167

Query: 180 IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT 239
                ++                       V  +  +  + E A+++DV+V        T
Sbjct: 168 -----AYHGRRPK---------------PDVPYR-YYASLLELAAESDVLVVACPGGPAT 206

Query: 240 VKL 242
             L
Sbjct: 207 RHL 209

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 86.4 bits (215), Expect = 9e-20
 Identities = 47/140 (33%), Positives = 67/140 (47%), Gaps = 15/140 (10%)

Query: 51  DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGV---GLEGVDINAATRCGIKVARIPG 107
           + + +  + +     +    I  A ++KLI   GV   G E VD+ AAT  GI V   PG
Sbjct: 42  EALKDADILITHFAPVTKKVIEAAPKLKLI---GVCRGGPENVDVEAATERGIPVLNTPG 98

Query: 108 DVTGNAASCAELTIYLMLGLLRK----QNEMRMAIEQKKL--GVPTGETLLGKTVFILGF 161
               NA + AE T+ LML   R        ++    +K        G  L GKTV I+GF
Sbjct: 99  R---NAEAVAEFTVGLMLAETRNIARAHAALKDGEWRKDYYNYDGYGPELRGKTVGIVGF 155

Query: 162 GNIGVELAKRLRPFGVKIIA 181
           G IG  +AKRL+ FG +++ 
Sbjct: 156 GAIGRRVAKRLKAFGAEVLV 175

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score = 86.4 bits (215), Expect = 9e-20
 Identities = 45/224 (20%), Positives = 85/224 (37%), Gaps = 25/224 (11%)

Query: 21  HFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLI 80
             P    + +      P  ++ VV   ++ + +A+    V+         +  A +++ I
Sbjct: 6   LSPLDDEHLERLRAAAPGAELRVVTAEELTEELADAD--VLLGNPPLPELLPAAPRLRWI 63

Query: 81  MQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAASCAELTIYLMLGLLRKQNEMRMAIE 139
                G++ +         + +        G      AE  +  ML   RK         
Sbjct: 64  QSTSAGVDALLFPELLERDVVLTN----ARGIFGPPIAEYVLGYMLAFARKLPRYARNQA 119

Query: 140 QKK-LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSA 198
           +++         L GKTV I+G G+IG E+A+R + FG+++I  +RS      V      
Sbjct: 120 ERRWQRRGPVRELAGKTVLIVGLGDIGREIARRAKAFGMRVIGVRRSGRPAPPV------ 173

Query: 199 LAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKL 242
                  +D++       +++ E   +AD VV  L L  +T  L
Sbjct: 174 -------VDEVYTP----DELDELLPEADYVVNALPLTPETRGL 206

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score = 85.7 bits (213), Expect = 2e-19
 Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 30/169 (17%)

Query: 78  KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMA 137
           K+I   G G + +D++A T+ GI+V+  PG V     + A+  ++L+LG LR  +    +
Sbjct: 78  KIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVD---EATADTALFLILGALRNFSRAERS 134

Query: 138 IEQKKLGVPTGETLL-------GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS 190
               + G   G   L       GKT+ ILG G IG  +A++   FG+KII   RS     
Sbjct: 135 A---RAGKWRGFLDLTLAHDPRGKTLGILGLGGIGKAIARKAAAFGMKIIYHNRSRL--- 188

Query: 191 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT 239
                   L                +  + E  +++DVV     L   T
Sbjct: 189 -----PEELEKALATY---------YVSLDELLAQSDVVSLNCPLTAAT 223

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 84.7 bits (210), Expect = 5e-19
 Identities = 43/109 (39%), Positives = 64/109 (58%), Gaps = 6/109 (5%)

Query: 78  KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMA 137
           KLI + G+G + VD+ AAT  G+ V R+PG V     + AE  + L+L +LRK N+   A
Sbjct: 71  KLIARHGIGYDNVDLKAATEHGVIVTRVPGAV--ERDAVAEHAVALILTVLRKINQASEA 128

Query: 138 IEQKKLGVPT---GETLLGKTVFILGFGNIGVELAKRLRP-FGVKIIAT 182
           +++ K        G  L GKTV I+G+GNIG  +A+ L+  F  K++A 
Sbjct: 129 VKEGKWTERANFVGHELSGKTVGIIGYGNIGSRVAEILKEGFNAKVLAY 177

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 81.6 bits (202), Expect = 5e-18
 Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 19/154 (12%)

Query: 39  IQVDVVPIS---DVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINA 94
            +VD  P     ++  +I  Y   ++++   +D   I +A  +K I + G GLE +D+  
Sbjct: 21  FEVDYDPTISREEILAIIPQYDGLIIRSRFPIDKEFIEKATNLKFIARAGAGLENIDLEY 80

Query: 95  ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN----EMRMAI---EQKKLGVPT 147
           A   GI++   P    GN  +  E  + ++L L  K N    E+R  I   E  +     
Sbjct: 81  AKEKGIELFNAP---EGNRDAVGEHALGMLLALFNKLNRADQEVRNGIWDREGNR----- 132

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           G  L+GKTV I+G+GN+G   AKRL  FG K+IA
Sbjct: 133 GVELMGKTVGIIGYGNMGKAFAKRLSGFGCKVIA 166

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score = 80.4 bits (199), Expect = 1e-17
 Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 24/186 (12%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L      R+D++ +    ++K+I     G +  D+ A T  GI V  +P  +T      A
Sbjct: 48  LMAFMPDRIDADFLDACPRLKIIACALKGYDNFDVEACTARGIWVTIVPDLLT---EPTA 104

Query: 118 ELTIYLMLGLLRKQNEMRMAIEQKKLG--VPT--GETLLGKTVFILGFGNIGVELAKRLR 173
           ELTI L++GL R        +   K G   P   G  L GKTV ILG G +G  +A+RL 
Sbjct: 105 ELTIGLLIGLGRHILAGDRFVRSGKFGGWRPKFYGTGLDGKTVGILGMGALGRAIARRLS 164

Query: 174 PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 233
            FG  ++     +  H     +  AL ++   +D+L+               +D +V  L
Sbjct: 165 GFGATLLY----YDPHPLDQAEEQALNLRRVELDELL-------------ESSDFLVLAL 207

Query: 234 SLNKQT 239
            L   T
Sbjct: 208 PLTPDT 213

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score = 76.4 bits (189), Expect = 5e-17
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 23/122 (18%)

Query: 121 IYLMLGLLRKQNEMRMAIEQKKL--GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVK 178
           + L+L L R+  E    +   +       G  L GKTV I+G G IG  +A+RL+ FG+K
Sbjct: 1   LALLLALARRIPEADRQVRAGRWRPDALLGRELSGKTVGIIGLGRIGRAVARRLKAFGMK 60

Query: 179 IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH-EDIFEFASKADVVVCCLSLNK 237
           +IA  R                          +  G     + E  +++DVV   L L  
Sbjct: 61  VIAYDRY--------------------PKAEAEALGARYVSLDELLAESDVVSLHLPLTP 100

Query: 238 QT 239
           +T
Sbjct: 101 ET 102

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score = 77.6 bits (192), Expect = 1e-16
 Identities = 47/199 (23%), Positives = 83/199 (41%), Gaps = 38/199 (19%)

Query: 51  DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG--- 107
           D +   +        + +  I    ++K+I+++GVG++ VD+ AAT  GI V  +P    
Sbjct: 46  DALLVQYA------PVTAEVIEALPRLKVIVRYGVGVDNVDVAAATERGIPVCNVPDYCT 99

Query: 108 -DVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLL---GKTVFILGFGN 163
            +V       A+  + L+L L RK   +  A+         G  +    G T+ ++GFG 
Sbjct: 100 EEV-------ADHALALILALARKLPFLDRAVRAGGWDWTVGGPIRRLRGLTLGLVGFGR 152

Query: 164 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA 223
           IG  +AKR + FG ++IA                   V +G+           +++    
Sbjct: 153 IGRAVAKRAKAFGFRVIAYDPY---------------VPDGVAALGGVRVVSLDELLA-- 195

Query: 224 SKADVVVCCLSLNKQTVKL 242
            ++DVV     L  +T  L
Sbjct: 196 -RSDVVSLHCPLTPETRHL 213

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score = 75.7 bits (187), Expect = 6e-16
 Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 35/191 (18%)

Query: 74  ANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK--- 130
           A  +K I + G G+  +D++AA++ GI V   PG    NA + AEL I +ML L R    
Sbjct: 48  APSLKAIARAGAGVNNIDVDAASKRGIVVFNTPG---ANANAVAELVIAMMLALSRNIIQ 104

Query: 131 ---------QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
                     +++   +E+ K      E L GKT+ ++G GNIG  +A      G+K+I 
Sbjct: 105 AIKWVTNGDGDDISKGVEKGKKQFVGTE-LRGKTLGVIGLGNIGRLVANAALALGMKVIG 163

Query: 182 TKRSWASHSQVSCQSSALAVKNGII--DDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT 239
                     +S + +A  +   +     L       E++    + AD +   + L  +T
Sbjct: 164 YDPY------LSVE-AAWKLSVEVQRVTSL-------EELL---ATADYITLHVPLTDET 206

Query: 240 VKLCSSSLSSK 250
             L ++ L +K
Sbjct: 207 RGLINAELLAK 217

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score = 75.6 bits (186), Expect = 7e-16
 Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 15/151 (9%)

Query: 44  VPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVA 103
           V +  V DV A   L  + + R+D      A +++++  + VG + +D+  ATR GI V 
Sbjct: 38  VLLEKVRDVDA---LVTMLSERIDCEVFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVT 94

Query: 104 RIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI---EQKKLGVP------TGETLLGK 154
             PG +T  A   A+    L+L   R+  E    +   E K+ GV        G  + GK
Sbjct: 95  NTPGVLT-EAT--ADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGK 151

Query: 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
           T+ I+GFG IG  +A+R + FG++I+   R+
Sbjct: 152 TIGIIGFGRIGQAVARRAKGFGMRILYYSRT 182

Length = 333

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score = 75.2 bits (186), Expect = 8e-16
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 20/138 (14%)

Query: 60  VVKTMR----LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAAS 115
            +  MR      +  + R   +KL++  G+    +D+ AA   GI V    G  T    +
Sbjct: 49  AIVLMRERTPFPAALLERLPNLKLLVTTGMRNASIDLAAAKERGIVVCGTGGGPT----A 104

Query: 116 CAELTIYLMLGLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR 171
            AELT  L+L L R        +R    Q  LG      L GKT+ I+G G IG  +A+ 
Sbjct: 105 TAELTWALILALARNLPEEDAALRAGGWQTTLGT----GLAGKTLGIVGLGRIGARVARI 160

Query: 172 LRPFGVKIIATKRSWASH 189
            + FG+++IA    W+S+
Sbjct: 161 GQAFGMRVIA----WSSN 174

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score = 74.7 bits (184), Expect = 2e-15
 Identities = 59/195 (30%), Positives = 86/195 (44%), Gaps = 45/195 (23%)

Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAASCAELTIYLMLGLLR 129
           I++A  +KL +  G+G + VD+ AA   GI VA    +VTG N  S AE  + ++L L+R
Sbjct: 79  IAKAKNLKLALTAGIGSDHVDLQAANDRGITVA----EVTGSNVVSVAEHVVMMILILVR 134

Query: 130 K-QNEMRMAIEQKKLGVPTGE-----------TLLGKTVFILGFGNIGVELAKRLRPFGV 177
                   AIE        G             L GKTV  +G G IG+ + +RL+PF V
Sbjct: 135 NYVPGHEQAIE--------GGWNVADVVKRAYDLEGKTVGTVGAGRIGLRVLRRLKPFDV 186

Query: 178 KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC--HEDIFEFASKADVVVCCLSL 235
            ++   R    H                 +++  E G   H D+ +  SK DVV     L
Sbjct: 187 HLLYYDR----HRLP--------------EEVEKELGLTRHADLEDMVSKCDVVTINCPL 228

Query: 236 NKQTVKLCSSSLSSK 250
           + +T  L +  L SK
Sbjct: 229 HPETEGLFNKELLSK 243

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score = 72.7 bits (179), Expect = 7e-15
 Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 16/179 (8%)

Query: 13  TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHL-------CVVKTMR 65
            +VL    +        KE L+      VDV  ++ + +      L           T +
Sbjct: 1   MKVLIYD-YRDDELEIEKEILKAGG---VDVEIVTYLLNDDETAELAKGADAILTAFTDK 56

Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           +D+  + +A  +K I     G + +D++ A   GI V  +P        + AE TI L+L
Sbjct: 57  IDAELLDKAPGLKFISLRATGYDNIDLDYAKELGIGVTNVPEYSPN---AVAEHTIALIL 113

Query: 126 GLLRKQ--NEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
            LLR +   + R   +  +     G  L  +TV ++G G IG  +A+R + FG+K+IA 
Sbjct: 114 ALLRNRKYIDERDKNQDLQDAGVIGRELEDQTVGVVGTGKIGRAVAQRAKGFGMKVIAY 172

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 56/198 (28%), Positives = 84/198 (42%), Gaps = 43/198 (21%)

Query: 52  VIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG 111
           +IAN        M L    I     +K+I     G++ VD+ A    GI V+        
Sbjct: 53  MIAN--------MPLPGEVIEACKNLKMISVAFTGVDHVDLEACKERGITVS-------- 96

Query: 112 NAA-----SCAELTIYLMLGLLRK--QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNI 164
           NAA     + AELTI L + LLR     +  +     K G+  G  L GKTV I+G G I
Sbjct: 97  NAAGYSTEAVAELTIGLAIDLLRNIVPCDAAVRAGGTKAGL-IGRELAGKTVGIVGTGAI 155

Query: 165 GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS 224
           G+ +A+  + FG K++A  RS                K       ++    +  + E  +
Sbjct: 156 GLRVARLFKAFGCKVLAYSRS---------------EKEEAKALGIE----YVSLDELLA 196

Query: 225 KADVVVCCLSLNKQTVKL 242
           ++D+V   L LN +T  L
Sbjct: 197 ESDIVSLHLPLNDETKGL 214

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 69.2 bits (170), Expect = 1e-13
 Identities = 37/128 (28%), Positives = 47/128 (36%), Gaps = 19/128 (14%)

Query: 113 AASCAELTIYLMLGLLRKQNEMRMAIE-QKKLGVPTGETLLGKTVFILGFGNIGVELAKR 171
           A + AE  + L+L  LR+      A              L G TV I+G G IG  L   
Sbjct: 84  AETVAEHALALLLAGLRQLPARARATTWDPAEEDDLVTLLRGSTVAIVGAGGIGRALIPL 143

Query: 172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231
           L PFG K+IA  RS                  G   +  DE    + + E    AD VV 
Sbjct: 144 LAPFGAKVIAVNRS------------------GRPVEGADETVPADRLDEVWPDADHVVL 185

Query: 232 CLSLNKQT 239
              L  +T
Sbjct: 186 AAPLTPET 193

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 64.4 bits (158), Expect = 4e-12
 Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 13/130 (10%)

Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
            LD+  +++   +KLI     G   VD+ AA   GI V  +PG  T    S A+ T  L+
Sbjct: 54  VLDAEVLAQLPNLKLIGVLATGYNNVDLAAAKERGITVTNVPGYST---DSVAQHTFALL 110

Query: 125 LGLLRKQNEMRMAIEQKK---------LGVPTGETLLGKTVFILGFGNIGVELAKRLRPF 175
           L L R        ++  +            P  E L GKT+ I+G+GNIG  +A+  R F
Sbjct: 111 LALARLVAYHNDVVKAGEWQKSPDFCFWDYPIIE-LAGKTLGIIGYGNIGQAVARIARAF 169

Query: 176 GVKIIATKRS 185
           G+K++  +R 
Sbjct: 170 GMKVLFAERK 179

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score = 64.7 bits (158), Expect = 6e-12
 Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 15/122 (12%)

Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAASCAELTIYLMLGLLR 129
           I++A  +KL +  G+G + VD+ AA+  GI VA    +VTG N+ S AE  + ++L L+R
Sbjct: 109 IAKAPNLKLAITAGIGSDHVDLQAASEHGITVA----EVTGSNSISVAEHVVMMILALVR 164

Query: 130 KQNEMRMAIEQKKLG-------VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
                  +  Q   G       V     L G TV I+G G IG+ + +RL+PF VK+  T
Sbjct: 165 NYEP---SHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYT 221

Query: 183 KR 184
            R
Sbjct: 222 DR 223

Length = 385

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 40/151 (26%), Positives = 60/151 (39%), Gaps = 35/151 (23%)

Query: 102 VARIPGDVT-GNA-----ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKT 155
           +  +P  VT  NA     AS AEL + L+L  LR       A  + +       +L  + 
Sbjct: 75  LPLLPEGVTLCNARGVHDASTAELAVALILASLRGLPRFVRAQARGRWEPRRTPSLADRR 134

Query: 156 VFILGFGNIGVELAKRLRPFGVKIIATKRS----WASHSQVSCQSSALAVKNGIIDDLVD 211
           V I+G+G+IG  + +RL PF V++    R+       H                ID+L  
Sbjct: 135 VLIVGYGSIGRAIERRLAPFEVRVTRVARTARPGEQVHG---------------IDELP- 178

Query: 212 EKGCHEDIFEFASKADVVVCCLSLNKQTVKL 242
                        +ADVVV  + L  +T  L
Sbjct: 179 ---------ALLPEADVVVLIVPLTDETRGL 200

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 25/153 (16%)

Query: 94  AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ-KKLGVPT---GE 149
           A    GI V     D   NA   AE T+  +L  LR+      A    +  G PT   G 
Sbjct: 90  AVWERGILVTS-AADA--NAEPVAEFTLAAILLALRRIPRFAAAYRAGRDWGWPTRRGGR 146

Query: 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL 209
            L G+TV I+GFG IG  + + LRPFG++++     +   ++     +AL V        
Sbjct: 147 GLYGRTVGIVGFGRIGRAVVELLRPFGLRVLVYDP-YLPAAEA----AALGV-------- 193

Query: 210 VDEKGCHEDIFEFASKADVVVCCLSLNKQTVKL 242
             E    +++    +++DVV     L  +T  +
Sbjct: 194 --ELVSLDELL---ARSDVVSLHAPLTPETRGM 221

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 11/129 (8%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           + V    RLD+  + +  ++KLI     G + +D+ A    GI V  +P    G A + A
Sbjct: 45  ISVFVYSRLDAEVLEKLPRLKLIATRSTGFDHIDLEACRERGIAVCNVPD--YGEA-TVA 101

Query: 118 ELTIYLMLGLLRKQNEM-----RMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           E    L+L L RK  E      R    Q  L    G  L GKT+ ++G G IG  +A+  
Sbjct: 102 EHAFALLLALSRKLREAIERTRRGDFSQAGL---RGFELAGKTLGVVGTGRIGRRVARIA 158

Query: 173 RPFGVKIIA 181
           R FG+K++A
Sbjct: 159 RGFGMKVLA 167

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score = 60.6 bits (147), Expect = 1e-10
 Identities = 51/184 (27%), Positives = 75/184 (40%), Gaps = 45/184 (24%)

Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAASCAELTIYLMLGLLR 129
           I +A  ++L++  G+G + +D+ AA   G+ VA    +VTG N  S AE  +  +L LLR
Sbjct: 116 IKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVA----EVTGSNVVSVAEDELMRILILLR 171

Query: 130 K-QNEMRMAIEQKKLGVPTGE-----------TLLGKTVFILGFGNIGVELAKRLRPFGV 177
                    +         GE            L GKTV  +G G IG  L +RL+PF  
Sbjct: 172 NFLPGYHQVVS--------GEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 223

Query: 178 KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC--HEDIFEFASKADVVVCCLSL 235
            ++   R                    +  +L  E G    ED+     K DVVV    L
Sbjct: 224 NLLYHDR------------------LKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPL 265

Query: 236 NKQT 239
            ++T
Sbjct: 266 TEKT 269

Length = 386

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 6/99 (6%)

Query: 85  VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM--RMAIEQKK 142
           +G + +D++AA   GIKV     +VT +  S A+ T+ LML  LRK  ++  R  +    
Sbjct: 77  IGYDHIDLDAAKELGIKV----SNVTYSPNSVADYTVMLMLMALRKYKQIMKRAEVNDYS 132

Query: 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           LG   G  L   TV ++G G IG  + K L  FG KI+A
Sbjct: 133 LGGLQGRELRNLTVGVIGTGRIGQAVIKNLSGFGCKILA 171

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score = 58.7 bits (143), Expect = 5e-10
 Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 32/175 (18%)

Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
           +++   +K I  +  G++ + +    + GI +    G    ++   AE  +  +L + + 
Sbjct: 55  LAKMKNLKWIQLYSAGVDYLPLEYIKKKGILLTNNSG---IHSIPIAEWIVGYILEIYKG 111

Query: 131 QNEMRMAIEQKK----LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186
              ++ A + +K        +   L GKT+  LG G+IG E+AKRL+ FG+K+I    S 
Sbjct: 112 ---LKKAYKNQKEKKWKMDSSLLELYGKTILFLGTGSIGQEIAKRLKAFGMKVIGVNTS- 167

Query: 187 ASHSQVSCQSSALAVKNGIIDDLVDEKGCH--EDIFEFASKADVVVCCLSLNKQT 239
                         V+        D+  C+  E++ E   +AD+VV  L L ++T
Sbjct: 168 -GR----------DVEY------FDK--CYPLEELDEVLKEADIVVNVLPLTEET 203

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score = 57.8 bits (140), Expect = 9e-10
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 20/144 (13%)

Query: 46  ISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARI 105
           +      I+N      K   LD+  ++ A Q+KLI+    G   VD+ AA   GI V   
Sbjct: 43  LRGAQVAISN------KVA-LDAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNC 95

Query: 106 PGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK---------LGVPTGETLLGKTV 156
            G  T    S A+ T+ L+L L  +  + + A+   +         L  P  E L GKT+
Sbjct: 96  QGYGT---PSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVE-LEGKTL 151

Query: 157 FILGFGNIGVELAKRLRPFGVKII 180
            +LG G +G  +A+    FG++++
Sbjct: 152 GLLGHGELGGAVARLAEAFGMRVL 175

Length = 317

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score = 57.1 bits (139), Expect = 2e-09
 Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 23/129 (17%)

Query: 65  RLDSNCISR--ANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAAS---CAEL 119
            LD+  + +     +KLI     G   VD+ AA   GI V R+P      A S    AE 
Sbjct: 55  DLDAPVLEKLAELGVKLIALRCAGFNNVDLKAAKELGITVVRVP------AYSPYAVAEH 108

Query: 120 TIYLMLGLLRK----QNEMRM---AIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
            + L+L L RK     N +R    +++    G+  G  L GKTV ++G G IG   A+ L
Sbjct: 109 AVALLLALNRKIHRAYNRVREGNFSLD----GL-LGFDLHGKTVGVIGTGKIGQAFARIL 163

Query: 173 RPFGVKIIA 181
           + FG +++A
Sbjct: 164 KGFGCRVLA 172

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 29/174 (16%)

Query: 74  ANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNE 133
              +K I     G++ +D++ A   G+K+  +P     +  + AE  +   L LLR   E
Sbjct: 66  EYGIKQIALRSAGVDMIDLDLAKENGLKITNVP---AYSPRAIAEFAVTQALNLLRNTPE 122

Query: 134 MRMAIEQKKLGVPTGETLLGK-----TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188
           +   + +       G  L+G+     TV I+G G IG   AK  + FG K+IA       
Sbjct: 123 IDRRVAKGDFRWAPG--LIGREIRDLTVGIIGTGRIGSAAAKIFKGFGAKVIAYDP---- 176

Query: 189 HSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKL 242
                         N  ++  +      ED+     +AD++   + L K+   L
Sbjct: 177 ------------YPNPELEKFLLYYDSLEDLL---KQADIISLHVPLTKENHHL 215

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score = 52.2 bits (126), Expect = 6e-08
 Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 26/178 (14%)

Query: 15  VLFCGPHFPASHNYTKEYLQNYPSIQVDVVPIS----DVPDVIANYHLCVV--KTMRLDS 68
           +L    H P++    +        I+V+ +  +    ++ + + + HL  +  KT +L  
Sbjct: 4   LLLENIH-PSADELFRAG-----GIEVERLKGALDEDELIEALKDVHLLGIRSKT-QLTE 56

Query: 69  NCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLL 128
             +  A ++  I  F +G   VD++AA + GI V   P     N  S AEL I  ++ L 
Sbjct: 57  EVLEAAPKLLAIGCFCIGTNQVDLDAAAKRGIPVFNAP---FSNTRSVAELVIGEIIMLA 113

Query: 129 R----KQNEMRMAIEQKKLGVPTG--ETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           R    +       I  K     TG  E + GKT+ I+G+G+IG +L+      G+++I
Sbjct: 114 RRLPDRNAAAHRGIWNK---SATGSHE-VRGKTLGIIGYGHIGSQLSVLAEALGMRVI 167

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 14/120 (11%)

Query: 78  KLIMQFGVGLEGVDIN-AATRCGIKVARIPGDVTG----NAASCAELTIYLMLGLLRKQN 132
           +L+  + +G +  D+  A  R G+    + G        N+    EL++  +   L  Q 
Sbjct: 89  RLLFTYTIGADHRDLTEALARAGLTAIAVEGVELPLLTSNSIGAGELSVQFIARFLEVQQ 148

Query: 133 EMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV 192
             R+       G P    + GKTV ++G G +G E A+ LR  G +++ T  +  +  Q+
Sbjct: 149 PGRLG------GAPD---VAGKTVVVVGAGVVGKEAAQMLRGLGAQVLITDINVEALEQL 199

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 27/154 (17%)

Query: 100 IKVARIPGDVT--GNAA----SCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG 153
           I V+ IP +V    NA     S AE    L+L   +   E    ++         + L  
Sbjct: 63  IDVSGIPENVVLCSNAGAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQSPTKLLYN 122

Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK 213
           K++ ILG+G IG  +A   + FG+ I A  RS+              V +G I  +  E 
Sbjct: 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSY--------------VNDG-ISSIYMEP 167

Query: 214 GCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSL 247
               DI +   K+D V+  L L  +T  + +S +
Sbjct: 168 E---DIMK---KSDFVLISLPLTDETRGMINSKM 195

Length = 303

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 18/136 (13%)

Query: 57  HLCVVKTMRLDSNCISRANQMKLIMQFG--------VGLEGVDINAATRCGIKVARIPGD 108
           H  V+    +  NC +    +++  ++G        VG   +D+ AA   G K+AR+P  
Sbjct: 45  HDAVI----VRGNCFADKENLEIYKEYGIKYVFTRTVGFNHIDLEAAKELGFKMARVPS- 99

Query: 109 VTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT---GETLLGKTVFILGFGNIG 165
            + NA   AEL   L + L R           K   V      + +   TV I+G G IG
Sbjct: 100 YSPNAI--AELAFTLAMTLSRHTAYTASRTANKNFKVDPFMFSKEIRNSTVGIIGTGRIG 157

Query: 166 VELAKRLRPFGVKIIA 181
           +  AK  +  G K+I 
Sbjct: 158 LTAAKLFKGLGAKVIG 173

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 9/78 (11%)

Query: 112 NAASCAELTIYLMLGLLRKQNEMRMAI----EQKKLGVPTGETLLGKTVFILGFGNIGVE 167
            A + AE  +  +L   ++  E+ +       ++ LG     +L G T+ I+GFG IG  
Sbjct: 95  AAEAIAEFVLAAILAAAKRLPEIWVKGAEQWRREPLG-----SLAGSTLGIVGFGAIGQA 149

Query: 168 LAKRLRPFGVKIIATKRS 185
           LA+R    G++++A +RS
Sbjct: 150 LARRALALGMRVLALRRS 167

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score = 46.0 bits (110), Expect = 8e-06
 Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 19/95 (20%)

Query: 86  GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV 145
           G + +D +     GI  A  PG    NA S AE   Y++  LL       +A  Q     
Sbjct: 67  GTDHIDTDYLKERGIGFANAPG---CNANSVAE---YVLSALLV------LAQRQ----- 109

Query: 146 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
             G +L GKTV I+G GN+G  LA+RL   G+ ++
Sbjct: 110 --GFSLKGKTVGIVGVGNVGSRLARRLEALGMNVL 142

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 12/95 (12%)

Query: 83  FGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNE----MRMAI 138
             VG   VD+ AA + GI V   PG +T    + AEL   L L   R+  E    MR  +
Sbjct: 93  MAVGYNNVDVEAANKYGIAVGNTPGVLT---ETTAELAASLSLAAARRIVEADEFMRAGL 149

Query: 139 EQKKLGVPT---GETLLGKTVFILGFGNIGVELAK 170
            +  L  P    G  L G+TV ++G G IG   A+
Sbjct: 150 YEGWL--PHLFVGNLLKGQTVGVIGAGRIGSAYAR 182

Length = 386

>gnl|CDD|133445 cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 11/73 (15%)

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 206
           G  L G  V I GFGN+G   A+ L   G K++A          VS     +   +G+ +
Sbjct: 26  GIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVA----------VSDSDGTIYNPDGLDV 75

Query: 207 DDLVDEKGCHEDI 219
             L+  K  H  +
Sbjct: 76  PALLAYKKEHGSV 88

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha -beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 227

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 11/80 (13%)

Query: 117 AELTIYLMLGLLRKQNEMRMAIEQKK----LG-----VPTGE--TLLGKTVFILGFGNIG 165
           AE T+ L+L  +R+ +EMR A  + +    LG      P G   TLLG  V I GFG+IG
Sbjct: 96  AEHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLLGARVLIWGFGSIG 155

Query: 166 VELAKRLRPFGVKIIATKRS 185
             LA  L   G ++    RS
Sbjct: 156 QRLAPLLTALGARVTGVARS 175

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 13/124 (10%)

Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           +D   +S+   +KLI     G   VDI  A + GI V  + G  T    S A+ T  ++L
Sbjct: 53  IDKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYST---ESVAQHTFAMLL 109

Query: 126 GLLRKQNEMRMAIEQKK---------LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 176
            LL + N     ++  +         +  P GE + GK   I+G G IG  +AK  + FG
Sbjct: 110 SLLGRINYYDRYVKSGEYSESPIFTHISRPLGE-IKGKKWGIIGLGTIGKRVAKIAQAFG 168

Query: 177 VKII 180
            K++
Sbjct: 169 AKVV 172

Length = 311

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 37/168 (22%), Positives = 60/168 (35%), Gaps = 33/168 (19%)

Query: 78  KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMA 137
           K I   G G++ +  +      + + R+     G A   AE   Y++  +LR   +M   
Sbjct: 60  KAIFSLGAGVDHLLADPDLP-DVPIVRLVDP--GLAQGMAE---YVLAAVLRLHRDMDRY 113

Query: 138 IEQ------KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ 191
             Q      K L            V +LG G +G  +A+RL   G  +    RS      
Sbjct: 114 AAQQRRGVWKPLPQRPAAER---RVGVLGLGELGAAVARRLAALGFPVSGWSRSPKDIEG 170

Query: 192 VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT 239
           V+C            + L            F ++ D++VC L L  +T
Sbjct: 171 VTCFHGE--------EGLDA----------FLAQTDILVCLLPLTPET 200

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 27/159 (16%)

Query: 117 AELTI--YLML--GLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           AE  I  +L+L    L+     +     ++    + E  +GK V ILG+G+IG + A+  
Sbjct: 93  AEWVIGTWLVLSHHFLQYIELQKEQTWGRRQEAYSVEDSVGKRVGILGYGSIGRQTARLA 152

Query: 173 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGII-------DDLVDEKGCH----EDIFE 221
           +  G+++ A  RS     + + +S      +G I       D  +            + E
Sbjct: 153 QALGMEVYAYTRS----PRPTPES---RKDDGYIVPGTGDPDGSIPSAWFSGTDKASLHE 205

Query: 222 F-ASKADVVVCCLSLNKQTVKLCSSS----LSSKSMFFA 255
           F     D++V  L L   T  L  +     L+ +  F +
Sbjct: 206 FLRQDLDLLVVSLPLTPATKHLLGAEEFEILAKRKTFVS 244

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 27/124 (21%), Positives = 57/124 (45%), Gaps = 13/124 (10%)

Query: 66  LDSNCISRANQM--KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           L        N++  K I Q   G +  D+  AT+  + ++ +P   + +  S AE T+  
Sbjct: 57  LSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVP---SYSPESIAEFTVTQ 113

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGK-----TVFILGFGNIGVELAKRL-RPFGV 177
            + L+R  N+++  +  ++        +L +      V ++G G IG+ +AK   + +G 
Sbjct: 114 AINLVRHFNQIQTKV--REHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGS 171

Query: 178 KIIA 181
            ++A
Sbjct: 172 DVVA 175

Length = 332

>gnl|CDD|237820 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 16/77 (20%)

Query: 156 VFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK 213
           V ++G G IG   AK LR  G+  +++A  R          +S  LAV  G+ID      
Sbjct: 6   VVVIGLGLIGGSFAKALRERGLAREVVAVDRR--------AKSLELAVSLGVIDR----- 52

Query: 214 GCHEDIFEFASKADVVV 230
              ED+ E  S ADV+V
Sbjct: 53  -GEEDLAEAVSGADVIV 68

Length = 735

>gnl|CDD|223411 COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 11/77 (14%)

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 206
           G+ L G  V + GFGN+G   A++L   G K++A          VS     +  ++G+ +
Sbjct: 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVA----------VSDSKGGIYDEDGLDV 251

Query: 207 DDLVDEKGCHEDIFEFA 223
           + L++ K     + E+A
Sbjct: 252 EALLELKERRGSVAEYA 268

Length = 411

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 27/180 (15%)

Query: 20  PHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKL 79
           P FP  H +  EY        ++    +D+  VI +      K +      +++  ++KL
Sbjct: 21  PSFP--HEWI-EYDHTSAEQTIERAKDADI--VITS------KVL-FTRETLAQLPKLKL 68

Query: 80  IMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGL-------LRKQN 132
           I     G   VD+ AA   GI V  + G  +    +  E  + ++  L        R Q 
Sbjct: 69  IAITATGTNNVDLVAAKELGIAVKNVTGYSS---TTVPEHVLGMIFALKHSLMGWYRDQL 125

Query: 133 EMRMAIEQKKLGV---PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH 189
             R A   K+      P  + + G T+ + G G +G E+ +  +  G+K++  +   AS 
Sbjct: 126 SDRWA-TCKQFCYFDYPITD-VRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV 183

Length = 314

>gnl|CDD|215789 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine dehydrogenase

 Score = 37.5 bits (88), Expect = 0.003
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 14/74 (18%)

Query: 141 KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALA 200
           KKLG   G++L GKTV + GFGN+G   A++L   G K++A          VS  S  + 
Sbjct: 23  KKLG---GDSLEGKTVAVQGFGNVGSYAAEKLLELGAKVVA----------VSDSSGYIY 69

Query: 201 VKNGI-IDDLVDEK 213
             NGI I++L++ K
Sbjct: 70  DPNGIDIEELLELK 83

Length = 237

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
PLN02928	347	oxidoreductase family protein	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PLN02306	386	hydroxypyruvate reductase	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
KOG0067	435	consensus Transcription factor CtBP [Transcription	99.87
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.84
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.78
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.67
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.64
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.54
PLN02494	477	adenosylhomocysteinase	99.49
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.36
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.36
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.23
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.18
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.18
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.11
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.09
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.04
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.0
PRK05225	487	ketol-acid reductoisomerase; Validated	98.98
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.98
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	98.93
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	98.92
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.91
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.87
PLN02712	667	arogenate dehydrogenase	98.85
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.81
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	98.81
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.79
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.75
PLN02256	304	arogenate dehydrogenase	98.73
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	98.71
PRK15059	292	tartronate semialdehyde reductase; Provisional	98.7
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.69
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.69
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	98.68
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.67
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.66
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.64
KOG0409	327	consensus Predicted dehydrogenase [General functio	98.63
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	98.63
PLN02858	1378	fructose-bisphosphate aldolase	98.63
PLN02858	1378	fructose-bisphosphate aldolase	98.63
PLN02712	667	arogenate dehydrogenase	98.61
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	98.58
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.55
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.53
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	98.53
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.53
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.53
PRK07417	279	arogenate dehydrogenase; Reviewed	98.51
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.51
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	98.5
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.48
PLN02688	266	pyrroline-5-carboxylate reductase	98.47
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.47
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.46
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	98.45
PRK06545	359	prephenate dehydrogenase; Validated	98.44
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.43
PRK08818	370	prephenate dehydrogenase; Provisional	98.43
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	98.42
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.41
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	98.41
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.4
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.39
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.38
PRK08655	437	prephenate dehydrogenase; Provisional	98.37
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.36
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.36
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.35
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.34
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.33
PLN00203	519	glutamyl-tRNA reductase	98.32
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.3
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.3
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.3
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.3
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.29
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.28
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.26
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.26
PRK08507	275	prephenate dehydrogenase; Validated	98.25
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.23
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.23
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	98.21
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.21
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.2
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	98.2
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	98.19
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.17
PRK07680	273	late competence protein ComER; Validated	98.16
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.15
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.15
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	98.15
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.13
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.13
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	98.12
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.1
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.1
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.09
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	98.09
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	98.08
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.07
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	98.06
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.05
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.05
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.02
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.02
PRK13940	414	glutamyl-tRNA reductase; Provisional	98.01
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.01
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.0
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	97.98
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.97
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.97
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.94
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.94
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	97.94
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	97.93
PRK07340	304	ornithine cyclodeaminase; Validated	97.93
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.92
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.92
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.92
PRK14982	340	acyl-ACP reductase; Provisional	97.92
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.91
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.91
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.91
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.91
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.9
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.9
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.89
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.89
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	97.88
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.88
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.88
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.88
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.84
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.84
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.83
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	97.83
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.82
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	97.82
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.81
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.81
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.77
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.76
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.76
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.75
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.75
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.73
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.72
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	97.71
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.71
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	97.71
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.71
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	97.71
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.7
PRK06141	314	ornithine cyclodeaminase; Validated	97.69
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	97.68
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.68
PRK13304	265	L-aspartate dehydrogenase; Reviewed	97.68
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.66
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.66
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.66
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.63
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.63
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.59
PRK08618	325	ornithine cyclodeaminase; Validated	97.57
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.56
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.55
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	97.54
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.53
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	97.52
PRK00779	304	ornithine carbamoyltransferase; Provisional	97.5
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	97.5
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.49
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.46
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	97.44
PLN02527	306	aspartate carbamoyltransferase	97.44
PRK06823	315	ornithine cyclodeaminase; Validated	97.42
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.42
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.4
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.37
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.34
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	97.34
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.33
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	97.32
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.32
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.32
PRK06046	326	alanine dehydrogenase; Validated	97.3
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.29
PRK02102	331	ornithine carbamoyltransferase; Validated	97.28
PRK14031	444	glutamate dehydrogenase; Provisional	97.27
PLN02342	348	ornithine carbamoyltransferase	97.24
PRK01713	334	ornithine carbamoyltransferase; Provisional	97.24
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.23
PRK09414	445	glutamate dehydrogenase; Provisional	97.23
PRK02255	338	putrescine carbamoyltransferase; Provisional	97.23
PLN02477	410	glutamate dehydrogenase	97.19
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.19
PRK11891	429	aspartate carbamoyltransferase; Provisional	97.18
PRK06407	301	ornithine cyclodeaminase; Provisional	97.18
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.14
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	97.12
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.12
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.11
PRK08291	330	ectoine utilization protein EutC; Validated	97.09
PRK06199	379	ornithine cyclodeaminase; Validated	97.09
PRK04284	332	ornithine carbamoyltransferase; Provisional	97.09
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	97.07
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.04
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	97.01
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.99
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	96.99
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.98
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	96.98
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	96.95
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	96.95
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	96.94
PTZ00117	319	malate dehydrogenase; Provisional	96.93
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	96.93
PRK07589	346	ornithine cyclodeaminase; Validated	96.92
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.91
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	96.9
PRK12861	764	malic enzyme; Reviewed	96.89
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.89
PRK08192	338	aspartate carbamoyltransferase; Provisional	96.87
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.87
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.87
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	96.85
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.83
PRK12862	763	malic enzyme; Reviewed	96.83
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	96.82
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	96.82
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	96.82
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.82
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.77
PRK14030	445	glutamate dehydrogenase; Provisional	96.76
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	96.76
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	96.75
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.74
PRK11730	715	fadB multifunctional fatty acid oxidation complex	96.71
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.68
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.63
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.61
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	96.61
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.61
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	96.6
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	96.6
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.59
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.58
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.55
PRK14804	311	ornithine carbamoyltransferase; Provisional	96.54
COG5322	351	Predicted dehydrogenase [General function predicti	96.54
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	96.52
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	96.5
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	96.49
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.49
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.49
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.47
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	96.46
PRK08328	231	hypothetical protein; Provisional	96.4
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	96.4
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	96.39
PRK06223	307	malate dehydrogenase; Reviewed	96.38
PRK06444	197	prephenate dehydrogenase; Provisional	96.38
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	96.35
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	96.34
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.33
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	96.31
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.29
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.28
PRK07411	390	hypothetical protein; Validated	96.27
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.27
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.27
PLN02948	577	phosphoribosylaminoimidazole carboxylase	96.26
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.25
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	96.22
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	96.22
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	96.19
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.19
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.17
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	96.14
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	96.14
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.11
PRK09496	453	trkA potassium transporter peripheral membrane com	96.1
COG0281	432	SfcA Malic enzyme [Energy production and conversio	96.09
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.07
PRK10637	457	cysG siroheme synthase; Provisional	96.03
PLN02353	473	probable UDP-glucose 6-dehydrogenase	96.02
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.02
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	96.01
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	96.0
PRK05086	312	malate dehydrogenase; Provisional	95.95
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.93
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	95.88
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	95.83
PRK13303	265	L-aspartate dehydrogenase; Provisional	95.81
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.8
PRK14805	302	ornithine carbamoyltransferase; Provisional	95.79
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.75
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.74
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.72
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	95.71
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	95.7
PRK06270	341	homoserine dehydrogenase; Provisional	95.7
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.68
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	95.65
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	95.65
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	95.63
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	95.63
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.62
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.59
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.57
PTZ00082	321	L-lactate dehydrogenase; Provisional	95.57
COG2910	211	Putative NADH-flavin reductase [General function p	95.56
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	95.55
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	95.52
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.52
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	95.5
PLN03129	581	NADP-dependent malic enzyme; Provisional	95.5
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.48
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	95.48
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.47
PRK08223	287	hypothetical protein; Validated	95.44
PRK10669	558	putative cation:proton antiport protein; Provision	95.42
PLN02586	360	probable cinnamyl alcohol dehydrogenase	95.41
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.39
PRK13529	563	malate dehydrogenase; Provisional	95.38
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	95.35
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.34
CHL00194	317	ycf39 Ycf39; Provisional	95.33
PLN00106	323	malate dehydrogenase	95.33
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	95.31
PRK11579	346	putative oxidoreductase; Provisional	95.28
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	95.27
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	95.24
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.23
PRK07806	248	short chain dehydrogenase; Provisional	95.23
PRK06128	300	oxidoreductase; Provisional	95.19
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.16
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	95.13
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.08
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.03
PRK08300	302	acetaldehyde dehydrogenase; Validated	95.02
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.01
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	95.01
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	94.99
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	94.99
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	94.98
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	94.96
PRK09496	453	trkA potassium transporter peripheral membrane com	94.91
PTZ00325	321	malate dehydrogenase; Provisional	94.9
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.9
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	94.89
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.86
PLN03209	576	translocon at the inner envelope of chloroplast su	94.81
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	94.81
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	94.78
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	94.76
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	94.74
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	94.73
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	94.67
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	94.66
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	94.61
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.61
PRK06523	260	short chain dehydrogenase; Provisional	94.6
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	94.55
PRK12742	237	oxidoreductase; Provisional	94.55
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	94.55
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	94.54
PRK08265	261	short chain dehydrogenase; Provisional	94.53
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	94.49
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.48
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	94.48
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.45
PRK07856	252	short chain dehydrogenase; Provisional	94.42
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	94.42
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	94.41
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	94.4
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	94.36
PLN02896	353	cinnamyl-alcohol dehydrogenase	94.35
PRK07523	255	gluconate 5-dehydrogenase; Provisional	94.35
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	94.33
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	94.32
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	94.29
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.28
PRK06701	290	short chain dehydrogenase; Provisional	94.26
PLN02383	344	aspartate semialdehyde dehydrogenase	94.26
PLN02514	357	cinnamyl-alcohol dehydrogenase	94.25
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	94.24
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	94.24
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	94.23
PLN02602	350	lactate dehydrogenase	94.22
PLN02178	375	cinnamyl-alcohol dehydrogenase	94.22
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	94.18
PLN02740	381	Alcohol dehydrogenase-like	94.18
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	94.17
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	94.15
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.14
PRK06398	258	aldose dehydrogenase; Validated	94.13
PLN02695	370	GDP-D-mannose-3',5'-epimerase	94.12
PRK07985	294	oxidoreductase; Provisional	94.09
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	94.06
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	94.06
PRK04148	134	hypothetical protein; Provisional	94.05
PRK06179	270	short chain dehydrogenase; Provisional	94.05
PRK09186	256	flagellin modification protein A; Provisional	94.01
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	94.0
PLN02214	342	cinnamoyl-CoA reductase	94.0
PRK06392	326	homoserine dehydrogenase; Provisional	93.99
PRK07877	722	hypothetical protein; Provisional	93.98
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	93.98
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	93.94
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	93.87
COG0673	342	MviM Predicted dehydrogenases and related proteins	93.87
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	93.86
PLN02780	320	ketoreductase/ oxidoreductase	93.86
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	93.82
PRK07326	237	short chain dehydrogenase; Provisional	93.81
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	93.76
PRK06172	253	short chain dehydrogenase; Provisional	93.76
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	93.74
PTZ00317	559	NADP-dependent malic enzyme; Provisional	93.7
KOG4230	935	consensus C1-tetrahydrofolate synthase [Coenzyme t	93.69
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.69
PRK07062	265	short chain dehydrogenase; Provisional	93.66
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.65
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	93.65
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	93.64
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	93.64
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	93.63
COG2344	211	AT-rich DNA-binding protein [General function pred	93.63
PRK12367	245	short chain dehydrogenase; Provisional	93.63
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	93.63
PRK10206	344	putative oxidoreductase; Provisional	93.62
PLN02427	386	UDP-apiose/xylose synthase	93.61
PRK05993	277	short chain dehydrogenase; Provisional	93.58
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	93.57
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	93.53
PLN02240	352	UDP-glucose 4-epimerase	93.52
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	93.52
PRK08324	681	short chain dehydrogenase; Validated	93.51
PRK08264	238	short chain dehydrogenase; Validated	93.5
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	93.44
PRK06182	273	short chain dehydrogenase; Validated	93.44
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	93.43
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	93.38
PRK12828	239	short chain dehydrogenase; Provisional	93.37
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	93.28
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.27
PRK06196	315	oxidoreductase; Provisional	93.26
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	93.23
PRK06349	426	homoserine dehydrogenase; Provisional	93.22
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	93.2
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	93.18
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	93.12
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	93.07
PRK14851	679	hypothetical protein; Provisional	93.07
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	93.03
TIGR00036	266	dapB dihydrodipicolinate reductase.	93.02
PRK06197	306	short chain dehydrogenase; Provisional	93.01
PRK10537	393	voltage-gated potassium channel; Provisional	93.0
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	92.99
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	92.99
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	92.98
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	92.96
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	92.95
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	92.95
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	92.94
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	92.93
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	92.91
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	92.87
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	92.87
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	92.83
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	92.83
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.73
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	92.7
PRK05854	313	short chain dehydrogenase; Provisional	92.66
PLN02827	378	Alcohol dehydrogenase-like	92.64

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-50  Score=368.56  Aligned_cols=234  Identities=27%  Similarity=0.368  Sum_probs=199.0

Q ss_pred             CcceEEEeCCCCCCchhhHHHHHhcCCCeEEe---eCCCCChhhhcCCceEEEEeCCCCCHHHHhcCCCceEEEEccccC
Q 024297           11 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVD---VVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGL   87 (269)
Q Consensus        11 ~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~   87 (269)
                      .+++++...+..+.   ..+.+... ...++.   ..+.+++.+.++++|++++..++++++.++.+|+||||++.++|+
T Consensus         2 ~~~~vl~~~~~~~~---~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~v~~~~l~~~~~Lk~I~~~g~Gv   77 (324)
T COG0111           2 MMIKVLVTDPLAPD---ALEELLAA-YDVEVPDGPDLDEEELLEALADADALIVSVTPVTEEVLAAAPNLKAIGRAGAGV   77 (324)
T ss_pred             CcceeeccCccCHH---HHHHHHhc-cccccccccccchHHHHhhcccCcEEEEecCCCCHHHHhhCCCceEEEEccccc
Confidence            36777877776543   23333333 222222   234455678899999877777999999999999999999999999


Q ss_pred             CccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC--CccccccCCEEEEEecCchH
Q 024297           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIG  165 (269)
Q Consensus        88 d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~g~~vgIiG~G~iG  165 (269)
                      |++|+++++++||.|+|+|+.   |+.+||||+++++|++.|+++.+++.++++.|..  ..+.+|+||||||||+|+||
T Consensus        78 d~id~~~~~~~gi~V~nap~~---na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG  154 (324)
T COG0111          78 DNIDLEAATKRGILVVNAPGG---NAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIG  154 (324)
T ss_pred             cccCHHHHhhcCCEEEeCCCc---chHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHH
Confidence            999999999999999999998   8899999999999999999999999999999986  45679999999999999999


Q ss_pred             HHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCH
Q 024297          166 VELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSS  245 (269)
Q Consensus       166 ~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~  245 (269)
                      +.+|+++++|||+|++||+...+..                 ..........+|+++|++||+|++|+|+|++|+++||+
T Consensus       155 ~~va~~l~afgm~v~~~d~~~~~~~-----------------~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~  217 (324)
T COG0111         155 RAVAKRLKAFGMKVIGYDPYSPRER-----------------AGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINA  217 (324)
T ss_pred             HHHHHHHHhCCCeEEEECCCCchhh-----------------hccccceecccHHHHHhhCCEEEEcCCCCcchhcccCH
Confidence            9999999999999999999554421                 11122224578999999999999999999999999999


Q ss_pred             HHHhhhCCCCcEEEEccCCCCccC
Q 024297          246 SLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       246 ~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      +.|+ +||+|++|||+|||++|||
T Consensus       218 ~~~a-~MK~gailIN~aRG~vVde  240 (324)
T COG0111         218 EELA-KMKPGAILINAARGGVVDE  240 (324)
T ss_pred             HHHh-hCCCCeEEEECCCcceecH
Confidence            9999 9999999999999999996

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=4.1e-50  Score=369.17  Aligned_cols=257  Identities=63%  Similarity=1.025  Sum_probs=214.4

Q ss_pred             CCCCCcceEEEeCCCCCCchhhHHHHHhcCCCeEEeeCCCCChhhhcCCceEEEEeCCCCCHHHHhcCCCceEEEEcccc
Q 024297            7 SSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVG   86 (269)
Q Consensus         7 ~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG   86 (269)
                      -|.+.++|||++.+.++....+.++++++++...+...+.+++.+.++++|+++++..+++++.++.+|+||||++.++|
T Consensus        13 ~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G   92 (347)
T PLN02928         13 HSDMRPTRVLFCGPEFPASYSYTREYLQKYPFIQVDAVAREDVPDVIANYDICVPKMMRLDADIIARASQMKLIMQFGVG   92 (347)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHhhcCCeeEecCCCHHHHHHHhcCCcEEEECCCCCCHHHHhcCCCceEEEECCcc
Confidence            35666888999988877655566777777776555555666788889999998877678999999999999999999999


Q ss_pred             CCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHH
Q 024297           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGV  166 (269)
Q Consensus        87 ~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~  166 (269)
                      +|++|++++.++||.|+|+|++.++|+.+||||+++++|+++|++..+.+.++++.|..+.+.++.||||||||+|+||+
T Consensus        93 ~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~  172 (347)
T PLN02928         93 LEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGI  172 (347)
T ss_pred             cCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHH
Confidence            99999999999999999999975557899999999999999999999999999999987667899999999999999999


Q ss_pred             HHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHH
Q 024297          167 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSS  246 (269)
Q Consensus       167 ~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~  246 (269)
                      .+|++|++|||+|++|+|+..+.....     +.++.+.............+|++++++||+|++|+|+|++|+++||++
T Consensus       173 ~vA~~l~afG~~V~~~dr~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~  247 (347)
T PLN02928        173 ELAKRLRPFGVKLLATRRSWTSEPEDG-----LLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDE  247 (347)
T ss_pred             HHHHHHhhCCCEEEEECCCCChhhhhh-----hccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHH
Confidence            999999999999999999754311100     000000000111111245789999999999999999999999999999


Q ss_pred             HHhhhCCCCcEEEEccCCCCccC
Q 024297          247 LSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       247 ~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      .|+ +||+|++|||+|||++|||
T Consensus       248 ~l~-~Mk~ga~lINvaRG~lVde  269 (347)
T PLN02928        248 FLS-SMKKGALLVNIARGGLLDY  269 (347)
T ss_pred             HHh-cCCCCeEEEECCCccccCH
Confidence            999 9999999999999999996

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=3.6e-50  Score=364.81  Aligned_cols=199  Identities=22%  Similarity=0.275  Sum_probs=181.1

Q ss_pred             CCChhhhcCCceEEEEeCCCCCHHHHhcCCCceEEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHH
Q 024297           46 ISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML  125 (269)
Q Consensus        46 ~~~~~~~~~~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L  125 (269)
                      .+++.+.++++|+++++..+++++.++.+|+||||++.|+|+|++|+++++++||.|+|+||+   ++.+||||+++++|
T Consensus        33 ~~~~~~~~~~~d~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~---~~~~VAE~a~~l~L  109 (311)
T PRK08410         33 PEEVIERIKDANIIITNKVVIDKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGY---STESVAQHTFAMLL  109 (311)
T ss_pred             HHHHHHHhCCCCEEEECCCCCCHHHHhhCCCCeEEEEcccccccccHHHHHhCCCEEEcCCCC---CChHHHHHHHHHHH
Confidence            456778889999988776789999999999999999999999999999999999999999998   88999999999999


Q ss_pred             HHhhcHHHHHHHHHhCCCCCC--------ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccc
Q 024297          126 GLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSS  197 (269)
Q Consensus       126 ~~~R~~~~~~~~~~~~~w~~~--------~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~  197 (269)
                      ++.|++..+++.++++.|...        .+++|.||||||||+|+||+++|+++++|||+|++|||+....        
T Consensus       110 ~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~--------  181 (311)
T PRK08410        110 SLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK--------  181 (311)
T ss_pred             HHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc--------
Confidence            999999999999999999743        2468999999999999999999999999999999999864321        


Q ss_pred             hhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          198 ALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                               ...    ....+|++++++||+|++|+|+|++|+++||++.|+ +||+|++|||+|||++|||
T Consensus       182 ---------~~~----~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~-~Mk~~a~lIN~aRG~vVDe  239 (311)
T PRK08410        182 ---------NEE----YERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELK-LLKDGAILINVGRGGIVNE  239 (311)
T ss_pred             ---------ccC----ceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHH-hCCCCeEEEECCCccccCH
Confidence                     000    134689999999999999999999999999999999 9999999999999999997

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=4.4e-50  Score=365.58  Aligned_cols=231  Identities=17%  Similarity=0.200  Sum_probs=194.2

Q ss_pred             cceEEEeCCCCCCchhhHHHHHhcCCCeEEee----CCCCChhhhcCCceEEEEeCCCCCHHHHhcCCCceEEEEccccC
Q 024297           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV----VPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGL   87 (269)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~   87 (269)
                      +++|+++.+..+   .. .+.++...++.+..    .+.+++.+.++++|+++++..++++++++.+|+||||++.|+|+
T Consensus         2 ~~~vl~~~~~~~---~~-~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~l~~~p~Lk~I~~~g~G~   77 (323)
T PRK15409          2 KPSVILYKALPD---DL-LQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGSGEKVDAALLEKMPKLRAASTISVGY   77 (323)
T ss_pred             CceEEEeCCCCH---HH-HHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEcCCCCCHHHHhhCCCCeEEEECceec
Confidence            478999987532   22 23333332332221    12235667789999988766789999999999999999999999


Q ss_pred             CccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC-----ccccccCCEEEEEecC
Q 024297           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP-----TGETLLGKTVFILGFG  162 (269)
Q Consensus        88 d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~-----~~~~l~g~~vgIiG~G  162 (269)
                      |+||+++++++||+|+|+|++   ++.+||||+++++|++.|++..+++.++++.|...     .+.+|.|||+||||+|
T Consensus        78 d~id~~~~~~~gI~V~n~~~~---~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G  154 (323)
T PRK15409         78 DNFDVDALTARKILLMHTPTV---LTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMG  154 (323)
T ss_pred             ccccHHHHHHCCCEEEeCCCC---CchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEccc
Confidence            999999999999999999998   78999999999999999999999999999999642     4678999999999999


Q ss_pred             chHHHHHHHhc-cCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEEEecCCCcccc
Q 024297          163 NIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTV  240 (269)
Q Consensus       163 ~iG~~~a~~l~-~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~~lp~t~~t~  240 (269)
                      +||+++|++++ +|||+|++|+++..+..                   ....+ .+.++++++++||+|++|+|+|++|+
T Consensus       155 ~IG~~va~~l~~~fgm~V~~~~~~~~~~~-------------------~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~  215 (323)
T PRK15409        155 RIGMALAQRAHFGFNMPILYNARRHHKEA-------------------EERFNARYCDLDTLLQESDFVCIILPLTDETH  215 (323)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCCchhh-------------------HHhcCcEecCHHHHHHhCCEEEEeCCCChHHh
Confidence            99999999998 99999999998643310                   01111 34689999999999999999999999


Q ss_pred             CcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          241 KLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       241 ~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      ++||++.|+ +||+|++|||+|||++|||
T Consensus       216 ~li~~~~l~-~mk~ga~lIN~aRG~vVde  243 (323)
T PRK15409        216 HLFGAEQFA-KMKSSAIFINAGRGPVVDE  243 (323)
T ss_pred             hccCHHHHh-cCCCCeEEEECCCccccCH
Confidence            999999999 9999999999999999996

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.8e-49  Score=359.86  Aligned_cols=229  Identities=21%  Similarity=0.261  Sum_probs=193.5

Q ss_pred             eEEEeCCC-CCCchhhHHHHHhcCCCeEEeeC-CCCChhhhcCCceEEEEeCCCCCHHHHhcCCCceEEEEccccCCccc
Q 024297           14 RVLFCGPH-FPASHNYTKEYLQNYPSIQVDVV-PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVD   91 (269)
Q Consensus        14 ~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id   91 (269)
                      ||+++... .+......+.+.+.++.+.+... +.+++.+.++++|+++.+..+++++.++++|+||||++.++|+|++|
T Consensus         2 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id   81 (317)
T PRK06487          2 RAVFLDHDSLDLGDLDLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISNKVALDAAALAAAPQLKLILVAATGTNNVD   81 (317)
T ss_pred             eEEEEccccCCccccchhHHHhhCCeEEEecCCCHHHHHHHhCCCeEEEEeCCCCCHHHHhhCCCCeEEEEcCccccccC
Confidence            57777653 22111222333334555554332 34667888999998887767899999999999999999999999999


Q ss_pred             hhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC--------ccccccCCEEEEEecCc
Q 024297           92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFGN  163 (269)
Q Consensus        92 ~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--------~~~~l~g~~vgIiG~G~  163 (269)
                      ++++.++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|...        .+.+|.||||||||+|+
T Consensus        82 ~~~~~~~gI~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~  158 (317)
T PRK06487         82 LAAARERGITVCNCQGY---GTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGE  158 (317)
T ss_pred             HHHHHHCCCEEEeCCCC---CcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCH
Confidence            99999999999999998   78999999999999999999999999999999743        24689999999999999


Q ss_pred             hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcC
Q 024297          164 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLC  243 (269)
Q Consensus       164 iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li  243 (269)
                      ||+++|+++++|||+|++|+++...                   ..    ....+|++++++||+|++|+|+|++|+++|
T Consensus       159 IG~~vA~~l~~fgm~V~~~~~~~~~-------------------~~----~~~~~l~ell~~sDiv~l~lPlt~~T~~li  215 (317)
T PRK06487        159 LGGAVARLAEAFGMRVLIGQLPGRP-------------------AR----PDRLPLDELLPQVDALTLHCPLTEHTRHLI  215 (317)
T ss_pred             HHHHHHHHHhhCCCEEEEECCCCCc-------------------cc----ccccCHHHHHHhCCEEEECCCCChHHhcCc
Confidence            9999999999999999999986322                   00    123589999999999999999999999999


Q ss_pred             CHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          244 SSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       244 ~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      |++.|+ +||+|++|||+|||++|||
T Consensus       216 ~~~~~~-~mk~ga~lIN~aRG~vVde  240 (317)
T PRK06487        216 GARELA-LMKPGALLINTARGGLVDE  240 (317)
T ss_pred             CHHHHh-cCCCCeEEEECCCccccCH
Confidence            999999 9999999999999999996

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-49  Score=361.28  Aligned_cols=199  Identities=17%  Similarity=0.207  Sum_probs=180.5

Q ss_pred             CCCChhhhcCCceEEEEeCCCCCHHHHhcCCCceEEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHH
Q 024297           45 PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM  124 (269)
Q Consensus        45 ~~~~~~~~~~~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~  124 (269)
                      +.+++.+.++++|+++....+++++.++.+|+||||++.++|+|++|++++.++||.|+|+||+   ++.+||||+++++
T Consensus        34 ~~~~~~~~~~~~d~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~---~~~~vAE~~i~l~  110 (314)
T PRK06932         34 SAEQTIERAKDADIVITSKVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGY---SSTTVPEHVLGMI  110 (314)
T ss_pred             ChHHHHHHhCCCcEEEEeCCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCC---ChhHHHHHHHHHH
Confidence            4566788899999888766789999999999999999999999999999999999999999998   7899999999999


Q ss_pred             HHHhhcHHHHHHHHHhCCCCCC--------ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcccccccc
Q 024297          125 LGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQS  196 (269)
Q Consensus       125 L~~~R~~~~~~~~~~~~~w~~~--------~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~  196 (269)
                      |++.|++..+++.++++.|...        .++++.||||||||+|+||+++|+++++|||+|++|+++...        
T Consensus       111 l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--------  182 (314)
T PRK06932        111 FALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--------  182 (314)
T ss_pred             HHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--------
Confidence            9999999999999999999642        346899999999999999999999999999999999875321        


Q ss_pred             chhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          197 SALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                                 .. .  ..+.+|++++++||+|++|+|+|++|+++||++.|+ +||+|++|||+|||++|||
T Consensus       183 -----------~~-~--~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~-~mk~ga~lIN~aRG~~Vde  240 (314)
T PRK06932        183 -----------VC-R--EGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLA-LMKPTAFLINTGRGPLVDE  240 (314)
T ss_pred             -----------cc-c--cccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHH-hCCCCeEEEECCCccccCH
Confidence                       00 0  124689999999999999999999999999999999 9999999999999999996

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=3.7e-49  Score=358.40  Aligned_cols=199  Identities=26%  Similarity=0.368  Sum_probs=180.8

Q ss_pred             ChhhhcCCceEEEEe-CCCCCHHHHhcCCCceEEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHH
Q 024297           48 DVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLG  126 (269)
Q Consensus        48 ~~~~~~~~~dv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~  126 (269)
                      ++.+.++++|++++. ..+++.++++.+|+||+|+..|+||||+|+++++++||.|+|+|++   +.++||||+++++|+
T Consensus        37 ~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnvp~~---~t~sVAe~~~aLiLa  113 (324)
T COG1052          37 ELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGY---STEAVAEHAVALILA  113 (324)
T ss_pred             HHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCcccHHHHHHCCcEEEeCCCC---CchHHHHHHHHHHHH
Confidence            347778999988876 6899999999999999999999999999999999999999999999   669999999999999


Q ss_pred             HhhcHHHHHHHHHhCCCCC------CccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhh
Q 024297          127 LLRKQNEMRMAIEQKKLGV------PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALA  200 (269)
Q Consensus       127 ~~R~~~~~~~~~~~~~w~~------~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~  200 (269)
                      +.|++.+.++..+++.|..      ..+.+++|||+||||+|+||+++|+++++|||+|++|+|++.+..          
T Consensus       114 ~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~----------  183 (324)
T COG1052         114 LARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEA----------  183 (324)
T ss_pred             HhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChHH----------
Confidence            9999999999999999875      356799999999999999999999999999999999999875210          


Q ss_pred             hcccccccccccc-CCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          201 VKNGIIDDLVDEK-GCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       201 ~~~~~~~~~~~~~-~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                               .... ..+.++++++++||+|++|||+|++|+|+||++.|+ +||+|++|||+|||++|||
T Consensus       184 ---------~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~-~mk~ga~lVNtaRG~~VDe  243 (324)
T COG1052         184 ---------EKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELA-KMKPGAILVNTARGGLVDE  243 (324)
T ss_pred             ---------HhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHH-hCCCCeEEEECCCccccCH
Confidence                     0111 134559999999999999999999999999999999 9999999999999999996

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=6.9e-48  Score=361.28  Aligned_cols=237  Identities=21%  Similarity=0.222  Sum_probs=198.5

Q ss_pred             CCCCCCCcceEEEeCCCCCCchhhHHHHHhcC-C-CeEEe--eCCCCChhhhcCCceEEEEe-CCCCCHHHHhcCCCceE
Q 024297            5 ARSSDKNITRVLFCGPHFPASHNYTKEYLQNY-P-SIQVD--VVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKL   79 (269)
Q Consensus         5 ~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~-~-~~~~~--~~~~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~~~Lk~   79 (269)
                      +-+.++.||+|+++.+..+.    ..+.++.. . .+...  ..+++++.+.++++|+++++ ..++++++++.+|+|||
T Consensus         3 ~~~~~~~~~~ili~~~~~~~----~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~   78 (409)
T PRK11790          3 KVSLPKDKIKFLLLEGVHQS----AVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVA   78 (409)
T ss_pred             CCCCCCCCeEEEEECCCCHH----HHHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeE
Confidence            45778888999998764322    22333332 1 22221  12345667788999987654 45899999999999999


Q ss_pred             EEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC--ccccccCCEEE
Q 024297           80 IMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVF  157 (269)
Q Consensus        80 I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~g~~vg  157 (269)
                      |++.|+|+|++|+++++++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|...  .+.+|.|||||
T Consensus        79 I~~~~~G~d~id~~~~~~~gI~V~n~pg~---~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvG  155 (409)
T PRK11790         79 IGCFCIGTNQVDLDAAAKRGIPVFNAPFS---NTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLG  155 (409)
T ss_pred             EEECceecccccHHHHHhCCCEEEeCCCC---ChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEE
Confidence            99999999999999999999999999998   88999999999999999999999999999999753  46899999999


Q ss_pred             EEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCc
Q 024297          158 ILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNK  237 (269)
Q Consensus       158 IiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~  237 (269)
                      |||+|+||+.+|+++++|||+|++||++.....                 ..   .....++++++++||+|++|+|+|+
T Consensus       156 IiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~-----------------~~---~~~~~~l~ell~~sDiVslh~Plt~  215 (409)
T PRK11790        156 IVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPL-----------------GN---ARQVGSLEELLAQSDVVSLHVPETP  215 (409)
T ss_pred             EECCCHHHHHHHHHHHHCCCEEEEECCCccccc-----------------CC---ceecCCHHHHHhhCCEEEEcCCCCh
Confidence            999999999999999999999999998542210                 00   0123589999999999999999999


Q ss_pred             cccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          238 QTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       238 ~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      +|+++||++.|+ +||+|++|||+|||++|||
T Consensus       216 ~T~~li~~~~l~-~mk~ga~lIN~aRG~~vde  246 (409)
T PRK11790        216 STKNMIGAEELA-LMKPGAILINASRGTVVDI  246 (409)
T ss_pred             HHhhccCHHHHh-cCCCCeEEEECCCCcccCH
Confidence            999999999999 9999999999999999996

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=9.4e-47  Score=345.42  Aligned_cols=230  Identities=23%  Similarity=0.319  Sum_probs=192.0

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEee----CCCCChhhhcCCceEEEEeC-CCCCHHHHhcCCCceEEEEccccC
Q 024297           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV----VPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGL   87 (269)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~dv~i~~~-~~~~~~~l~~~~~Lk~I~~~~aG~   87 (269)
                      +||+++.+..+   ...+ .++...++.+..    .+.+++.+.++++|++++.. .++++++++.+|+||||++.++|+
T Consensus         3 ~kil~~~~~~~---~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~   78 (333)
T PRK13243          3 PKVFITREIPE---NGIE-MLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGY   78 (333)
T ss_pred             ceEEEECCCCH---HHHH-HHhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCccc
Confidence            77888876422   2223 333322332221    23345667789999888753 589999999999999999999999


Q ss_pred             CccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC---------ccccccCCEEEE
Q 024297           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---------TGETLLGKTVFI  158 (269)
Q Consensus        88 d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~---------~~~~l~g~~vgI  158 (269)
                      |++|+++++++||.|+|+||+   |+.+||||+++++|++.|++..+++.++++.|...         .+.+|.||||||
T Consensus        79 d~id~~~~~~~gI~v~n~~g~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgI  155 (333)
T PRK13243         79 DNIDVEEATRRGIYVTNTPGV---LTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGI  155 (333)
T ss_pred             cccCHHHHHHcCCEEEECCCC---ChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEE
Confidence            999999999999999999998   88999999999999999999999999999999631         357899999999


Q ss_pred             EecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccccccc-CCCCCHHHHHhhCCEEEEecCCCc
Q 024297          159 LGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCHEDIFEFASKADVVVCCLSLNK  237 (269)
Q Consensus       159 iG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDvvv~~lp~t~  237 (269)
                      ||+|+||+.+|++|++|||+|++|||+..+..                   .... ....++++++++||+|++|+|+|+
T Consensus       156 iG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-------------------~~~~~~~~~~l~ell~~aDiV~l~lP~t~  216 (333)
T PRK13243        156 IGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-------------------EKELGAEYRPLEELLRESDFVSLHVPLTK  216 (333)
T ss_pred             ECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-------------------HHHcCCEecCHHHHHhhCCEEEEeCCCCh
Confidence            99999999999999999999999998754310                   0011 134689999999999999999999


Q ss_pred             cccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          238 QTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       238 ~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      +|+++|+++.|+ .||+|++|||+|||++|||
T Consensus       217 ~T~~~i~~~~~~-~mk~ga~lIN~aRg~~vd~  247 (333)
T PRK13243        217 ETYHMINEERLK-LMKPTAILVNTARGKVVDT  247 (333)
T ss_pred             HHhhccCHHHHh-cCCCCeEEEECcCchhcCH
Confidence            999999999999 9999999999999999996

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=5.6e-45  Score=338.34  Aligned_cols=250  Identities=20%  Similarity=0.198  Sum_probs=192.3

Q ss_pred             CCCcceEEEeCCCCCCchhhHHHHHhcC-CCeEEee-----CCCCChhhhc-CCceEEEEe-CCCCCHHHHhcCCC--ce
Q 024297            9 DKNITRVLFCGPHFPASHNYTKEYLQNY-PSIQVDV-----VPISDVPDVI-ANYHLCVVK-TMRLDSNCISRANQ--MK   78 (269)
Q Consensus         9 ~~~~~~vl~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~-~~~dv~i~~-~~~~~~~~l~~~~~--Lk   78 (269)
                      +.-+++|+++.+..++.  . .+.++.. ..++...     .+.+++.+.+ .++|++++. ..++++++++.+++  ||
T Consensus        12 ~~~~~~v~~~~~~~~~~--~-~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk   88 (386)
T PLN02306         12 PNGKYRVVSTKPMPGTR--W-INLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGK   88 (386)
T ss_pred             CCCCceEEEeCCCCcHH--H-HHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCce
Confidence            34577888888754321  1 2333322 1232211     3445666776 469988765 35799999999985  69


Q ss_pred             EEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC-----CccccccC
Q 024297           79 LIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLG  153 (269)
Q Consensus        79 ~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~g  153 (269)
                      +|++.++|+|++|+++++++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|..     ..|.++.|
T Consensus        89 ~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~---~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~g  165 (386)
T PLN02306         89 AFSNMAVGYNNVDVEAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKG  165 (386)
T ss_pred             EEEECCcccccccHHHHHHCCCEEEECCCc---CHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCC
Confidence            999999999999999999999999999998   7899999999999999999999999999998742     24678999


Q ss_pred             CEEEEEecCchHHHHHHHhc-cCCCEEEEEcCCCCCccccccccchhhhcccccccccccc--CCCCCHHHHHhhCCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--GCHEDIFEFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~ell~~aDvvv  230 (269)
                      |||||||+|+||+++|+++. +|||+|++||++............+.....    ......  ....+|++++++||+|+
T Consensus       166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~L~ell~~sDiV~  241 (386)
T PLN02306        166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKA----NGEQPVTWKRASSMEEVLREADVIS  241 (386)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccc----cccccccccccCCHHHHHhhCCEEE
Confidence            99999999999999999985 999999999987643110000000000000    000000  01358999999999999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      +|+|+|++|+++||++.|+ +||+|++|||+|||++|||
T Consensus       242 lh~Plt~~T~~lin~~~l~-~MK~ga~lIN~aRG~lVDe  279 (386)
T PLN02306        242 LHPVLDKTTYHLINKERLA-LMKKEAVLVNASRGPVIDE  279 (386)
T ss_pred             EeCCCChhhhhhcCHHHHH-hCCCCeEEEECCCccccCH
Confidence            9999999999999999999 9999999999999999996

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-45  Score=341.43  Aligned_cols=201  Identities=26%  Similarity=0.351  Sum_probs=180.0

Q ss_pred             CChhhhcCCceEEEEeC---CCCCHHHHhcCCCceEEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHH
Q 024297           47 SDVPDVIANYHLCVVKT---MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL  123 (269)
Q Consensus        47 ~~~~~~~~~~dv~i~~~---~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~  123 (269)
                      +++.+.++++|++++..   .+++++.++++|+||||++.++|+|++|++++.++||.|+|++|+   |+.+||||++++
T Consensus        89 ~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~---na~sVAE~al~l  165 (386)
T PLN03139         89 CELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGS---NVVSVAEDELMR  165 (386)
T ss_pred             HHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEECCCc---CcHHHHHHHHHH
Confidence            35677899999988743   369999999999999999999999999999999999999999998   889999999999


Q ss_pred             HHHHhhcHHHHHHHHHhCCCCC----CccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchh
Q 024297          124 MLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL  199 (269)
Q Consensus       124 ~L~~~R~~~~~~~~~~~~~w~~----~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~  199 (269)
                      +|++.|++..+++.++++.|..    ..+.+|.||||||||+|+||+.+|++|++|||+|++||++..+..         
T Consensus       166 iL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~---------  236 (386)
T PLN03139        166 ILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPE---------  236 (386)
T ss_pred             HHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchh---------
Confidence            9999999999999999999974    246789999999999999999999999999999999998753311         


Q ss_pred             hhccccccccccccC--CCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          200 AVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       200 ~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                               .....+  ..+++++++++||+|++|+|+|++|+++||++.|+ +||+|++|||+|||++|||
T Consensus       237 ---------~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~-~mk~ga~lIN~aRG~iVDe  298 (386)
T PLN03139        237 ---------LEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIA-KMKKGVLIVNNARGAIMDT  298 (386)
T ss_pred             ---------hHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHh-hCCCCeEEEECCCCchhhH
Confidence                     111111  23589999999999999999999999999999999 9999999999999999996

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=6.5e-45  Score=337.32  Aligned_cols=201  Identities=29%  Similarity=0.409  Sum_probs=180.2

Q ss_pred             CChhhhcCCceEEEEe---CCCCCHHHHhcCCCceEEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHH
Q 024297           47 SDVPDVIANYHLCVVK---TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL  123 (269)
Q Consensus        47 ~~~~~~~~~~dv~i~~---~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~  123 (269)
                      +++.+.++++|++++.   ..+++++.++++|+||||++.++|+|++|++++.++||.|+|++++   |+.+||||++++
T Consensus        82 ~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n~~g~---~a~~VAE~al~l  158 (385)
T PRK07574         82 SDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGS---NSISVAEHVVMM  158 (385)
T ss_pred             HHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEEcCCCC---chHHHHHHHHHH
Confidence            5567889999998874   2479999999999999999999999999999999999999999998   889999999999


Q ss_pred             HHHHhhcHHHHHHHHHhCCCCCC----ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchh
Q 024297          124 MLGLLRKQNEMRMAIEQKKLGVP----TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL  199 (269)
Q Consensus       124 ~L~~~R~~~~~~~~~~~~~w~~~----~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~  199 (269)
                      +|++.|++..+++.++++.|...    .+.+|.|+||||||+|+||+.+|++|++|||+|++|||+..+..         
T Consensus       159 ~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~---------  229 (385)
T PRK07574        159 ILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEE---------  229 (385)
T ss_pred             HHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchh---------
Confidence            99999999999999999999742    46789999999999999999999999999999999998763311         


Q ss_pred             hhccccccccccccC--CCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          200 AVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       200 ~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                               .....+  ...++++++++||+|++|+|+|++|+++||++.|+ +||+|++|||+|||++|||
T Consensus       230 ---------~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~-~mk~ga~lIN~aRG~iVDe  291 (385)
T PRK07574        230 ---------VEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLS-RMKRGSYLVNTARGKIVDR  291 (385)
T ss_pred             ---------hHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHh-cCCCCcEEEECCCCchhhH
Confidence                     011111  24689999999999999999999999999999999 9999999999999999986

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=3.7e-45  Score=323.83  Aligned_cols=231  Identities=26%  Similarity=0.354  Sum_probs=200.7

Q ss_pred             cceEEEeCCCCCCchhhHHHHH-hcCCCeEEe-eCCCCChhhhcCCceEEEE-eCCCCCHHHHh-cCCCceEEEEccccC
Q 024297           12 ITRVLFCGPHFPASHNYTKEYL-QNYPSIQVD-VVPISDVPDVIANYHLCVV-KTMRLDSNCIS-RANQMKLIMQFGVGL   87 (269)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~dv~i~-~~~~~~~~~l~-~~~~Lk~I~~~~aG~   87 (269)
                      |.+||++++.....    .+.+ +.+..+++. ..+.+|+.+.++++|++++ ..+++++++++ ...+||+|.+.++|+
T Consensus         6 ~~~il~~e~~~~~~----~~~l~~~g~~v~~~~~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~   81 (406)
T KOG0068|consen    6 MRKILVAESLDQAC----IEILKDNGYQVEFKKNLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGV   81 (406)
T ss_pred             cceEEEecccchHH----HHHHHhcCceEEEeccCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCc
Confidence            33899998864332    2344 333345544 3456688999999998776 47999999999 467999999999999


Q ss_pred             CccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC--CccccccCCEEEEEecCchH
Q 024297           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIG  165 (269)
Q Consensus        88 d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~g~~vgIiG~G~iG  165 (269)
                      |++|+++++++||.|.|+|.+   |..++||+++++++++.|++.+....++.|+|..  ..|.++.|||+||+|+|+||
T Consensus        82 dNVDL~AAte~gi~Vvn~P~~---Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrIG  158 (406)
T KOG0068|consen   82 DNVDLKAATENGILVVNTPTA---NSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGRIG  158 (406)
T ss_pred             cccChhhHHhCCeEEEeCCCC---ChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecccch
Confidence            999999999999999999998   8899999999999999999999999999999985  47899999999999999999


Q ss_pred             HHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEEEecCCCccccCcCC
Q 024297          166 VELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTVKLCS  244 (269)
Q Consensus       166 ~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~~lp~t~~t~~li~  244 (269)
                      +++|++++++||+|++||+-...                   +.....+ ...+++|+++.||+|++|+|+||+|++++|
T Consensus       159 seVA~r~k~~gm~vI~~dpi~~~-------------------~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin  219 (406)
T KOG0068|consen  159 SEVAVRAKAMGMHVIGYDPITPM-------------------ALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLN  219 (406)
T ss_pred             HHHHHHHHhcCceEEeecCCCch-------------------HHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccC
Confidence            99999999999999999976543                   1223333 457999999999999999999999999999


Q ss_pred             HHHHhhhCCCCcEEEEccCCCCccC
Q 024297          245 SSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       245 ~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      .+.|+ +||+|..+||++||.+|||
T Consensus       220 ~~tfA-~mKkGVriIN~aRGGvVDe  243 (406)
T KOG0068|consen  220 DETFA-KMKKGVRIINVARGGVVDE  243 (406)
T ss_pred             HHHHH-HhhCCcEEEEecCCceech
Confidence            99999 9999999999999999997

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.7e-44  Score=346.97  Aligned_cols=230  Identities=30%  Similarity=0.439  Sum_probs=195.0

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEee---CCCCChhhhcCCceEEEEe-CCCCCHHHHhcCCCceEEEEccccCC
Q 024297           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLE   88 (269)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~d   88 (269)
                      |||+++.+..+.    ..+.++..+++++..   .+.+++.+.++++|+++++ ..++++++++.+|+||||++.|+|+|
T Consensus         1 m~ili~~~~~~~----~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   76 (526)
T PRK13581          1 MKVLVSDPISPA----GLEILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVD   76 (526)
T ss_pred             CeEEEeCCCCHH----HHHHHhccCCeEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccc
Confidence            478888764322    233444444555542   2346677888999998875 36899999999999999999999999


Q ss_pred             ccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC--CccccccCCEEEEEecCchHH
Q 024297           89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGV  166 (269)
Q Consensus        89 ~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~g~~vgIiG~G~iG~  166 (269)
                      ++|+++++++||.|+|+|++   |+.+||||+++++|++.|++..+++.++++.|..  ..+.+|.||||||||+|+||+
T Consensus        77 ~id~~~~~~~gI~V~n~p~~---~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~  153 (526)
T PRK13581         77 NVDVPAATRRGIIVVNAPTG---NTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGS  153 (526)
T ss_pred             cccHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHH
Confidence            99999999999999999998   7899999999999999999999999999999975  356889999999999999999


Q ss_pred             HHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEEEecCCCccccCcCCH
Q 024297          167 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTVKLCSS  245 (269)
Q Consensus       167 ~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~~lp~t~~t~~li~~  245 (269)
                      .+|++|++|||+|++||++..+. .                  ....+ ...++++++++||+|++|+|+|++|++++++
T Consensus       154 ~vA~~l~~fG~~V~~~d~~~~~~-~------------------~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~  214 (526)
T PRK13581        154 EVAKRAKAFGMKVIAYDPYISPE-R------------------AAQLGVELVSLDELLARADFITLHTPLTPETRGLIGA  214 (526)
T ss_pred             HHHHHHHhCCCEEEEECCCCChh-H------------------HHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCH
Confidence            99999999999999999864321 0                  00111 2348999999999999999999999999999


Q ss_pred             HHHhhhCCCCcEEEEccCCCCccC
Q 024297          246 SLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       246 ~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      +.|+ +||+|++|||+|||++|||
T Consensus       215 ~~l~-~mk~ga~lIN~aRG~~vde  237 (526)
T PRK13581        215 EELA-KMKPGVRIINCARGGIIDE  237 (526)
T ss_pred             HHHh-cCCCCeEEEECCCCceeCH
Confidence            9999 9999999999999999996

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=3.5e-44  Score=327.86  Aligned_cols=232  Identities=19%  Similarity=0.281  Sum_probs=200.2

Q ss_pred             cceEEEeCCCCCCchhhHHHHHhcCCCeEEeeCC---CCChhhhcCCceEEEEe-CCCCCHHHHhcCC--CceEEEEccc
Q 024297           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVVK-TMRLDSNCISRAN--QMKLIMQFGV   85 (269)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~~--~Lk~I~~~~a   85 (269)
                      ||||+++... +.++++..++++++ ++++....   .++..+.++++|++++. ..++++++++++|  +||+|++.++
T Consensus         1 ~~~i~~~~~~-~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~   78 (330)
T PRK12480          1 MTKIMFFGTR-DYEKEMALNWGKKN-NVEVTTSKELLSSATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTA   78 (330)
T ss_pred             CcEEEEEeCc-HHHHHHHHHHHHhc-CeEEEEcCCCCCHHHHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEeccc
Confidence            5899999885 55677888888777 56655422   23457788999988775 4589999999997  9999999999


Q ss_pred             cCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCC--C-CccccccCCEEEEEecC
Q 024297           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--V-PTGETLLGKTVFILGFG  162 (269)
Q Consensus        86 G~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~--~-~~~~~l~g~~vgIiG~G  162 (269)
                      |+|++|+++++++||.|+|+|++   ++.+||||+++++|++.|++..+++.++++.|.  . ..+++|.|++|||||+|
T Consensus        79 G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G  155 (330)
T PRK12480         79 GFDMYDLDLAKKHNIVISNVPSY---SPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTG  155 (330)
T ss_pred             ccchhhHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCC
Confidence            99999999999999999999998   789999999999999999999999999998653  2 34679999999999999


Q ss_pred             chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCc
Q 024297          163 NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKL  242 (269)
Q Consensus       163 ~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~l  242 (269)
                      .||+.+|++|++|||+|++||++.....                 .. .  ....++++++++||+|++|+|++++|+++
T Consensus       156 ~IG~~vA~~L~~~G~~V~~~d~~~~~~~-----------------~~-~--~~~~~l~ell~~aDiVil~lP~t~~t~~l  215 (330)
T PRK12480        156 RIGAATAKIYAGFGATITAYDAYPNKDL-----------------DF-L--TYKDSVKEAIKDADIISLHVPANKESYHL  215 (330)
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCChhHhh-----------------hh-h--hccCCHHHHHhcCCEEEEeCCCcHHHHHH
Confidence            9999999999999999999998764310                 00 0  12357999999999999999999999999


Q ss_pred             CCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          243 CSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       243 i~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      ++++.|+ +||+|++|||+|||.+|||
T Consensus       216 i~~~~l~-~mk~gavlIN~aRG~~vd~  241 (330)
T PRK12480        216 FDKAMFD-HVKKGAILVNAARGAVINT  241 (330)
T ss_pred             HhHHHHh-cCCCCcEEEEcCCccccCH
Confidence            9999999 9999999999999999996

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=4.4e-44  Score=345.39  Aligned_cols=202  Identities=26%  Similarity=0.407  Sum_probs=181.2

Q ss_pred             CCCChhhhcCCceEEEEeC-CCCCHHHHhcCCCceEEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHH
Q 024297           45 PISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL  123 (269)
Q Consensus        45 ~~~~~~~~~~~~dv~i~~~-~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~  123 (269)
                      +.+++.+.++++|+++++. .++++++++.+|+||||++.|+|+|++|+++++++||.|+|+|++   |+.+||||++++
T Consensus        30 ~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~---~~~~vAE~~~~l  106 (525)
T TIGR01327        30 SREELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTG---NTISAAEHALAM  106 (525)
T ss_pred             CHHHHHHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhcHHHHHHCCCEEEeCCCc---ChHHHHHHHHHH
Confidence            4566778899999888753 589999999999999999999999999999999999999999998   889999999999


Q ss_pred             HHHHhhcHHHHHHHHHhCCCCCC--ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhh
Q 024297          124 MLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV  201 (269)
Q Consensus       124 ~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~  201 (269)
                      +|++.|++..+++.++++.|...  .+.+|.||||||||+|+||+++|++|++|||+|++||++..+..           
T Consensus       107 ~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~-----------  175 (525)
T TIGR01327       107 LLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPER-----------  175 (525)
T ss_pred             HHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhH-----------
Confidence            99999999999999999999753  56899999999999999999999999999999999998643210           


Q ss_pred             ccccccccccccC-C-CCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          202 KNGIIDDLVDEKG-C-HEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       202 ~~~~~~~~~~~~~-~-~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                              ....+ . .+++++++++||+|++|+|+|++|+++||++.|+ +||+|++|||+|||++|||
T Consensus       176 --------~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~-~mk~ga~lIN~aRG~~vde  236 (525)
T TIGR01327       176 --------AEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELA-KMKKGVIIVNCARGGIIDE  236 (525)
T ss_pred             --------HHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHh-cCCCCeEEEEcCCCceeCH
Confidence                    01111 1 2579999999999999999999999999999999 9999999999999999996

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=2.2e-42  Score=313.56  Aligned_cols=227  Identities=17%  Similarity=0.235  Sum_probs=185.6

Q ss_pred             eEEEeCCCCCCchhhHHHHHhcCCCeEEeeCCCCChhhhcCCceEEEEeCCCCCHHHHhcCCCceEEEEccccCCccchh
Q 024297           14 RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDIN   93 (269)
Q Consensus        14 ~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~   93 (269)
                      .+++..+.... ..+.+.+.+.+|++++...+..+    .+++|+++++.  .+.+.++ .++||||++.++|+|++|..
T Consensus         2 ~~~~~~~~~~~-~~~~~~l~~~~p~~~~~~~~~~~----~~~a~~~~~~~--~~~~~l~-~~~Lk~I~~~~aG~d~i~~~   73 (312)
T PRK15469          2 DIIFYHPTFDT-QWWIEALRKALPQARVRAWKSGD----NDPADYALVWH--PPVEMLA-GRDLKAVFALGAGVDSILSK   73 (312)
T ss_pred             EEEEeCCccCH-HHHHHHHHHHCCCCeEEecCCCC----CccCeEEEEeC--CChHHhc-cCCceEEEEcccccchhhhh
Confidence            56666665322 33555566668888776544333    46889888753  4667776 58999999999999999732


Q ss_pred             h-----HhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHH
Q 024297           94 A-----ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVEL  168 (269)
Q Consensus        94 ~-----~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~  168 (269)
                      .     +.++||.|+|+++.  +++.+||||+++++|++.|++..+.+.++++.|......++.|+||||||+|+||+++
T Consensus        74 ~~~~~~~~~~~i~v~~~~~~--~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~v  151 (312)
T PRK15469         74 LQAHPEMLDPSVPLFRLEDT--GMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKV  151 (312)
T ss_pred             hccccccCCCCceEEEecCC--cccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHH
Confidence            2     44689999999764  2679999999999999999999999999999998766678999999999999999999


Q ss_pred             HHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHH
Q 024297          169 AKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLS  248 (269)
Q Consensus       169 a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l  248 (269)
                      |++|++|||+|++|+++..+.                  ..........++++++++||+|++|+|+|++|+++|+++.|
T Consensus       152 A~~l~afG~~V~~~~~~~~~~------------------~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l  213 (312)
T PRK15469        152 AQSLQTWGFPLRCWSRSRKSW------------------PGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLL  213 (312)
T ss_pred             HHHHHHCCCEEEEEeCCCCCC------------------CCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHH
Confidence            999999999999999865431                  01111123568999999999999999999999999999999


Q ss_pred             hhhCCCCcEEEEccCCCCccC
Q 024297          249 SKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       249 ~~~mk~ga~lIN~~RG~~vde  269 (269)
                      + +||+|++|||+|||++|||
T Consensus       214 ~-~mk~ga~lIN~aRG~vVde  233 (312)
T PRK15469        214 E-QLPDGAYLLNLARGVHVVE  233 (312)
T ss_pred             h-cCCCCcEEEECCCccccCH
Confidence            9 9999999999999999996

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=4.3e-42  Score=317.29  Aligned_cols=209  Identities=22%  Similarity=0.320  Sum_probs=176.1

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEeeCCCCChhhhcCCceEEEEe-CCCCCHHHHhcCCCceEEEEccccCCccc
Q 024297           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVD   91 (269)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~d~id   91 (269)
                      |||++.+.. +    +..++++.+.++.... ..+...+.++++|+++++ .+++++++++ +++||||+++++|+||+|
T Consensus         1 mkIl~d~~~-~----~~~~~~~~~~ev~~~~-~~~~~~~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD   73 (378)
T PRK15438          1 MKILVDENM-P----YARELFSRLGEVKAVP-GRPIPVAQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVD   73 (378)
T ss_pred             CEEEEeCCc-c----hHHHHHhhcCcEEEeC-CCCCCHHHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccC
Confidence            578888764 3    3456666654443332 233345668999998875 4689999986 699999999999999999


Q ss_pred             hhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHH
Q 024297           92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR  171 (269)
Q Consensus        92 ~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~  171 (269)
                      ++++.++||.|+|+||+   |+.+||||+++++|++.|+.                +.++.||||||||+|+||+.+|++
T Consensus        74 ~~~~~~~gI~v~napg~---na~aVAE~~~~~lL~l~r~~----------------g~~L~gktvGIIG~G~IG~~vA~~  134 (378)
T PRK15438         74 EAWLKQAGIGFSAAPGC---NAIAVVEYVFSSLLMLAERD----------------GFSLHDRTVGIVGVGNVGRRLQAR  134 (378)
T ss_pred             HHHHHHCCCEEEECCCc---CchHHHHHHHHHHHHHhccC----------------CCCcCCCEEEEECcCHHHHHHHHH
Confidence            99999999999999998   88999999999999999962                468999999999999999999999


Q ss_pred             hccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCcc----ccCcCCHHH
Q 024297          172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ----TVKLCSSSL  247 (269)
Q Consensus       172 l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~----t~~li~~~~  247 (269)
                      |++|||+|++||+.....                  .   ......+|++++++||+|++|+|+|++    |++++|++.
T Consensus       135 l~a~G~~V~~~dp~~~~~------------------~---~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~  193 (378)
T PRK15438        135 LEALGIKTLLCDPPRADR------------------G---DEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKL  193 (378)
T ss_pred             HHHCCCEEEEECCccccc------------------c---cccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHH
Confidence            999999999999743220                  0   001346899999999999999999996    999999999


Q ss_pred             HhhhCCCCcEEEEccCCCCccC
Q 024297          248 SSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       248 l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      |+ +||+|++|||+|||++|||
T Consensus       194 l~-~mk~gailIN~aRG~vVDe  214 (378)
T PRK15438        194 IR-SLKPGAILINACRGAVVDN  214 (378)
T ss_pred             Hh-cCCCCcEEEECCCchhcCH
Confidence            99 9999999999999999996

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-41  Score=306.91  Aligned_cols=215  Identities=19%  Similarity=0.217  Sum_probs=174.7

Q ss_pred             eEEEeCCCCCCchhhHHHHHhcCCCeEEeeCCCCChhhhcCCceEEEEeCCCCCHHHHhcCCCceEEEEccccCCccchh
Q 024297           14 RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDIN   93 (269)
Q Consensus        14 ~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~   93 (269)
                      ++++..+..+   .+.+.+.+.++.+++...+      ...++|++++...      +..+++||||++.++|+|++|++
T Consensus         2 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~------~~~~~~Lk~I~~~~aG~D~id~~   66 (303)
T PRK06436          2 NVYVNFPMSK---KLLEICRDILDLDDVHWYP------DYYDAEAILIKGR------YVPGKKTKMIQSLSAGVDHIDVS   66 (303)
T ss_pred             eEEEEccCCH---HHHHHHHhhcccceeEecc------ccCCCCEEEecCC------cCCCCCeEEEEECCcccCcccHH
Confidence            4555544322   2222223345555554422      2468888765332      23367999999999999999999


Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhc
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLR  173 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~  173 (269)
                      +++++++.++|. |.   ++.+||||+++++|++.|++..+++.++++.|....+.+|.||||||||+|+||+++|++++
T Consensus        67 ~~~~~~i~~~~~-g~---~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~  142 (303)
T PRK06436         67 GIPENVVLCSNA-GA---YSISVAEHAFALLLAWAKNICENNYNMKNGNFKQSPTKLLYNKSLGILGYGGIGRRVALLAK  142 (303)
T ss_pred             HHHhCCeEEEcC-CC---CcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHH
Confidence            999988887775 55   67999999999999999999999999999999877778999999999999999999999999


Q ss_pred             cCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCC
Q 024297          174 PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMF  253 (269)
Q Consensus       174 ~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk  253 (269)
                      +|||+|++|+|+..+.                   ....  ...++++++++||+|++|+|+|++|+++|+++.|+ +||
T Consensus       143 afG~~V~~~~r~~~~~-------------------~~~~--~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~-~mk  200 (303)
T PRK06436        143 AFGMNIYAYTRSYVND-------------------GISS--IYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLS-LFR  200 (303)
T ss_pred             HCCCEEEEECCCCccc-------------------Cccc--ccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHh-cCC
Confidence            9999999999875331                   1110  13589999999999999999999999999999999 999


Q ss_pred             CCcEEEEccCCCCccC
Q 024297          254 FATYVVFMFQGHGVSF  269 (269)
Q Consensus       254 ~ga~lIN~~RG~~vde  269 (269)
                      +|++|||+|||++|||
T Consensus       201 ~ga~lIN~sRG~~vd~  216 (303)
T PRK06436        201 KGLAIINVARADVVDK  216 (303)
T ss_pred             CCeEEEECCCccccCH
Confidence            9999999999999996

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=2.1e-41  Score=310.09  Aligned_cols=221  Identities=19%  Similarity=0.285  Sum_probs=187.0

Q ss_pred             chhhHHHHHhcCCCeEEee---CCCCChhhhcCCceEEEEe-CCCCCHHHHhcCCC--ceEEEEccccCCccchhhHhcC
Q 024297           25 SHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGVGLEGVDINAATRC   98 (269)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~~~--Lk~I~~~~aG~d~id~~~~~~~   98 (269)
                      ...+.+.+.+.+ ++++..   ...++..+.++++|+++++ ..++++++++.+|+  ||||++.|+|+|++|+++++++
T Consensus        13 ~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~d~id~~~~~~~   91 (332)
T PRK08605         13 DAPYIKAWAEKH-HVEVDLTKEALTDDNVEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKY   91 (332)
T ss_pred             HHHHHHHHHHhc-CeEEEEecCCCCHHHHHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccccchhhHHHHHHC
Confidence            345666666654 444332   2334556778899987764 46899999999996  9999999999999999999999


Q ss_pred             CcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC---CccccccCCEEEEEecCchHHHHHHHh-cc
Q 024297           99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGFGNIGVELAKRL-RP  174 (269)
Q Consensus        99 gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~---~~~~~l~g~~vgIiG~G~iG~~~a~~l-~~  174 (269)
                      ||.|+|+|++   ++.+||||+++++|++.|++..+++.++++.|.+   ..+++|.|++|||||+|.||+++|++| ++
T Consensus        92 gi~v~n~~~~---~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~  168 (332)
T PRK08605         92 NLIISNVPSY---SPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKG  168 (332)
T ss_pred             CCEEEeCCCC---ChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHHHHHHHHHhc
Confidence            9999999998   7899999999999999999999999999997742   246899999999999999999999999 79


Q ss_pred             CCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCC
Q 024297          175 FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFF  254 (269)
Q Consensus       175 ~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~  254 (269)
                      |||+|++||++.....                ....   ....++++++++||+|++|+|++++|+++++++.++ .||+
T Consensus       169 ~g~~V~~~d~~~~~~~----------------~~~~---~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~-~mk~  228 (332)
T PRK08605        169 YGSDVVAYDPFPNAKA----------------ATYV---DYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFK-HFKK  228 (332)
T ss_pred             CCCEEEEECCCccHhH----------------Hhhc---cccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHh-cCCC
Confidence            9999999998754310                0011   123589999999999999999999999999999999 9999


Q ss_pred             CcEEEEccCCCCccC
Q 024297          255 ATYVVFMFQGHGVSF  269 (269)
Q Consensus       255 ga~lIN~~RG~~vde  269 (269)
                      |++|||++||.++|+
T Consensus       229 gailIN~sRG~~vd~  243 (332)
T PRK08605        229 GAVFVNCARGSLVDT  243 (332)
T ss_pred             CcEEEECCCCcccCH
Confidence            999999999999985

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=2.6e-41  Score=312.88  Aligned_cols=209  Identities=17%  Similarity=0.271  Sum_probs=176.7

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEeeCCCCChhhhcCCceEEEEeC-CCCCHHHHhcCCCceEEEEccccCCccc
Q 024297           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVD   91 (269)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~i~~~-~~~~~~~l~~~~~Lk~I~~~~aG~d~id   91 (269)
                      |||++.+.. |    +.+++++.+..+.... ..+...+.++++|+++++. +++++++++ .++||||++.++|+||+|
T Consensus         1 mkI~~d~~~-p----~~~~~~~~~~~v~~~~-~~~~~~~~l~daD~liv~~~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD   73 (381)
T PRK00257          1 MKIVADENI-P----LLDAFFAGFGEIRRLP-GRAFDRAAVRDADVLLVRSVTRVDRALLE-GSRVRFVGTCTIGTDHLD   73 (381)
T ss_pred             CEEEEecCc-h----hHHHHHhhCCcEEEcC-CcccCHHHhCCceEEEEeCCCCCCHHHhc-CCCCeEEEECCccccccC
Confidence            688888886 2    4466666665443322 2333356789999987654 689999997 589999999999999999


Q ss_pred             hhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHH
Q 024297           92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR  171 (269)
Q Consensus        92 ~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~  171 (269)
                      ++++.++||.|+|+||+   |+.+||||+++++|++.|+                .+.++.||||||||+|+||+.+|++
T Consensus        74 ~~~~~~~gI~v~napg~---na~aVAE~v~~~lL~l~r~----------------~g~~l~gktvGIIG~G~IG~~va~~  134 (381)
T PRK00257         74 LDYFAEAGITWSSAPGC---NARGVVDYVLGSLLTLAER----------------EGVDLAERTYGVVGAGHVGGRLVRV  134 (381)
T ss_pred             HHHHHHCCCEEEECCCc---ChHHHHHHHHHHHHHHhcc----------------cCCCcCcCEEEEECCCHHHHHHHHH
Confidence            99999999999999998   8899999999999999986                2578999999999999999999999


Q ss_pred             hccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCc----cccCcCCHHH
Q 024297          172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNK----QTVKLCSSSL  247 (269)
Q Consensus       172 l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~----~t~~li~~~~  247 (269)
                      +++|||+|++||+.....                  ..   .....++++++++||+|++|+|+|+    +|+++||++.
T Consensus       135 l~a~G~~V~~~Dp~~~~~------------------~~---~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~  193 (381)
T PRK00257        135 LRGLGWKVLVCDPPRQEA------------------EG---DGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAF  193 (381)
T ss_pred             HHHCCCEEEEECCccccc------------------cc---CccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHH
Confidence            999999999999754221                  00   0134689999999999999999999    5999999999


Q ss_pred             HhhhCCCCcEEEEccCCCCccC
Q 024297          248 SSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       248 l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      |+ +||+|++|||+|||++|||
T Consensus       194 l~-~mk~gailIN~aRG~vVde  214 (381)
T PRK00257        194 LA-SLRPGAWLINASRGAVVDN  214 (381)
T ss_pred             Hh-cCCCCeEEEECCCCcccCH
Confidence            99 9999999999999999996

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=100.00  E-value=1.7e-41  Score=305.79  Aligned_cols=199  Identities=32%  Similarity=0.416  Sum_probs=173.2

Q ss_pred             hhhhcCCceEEEEe--CCCCCHHHHhcC-CCceEEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHH
Q 024297           49 VPDVIANYHLCVVK--TMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML  125 (269)
Q Consensus        49 ~~~~~~~~dv~i~~--~~~~~~~~l~~~-~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L  125 (269)
                      ..+.+.+..+.+..  ....+.+.+... |+||+|.++|+|+||+|+++|+++||+|+|+|+.   +..+|||++++++|
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~---~~~~vAd~~~~lil  130 (336)
T KOG0069|consen   54 FLKRIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDV---LTDDVADLAVSLLL  130 (336)
T ss_pred             hhhhccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCc---chHHHHHHHHHHHH
Confidence            44455555554432  356677777764 8999999999999999999999999999999998   66999999999999


Q ss_pred             HHhhcHHHHHHHHHhCCCCC----CccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhh
Q 024297          126 GLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV  201 (269)
Q Consensus       126 ~~~R~~~~~~~~~~~~~w~~----~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~  201 (269)
                      .++|++...++.++++.|..    +.+..+.||||||+|+|+||+++|++|++||+.+.|++|+..+.            
T Consensus       131 ~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~------------  198 (336)
T KOG0069|consen  131 ALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPP------------  198 (336)
T ss_pred             HHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCch------------
Confidence            99999999999999999942    45789999999999999999999999999999999999977652            


Q ss_pred             ccccccccccccC-CCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          202 KNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       202 ~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                            +...+.+ ...++++++.++|+||+|||+|++|+|++|++.|+ +||+|++|||+|||.++||
T Consensus       199 ------~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~-~mk~g~vlVN~aRG~iide  260 (336)
T KOG0069|consen  199 ------EEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIE-KMKDGAVLVNTARGAIIDE  260 (336)
T ss_pred             ------hhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHH-hcCCCeEEEeccccccccH
Confidence                  1222222 45799999999999999999999999999999999 9999999999999999996

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=3.2e-33  Score=234.84  Aligned_cols=130  Identities=33%  Similarity=0.402  Sum_probs=112.3

Q ss_pred             HHHHHHHhhcHHHHHHHHHhCCC---CCCccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccc
Q 024297          121 IYLMLGLLRKQNEMRMAIEQKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSS  197 (269)
Q Consensus       121 l~~~L~~~R~~~~~~~~~~~~~w---~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~  197 (269)
                      ++++|++.|++..+++.++++.|   ....++++.|+||||||+|+||+++|++|++|||+|++|+|+..+..       
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~-------   73 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE-------   73 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH-------
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh-------
Confidence            57999999999999999999999   56678999999999999999999999999999999999999875421       


Q ss_pred             hhhhccccccccccccC-CCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          198 ALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       198 ~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                                 .....+ ...++++++++||+|++|+|+|++|+++||++.|+ +||+|++|||+|||++|||
T Consensus        74 -----------~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~-~mk~ga~lvN~aRG~~vde  134 (178)
T PF02826_consen   74 -----------GADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLA-KMKPGAVLVNVARGELVDE  134 (178)
T ss_dssp             -----------HHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHH-TSTTTEEEEESSSGGGB-H
T ss_pred             -----------hcccccceeeehhhhcchhhhhhhhhccccccceeeeeeeee-ccccceEEEeccchhhhhh
Confidence                       011111 45799999999999999999999999999999999 9999999999999999996

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=99.87  E-value=1.2e-22  Score=182.67  Aligned_cols=184  Identities=23%  Similarity=0.328  Sum_probs=163.7

Q ss_pred             CCCCCHHHHhcCCCceEEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCC
Q 024297           63 TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK  142 (269)
Q Consensus        63 ~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~  142 (269)
                      +-.++++.+++++.||++...+.|+|++|+.++.+-||.|||.|+.   .-+.+|+-++.++|.++|+.....+..+.+.
T Consensus        82 ~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~---~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~  158 (435)
T KOG0067|consen   82 TITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSD---AVEETADSTLCHILNLYRRNTWLCQALREGT  158 (435)
T ss_pred             ecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccch---hHHHHHHHHHHHHHhhhcccchhhhhhcccc
Confidence            4688999999999999999999999999999999999999999997   4588999999999999999999999999998


Q ss_pred             CCCC---------ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccccccc
Q 024297          143 LGVP---------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK  213 (269)
Q Consensus       143 w~~~---------~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (269)
                      |...         ....+.|.+.|++|+|.+|++++.++++||..|+.||+....-                   .-..+
T Consensus       159 ~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g-------------------~~~~l  219 (435)
T KOG0067|consen  159 CTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDG-------------------IDKSL  219 (435)
T ss_pred             eeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhh-------------------hhhhc
Confidence            8532         2356899999999999999999999999999999999765431                   11111


Q ss_pred             C--CCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          214 G--CHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       214 ~--~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      +  ...++.+++.++|.+++||.+++.++++++.-.++ .|+.|++++|++||.++||
T Consensus       220 g~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tik-qm~qGaflvnta~gglvde  276 (435)
T KOG0067|consen  220 GLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIK-QMRQGAFLVNTARGGLVDE  276 (435)
T ss_pred             ccceecccchhhhhccceeeecccCcccccccccccce-eecccceEeeecccccCCh
Confidence            2  34569999999999999999999999999998888 9999999999999999996

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.84  E-value=3.2e-20  Score=166.85  Aligned_cols=168  Identities=17%  Similarity=0.250  Sum_probs=131.8

Q ss_pred             hcCCceEEEEeC-----------------CCCCHHHHhcCCCceEEEEccccCCccchh-hHhcCCcEEE------ecCC
Q 024297           52 VIANYHLCVVKT-----------------MRLDSNCISRANQMKLIMQFGVGLEGVDIN-AATRCGIKVA------RIPG  107 (269)
Q Consensus        52 ~~~~~dv~i~~~-----------------~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~-~~~~~gI~v~------n~~~  107 (269)
                      .+.++|+++...                 ..+++++++.+|   .++...+|+++.+++ +++++||+|+      |++.
T Consensus        51 ~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~  127 (287)
T TIGR02853        51 DLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAI  127 (287)
T ss_pred             hhccCCEEEECCccccCCceEecccccCCccccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEE
Confidence            378889877631                 125688888777   477788899999988 8999999999      8877


Q ss_pred             CCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          108 DVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       108 ~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      +   |+.++||.++.+++..                   .+.++.|++++|+|+|.||+.+|+.|+++|++|++++|+..
T Consensus       128 ~---n~~~~Ae~ai~~al~~-------------------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~  185 (287)
T TIGR02853       128 Y---NSIPTAEGAIMMAIEH-------------------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA  185 (287)
T ss_pred             E---ccHhHHHHHHHHHHHh-------------------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            7   7899999999877743                   13479999999999999999999999999999999999764


Q ss_pred             CccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          188 SHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +.....              ..........++.++++++|+|++|+|.+     +++++.++ .||+++++||++-.
T Consensus       186 ~~~~~~--------------~~g~~~~~~~~l~~~l~~aDiVint~P~~-----ii~~~~l~-~~k~~aliIDlas~  242 (287)
T TIGR02853       186 DLARIT--------------EMGLIPFPLNKLEEKVAEIDIVINTIPAL-----VLTADVLS-KLPKHAVIIDLASK  242 (287)
T ss_pred             HHHHHH--------------HCCCeeecHHHHHHHhccCCEEEECCChH-----HhCHHHHh-cCCCCeEEEEeCcC
Confidence            311000              00001112356888999999999999863     77888999 99999999999864

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.78  E-value=1.9e-18  Score=163.07  Aligned_cols=146  Identities=16%  Similarity=0.102  Sum_probs=113.2

Q ss_pred             ccccCCccc-hhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec
Q 024297           83 FGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF  161 (269)
Q Consensus        83 ~~aG~d~id-~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~  161 (269)
                      .++|+..+- ......-+|+|+|+|++   +..++||+++++++++...+.      +.+      +..+.|++|+|+|+
T Consensus       198 TttGv~rl~~m~~~g~L~iPV~nv~d~---~tk~~aD~~~G~~~s~~d~~~------R~~------~~~LaGKtVgVIG~  262 (476)
T PTZ00075        198 TTTGVHRLYKMLKKGELLFPAINVNDS---VTKSKFDNIYGCRHSLIDGIF------RAT------DVMIAGKTVVVCGY  262 (476)
T ss_pred             chHHHHHHHHHHHCCCCCceEEEeCCc---chHHHHHHHHHHHHHHHHHHH------Hhc------CCCcCCCEEEEECC
Confidence            355655532 11122357999999998   669999999999999884432      222      36899999999999


Q ss_pred             CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccC
Q 024297          162 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVK  241 (269)
Q Consensus       162 G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~  241 (269)
                      |.||+.+|++|++|||+|+++++.+.+....                 ...-....+++++++++|+|++|.    .|++
T Consensus       263 G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A-----------------~~~G~~~~~leell~~ADIVI~at----Gt~~  321 (476)
T PTZ00075        263 GDVGKGCAQALRGFGARVVVTEIDPICALQA-----------------AMEGYQVVTLEDVVETADIFVTAT----GNKD  321 (476)
T ss_pred             CHHHHHHHHHHHHCCCEEEEEeCCchhHHHH-----------------HhcCceeccHHHHHhcCCEEEECC----Cccc
Confidence            9999999999999999999998765442110                 001012357899999999999984    4789


Q ss_pred             cCCHHHHhhhCCCCcEEEEccCCC
Q 024297          242 LCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       242 li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +|+++.|+ .||+|++|||+|||.
T Consensus       322 iI~~e~~~-~MKpGAiLINvGr~d  344 (476)
T PTZ00075        322 IITLEHMR-RMKNNAIVGNIGHFD  344 (476)
T ss_pred             ccCHHHHh-ccCCCcEEEEcCCCc
Confidence            99999999 999999999999995

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.67  E-value=1.7e-15  Score=136.97  Aligned_cols=173  Identities=17%  Similarity=0.228  Sum_probs=127.5

Q ss_pred             hhhcCCceEEEEeCC-----------------CCCHHHHhcCCCceEEEEccccCCccchhhHhcCCcEEEecCCCCC--
Q 024297           50 PDVIANYHLCVVKTM-----------------RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT--  110 (269)
Q Consensus        50 ~~~~~~~dv~i~~~~-----------------~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~--  110 (269)
                      .+.+.++|+++....                 .++.+.++.+|++..+. .|.+.++++ +.+.++||.+.+......  
T Consensus        50 ~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~  127 (296)
T PRK08306         50 EEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVA  127 (296)
T ss_pred             HHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhh
Confidence            345789998875311                 13678899999987554 588888887 788999999998774210  


Q ss_pred             -CCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCc
Q 024297          111 -GNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (269)
Q Consensus       111 -~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~  189 (269)
                       -|+.++||.++...+..                   .+.++.+++++|+|+|.+|+.+++.|+.+|++|++++|+....
T Consensus       128 ~~ns~~~aegav~~a~~~-------------------~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~  188 (296)
T PRK08306        128 ILNSIPTAEGAIMMAIEH-------------------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHL  188 (296)
T ss_pred             hhccHhHHHHHHHHHHHh-------------------CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence             15678888876653321                   1356889999999999999999999999999999999975431


Q ss_pred             cccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          190 SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ....              ..........++.+.++++|+|++++|.     .+++++.++ .|++++++||++-
T Consensus       189 ~~~~--------------~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~-~~~~g~vIIDla~  242 (296)
T PRK08306        189 ARIT--------------EMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLS-KMPPEALIIDLAS  242 (296)
T ss_pred             HHHH--------------HcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHH-cCCCCcEEEEEcc
Confidence            1100              0000011234678889999999999873     578899999 9999999999983

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.64  E-value=1.9e-16  Score=126.59  Aligned_cols=98  Identities=24%  Similarity=0.406  Sum_probs=76.4

Q ss_pred             EEEeCCCCCCchhhHHHHHhc-CCCeEEee-CCCCChhhhcCCceEEEEeCCC-CCHHHHhcCCCceEEEEccccCCccc
Q 024297           15 VLFCGPHFPASHNYTKEYLQN-YPSIQVDV-VPISDVPDVIANYHLCVVKTMR-LDSNCISRANQMKLIMQFGVGLEGVD   91 (269)
Q Consensus        15 vl~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~dv~i~~~~~-~~~~~l~~~~~Lk~I~~~~aG~d~id   91 (269)
                      ||++.+..++    ..+.+++ + ++++.. .+.+++.+.++++|+++++... ++++.++.+|+||||+..|+|+|++|
T Consensus         1 ili~~~~~~~----~~~~l~~~~-~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id   75 (133)
T PF00389_consen    1 ILITDPLPDE----EIERLEEGF-EVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNID   75 (133)
T ss_dssp             EEESSS-SHH----HHHHHHHTS-EEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-
T ss_pred             eEEeccCCHH----HHHHHHCCc-eEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCccc
Confidence            5777765333    3344444 4 555443 3456678889999999987655 99999999999999999999999999


Q ss_pred             hhhHhcCCcEEEecCCCCCCCcchHHHHH
Q 024297           92 INAATRCGIKVARIPGDVTGNAASCAELT  120 (269)
Q Consensus        92 ~~~~~~~gI~v~n~~~~~~~~~~~vAE~~  120 (269)
                      +++++++||.|+|+||+   ++.+||||+
T Consensus        76 ~~~a~~~gI~V~n~~g~---~~~aVAE~a  101 (133)
T PF00389_consen   76 LEAAKERGIPVTNVPGY---NAEAVAEHA  101 (133)
T ss_dssp             HHHHHHTTSEEEE-TTT---THHHHHHHH
T ss_pred             HHHHhhCeEEEEEeCCc---CCcchhccc
Confidence            99999999999999998   789999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.54  E-value=7.7e-15  Score=132.43  Aligned_cols=93  Identities=26%  Similarity=0.353  Sum_probs=76.3

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD  227 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD  227 (269)
                      ..|+||||||||+|+||+++|++|+++|++|+++++......                  .....+ ...++++++++||
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~------------------~A~~~G~~v~sl~Eaak~AD   73 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFE------------------VAKADGFEVMSVSEAVRTAQ   73 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhH------------------HHHHcCCEECCHHHHHhcCC
Confidence            579999999999999999999999999999999986532210                  111111 2358999999999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      +|++|+|+ ++|+++++++.+. .||+|++|+..
T Consensus        74 VV~llLPd-~~t~~V~~~eil~-~MK~GaiL~f~  105 (335)
T PRK13403         74 VVQMLLPD-EQQAHVYKAEVEE-NLREGQMLLFS  105 (335)
T ss_pred             EEEEeCCC-hHHHHHHHHHHHh-cCCCCCEEEEC
Confidence            99999996 6789999999999 99999988753

>PLN02494 adenosylhomocysteinase

Probab=99.49  E-value=8.6e-14  Score=131.42  Aligned_cols=99  Identities=17%  Similarity=0.187  Sum_probs=79.6

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      ..+.|++|+|+|+|.||+.+|+++++||++|+++++++.+.....             ...+    ...+++++++.+|+
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~-------------~~G~----~vv~leEal~~ADV  312 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQAL-------------MEGY----QVLTLEDVVSEADI  312 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHH-------------hcCC----eeccHHHHHhhCCE
Confidence            447999999999999999999999999999999998764421110             0011    22468899999999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC-CCCccC
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ-GHGVSF  269 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R-G~~vde  269 (269)
                      |+.+    ..|+++++++.|+ .||+|++|+|+|| +..||+
T Consensus       313 VI~t----TGt~~vI~~e~L~-~MK~GAiLiNvGr~~~eID~  349 (477)
T PLN02494        313 FVTT----TGNKDIIMVDHMR-KMKNNAIVCNIGHFDNEIDM  349 (477)
T ss_pred             EEEC----CCCccchHHHHHh-cCCCCCEEEEcCCCCCccCH
Confidence            9973    3578999999999 9999999999999 577774

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.36  E-value=1.5e-12  Score=121.92  Aligned_cols=98  Identities=19%  Similarity=0.160  Sum_probs=78.9

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      ..+.|++|+|+|+|.||+.+|++++++|++|+++++.+.+.....             ...+    ...+++++++.+|+
T Consensus       191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-------------~~G~----~v~~leeal~~aDV  253 (406)
T TIGR00936       191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-------------MDGF----RVMTMEEAAKIGDI  253 (406)
T ss_pred             CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-------------hcCC----EeCCHHHHHhcCCE
Confidence            458999999999999999999999999999999987664421100             0011    23467889999999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC-cc
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG-VS  268 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~-vd  268 (269)
                      |+.+.    .+.++++.+.|. .||+|++|+|+||+.+ ||
T Consensus       254 VItaT----G~~~vI~~~~~~-~mK~GailiN~G~~~~eId  289 (406)
T TIGR00936       254 FITAT----GNKDVIRGEHFE-NMKDGAIVANIGHFDVEID  289 (406)
T ss_pred             EEECC----CCHHHHHHHHHh-cCCCCcEEEEECCCCceeC
Confidence            98864    367899999999 9999999999999987 66

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.36  E-value=3.3e-12  Score=120.19  Aligned_cols=147  Identities=18%  Similarity=0.143  Sum_probs=99.0

Q ss_pred             ccccCCccc-hhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec
Q 024297           83 FGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF  161 (269)
Q Consensus        83 ~~aG~d~id-~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~  161 (269)
                      .++|+..+- .....+.+++|.|++++.+   .+.-|...+.--+....+.+            .....+.|++|+|+|+
T Consensus       156 TttGv~rl~~~~~~~~l~~Pv~~vn~s~~---K~~~dn~~gt~~s~~~ai~r------------at~~~l~Gk~VlViG~  220 (425)
T PRK05476        156 TTTGVHRLYAMAKDGALKFPAINVNDSVT---KSKFDNRYGTGESLLDGIKR------------ATNVLIAGKVVVVAGY  220 (425)
T ss_pred             chHHHHHHHHHHHcCCCCCCEEecCCccc---CccccccHHHHhhhHHHHHH------------hccCCCCCCEEEEECC
Confidence            455665542 1112346799999998743   44322222111111111100            0124589999999999


Q ss_pred             CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccC
Q 024297          162 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVK  241 (269)
Q Consensus       162 G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~  241 (269)
                      |.||+.+|++|+++|++|+++++++.+.....                 .......+++++++.+|+|+.+.    .+.+
T Consensus       221 G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~-----------------~~G~~v~~l~eal~~aDVVI~aT----G~~~  279 (425)
T PRK05476        221 GDVGKGCAQRLRGLGARVIVTEVDPICALQAA-----------------MDGFRVMTMEEAAELGDIFVTAT----GNKD  279 (425)
T ss_pred             CHHHHHHHHHHHhCCCEEEEEcCCchhhHHHH-----------------hcCCEecCHHHHHhCCCEEEECC----CCHH
Confidence            99999999999999999999998765421110                 00012346889999999998875    3567


Q ss_pred             cCCHHHHhhhCCCCcEEEEccCCCC
Q 024297          242 LCSSSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       242 li~~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      +++.+.|. .||+|++++|+||...
T Consensus       280 vI~~~~~~-~mK~GailiNvG~~d~  303 (425)
T PRK05476        280 VITAEHME-AMKDGAILANIGHFDN  303 (425)
T ss_pred             HHHHHHHh-cCCCCCEEEEcCCCCC
Confidence            99999999 9999999999999764

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.23  E-value=1.3e-11  Score=101.20  Aligned_cols=95  Identities=20%  Similarity=0.198  Sum_probs=66.5

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      ...+.||++.|+|||.+|+.+|+.|+++|++|++++..+.+..++.             .+.+    ....++++++++|
T Consensus        18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-------------~dGf----~v~~~~~a~~~ad   80 (162)
T PF00670_consen   18 NLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA-------------MDGF----EVMTLEEALRDAD   80 (162)
T ss_dssp             -S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-------------HTT-----EEE-HHHHTTT-S
T ss_pred             ceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-------------hcCc----EecCHHHHHhhCC
Confidence            3669999999999999999999999999999999998654422111             0111    3357999999999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +++.+.-    .+.+++.+.|+ +||+|+++.|++.-
T Consensus        81 i~vtaTG----~~~vi~~e~~~-~mkdgail~n~Gh~  112 (162)
T PF00670_consen   81 IFVTATG----NKDVITGEHFR-QMKDGAILANAGHF  112 (162)
T ss_dssp             EEEE-SS----SSSSB-HHHHH-HS-TTEEEEESSSS
T ss_pred             EEEECCC----CccccCHHHHH-HhcCCeEEeccCcC
Confidence            9998853    46889999999 99999999999864

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.18  E-value=9.1e-12  Score=103.01  Aligned_cols=91  Identities=20%  Similarity=0.291  Sum_probs=67.6

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccc-cCCCCCHHHHHhhCCEEEEe
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~~aDvvv~~  232 (269)
                      ++|||||+|+||+.+|++|...|++|++|||++.+...                 .... ....++..++++++|+|+++
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~-----------------~~~~g~~~~~s~~e~~~~~dvvi~~   64 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEA-----------------LAEAGAEVADSPAEAAEQADVVILC   64 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHH-----------------HHHTTEEEESSHHHHHHHBSEEEE-
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhh-----------------hHHhhhhhhhhhhhHhhcccceEee
Confidence            58999999999999999999999999999988654211                 1111 11347899999999999999


Q ss_pred             cCCCccccCcCC-HHHHhhhCCCCcEEEEcc
Q 024297          233 LSLNKQTVKLCS-SSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       233 lp~t~~t~~li~-~~~l~~~mk~ga~lIN~~  262 (269)
                      +|..++++.++. .+.+. .+++|.++||++
T Consensus        65 v~~~~~v~~v~~~~~i~~-~l~~g~iiid~s   94 (163)
T PF03446_consen   65 VPDDDAVEAVLFGENILA-GLRPGKIIIDMS   94 (163)
T ss_dssp             SSSHHHHHHHHHCTTHGG-GS-TTEEEEE-S
T ss_pred             cccchhhhhhhhhhHHhh-ccccceEEEecC
Confidence            998777777553 33566 899999999986

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.18  E-value=2.3e-11  Score=111.06  Aligned_cols=92  Identities=23%  Similarity=0.280  Sum_probs=72.5

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD  227 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD  227 (269)
                      ..+.+++|||||+|+||+++|+.|+.+|++|+++++...+...                 .....+ ...+..+++++||
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~-----------------~A~~~G~~~~s~~eaa~~AD   75 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWK-----------------KAEADGFEVLTVAEAAKWAD   75 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHH-----------------HHHHCCCeeCCHHHHHhcCC
Confidence            5689999999999999999999999999999988775443211                 111111 2348899999999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEE
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVV  259 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lI  259 (269)
                      +|++++|.+.. ..+++++.+. .|++|++|+
T Consensus        76 VVvLaVPd~~~-~~V~~~~I~~-~Lk~g~iL~  105 (330)
T PRK05479         76 VIMILLPDEVQ-AEVYEEEIEP-NLKEGAALA  105 (330)
T ss_pred             EEEEcCCHHHH-HHHHHHHHHh-cCCCCCEEE
Confidence            99999997654 7777677888 899999885

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.11  E-value=1.4e-10  Score=108.94  Aligned_cols=96  Identities=19%  Similarity=0.192  Sum_probs=76.5

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~a  226 (269)
                      +..+.|++|+|+|+|.||+.+++.++++|++|+++++++.+...                  ....+ ....+++.+..+
T Consensus       197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~------------------A~~~G~~~~~~~e~v~~a  258 (413)
T cd00401         197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQ------------------AAMEGYEVMTMEEAVKEG  258 (413)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHH------------------HHhcCCEEccHHHHHcCC
Confidence            35579999999999999999999999999999999987654211                  11112 223567888999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      |+|+.+..    +.+.++.+.+. .||+|++++|+|++++
T Consensus       259 DVVI~atG----~~~~i~~~~l~-~mk~GgilvnvG~~~~  293 (413)
T cd00401         259 DIFVTTTG----NKDIITGEHFE-QMKDGAIVCNIGHFDV  293 (413)
T ss_pred             CEEEECCC----CHHHHHHHHHh-cCCCCcEEEEeCCCCC
Confidence            99998753    45788888899 9999999999999864

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.09  E-value=1.2e-10  Score=104.22  Aligned_cols=92  Identities=21%  Similarity=0.246  Sum_probs=76.1

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~  231 (269)
                      .+|++||+|.||..+|++|...|++|.+|||++.+..                 +.....+  ...+..++.+++|+|++
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~-----------------~~~~~~Ga~~a~s~~eaa~~aDvVit   63 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAA-----------------ELLAAAGATVAASPAEAAAEADVVIT   63 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhh-----------------HHHHHcCCcccCCHHHHHHhCCEEEE
Confidence            4899999999999999999999999999999987621                 1122222  34677899999999999


Q ss_pred             ecCCCccccCcCC--HHHHhhhCCCCcEEEEccC
Q 024297          232 CLSLNKQTVKLCS--SSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       232 ~lp~t~~t~~li~--~~~l~~~mk~ga~lIN~~R  263 (269)
                      ++|..++.+..+.  ...++ .+|+|+++|+++-
T Consensus        64 mv~~~~~V~~V~~g~~g~~~-~~~~G~i~IDmST   96 (286)
T COG2084          64 MLPDDAAVRAVLFGENGLLE-GLKPGAIVIDMST   96 (286)
T ss_pred             ecCCHHHHHHHHhCccchhh-cCCCCCEEEECCC
Confidence            9999999888774  45788 9999999999873

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.04  E-value=2.7e-10  Score=102.59  Aligned_cols=93  Identities=16%  Similarity=0.146  Sum_probs=73.1

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEEe
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCC  232 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~~  232 (269)
                      +|||||+|.||+.+|+.|...|++|++|||++.+...                  ....+  ...+..+++++||+|+++
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~------------------~~~~g~~~~~~~~~~~~~aDivi~~   62 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADE------------------LLAAGAVTAETARQVTEQADVIFTM   62 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHH------------------HHHCCCcccCCHHHHHhcCCEEEEe
Confidence            5899999999999999999999999999998644211                  11111  235788999999999999


Q ss_pred             cCCCccccCcC-C-HHHHhhhCCCCcEEEEccCCCC
Q 024297          233 LSLNKQTVKLC-S-SSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       233 lp~t~~t~~li-~-~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      +|.+++++.++ + ...+. .+++|+++||+++...
T Consensus        63 vp~~~~~~~v~~~~~~~~~-~~~~g~iivd~st~~~   97 (291)
T TIGR01505        63 VPDSPQVEEVAFGENGIIE-GAKPGKTLVDMSSISP   97 (291)
T ss_pred             cCCHHHHHHHHcCcchHhh-cCCCCCEEEECCCCCH
Confidence            99877777664 3 33567 8899999999988754

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.00  E-value=5.2e-10  Score=100.90  Aligned_cols=94  Identities=18%  Similarity=0.192  Sum_probs=74.0

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~  231 (269)
                      ++|||||+|.||+.+|+.+...|++|++||+++.+...                  ....+  ...+.+++++++|+|++
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~------------------~~~~g~~~~~~~~e~~~~~d~vi~   64 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAE------------------VIAAGAETASTAKAVAEQCDVIIT   64 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHH------------------HHHCCCeecCCHHHHHhcCCEEEE
Confidence            58999999999999999999999999999987644110                  01111  23578899999999999


Q ss_pred             ecCCCccccCcCC--HHHHhhhCCCCcEEEEccCCCC
Q 024297          232 CLSLNKQTVKLCS--SSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       232 ~lp~t~~t~~li~--~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      ++|.+++++.++.  .+.+. .+++|+++||++....
T Consensus        65 ~vp~~~~~~~v~~~~~~~~~-~~~~g~iiid~st~~~  100 (296)
T PRK11559         65 MLPNSPHVKEVALGENGIIE-GAKPGTVVIDMSSIAP  100 (296)
T ss_pred             eCCCHHHHHHHHcCcchHhh-cCCCCcEEEECCCCCH
Confidence            9998887777663  23567 8999999999988653

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.98  E-value=6.9e-10  Score=104.20  Aligned_cols=96  Identities=19%  Similarity=0.158  Sum_probs=71.2

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC--CccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA--SHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      ..|+||+|+|||+|++|++.|..|+..|.+|++--|...  .....+             +.....-....++++++++|
T Consensus        32 ~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~-------------~kA~~dGF~v~~~~Ea~~~A   98 (487)
T PRK05225         32 SYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASW-------------RKATENGFKVGTYEELIPQA   98 (487)
T ss_pred             HHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchH-------------HHHHhcCCccCCHHHHHHhC
Confidence            679999999999999999999999999998885554321  000000             00001111456899999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEE
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVF  260 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN  260 (269)
                      |+|++.+|.+ + ++.+.++.+. .||+|+.|.-
T Consensus        99 DvVviLlPDt-~-q~~v~~~i~p-~LK~Ga~L~f  129 (487)
T PRK05225         99 DLVINLTPDK-Q-HSDVVRAVQP-LMKQGAALGY  129 (487)
T ss_pred             CEEEEcCChH-H-HHHHHHHHHh-hCCCCCEEEe
Confidence            9999999988 4 7777788999 9999998853

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.98  E-value=7.8e-09  Score=96.36  Aligned_cols=193  Identities=16%  Similarity=0.090  Sum_probs=109.9

Q ss_pred             CceEEEEeCCCCCHHHHhcC-CCceEEEEccccCCccchhhHhcCCcEEEecCCCCC--C-C--cchHHHHHHHHHHHHh
Q 024297           55 NYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT--G-N--AASCAELTIYLMLGLL  128 (269)
Q Consensus        55 ~~dv~i~~~~~~~~~~l~~~-~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~--~-~--~~~vAE~~l~~~L~~~  128 (269)
                      ++|+++-- ..+.++.++.. ++--++..+....+..-.+.+.++++..........  + .  -.+.|+.+=.......
T Consensus        66 ~~dii~~V-k~p~~~~~~~~~~g~~l~~~~~~a~~~~~~~~l~~~~~t~i~~e~i~~~~~~~~~l~~~~~iaG~~av~~a  144 (370)
T TIGR00518        66 DAELVLKV-KEPLPEEYGYLRHGQILFTYLHLAAERALTDALLDSGTTAIAYETVQTADGALPLLAPMSEVAGRLAAQVG  144 (370)
T ss_pred             cCCEEEEe-CCCCHHHHhhcCCCcEEEEEeccCCCHHHHHHHHHcCCeEEEeeeeeccCCCCccccchhHHHHHHHHHHH
Confidence            48887742 34444445543 454555555554555555667777776665322100  0 0  0123333322221111


Q ss_pred             -hcHHHHHHHHHhCCCC-CCccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccc
Q 024297          129 -RKQNEMRMAIEQKKLG-VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII  206 (269)
Q Consensus       129 -R~~~~~~~~~~~~~w~-~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (269)
                       ..+.   + ...|+-. ...-..+.+++|.|+|+|.+|+.+++.|+.+|++|+++|++..+.......   +    +  
T Consensus       145 a~~~~---~-~~~g~~~~~~~~~~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~---~----g--  211 (370)
T TIGR00518       145 AYHLE---K-TQGGRGVLLGGVPGVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAE---F----G--  211 (370)
T ss_pred             HHHhH---h-hcCCcceeecCCCCCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHh---c----C--
Confidence             1111   0 0001000 001124677889999999999999999999999999999875431110000   0    0  


Q ss_pred             cccccccCCCCCHHHHHhhCCEEEEecCCC-ccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          207 DDLVDEKGCHEDIFEFASKADVVVCCLSLN-KQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       207 ~~~~~~~~~~~~l~ell~~aDvvv~~lp~t-~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ...........++.+.++++|+|+.+++.+ ..+..+++++.++ .||+++++||++
T Consensus       212 ~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~lit~~~l~-~mk~g~vIvDva  267 (370)
T TIGR00518       212 GRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKLVSNSLVA-QMKPGAVIVDVA  267 (370)
T ss_pred             ceeEeccCCHHHHHHHHccCCEEEEccccCCCCCCcCcCHHHHh-cCCCCCEEEEEe
Confidence            000000112246788899999999998653 2356689999999 999999999987

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=98.93  E-value=1.5e-09  Score=98.27  Aligned_cols=95  Identities=17%  Similarity=0.166  Sum_probs=73.8

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccc-cCCCCCHHHHHhhCCEEEEe
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~~aDvvv~~  232 (269)
                      ++|||||+|.||..+|+.|...|++|++||+++.+...                 .... .....+..++++++|+|+++
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~-----------------~~~~g~~~~~s~~~~~~~aDvVi~~   64 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDA-----------------LVDKGATPAASPAQAAAGAEFVITM   64 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHH-----------------HHHcCCcccCCHHHHHhcCCEEEEe
Confidence            37999999999999999999999999999997654211                 1111 01345788899999999999


Q ss_pred             cCCCccccCcCCH--HHHhhhCCCCcEEEEccCCCC
Q 024297          233 LSLNKQTVKLCSS--SLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       233 lp~t~~t~~li~~--~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      +|....++..+..  ..+. .+++|.++||++.+..
T Consensus        65 vp~~~~~~~vl~~~~~i~~-~l~~g~lvid~sT~~p   99 (296)
T PRK15461         65 LPNGDLVRSVLFGENGVCE-GLSRDALVIDMSTIHP   99 (296)
T ss_pred             cCCHHHHHHHHcCcccHhh-cCCCCCEEEECCCCCH
Confidence            9977667766542  3566 7899999999998763

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=98.92  E-value=1.9e-09  Score=97.70  Aligned_cols=92  Identities=17%  Similarity=0.196  Sum_probs=72.5

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhh---CCEE
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK---ADVV  229 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~---aDvv  229 (269)
                      +|||||+|+||+.+|+.|...|.+|++|||+.++...                  ....+  ...+.++++++   +|+|
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~------------------~~~~g~~~~~s~~~~~~~~~~advV   63 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDV------------------AGKLGITARHSLEELVSKLEAPRTI   63 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHH------------------HHHCCCeecCCHHHHHHhCCCCCEE
Confidence            7999999999999999999999999999987644211                  11111  23578888876   6999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      ++++|..+.++.+++ +.+. .+++|.++||++....
T Consensus        64 i~~vp~~~~~~~v~~-~i~~-~l~~g~ivid~st~~~   98 (299)
T PRK12490         64 WVMVPAGEVTESVIK-DLYP-LLSPGDIVVDGGNSRY   98 (299)
T ss_pred             EEEecCchHHHHHHH-HHhc-cCCCCCEEEECCCCCc
Confidence            999997767788774 4667 8999999999987654

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.91  E-value=8e-10  Score=90.45  Aligned_cols=91  Identities=26%  Similarity=0.347  Sum_probs=63.5

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEE
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVV  229 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvv  229 (269)
                      |.+|+|+|||||+.|++.|..|+..|.+|++-.|..++..                 +...+.+ +..++.|+.++||+|
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~-----------------~~A~~~Gf~v~~~~eAv~~aDvV   64 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASW-----------------EKAKADGFEVMSVAEAVKKADVV   64 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHH-----------------HHHHHTT-ECCEHHHHHHC-SEE
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCH-----------------HHHHHCCCeeccHHHHHhhCCEE
Confidence            6899999999999999999999999999999988765321                 1122222 457899999999999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEE
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVF  260 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN  260 (269)
                      ++.+|.. ....+..++... .||+|+.|+-
T Consensus        65 ~~L~PD~-~q~~vy~~~I~p-~l~~G~~L~f   93 (165)
T PF07991_consen   65 MLLLPDE-VQPEVYEEEIAP-NLKPGATLVF   93 (165)
T ss_dssp             EE-S-HH-HHHHHHHHHHHH-HS-TT-EEEE
T ss_pred             EEeCChH-HHHHHHHHHHHh-hCCCCCEEEe
Confidence            9999943 334455566666 9999998874

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.87  E-value=3.4e-09  Score=96.57  Aligned_cols=97  Identities=24%  Similarity=0.291  Sum_probs=68.5

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEE
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVV  229 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvv  229 (269)
                      |.||+|||||+|+||+++|+.|+.+|++|+++++...+....                . .+.+ ...+..+++++||+|
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~----------------a-~~~Gv~~~s~~ea~~~ADiV   63 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKK----------------A-TEDGFKVGTVEEAIPQADLI   63 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHH----------------H-HHCCCEECCHHHHHhcCCEE
Confidence            578999999999999999999999999988766543221110                0 0111 224588899999999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCc
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGV  267 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~v  267 (269)
                      ++++|...+ ...+.++... .++++. +|.++-|--+
T Consensus        64 vLaVpp~~~-~~~v~~ei~~-~l~~g~-iVs~aaG~~i   98 (314)
T TIGR00465        64 MNLLPDEVQ-HEVYEAEIQP-LLKEGK-TLGFSHGFNI   98 (314)
T ss_pred             EEeCCcHhH-HHHHHHHHHh-hCCCCc-EEEEeCCccH
Confidence            999995423 3344455666 788886 7777777443

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PLN02712 arogenate dehydrogenase

Probab=98.85  E-value=3.8e-09  Score=105.18  Aligned_cols=98  Identities=24%  Similarity=0.246  Sum_probs=76.1

Q ss_pred             ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHh
Q 024297          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS  224 (269)
Q Consensus       147 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~  224 (269)
                      .+..+.+++|||||+|.||+.+|+.|+.+|++|++|+++... .. .                 ...+  ...++++++.
T Consensus       363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~-a-----------------~~~Gv~~~~~~~el~~  423 (667)
T PLN02712        363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DE-A-----------------QKLGVSYFSDADDLCE  423 (667)
T ss_pred             ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HH-H-----------------HHcCCeEeCCHHHHHh
Confidence            456788999999999999999999999999999999987421 00 0                 0111  2357888776


Q ss_pred             -hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          225 -KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       225 -~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                       ++|+|++|+| ...+..++.+-... .||+|+++++++-+.
T Consensus       424 ~~aDvVILavP-~~~~~~vi~~l~~~-~lk~g~ivvDv~SvK  463 (667)
T PLN02712        424 EHPEVILLCTS-ILSTEKVLKSLPFQ-RLKRSTLFVDVLSVK  463 (667)
T ss_pred             cCCCEEEECCC-hHHHHHHHHHHHHh-cCCCCcEEEECCCcc
Confidence             5999999999 46778887765555 689999999998763

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.81  E-value=8.8e-09  Score=93.64  Aligned_cols=83  Identities=24%  Similarity=0.254  Sum_probs=67.2

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      .+++|+|||+|.+|+++|+.|...|++|.+|+|+..                             .++.++++++|+|++
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-----------------------------~~~~~~~~~advvi~   53 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-----------------------------LSLAAVLADADVIVS   53 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-----------------------------CCHHHHHhcCCEEEE
Confidence            457899999999999999999999999999998542                             357788899999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      ++|. +..+.+++. .....+++++++|++++|-
T Consensus        54 ~vp~-~~~~~v~~~-l~~~~~~~~~ivi~~s~gi   85 (308)
T PRK14619         54 AVSM-KGVRPVAEQ-VQALNLPPETIIVTATKGL   85 (308)
T ss_pred             ECCh-HHHHHHHHH-HHHhcCCCCcEEEEeCCcc
Confidence            9996 467777633 2220378899999998764

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=98.81  E-value=7.7e-09  Score=93.71  Aligned_cols=92  Identities=18%  Similarity=0.194  Sum_probs=71.9

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhh---CCEE
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK---ADVV  229 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~---aDvv  229 (269)
                      +|||||+|.||+.+|+.|...|.+|.+||+++.+...                  ..+.+  ...+.+++++.   +|+|
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~------------------~~~~g~~~~~~~~e~~~~~~~~dvv   63 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEA------------------LAEEGATGADSLEELVAKLPAPRVV   63 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHH------------------HHHCCCeecCCHHHHHhhcCCCCEE
Confidence            7999999999999999999999999999998654211                  11111  23567788776   6999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      ++++|..+.++.+++ ..+. .+++|.++|+++.+..
T Consensus        64 i~~v~~~~~~~~v~~-~l~~-~l~~g~ivid~st~~~   98 (301)
T PRK09599         64 WLMVPAGEITDATID-ELAP-LLSPGDIVIDGGNSYY   98 (301)
T ss_pred             EEEecCCcHHHHHHH-HHHh-hCCCCCEEEeCCCCCh
Confidence            999997767777764 4667 8999999999987653

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.79  E-value=1.3e-08  Score=92.41  Aligned_cols=93  Identities=22%  Similarity=0.207  Sum_probs=76.6

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      .-+.||++.|.|||..|+.+|++|+++|++|+++...+-+...+                ..+ -.+...++++.+.+|+
T Consensus       205 ~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA----------------~Md-Gf~V~~m~~Aa~~gDi  267 (420)
T COG0499         205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEA----------------AMD-GFRVMTMEEAAKTGDI  267 (420)
T ss_pred             eeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHH----------------hhc-CcEEEEhHHhhhcCCE
Confidence            34799999999999999999999999999999998766542111                111 1134679999999999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +|.+.    -+++.|..+.|. .||+|+++-|+|.
T Consensus       268 fiT~T----GnkdVi~~eh~~-~MkDgaIl~N~GH  297 (420)
T COG0499         268 FVTAT----GNKDVIRKEHFE-KMKDGAILANAGH  297 (420)
T ss_pred             EEEcc----CCcCccCHHHHH-hccCCeEEecccc
Confidence            99985    467999999999 9999999999985

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.75  E-value=3.9e-08  Score=88.05  Aligned_cols=78  Identities=21%  Similarity=0.269  Sum_probs=67.9

Q ss_pred             cccccCCEEEEEecCch-HHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||+|.|||.|.+ |+.++.+|...|++|+.+...                              ..++.+.+++|
T Consensus       153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~------------------------------t~~l~~~~~~A  202 (285)
T PRK14189        153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK------------------------------TRDLAAHTRQA  202 (285)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC------------------------------CCCHHHHhhhC
Confidence            46799999999999999 999999999999999997531                              14688999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |+||++++    +.++++.   + .+|+|+++||+|-
T Consensus       203 DIVV~avG----~~~~i~~---~-~ik~gavVIDVGi  231 (285)
T PRK14189        203 DIVVAAVG----KRNVLTA---D-MVKPGATVIDVGM  231 (285)
T ss_pred             CEEEEcCC----CcCccCH---H-HcCCCCEEEEccc
Confidence            99999998    4578888   4 6899999999984

>PLN02256 arogenate dehydrogenase

Probab=98.73  E-value=1.7e-08  Score=91.73  Aligned_cols=94  Identities=30%  Similarity=0.325  Sum_probs=69.0

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH-hhCCEEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-SKADVVV  230 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDvvv  230 (269)
                      .+++|+|||+|.||+.+|+.|+..|.+|++++++...  ....       ..|     .   ....++++++ .++|+|+
T Consensus        35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~--~~a~-------~~g-----v---~~~~~~~e~~~~~aDvVi   97 (304)
T PLN02256         35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS--DIAA-------ELG-----V---SFFRDPDDFCEEHPDVVL   97 (304)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH--HHHH-------HcC-----C---eeeCCHHHHhhCCCCEEE
Confidence            5679999999999999999999999999999987421  0000       000     0   1235677776 4799999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +++|. ..+..++.+-... .+++++++++++..
T Consensus        98 lavp~-~~~~~vl~~l~~~-~l~~~~iviDv~Sv  129 (304)
T PLN02256         98 LCTSI-LSTEAVLRSLPLQ-RLKRSTLFVDVLSV  129 (304)
T ss_pred             EecCH-HHHHHHHHhhhhh-ccCCCCEEEecCCc
Confidence            99994 4666666553255 68999999999973

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=98.71  E-value=1.6e-08  Score=97.14  Aligned_cols=100  Identities=14%  Similarity=0.056  Sum_probs=73.9

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh---CCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK---ADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDvvv  230 (269)
                      .+||+||+|.||+.+|++|...|++|.+|||+.++...-...     ..+    ..........+++++.+.   +|+|+
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~-----~~~----~Ga~~~~~a~s~~e~v~~l~~~dvIi   77 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-----AKK----EGNLPLYGFKDPEDFVLSIQKPRSVI   77 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHh-----hhh----cCCcccccCCCHHHHHhcCCCCCEEE
Confidence            369999999999999999999999999999987653110000     000    000000123577888775   99999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +++|..+.++.++ ...+. .+++|.++|+++-.
T Consensus        78 ~~v~~~~aV~~Vi-~gl~~-~l~~G~iiID~sT~  109 (493)
T PLN02350         78 ILVKAGAPVDQTI-KALSE-YMEPGDCIIDGGNE  109 (493)
T ss_pred             EECCCcHHHHHHH-HHHHh-hcCCCCEEEECCCC
Confidence            9999988888888 45788 89999999998754

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=98.70  E-value=2.1e-08  Score=90.55  Aligned_cols=88  Identities=16%  Similarity=0.159  Sum_probs=68.2

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEEe
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCC  232 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~~  232 (269)
                      +|||||+|+||..+|+.|...|++|+++++++..  ..                . ...+  ...+..++++++|+|+++
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~--~~----------------~-~~~g~~~~~s~~~~~~~advVi~~   62 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVA--DE----------------L-LSLGAVSVETARQVTEASDIIFIM   62 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhH--HH----------------H-HHcCCeecCCHHHHHhcCCEEEEe
Confidence            6999999999999999999999999999986532  10                1 1111  235778889999999999


Q ss_pred             cCCCccccCcCCH--HHHhhhCCCCcEEEEcc
Q 024297          233 LSLNKQTVKLCSS--SLSSKSMFFATYVVFMF  262 (269)
Q Consensus       233 lp~t~~t~~li~~--~~l~~~mk~ga~lIN~~  262 (269)
                      +|..++.+..+..  ..+. .+++|.++|+++
T Consensus        63 v~~~~~v~~v~~~~~g~~~-~~~~g~ivvd~s   93 (292)
T PRK15059         63 VPDTPQVEEVLFGENGCTK-ASLKGKTIVDMS   93 (292)
T ss_pred             CCChHHHHHHHcCCcchhc-cCCCCCEEEECC
Confidence            9977776665532  2466 789999999986

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.69  E-value=6.3e-09  Score=77.99  Aligned_cols=89  Identities=29%  Similarity=0.393  Sum_probs=62.2

Q ss_pred             EEEEEecCchHHHHHHHhccCC---CEEEEE-cCCCCCccccccccchhhhccccccccccccC---CCCCHHHHHhhCC
Q 024297          155 TVFILGFGNIGVELAKRLRPFG---VKIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASKAD  227 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G---~~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~aD  227 (269)
                      ||||||+|+||+++++.+...|   .+|+.+ +|++++..                 .....+.   ...+..++++++|
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~ad   63 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAA-----------------ELAKEYGVQATADDNEEAAQEAD   63 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHH-----------------HHHHHCTTEEESEEHHHHHHHTS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHH-----------------HHHHhhccccccCChHHhhccCC
Confidence            7999999999999999999999   899954 88765421                 1222222   1237889999999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +|++++|.. ....++.. . . ...++.++|.+.=|
T Consensus        64 vvilav~p~-~~~~v~~~-i-~-~~~~~~~vis~~ag   96 (96)
T PF03807_consen   64 VVILAVKPQ-QLPEVLSE-I-P-HLLKGKLVISIAAG   96 (96)
T ss_dssp             EEEE-S-GG-GHHHHHHH-H-H-HHHTTSEEEEESTT
T ss_pred             EEEEEECHH-HHHHHHHH-H-h-hccCCCEEEEeCCC
Confidence            999999833 33343333 3 4 56789999988644

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.69  E-value=5.1e-07  Score=86.97  Aligned_cols=200  Identities=13%  Similarity=0.040  Sum_probs=112.6

Q ss_pred             CceEEEEeCCCCCHHHHhcC-CCceEEEEccccCCccchhhHhcCCcEEEecCCCC--CCCcchHHHHHHHHHHHHhhcH
Q 024297           55 NYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV--TGNAASCAELTIYLMLGLLRKQ  131 (269)
Q Consensus        55 ~~dv~i~~~~~~~~~~l~~~-~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~--~~~~~~vAE~~l~~~L~~~R~~  131 (269)
                      ++|+++-- ..++.+-++.+ ++--+|....-..|.=-++.+.+++|.+......-  + .+..+--+.-+.-++..|-.
T Consensus        64 ~adiIlkV-~~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vpris-raq~~d~lssma~iAGy~Av  141 (511)
T TIGR00561        64 QSDIILKV-NAPSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRIS-RAQKLDALSSMANIAGYRAI  141 (511)
T ss_pred             cCCEEEEe-CCCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccc-cCCccCcchhhHHHHHHHHH
Confidence            67877742 45555556665 46666766665555545677888998887643110  0 11111111111223333333


Q ss_pred             HHHHHHHHhCCCC--CCccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhh--cccccc
Q 024297          132 NEMRMAIEQKKLG--VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV--KNGIID  207 (269)
Q Consensus       132 ~~~~~~~~~~~w~--~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  207 (269)
                      .+..+.+.+..-.  ... ....+.++.|+|+|.+|...++.++.+|++|+++|++..+......  .+..+  .+. .+
T Consensus       142 i~Aa~~lgr~~~g~~taa-g~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~--lGa~~v~v~~-~e  217 (511)
T TIGR00561       142 IEAAHEFGRFFTGQITAA-GKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS--MGAEFLELDF-KE  217 (511)
T ss_pred             HHHHHHhhhhcCCceecC-CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--cCCeEEeccc-cc
Confidence            3332222211101  111 2456789999999999999999999999999999987654211110  00000  000 00


Q ss_pred             ccccc--cCC----------CCCHHHHHhhCCEEEEec--CCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          208 DLVDE--KGC----------HEDIFEFASKADVVVCCL--SLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       208 ~~~~~--~~~----------~~~l~ell~~aDvvv~~l--p~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +....  +..          ..-+.+.++++|+|+.++  |.. ..-.+++++.++ .||+|+++|+++
T Consensus       218 ~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~-~aP~Lit~emv~-~MKpGsvIVDlA  284 (511)
T TIGR00561       218 EGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGK-PAPKLITEEMVD-SMKAGSVIVDLA  284 (511)
T ss_pred             cccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCC-CCCeeehHHHHh-hCCCCCEEEEee
Confidence            00000  000          011556678899999987  321 123689999999 999999999987

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=98.68  E-value=1.4e-08  Score=92.04  Aligned_cols=92  Identities=13%  Similarity=0.127  Sum_probs=67.9

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHH---HHhhCCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE---FASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e---ll~~aDvvv  230 (269)
                      ++|||||+|.||..+|+.|...|.+|.+|||++.+......        .|     ..   ...++++   .+.++|+|+
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~--------~g-----~~---~~~s~~~~~~~~~~~dvIi   64 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKE--------DR-----TT---GVANLRELSQRLSAPRVVW   64 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--------cC-----Cc---ccCCHHHHHhhcCCCCEEE
Confidence            37999999999999999999999999999998754211000        00     00   1234444   445789999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +++|.. .++.+++ +... .+++|.++|+++-+
T Consensus        65 ~~vp~~-~~~~v~~-~l~~-~l~~g~ivid~st~   95 (298)
T TIGR00872        65 VMVPHG-IVDAVLE-ELAP-TLEKGDIVIDGGNS   95 (298)
T ss_pred             EEcCch-HHHHHHH-HHHh-hCCCCCEEEECCCC
Confidence            999976 7777774 4667 89999999998765

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.67  E-value=1.2e-07  Score=78.86  Aligned_cols=82  Identities=21%  Similarity=0.224  Sum_probs=68.3

Q ss_pred             ccccCCEEEEEecCch-HHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          149 ETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      .++.|++|.|||.|.+ |+.+|+.|...|++|++++|+.                              +++.+.++++|
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------------------------------~~l~~~l~~aD   89 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------------------------------KNLKEHTKQAD   89 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------------------------------hhHHHHHhhCC
Confidence            5699999999999996 8889999999999999998742                              36778999999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCcc
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVS  268 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vd  268 (269)
                      +||++.+..    ++++++.    ++++.++|++|...-+|
T Consensus        90 iVIsat~~~----~ii~~~~----~~~~~viIDla~prdvd  122 (168)
T cd01080          90 IVIVAVGKP----GLVKGDM----VKPGAVVIDVGINRVPD  122 (168)
T ss_pred             EEEEcCCCC----ceecHHH----ccCCeEEEEccCCCccc
Confidence            999998632    3788864    56799999999766543

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.66  E-value=1.7e-08  Score=80.93  Aligned_cols=106  Identities=20%  Similarity=0.240  Sum_probs=73.8

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      .++.++++.|||.|.+|+.++..|...|++ |++++|+.++...-...   +   .+    ..-.....+++.+.+.++|
T Consensus         8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~---~---~~----~~~~~~~~~~~~~~~~~~D   77 (135)
T PF01488_consen    8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEE---F---GG----VNIEAIPLEDLEEALQEAD   77 (135)
T ss_dssp             STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHH---H---TG----CSEEEEEGGGHCHHHHTES
T ss_pred             CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHH---c---Cc----cccceeeHHHHHHHHhhCC
Confidence            479999999999999999999999999996 99999987552111100   0   00    0001113467888999999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCc-EEEEccCCCCcc
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFAT-YVVFMFQGHGVS  268 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga-~lIN~~RG~~vd  268 (269)
                      +|+++.|..   ...++++.++ ..++.. +++++|...=||
T Consensus        78 ivI~aT~~~---~~~i~~~~~~-~~~~~~~~v~Dla~Pr~i~  115 (135)
T PF01488_consen   78 IVINATPSG---MPIITEEMLK-KASKKLRLVIDLAVPRDID  115 (135)
T ss_dssp             EEEE-SSTT---STSSTHHHHT-TTCHHCSEEEES-SS-SB-
T ss_pred             eEEEecCCC---CcccCHHHHH-HHHhhhhceeccccCCCCC
Confidence            999997744   3488998888 555444 999998765554

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.64  E-value=1.3e-07  Score=85.24  Aligned_cols=77  Identities=18%  Similarity=0.192  Sum_probs=66.2

Q ss_pred             cccccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||+|+|||.| .||+.+|.+|...|++|+.+++..                              .++.++.++|
T Consensus       154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t------------------------------~~l~e~~~~A  203 (301)
T PRK14194        154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS------------------------------TDAKALCRQA  203 (301)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC------------------------------CCHHHHHhcC
Confidence            468999999999996 999999999999999999997532                              3678999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|+++++..    +++...    .+|+|+++|++|
T Consensus       204 DIVIsavg~~----~~v~~~----~ik~GaiVIDvg  231 (301)
T PRK14194        204 DIVVAAVGRP----RLIDAD----WLKPGAVVIDVG  231 (301)
T ss_pred             CEEEEecCCh----hcccHh----hccCCcEEEEec
Confidence            9999999843    566663    478999999998

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=98.63  E-value=3.5e-08  Score=87.85  Aligned_cols=93  Identities=22%  Similarity=0.231  Sum_probs=71.8

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCC
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  227 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  227 (269)
                      +.+.++||+||+|.||..++..|...|++|++|||+.++.                  ..+.+.+  ..++-.|+.+.||
T Consensus        32 ~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~------------------~~f~~~Ga~v~~sPaeVae~sD   93 (327)
T KOG0409|consen   32 TPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKC------------------KEFQEAGARVANSPAEVAEDSD   93 (327)
T ss_pred             CcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHH------------------HHHHHhchhhhCCHHHHHhhcC
Confidence            4568899999999999999999999999999999987662                  1222223  3467889999999


Q ss_pred             EEEEecCCCccccCcCCH--HHHhhhCCCCcEE-EEc
Q 024297          228 VVVCCLSLNKQTVKLCSS--SLSSKSMFFATYV-VFM  261 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~--~~l~~~mk~ga~l-IN~  261 (269)
                      +|+.++|...+.+.++..  ..|+ ..++|... |+.
T Consensus        94 vvitmv~~~~~v~~v~~g~~Gvl~-g~~~g~~~~vDm  129 (327)
T KOG0409|consen   94 VVITMVPNPKDVKDVLLGKSGVLS-GIRPGKKATVDM  129 (327)
T ss_pred             EEEEEcCChHhhHHHhcCCCccee-eccCCCceEEec
Confidence            999999988887776533  2455 56676554 554

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=98.63  E-value=2.8e-08  Score=89.45  Aligned_cols=86  Identities=17%  Similarity=0.184  Sum_probs=67.6

Q ss_pred             EEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEEecCC
Q 024297          158 ILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSL  235 (269)
Q Consensus       158 IiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~~lp~  235 (269)
                      |||+|.||..+|+.|...|.+|++|||+..+...                  ....+  ...+..++++++|+|++++|.
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~------------------l~~~g~~~~~s~~~~~~~advVil~vp~   62 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEE------------------AVAAGAQAAASPAEAAEGADRVITMLPA   62 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHH------------------HHHcCCeecCCHHHHHhcCCEEEEeCCC
Confidence            6899999999999999999999999987654211                  11111  235788999999999999997


Q ss_pred             CccccCcCC--HHHHhhhCCCCcEEEEcc
Q 024297          236 NKQTVKLCS--SSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       236 t~~t~~li~--~~~l~~~mk~ga~lIN~~  262 (269)
                      .++++.++.  ...+. .+++|.++||++
T Consensus        63 ~~~~~~v~~g~~~l~~-~~~~g~~vid~s   90 (288)
T TIGR01692        63 GQHVISVYSGDEGILP-KVAKGSLLIDCS   90 (288)
T ss_pred             hHHHHHHHcCcchHhh-cCCCCCEEEECC
Confidence            677777662  34666 789999999987

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PLN02858 fructose-bisphosphate aldolase

Probab=98.63  E-value=4e-08  Score=104.65  Aligned_cols=92  Identities=21%  Similarity=0.145  Sum_probs=74.9

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVV  229 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvv  229 (269)
                      +.++||+||+|.||..+|++|...|++|.+|||++.+..                  .+.+.+  ...+..++.++||+|
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~------------------~l~~~Ga~~~~s~~e~a~~advV   64 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLME------------------KFCELGGHRCDSPAEAAKDAAAL   64 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHH------------------HHHHcCCeecCCHHHHHhcCCEE
Confidence            457899999999999999999999999999999876521                  111111  346899999999999


Q ss_pred             EEecCCCccccCcC--CHHHHhhhCCCCcEEEEcc
Q 024297          230 VCCLSLNKQTVKLC--SSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       230 v~~lp~t~~t~~li--~~~~l~~~mk~ga~lIN~~  262 (269)
                      ++++|..++++.++  ....+. .+++|.++|+++
T Consensus        65 i~~l~~~~~v~~V~~g~~g~~~-~l~~g~iivd~S   98 (1378)
T PLN02858         65 VVVLSHPDQVDDVFFGDEGAAK-GLQKGAVILIRS   98 (1378)
T ss_pred             EEEcCChHHHHHHHhchhhHHh-cCCCcCEEEECC
Confidence            99999888888876  344677 899999999986

>PLN02858 fructose-bisphosphate aldolase

Probab=98.63  E-value=3.6e-08  Score=104.97  Aligned_cols=93  Identities=16%  Similarity=0.170  Sum_probs=74.2

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEEE
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVC  231 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~  231 (269)
                      .++|||||+|.||..+|+.|...|++|++||+++.+...                 ...... ...+..+++++||+|++
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~-----------------l~~~Ga~~~~s~~e~~~~aDvVi~  386 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVR-----------------FENAGGLAGNSPAEVAKDVDVLVI  386 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-----------------HHHcCCeecCCHHHHHhcCCEEEE
Confidence            488999999999999999999999999999987654211                 111101 23678899999999999


Q ss_pred             ecCCCccccCcC--CHHHHhhhCCCCcEEEEccC
Q 024297          232 CLSLNKQTVKLC--SSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       232 ~lp~t~~t~~li--~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ++|..++++.++  +...+. .+++|.++|+++-
T Consensus       387 ~V~~~~~v~~Vl~g~~g~~~-~l~~g~ivVd~ST  419 (1378)
T PLN02858        387 MVANEVQAENVLFGDLGAVS-ALPAGASIVLSST  419 (1378)
T ss_pred             ecCChHHHHHHHhchhhHHh-cCCCCCEEEECCC
Confidence            999888888876  345678 8999999999864

>PLN02712 arogenate dehydrogenase

Probab=98.61  E-value=4.5e-08  Score=97.58  Aligned_cols=93  Identities=27%  Similarity=0.304  Sum_probs=70.0

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHH-hh
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA-SK  225 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell-~~  225 (269)
                      ..-+.++|||||+|.||+.+|+.|+.+|++|++++++.... .                  ....+  ...++++++ .+
T Consensus        48 ~~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~-~------------------A~~~Gv~~~~d~~e~~~~~  108 (667)
T PLN02712         48 DNTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSL-A------------------ARSLGVSFFLDPHDLCERH  108 (667)
T ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHH-H------------------HHHcCCEEeCCHHHHhhcC
Confidence            34455789999999999999999999999999999863221 0                  11111  235677765 46


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +|+|++|+|. ..+..++..-.+. .++++++|++++
T Consensus       109 aDvViLavP~-~~~~~vl~~l~~~-~l~~g~iVvDv~  143 (667)
T PLN02712        109 PDVILLCTSI-ISTENVLKSLPLQ-RLKRNTLFVDVL  143 (667)
T ss_pred             CCEEEEcCCH-HHHHHHHHhhhhh-cCCCCeEEEECC
Confidence            9999999994 4677777664446 799999999996

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=98.58  E-value=6.6e-08  Score=92.69  Aligned_cols=100  Identities=13%  Similarity=0.127  Sum_probs=74.2

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh---hCCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS---KADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDvvv  230 (269)
                      .+|||||+|.||..+|+.|...|++|.+|||+.++.......     -.+    ... ......++++++.   ++|+|+
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~-----~~~----~g~-~i~~~~s~~e~v~~l~~~d~Ii   71 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKK-----AKE----GNT-RVKGYHTLEELVNSLKKPRKVI   71 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh-----hhh----cCC-cceecCCHHHHHhcCCCCCEEE
Confidence            479999999999999999999999999999987652111000     000    000 0112467888886   589999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +++|..+.++.+++ +.+. .+++|.++|+.+-+.
T Consensus        72 l~v~~~~~v~~vi~-~l~~-~L~~g~iIID~gn~~  104 (470)
T PTZ00142         72 LLIKAGEAVDETID-NLLP-LLEKGDIIIDGGNEW  104 (470)
T ss_pred             EEeCChHHHHHHHH-HHHh-hCCCCCEEEECCCCC
Confidence            99998888888884 4777 899999999998653

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.55  E-value=1.1e-07  Score=81.45  Aligned_cols=95  Identities=22%  Similarity=0.212  Sum_probs=66.9

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHh-h
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS-K  225 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~-~  225 (269)
                      +.++.|++++|+|+|++|+.+|+.|..+|++|+++|++......                 ....++ ...+.++++. +
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~-----------------~~~~~g~~~v~~~~l~~~~   85 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVAR-----------------AAELFGATVVAPEEIYSVD   85 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH-----------------HHHHcCCEEEcchhhcccc
Confidence            46799999999999999999999999999999999987543110                 001101 1112345554 8


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      +|+++.+..     .++++++.++ .|+. .+++--+=+++
T Consensus        86 ~Dv~vp~A~-----~~~I~~~~~~-~l~~-~~v~~~AN~~~  119 (200)
T cd01075          86 ADVFAPCAL-----GGVINDDTIP-QLKA-KAIAGAANNQL  119 (200)
T ss_pred             CCEEEeccc-----ccccCHHHHH-HcCC-CEEEECCcCcc
Confidence            999987754     3689999998 8874 45665555544

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.53  E-value=3.5e-08  Score=81.12  Aligned_cols=105  Identities=16%  Similarity=0.197  Sum_probs=64.3

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS  234 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp  234 (269)
                      +|+|+|.|++|.++|..|...|.+|..|.|+.+....-........+..+  ........-..+++++++.+|+|++++|
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~--~~l~~~i~~t~dl~~a~~~ad~IiiavP   78 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPG--IKLPENIKATTDLEEALEDADIIIIAVP   78 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTT--SBEETTEEEESSHHHHHTT-SEEEE-S-
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCC--cccCcccccccCHHHHhCcccEEEeccc
Confidence            68999999999999999999999999999875321110000000001111  0111111124689999999999999999


Q ss_pred             CCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          235 LNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       235 ~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      .. ..+.++.. ... .++++..+|++..|
T Consensus        79 s~-~~~~~~~~-l~~-~l~~~~~ii~~~KG  105 (157)
T PF01210_consen   79 SQ-AHREVLEQ-LAP-YLKKGQIIISATKG  105 (157)
T ss_dssp             GG-GHHHHHHH-HTT-TSHTT-EEEETS-S
T ss_pred             HH-HHHHHHHH-Hhh-ccCCCCEEEEecCC
Confidence            43 33444333 334 67889999999877

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=98.53  E-value=1.8e-07  Score=83.33  Aligned_cols=93  Identities=19%  Similarity=0.203  Sum_probs=75.4

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      -+.||.+.|.|||.+|+..|+.|++||++|++....+-...++.                 -+-.+...++|+.++.|++
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAa-----------------MeG~~V~tm~ea~~e~dif  273 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAA-----------------MEGYEVTTLEEAIREVDIF  273 (434)
T ss_pred             eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHH-----------------hhccEeeeHHHhhhcCCEE
Confidence            46899999999999999999999999999999876553321111                 0111457899999999999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      |.+.    -.+.+|..+.|. +||.++++-|+|.-
T Consensus       274 VTtT----Gc~dii~~~H~~-~mk~d~IvCN~Ghf  303 (434)
T KOG1370|consen  274 VTTT----GCKDIITGEHFD-QMKNDAIVCNIGHF  303 (434)
T ss_pred             EEcc----CCcchhhHHHHH-hCcCCcEEeccccc
Confidence            9875    467899999999 99999999999864

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.53  E-value=6.9e-08  Score=87.14  Aligned_cols=108  Identities=19%  Similarity=0.169  Sum_probs=70.4

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccc---cchhhhccccccc-----cccccCCCCCHHHHHhh
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ---SSALAVKNGIIDD-----LVDEKGCHEDIFEFASK  225 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~~  225 (269)
                      ++|+|||.|.||..+|+.+...|++|++||++..........   ........|.+..     ........++. +.+++
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~   83 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELRD   83 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhCC
Confidence            689999999999999999999999999999876542100000   0000001111000     00000012344 56899


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEE-EccC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVV-FMFQ  263 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lI-N~~R  263 (269)
                      ||+|+.++|..++.+..+-++... .++++++|+ |++-
T Consensus        84 aD~Vieav~e~~~~k~~v~~~l~~-~~~~~~il~s~tS~  121 (295)
T PLN02545         84 ADFIIEAIVESEDLKKKLFSELDR-ICKPSAILASNTSS  121 (295)
T ss_pred             CCEEEEcCccCHHHHHHHHHHHHh-hCCCCcEEEECCCC
Confidence            999999999888887776666666 899999987 6654

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.53  E-value=3.9e-07  Score=81.74  Aligned_cols=78  Identities=17%  Similarity=0.223  Sum_probs=66.8

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||++.|||.|. +|+.+|.+|...|++|+.+++..                              .++.+.+++|
T Consensus       153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------------------------~~l~~~~~~A  202 (286)
T PRK14175        153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------------------------KDMASYLKDA  202 (286)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHHHhhC
Confidence            3579999999999999 99999999999999999987521                              3688999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |+|+++++-    .++++++    .+|+|+++|++|=
T Consensus       203 DIVIsAvg~----p~~i~~~----~vk~gavVIDvGi  231 (286)
T PRK14175        203 DVIVSAVGK----PGLVTKD----VVKEGAVIIDVGN  231 (286)
T ss_pred             CEEEECCCC----CcccCHH----HcCCCcEEEEcCC
Confidence            999999973    3578874    4688999999984

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=98.51  E-value=1.1e-07  Score=85.34  Aligned_cols=90  Identities=22%  Similarity=0.329  Sum_probs=62.4

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS  234 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp  234 (269)
                      +|+|||+|.||..+|..|+..|.+|++|+++........        ..|.    ...  ...+. +.++++|+|++++|
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~--------~~g~----~~~--~~~~~-~~~~~aDlVilavp   66 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAI--------ERGL----VDE--ASTDL-SLLKDCDLVILALP   66 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH--------HCCC----ccc--ccCCH-hHhcCCCEEEEcCC
Confidence            799999999999999999999999999998654311100        0110    000  11233 46789999999999


Q ss_pred             CCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          235 LNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       235 ~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      .. ....++ ++... .+++++++++++
T Consensus        67 ~~-~~~~~~-~~l~~-~l~~~~ii~d~~   91 (279)
T PRK07417         67 IG-LLLPPS-EQLIP-ALPPEAIVTDVG   91 (279)
T ss_pred             HH-HHHHHH-HHHHH-hCCCCcEEEeCc
Confidence            43 333443 34556 789999999886

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.51  E-value=4.7e-07  Score=84.61  Aligned_cols=79  Identities=16%  Similarity=0.153  Sum_probs=63.9

Q ss_pred             cCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       152 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      ..++|+||| +|.||..+|+.|+..|.+|.+++++..                             .+.++++++||+|+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-----------------------------~~~~~~~~~aDlVi  147 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-----------------------------DRAEDILADAGMVI  147 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-----------------------------hhHHHHHhcCCEEE
Confidence            458999999 999999999999999999999997421                             24567889999999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +++|.. .+..++.  .+. .+++|+++++++-
T Consensus       148 lavP~~-~~~~~~~--~l~-~l~~~~iv~Dv~S  176 (374)
T PRK11199        148 VSVPIH-LTEEVIA--RLP-PLPEDCILVDLTS  176 (374)
T ss_pred             EeCcHH-HHHHHHH--HHh-CCCCCcEEEECCC
Confidence            999965 3455552  356 4899999999964

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=98.50  E-value=1.3e-07  Score=90.64  Aligned_cols=97  Identities=11%  Similarity=0.124  Sum_probs=69.9

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH---hhCCEEEE
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA---SKADVVVC  231 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDvvv~  231 (269)
                      .|||||+|.||..+|+.|...|++|.+|||+..+.......     ..+|      .......+++++.   +++|+|++
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~-----~~~g------~~~~~~~s~~e~v~~l~~~dvIil   69 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAE-----HAKG------KKIVGAYSIEEFVQSLERPRKIML   69 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhh-----ccCC------CCceecCCHHHHHhhcCCCCEEEE
Confidence            38999999999999999999999999999987653111000     0000      0001224556655   46899999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      ++|..+.+..+++ +.+. .+++|.++|+.+-.
T Consensus        70 ~v~~~~~v~~Vi~-~l~~-~L~~g~iIID~gns  100 (467)
T TIGR00873        70 MVKAGAPVDAVIN-QLLP-LLEKGDIIIDGGNS  100 (467)
T ss_pred             ECCCcHHHHHHHH-HHHh-hCCCCCEEEECCCc
Confidence            9998777888774 4667 89999999999754

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.48  E-value=1e-07  Score=85.86  Aligned_cols=109  Identities=12%  Similarity=0.122  Sum_probs=68.9

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccc---hhhhcccccccc-----ccccCCCCCHHHHHhh
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSS---ALAVKNGIIDDL-----VDEKGCHEDIFEFASK  225 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~l~ell~~  225 (269)
                      ++|+|||.|.||..+|..+...|++|++||++............   ......|.+...     ........++.+.+++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            58999999999999999999999999999987654211100000   000001111000     0000123578889999


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEE-EEccC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYV-VFMFQ  263 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~l-IN~~R  263 (269)
                      ||+|+.++|...+.+..+-.+..+ .+++++++ +|++-
T Consensus        82 aD~Vi~avpe~~~~k~~~~~~l~~-~~~~~~il~~~tSt  119 (288)
T PRK09260         82 ADLVIEAVPEKLELKKAVFETADA-HAPAECYIATNTST  119 (288)
T ss_pred             CCEEEEeccCCHHHHHHHHHHHHh-hCCCCcEEEEcCCC
Confidence            999999999766554433333455 78999877 67763

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.47  E-value=2.2e-07  Score=82.43  Aligned_cols=90  Identities=19%  Similarity=0.237  Sum_probs=65.8

Q ss_pred             CEEEEEecCchHHHHHHHhccCCC----EEEEE-cCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGV----KIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKA  226 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~----~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~a  226 (269)
                      .+|||||+|+||.++++.|...|.    +|+++ +|+..+.. .                 ....+  ...+..++++++
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~-~-----------------~~~~g~~~~~~~~e~~~~a   62 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRD-V-----------------FQSLGVKTAASNTEVVKSS   62 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHH-H-----------------HHHcCCEEeCChHHHHhcC
Confidence            379999999999999999998887    89999 87654411 1                 11111  235677888999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      |+|++++| .+..+.++. +... .++++.++|++.-|
T Consensus        63 DvVil~v~-~~~~~~vl~-~l~~-~~~~~~~iIs~~~g   97 (266)
T PLN02688         63 DVIILAVK-PQVVKDVLT-ELRP-LLSKDKLLVSVAAG   97 (266)
T ss_pred             CEEEEEEC-cHHHHHHHH-HHHh-hcCCCCEEEEecCC
Confidence            99999997 555666653 3445 67889999987555

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.47  E-value=3.6e-07  Score=74.17  Aligned_cols=97  Identities=21%  Similarity=0.213  Sum_probs=67.1

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhccccccccccc--cCCCCCHHHHHhhC
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE--KGCHEDIFEFASKA  226 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~a  226 (269)
                      .+.+++++|+|.|.+|+.+++.+...| .+|.+++++..+......             .....  .....+..++++++
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~   82 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAE-------------RFGELGIAIAYLDLEELLAEA   82 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH-------------HHhhcccceeecchhhccccC
Confidence            467889999999999999999999886 789999987654211000             00000  01235677778999


Q ss_pred             CEEEEecCCCcc-ccC-cCCHHHHhhhCCCCcEEEEccC
Q 024297          227 DVVVCCLSLNKQ-TVK-LCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       227 Dvvv~~lp~t~~-t~~-li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |+|++++|.... ... .+..   . .++++.++++++-
T Consensus        83 Dvvi~~~~~~~~~~~~~~~~~---~-~~~~~~~v~D~~~  117 (155)
T cd01065          83 DLIINTTPVGMKPGDELPLPP---S-LLKPGGVVYDVVY  117 (155)
T ss_pred             CEEEeCcCCCCCCCCCCCCCH---H-HcCCCCEEEEcCc
Confidence            999999997653 222 2222   3 5789999999864

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.46  E-value=2.4e-07  Score=82.89  Aligned_cols=108  Identities=20%  Similarity=0.194  Sum_probs=79.1

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD  227 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD  227 (269)
                      ......+|.|||.|-+|...|+.+.++|.+|+..|++.++- ...+         ........... +...+++.+.++|
T Consensus       164 pGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl-~~ld---------d~f~~rv~~~~st~~~iee~v~~aD  233 (371)
T COG0686         164 PGVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRL-RQLD---------DLFGGRVHTLYSTPSNIEEAVKKAD  233 (371)
T ss_pred             CCCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHH-hhhh---------HhhCceeEEEEcCHHHHHHHhhhcc
Confidence            34667789999999999999999999999999999986541 1110         00000111111 4467999999999


Q ss_pred             EEEEecCCC-ccccCcCCHHHHhhhCCCCcEEEEcc--CCCCc
Q 024297          228 VVVCCLSLN-KQTVKLCSSSLSSKSMFFATYVVFMF--QGHGV  267 (269)
Q Consensus       228 vvv~~lp~t-~~t~~li~~~~l~~~mk~ga~lIN~~--RG~~v  267 (269)
                      +||.++--+ .+.-.++.+++++ .||||+++|+++  .|.++
T Consensus       234 lvIgaVLIpgakaPkLvt~e~vk-~MkpGsVivDVAiDqGGc~  275 (371)
T COG0686         234 LVIGAVLIPGAKAPKLVTREMVK-QMKPGSVIVDVAIDQGGCF  275 (371)
T ss_pred             EEEEEEEecCCCCceehhHHHHH-hcCCCcEEEEEEEcCCCce
Confidence            999886433 3455688998899 999999999998  55554

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.45  E-value=1.6e-07  Score=83.98  Aligned_cols=95  Identities=17%  Similarity=0.286  Sum_probs=68.7

Q ss_pred             CEEEEEecCchHHHHHHHhccCCC----EEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGV----KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  227 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~----~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  227 (269)
                      ++|||||+|+||+++++.|...|.    +|++++|+..+..                 ......+  ...+..+++.+||
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~-----------------~l~~~~g~~~~~~~~e~~~~aD   65 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLK-----------------NASDKYGITITTNNNEVANSAD   65 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHH-----------------HHHHhcCcEEeCCcHHHHhhCC
Confidence            589999999999999999987664    6999998764411                 1111111  2356778899999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCcc
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVS  268 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vd  268 (269)
                      +|++++| ......++. +... .++++.++|.+.=|--++
T Consensus        66 iIiLavk-P~~~~~vl~-~l~~-~~~~~~lvISi~AGi~i~  103 (272)
T PRK12491         66 ILILSIK-PDLYSSVIN-QIKD-QIKNDVIVVTIAAGKSIK  103 (272)
T ss_pred             EEEEEeC-hHHHHHHHH-HHHH-hhcCCcEEEEeCCCCcHH
Confidence            9999999 456666653 2434 678899999998875543

>PRK06545 prephenate dehydrogenase; Validated

Probab=98.44  E-value=2.2e-07  Score=86.35  Aligned_cols=96  Identities=24%  Similarity=0.308  Sum_probs=65.7

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l  233 (269)
                      ++|+|||+|.||..+|+.|+..|.+|.+++++........      ...-|    ..+.  ...++++++++||+|++++
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~------a~~~~----~~~~--~~~~~~~~~~~aDlVilav   68 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLAR------ALGFG----VIDE--LAADLQRAAAEADLIVLAV   68 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHH------HhcCC----CCcc--cccCHHHHhcCCCEEEEeC
Confidence            4799999999999999999999999888887654421100      00000    0010  1256788899999999999


Q ss_pred             CCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          234 SLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       234 p~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |. ..+..++.+ .....+++++++.+++-
T Consensus        69 P~-~~~~~vl~~-l~~~~l~~~~ivtDv~S   96 (359)
T PRK06545         69 PV-DATAALLAE-LADLELKPGVIVTDVGS   96 (359)
T ss_pred             CH-HHHHHHHHH-HhhcCCCCCcEEEeCcc
Confidence            95 456666533 32202788999988764

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.43  E-value=8.5e-07  Score=80.06  Aligned_cols=76  Identities=16%  Similarity=0.225  Sum_probs=64.4

Q ss_pred             cccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEc-CCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh
Q 024297          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATK-RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK  225 (269)
Q Consensus       148 ~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  225 (269)
                      +.++.||+|+||| .|.+|+.+|.+|...|+.|++++ ++                               .++++++++
T Consensus       153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT-------------------------------~~l~e~~~~  201 (296)
T PRK14188        153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRT-------------------------------RDLPAVCRR  201 (296)
T ss_pred             CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCC-------------------------------CCHHHHHhc
Confidence            3579999999999 99999999999999999999995 32                               257789999


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ||+|+++++..    +++...    .+|+|+++|++|
T Consensus       202 ADIVIsavg~~----~~v~~~----~lk~GavVIDvG  230 (296)
T PRK14188        202 ADILVAAVGRP----EMVKGD----WIKPGATVIDVG  230 (296)
T ss_pred             CCEEEEecCCh----hhcchh----eecCCCEEEEcC
Confidence            99999999843    355552    478999999998

>PRK08818 prephenate dehydrogenase; Provisional

Probab=98.43  E-value=4.2e-07  Score=84.58  Aligned_cols=83  Identities=19%  Similarity=0.182  Sum_probs=63.7

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhcc-CCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRP-FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      +...||+|||+ |.||+.+|+.|+. +|.+|+++|+...                           ...++.+.+++||+
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~---------------------------~~~~~~~~v~~aDl   54 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP---------------------------GSLDPATLLQRADV   54 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc---------------------------ccCCHHHHhcCCCE
Confidence            35679999999 9999999999995 5999999997421                           12467788999999


Q ss_pred             EEEecCCCccccCcCCHHHHh--hhCCCCcEEEEcc
Q 024297          229 VVCCLSLNKQTVKLCSSSLSS--KSMFFATYVVFMF  262 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~--~~mk~ga~lIN~~  262 (269)
                      |++|+|.. .+..++.+ ...  ..+++++++.+++
T Consensus        55 VilavPv~-~~~~~l~~-l~~~~~~l~~~~iVtDVg   88 (370)
T PRK08818         55 LIFSAPIR-HTAALIEE-YVALAGGRAAGQLWLDVT   88 (370)
T ss_pred             EEEeCCHH-HHHHHHHH-HhhhhcCCCCCeEEEECC
Confidence            99999944 45555443 222  0379999999987

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=98.42  E-value=2.7e-07  Score=83.80  Aligned_cols=94  Identities=21%  Similarity=0.355  Sum_probs=65.2

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      .++|+|||+|.||..+|+.|+..|.  +|++++++........        ..|.    ...  ...++++.++++|+|+
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~--------~~g~----~~~--~~~~~~~~~~~aDvVi   71 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR--------ELGL----GDR--VTTSAAEAVKGADLVI   71 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH--------hCCC----Cce--ecCCHHHHhcCCCEEE
Confidence            4689999999999999999998885  8999998754311100        0010    000  1246778889999999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +++|.. .+..++ ++... .+++++++++++-
T Consensus        72 iavp~~-~~~~v~-~~l~~-~l~~~~iv~dvgs  101 (307)
T PRK07502         72 LCVPVG-ASGAVA-AEIAP-HLKPGAIVTDVGS  101 (307)
T ss_pred             ECCCHH-HHHHHH-HHHHh-hCCCCCEEEeCcc
Confidence            999953 333333 33455 7899999998864

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.41  E-value=4e-07  Score=81.60  Aligned_cols=95  Identities=16%  Similarity=0.202  Sum_probs=66.7

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCC----CEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhh
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK  225 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~  225 (269)
                      .+.+|+|||+|+||+++++.|...|    .+|++++|+..+....                ....++  ...+..+++.+
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~----------------l~~~~g~~~~~~~~e~~~~   65 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQE----------------LHQKYGVKGTHNKKELLTD   65 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHH----------------HHHhcCceEeCCHHHHHhc
Confidence            3568999999999999999999877    6899999865332111                111111  23567788999


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      ||+|++++| +.+....+ .+... .++++.++|++.-|-
T Consensus        66 aDvVilav~-p~~~~~vl-~~l~~-~~~~~~liIs~~aGi  102 (279)
T PRK07679         66 ANILFLAMK-PKDVAEAL-IPFKE-YIHNNQLIISLLAGV  102 (279)
T ss_pred             CCEEEEEeC-HHHHHHHH-HHHHh-hcCCCCEEEEECCCC
Confidence            999999999 44444544 33445 678899999985543

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=98.41  E-value=2.7e-06  Score=70.19  Aligned_cols=78  Identities=24%  Similarity=0.303  Sum_probs=56.9

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||++.|||-+. +|+.++.+|...|+.|+.+..+                              ..++++.+++|
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~------------------------------T~~l~~~~~~A   80 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK------------------------------TKNLQEITRRA   80 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT------------------------------SSSHHHHHTTS
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCC------------------------------CCcccceeeec
Confidence            4579999999999995 9999999999999999998642                              14788999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |+|++++.    ..++|..+    .+|+|+++|++|-
T Consensus        81 DIVVsa~G----~~~~i~~~----~ik~gavVIDvG~  109 (160)
T PF02882_consen   81 DIVVSAVG----KPNLIKAD----WIKPGAVVIDVGI  109 (160)
T ss_dssp             SEEEE-SS----STT-B-GG----GS-TTEEEEE--C
T ss_pred             cEEeeeec----cccccccc----cccCCcEEEecCC
Confidence            99999986    24677764    5789999999874

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.40  E-value=3e-06  Score=81.90  Aligned_cols=199  Identities=13%  Similarity=0.083  Sum_probs=111.3

Q ss_pred             CceEEEEeCCCCCHHHHhcCC-CceEEEEccccCCccchhhHhcCCcEEEecCCCC--C-CC----cchHHHHHHHHHHH
Q 024297           55 NYHLCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV--T-GN----AASCAELTIYLMLG  126 (269)
Q Consensus        55 ~~dv~i~~~~~~~~~~l~~~~-~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~--~-~~----~~~vAE~~l~~~L~  126 (269)
                      ++|+++-- ..++.+-++.++ +--+|..+....+.=-++.+.++||.+......-  + +.    =.++|+.+      
T Consensus        65 ~~diilkV-~~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IA------  137 (509)
T PRK09424         65 QSDIILKV-NAPSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIA------  137 (509)
T ss_pred             cCCEEEEe-CCCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhh------
Confidence            68888742 355555566654 5667776666556555677888998887632211  0 00    01233322      


Q ss_pred             HhhcHHHHHHHHHhCCCCCC---ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcc
Q 024297          127 LLRKQNEMRMAIEQKKLGVP---TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKN  203 (269)
Q Consensus       127 ~~R~~~~~~~~~~~~~w~~~---~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~  203 (269)
                      .+|-+.+..+.+  ++....   ......+.+|.|+|.|.+|...++.++.+|++|+++|++..+.......-..+...+
T Consensus       138 Gy~Av~~aa~~~--~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~  215 (509)
T PRK09424        138 GYRAVIEAAHEF--GRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELD  215 (509)
T ss_pred             HHHHHHHHHHHh--cccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEec
Confidence            233332222221  111111   012457999999999999999999999999999999987655322211100000000


Q ss_pred             ccccccccc-cC--CCCC--------HHHHHhhCCEEEEecCCCcc-ccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          204 GIIDDLVDE-KG--CHED--------IFEFASKADVVVCCLSLNKQ-TVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       204 ~~~~~~~~~-~~--~~~~--------l~ell~~aDvvv~~lp~t~~-t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ...++.... +.  ...+        +.+.++.+|+|+.+...... ...++.++.++ .||+|+++|++|=
T Consensus       216 ~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~-~mkpGgvIVdvg~  286 (509)
T PRK09424        216 FEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVA-SMKPGSVIVDLAA  286 (509)
T ss_pred             cccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHH-hcCCCCEEEEEcc
Confidence            000000000 00  0011        12223579999999864321 23466788999 9999999999983

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.39  E-value=4.7e-07  Score=82.92  Aligned_cols=103  Identities=21%  Similarity=0.120  Sum_probs=68.8

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      ..+|+|||.|.||..+|..|...|.+|++|+|+.+.............+..|.  ..........++.++++.+|+|+++
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~--~~~~~~~~~~~~~e~~~~aD~Vi~~   81 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGV--ALPAELYPTADPEEALAGADFAVVA   81 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCC--cCCCCeEEeCCHHHHHcCCCEEEEE
Confidence            35899999999999999999999999999999654311100000000000010  0000011235788889999999999


Q ss_pred             cCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          233 LSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       233 lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +|.. ++     ++.++ .++++.++|+++.|
T Consensus        82 v~~~-~~-----~~v~~-~l~~~~~vi~~~~G  106 (328)
T PRK14618         82 VPSK-AL-----RETLA-GLPRALGYVSCAKG  106 (328)
T ss_pred             CchH-HH-----HHHHH-hcCcCCEEEEEeec
Confidence            9955 22     55667 89999999999887

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.38  E-value=1.6e-06  Score=77.74  Aligned_cols=77  Identities=19%  Similarity=0.236  Sum_probs=65.3

Q ss_pred             cccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||+|+|||. |.+|+.+|.+|...|++|+.+..   +                           ..++.+.+++|
T Consensus       153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s---~---------------------------t~~l~~~~~~A  202 (284)
T PRK14179        153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHS---R---------------------------TRNLAEVARKA  202 (284)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECC---C---------------------------CCCHHHHHhhC
Confidence            46799999999999 99999999999999999999831   1                           13688999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|+++++..    +++..+    .+|+|+++|++|
T Consensus       203 DIVI~avg~~----~~v~~~----~ik~GavVIDvg  230 (284)
T PRK14179        203 DILVVAIGRG----HFVTKE----FVKEGAVVIDVG  230 (284)
T ss_pred             CEEEEecCcc----ccCCHH----HccCCcEEEEec
Confidence            9999999843    566663    478999999997

>PRK08655 prephenate dehydrogenase; Provisional

Probab=98.37  E-value=4.9e-07  Score=86.17  Aligned_cols=90  Identities=20%  Similarity=0.300  Sum_probs=67.2

Q ss_pred             CEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEE
Q 024297          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv  230 (269)
                      ++|+||| +|.||+.+|+.|+..|.+|++++++......                 .....+  ...+..+.+.++|+|+
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~-----------------~a~~~gv~~~~~~~e~~~~aDvVI   63 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKE-----------------VAKELGVEYANDNIDAAKDADIVI   63 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHH-----------------HHHHcCCeeccCHHHHhccCCEEE
Confidence            3799998 8999999999999999999999987543100                 111111  2346778899999999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +++|. ..+..++ ++... .+++++++++++-
T Consensus        64 lavp~-~~~~~vl-~~l~~-~l~~~~iViDvsS   93 (437)
T PRK08655         64 ISVPI-NVTEDVI-KEVAP-HVKEGSLLMDVTS   93 (437)
T ss_pred             EecCH-HHHHHHH-HHHHh-hCCCCCEEEEccc
Confidence            99995 3555555 33556 7899999999985

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.36  E-value=4.7e-07  Score=85.76  Aligned_cols=102  Identities=23%  Similarity=0.324  Sum_probs=73.3

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      .+.+++|+|+|+|.||+.+++.|...| .+|++++|+..+......             ..........++.+++.++|+
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~-------------~~g~~~i~~~~l~~~l~~aDv  243 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAK-------------ELGGEAVKFEDLEEYLAEADI  243 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-------------HcCCeEeeHHHHHHHHhhCCE
Confidence            488999999999999999999999999 689999997654210000             000001123467788999999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhC-C---CCcEEEEccCCCCcc
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSM-F---FATYVVFMFQGHGVS  268 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~m-k---~ga~lIN~~RG~~vd  268 (269)
                      |+.+.+   .+..+++++.++ .+ +   ...++|+++...=||
T Consensus       244 Vi~aT~---s~~~ii~~e~l~-~~~~~~~~~~~viDla~Prdid  283 (417)
T TIGR01035       244 VISSTG---APHPIVSKEDVE-RALRERTRPLFIIDIAVPRDVD  283 (417)
T ss_pred             EEECCC---CCCceEcHHHHH-HHHhcCCCCeEEEEeCCCCCCC
Confidence            999954   566889999888 54 2   245999998654443

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.36  E-value=3.7e-07  Score=83.51  Aligned_cols=110  Identities=14%  Similarity=0.094  Sum_probs=73.7

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcccccc---ccchhhhccccccc-cccccCCCCCHHHHHhhCCEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC---QSSALAVKNGIIDD-LVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~l~ell~~aDvv  229 (269)
                      ++|+|||.|.||..+|..+...|++|+.||+++........   .........|.... .........+++++++.||+|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV   87 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI   87 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence            68999999999999999999999999999987643111000   00000000110000 001111235788999999999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +-++|.+.+.+.-+-++.-+ .++++++|-...-+
T Consensus        88 iEavpE~l~vK~~lf~~l~~-~~~~~aIlaSnTS~  121 (321)
T PRK07066         88 QESAPEREALKLELHERISR-AAKPDAIIASSTSG  121 (321)
T ss_pred             EECCcCCHHHHHHHHHHHHH-hCCCCeEEEECCCc
Confidence            99999998887766676667 89999977654333

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.35  E-value=1.9e-06  Score=77.22  Aligned_cols=77  Identities=16%  Similarity=0.211  Sum_probs=65.8

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||++.|||.|. +|+.++.+|...|+.|+.+...                              ..++.+.+++|
T Consensus       154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~------------------------------T~~l~~~~~~A  203 (285)
T PRK10792        154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF------------------------------TKNLRHHVRNA  203 (285)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC------------------------------CCCHHHHHhhC
Confidence            3579999999999999 9999999999999999998642                              14688999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|+++++-.    +++..   + .+|+|+++|++|
T Consensus       204 DIvi~avG~p----~~v~~---~-~vk~gavVIDvG  231 (285)
T PRK10792        204 DLLVVAVGKP----GFIPG---E-WIKPGAIVIDVG  231 (285)
T ss_pred             CEEEEcCCCc----ccccH---H-HcCCCcEEEEcc
Confidence            9999999522    46776   3 678999999999

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.34  E-value=4.5e-07  Score=75.33  Aligned_cols=108  Identities=19%  Similarity=0.191  Sum_probs=69.1

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccc--------c------cccC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL--------V------DEKG  214 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~------~~~~  214 (269)
                      ..+...+|.|+|.|.+|+..++.|+++|++|+.+|........ ...  .+  ........        +      ....
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~-~~~--~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~   90 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQ-LES--LG--AYFIEVDYEDHLERKDFDKADYYEHPE   90 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHH-HHH--TT--TEESEETTTTTTTSB-CCHHHCHHHCC
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHh-hhc--cc--CceEEEcccccccccccchhhhhHHHH
Confidence            4577799999999999999999999999999999976542110 000  00  00000000        0      0001


Q ss_pred             -CCCCHHHHHhhCCEEEEe-cCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          215 -CHEDIFEFASKADVVVCC-LSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       215 -~~~~l~ell~~aDvvv~~-lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                       ....|.+.++.+|+|+++ +-..+..-.+++++.++ .||+++++++++
T Consensus        91 ~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~-~m~~gsvIvDis  139 (168)
T PF01262_consen   91 SYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVK-SMKPGSVIVDIS  139 (168)
T ss_dssp             HHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHH-TSSTTEEEEETT
T ss_pred             HhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhh-ccCCCceEEEEE
Confidence             113588999999999864 43466677899999999 999999999986

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.33  E-value=4.8e-07  Score=82.30  Aligned_cols=106  Identities=18%  Similarity=0.213  Sum_probs=67.8

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l  233 (269)
                      ++|+|||.|.||..+|..|...|.+|.+|+|+...............+..+  ...........+.++.++++|+|++++
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~D~vi~~v   79 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPG--IKLPDNLRATTDLAEALADADLILVAV   79 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCC--CcCCCCeEEeCCHHHHHhCCCEEEEeC
Confidence            379999999999999999999999999999865431110000000000000  000000112357778899999999999


Q ss_pred             CCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          234 SLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       234 p~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      |. ..+..++. +... .+++++++|++..|
T Consensus        80 ~~-~~~~~v~~-~l~~-~~~~~~~vi~~~ng  107 (325)
T PRK00094         80 PS-QALREVLK-QLKP-LLPPDAPIVWATKG  107 (325)
T ss_pred             CH-HHHHHHHH-HHHh-hcCCCCEEEEEeec
Confidence            95 45555553 3445 67889999998755

>PLN00203 glutamyl-tRNA reductase

Probab=98.32  E-value=1.2e-06  Score=84.98  Aligned_cols=104  Identities=18%  Similarity=0.180  Sum_probs=73.7

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      ++.+++|+|||.|.||+.+++.|...|+ +|++++|+..+.......     ++ +    ........+++.+++.++|+
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~-----~~-g----~~i~~~~~~dl~~al~~aDV  332 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREE-----FP-D----VEIIYKPLDEMLACAAEADV  332 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH-----hC-C----CceEeecHhhHHHHHhcCCE
Confidence            4889999999999999999999999997 799999987552111000     00 0    00001123567788999999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCC-------CcEEEEccCCCCc
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFF-------ATYVVFMFQGHGV  267 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~-------ga~lIN~~RG~~v  267 (269)
                      |+++.   +....++.++.++ .+++       .-+||+++=..=|
T Consensus       333 VIsAT---~s~~pvI~~e~l~-~~~~~~~~~~~~~~~IDLAvPRdI  374 (519)
T PLN00203        333 VFTST---SSETPLFLKEHVE-ALPPASDTVGGKRLFVDISVPRNV  374 (519)
T ss_pred             EEEcc---CCCCCeeCHHHHH-HhhhcccccCCCeEEEEeCCCCCC
Confidence            99985   4667899999998 7643       2489998855433

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.30  E-value=1.1e-06  Score=83.20  Aligned_cols=93  Identities=15%  Similarity=0.205  Sum_probs=62.1

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH-----------
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-----------  222 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-----------  222 (269)
                      ++|+|||+|.||..+|..|...|.+|++||++..+...         ...|+++.      ....++++           
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~---------l~~g~~~~------~e~~l~~~l~~~~~~g~l~   68 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDT---------INRGEIHI------VEPDLDMVVKTAVEGGYLR   68 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHH---------HHCCCCCc------CCCCHHHHHHHHhhcCcee
Confidence            68999999999999999999999999999987654211         11111100      01233333           


Q ss_pred             ----HhhCCEEEEecCCC------ccccCcCC--HHHHhhhCCCCcEEEEcc
Q 024297          223 ----ASKADVVVCCLSLN------KQTVKLCS--SSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       223 ----l~~aDvvv~~lp~t------~~t~~li~--~~~l~~~mk~ga~lIN~~  262 (269)
                          +++||+|++|+|..      ++...+..  .+... .+++|+++|+.+
T Consensus        69 ~~~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~-~l~~g~iVI~~S  119 (415)
T PRK11064         69 ATTTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAP-VLKKGDLVILES  119 (415)
T ss_pred             eecccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHH-hCCCCCEEEEeC
Confidence                23799999999943      12223321  33455 799999998865

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.30  E-value=9.4e-07  Score=83.52  Aligned_cols=106  Identities=19%  Similarity=0.331  Sum_probs=66.1

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccccc---ccC---CCCCHHHHHhhCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD---EKG---CHEDIFEFASKAD  227 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~l~ell~~aD  227 (269)
                      ++|+|||+|.||..+|..|...|++|++||++..+.........++ +..| .++...   ..+   ...++.++++++|
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~-~e~~-l~~~~~~~~~~g~l~~~~~~~~~~~~ad   78 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPI-YEPG-LDELLAKALAAGRLRATTDYEDAIRDAD   78 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCC-CCCC-HHHHHHHhhhcCCeEEECCHHHHHhhCC
Confidence            3799999999999999999999999999998765421110000000 0000 000000   001   2257788899999


Q ss_pred             EEEEecCCCccc------cCcCC--HHHHhhhCCCCcEEEEcc
Q 024297          228 VVVCCLSLNKQT------VKLCS--SSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       228 vvv~~lp~t~~t------~~li~--~~~l~~~mk~ga~lIN~~  262 (269)
                      +|++++|.....      +.+..  .+... .+++|.++|+.+
T Consensus        79 vvii~vpt~~~~~~~~d~~~v~~~~~~i~~-~l~~g~lvi~~S  120 (411)
T TIGR03026        79 VIIICVPTPLKEDGSPDLSYVESAAETIAK-HLRKGATVVLES  120 (411)
T ss_pred             EEEEEeCCCCCCCCCcChHHHHHHHHHHHH-hcCCCCEEEEeC
Confidence            999999944321      11221  23445 789999999876

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.30  E-value=6.1e-07  Score=80.85  Aligned_cols=107  Identities=15%  Similarity=0.110  Sum_probs=66.7

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcccccc---ccchhhhcccccccc-----ccccCCCCCHHHHHhh
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC---QSSALAVKNGIIDDL-----VDEKGCHEDIFEFASK  225 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~l~ell~~  225 (269)
                      ++|+|||.|.||..+|..+...|.+|++||++.+.......   ......++.|.+...     ........+++ .+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   83 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD   83 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence            68999999999999999999999999999987643211000   000000111111000     00011124564 4789


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEE-Ecc
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVV-FMF  262 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lI-N~~  262 (269)
                      ||+|+.++|..++.+..+-++... .++++++|+ |++
T Consensus        84 aD~Vieavpe~~~~k~~~~~~l~~-~~~~~~ii~s~ts  120 (292)
T PRK07530         84 CDLVIEAATEDETVKRKIFAQLCP-VLKPEAILATNTS  120 (292)
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHh-hCCCCcEEEEcCC
Confidence            999999999766544433344556 889999998 554

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.30  E-value=9.4e-07  Score=78.89  Aligned_cols=91  Identities=26%  Similarity=0.296  Sum_probs=68.8

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCE
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADV  228 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDv  228 (269)
                      -|.||||+|||||+-|++-|..|+..|.+|++--|....+-                 ....+.+ ...+.+|+.++||+
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~-----------------~kA~~dGf~V~~v~ea~k~ADv   77 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSW-----------------KKAKEDGFKVYTVEEAAKRADV   77 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhH-----------------HHHHhcCCEeecHHHHhhcCCE
Confidence            58999999999999999999999999999888777654421                 1111112 45789999999999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEE
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVV  259 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lI  259 (269)
                      |.+.+|... ...++.++.-. .|+.|+.|.
T Consensus        78 im~L~PDe~-q~~vy~~~I~p-~Lk~G~aL~  106 (338)
T COG0059          78 VMILLPDEQ-QKEVYEKEIAP-NLKEGAALG  106 (338)
T ss_pred             EEEeCchhh-HHHHHHHHhhh-hhcCCceEE
Confidence            999999543 34455555555 899998653

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.29  E-value=3e-06  Score=76.24  Aligned_cols=78  Identities=18%  Similarity=0.192  Sum_probs=65.4

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||++.|+|.|. +|+.++..|...|++|+.+++..                              .++.+.++++
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t------------------------------~~L~~~~~~a  203 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT------------------------------QNLPELVKQA  203 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc------------------------------hhHHHHhccC
Confidence            4679999999999998 99999999999999999998621                              3577888999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |+||++++ .+   ++++.+    .+|+|+++|+++-
T Consensus       204 DIvI~AtG-~~---~~v~~~----~lk~gavViDvg~  232 (283)
T PRK14192        204 DIIVGAVG-KP---ELIKKD----WIKQGAVVVDAGF  232 (283)
T ss_pred             CEEEEccC-CC---CcCCHH----HcCCCCEEEEEEE
Confidence            99999996 33   367763    5789999999873

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.28  E-value=1.6e-06  Score=74.00  Aligned_cols=92  Identities=22%  Similarity=0.196  Sum_probs=63.4

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l  233 (269)
                      ++++|+|.|+||..+|++|...|.+|++-++..++......             ......-...+.++..+.+|||++++
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a-------------~~l~~~i~~~~~~dA~~~aDVVvLAV   68 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAA-------------AALGPLITGGSNEDAAALADVVVLAV   68 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHH-------------HhhccccccCChHHHHhcCCEEEEec
Confidence            58999999999999999999999999999766544221110             01111113457889999999999999


Q ss_pred             CCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          234 SLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       234 p~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |... .... .++... .+. |.++|++.
T Consensus        69 P~~a-~~~v-~~~l~~-~~~-~KIvID~t   93 (211)
T COG2085          69 PFEA-IPDV-LAELRD-ALG-GKIVIDAT   93 (211)
T ss_pred             cHHH-HHhH-HHHHHH-HhC-CeEEEecC
Confidence            9653 2222 233444 455 88888764

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.26  E-value=1e-06  Score=85.30  Aligned_cols=110  Identities=12%  Similarity=0.008  Sum_probs=68.5

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccc----cchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ----SSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      ++|||||.|.||..+|..|...|++|++||+++.........    ...+....+.............++.+++++||+|
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V   84 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI   84 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence            589999999999999999999999999999976542110000    0000000000000000011236788999999999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +.++|...+.+.-+-.+.-+ .++++++|....-|
T Consensus        85 ieavpe~~~vk~~l~~~l~~-~~~~~~iI~SsTsg  118 (495)
T PRK07531         85 QESVPERLDLKRRVLAEIDA-AARPDALIGSSTSG  118 (495)
T ss_pred             EEcCcCCHHHHHHHHHHHHh-hCCCCcEEEEcCCC
Confidence            99999776555433233434 67888877766554

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.26  E-value=6.1e-06  Score=73.97  Aligned_cols=78  Identities=22%  Similarity=0.227  Sum_probs=65.9

Q ss_pred             cccccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||+|.|||-| .+|+.+|.+|...|+.|+.+...                              ..++.+.+++|
T Consensus       152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~------------------------------t~~l~~~~~~A  201 (285)
T PRK14191        152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL------------------------------TKDLSFYTQNA  201 (285)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC------------------------------cHHHHHHHHhC
Confidence            467999999999999 99999999999999999998421                              13578999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |+|+++++    ..++++.++    .|+|+++|++|-
T Consensus       202 DIvV~AvG----~p~~i~~~~----vk~GavVIDvGi  230 (285)
T PRK14191        202 DIVCVGVG----KPDLIKASM----VKKGAVVVDIGI  230 (285)
T ss_pred             CEEEEecC----CCCcCCHHH----cCCCcEEEEeec
Confidence            99999996    336788754    589999999984

>PRK08507 prephenate dehydrogenase; Validated

Probab=98.25  E-value=1.4e-06  Score=77.97  Aligned_cols=88  Identities=19%  Similarity=0.238  Sum_probs=58.6

Q ss_pred             EEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          155 TVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      +|+|||+|.||..+|+.|+..|.  +|+++|++........        ..|    ...   ...+..++. ++|+|+++
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~--------~~g----~~~---~~~~~~~~~-~aD~Vila   65 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL--------ELG----LVD---EIVSFEELK-KCDVIFLA   65 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH--------HCC----CCc---ccCCHHHHh-cCCEEEEe
Confidence            79999999999999999997775  8999998654311100        000    000   123566655 59999999


Q ss_pred             cCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          233 LSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       233 lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +|.. .+...+.  .+. .+++++++++++
T Consensus        66 vp~~-~~~~~~~--~l~-~l~~~~iv~d~g   91 (275)
T PRK08507         66 IPVD-AIIEILP--KLL-DIKENTTIIDLG   91 (275)
T ss_pred             CcHH-HHHHHHH--HHh-ccCCCCEEEECc
Confidence            9954 3344432  344 378899999874

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.23  E-value=5.6e-06  Score=74.26  Aligned_cols=77  Identities=18%  Similarity=0.251  Sum_probs=65.3

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||++.|||.|. +|+.+|.+|...|+.|+.+...                              ..++.+..++|
T Consensus       159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~------------------------------T~~l~~~~~~A  208 (287)
T PRK14176        159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF------------------------------TDDLKKYTLDA  208 (287)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc------------------------------CCCHHHHHhhC
Confidence            4579999999999999 9999999999999999998731                              14688999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|++++--    .++++.+    .+|+|+++|++|
T Consensus       209 DIvv~AvG~----p~~i~~~----~vk~gavVIDvG  236 (287)
T PRK14176        209 DILVVATGV----KHLIKAD----MVKEGAVIFDVG  236 (287)
T ss_pred             CEEEEccCC----ccccCHH----HcCCCcEEEEec
Confidence            999998742    2577764    578999999998

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.23  E-value=4e-06  Score=74.93  Aligned_cols=77  Identities=14%  Similarity=0.182  Sum_probs=66.6

Q ss_pred             cccccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.|++|.|+|.+ .+|+.+|.+|..+|++|+.+..+                              ..++.+.+++|
T Consensus       147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~------------------------------t~~L~~~~~~A  196 (279)
T PRK14178        147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSK------------------------------TENLKAELRQA  196 (279)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecC------------------------------hhHHHHHHhhC
Confidence            457999999999999 99999999999999999998642                              14688999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|+.+++-.    +++++++    +|+|+++|++|
T Consensus       197 DIvI~Avgk~----~lv~~~~----vk~GavVIDVg  224 (279)
T PRK14178        197 DILVSAAGKA----GFITPDM----VKPGATVIDVG  224 (279)
T ss_pred             CEEEECCCcc----cccCHHH----cCCCcEEEEee
Confidence            9999999622    7888865    58999999998

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=98.21  E-value=3.1e-06  Score=79.35  Aligned_cols=104  Identities=23%  Similarity=0.334  Sum_probs=77.1

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      .+|.++++.|||+|.||+-+|+.|...|. +|++.+|+..+...-..             .........+++.+.+.++|
T Consensus       174 ~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~-------------~~~~~~~~l~el~~~l~~~D  240 (414)
T COG0373         174 GSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAK-------------KLGAEAVALEELLEALAEAD  240 (414)
T ss_pred             cccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH-------------HhCCeeecHHHHHHhhhhCC
Confidence            45899999999999999999999999995 79999999876321111             11112224578889999999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCC--cEEEEccCCCCcc
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFA--TYVVFMFQGHGVS  268 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~g--a~lIN~~RG~~vd  268 (269)
                      +|+++   |.....+++.+.+...++..  -++|++|=..-||
T Consensus       241 vViss---Tsa~~~ii~~~~ve~a~~~r~~~livDiavPRdie  280 (414)
T COG0373         241 VVISS---TSAPHPIITREMVERALKIRKRLLIVDIAVPRDVE  280 (414)
T ss_pred             EEEEe---cCCCccccCHHHHHHHHhcccCeEEEEecCCCCCC
Confidence            99999   55777899988877344432  4788887555444

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.21  E-value=1.3e-06  Score=78.83  Aligned_cols=112  Identities=15%  Similarity=0.113  Sum_probs=68.5

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcccccccc------chhhhccccccc-----cccccCCCCCHHHH
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQS------SALAVKNGIIDD-----LVDEKGCHEDIFEF  222 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~~~~l~el  222 (269)
                      ++|+|||.|.||..+|..+...|++|+.+|++...-.......      .......|.+..     .........++ +.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   82 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES   82 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence            5899999999999999999999999999998765421100000      000001111000     00001112345 56


Q ss_pred             HhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCc
Q 024297          223 ASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGV  267 (269)
Q Consensus       223 l~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~v  267 (269)
                      +++||+|+.++|...+.+.-+-++.-. .++++++|++..-|-.+
T Consensus        83 ~~~aDlVieav~e~~~~k~~~~~~l~~-~~~~~~il~S~tsg~~~  126 (291)
T PRK06035         83 LSDADFIVEAVPEKLDLKRKVFAELER-NVSPETIIASNTSGIMI  126 (291)
T ss_pred             hCCCCEEEEcCcCcHHHHHHHHHHHHh-hCCCCeEEEEcCCCCCH
Confidence            799999999999665433333233434 68899999988776543

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.20  E-value=1.8e-06  Score=81.89  Aligned_cols=102  Identities=21%  Similarity=0.289  Sum_probs=72.5

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      .+.+++|+|+|.|.||+.+++.|...|+ +|++++|+..+......             ..........++.+.+.++|+
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~-------------~~g~~~~~~~~~~~~l~~aDv  245 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAE-------------EFGGEAIPLDELPEALAEADI  245 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH-------------HcCCcEeeHHHHHHHhccCCE
Confidence            4789999999999999999999999998 89999997654210000             000011122456778899999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhC-----CCCcEEEEccCCCCcc
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSM-----FFATYVVFMFQGHGVS  268 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~m-----k~ga~lIN~~RG~~vd  268 (269)
                      |+.+.|   ....+++.+.++ .+     ..+.++|+++-..=||
T Consensus       246 VI~aT~---s~~~~i~~~~l~-~~~~~~~~~~~vviDla~Prdid  286 (423)
T PRK00045        246 VISSTG---APHPIIGKGMVE-RALKARRHRPLLLVDLAVPRDIE  286 (423)
T ss_pred             EEECCC---CCCcEEcHHHHH-HHHhhccCCCeEEEEeCCCCCCc
Confidence            999965   445788888887 43     3468999998654343

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=98.20  E-value=1.4e-06  Score=78.24  Aligned_cols=96  Identities=21%  Similarity=0.264  Sum_probs=63.3

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      -++|+|+|+|.||+.+|+.++..|..|.++++...........      .    -...++. ......+.+.++|+|+++
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~------~----lgv~d~~-~~~~~~~~~~~aD~Viva   71 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAAL------E----LGVIDEL-TVAGLAEAAAEADLVIVA   71 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHh------h----cCccccc-ccchhhhhcccCCEEEEe
Confidence            4689999999999999999999999876666544331110000      0    0011110 012236778899999999


Q ss_pred             cCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          233 LSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       233 lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +|-. .|..++.+ ... .+|+|+++.+++
T Consensus        72 vPi~-~~~~~l~~-l~~-~l~~g~iv~Dv~   98 (279)
T COG0287          72 VPIE-ATEEVLKE-LAP-HLKKGAIVTDVG   98 (279)
T ss_pred             ccHH-HHHHHHHH-hcc-cCCCCCEEEecc
Confidence            9954 55555544 444 689999999986

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.19  E-value=1.3e-05  Score=64.74  Aligned_cols=80  Identities=21%  Similarity=0.182  Sum_probs=66.4

Q ss_pred             cccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||+|.|+|- ..+|+.++.+|...|++|+.++.+.                              .++++.+++|
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t------------------------------~~l~~~v~~A   72 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT------------------------------IQLQSKVHDA   72 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC------------------------------cCHHHHHhhC
Confidence            56899999999995 5679999999999999999987421                              3688899999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      |+|+++.+..    ++|+.+    .+|+|+++|+++...
T Consensus        73 DIVvsAtg~~----~~i~~~----~ikpGa~Vidvg~~~  103 (140)
T cd05212          73 DVVVVGSPKP----EKVPTE----WIKPGATVINCSPTK  103 (140)
T ss_pred             CEEEEecCCC----CccCHH----HcCCCCEEEEcCCCc
Confidence            9999998733    678874    578999999998654

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.17  E-value=1.7e-06  Score=78.54  Aligned_cols=109  Identities=14%  Similarity=0.119  Sum_probs=64.1

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccc---cchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ---SSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      ++|+|||.|.||..+|..|...|++|+++|++..........   ..+...+.+.............++.+++++||+|+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi   84 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI   84 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence            589999999999999999999999999999865431110000   00000000000000000012356778899999999


Q ss_pred             EecCCCccc-cCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          231 CCLSLNKQT-VKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       231 ~~lp~t~~t-~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +++|...+. ..++ .+.-. .++++++++...-|
T Consensus        85 ~av~~~~~~~~~v~-~~l~~-~~~~~~ii~s~tsg  117 (311)
T PRK06130         85 EAVPEKLELKRDVF-ARLDG-LCDPDTIFATNTSG  117 (311)
T ss_pred             EeccCcHHHHHHHH-HHHHH-hCCCCcEEEECCCC
Confidence            999965432 3343 22323 56777777644333

>PRK07680 late competence protein ComER; Validated

Probab=98.16  E-value=2.3e-06  Score=76.37  Aligned_cols=91  Identities=20%  Similarity=0.275  Sum_probs=64.2

Q ss_pred             EEEEEecCchHHHHHHHhccCC----CEEEEEcCCCCCccccccccchhhhcccccccccccc-C--CCCCHHHHHhhCC
Q 024297          155 TVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-G--CHEDIFEFASKAD  227 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~ell~~aD  227 (269)
                      +|+|||+|+||+++++.|...|    .+|.+++|+..+...                 ..... +  ...+..+++.++|
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~-----------------~~~~~~g~~~~~~~~~~~~~aD   64 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYH-----------------IKERYPGIHVAKTIEEVISQSD   64 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHH-----------------HHHHcCCeEEECCHHHHHHhCC
Confidence            6999999999999999998877    379999987643111                 00110 1  1356778899999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +|++++| ......++. +... .++++.++|.++-|-
T Consensus        65 iVilav~-p~~~~~vl~-~l~~-~l~~~~~iis~~ag~   99 (273)
T PRK07680         65 LIFICVK-PLDIYPLLQ-KLAP-HLTDEHCLVSITSPI   99 (273)
T ss_pred             EEEEecC-HHHHHHHHH-HHHh-hcCCCCEEEEECCCC
Confidence            9999997 334445442 2444 677888999987553

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.15  E-value=1.7e-06  Score=77.87  Aligned_cols=107  Identities=15%  Similarity=0.078  Sum_probs=65.9

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccc---cchhhhccccccc------cccccCCCCCHHHHHh
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ---SSALAVKNGIIDD------LVDEKGCHEDIFEFAS  224 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------~~~~~~~~~~l~ell~  224 (269)
                      ++|+|||.|.||..+|..+...|.+|+.+|++...-......   ......+.+....      .........+++++++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~   83 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK   83 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence            589999999999999999999999999999875431110000   0000011111000      0000012367888899


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      .||+|+.++|...+.+.-+-++.-. .++++++|+..
T Consensus        84 ~aDlVieavpe~~~~k~~~~~~l~~-~~~~~~ii~sn  119 (287)
T PRK08293         84 DADLVIEAVPEDPEIKGDFYEELAK-VAPEKTIFATN  119 (287)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHh-hCCCCCEEEEC
Confidence            9999999999554443332233445 78889888543

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.15  E-value=2.5e-06  Score=77.77  Aligned_cols=102  Identities=20%  Similarity=0.265  Sum_probs=67.2

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      +.+++|+|+|.|.||+.+++.|+..| .+|++++|+..+......             .........+++.+.+.++|+|
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~-------------~~g~~~~~~~~~~~~l~~aDvV  242 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAK-------------ELGGNAVPLDELLELLNEADVV  242 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH-------------HcCCeEEeHHHHHHHHhcCCEE
Confidence            68999999999999999999999876 579999997654211000             0000111224577888999999


Q ss_pred             EEecCCCccccCcCCHHHHhhhC-CCCcEEEEccCCCCcc
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSM-FFATYVVFMFQGHGVS  268 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~m-k~ga~lIN~~RG~~vd  268 (269)
                      +.+.|.. .. ..+-+..++ .. +++.++|+++...-||
T Consensus       243 i~at~~~-~~-~~~~~~~~~-~~~~~~~~viDlavPrdi~  279 (311)
T cd05213         243 ISATGAP-HY-AKIVERAMK-KRSGKPRLIVDLAVPRDIE  279 (311)
T ss_pred             EECCCCC-ch-HHHHHHHHh-hCCCCCeEEEEeCCCCCCc
Confidence            9998843 33 111222333 22 3578999999755444

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.15  E-value=2.9e-06  Score=77.18  Aligned_cols=107  Identities=19%  Similarity=0.199  Sum_probs=72.5

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l  233 (269)
                      ++|+|||.|+.|.++|+.|...|.+|..|.|.++-.......+.+..|..|+  ..........++.++++.||+|++.+
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i--~lp~~l~at~Dl~~a~~~ad~iv~av   79 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGI--LLPPNLKATTDLAEALDGADIIVIAV   79 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCc--cCCcccccccCHHHHHhcCCEEEEEC
Confidence            5899999999999999999999999999998543211111111222223332  12222224578999999999999999


Q ss_pred             CCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          234 SLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       234 p~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      | +...+..+.. .-. .+++++.+|+++.|=
T Consensus        80 P-s~~~r~v~~~-l~~-~l~~~~~iv~~sKGi  108 (329)
T COG0240          80 P-SQALREVLRQ-LKP-LLLKDAIIVSATKGL  108 (329)
T ss_pred             C-hHHHHHHHHH-Hhh-hccCCCeEEEEeccc
Confidence            9 3344444333 223 678999999998873

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.13  E-value=5.3e-07  Score=71.57  Aligned_cols=91  Identities=22%  Similarity=0.215  Sum_probs=52.5

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEE-cCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV  228 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDv  228 (269)
                      ...+|+|||.|++|..+++.|...|..|..+ +|+.....                 .......  ...++.+++.++|+
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~-----------------~a~~~~~~~~~~~~~~~~~~aDl   71 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAE-----------------RAAAFIGAGAILDLEEILRDADL   71 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHH-----------------HHHC--TT-----TTGGGCC-SE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccc-----------------ccccccccccccccccccccCCE
Confidence            4568999999999999999999999998776 45432211                 1111111  33567788999999


Q ss_pred             EEEecCCCccccCcCCHHHHhhh--CCCCcEEEEcc
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKS--MFFATYVVFMF  262 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~--mk~ga~lIN~~  262 (269)
                      +++++|.. .-..+ -+ .+...  .++|.+++-++
T Consensus        72 v~iavpDd-aI~~v-a~-~La~~~~~~~g~iVvHtS  104 (127)
T PF10727_consen   72 VFIAVPDD-AIAEV-AE-QLAQYGAWRPGQIVVHTS  104 (127)
T ss_dssp             EEE-S-CC-HHHHH-HH-HHHCC--S-TT-EEEES-
T ss_pred             EEEEechH-HHHHH-HH-HHHHhccCCCCcEEEECC
Confidence            99999954 22222 12 23313  57898888775

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.13  E-value=1.9e-05  Score=70.64  Aligned_cols=77  Identities=18%  Similarity=0.197  Sum_probs=65.1

Q ss_pred             cccccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||++.|||-| -+|+.+|.+|...|+.|+.+...                              ..++.+..++|
T Consensus       152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~------------------------------T~~l~~~~~~A  201 (281)
T PRK14183        152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF------------------------------TKDLKAHTKKA  201 (281)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------------------------------CcCHHHHHhhC
Confidence            468999999999999 89999999999999999987521                              14688999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|++++.    ..++++.++    .|+|+++|++|
T Consensus       202 DIvV~AvG----kp~~i~~~~----vk~gavvIDvG  229 (281)
T PRK14183        202 DIVIVGVG----KPNLITEDM----VKEGAIVIDIG  229 (281)
T ss_pred             CEEEEecC----cccccCHHH----cCCCcEEEEee
Confidence            99999986    236788754    67899999998

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=98.12  E-value=1.9e-05  Score=66.91  Aligned_cols=95  Identities=18%  Similarity=0.188  Sum_probs=66.9

Q ss_pred             ccccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCC----CCCHHH
Q 024297          147 TGETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC----HEDIFE  221 (269)
Q Consensus       147 ~~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~e  221 (269)
                      .+.++.||++.|||-+. +|+.+|.+|...|+.|+.++.+.......          .+   ..-.+.-.    ..++.+
T Consensus        56 ~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~----------~~---~~~hs~t~~~~~~~~l~~  122 (197)
T cd01079          56 YGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTR----------GE---SIRHEKHHVTDEEAMTLD  122 (197)
T ss_pred             cCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCccccccc----------cc---ccccccccccchhhHHHH
Confidence            46789999999999775 69999999999999999997533210000          00   00000000    113889


Q ss_pred             HHhhCCEEEEecCCCccccCc-CCHHHHhhhCCCCcEEEEcc
Q 024297          222 FASKADVVVCCLSLNKQTVKL-CSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       222 ll~~aDvvv~~lp~t~~t~~l-i~~~~l~~~mk~ga~lIN~~  262 (269)
                      .+++||+||++++-    .++ +..+    ..|+|+++||+|
T Consensus       123 ~~~~ADIVIsAvG~----~~~~i~~d----~ik~GavVIDVG  156 (197)
T cd01079         123 CLSQSDVVITGVPS----PNYKVPTE----LLKDGAICINFA  156 (197)
T ss_pred             HhhhCCEEEEccCC----CCCccCHH----HcCCCcEEEEcC
Confidence            99999999999983    356 7775    467999999998

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.10  E-value=3e-06  Score=76.39  Aligned_cols=109  Identities=13%  Similarity=0.089  Sum_probs=70.8

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcccccc---ccchhhhccccccc-----cccccCCCCCHHHHHhh
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC---QSSALAVKNGIIDD-----LVDEKGCHEDIFEFASK  225 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~~  225 (269)
                      ++|||||.|.||..+|..+...|++|+.||++++.......   ...+.....|....     .........++ +.++.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~   84 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD   84 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence            48999999999999999999999999999998765221000   00000111121100     00011123566 55899


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhC-CCCcEEEEccCC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSM-FFATYVVFMFQG  264 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~m-k~ga~lIN~~RG  264 (269)
                      ||+|+-++|.+.+.+.-+-. .+++.+ +++++|++..-+
T Consensus        85 ~d~ViEav~E~~~~K~~l~~-~l~~~~~~~~~il~snTS~  123 (286)
T PRK07819         85 RQLVIEAVVEDEAVKTEIFA-ELDKVVTDPDAVLASNTSS  123 (286)
T ss_pred             CCEEEEecccCHHHHHHHHH-HHHHhhCCCCcEEEECCCC
Confidence            99999999988887775555 455145 899999887654

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.10  E-value=1.9e-05  Score=58.13  Aligned_cols=67  Identities=27%  Similarity=0.371  Sum_probs=54.6

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      ..+.+++++|+|.|.+|+.+++.+... +.+|.+++|                                          |
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------------------------d   56 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------------------------D   56 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------------------------C
Confidence            568999999999999999999999988 567777641                                          9


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +++.+.+..    +++.++..+ .+++++++++++
T Consensus        57 i~i~~~~~~----~~~~~~~~~-~~~~~~~v~~~a   86 (86)
T cd05191          57 ILVTATPAG----VPVLEEATA-KINEGAVVIDLA   86 (86)
T ss_pred             EEEEcCCCC----CCchHHHHH-hcCCCCEEEecC
Confidence            999997642    556665677 899999999864

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.09  E-value=2.6e-06  Score=73.50  Aligned_cols=123  Identities=15%  Similarity=0.114  Sum_probs=78.4

Q ss_pred             chHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHh--ccCCCEEEE-EcCCCCCcc
Q 024297          114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL--RPFGVKIIA-TKRSWASHS  190 (269)
Q Consensus       114 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l--~~~G~~V~~-~~~~~~~~~  190 (269)
                      .+.++|.+..++...|++..         |.       ..++|+|+|+|.+|+.+++.+  ...|+++.+ +|+++.+..
T Consensus        61 ~~~~gy~v~~l~~~~~~~l~---------~~-------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~  124 (213)
T PRK05472         61 KRGVGYNVEELLEFIEKILG---------LD-------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIG  124 (213)
T ss_pred             CCCCCeeHHHHHHHHHHHhC---------CC-------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcC
Confidence            44567888888888888742         11       346899999999999999863  467998776 555432210


Q ss_pred             ccccccchhhhccccccccccccCCCCCHHHHHhh--CCEEEEecCCCccc---cCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          191 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVVCCLSLNKQT---VKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDvvv~~lp~t~~t---~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      ...              .... .....++.+++++  .|++++++|.+...   ..+....... -+...++.+|+.||.
T Consensus       125 ~~i--------------~g~~-v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~-il~~~p~~~~v~~~~  188 (213)
T PRK05472        125 TKI--------------GGIP-VYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKG-ILNFAPVRLSVPEDV  188 (213)
T ss_pred             CEe--------------CCeE-EcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCE-EeecCceeecCCCCC
Confidence            000              0000 1133568888875  99999999976541   2222222233 456667888999998


Q ss_pred             Ccc
Q 024297          266 GVS  268 (269)
Q Consensus       266 ~vd  268 (269)
                      +|+
T Consensus       189 ~v~  191 (213)
T PRK05472        189 IVR  191 (213)
T ss_pred             EEE
Confidence            775

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=98.09  E-value=5e-06  Score=74.56  Aligned_cols=102  Identities=20%  Similarity=0.149  Sum_probs=67.6

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhcccccccccccc--CCC-CCHHHHHh
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--GCH-EDIFEFAS  224 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~l~ell~  224 (269)
                      .++.++++.|+|.|.+|+++++.|...| .+|++++|+.++......              .....  ... .++.+.+.
T Consensus       119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~--------------~~~~~~~~~~~~~~~~~~~  184 (278)
T PRK00258        119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAK--------------LFGALGKAELDLELQEELA  184 (278)
T ss_pred             CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH--------------Hhhhccceeecccchhccc
Confidence            4688999999999999999999999999 689999998654211100              00000  001 23456778


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      ++|+||++.|.......-.+.-.+. .++++++++++.-.+
T Consensus       185 ~~DivInaTp~g~~~~~~~~~~~~~-~l~~~~~v~DivY~P  224 (278)
T PRK00258        185 DFDLIINATSAGMSGELPLPPLPLS-LLRPGTIVYDMIYGP  224 (278)
T ss_pred             cCCEEEECCcCCCCCCCCCCCCCHH-HcCCCCEEEEeecCC
Confidence            9999999998664321111111235 678889998876443

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=98.08  E-value=4.2e-06  Score=84.63  Aligned_cols=93  Identities=27%  Similarity=0.301  Sum_probs=65.2

Q ss_pred             CEEEEEecCchHHHHHHHhccCC--CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      ++|+|||+|.||.++++.++..|  .+|+++|++..+.....        ..|    ..  .....++.+++.++|+|++
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~--------~~g----~~--~~~~~~~~~~~~~aDvVil   69 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV--------SLG----VI--DRGEEDLAEAVSGADVIVL   69 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH--------HCC----CC--CcccCCHHHHhcCCCEEEE
Confidence            68999999999999999999888  58999998765421100        001    00  0123567888999999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ++|.. .+..++. +... .++++.++++++.
T Consensus        70 avp~~-~~~~vl~-~l~~-~~~~~~ii~d~~s   98 (735)
T PRK14806         70 AVPVL-AMEKVLA-DLKP-LLSEHAIVTDVGS   98 (735)
T ss_pred             CCCHH-HHHHHHH-HHHH-hcCCCcEEEEcCC
Confidence            99954 4444442 2334 6788999998875

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.07  E-value=5.6e-06  Score=78.64  Aligned_cols=97  Identities=15%  Similarity=0.226  Sum_probs=64.0

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccc-------cccccccC--CCCCHHHHHh
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII-------DDLVDEKG--CHEDIFEFAS  224 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~~l~ell~  224 (269)
                      .+|||||+|.||..+|..|.. |++|++||++..+-...         ..|..       ++.. ..+  ...+-.+.++
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l---------~~G~~~~~e~~~~~l~-~~g~l~~t~~~~~~~   75 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILEL---------KNGVDVNLETTEEELR-EARYLKFTSEIEKIK   75 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHH---------HCcCCCCCCCCHHHHH-hhCCeeEEeCHHHHc
Confidence            689999999999999999877 79999999987652211         11110       0000 001  1122235689


Q ss_pred             hCCEEEEecCCCc------cccCcCC--HHHHhhhCCCCcEEEEcc
Q 024297          225 KADVVVCCLSLNK------QTVKLCS--SSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       225 ~aDvvv~~lp~t~------~t~~li~--~~~l~~~mk~ga~lIN~~  262 (269)
                      +||++++|+|...      +...+..  +...+ .+++|.++|+.+
T Consensus        76 ~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~-~l~~g~lVI~~S  120 (425)
T PRK15182         76 ECNFYIITVPTPINTYKQPDLTPLIKASETVGT-VLNRGDIVVYES  120 (425)
T ss_pred             CCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHH-hcCCCCEEEEec
Confidence            9999999999442      2244442  33456 899999999865

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.06  E-value=7.8e-06  Score=72.68  Aligned_cols=90  Identities=27%  Similarity=0.283  Sum_probs=67.6

Q ss_pred             CEEEEEecCchHHHHHHHhccCC----CEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  227 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  227 (269)
                      ++|||||+|+||++++..|...|    .+|++.+|+.++..                 .....++  ...+..++..++|
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~-----------------~l~~~~g~~~~~~~~~~~~~ad   64 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA-----------------ALAAEYGVVTTTDNQEAVEEAD   64 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH-----------------HHHHHcCCcccCcHHHHHhhCC
Confidence            58999999999999999999888    58999998876531                 1222332  2467789999999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCC---CCcEEEEccCCCCc
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMF---FATYVVFMFQGHGV  267 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk---~ga~lIN~~RG~~v  267 (269)
                      +|++++..  +    .=.+.++ .++   ++.++|.++-|-.+
T Consensus        65 vv~LavKP--q----~~~~vl~-~l~~~~~~~lvISiaAGv~~  100 (266)
T COG0345          65 VVFLAVKP--Q----DLEEVLS-KLKPLTKDKLVISIAAGVSI  100 (266)
T ss_pred             EEEEEeCh--H----hHHHHHH-HhhcccCCCEEEEEeCCCCH
Confidence            99999952  2    2245666 666   68899999877544

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.05  E-value=4.3e-06  Score=75.00  Aligned_cols=94  Identities=19%  Similarity=0.215  Sum_probs=63.5

Q ss_pred             CEEEEEecCchHHHHHHHhccCC----CEEEEEcCCCCCccccccccchhhhcccccccccccc-C--CCCCHHHHHhhC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-G--CHEDIFEFASKA  226 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~ell~~a  226 (269)
                      .+|+|||+|+||.++++.|...|    .+|.+++++.......                ..... .  ...+..+++.++
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~----------------l~~~~~~~~~~~~~~e~~~~a   65 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQ----------------LYDKYPTVELADNEAEIFTKC   65 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHH----------------HHHHcCCeEEeCCHHHHHhhC
Confidence            47999999999999999998777    6899998754221100                00111 0  125677889999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      |+|++++| ......++. +... .++++..+|.+.=|--
T Consensus        66 DvVilavp-p~~~~~vl~-~l~~-~l~~~~~ivS~~aGi~  102 (277)
T PRK06928         66 DHSFICVP-PLAVLPLLK-DCAP-VLTPDRHVVSIAAGVS  102 (277)
T ss_pred             CEEEEecC-HHHHHHHHH-HHHh-hcCCCCEEEEECCCCC
Confidence            99999999 333444332 2333 5677888998877643

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.05  E-value=4e-06  Score=76.20  Aligned_cols=110  Identities=13%  Similarity=0.030  Sum_probs=64.1

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccc---cchhhhcccccc-----ccccccCCCCCHHHHHhh
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ---SSALAVKNGIID-----DLVDEKGCHEDIFEFASK  225 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~~~l~ell~~  225 (269)
                      ++|+|||.|.||..+|..|...|++|++||++..........   ..+.....|.+.     ..........++.+++++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            479999999999999999999999999999876431110000   000000011100     000000123578889999


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      ||+|+.++|...+...-+-.+ +....++..++.....+
T Consensus        83 ad~Vi~avpe~~~~k~~~~~~-l~~~~~~~~ii~ssts~  120 (308)
T PRK06129         83 ADYVQESAPENLELKRALFAE-LDALAPPHAILASSTSA  120 (308)
T ss_pred             CCEEEECCcCCHHHHHHHHHH-HHHhCCCcceEEEeCCC
Confidence            999999999664433322222 34145566666544443

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.02  E-value=4.4e-05  Score=66.53  Aligned_cols=99  Identities=17%  Similarity=0.223  Sum_probs=70.8

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCE---EEEEcCCC----CCccccccccchhhhcccccccccccc---CCCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVK---IIATKRSW----ASHSQVSCQSSALAVKNGIIDDLVDEK---GCHE  217 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~---V~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  217 (269)
                      +..+.++++.|+|.|.+|+.+|+.|...|++   |+.+||+.    .+.........          ......   ....
T Consensus        20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~----------~la~~~~~~~~~~   89 (226)
T cd05311          20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKN----------EIAKETNPEKTGG   89 (226)
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHH----------HHHHHhccCcccC
Confidence            4578999999999999999999999999984   99999984    22100000000          011111   0113


Q ss_pred             CHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          218 DIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       218 ~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ++.+.++++|+||.+.|     .++++.+.++ .|.++.++..++
T Consensus        90 ~l~~~l~~~dvlIgaT~-----~G~~~~~~l~-~m~~~~ivf~ls  128 (226)
T cd05311          90 TLKEALKGADVFIGVSR-----PGVVKKEMIK-KMAKDPIVFALA  128 (226)
T ss_pred             CHHHHHhcCCEEEeCCC-----CCCCCHHHHH-hhCCCCEEEEeC
Confidence            67788899999999975     4788888999 999998887766

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.02  E-value=6.9e-06  Score=73.50  Aligned_cols=92  Identities=20%  Similarity=0.194  Sum_probs=62.5

Q ss_pred             cCCEEEEEecCchHHHHHHHhcc--CCCEEE-EEcCCCCCccccccccchhhhccccccccccccC---CCCCHHHHHhh
Q 024297          152 LGKTVFILGFGNIGVELAKRLRP--FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASK  225 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~--~G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~  225 (269)
                      ...+|||||+|.||+.+++.+..  .+++|. ++++++.+..                 .....++   .+.++++++.+
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~-----------------~~a~~~g~~~~~~~~eell~~   67 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHA-----------------DFIWGLRRPPPVVPLDQLATH   67 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHH-----------------HHHHhcCCCcccCCHHHHhcC
Confidence            34799999999999999999885  488876 5676543311                 1111111   34689999999


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      +|+|++|.|...   +   .+.....++.|.-+++.+.|.+
T Consensus        68 ~D~Vvi~tp~~~---h---~e~~~~aL~aGk~Vi~~s~gal  102 (271)
T PRK13302         68 ADIVVEAAPASV---L---RAIVEPVLAAGKKAIVLSVGAL  102 (271)
T ss_pred             CCEEEECCCcHH---H---HHHHHHHHHcCCcEEEecchhH
Confidence            999999998432   1   2222226677777777777653

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=98.01  E-value=1.1e-05  Score=76.36  Aligned_cols=101  Identities=12%  Similarity=0.233  Sum_probs=71.3

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccc-cccCCCCCHHHHHhhC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFASKA  226 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~a  226 (269)
                      ..+.|+++.|||.|.+|+.+++.|...|+ +|++++|+..+...-.             .... ......+++.+++.++
T Consensus       177 ~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La-------------~~~~~~~~~~~~~l~~~l~~a  243 (414)
T PRK13940        177 DNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKIT-------------SAFRNASAHYLSELPQLIKKA  243 (414)
T ss_pred             cCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-------------HHhcCCeEecHHHHHHHhccC
Confidence            45889999999999999999999999996 7999999865421100             0000 0111335678889999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVS  268 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vd  268 (269)
                      |+|+++.+   ....+|+.+...   .+.-++|+.|=..=||
T Consensus       244 DiVI~aT~---a~~~vi~~~~~~---~~~~~~iDLavPRdid  279 (414)
T PRK13940        244 DIIIAAVN---VLEYIVTCKYVG---DKPRVFIDISIPQALD  279 (414)
T ss_pred             CEEEECcC---CCCeeECHHHhC---CCCeEEEEeCCCCCCC
Confidence            99999965   455788876654   2346888887554444

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.01  E-value=4.3e-06  Score=81.10  Aligned_cols=108  Identities=14%  Similarity=0.126  Sum_probs=69.6

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccc---cccchhhhccccccc-----cccccCCCCCHHHHHhh
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS---CQSSALAVKNGIIDD-----LVDEKGCHEDIFEFASK  225 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~~  225 (269)
                      ++|||||.|.||..+|+.+...|++|+.+|++.+......   ....+.....|.+..     .........++++ +.+
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~   86 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD   86 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence            6899999999999999999999999999999876421100   000000011121000     0000112246655 569


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEE-EccC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVV-FMFQ  263 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lI-N~~R  263 (269)
                      ||+|+-++|.+.+.+..+-.+.-. .++++++|. |++-
T Consensus        87 aDlViEav~E~~~vK~~vf~~l~~-~~~~~ailasntSt  124 (507)
T PRK08268         87 CDLVVEAIVERLDVKQALFAQLEA-IVSPDCILATNTSS  124 (507)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHh-hCCCCcEEEECCCC
Confidence            999999999888877765554334 678999994 8863

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.00  E-value=1.4e-05  Score=67.68  Aligned_cols=112  Identities=21%  Similarity=0.140  Sum_probs=69.1

Q ss_pred             cccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +..+.++++.|+|. |.+|+.+++.|...|.+|+.++|+..+... ...  .+.-..+. .-........+++.+.++++
T Consensus        23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~-l~~--~l~~~~~~-~~~~~~~~~~~~~~~~~~~~   98 (194)
T cd01078          23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQK-AAD--SLRARFGE-GVGAVETSDDAARAAAIKGA   98 (194)
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH-HHH--HHHhhcCC-cEEEeeCCCHHHHHHHHhcC
Confidence            45688999999995 999999999999999999999987543111 000  00000000 00000011224556888999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVS  268 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vd  268 (269)
                      |+|+.+.|....+  .+.  .-. ..+++.+++++.+.+-++
T Consensus        99 diVi~at~~g~~~--~~~--~~~-~~~~~~vv~D~~~~~~~~  135 (194)
T cd01078          99 DVVFAAGAAGVEL--LEK--LAW-APKPLAVAADVNAVPPVG  135 (194)
T ss_pred             CEEEECCCCCcee--chh--hhc-ccCceeEEEEccCCCCCC
Confidence            9999998855431  111  111 345688999988776543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=97.98  E-value=6e-06  Score=79.99  Aligned_cols=107  Identities=15%  Similarity=0.102  Sum_probs=68.7

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccc---cccchhhhcccccc-----ccccccCCCCCHHHHHhh
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS---CQSSALAVKNGIID-----DLVDEKGCHEDIFEFASK  225 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~l~ell~~  225 (269)
                      ++|||||.|.||..+|+.+...|++|+.||++...-....   ....+..+..|...     ..........++++ +++
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~   84 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD   84 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence            6899999999999999999999999999999865421100   00000111122110     00001112356755 579


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEE-Ecc
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVV-FMF  262 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lI-N~~  262 (269)
                      ||+|+.++|...+.+.-+-.+.-. .++++++|. |++
T Consensus        85 aDlVIEav~E~~~vK~~vf~~l~~-~~~~~~IlasnTS  121 (503)
T TIGR02279        85 AGLVIEAIVENLEVKKALFAQLEE-LCPADTIIASNTS  121 (503)
T ss_pred             CCEEEEcCcCcHHHHHHHHHHHHh-hCCCCeEEEECCC
Confidence            999999999887776655454444 788888887 665

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.97  E-value=8.1e-06  Score=73.20  Aligned_cols=109  Identities=17%  Similarity=0.108  Sum_probs=66.3

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcccccc---ccchhhhccccccc-----cccccCCCCCHHHHHhh
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC---QSSALAVKNGIIDD-----LVDEKGCHEDIFEFASK  225 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~~  225 (269)
                      ++|+|||.|.||..+|..+...|.+|+++|+++........   .........|.+..     .........+++ .+++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~   82 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD   82 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            58999999999999999999999999999987654210000   00000001110000     000011124554 4799


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      ||+|+.++|.+.+.+.-+-++..+ .++++++++...-|
T Consensus        83 aDlVi~av~e~~~~k~~~~~~l~~-~~~~~~il~s~ts~  120 (282)
T PRK05808         83 ADLVIEAATENMDLKKKIFAQLDE-IAKPEAILATNTSS  120 (282)
T ss_pred             CCeeeecccccHHHHHHHHHHHHh-hCCCCcEEEECCCC
Confidence            999999998766655333333545 78999998665444

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.97  E-value=3.6e-05  Score=68.48  Aligned_cols=77  Identities=23%  Similarity=0.285  Sum_probs=65.4

Q ss_pred             cccccCCEEEEEecCch-HHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.|+++.|||-|+| |+.++.+|...++.|+++...                              ..++.+..++|
T Consensus       151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~------------------------------T~~l~~~~k~A  200 (283)
T COG0190         151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSR------------------------------TKDLASITKNA  200 (283)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCC------------------------------CCCHHHHhhhC
Confidence            46899999999998875 999999999999999998742                              14788999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|++++-    -.+++..+    ..|+|+++|++|
T Consensus       201 DIvv~AvG----~p~~i~~d----~vk~gavVIDVG  228 (283)
T COG0190         201 DIVVVAVG----KPHFIKAD----MVKPGAVVIDVG  228 (283)
T ss_pred             CEEEEecC----Cccccccc----cccCCCEEEecC
Confidence            99999985    33788864    578999999997

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.94  E-value=5.2e-05  Score=67.96  Aligned_cols=77  Identities=13%  Similarity=0.204  Sum_probs=65.0

Q ss_pred             cccccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||++.|||-+ -+|+.++.+|...|+.|+.+...                              ..++.+..++|
T Consensus       154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~------------------------------T~~l~~~~~~A  203 (284)
T PRK14177        154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK------------------------------TQNLPSIVRQA  203 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence            468999999999965 57999999999999999998632                              14688999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|++++.    ..++++.+    ..|+|+++|++|
T Consensus       204 DIvIsAvG----k~~~i~~~----~ik~gavVIDvG  231 (284)
T PRK14177        204 DIIVGAVG----KPEFIKAD----WISEGAVLLDAG  231 (284)
T ss_pred             CEEEEeCC----CcCccCHH----HcCCCCEEEEec
Confidence            99999987    23678875    467999999998

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.94  E-value=1.1e-05  Score=71.52  Aligned_cols=89  Identities=28%  Similarity=0.319  Sum_probs=58.4

Q ss_pred             CEEEEEecCchHHHHHHHhccCC---CEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFG---VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV  228 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDv  228 (269)
                      ++|+|||+|.||+.+++.+...|   .+|.+++|+..+...                 ....++  ...+..+++.++|+
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~-----------------~~~~~g~~~~~~~~~~~~~adv   65 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAA-----------------LAEEYGVRAATDNQEAAQEADV   65 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHH-----------------HHHhcCCeecCChHHHHhcCCE
Confidence            57999999999999999999888   789999987643110                 111111  23567788899999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      |++++|.. ..+.++.. ... .+  +..+|++.=|
T Consensus        66 Vil~v~~~-~~~~v~~~-l~~-~~--~~~vvs~~~g   96 (267)
T PRK11880         66 VVLAVKPQ-VMEEVLSE-LKG-QL--DKLVVSIAAG   96 (267)
T ss_pred             EEEEcCHH-HHHHHHHH-HHh-hc--CCEEEEecCC
Confidence            99999833 33333222 222 22  4567766544

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=97.94  E-value=1.2e-05  Score=72.80  Aligned_cols=83  Identities=14%  Similarity=0.115  Sum_probs=62.4

Q ss_pred             HHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEEecCCCccccCc
Q 024297          165 GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTVKL  242 (269)
Q Consensus       165 G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~~lp~t~~t~~l  242 (269)
                      |+.+|++|...|++|++||++........             .+.+.+.+  ..++..++++++|+|++++|..++++.+
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~-------------~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eV   98 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDL-------------WKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSI   98 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhh-------------hHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHH
Confidence            78999999999999999998764311000             00111112  3357889999999999999988778888


Q ss_pred             CCHHHHhhhCCCCcEEEEcc
Q 024297          243 CSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       243 i~~~~l~~~mk~ga~lIN~~  262 (269)
                      + ...+. .+++|+++||++
T Consensus        99 l-~GLaa-~L~~GaIVID~S  116 (341)
T TIGR01724        99 A-RTIIE-HVPENAVICNTC  116 (341)
T ss_pred             H-HHHHh-cCCCCCEEEECC
Confidence            7 45788 899999999986

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.93  E-value=6.1e-06  Score=73.05  Aligned_cols=89  Identities=15%  Similarity=0.146  Sum_probs=60.7

Q ss_pred             EEEEEecCchHHHHHHHhccCCC---EEEEEcCCCCCccccccccchhhhcccccccccccc---CCCCCHHHHHhhCCE
Q 024297          155 TVFILGFGNIGVELAKRLRPFGV---KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK---GCHEDIFEFASKADV  228 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~---~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ell~~aDv  228 (269)
                      +|||||+|+||+.+++.|...|.   .|.+++|+.++..                 ......   ....+..+++.++|+
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~-----------------~l~~~~~~~~~~~~~~~~~~~aDv   64 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAA-----------------RLAERFPKVRIAKDNQAVVDRSDV   64 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHH-----------------HHHHHcCCceEeCCHHHHHHhCCE
Confidence            79999999999999999987774   3578887654311                 111111   123578888999999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      |++++| ......++..  +.  ++++.++|.+.=|-
T Consensus        65 Vilav~-p~~~~~vl~~--l~--~~~~~~vis~~ag~   96 (258)
T PRK06476         65 VFLAVR-PQIAEEVLRA--LR--FRPGQTVISVIAAT   96 (258)
T ss_pred             EEEEeC-HHHHHHHHHH--hc--cCCCCEEEEECCCC
Confidence            999998 3344444322  22  46788999887543

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.93  E-value=1.7e-05  Score=72.11  Aligned_cols=90  Identities=14%  Similarity=0.100  Sum_probs=65.6

Q ss_pred             ccCCEEEEEecCchHHHHHHHhcc-CCC-EEEEEcCCCCCccccccccchhhhccccccccccccC---CCCCHHHHHhh
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASK  225 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~  225 (269)
                      ...++++|+|.|.+|+..++.+.. ++. +|.+|+|+..+...-..              .....+   ...+.++++.+
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~--------------~~~~~~~~~~~~~~~~av~~  188 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCA--------------HARALGPTAEPLDGEAIPEA  188 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH--------------HHHhcCCeeEECCHHHHhhc
Confidence            356799999999999999998864 665 79999998655211110              000000   13578899999


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +|+|+++.|   .+..++..     .+|||+.++++|
T Consensus       189 aDiVitaT~---s~~Pl~~~-----~~~~g~hi~~iG  217 (304)
T PRK07340        189 VDLVVTATT---SRTPVYPE-----AARAGRLVVAVG  217 (304)
T ss_pred             CCEEEEccC---CCCceeCc-----cCCCCCEEEecC
Confidence            999999976   44578765     468999999988

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.92  E-value=6.1e-05  Score=67.52  Aligned_cols=77  Identities=17%  Similarity=0.264  Sum_probs=64.7

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||++.|||-+. +|+.+|.+|...|+.|+.+...                              ..++.+..++|
T Consensus       151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~------------------------------T~~l~~~~~~A  200 (282)
T PRK14169        151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK------------------------------TRNLKQLTKEA  200 (282)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCC------------------------------CCCHHHHHhhC
Confidence            4679999999999765 6999999999999999998531                              14688999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+||++++-    .++++.+    ..|+|+++|++|
T Consensus       201 DIvI~AvG~----p~~i~~~----~vk~GavVIDvG  228 (282)
T PRK14169        201 DILVVAVGV----PHFIGAD----AVKPGAVVIDVG  228 (282)
T ss_pred             CEEEEccCC----cCccCHH----HcCCCcEEEEee
Confidence            999999973    3678885    467899999998

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.92  E-value=7.8e-05  Score=67.15  Aligned_cols=77  Identities=19%  Similarity=0.292  Sum_probs=64.7

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||++.|||-+. +|+.++.+|...|+.|+.+...                              ..++.+.+++|
T Consensus       155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~------------------------------T~~l~~~~~~A  204 (294)
T PRK14187        155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSA------------------------------TRDLADYCSKA  204 (294)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence            4679999999999665 7999999999999999998631                              14688999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+||+++.-    .++++.++    .|+|+++|++|
T Consensus       205 DIvVsAvGk----p~~i~~~~----ik~gaiVIDVG  232 (294)
T PRK14187        205 DILVAAVGI----PNFVKYSW----IKKGAIVIDVG  232 (294)
T ss_pred             CEEEEccCC----cCccCHHH----cCCCCEEEEec
Confidence            999999973    36788754    67899999997

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.92  E-value=4.6e-05  Score=70.01  Aligned_cols=96  Identities=14%  Similarity=0.081  Sum_probs=67.6

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      .++.+++|.|||.|.||+.+|+.|...|+ +|++++|+....                  .. ..  ...+..+++.++|
T Consensus       170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~------------------~~-~~--~~~~~~~~~~~~D  228 (338)
T PRK00676        170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL------------------PY-RT--VVREELSFQDPYD  228 (338)
T ss_pred             CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc------------------ch-hh--hhhhhhhcccCCC
Confidence            46899999999999999999999999996 699999986431                  00 00  0001125567999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCc
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGV  267 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~v  267 (269)
                      ||+++...|......++.+.++ ..++ -+||+.+=..=|
T Consensus       229 vVIs~t~~Tas~~p~i~~~~~~-~~~~-r~~iDLAvPRdI  266 (338)
T PRK00676        229 VIFFGSSESAYAFPHLSWESLA-DIPD-RIVFDFNVPRTF  266 (338)
T ss_pred             EEEEcCCcCCCCCceeeHHHHh-hccC-cEEEEecCCCCC
Confidence            9999744344555788888887 5443 388888744433

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.92  E-value=3.4e-05  Score=71.03  Aligned_cols=97  Identities=23%  Similarity=0.208  Sum_probs=70.2

Q ss_pred             cccccCCEEEEEec-CchHHHHHHHhcc-CCC-EEEEEcCCCCCccccccccchhhhcccccccccccc--CCCCCHHHH
Q 024297          148 GETLLGKTVFILGF-GNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--GCHEDIFEF  222 (269)
Q Consensus       148 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~el  222 (269)
                      +.++.+++|.|+|. |.||+.+++.|.. .|. +|+.++|+..+. ..                ...+.  ....++++.
T Consensus       150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl-~~----------------La~el~~~~i~~l~~~  212 (340)
T PRK14982        150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERL-QE----------------LQAELGGGKILSLEEA  212 (340)
T ss_pred             ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHH-HH----------------HHHHhccccHHhHHHH
Confidence            45799999999998 8999999999974 564 899999875431 11                11111  123468899


Q ss_pred             HhhCCEEEEecCCCccccC-cCCHHHHhhhCCCCcEEEEccCCCCcc
Q 024297          223 ASKADVVVCCLSLNKQTVK-LCSSSLSSKSMFFATYVVFMFQGHGVS  268 (269)
Q Consensus       223 l~~aDvvv~~lp~t~~t~~-li~~~~l~~~mk~ga~lIN~~RG~~vd  268 (269)
                      +.++|+|+.+..   .... +++.+    .++++.++|++|+..=||
T Consensus       213 l~~aDiVv~~ts---~~~~~~I~~~----~l~~~~~viDiAvPRDVd  252 (340)
T PRK14982        213 LPEADIVVWVAS---MPKGVEIDPE----TLKKPCLMIDGGYPKNLD  252 (340)
T ss_pred             HccCCEEEECCc---CCcCCcCCHH----HhCCCeEEEEecCCCCCC
Confidence            999998887753   3335 37774    467899999999876554

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.91  E-value=6.4e-05  Score=67.24  Aligned_cols=77  Identities=19%  Similarity=0.253  Sum_probs=64.7

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||++.|||-+. +|+.++.+|...|+.|+.+...                              ..++.+..++|
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~------------------------------T~~l~~~~~~A  202 (278)
T PRK14172        153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK------------------------------TKNLKEVCKKA  202 (278)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence            3579999999999765 7999999999999999998631                              14688999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|++++.-    .++++.++    .|+|+++|++|
T Consensus       203 DIvIsAvGk----p~~i~~~~----ik~gavVIDvG  230 (278)
T PRK14172        203 DILVVAIGR----PKFIDEEY----VKEGAIVIDVG  230 (278)
T ss_pred             CEEEEcCCC----cCccCHHH----cCCCcEEEEee
Confidence            999999973    36888854    67999999996

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.91  E-value=6.3e-05  Score=67.88  Aligned_cols=77  Identities=18%  Similarity=0.197  Sum_probs=64.8

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||++.|||-+. +|+.++.+|...|+.|+.+...                              ..++++..++|
T Consensus       153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~------------------------------T~~l~~~~~~A  202 (297)
T PRK14186        153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR------------------------------TQDLASITREA  202 (297)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence            4689999999999765 7999999999999999998531                              14688999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+||++++-    .++++.+    ..|+|+++|++|
T Consensus       203 DIvIsAvGk----p~~i~~~----~ik~gavVIDvG  230 (297)
T PRK14186        203 DILVAAAGR----PNLIGAE----MVKPGAVVVDVG  230 (297)
T ss_pred             CEEEEccCC----cCccCHH----HcCCCCEEEEec
Confidence            999999972    2688874    467999999998

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.91  E-value=6.6e-05  Score=67.45  Aligned_cols=79  Identities=23%  Similarity=0.236  Sum_probs=65.4

Q ss_pred             cccccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||++.|||-+ .+|+.++.+|...|+.|+.+...                              ..++.+..++|
T Consensus       150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~------------------------------T~~l~~~~~~A  199 (287)
T PRK14173        150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSK------------------------------TQDLPAVTRRA  199 (287)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence            467999999999965 57999999999999999988631                              14688999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      |+||+++.-    .++++.+    ..|+|+++|++|--
T Consensus       200 DIvIsAvGk----p~~i~~~----~vk~GavVIDVGin  229 (287)
T PRK14173        200 DVLVVAVGR----PHLITPE----MVRPGAVVVDVGIN  229 (287)
T ss_pred             CEEEEecCC----cCccCHH----HcCCCCEEEEccCc
Confidence            999999962    3788874    46799999999843

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.91  E-value=6.8e-05  Score=67.23  Aligned_cols=78  Identities=21%  Similarity=0.289  Sum_probs=65.2

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||++.|||-+. +|+.+|.+|...|+.|+.+...                              ..++.+.+++|
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~------------------------------T~~l~~~~~~A  201 (284)
T PRK14170        152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR------------------------------TKDLPQVAKEA  201 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence            5689999999999765 6999999999999999998531                              14688999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |+|++++.-    .++++.+    ..|+|+++|++|-
T Consensus       202 DIvI~AvG~----~~~i~~~----~vk~GavVIDvGi  230 (284)
T PRK14170        202 DILVVATGL----AKFVKKD----YIKPGAIVIDVGM  230 (284)
T ss_pred             CEEEEecCC----cCccCHH----HcCCCCEEEEccC
Confidence            999999973    3678875    4678999999983

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.90  E-value=5.9e-05  Score=67.68  Aligned_cols=80  Identities=15%  Similarity=0.235  Sum_probs=66.1

Q ss_pred             cccccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||++.|||-+ -+|+.+|.+|...|+.|+.+...                              ..++.+.+++|
T Consensus       153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~------------------------------t~~l~~~~~~A  202 (284)
T PRK14190        153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK------------------------------TKNLAELTKQA  202 (284)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC------------------------------chhHHHHHHhC
Confidence            457999999999965 57999999999999999998521                              14688999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      |+|+.++.    ..++++.++    +|+|+++|++|.-.
T Consensus       203 DIvI~AvG----~p~~i~~~~----ik~gavVIDvGi~~  233 (284)
T PRK14190        203 DILIVAVG----KPKLITADM----VKEGAVVIDVGVNR  233 (284)
T ss_pred             CEEEEecC----CCCcCCHHH----cCCCCEEEEeeccc
Confidence            99999986    236888855    57999999998554

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.90  E-value=9.3e-05  Score=66.49  Aligned_cols=77  Identities=22%  Similarity=0.242  Sum_probs=64.8

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||++.|||-+. +|+.++.+|...|+.|+.+...                              ..+|.+..++|
T Consensus       154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~------------------------------T~~L~~~~~~A  203 (288)
T PRK14171        154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK------------------------------THNLSSITSKA  203 (288)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence            4579999999999765 6999999999999999988631                              14688999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+||+++.-    .++++.+    ..|+|+++|++|
T Consensus       204 DIvV~AvGk----p~~i~~~----~vk~GavVIDvG  231 (288)
T PRK14171        204 DIVVAAIGS----PLKLTAE----YFNPESIVIDVG  231 (288)
T ss_pred             CEEEEccCC----CCccCHH----HcCCCCEEEEee
Confidence            999999872    3688875    467999999998

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.89  E-value=7.4e-05  Score=66.98  Aligned_cols=77  Identities=23%  Similarity=0.271  Sum_probs=65.0

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||++.|||-+. +|+.+|.+|...|+.|+.+...                              ..++.+..++|
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~------------------------------T~nl~~~~~~A  201 (282)
T PRK14166        152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK------------------------------TKDLSLYTRQA  201 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence            4679999999999765 7999999999999999998631                              14688999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|++++.-    .++++.+    ..|+|+++|++|
T Consensus       202 DIvIsAvGk----p~~i~~~----~vk~GavVIDvG  229 (282)
T PRK14166        202 DLIIVAAGC----VNLLRSD----MVKEGVIVVDVG  229 (282)
T ss_pred             CEEEEcCCC----cCccCHH----HcCCCCEEEEec
Confidence            999999972    3688885    467999999998

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.89  E-value=1e-05  Score=74.78  Aligned_cols=106  Identities=18%  Similarity=0.184  Sum_probs=66.0

Q ss_pred             EEEEEecCchHHHHHHHhccCC--------CEEEEEcCCCCCccccccc-----cchhhhccccccccccccCCCCCHHH
Q 024297          155 TVFILGFGNIGVELAKRLRPFG--------VKIIATKRSWASHSQVSCQ-----SSALAVKNGIIDDLVDEKGCHEDIFE  221 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G--------~~V~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~e  221 (269)
                      +|+|||.|+.|.++|..|...|        .+|..|.|...........     +.+..+..|.  .+.....-..++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi--~Lp~~i~at~dl~e   78 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGI--KLPANLVAVPDLVE   78 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCC--cCCCCeEEECCHHH
Confidence            5899999999999999998767        9999998732100000000     0000011110  00000011258999


Q ss_pred             HHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          222 FASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       222 ll~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +++.||+|++++| +...+.++.+ .-. .++++..+|+++.|=
T Consensus        79 al~~ADiIIlAVP-s~~i~~vl~~-l~~-~l~~~~~iVs~tKGi  119 (342)
T TIGR03376        79 AAKGADILVFVIP-HQFLEGICKQ-LKG-HVKPNARAISCIKGL  119 (342)
T ss_pred             HHhcCCEEEEECC-hHHHHHHHHH-HHh-hcCCCCEEEEEeCCc
Confidence            9999999999999 3344444332 334 688899999999884

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=97.88  E-value=1.4e-05  Score=69.21  Aligned_cols=102  Identities=25%  Similarity=0.266  Sum_probs=61.0

Q ss_pred             CEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      ++|+||| .|+||..+++.|...|.+|++++|+.++.......... .....    .........+..+.++++|+|+++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~-~~~~~----g~~~~~~~~~~~ea~~~aDvVila   75 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALE-ELGHG----GSDIKVTGADNAEAAKRADVVILA   75 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHh-hcccc----CCCceEEEeChHHHHhcCCEEEEE
Confidence            3799997 89999999999999999999999876442110000000 00000    000000113557889999999999


Q ss_pred             cCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          233 LSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       233 lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +|.. ....++ + .+...++ +.++|++.=|
T Consensus        76 vp~~-~~~~~l-~-~l~~~l~-~~vvI~~~ng  103 (219)
T TIGR01915        76 VPWD-HVLKTL-E-SLRDELS-GKLVISPVVP  103 (219)
T ss_pred             CCHH-HHHHHH-H-HHHHhcc-CCEEEEeccC
Confidence            9944 333333 1 2321344 5889988655

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.88  E-value=7.5e-05  Score=66.94  Aligned_cols=77  Identities=16%  Similarity=0.216  Sum_probs=64.8

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||++.|||-+. +|+.++.+|...|+.|+.+...                              ..++.+..++|
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~------------------------------T~dl~~~~k~A  202 (282)
T PRK14180        153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF------------------------------TTDLKSHTTKA  202 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCC------------------------------CCCHHHHhhhc
Confidence            4679999999999765 7999999999999999998632                              14688899999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|+++++-    .++++.+    ..|+|+++|++|
T Consensus       203 DIvIsAvGk----p~~i~~~----~vk~gavVIDvG  230 (282)
T PRK14180        203 DILIVAVGK----PNFITAD----MVKEGAVVIDVG  230 (282)
T ss_pred             CEEEEccCC----cCcCCHH----HcCCCcEEEEec
Confidence            999999973    3678874    467999999998

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.88  E-value=0.00012  Score=65.76  Aligned_cols=77  Identities=19%  Similarity=0.260  Sum_probs=63.9

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccC----CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  222 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  222 (269)
                      +.++.||++.|||-+. +|+.+|.+|...    ++.|+.+...                              ..++.+.
T Consensus       148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~------------------------------T~~l~~~  197 (287)
T PRK14181        148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ------------------------------SENLTEI  197 (287)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC------------------------------CCCHHHH
Confidence            4679999999999765 699999999987    7899987531                              1468899


Q ss_pred             HhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          223 ASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       223 l~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +++||+|++++.-    .+++..++    .|+|+++|++|
T Consensus       198 ~~~ADIvV~AvG~----p~~i~~~~----ik~GavVIDvG  229 (287)
T PRK14181        198 LKTADIIIAAIGV----PLFIKEEM----IAEKAVIVDVG  229 (287)
T ss_pred             HhhCCEEEEccCC----cCccCHHH----cCCCCEEEEec
Confidence            9999999999972    26888854    67999999998

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.88  E-value=0.00012  Score=65.66  Aligned_cols=77  Identities=17%  Similarity=0.200  Sum_probs=64.6

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||++.|||-+. +|+.++.+|...|+.|+.+...                              ..++.+..++|
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~------------------------------T~nl~~~~~~A  201 (282)
T PRK14182        152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR------------------------------TADLAGEVGRA  201 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence            4579999999999665 7999999999999999998631                              14688999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|++++.-    .++++.++    .|+|+++|++|
T Consensus       202 DIvI~AvGk----~~~i~~~~----ik~gaiVIDvG  229 (282)
T PRK14182        202 DILVAAIGK----AELVKGAW----VKEGAVVIDVG  229 (282)
T ss_pred             CEEEEecCC----cCccCHHH----cCCCCEEEEee
Confidence            999999972    47888854    67899999998

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.84  E-value=3.4e-05  Score=70.84  Aligned_cols=102  Identities=15%  Similarity=0.148  Sum_probs=63.3

Q ss_pred             EEEEecCchHHHHHHHhcc-CCCEEEEEcCCCCCccccccccchhhhccccc--cccccccC--CCCCHHHHHhhCCEEE
Q 024297          156 VFILGFGNIGVELAKRLRP-FGVKIIATKRSWASHSQVSCQSSALAVKNGII--DDLVDEKG--CHEDIFEFASKADVVV  230 (269)
Q Consensus       156 vgIiG~G~iG~~~a~~l~~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~l~ell~~aDvvv  230 (269)
                      |||+|||.||+.+++.+.. -+++|.+++.............-.|-..++..  .......+  ...++++++.++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            6899999999999998774 47898887753221100000000000000000  00000000  1246889999999999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      .|   |+.+.+..+++.+. +|+++++|+-.
T Consensus        81 e~---Tp~~~~~~na~~~~-~~GakaVl~~~  107 (333)
T TIGR01546        81 DA---TPGGIGAKNKPLYE-KAGVKAIFQGG  107 (333)
T ss_pred             EC---CCCCCChhhHHHHH-hCCcCEEEECC
Confidence            88   45778899999999 99999998853

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.84  E-value=0.00011  Score=65.90  Aligned_cols=78  Identities=17%  Similarity=0.243  Sum_probs=64.6

Q ss_pred             cccccCCEEEEEecC-chHHHHHHHhcc--CCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh
Q 024297          148 GETLLGKTVFILGFG-NIGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS  224 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~--~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  224 (269)
                      +.++.||++.|||-+ .+|+.++.+|..  .|+.|+.+...                              ..++.+.++
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~------------------------------T~~l~~~~k  202 (284)
T PRK14193        153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG------------------------------TRDLAAHTR  202 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC------------------------------CCCHHHHHH
Confidence            467999999999965 579999999987  79999998631                              146889999


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +||+|++++.-    .++++.+    ..|+|+++|++|-
T Consensus       203 ~ADIvV~AvGk----p~~i~~~----~ik~GavVIDvGi  233 (284)
T PRK14193        203 RADIIVAAAGV----AHLVTAD----MVKPGAAVLDVGV  233 (284)
T ss_pred             hCCEEEEecCC----cCccCHH----HcCCCCEEEEccc
Confidence            99999999873    2688875    4679999999984

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.83  E-value=1e-05  Score=68.38  Aligned_cols=105  Identities=23%  Similarity=0.333  Sum_probs=57.7

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccccccc---C---CCCCHHHHHhhCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK---G---CHEDIFEFASKAD  227 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~l~ell~~aD  227 (269)
                      ++|+|+|+|-+|..+|..|...|++|+++|.+...-........++. -.| .++...+.   +   ...+..+.++++|
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~-E~~-l~~ll~~~~~~~~l~~t~~~~~ai~~ad   78 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIY-EPG-LDELLKENVSAGRLRATTDIEEAIKDAD   78 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS--CTT-HHHHHHHHHHTTSEEEESEHHHHHHH-S
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhcccccc-ccc-hhhhhccccccccchhhhhhhhhhhccc
Confidence            58999999999999999999999999999987653211100000000 000 01111111   1   2357888899999


Q ss_pred             EEEEecCCCcccc-CcCC--------HHHHhhhCCCCcEEEEcc
Q 024297          228 VVVCCLSLNKQTV-KLCS--------SSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       228 vvv~~lp~t~~t~-~li~--------~~~l~~~mk~ga~lIN~~  262 (269)
                      ++++|+| ||... +-.|        +...+ .++++.++|+-+
T Consensus        79 v~~I~Vp-TP~~~~~~~Dls~v~~a~~~i~~-~l~~~~lvV~~S  120 (185)
T PF03721_consen   79 VVFICVP-TPSDEDGSPDLSYVESAIESIAP-VLRPGDLVVIES  120 (185)
T ss_dssp             EEEE-----EBETTTSBETHHHHHHHHHHHH-HHCSCEEEEESS
T ss_pred             eEEEecC-CCccccCCccHHHHHHHHHHHHH-HHhhcceEEEcc
Confidence            9999999 55432 2222        12334 788899888754

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.83  E-value=3.4e-05  Score=69.64  Aligned_cols=100  Identities=17%  Similarity=0.119  Sum_probs=71.7

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      .|+.+||+|+|.+|+...+.+++||++|++++++..+.+...        ++-+.+...+...+.+.++++....|.++-
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~--------~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~  252 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAI--------KSLGADVFVDSTEDPDIMKAIMKTTDGGID  252 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHH--------HhcCcceeEEecCCHHHHHHHHHhhcCcce
Confidence            899999999999999999999999999999998864432221        212222233333244567788888898888


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +++.-  ..+-++. .++ .||++..+|-+|=
T Consensus       253 ~v~~~--a~~~~~~-~~~-~lk~~Gt~V~vg~  280 (360)
T KOG0023|consen  253 TVSNL--AEHALEP-LLG-LLKVNGTLVLVGL  280 (360)
T ss_pred             eeeec--cccchHH-HHH-HhhcCCEEEEEeC
Confidence            87733  3344444 778 8999988887763

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.82  E-value=9.8e-05  Score=67.70  Aligned_cols=77  Identities=19%  Similarity=0.298  Sum_probs=64.6

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||++.|||-+. +|+.+|.+|...|+.|+.+...                              ..++.+..++|
T Consensus       209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~------------------------------T~nl~~~~~~A  258 (345)
T PLN02897        209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF------------------------------TKDPEQITRKA  258 (345)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCC------------------------------CCCHHHHHhhC
Confidence            4679999999999765 6999999999999999998631                              13688999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+||+++.-    .++++.++    .|+|+++|++|
T Consensus       259 DIvIsAvGk----p~~v~~d~----vk~GavVIDVG  286 (345)
T PLN02897        259 DIVIAAAGI----PNLVRGSW----LKPGAVVIDVG  286 (345)
T ss_pred             CEEEEccCC----cCccCHHH----cCCCCEEEEcc
Confidence            999999873    36888854    67999999998

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=97.82  E-value=2e-05  Score=71.48  Aligned_cols=89  Identities=26%  Similarity=0.304  Sum_probs=61.8

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHh-hCCE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS-KADV  228 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~-~aDv  228 (269)
                      .-.+|||||||++|+-+|+.+...|..|+.++|+.-.                   +....++  .++.+.++.+ ..|+
T Consensus        51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdys-------------------saa~~yg~~~ft~lhdlcerhpDv  111 (480)
T KOG2380|consen   51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYS-------------------SAAEKYGSAKFTLLHDLCERHPDV  111 (480)
T ss_pred             cceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhH-------------------HHHHHhcccccccHHHHHhcCCCE
Confidence            3458999999999999999999999999999986522                   2223333  3567778777 7899


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      |++|+... .+..++-.==++ ++|.|++|+.+
T Consensus       112 vLlctsil-siekilatypfq-rlrrgtlfvdv  142 (480)
T KOG2380|consen  112 VLLCTSIL-SIEKILATYPFQ-RLRRGTLFVDV  142 (480)
T ss_pred             EEEEehhh-hHHHHHHhcCch-hhccceeEeee
Confidence            99996522 222332222245 57777777764

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.81  E-value=0.0001  Score=67.95  Aligned_cols=77  Identities=16%  Similarity=0.223  Sum_probs=64.8

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||++.|||-+. +|+.+|.+|...|+.|+.+...                              ..++.+..++|
T Consensus       226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~------------------------------T~nl~~~~r~A  275 (364)
T PLN02616        226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR------------------------------TKNPEEITREA  275 (364)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC------------------------------CCCHHHHHhhC
Confidence            4679999999999665 7999999999999999998531                              14688999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+||.++.    ..++++.++    .|+|+++|++|
T Consensus       276 DIVIsAvG----kp~~i~~d~----vK~GAvVIDVG  303 (364)
T PLN02616        276 DIIISAVG----QPNMVRGSW----IKPGAVVIDVG  303 (364)
T ss_pred             CEEEEcCC----CcCcCCHHH----cCCCCEEEecc
Confidence            99999996    236888854    67999999998

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.81  E-value=0.00011  Score=66.34  Aligned_cols=77  Identities=16%  Similarity=0.195  Sum_probs=65.0

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||++.|||-+. +|+.++.+|...|+.|+.+...                              ..++++..++|
T Consensus       162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~------------------------------T~nl~~~~~~A  211 (299)
T PLN02516        162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR------------------------------TPDPESIVREA  211 (299)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence            4689999999999765 6999999999999999998631                              13688999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|++++.-    .+++..+    ..|+|+++|++|
T Consensus       212 DIvv~AvGk----~~~i~~~----~vk~gavVIDvG  239 (299)
T PLN02516        212 DIVIAAAGQ----AMMIKGD----WIKPGAAVIDVG  239 (299)
T ss_pred             CEEEEcCCC----cCccCHH----HcCCCCEEEEee
Confidence            999999863    3788875    467999999998

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.77  E-value=3.6e-05  Score=67.31  Aligned_cols=94  Identities=17%  Similarity=0.191  Sum_probs=59.1

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCC---CE-EEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhh
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFG---VK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK  225 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G---~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~  225 (269)
                      ...+|+|||.|++|+++++.+...|   .+ |++++++.......                .....+  ...++++++++
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~   66 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQ----------------LQARYNVSTTTDWKQHVTS   66 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHH----------------HHHHcCcEEeCChHHHHhc
Confidence            3578999999999999999887665   33 77787642221111                111111  23578889999


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +|+|++++|.. ..+.++.  .+...++ +.++|++.-|-
T Consensus        67 ~DiViiavp~~-~~~~v~~--~l~~~~~-~~~vis~~~gi  102 (245)
T PRK07634         67 VDTIVLAMPPS-AHEELLA--ELSPLLS-NQLVVTVAAGI  102 (245)
T ss_pred             CCEEEEecCHH-HHHHHHH--HHHhhcc-CCEEEEECCCC
Confidence            99999999843 3233321  1220233 67888887664

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.76  E-value=0.0002  Score=64.37  Aligned_cols=77  Identities=19%  Similarity=0.255  Sum_probs=64.3

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhcc----CCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRP----FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  222 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~----~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  222 (269)
                      +.++.||++.|||-+. +|+.++.+|..    .|++|+.+...                              ..++.+.
T Consensus       152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~------------------------------t~~l~~~  201 (286)
T PRK14184        152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSR------------------------------TPDLAEE  201 (286)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCC------------------------------chhHHHH
Confidence            4679999999999765 69999999998    78999987631                              1468899


Q ss_pred             HhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          223 ASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       223 l~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +++||+||.++.    ..+++.+++    .|+|+++|++|
T Consensus       202 ~~~ADIVI~AvG----~p~li~~~~----vk~GavVIDVG  233 (286)
T PRK14184        202 CREADFLFVAIG----RPRFVTADM----VKPGAVVVDVG  233 (286)
T ss_pred             HHhCCEEEEecC----CCCcCCHHH----cCCCCEEEEee
Confidence            999999999995    347888855    58999999998

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.76  E-value=4.7e-05  Score=69.82  Aligned_cols=96  Identities=17%  Similarity=0.191  Sum_probs=65.9

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      .|++|+|+|+|.+|....|.++++|++|++++++.++.....+.        | .+...... ..+.++.+-+.+|+++.
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l--------G-Ad~~i~~~-~~~~~~~~~~~~d~ii~  235 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL--------G-ADHVINSS-DSDALEAVKEIADAIID  235 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh--------C-CcEEEEcC-CchhhHHhHhhCcEEEE
Confidence            48899999999999999999999999999999988763221110        0 01111111 12334444445999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      ++| ..    .++. .++ .++++..++-+|=.
T Consensus       236 tv~-~~----~~~~-~l~-~l~~~G~~v~vG~~  261 (339)
T COG1064         236 TVG-PA----TLEP-SLK-ALRRGGTLVLVGLP  261 (339)
T ss_pred             CCC-hh----hHHH-HHH-HHhcCCEEEEECCC
Confidence            998 32    2333 677 89999988888754

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.75  E-value=5e-05  Score=68.32  Aligned_cols=102  Identities=23%  Similarity=0.233  Sum_probs=61.3

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l  233 (269)
                      .+|+|||.|.||..+|..|...|.+|+.++|+.+.... ... ..+.+.+|.   .........+..++ +.+|+|++++
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~-~~~-~g~~~~~~~---~~~~~~~~~~~~~~-~~~d~vila~   74 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDA-LNE-NGLRLEDGE---ITVPVLAADDPAEL-GPQDLVILAV   74 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHH-HHH-cCCcccCCc---eeecccCCCChhHc-CCCCEEEEec
Confidence            37999999999999999999999999999985433111 100 011110110   00000122445555 8999999999


Q ss_pred             CCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          234 SLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       234 p~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      |.. ++..++.. ... .+.+++.+|...-|
T Consensus        75 k~~-~~~~~~~~-l~~-~l~~~~~iv~~~nG  102 (304)
T PRK06522         75 KAY-QLPAALPS-LAP-LLGPDTPVLFLQNG  102 (304)
T ss_pred             ccc-cHHHHHHH-Hhh-hcCCCCEEEEecCC
Confidence            843 44443322 333 56667777766554

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.75  E-value=6e-05  Score=69.20  Aligned_cols=89  Identities=12%  Similarity=0.047  Sum_probs=63.6

Q ss_pred             CCEEEEEecCchHHHHHHHhcc-C-CCEEEEEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHHhhC
Q 024297          153 GKTVFILGFGNIGVELAKRLRP-F-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKA  226 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~-~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~a  226 (269)
                      -+++||||.|.+|+..++.+.. + .-+|.+|+|+.++...-.              +...+.+    ...+.++++++|
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~--------------~~~~~~g~~v~~~~~~~eav~~a  193 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFA--------------LRASDYEVPVRAATDPREAVEGC  193 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHH--------------HHHHhhCCcEEEeCCHHHHhccC
Confidence            4789999999999997776653 3 458999999876531110              0001111    246889999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|+++.|   .+..++..+    .+|||+.+.++|
T Consensus       194 DiVitaT~---s~~P~~~~~----~l~~g~~v~~vG  222 (325)
T TIGR02371       194 DILVTTTP---SRKPVVKAD----WVSEGTHINAIG  222 (325)
T ss_pred             CEEEEecC---CCCcEecHH----HcCCCCEEEecC
Confidence            99999976   445777663    578999999997

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.73  E-value=5.8e-05  Score=67.02  Aligned_cols=86  Identities=16%  Similarity=0.169  Sum_probs=57.5

Q ss_pred             CCEEEEEecCchHHHHHHHhccCC----CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      ..+|+|||+|+||.++++.+...|    -+|++++++....                  .. .   ...+..+++.++|+
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------------------~~-~---~~~~~~~~~~~~D~   60 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------------------PF-V---YLQSNEELAKTCDI   60 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------------------Ce-E---EeCChHHHHHhCCE
Confidence            468999999999999999998765    2599998765331                  00 0   12456677889999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      |++++| ..++..++.. ... .+++ ..+|.+.=|
T Consensus        61 Vilavk-p~~~~~vl~~-i~~-~l~~-~~iIS~~aG   92 (260)
T PTZ00431         61 IVLAVK-PDLAGKVLLE-IKP-YLGS-KLLISICGG   92 (260)
T ss_pred             EEEEeC-HHHHHHHHHH-HHh-hccC-CEEEEEeCC
Confidence            999988 4455555443 323 3444 455665544

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.72  E-value=0.0002  Score=64.62  Aligned_cols=77  Identities=13%  Similarity=0.200  Sum_probs=63.1

Q ss_pred             cccccCCEEEEEecC-chHHHHHHHhccC----CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH
Q 024297          148 GETLLGKTVFILGFG-NIGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  222 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  222 (269)
                      +.++.||+|.|||-+ .+|+.+|.+|...    ++.|+.+...                              ..++.+.
T Consensus       156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~------------------------------T~~l~~~  205 (297)
T PRK14168        156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR------------------------------SKNLARH  205 (297)
T ss_pred             CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC------------------------------CcCHHHH
Confidence            568999999999965 5799999999976    7899987521                              1468899


Q ss_pred             HhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          223 ASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       223 l~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      .++||+||+++.    ..++++.+    ..|+|+++|++|
T Consensus       206 ~~~ADIvVsAvG----kp~~i~~~----~ik~gavVIDvG  237 (297)
T PRK14168        206 CQRADILIVAAG----VPNLVKPE----WIKPGATVIDVG  237 (297)
T ss_pred             HhhCCEEEEecC----CcCccCHH----HcCCCCEEEecC
Confidence            999999999985    23678875    467999999998

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.71  E-value=2.9e-05  Score=67.44  Aligned_cols=94  Identities=13%  Similarity=0.143  Sum_probs=66.1

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l  233 (269)
                      +++|.||+|+||..++++|+.-|.+|++||+++.......+             .......+.+++-..|+..-+|-+.+
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~-------------~ga~~a~sl~el~~~L~~pr~vWlMv   67 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKD-------------EGATGAASLDELVAKLSAPRIVWLMV   67 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHh-------------cCCccccCHHHHHHhcCCCcEEEEEc
Confidence            47899999999999999999999999999998754211110             11111112233444456779999999


Q ss_pred             CCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          234 SLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       234 p~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |...-|...++. .-. .|.+|-++|+-+
T Consensus        68 Pag~it~~vi~~-la~-~L~~GDivIDGG   94 (300)
T COG1023          68 PAGDITDAVIDD-LAP-LLSAGDIVIDGG   94 (300)
T ss_pred             cCCCchHHHHHH-HHh-hcCCCCEEEECC
Confidence            988667666654 555 788898888754

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.71  E-value=5.5e-05  Score=70.42  Aligned_cols=109  Identities=15%  Similarity=0.120  Sum_probs=66.4

Q ss_pred             CCEEEEEecCchHHHHHHHhccCC-------CEEEEEcCCCCCc-----cccccccchhhhccccccccccccCCCCCHH
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFG-------VKIIATKRSWASH-----SQVSCQSSALAVKNGIIDDLVDEKGCHEDIF  220 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G-------~~V~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  220 (269)
                      ..+|+|||.|++|.++|..|...|       .+|..|.|+..-.     ......+.+..|..|.  .+........++.
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~--~Lp~ni~~tsdl~   88 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGI--KLPDNIVAVSDLK   88 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCC--cCCCceEEecCHH
Confidence            358999999999999999998665       7999998775310     0000000111111221  1111111236788


Q ss_pred             HHHhhCCEEEEecCCCccccCcCCHHHHhh--hCCCCcEEEEccCCCC
Q 024297          221 EFASKADVVVCCLSLNKQTVKLCSSSLSSK--SMFFATYVVFMFQGHG  266 (269)
Q Consensus       221 ell~~aDvvv~~lp~t~~t~~li~~~~l~~--~mk~ga~lIN~~RG~~  266 (269)
                      ++++.+|+|++++| +...+.++.  .++.  .+++++.+|+++-|=.
T Consensus        89 eav~~aDiIvlAVP-sq~l~~vl~--~l~~~~~l~~~~~iIS~aKGIe  133 (365)
T PTZ00345         89 EAVEDADLLIFVIP-HQFLESVLS--QIKENNNLKKHARAISLTKGII  133 (365)
T ss_pred             HHHhcCCEEEEEcC-hHHHHHHHH--HhccccccCCCCEEEEEeCCcc
Confidence            99999999999999 333444332  2221  2455779999988843

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=97.71  E-value=0.00061  Score=61.99  Aligned_cols=132  Identities=16%  Similarity=0.122  Sum_probs=90.0

Q ss_pred             HhcCCcEEEecCC-CCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec---CchHHHHHH
Q 024297           95 ATRCGIKVARIPG-DVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF---GNIGVELAK  170 (269)
Q Consensus        95 ~~~~gI~v~n~~~-~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~---G~iG~~~a~  170 (269)
                      +...+|+|.|... .   ...++  .+|+-++.+.+.+                 ..+.|++|+++|=   +++.+.++.
T Consensus       119 a~~~~vPVINa~~g~---~~HPt--Q~LaDl~Ti~e~~-----------------G~l~g~kv~~vGD~~~~~v~~Sl~~  176 (305)
T PRK00856        119 AESSDVPVINAGDGS---HQHPT--QALLDLLTIREEF-----------------GRLEGLKVAIVGDIKHSRVARSNIQ  176 (305)
T ss_pred             HHHCCCCEEECCCCC---CCCcH--HHHHHHHHHHHHh-----------------CCCCCCEEEEECCCCCCcHHHHHHH
Confidence            3446799999864 2   33555  5555556555432                 2488999999996   699999999


Q ss_pred             HhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCcc------------
Q 024297          171 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ------------  238 (269)
Q Consensus       171 ~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~------------  238 (269)
                      .+..||++|.++.+..-..                 +. ........+++++++++|||....=-.+.            
T Consensus       177 ~~~~~g~~~~~~~P~~~~~-----------------~~-~~~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~~~~~~~~~  238 (305)
T PRK00856        177 ALTRLGAEVRLIAPPTLLP-----------------EG-MPEYGVHTDLDEVIEDADVVMMLRVQKERMDGGLLPSYEEY  238 (305)
T ss_pred             HHHHcCCEEEEECCcccCc-----------------cc-ccceEEECCHHHHhCCCCEEEECCcccccccccchHHHHHH
Confidence            9999999999998643221                 00 11112347899999999999885410000            


Q ss_pred             -ccCcCCHHHHhhhCCCCcEEEEcc---CCCCc
Q 024297          239 -TVKLCSSSLSSKSMFFATYVVFMF---QGHGV  267 (269)
Q Consensus       239 -t~~li~~~~l~~~mk~ga~lIN~~---RG~~v  267 (269)
                       ....++++.++ ..|++++|.-+.   ||.=|
T Consensus       239 ~~~y~v~~~ll~-~a~~~~~~mHcLPa~Rg~Ev  270 (305)
T PRK00856        239 KRSYGLTAERLA-LAKPDAIVMHPGPVNRGVEI  270 (305)
T ss_pred             hccCccCHHHHh-hcCCCCEEECCCCCCCCCcc
Confidence             14567999999 899999887654   55433

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.71  E-value=0.00023  Score=64.15  Aligned_cols=77  Identities=14%  Similarity=0.190  Sum_probs=63.2

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccC----CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  222 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  222 (269)
                      +.++.||++.|||-+. +|+.++.+|...    ++.|+.+...                              ..++.+.
T Consensus       152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~------------------------------T~nl~~~  201 (293)
T PRK14185        152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR------------------------------SKNLKKE  201 (293)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC------------------------------CCCHHHH
Confidence            3579999999999765 699999999876    7899988521                              1468899


Q ss_pred             HhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          223 ASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       223 l~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      .++||+|++++.-    .++++.+    ..|+|+++|++|
T Consensus       202 ~~~ADIvIsAvGk----p~~i~~~----~vk~gavVIDvG  233 (293)
T PRK14185        202 CLEADIIIAALGQ----PEFVKAD----MVKEGAVVIDVG  233 (293)
T ss_pred             HhhCCEEEEccCC----cCccCHH----HcCCCCEEEEec
Confidence            9999999999973    3678874    577999999998

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=97.71  E-value=3.5e-05  Score=72.43  Aligned_cols=104  Identities=14%  Similarity=0.107  Sum_probs=61.0

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccccc-ccC---CCCCHHHHHhhCCEEE
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKG---CHEDIFEFASKADVVV  230 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~l~ell~~aDvvv  230 (269)
                      +|+|||+|.||..+|..+. .|++|++||++..+-.......++. +-.+. ++... ...   ...+..+++++||+|+
T Consensus         2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~-~e~~l-~~~l~~~~~~l~~t~~~~~~~~~ad~vi   78 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPI-VDKEI-QQFLQSDKIHFNATLDKNEAYRDADYVI   78 (388)
T ss_pred             EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCC-CCcCH-HHHHHhCCCcEEEecchhhhhcCCCEEE
Confidence            7999999999999997766 5999999999776522111100000 00000 00000 111   1134667789999999


Q ss_pred             EecCCCccc-cCcCCH-------HHHhhhCCCCcEEEEcc
Q 024297          231 CCLSLNKQT-VKLCSS-------SLSSKSMFFATYVVFMF  262 (269)
Q Consensus       231 ~~lp~t~~t-~~li~~-------~~l~~~mk~ga~lIN~~  262 (269)
                      +++|...+- .+.++-       +.+. .+++|.++|+.+
T Consensus        79 i~Vpt~~~~k~~~~dl~~v~~v~~~i~-~~~~g~lVV~~S  117 (388)
T PRK15057         79 IATPTDYDPKTNYFNTSSVESVIKDVV-EINPYAVMVIKS  117 (388)
T ss_pred             EeCCCCCccCCCCcChHHHHHHHHHHH-hcCCCCEEEEee
Confidence            999944111 122221       2334 468899998765

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.70  E-value=4e-05  Score=70.33  Aligned_cols=104  Identities=20%  Similarity=0.220  Sum_probs=62.4

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhh--cccccccc-ccccCCCCCHHHHHhhCCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV--KNGIIDDL-VDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~l~ell~~aDvvv  230 (269)
                      ++|+|||.|.||..+|..|...|.+|++++|+...  ..... ....+  .++..... ........+. +.+..+|+|+
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~--~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi   78 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIG--DELRA-HGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVL   78 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHH--HHHHh-cCceeecCCCcceecccceeEeccCh-hhccCCCEEE
Confidence            47999999999999999999999999999985321  10000 00000  00000000 0000012334 5678999999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +++|. ++....+ ++... .+++++++|.+.=|
T Consensus        79 l~vk~-~~~~~~~-~~l~~-~~~~~~iii~~~nG  109 (341)
T PRK08229         79 VTVKS-AATADAA-AALAG-HARPGAVVVSFQNG  109 (341)
T ss_pred             EEecC-cchHHHH-HHHHh-hCCCCCEEEEeCCC
Confidence            99984 4555554 23445 67888888876433

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.69  E-value=8.5e-05  Score=67.83  Aligned_cols=94  Identities=16%  Similarity=0.134  Sum_probs=61.3

Q ss_pred             cCCEEEEEecCchHHHHHHHhcc-CC-CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRP-FG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~-~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      ..++|+|||.|.+|+..++.+.. ++ .+|.+|+|++++...-...   +. ..|      .......+.++++.+||+|
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~---~~-~~g------~~~~~~~~~~~av~~aDIV  193 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAE---LR-AQG------FDAEVVTDLEAAVRQADII  193 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHH---HH-hcC------CceEEeCCHHHHHhcCCEE
Confidence            46799999999999999985553 55 5899999987652111100   00 000      0011236788999999999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +++.|.   ...++..   + .+++|+.+.-++
T Consensus       194 i~aT~s---~~pvl~~---~-~l~~g~~i~~ig  219 (314)
T PRK06141        194 SCATLS---TEPLVRG---E-WLKPGTHLDLVG  219 (314)
T ss_pred             EEeeCC---CCCEecH---H-HcCCCCEEEeeC
Confidence            888663   3567766   3 678899655454

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=97.68  E-value=4.4e-06  Score=70.25  Aligned_cols=108  Identities=16%  Similarity=0.133  Sum_probs=62.7

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcccccccc---chhhhcccccc-----ccccccCCCCCHHHHHhhC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQS---SALAVKNGIID-----DLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~l~ell~~a  226 (269)
                      +|+|||.|.||+.+|..+...|++|..||++...........   ....+..|...     ..........+++++. .|
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a   79 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA   79 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence            699999999999999999999999999998765421111000   00001111110     0011111246788877 99


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      |+|+=++|-+.+.+.-+-++.-+ .++++++|.....+
T Consensus        80 dlViEai~E~l~~K~~~~~~l~~-~~~~~~ilasnTSs  116 (180)
T PF02737_consen   80 DLVIEAIPEDLELKQELFAELDE-ICPPDTILASNTSS  116 (180)
T ss_dssp             SEEEE-S-SSHHHHHHHHHHHHC-CS-TTSEEEE--SS
T ss_pred             heehhhccccHHHHHHHHHHHHH-HhCCCceEEecCCC
Confidence            99999999766655544443444 78899888765543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.68  E-value=0.00021  Score=64.51  Aligned_cols=77  Identities=14%  Similarity=0.264  Sum_probs=63.1

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhcc----CCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRP----FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  222 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~----~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  222 (269)
                      +.++.||++.|||-+. +|+.++.+|..    .|++|+.+..+                              ..++.+.
T Consensus       154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~------------------------------t~~l~~~  203 (295)
T PRK14174        154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSA------------------------------TKDIPSY  203 (295)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCC------------------------------chhHHHH
Confidence            3679999999999765 69999999886    58888887632                              1368899


Q ss_pred             HhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          223 ASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       223 l~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +++||+||.+++-.    ++|++++    +|+|+++|++|
T Consensus       204 ~~~ADIvI~Avg~~----~li~~~~----vk~GavVIDVg  235 (295)
T PRK14174        204 TRQADILIAAIGKA----RFITADM----VKPGAVVIDVG  235 (295)
T ss_pred             HHhCCEEEEecCcc----CccCHHH----cCCCCEEEEee
Confidence            99999999999522    7888865    58999999998

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=97.68  E-value=4.2e-05  Score=68.17  Aligned_cols=92  Identities=24%  Similarity=0.278  Sum_probs=58.9

Q ss_pred             CEEEEEecCchHHHHHHHhccC--CCE-EEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCE
Q 024297          154 KTVFILGFGNIGVELAKRLRPF--GVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV  228 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~--G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDv  228 (269)
                      .+|||||+|.||+.+++.+...  +++ +.++|++..+..                 ......+  .+.++++++.++|+
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~-----------------~~a~~~~~~~~~~~~ell~~~Dv   64 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAE-----------------NLASKTGAKACLSIDELVEDVDL   64 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHH-----------------HHHHhcCCeeECCHHHHhcCCCE
Confidence            4799999999999999988865  577 446777653311                 1111111  34688999999999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCcc
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVS  268 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vd  268 (269)
                      |+.+.|...  .    .+.....++.|.-++.++-|.+.|
T Consensus        65 Vvi~a~~~~--~----~~~~~~al~~Gk~Vvv~s~gAl~d   98 (265)
T PRK13304         65 VVECASVNA--V----EEVVPKSLENGKDVIIMSVGALAD   98 (265)
T ss_pred             EEEcCChHH--H----HHHHHHHHHcCCCEEEEchHHhcC
Confidence            999987321  1    222222566666666666665544

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.66  E-value=0.00029  Score=63.65  Aligned_cols=77  Identities=19%  Similarity=0.243  Sum_probs=63.1

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccC----CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  222 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  222 (269)
                      +.++.||++.|||-+. +|+.+|.+|...    ++.|+.+...                              ..++.+.
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~------------------------------T~~l~~~  201 (297)
T PRK14167        152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR------------------------------TDDLAAK  201 (297)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC------------------------------CCCHHHH
Confidence            4579999999999765 799999999866    8999997521                              1468899


Q ss_pred             HhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          223 ASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       223 l~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      .++||+|++++-    ..++++.+    ..|+|+++|++|
T Consensus       202 ~~~ADIvIsAvG----kp~~i~~~----~ik~gaiVIDvG  233 (297)
T PRK14167        202 TRRADIVVAAAG----VPELIDGS----MLSEGATVIDVG  233 (297)
T ss_pred             HhhCCEEEEccC----CcCccCHH----HcCCCCEEEEcc
Confidence            999999999985    23688884    467999999998

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.66  E-value=0.00013  Score=62.48  Aligned_cols=108  Identities=23%  Similarity=0.242  Sum_probs=70.2

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhc-ccc----------------cc-cc
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVK-NGI----------------ID-DL  209 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~-~~~----------------~~-~~  209 (269)
                      ..|..++|+|+|.|.+|..+|+.|...|. +|+.+|+..-.......+ . |... -|.                .. ..
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq-~-~~~~~iG~~Ka~~~~~~l~~inp~~~i~~   94 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQ-Q-YKASQVGEPKTEALKENISEINPYTEIEA   94 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccc-c-CChhhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence            56899999999999999999999999999 699999762110000000 0 0000 000                00 00


Q ss_pred             ccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEE
Q 024297          210 VDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVF  260 (269)
Q Consensus       210 ~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN  260 (269)
                      .....+.+++.++++++|+|+.+ ..+++++..+..+... .++...++..
T Consensus        95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~-~~~~~~ii~~  143 (200)
T TIGR02354        95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLE-KYKDKYLIAA  143 (200)
T ss_pred             eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHH-HcCCCcEEEE
Confidence            00111224567789999999999 5688899988887777 7777666653

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.66  E-value=5.9e-05  Score=70.44  Aligned_cols=97  Identities=13%  Similarity=0.183  Sum_probs=65.8

Q ss_pred             CEEEEEecCchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          154 KTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      ++|.|||.|.||+.+|+.|...| .+|++.||+..+........      .+.+....-+....+.+.+++++.|+|+++
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~------~~~v~~~~vD~~d~~al~~li~~~d~VIn~   75 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI------GGKVEALQVDAADVDALVALIKDFDLVINA   75 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc------cccceeEEecccChHHHHHHHhcCCEEEEe
Confidence            58999999999999999999998 89999999876532221100      000111111222456789999999999999


Q ss_pred             cCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          233 LSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       233 lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +|..      ++...++-.++.|.-.++++
T Consensus        76 ~p~~------~~~~i~ka~i~~gv~yvDts   99 (389)
T COG1748          76 APPF------VDLTILKACIKTGVDYVDTS   99 (389)
T ss_pred             CCch------hhHHHHHHHHHhCCCEEEcc
Confidence            9943      33444432667777777665

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.63  E-value=0.00011  Score=66.20  Aligned_cols=103  Identities=16%  Similarity=0.082  Sum_probs=65.8

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      .+.+++|.|+|.|.+|++++..|...|+ +|+++||+..+.......   +.-...   .  .......++.+.++++|+
T Consensus       124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~---l~~~~~---~--~~~~~~~~~~~~~~~aDi  195 (284)
T PRK12549        124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADE---LNARFP---A--ARATAGSDLAAALAAADG  195 (284)
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH---HHhhCC---C--eEEEeccchHhhhCCCCE
Confidence            4678999999999999999999999998 799999986552111100   000000   0  000112456667889999


Q ss_pred             EEEecCCCccc--cCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          229 VVCCLSLNKQT--VKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       229 vv~~lp~t~~t--~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      ||++.|.-...  ...++.   . .++++.+++++.-.
T Consensus       196 VInaTp~Gm~~~~~~~~~~---~-~l~~~~~v~DivY~  229 (284)
T PRK12549        196 LVHATPTGMAKHPGLPLPA---E-LLRPGLWVADIVYF  229 (284)
T ss_pred             EEECCcCCCCCCCCCCCCH---H-HcCCCcEEEEeeeC
Confidence            99998864221  112333   3 57778888877543

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.63  E-value=3.8e-05  Score=70.91  Aligned_cols=106  Identities=22%  Similarity=0.168  Sum_probs=63.8

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l  233 (269)
                      .+|+|||.|.+|..+|..|...| +|..|.++...............+..+.. ..........++.+.++.+|+|++++
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~-~l~~~i~~t~d~~~a~~~aDlVilav   85 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDV-VLSDTLRATTDFAEAANCADVVVMGV   85 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCc-ccCCCeEEECCHHHHHhcCCEEEEEe
Confidence            57999999999999999999888 67777665432100000000000000000 00000112357888899999999999


Q ss_pred             CCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          234 SLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       234 p~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      | +..++..+.. .-. .+++++.+|++.-|
T Consensus        86 p-s~~~~~vl~~-i~~-~l~~~~~vIsl~kG  113 (341)
T PRK12439         86 P-SHGFRGVLTE-LAK-ELRPWVPVVSLVKG  113 (341)
T ss_pred             C-HHHHHHHHHH-HHh-hcCCCCEEEEEEeC
Confidence            9 4345554433 334 67888888888766

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.59  E-value=0.00031  Score=62.17  Aligned_cols=103  Identities=20%  Similarity=0.161  Sum_probs=64.0

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccc------------------ccc
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII------------------DDL  209 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~  209 (269)
                      +.++.|+||.|-|||++|+.+|+.|..+|++|+++..+...          ...++|+.                  ...
T Consensus        33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~----------i~~~~Gld~~~l~~l~~~~~~~~~~v~~~  102 (254)
T cd05313          33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGY----------VYDPDGFTGEKLAELKEIKEVRRGRVSEY  102 (254)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCce----------EECCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence            46799999999999999999999999999999965432111          00111110                  000


Q ss_pred             cccc--CCCCCHHHHH-hhCCEEEEecCCCccccCcCCHHHHhhhCC--CCcEEEEccCCCC
Q 024297          210 VDEK--GCHEDIFEFA-SKADVVVCCLSLNKQTVKLCSSSLSSKSMF--FATYVVFMFQGHG  266 (269)
Q Consensus       210 ~~~~--~~~~~l~ell-~~aDvvv~~lp~t~~t~~li~~~~l~~~mk--~ga~lIN~~RG~~  266 (269)
                      ...+  ....+-++++ .+|||++-|     .+.+.|+.+... .++  +-.+++--+=|++
T Consensus       103 ~~~~~~a~~~~~~~~~~~~~DIliPc-----Al~~~I~~~na~-~i~~~~ak~I~EgAN~p~  158 (254)
T cd05313         103 AKKYGTAKYFEGKKPWEVPCDIAFPC-----ATQNEVDAEDAK-LLVKNGCKYVAEGANMPC  158 (254)
T ss_pred             hhcCCCCEEeCCcchhcCCCcEEEec-----cccccCCHHHHH-HHHHcCCEEEEeCCCCCC
Confidence            0000  0111222333 389999888     467899999888 774  3345655555554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.57  E-value=0.00015  Score=66.58  Aligned_cols=95  Identities=13%  Similarity=0.089  Sum_probs=63.8

Q ss_pred             cCCEEEEEecCchHHHHHHHhc-cCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~-~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      ..++++|||.|.+|+..++.+. ..+. +|.+++|+..+...-...   +....+      .......+++++++++|+|
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~---~~~~~~------~~~~~~~~~~~~~~~aDiV  196 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQE---IQSKFN------TEIYVVNSADEAIEEADII  196 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHH---HHHhcC------CcEEEeCCHHHHHhcCCEE
Confidence            4679999999999999887765 4576 699999987652111000   000000      0001246789999999999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +++.|.+   ..++.    + .+|+|+.++.+|-
T Consensus       197 i~aT~s~---~p~i~----~-~l~~G~hV~~iGs  222 (325)
T PRK08618        197 VTVTNAK---TPVFS----E-KLKKGVHINAVGS  222 (325)
T ss_pred             EEccCCC---CcchH----H-hcCCCcEEEecCC
Confidence            9997743   46664    3 6789999988863

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.56  E-value=8.4e-05  Score=67.00  Aligned_cols=104  Identities=17%  Similarity=0.157  Sum_probs=61.4

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l  233 (269)
                      .+|+|+|.|.+|..+|..|...|.+|+.++| .... ..... ..+.+.... ...........+.++....+|+|++++
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~-~~~~~-~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~vilav   76 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRA-KALRE-RGLVIRSDH-GDAVVPGPVITDPEELTGPFDLVILAV   76 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHH-HHHHh-CCeEEEeCC-CeEEecceeecCHHHccCCCCEEEEEe
Confidence            3799999999999999999999999999998 3221 11100 001110000 000000001245666678999999999


Q ss_pred             CCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          234 SLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       234 p~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      |. .++...+ ++... .++++.++|++.=|
T Consensus        77 k~-~~~~~~~-~~l~~-~~~~~~~ii~~~nG  104 (305)
T PRK12921         77 KA-YQLDAAI-PDLKP-LVGEDTVIIPLQNG  104 (305)
T ss_pred             cc-cCHHHHH-HHHHh-hcCCCCEEEEeeCC
Confidence            94 3444443 22333 56778888766433

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.55  E-value=0.00018  Score=66.12  Aligned_cols=95  Identities=17%  Similarity=0.012  Sum_probs=64.9

Q ss_pred             cCCEEEEEecCchHHHHHHHhc-cCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~-~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      ..++++|||.|.+|+..++.+. ..+. +|.+|+|+..+...-...     ++.    .........+++++.+.+||+|
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~-----~~~----~~g~~v~~~~~~~~av~~aDiV  198 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQ-----LSS----LLGIDVTAATDPRAAMSGADII  198 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHH-----HHh----hcCceEEEeCCHHHHhccCCEE
Confidence            3579999999999999999887 4775 699999987652111000     000    0000011246789999999999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +++.|.   +..++..+    .+|+|+.+..++
T Consensus       199 vtaT~s---~~p~i~~~----~l~~g~~i~~vg  224 (326)
T TIGR02992       199 VTTTPS---ETPILHAE----WLEPGQHVTAMG  224 (326)
T ss_pred             EEecCC---CCcEecHH----HcCCCcEEEeeC
Confidence            999764   45777763    578899888776

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=97.54  E-value=0.00015  Score=66.70  Aligned_cols=69  Identities=28%  Similarity=0.285  Sum_probs=50.4

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      .++|||||-|..|++++.....+|++|++.|++.+......        .+.   .....+.+...+.+++.+||+|..=
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~v--------a~~---~i~~~~dD~~al~ela~~~DViT~E   69 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQV--------ADR---VIVAAYDDPEALRELAAKCDVITYE   69 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhc--------ccc---eeecCCCCHHHHHHHHhhCCEEEEe
Confidence            47999999999999999999999999999998776532211        111   0111111345789999999998753

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.53  E-value=0.00026  Score=61.70  Aligned_cols=37  Identities=41%  Similarity=0.583  Sum_probs=33.5

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  185 (269)
                      .++.+++|+|.|||++|+.+|+.|..+|++|+++..+
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            6789999999999999999999999999999966543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=97.52  E-value=8.4e-05  Score=71.24  Aligned_cols=87  Identities=10%  Similarity=0.087  Sum_probs=64.1

Q ss_pred             hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh---CCEEEEecCCCcccc
Q 024297          164 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK---ADVVVCCLSLNKQTV  240 (269)
Q Consensus       164 iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDvvv~~lp~t~~t~  240 (269)
                      ||+.+|++|...|++|.+|||++.+......       ..|  ..  .......+++++++.   +|+|++++|..+.+.
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~-------~~g--~~--~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~   69 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLA-------EEG--KG--KKIVPAYTLEEFVASLEKPRKILLMVKAGAPVD   69 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHH-------hhC--CC--CCeEeeCCHHHHHhhCCCCCEEEEECCCchHHH
Confidence            7999999999999999999998766321110       000  00  001134678888774   899999999988888


Q ss_pred             CcCCHHHHhhhCCCCcEEEEccC
Q 024297          241 KLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       241 ~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      .+++ +.+. .|.+|.++|+.+-
T Consensus        70 ~Vi~-~l~~-~l~~GdiiID~gn   90 (459)
T PRK09287         70 AVIE-QLLP-LLEKGDIIIDGGN   90 (459)
T ss_pred             HHHH-HHHh-cCCCCCEEEECCC
Confidence            8884 4788 8999999999874

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=97.50  E-value=0.0014  Score=59.70  Aligned_cols=138  Identities=15%  Similarity=0.098  Sum_probs=91.6

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec-CchHHHHHHHh
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF-GNIGVELAKRL  172 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~-G~iG~~~a~~l  172 (269)
                      .+...+++|.|..+.   +..++  .+|.-++.+.+.+                 ..+.|.+|+++|= +++.+.++..+
T Consensus       115 ~a~~~~vPVINag~~---~~HPt--QaL~Dl~Ti~e~~-----------------g~l~gl~i~~vGd~~~v~~Sl~~~l  172 (304)
T PRK00779        115 LAEYSTVPVINGLTD---LSHPC--QILADLLTIYEHR-----------------GSLKGLKVAWVGDGNNVANSLLLAA  172 (304)
T ss_pred             HHHhCCCCEEeCCCC---CCChH--HHHHHHHHHHHHh-----------------CCcCCcEEEEEeCCCccHHHHHHHH
Confidence            345568999999764   45666  5666666665542                 2488999999996 89999999999


Q ss_pred             ccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec----CCCc---c-----cc
Q 024297          173 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL----SLNK---Q-----TV  240 (269)
Q Consensus       173 ~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l----p~t~---~-----t~  240 (269)
                      ..+|++|.++.+..-........  -+.-.+|+      +.....+++++++++|+|....    ....   +     ..
T Consensus       173 ~~~g~~v~~~~P~~~~~~~~~~~--~~~~~~g~------~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~  244 (304)
T PRK00779        173 ALLGFDLRVATPKGYEPDPEIVE--KIAKETGA------SIEVTHDPKEAVKGADVVYTDVWVSMGQEAEAEERLKAFAP  244 (304)
T ss_pred             HHcCCEEEEECCcccCCCHHHHH--HHHHHcCC------eEEEEcCHHHHhCCCCEEEecCccccccchhHHHHHHHhcc
Confidence            99999999998743221100000  00000110      0112478999999999999862    1100   1     24


Q ss_pred             CcCCHHHHhhhCCCCcEEEEcc
Q 024297          241 KLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       241 ~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      .-++++.++ .+|++++|.-+.
T Consensus       245 y~v~~~~l~-~~~~~~ivmHpl  265 (304)
T PRK00779        245 YQVNEELMA-LAKPDAIFMHCL  265 (304)
T ss_pred             cCCCHHHHH-hcCCCeEEecCC
Confidence            677899999 899999887765

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=97.50  E-value=0.0017  Score=59.03  Aligned_cols=141  Identities=16%  Similarity=0.113  Sum_probs=90.2

Q ss_pred             HhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec---CchHHHHHHH
Q 024297           95 ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF---GNIGVELAKR  171 (269)
Q Consensus        95 ~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~---G~iG~~~a~~  171 (269)
                      +...+|+|.|.....  +..++  .+|+-++.+.+++                 ..+.|.+|+++|-   +++.+.++..
T Consensus       113 a~~s~vPVINa~~g~--~~HPt--Q~LaDl~Ti~e~~-----------------g~l~g~~va~vGD~~~~~v~~Sl~~~  171 (301)
T TIGR00670       113 AEVSEVPVINAGDGS--NQHPT--QTLLDLYTIYEEF-----------------GRLDGLKIALVGDLKYGRTVHSLAEA  171 (301)
T ss_pred             HhhCCCCEEeCCCCC--CCCcH--HHHHHHHHHHHHh-----------------CCCCCCEEEEEccCCCCcHHHHHHHH
Confidence            444679999986421  23555  5555556555432                 2488999999998   4999999999


Q ss_pred             hccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCcc------------c
Q 024297          172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ------------T  239 (269)
Q Consensus       172 l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~------------t  239 (269)
                      +..+|++|.++.+..-......   .......|.      ......++++.++.+|||...- ...+            .
T Consensus       172 ~a~~g~~v~~~~P~~~~~~~~~---~~~~~~~G~------~v~~~~d~~~a~~~aDvvyt~~-~~~er~~~~~~~~~~~~  241 (301)
T TIGR00670       172 LTRFGVEVYLISPEELRMPKEI---LEELKAKGI------KVRETESLEEVIDEADVLYVTR-IQKERFPDPEEYEKYKG  241 (301)
T ss_pred             HHHcCCEEEEECCccccCCHHH---HHHHHHcCC------EEEEECCHHHHhCCCCEEEECC-ccccccCCHHHHHHHhc
Confidence            9999999999987543111000   000000010      0012478999999999988742 1100            1


Q ss_pred             cCcCCHHHHhhhCCCCcEEEEcc-CCCCc
Q 024297          240 VKLCSSSLSSKSMFFATYVVFMF-QGHGV  267 (269)
Q Consensus       240 ~~li~~~~l~~~mk~ga~lIN~~-RG~~v  267 (269)
                      ..-++++.++ .++++++|.-+. ||.=|
T Consensus       242 ~y~v~~ell~-~a~~~ai~mHclPRg~Ev  269 (301)
T TIGR00670       242 SYGITLERLE-AAKKGVIIMHPLPRVDEI  269 (301)
T ss_pred             CCeECHHHHh-hcCCCCEEECCCCCCccc
Confidence            4567888899 899999888544 65433

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.49  E-value=0.00016  Score=64.50  Aligned_cols=98  Identities=14%  Similarity=0.105  Sum_probs=63.7

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHH-HHhhC
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFE-FASKA  226 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~e-ll~~a  226 (269)
                      ...+++++|+|.|.+|++++..|...|++|++++|+..+......              .....+  ...++++ .+.++
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~--------------~~~~~~~~~~~~~~~~~~~~~  179 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAE--------------RFQRYGEIQAFSMDELPLHRV  179 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------------HHhhcCceEEechhhhcccCc
Confidence            356789999999999999999999999999999987644211000              000000  0112222 23589


Q ss_pred             CEEEEecCCCc--cccC-cCCHHHHhhhCCCCcEEEEccCCC
Q 024297          227 DVVVCCLSLNK--QTVK-LCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       227 Dvvv~~lp~t~--~t~~-li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      |+|+++.|...  .... .++   .+ .++++.+++++.-.+
T Consensus       180 DivInatp~gm~~~~~~~~~~---~~-~l~~~~~v~D~~y~p  217 (270)
T TIGR00507       180 DLIINATSAGMSGNIDEPPVP---AE-KLKEGMVVYDMVYNP  217 (270)
T ss_pred             cEEEECCCCCCCCCCCCCCCC---HH-HcCCCCEEEEeccCC
Confidence            99999999742  2211 222   34 688899999886543

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.46  E-value=0.00013  Score=70.30  Aligned_cols=76  Identities=20%  Similarity=0.264  Sum_probs=51.8

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      +.++.+++++|+|.|.+|+++++.|...|++|++++|+..+......             ..........++.+ +.++|
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~-------------~~~~~~~~~~~~~~-l~~~D  392 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALAS-------------RCQGKAFPLESLPE-LHRID  392 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-------------HhccceechhHhcc-cCCCC
Confidence            45678999999999999999999999999999999987543111000             00000001122222 57899


Q ss_pred             EEEEecCCCc
Q 024297          228 VVVCCLSLNK  237 (269)
Q Consensus       228 vvv~~lp~t~  237 (269)
                      +|++++|...
T Consensus       393 iVInatP~g~  402 (477)
T PRK09310        393 IIINCLPPSV  402 (477)
T ss_pred             EEEEcCCCCC
Confidence            9999999654

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=97.44  E-value=0.00027  Score=65.30  Aligned_cols=86  Identities=14%  Similarity=0.150  Sum_probs=59.6

Q ss_pred             HHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEEecCCCccccCc
Q 024297          165 GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTVKL  242 (269)
Q Consensus       165 G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~~lp~t~~t~~l  242 (269)
                      |..+|..|...|.+|++||++........             .+.....+  ...+..+++++||+|++++|....++.+
T Consensus        32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~-------------~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~V   98 (342)
T PRK12557         32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL-------------WKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEI   98 (342)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHhhHHH-------------HHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHH
Confidence            68889999989999999998764210000             00011111  1246778899999999999955436777


Q ss_pred             CCHHHHhhhCCCCcEEEEccCCC
Q 024297          243 CSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       243 i~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +. .... .+++++++||++-+.
T Consensus        99 l~-~L~~-~L~~g~IVId~ST~~  119 (342)
T PRK12557         99 AK-NILP-HLPENAVICNTCTVS  119 (342)
T ss_pred             HH-HHHh-hCCCCCEEEEecCCC
Confidence            64 4667 889999999998654

>PLN02527 aspartate carbamoyltransferase

Probab=97.44  E-value=0.0022  Score=58.46  Aligned_cols=142  Identities=17%  Similarity=0.087  Sum_probs=90.1

Q ss_pred             HhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecC---chHHHHHHH
Q 024297           95 ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG---NIGVELAKR  171 (269)
Q Consensus        95 ~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G---~iG~~~a~~  171 (269)
                      +....++|.|.....  +..++  .+|+-++.+.+++                 ..+.|.||+++|-+   ++.+.++..
T Consensus       114 a~~~~vPVINa~~g~--~~HPt--Q~LaDl~Ti~e~~-----------------g~l~g~kva~vGD~~~~rv~~Sl~~~  172 (306)
T PLN02527        114 AATAEIPVINAGDGP--GQHPT--QALLDVYTIQREI-----------------GRLDGIKVGLVGDLANGRTVRSLAYL  172 (306)
T ss_pred             HHhCCCCEEECCCCC--CCChH--HHHHHHHHHHHHh-----------------CCcCCCEEEEECCCCCChhHHHHHHH
Confidence            445679999985411  33555  5566666665442                 24889999999965   689999999


Q ss_pred             hccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCc------c------
Q 024297          172 LRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNK------Q------  238 (269)
Q Consensus       172 l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~------~------  238 (269)
                      +..+ |++|.++.+..-......   ....-.+|      .......++++.+++||||....--.+      +      
T Consensus       173 ~~~~~g~~v~~~~P~~~~~~~~~---~~~~~~~g------~~~~~~~d~~~a~~~aDvvyt~~~q~e~~~~~~~~~~~~~  243 (306)
T PLN02527        173 LAKYEDVKIYFVAPDVVKMKDDI---KDYLTSKG------VEWEESSDLMEVASKCDVLYQTRIQRERFGERIDLYEAAR  243 (306)
T ss_pred             HHhcCCCEEEEECCCccCCCHHH---HHHHHHcC------CEEEEEcCHHHHhCCCCEEEECCcchhhhcchHHHHHHhC
Confidence            8887 999999987442111100   00000011      001124789999999999998542100      0      


Q ss_pred             ccCcCCHHHHhhhCCCCcEEEEcc-CCCCc
Q 024297          239 TVKLCSSSLSSKSMFFATYVVFMF-QGHGV  267 (269)
Q Consensus       239 t~~li~~~~l~~~mk~ga~lIN~~-RG~~v  267 (269)
                      ....++++.++ ..+++++|.-+. ||.=|
T Consensus       244 ~~y~v~~~ll~-~a~~~~ivmHclPRg~Ei  272 (306)
T PLN02527        244 GKYIVDKKVMD-VLPKHAVVMHPLPRLDEI  272 (306)
T ss_pred             CCceECHHHHh-ccCCCCEEECCCCCcccc
Confidence            13677888999 899999888654 66433

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.42  E-value=0.00033  Score=64.01  Aligned_cols=94  Identities=15%  Similarity=0.015  Sum_probs=65.3

Q ss_pred             cCCEEEEEecCchHHHHHHHhcc-CCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      .-++++|+|.|..|+..++.+.. +.. +|.+|+|++.+...-...     ..     .........++.++++++||+|
T Consensus       127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~-----~~-----~~~~~v~~~~~~~~av~~ADIV  196 (315)
T PRK06823        127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQY-----AQ-----ALGFAVNTTLDAAEVAHAANLI  196 (315)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHH-----HH-----hcCCcEEEECCHHHHhcCCCEE
Confidence            34699999999999999887764 444 799999987663211100     00     0000000236789999999999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +.+.|   .+..+++.+    .+|||+.++.+|
T Consensus       197 ~taT~---s~~P~~~~~----~l~~G~hi~~iG  222 (315)
T PRK06823        197 VTTTP---SREPLLQAE----DIQPGTHITAVG  222 (315)
T ss_pred             EEecC---CCCceeCHH----HcCCCcEEEecC
Confidence            99955   566888764    578999999997

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.42  E-value=8.5e-05  Score=56.63  Aligned_cols=89  Identities=19%  Similarity=0.176  Sum_probs=57.7

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      -.+.|++|.|||.|.+|..-++.|...|++|+++++.... ..                .....  ....+++-+..+|+
T Consensus         3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~-~~----------------~~i~~--~~~~~~~~l~~~~l   63 (103)
T PF13241_consen    3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEF-SE----------------GLIQL--IRREFEEDLDGADL   63 (103)
T ss_dssp             E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHH-HH----------------TSCEE--EESS-GGGCTTESE
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhh-hh----------------hHHHH--HhhhHHHHHhhheE
Confidence            3589999999999999999999999999999999976310 00                01110  11234455788999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+.+.+.     .-+++.... ..+.--+++|+.
T Consensus        64 V~~at~d-----~~~n~~i~~-~a~~~~i~vn~~   91 (103)
T PF13241_consen   64 VFAATDD-----PELNEAIYA-DARARGILVNVV   91 (103)
T ss_dssp             EEE-SS------HHHHHHHHH-HHHHTTSEEEET
T ss_pred             EEecCCC-----HHHHHHHHH-HHhhCCEEEEEC
Confidence            9988652     224555555 666667777775

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.40  E-value=0.00015  Score=66.25  Aligned_cols=105  Identities=17%  Similarity=0.241  Sum_probs=59.7

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH-hhCCEEEEec
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-SKADVVVCCL  233 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDvvv~~l  233 (269)
                      +|+|||.|.+|..+|..|...|.+|..++|+............+..+..+.  ..........++.+.+ ..+|+|++++
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~Dliiiav   79 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTC--HLPDNISVKSAIDEVLSDNATCIILAV   79 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCC--cCCCCeEEeCCHHHHHhCCCCEEEEEe
Confidence            699999999999999999999999999998643110000000000000000  0000000125666766 5899999999


Q ss_pred             CCCccccCcCCHHHHhh-hCCCCcEEEEccCC
Q 024297          234 SLNKQTVKLCSSSLSSK-SMFFATYVVFMFQG  264 (269)
Q Consensus       234 p~t~~t~~li~~~~l~~-~mk~ga~lIN~~RG  264 (269)
                      |. .++...+..  +.. .+++++.+|...-|
T Consensus        80 ks-~~~~~~l~~--l~~~~l~~~~~vv~~~nG  108 (326)
T PRK14620         80 PT-QQLRTICQQ--LQDCHLKKNTPILICSKG  108 (326)
T ss_pred             CH-HHHHHHHHH--HHHhcCCCCCEEEEEEcC
Confidence            83 344443332  221 34566666665544

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.37  E-value=0.0011  Score=57.38  Aligned_cols=36  Identities=42%  Similarity=0.613  Sum_probs=31.9

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~  184 (269)
                      .++.|++|.|.|||++|+.+|+.|...|.+|+++..
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD   54 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSD   54 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEc
Confidence            578999999999999999999999999997666543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.34  E-value=0.00016  Score=65.00  Aligned_cols=80  Identities=16%  Similarity=0.167  Sum_probs=52.8

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      .+.++++.|||.|.+|++++..|...|+ +|++++|+.++.......   +  ...   ..........++.+.+.++|+
T Consensus       122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~---~--~~~---~~~~~~~~~~~~~~~~~~~Di  193 (282)
T TIGR01809       122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDL---G--VQV---GVITRLEGDSGGLAIEKAAEV  193 (282)
T ss_pred             ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH---h--hhc---CcceeccchhhhhhcccCCCE
Confidence            4678999999999999999999999998 699999986552111100   0  000   000000011234566789999


Q ss_pred             EEEecCCCc
Q 024297          229 VVCCLSLNK  237 (269)
Q Consensus       229 vv~~lp~t~  237 (269)
                      ||++.|...
T Consensus       194 VInaTp~g~  202 (282)
T TIGR01809       194 LVSTVPADV  202 (282)
T ss_pred             EEECCCCCC
Confidence            999988653

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.34  E-value=0.00017  Score=66.95  Aligned_cols=97  Identities=20%  Similarity=0.275  Sum_probs=61.7

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccc-------ccc---ccccC--CCCCHHH
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII-------DDL---VDEKG--CHEDIFE  221 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~--~~~~l~e  221 (269)
                      .+|||||+|-||..+|-.+...|++|+++|.+..+-.         .+.+|.+       ++.   ..+.+  ..+.-.+
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd---------~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~   80 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVD---------KLNRGESYIEEPDLDEVVKEAVESGKLRATTDPE   80 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHH---------HHhCCcceeecCcHHHHHHHHHhcCCceEecChh
Confidence            7999999999999999999999999999998765421         1122210       000   01111  1222224


Q ss_pred             HHhhCCEEEEecCCCccccC-------cCCH-HHHhhhCCCCcEEEE
Q 024297          222 FASKADVVVCCLSLNKQTVK-------LCSS-SLSSKSMFFATYVVF  260 (269)
Q Consensus       222 ll~~aDvvv~~lp~t~~t~~-------li~~-~~l~~~mk~ga~lIN  260 (269)
                      .++.||++++|+| ||-+.+       +.+. +.++..|++|.++|=
T Consensus        81 ~l~~~dv~iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIl  126 (436)
T COG0677          81 ELKECDVFIICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVIL  126 (436)
T ss_pred             hcccCCEEEEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEE
Confidence            4669999999999 665542       1111 123337999987763

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.33  E-value=0.00027  Score=64.55  Aligned_cols=92  Identities=13%  Similarity=0.066  Sum_probs=54.6

Q ss_pred             CEEEEEecCchHHHHHHHhcc-CCC-EEEEEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHHhhCC
Q 024297          154 KTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKAD  227 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aD  227 (269)
                      ++++|||.|..|+.-++.+.. ++. +|.+|+|+..+...-.              ......+    ..++.++++++||
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~--------------~~~~~~~~~v~~~~~~~~av~~aD  194 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFA--------------ARLRDLGVPVVAVDSAEEAVRGAD  194 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHH--------------HHHHCCCTCEEEESSHHHHHTTSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHH--------------HhhccccccceeccchhhhcccCC
Confidence            589999999999999998775 666 7999999865421111              0111111    2468999999999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +|+.+.|.+..+ .+++.+    .+++|+.++.+|..
T Consensus       195 ii~taT~s~~~~-P~~~~~----~l~~g~hi~~iGs~  226 (313)
T PF02423_consen  195 IIVTATPSTTPA-PVFDAE----WLKPGTHINAIGSY  226 (313)
T ss_dssp             EEEE----SSEE-ESB-GG----GS-TT-EEEE-S-S
T ss_pred             EEEEccCCCCCC-ccccHH----HcCCCcEEEEecCC
Confidence            999996644322 788774    57899999999853

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=97.32  E-value=0.0034  Score=57.12  Aligned_cols=140  Identities=16%  Similarity=0.127  Sum_probs=90.8

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec-CchHHHHHHHh
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF-GNIGVELAKRL  172 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~-G~iG~~~a~~l  172 (269)
                      .++..+++|.|..+.   +..++  .+|.-++.+.+.+                 ..+.|.+|+++|= +++.+.++..+
T Consensus       111 ~a~~~~vPVINa~~~---~~HPt--QaL~Dl~Ti~e~~-----------------g~l~g~~v~~vGd~~~v~~Sl~~~l  168 (304)
T TIGR00658       111 LAKYASVPVINGLTD---LFHPC--QALADLLTIIEHF-----------------GKLKGVKVVYVGDGNNVCNSLMLAG  168 (304)
T ss_pred             HHHhCCCCEEECCCC---CCChH--HHHHHHHHHHHHh-----------------CCCCCcEEEEEeCCCchHHHHHHHH
Confidence            345567999999654   45666  5666666665442                 2388999999995 78999999999


Q ss_pred             ccCCCEEEEEcCCCCCccccccc-cchhhhccccccccccccCCCCCHHHHHhhCCEEEEec--CCCc----------cc
Q 024297          173 RPFGVKIIATKRSWASHSQVSCQ-SSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL--SLNK----------QT  239 (269)
Q Consensus       173 ~~~G~~V~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l--p~t~----------~t  239 (269)
                      ..||++|.++.+..-........ -..++..+|      .......++++.++++|||..-.  +...          ..
T Consensus       169 ~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g------~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~  242 (304)
T TIGR00658       169 AKLGMDVVVATPEGYEPDADIVKKAQEIAKENG------GSVELTHDPVEAVKGADVIYTDVWVSMGEEDKKEERLKLFR  242 (304)
T ss_pred             HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC------CeEEEEcCHHHHhCCCCEEEEcCcccCccccccHHHHHHhc
Confidence            99999999998643221100000 000000011      00112478999999999999853  1110          12


Q ss_pred             cCcCCHHHHhhhCCCCcEEEEcc
Q 024297          240 VKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       240 ~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ..-++++.++ .+|++++|.-+.
T Consensus       243 ~y~l~~~~l~-~~~~~~ivmHpl  264 (304)
T TIGR00658       243 PYQVNEELME-LAKPEVIFMHCL  264 (304)
T ss_pred             CCcCCHHHHh-hcCCCCEEECCC
Confidence            4578999999 899999887665

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.32  E-value=0.00057  Score=61.67  Aligned_cols=110  Identities=12%  Similarity=0.016  Sum_probs=63.7

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCC--CccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWA--SHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      .+.++++.|+|.|.+|++++..|...|++ |++++|+..  ........  .+.-..+.............++.+.+..+
T Consensus       123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~--~l~~~~~~~~~~~~d~~~~~~~~~~~~~~  200 (289)
T PRK12548        123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAE--KIKQEVPECIVNVYDLNDTEKLKAEIASS  200 (289)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHH--HHhhcCCCceeEEechhhhhHHHhhhccC
Confidence            47889999999999999999999999996 999999752  11111000  00000000000000011122455667789


Q ss_pred             CEEEEecCCCc--cccC-cCCHHHHhhhCCCCcEEEEccCC
Q 024297          227 DVVVCCLSLNK--QTVK-LCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       227 Dvvv~~lp~t~--~t~~-li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      |+||++.|.--  .+.. .+.  ... .++++.+++++--.
T Consensus       201 DilINaTp~Gm~~~~~~~~~~--~~~-~l~~~~~v~D~vY~  238 (289)
T PRK12548        201 DILVNATLVGMKPNDGETNIK--DTS-VFRKDLVVADTVYN  238 (289)
T ss_pred             CEEEEeCCCCCCCCCCCCCCC--cHH-hcCCCCEEEEecCC
Confidence            99999998642  1111 121  124 56778888877543

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.32  E-value=0.0001  Score=63.11  Aligned_cols=106  Identities=22%  Similarity=0.273  Sum_probs=64.9

Q ss_pred             CCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchh---------------hh---c
Q 024297          142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSAL---------------AV---K  202 (269)
Q Consensus       142 ~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~---------------~~---~  202 (269)
                      .|.......|.+++|.|+|.|.+|..+|+.|...|. +++.+|+..-... ....+.-|               .+   .
T Consensus        10 ~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~s-NL~Rq~l~~~~diG~~Ka~~~~~~l~~~n   88 (202)
T TIGR02356        10 DIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLS-NLQRQILFTEEDVGRPKVEVAAQRLRELN   88 (202)
T ss_pred             hcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEccc-chhhhhccChhhCCChHHHHHHHHHHHhC
Confidence            355555567999999999999999999999999998 8999997532110 00000000               00   0


Q ss_pred             cccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297          203 NGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS  249 (269)
Q Consensus       203 ~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~  249 (269)
                      +...-+........+++.++++++|+|+.+.. +.+++..+++...+
T Consensus        89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~  134 (202)
T TIGR02356        89 SDIQVTALKERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVA  134 (202)
T ss_pred             CCCEEEEehhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence            00000000001122346788999999999875 56677777774444

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK06046 alanine dehydrogenase; Validated

Probab=97.30  E-value=0.00053  Score=62.96  Aligned_cols=93  Identities=18%  Similarity=0.131  Sum_probs=62.0

Q ss_pred             CCEEEEEecCchHHHHHHHhcc-CCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          153 GKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      -+++||||.|.+|+..++.+.. .+. +|.+++|+..+...-...   +  .    +..........++++++. +|+|+
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~---~--~----~~~~~~v~~~~~~~~~l~-aDiVv  198 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVER---M--S----SVVGCDVTVAEDIEEACD-CDILV  198 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHH---H--H----hhcCceEEEeCCHHHHhh-CCEEE
Confidence            4699999999999999998874 466 588899876542111100   0  0    000000001357888887 99999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ++.|.   +..++..+    .+|+|+.+..+|
T Consensus       199 ~aTps---~~P~~~~~----~l~~g~hV~~iG  223 (326)
T PRK06046        199 TTTPS---RKPVVKAE----WIKEGTHINAIG  223 (326)
T ss_pred             EecCC---CCcEecHH----HcCCCCEEEecC
Confidence            99774   45777764    578999988887

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.29  E-value=0.00023  Score=61.00  Aligned_cols=40  Identities=25%  Similarity=0.296  Sum_probs=36.1

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      .-++.|++|.|||.|.+|...++.|...|++|+++++...
T Consensus         5 ~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~   44 (202)
T PRK06718          5 MIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELT   44 (202)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence            4579999999999999999999999999999999987543

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=97.28  E-value=0.0027  Score=58.38  Aligned_cols=138  Identities=17%  Similarity=0.093  Sum_probs=88.3

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecC--chHHHHHHH
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG--NIGVELAKR  171 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G--~iG~~~a~~  171 (269)
                      .+...+|+|.|..+.   +..++  .+|+-++.+.+.+                 ..+.|+||+++|-+  ++.+.++..
T Consensus       118 ~a~~~~vPVINa~~~---~~HPt--QaLaDl~Ti~e~~-----------------g~l~g~~va~vGd~~~~v~~Sl~~~  175 (331)
T PRK02102        118 LAKYSGVPVWNGLTD---EWHPT--QMLADFMTMKEHF-----------------GPLKGLKLAYVGDGRNNMANSLMVG  175 (331)
T ss_pred             HHHhCCCCEEECCCC---CCChH--HHHHHHHHHHHHh-----------------CCCCCCEEEEECCCcccHHHHHHHH
Confidence            345568999998664   45666  5566666655432                 24889999999986  899999999


Q ss_pred             hccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHHhhCCEEEEecCC--Cc-----c--
Q 024297          172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKADVVVCCLSL--NK-----Q--  238 (269)
Q Consensus       172 l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aDvvv~~lp~--t~-----~--  238 (269)
                      +..+|++|.++.+..-......   ...+      .......+    ..++++++++++|||..-+=.  ..     +  
T Consensus       176 ~~~~g~~v~~~~P~~~~~~~~~---~~~~------~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~w~~~~~~~~~~~~~  246 (331)
T PRK02102        176 GAKLGMDVRICAPKELWPEEEL---VALA------REIAKETGAKITITEDPEEAVKGADVIYTDVWVSMGEEDEWEERI  246 (331)
T ss_pred             HHHcCCEEEEECCcccccCHHH---HHHH------HHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCcccCccccchHHHH
Confidence            9999999999986432211000   0000      00001111    237899999999999986310  00     0  


Q ss_pred             ---ccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          239 ---TVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       239 ---t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                         ...-++++.+++.+|++++|.-+.
T Consensus       247 ~~~~~y~vt~ell~~~~~~d~ivmH~l  273 (331)
T PRK02102        247 KLLKPYQVNMDLMKATGNPDVIFMHCL  273 (331)
T ss_pred             HhccCCcCCHHHHhhhcCCCCEEECCC
Confidence               245678888872268898887553

>PRK14031 glutamate dehydrogenase; Provisional

Probab=97.27  E-value=0.00093  Score=63.62  Aligned_cols=113  Identities=17%  Similarity=0.104  Sum_probs=64.6

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCc-----ccccccc--chhhhc-cccccccccccC-CCCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-----SQVSCQS--SALAVK-NGIIDDLVDEKG-CHED  218 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~--~~~~~~-~~~~~~~~~~~~-~~~~  218 (269)
                      |.+|.|++|.|.|+|++|+..|+.|..+|++|++++.+...-     .......  ..+.-. ++.+.......+ ...+
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~  302 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE  302 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence            467999999999999999999999999999999965422110     0000000  000000 111111111001 1112


Q ss_pred             HHHHH-hhCCEEEEecCCCccccCcCCHHHHhhhCCC-Cc-EEEEccCCCC
Q 024297          219 IFEFA-SKADVVVCCLSLNKQTVKLCSSSLSSKSMFF-AT-YVVFMFQGHG  266 (269)
Q Consensus       219 l~ell-~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~-ga-~lIN~~RG~~  266 (269)
                      -++++ ..|||++-|     .+.+.|+.+... .++. |. +++--|-|++
T Consensus       303 ~d~~~~~~cDIliPa-----Al~n~I~~~na~-~l~a~g~~~V~EgAN~P~  347 (444)
T PRK14031        303 GARPWGEKGDIALPS-----ATQNELNGDDAR-QLVANGVIAVSEGANMPS  347 (444)
T ss_pred             CcccccCCCcEEeec-----ccccccCHHHHH-HHHhcCCeEEECCCCCCC
Confidence            23333 378988877     467889998888 7764 43 4555555544

>PLN02342 ornithine carbamoyltransferase

Probab=97.24  E-value=0.0031  Score=58.34  Aligned_cols=138  Identities=15%  Similarity=0.073  Sum_probs=90.2

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec-CchHHHHHHHh
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF-GNIGVELAKRL  172 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~-G~iG~~~a~~l  172 (269)
                      .+...+++|.|..+.   ...++  .+|+-++.+.+.+                 ..+.|+||+++|= .++.+.++..+
T Consensus       157 la~~~~vPVINA~~~---~~HPt--QaLaDl~Ti~e~~-----------------G~l~glkva~vGD~~nva~Sli~~~  214 (348)
T PLN02342        157 LAEYSSVPVINGLTD---YNHPC--QIMADALTIIEHI-----------------GRLEGTKVVYVGDGNNIVHSWLLLA  214 (348)
T ss_pred             HHHhCCCCEEECCCC---CCChH--HHHHHHHHHHHHh-----------------CCcCCCEEEEECCCchhHHHHHHHH
Confidence            345567999998654   44666  5666666665442                 2488999999995 56888999999


Q ss_pred             ccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec----CCCcc--------cc
Q 024297          173 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL----SLNKQ--------TV  240 (269)
Q Consensus       173 ~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l----p~t~~--------t~  240 (269)
                      ..+|++|.++.+..-......   ....-..|     ........+++++++.+|||....    -..+.        ..
T Consensus       215 ~~~G~~v~~~~P~~~~~~~~~---~~~a~~~g-----~~~~~~~~d~~eav~~aDVvy~~~W~s~~~~e~~~~~~~~~~~  286 (348)
T PLN02342        215 AVLPFHFVCACPKGYEPDAKT---VEKARAAG-----ISKIEITNDPAEAVKGADVVYTDVWASMGQKEEAEKRKKAFQG  286 (348)
T ss_pred             HHcCCEEEEECCcccccCHHH---HHHHHHhC-----CCcEEEEcCHHHHhCCCCEEEECCccccccchhhHHHHHhccC
Confidence            999999999987442211000   00000000     001112478999999999999873    11110        23


Q ss_pred             CcCCHHHHhhhCCCCcEEEEcc
Q 024297          241 KLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       241 ~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      .-++++.++ .+|++++|.-+.
T Consensus       287 y~vt~ell~-~ak~~aivMHpL  307 (348)
T PLN02342        287 FQVNEALMK-LAGPQAYFMHCL  307 (348)
T ss_pred             CccCHHHHh-ccCCCcEEeCCC
Confidence            678999999 999999988765

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=97.24  E-value=0.0028  Score=58.42  Aligned_cols=142  Identities=13%  Similarity=0.036  Sum_probs=88.5

Q ss_pred             hhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecC--chHHHHHH
Q 024297           93 NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG--NIGVELAK  170 (269)
Q Consensus        93 ~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G--~iG~~~a~  170 (269)
                      ..+...+|+|.|.-+.   +..++  .+|+-++.+.+..                |..+.|++|+++|=+  ++.+.++.
T Consensus       117 ~~a~~~~vPVINa~~~---~~HPt--QaL~Dl~Ti~e~~----------------g~~l~gl~ia~vGD~~~~v~~Sl~~  175 (334)
T PRK01713        117 ELAEYAGVPVFNGLTD---EFHPT--QMLADVLTMIENC----------------DKPLSEISYVYIGDARNNMGNSLLL  175 (334)
T ss_pred             HHHHhCCCCEEECCCC---CCChH--HHHHHHHHHHHHc----------------CCCcCCcEEEEECCCccCHHHHHHH
Confidence            3455568999999653   45666  5566666655431                335889999999975  68999999


Q ss_pred             HhccCCCEEEEEcCCCCCccccc-cccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec----CC---C------
Q 024297          171 RLRPFGVKIIATKRSWASHSQVS-CQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL----SL---N------  236 (269)
Q Consensus       171 ~l~~~G~~V~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l----p~---t------  236 (269)
                      .+..+|++|.++.+..-...... ..-..++-.+|.      ......++++.++++|||..-.    ..   .      
T Consensus       176 ~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~------~~~~~~d~~~a~~~aDvVyt~~w~sm~~~~~~~~~~~~  249 (334)
T PRK01713        176 IGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGA------RITVTDDIDKAVKGVDFVHTDVWVSMGEPLETWGERIK  249 (334)
T ss_pred             HHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCC------eEEEEcCHHHHhCCCCEEEEcceeecccchhhHHHHHH
Confidence            99999999999986432211000 000000000010      0112478999999999998843    10   0      


Q ss_pred             ccccCcCCHHHHhhhC-CCCcEEEEcc
Q 024297          237 KQTVKLCSSSLSSKSM-FFATYVVFMF  262 (269)
Q Consensus       237 ~~t~~li~~~~l~~~m-k~ga~lIN~~  262 (269)
                      .....-++.+.++ .. |++++|.-+.
T Consensus       250 ~~~~y~v~~ell~-~a~k~~aivmH~l  275 (334)
T PRK01713        250 LLMPYQVTPELMK-RTGNPKVKFMHCL  275 (334)
T ss_pred             hccCCcCCHHHHh-ccCCCCCEEECCC
Confidence            0013457888888 75 7899887654

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.23  E-value=0.00048  Score=59.16  Aligned_cols=96  Identities=16%  Similarity=0.217  Sum_probs=60.1

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      -++.|++|.|||.|.+|..-++.|..+|++|+++++...+......       ..|.+ ....  ..+.  .+.+..+|+
T Consensus         5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~-------~~~~i-~~~~--~~~~--~~dl~~~~l   72 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLA-------EQGGI-TWLA--RCFD--ADILEGAFL   72 (205)
T ss_pred             EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHH-------HcCCE-EEEe--CCCC--HHHhCCcEE
Confidence            5689999999999999999999999999999999976543211100       00100 0000  1111  355788998


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+.+... +    -+|..... ..+...++||+.
T Consensus        73 Vi~at~d-~----~ln~~i~~-~a~~~~ilvn~~  100 (205)
T TIGR01470        73 VIAATDD-E----ELNRRVAH-AARARGVPVNVV  100 (205)
T ss_pred             EEECCCC-H----HHHHHHHH-HHHHcCCEEEEC
Confidence            8877442 2    12444555 555556667653

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.23  E-value=0.0012  Score=62.84  Aligned_cols=36  Identities=25%  Similarity=0.580  Sum_probs=33.6

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEc
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK  183 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~  183 (269)
                      +.++.|++|.|.|||++|+.+|+.|..+|++|+++.
T Consensus       227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavs  262 (445)
T PRK09414        227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCS  262 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            467999999999999999999999999999999983

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=97.23  E-value=0.0037  Score=57.68  Aligned_cols=142  Identities=12%  Similarity=0.038  Sum_probs=89.5

Q ss_pred             HhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec-CchHHHHHHHhc
Q 024297           95 ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF-GNIGVELAKRLR  173 (269)
Q Consensus        95 ~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~-G~iG~~~a~~l~  173 (269)
                      +...+|+|.|.-+.   ...++  .+|+-++.+.+.+         |     .+..+.|.+|+++|= .++.+.++..+.
T Consensus       115 a~~~~vPVINa~~~---~~HPt--QaLaDl~Ti~e~~---------g-----~g~~l~glkv~~vGD~~~v~~Sl~~~~~  175 (338)
T PRK02255        115 AKYATVPVINGMSD---YNHPT--QELGDLFTMIEHL---------P-----EGKKLEDCKVVFVGDATQVCVSLMFIAT  175 (338)
T ss_pred             HHhCCCCEEECCCC---CCChH--HHHHHHHHHHHHh---------C-----CCCCCCCCEEEEECCCchHHHHHHHHHH
Confidence            44567999996553   44666  5555666655432         0     123589999999996 789999999999


Q ss_pred             cCCCEEEEEcCCCCCccccccccc-hhhhccccccccccccCCCCCHHHHHhhCCEEEEec---CCCc-----c------
Q 024297          174 PFGVKIIATKRSWASHSQVSCQSS-ALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL---SLNK-----Q------  238 (269)
Q Consensus       174 ~~G~~V~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l---p~t~-----~------  238 (269)
                      .+|++|.++.+..-.......... ..+-.+|.      ......+++++++++|||..-.   ....     +      
T Consensus       176 ~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~------~~~~~~d~~eav~~aDvvy~~~w~~~~~~~~~~~~r~~~~~  249 (338)
T PRK02255        176 KMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGG------SVLVTDDVDEAVKDADFVYTDVWYGLYDAELSEEERMAIFY  249 (338)
T ss_pred             hCCCEEEEECCCccccCHHHHHHHHHHHHhcCC------eEEEEcCHHHHhCCCCEEEEcccHhhccchhhHHHHHHhhC
Confidence            999999999874321100000000 00000010      0112478999999999999843   1111     0      


Q ss_pred             ccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          239 TVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       239 t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      -..-++++.++ .+|++++|.-+.
T Consensus       250 ~~y~v~~ell~-~a~~~~ivmHpL  272 (338)
T PRK02255        250 PKYQVTPELMA-KAGPHAKFMHCL  272 (338)
T ss_pred             CCceECHHHHh-ccCCCCEEeCCC
Confidence            13678999999 899999887765

>PLN02477 glutamate dehydrogenase

Probab=97.19  E-value=0.0016  Score=61.46  Aligned_cols=102  Identities=23%  Similarity=0.254  Sum_probs=62.0

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccc-ccc---------cc-C-C
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDD-LVD---------EK-G-C  215 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------~~-~-~  215 (269)
                      +.++.|++|.|.|||++|+.+|+.|...|++|+++..+...          ...++|+..+ +..         .+ . .
T Consensus       201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~----------iy~~~GLD~~~L~~~k~~~g~l~~~~~a~  270 (410)
T PLN02477        201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGA----------VKNENGLDIPALRKHVAEGGGLKGFPGGD  270 (410)
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCe----------EECCCCCCHHHHHHHHHhcCchhccccce
Confidence            46799999999999999999999999999999965432210          1111222110 100         00 0 0


Q ss_pred             CCCHHHH-HhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297          216 HEDIFEF-ASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       216 ~~~l~el-l~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      ..+-+++ ..+|||++-|.     ..+.|+++... .++ -.+++--+=|++
T Consensus       271 ~i~~~e~l~~~~DvliP~A-----l~~~I~~~na~-~i~-ak~I~egAN~p~  315 (410)
T PLN02477        271 PIDPDDILVEPCDVLIPAA-----LGGVINKENAA-DVK-AKFIVEAANHPT  315 (410)
T ss_pred             EecCccceeccccEEeecc-----ccccCCHhHHH-HcC-CcEEEeCCCCCC
Confidence            1111222 33899998883     55788888888 664 345555544444

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.19  E-value=0.00087  Score=61.54  Aligned_cols=94  Identities=17%  Similarity=0.119  Sum_probs=67.1

Q ss_pred             CCEEEEEecCchHHHHHHHhcc-CCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          153 GKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      -++++|||.|..++.-++.++. ++. +|.+|+|++.....-...   +.      ...........+.+++++.||+|+
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~---l~------~~~~~~v~a~~s~~~av~~aDiIv  200 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAAR---LR------KRGGEAVGAADSAEEAVEGADIVV  200 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHH---HH------hhcCccceeccCHHHHhhcCCEEE
Confidence            3589999999999999999885 676 799999987653221100   00      001111124578899999999999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      .+.|.   +..++..+    .++||+.+..+|
T Consensus       201 t~T~s---~~Pil~~~----~l~~G~hI~aiG  225 (330)
T COG2423         201 TATPS---TEPVLKAE----WLKPGTHINAIG  225 (330)
T ss_pred             EecCC---CCCeecHh----hcCCCcEEEecC
Confidence            99764   44888774    567999999887

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=97.18  E-value=0.0041  Score=59.02  Aligned_cols=141  Identities=15%  Similarity=0.102  Sum_probs=88.9

Q ss_pred             hHhcCCcEEEecCC-CCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec---CchHHHHH
Q 024297           94 AATRCGIKVARIPG-DVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF---GNIGVELA  169 (269)
Q Consensus        94 ~~~~~gI~v~n~~~-~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~---G~iG~~~a  169 (269)
                      .+...+|+|.|..+ .   +..++  .+|+-++.+..++         |.    .+..+.|+||+++|-   +++.+.++
T Consensus       199 ~A~~s~vPVINAgdg~---~~HPt--QaLaDl~Ti~E~~---------g~----~g~~l~G~kIa~vGD~~~~rv~~Sl~  260 (429)
T PRK11891        199 FARATNLPVINGGDGP---GEHPS--QALLDLYTIQREF---------SR----LGKIVDGAHIALVGDLKYGRTVHSLV  260 (429)
T ss_pred             HHHhCCCCEEECCCCC---CCCcH--HHHHHHHHHHHHh---------Cc----cCCCcCCCEEEEECcCCCChHHHHHH
Confidence            34566899999873 4   34555  5555555555432         10    123488999999997   59999999


Q ss_pred             HHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCcc----------
Q 024297          170 KRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ----------  238 (269)
Q Consensus       170 ~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~----------  238 (269)
                      ..+..+ |++|.++.+..-......   ......+|.      ......+++++++++|||....--.+.          
T Consensus       261 ~~la~~~G~~v~l~~P~~~~~~~~~---~~~~~~~G~------~v~~~~d~~eav~~ADVVYt~~~q~er~~~~~~~~~~  331 (429)
T PRK11891        261 KLLALYRGLKFTLVSPPTLEMPAYI---VEQISRNGH------VIEQTDDLAAGLRGADVVYATRIQKERFADESFEGYT  331 (429)
T ss_pred             HHHHHhcCCEEEEECCCccccCHHH---HHHHHhcCC------eEEEEcCHHHHhCCCCEEEEcCchhhcccCHHHHHhc
Confidence            998876 999999987442111000   000000110      011247899999999999985421000          


Q ss_pred             ccCcCCHHHHhhh-CCCCcEEEEcc
Q 024297          239 TVKLCSSSLSSKS-MFFATYVVFMF  262 (269)
Q Consensus       239 t~~li~~~~l~~~-mk~ga~lIN~~  262 (269)
                      ...-++++.++ . .|++++|.-+.
T Consensus       332 ~~y~vt~ell~-~~ak~dai~MHcL  355 (429)
T PRK11891        332 PDFQINQALVD-AVCKPDTLIMHPL  355 (429)
T ss_pred             cCCcCCHHHHh-CccCCCcEEECCC
Confidence            13567899998 7 89999888654

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.18  E-value=0.00087  Score=60.90  Aligned_cols=90  Identities=11%  Similarity=0.056  Sum_probs=63.6

Q ss_pred             CCEEEEEecCchHHHHHHHhcc-CCC-EEEEEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHHhhC
Q 024297          153 GKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKA  226 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~a  226 (269)
                      -+++||||.|..|+..++.+.. +.. +|.+|+|+..+...-..             ......+    ...+.++++.+|
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~-------------~~~~~~~~~v~~~~~~~eav~~a  183 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAE-------------RFSKEFGVDIRPVDNAEAALRDA  183 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHH-------------HHHHhcCCcEEEeCCHHHHHhcC
Confidence            5799999999999988887775 555 79999998765321100             0111111    236799999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|+.+.|   .+..++..+    .+|||+.+.-+|
T Consensus       184 DIV~taT~---s~~P~~~~~----~l~pg~hV~aiG  212 (301)
T PRK06407        184 DTITSITN---SDTPIFNRK----YLGDEYHVNLAG  212 (301)
T ss_pred             CEEEEecC---CCCcEecHH----HcCCCceEEecC
Confidence            99999865   556888774    467887776665

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.14  E-value=0.00039  Score=64.16  Aligned_cols=105  Identities=18%  Similarity=0.214  Sum_probs=65.2

Q ss_pred             CCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchh-----------------h---
Q 024297          142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSAL-----------------A---  200 (269)
Q Consensus       142 ~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~-----------------~---  200 (269)
                      .|.......|.+++|.|||.|.+|..+|+.|...|. +++.+|+..-.. .......-|                 .   
T Consensus        13 ~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~-sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~   91 (338)
T PRK12475         13 GIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEW-SNLQRQQLYTEEDAKQKKPKAIAAKEHLRK   91 (338)
T ss_pred             hcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccc-cccCccccccHHHccCCccHHHHHHHHHHH
Confidence            344444567999999999999999999999999998 899999754110 000000000                 0   


Q ss_pred             hccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHH
Q 024297          201 VKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLS  248 (269)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l  248 (269)
                      ..++..-..........+++++++++|+|+.+.- +.+++.++|.-..
T Consensus        92 inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D-~~~~r~~in~~~~  138 (338)
T PRK12475         92 INSEVEIVPVVTDVTVEELEELVKEVDLIIDATD-NFDTRLLINDLSQ  138 (338)
T ss_pred             HCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCC-CHHHHHHHHHHHH
Confidence            0000000000001122457889999999999984 6678888777443

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=97.12  E-value=0.00099  Score=62.32  Aligned_cols=102  Identities=23%  Similarity=0.311  Sum_probs=67.5

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccc-----------ccccccC-C
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIID-----------DLVDEKG-C  215 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~-~  215 (269)
                      +..+.|+||.|=|+|++|+.+|+.|...|.+|++++.+..--          ..++|+..           ......+ .
T Consensus       202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i----------~~~~Gld~~~l~~~~~~~~~v~~~~ga~  271 (411)
T COG0334         202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGI----------YDEDGLDVEALLELKERRGSVAEYAGAE  271 (411)
T ss_pred             CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCce----------ecCCCCCHHHHHHHhhhhhhHHhhcCce
Confidence            344999999999999999999999999999999998765410          00111100           0111111 2


Q ss_pred             CCCHHHHHh-hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297          216 HEDIFEFAS-KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       216 ~~~l~ell~-~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      ..+-++++. .|||++=|     .+.+.|+.+... .++.. +++--+-|++
T Consensus       272 ~i~~~e~~~~~cDIl~Pc-----A~~n~I~~~na~-~l~ak-~V~EgAN~P~  316 (411)
T COG0334         272 YITNEELLEVDCDILIPC-----ALENVITEDNAD-QLKAK-IVVEGANGPT  316 (411)
T ss_pred             EccccccccccCcEEccc-----ccccccchhhHH-Hhhhc-EEEeccCCCC
Confidence            222255555 79988776     577889888888 77766 6665555554

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.12  E-value=0.00051  Score=66.14  Aligned_cols=106  Identities=12%  Similarity=0.103  Sum_probs=63.0

Q ss_pred             CEEEEEecCchHHHHHHHhccC--CCEEEEEcCCCCCccccccccchhhhccccccccccc-----cCCCCCHHHHHhhC
Q 024297          154 KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-----KGCHEDIFEFASKA  226 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~ell~~a  226 (269)
                      .+|+|||.|.+|..+|-.|...  |++|+++|.+..+-...-.....+  ...+..++..+     .....++.+.+++|
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~--~e~gl~ell~~~~~~~l~~t~~~~~~i~~a   79 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPI--YEPGLDEVVKQCRGKNLFFSTDVEKHVAEA   79 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCcc--CCCCHHHHHHHhhcCCEEEEcCHHHHHhcC
Confidence            5799999999999999999865  689999998765421110000000  00011112111     11225677889999


Q ss_pred             CEEEEecCCCcccc------------CcCCH-HHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTV------------KLCSS-SLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~------------~li~~-~~l~~~mk~ga~lIN~~  262 (269)
                      |++++|+| ||...            ++.+. +.+...++++.++|.-+
T Consensus        80 dvi~I~V~-TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~S  127 (473)
T PLN02353         80 DIVFVSVN-TPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS  127 (473)
T ss_pred             CEEEEEeC-CCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeC
Confidence            99999998 44321            11111 12333688899888643

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.11  E-value=0.0005  Score=59.32  Aligned_cols=92  Identities=24%  Similarity=0.266  Sum_probs=58.3

Q ss_pred             CEEEEEecCchHHHHHHHhcc--CCCE-EEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCE
Q 024297          154 KTVFILGFGNIGVELAKRLRP--FGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV  228 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~--~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDv  228 (269)
                      .+|||||+|.||+.+.+.++.  .+++ |.+||++.++..                 +......  ...++++++++.|+
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~-----------------~~~~~~~~~~~s~ide~~~~~Dl   63 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAK-----------------ELEASVGRRCVSDIDELIAEVDL   63 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHH-----------------HHHhhcCCCccccHHHHhhccce
Confidence            379999999999999999984  4565 888888766521                 1112222  23678899999998


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCcc
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVS  268 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vd  268 (269)
                      |+=|.... ..+.+    ..+ .|+.|-=+|-++=|.+.|
T Consensus        64 vVEaAS~~-Av~e~----~~~-~L~~g~d~iV~SVGALad   97 (255)
T COG1712          64 VVEAASPE-AVREY----VPK-ILKAGIDVIVMSVGALAD   97 (255)
T ss_pred             eeeeCCHH-HHHHH----hHH-HHhcCCCEEEEechhccC
Confidence            88886421 22222    122 455555455555555544

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.09  E-value=0.0011  Score=60.87  Aligned_cols=95  Identities=15%  Similarity=0.078  Sum_probs=61.7

Q ss_pred             cCCEEEEEecCchHHHHHHHhcc-CCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      ..++++|||.|.+|+..+..+.. .+. +|.+|+|+..+...-...   +.-..|      .......++++++.++|+|
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~---~~~~~g------~~v~~~~d~~~al~~aDiV  201 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAAD---LRAELG------IPVTVARDVHEAVAGADII  201 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHH---HhhccC------ceEEEeCCHHHHHccCCEE
Confidence            35799999999999998888774 564 799999986652111000   000000      0001246789999999999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +++.|.   ...++..+    .+++|+.+..++
T Consensus       202 i~aT~s---~~p~i~~~----~l~~g~~v~~vg  227 (330)
T PRK08291        202 VTTTPS---EEPILKAE----WLHPGLHVTAMG  227 (330)
T ss_pred             EEeeCC---CCcEecHH----HcCCCceEEeeC
Confidence            999764   45777663    367787665543

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.09  E-value=0.00098  Score=62.49  Aligned_cols=100  Identities=18%  Similarity=0.158  Sum_probs=65.8

Q ss_pred             CCEEEEEecCchHHHHHHHhcc-CC-C-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          153 GKTVFILGFGNIGVELAKRLRP-FG-V-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~-~G-~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      -++++|||.|..++..++.+.. +. . +|.+|+|+..+...-... ..-.++ |.     .......+.++++++||+|
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~-~~~~~~-~~-----~~v~~~~s~~eav~~ADIV  227 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATW-VAETYP-QI-----TNVEVVDSIEEVVRGSDIV  227 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHH-HHHhcC-CC-----ceEEEeCCHHHHHcCCCEE
Confidence            4699999999999999998876 42 4 799999987653211000 000000 00     0011236899999999999


Q ss_pred             EEecCCCc---cccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          230 VCCLSLNK---QTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       230 v~~lp~t~---~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +.+.+.+.   .+..++..+    .+|+|+.++.++.
T Consensus       228 vtaT~s~~~~~s~~Pv~~~~----~lkpG~hv~~ig~  260 (379)
T PRK06199        228 TYCNSGETGDPSTYPYVKRE----WVKPGAFLLMPAA  260 (379)
T ss_pred             EEccCCCCCCCCcCcEecHH----HcCCCcEEecCCc
Confidence            99976433   345788763    5788998887764

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=97.09  E-value=0.0047  Score=56.92  Aligned_cols=141  Identities=12%  Similarity=0.031  Sum_probs=88.5

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecC--chHHHHHHH
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG--NIGVELAKR  171 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G--~iG~~~a~~  171 (269)
                      .+...+|+|.|.-+.   +..++  .+|+-++.+.+.+               . ..+.|++|+++|-+  ++.+.++..
T Consensus       117 ~a~~s~vPVINa~~~---~~HPt--QaL~Dl~Ti~e~~---------------~-g~l~g~kia~vGD~~~~v~~Sl~~~  175 (332)
T PRK04284        117 LAEYSGVPVWNGLTD---EDHPT--QVLADFLTAKEHL---------------K-KPYKDIKFTYVGDGRNNVANALMQG  175 (332)
T ss_pred             HHHhCCCCEEECCCC---CCChH--HHHHHHHHHHHHh---------------c-CCcCCcEEEEecCCCcchHHHHHHH
Confidence            345567999997553   45666  5666666665431               1 24889999999974  899999999


Q ss_pred             hccCCCEEEEEcCCCCCccccc-cccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCC--C-----------c
Q 024297          172 LRPFGVKIIATKRSWASHSQVS-CQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL--N-----------K  237 (269)
Q Consensus       172 l~~~G~~V~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~--t-----------~  237 (269)
                      +..+|++|.++.+..-...... ..-..++-..|      .......+++++++++|||..-.=.  .           .
T Consensus       176 ~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g------~~~~~~~d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~~  249 (332)
T PRK04284        176 AAIMGMDFHLVCPKELNPDDELLNKCKEIAAETG------GKITITDDIDEGVKGSDVIYTDVWVSMGEPDEVWEERIKL  249 (332)
T ss_pred             HHHcCCEEEEECCccccCCHHHHHHHHHHHHHcC------CeEEEEcCHHHHhCCCCEEEECCcccCccchhhHHHHHHh
Confidence            9999999999987432211000 00000000001      0011247899999999999985210  0           0


Q ss_pred             cccCcCCHHHHhhhCC-CCcEEEEcc
Q 024297          238 QTVKLCSSSLSSKSMF-FATYVVFMF  262 (269)
Q Consensus       238 ~t~~li~~~~l~~~mk-~ga~lIN~~  262 (269)
                      -...-++++.++ .++ ++++|.-+.
T Consensus       250 ~~~y~v~~e~l~-~a~~~~~ivmHpl  274 (332)
T PRK04284        250 LKPYQVNKEMMK-KTGNPNAIFEHCL  274 (332)
T ss_pred             ccCCcCCHHHHh-hcCCCCcEEECCC
Confidence            124567899999 886 588887654

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=97.07  E-value=0.00065  Score=59.91  Aligned_cols=107  Identities=16%  Similarity=0.217  Sum_probs=64.6

Q ss_pred             CCCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhh---------------hc--
Q 024297          141 KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALA---------------VK--  202 (269)
Q Consensus       141 ~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~---------------~~--  202 (269)
                      ..|.......|..++|+|+|.|.+|..+++.|...|. +++.+|...-.. .....+.-+.               +.  
T Consensus        20 ~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~-sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~l   98 (245)
T PRK05690         20 RGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSL-SNLQRQVLHDDATIGQPKVESARAALARI   98 (245)
T ss_pred             hhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECc-chhhhhhcCChhhCCChHHHHHHHHHHHH
Confidence            3465545578999999999999999999999999998 788888543221 0000000000               00  


Q ss_pred             c-ccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297          203 N-GIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS  249 (269)
Q Consensus       203 ~-~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~  249 (269)
                      | +.--..........++.++++++|+|+.++- +.+++..+++...+
T Consensus        99 np~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~  145 (245)
T PRK05690         99 NPHIAIETINARLDDDELAALIAGHDLVLDCTD-NVATRNQLNRACFA  145 (245)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHH
Confidence            0 0000000001112346678999999999975 66777777775444

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.04  E-value=0.00054  Score=64.09  Aligned_cols=95  Identities=16%  Similarity=0.248  Sum_probs=55.5

Q ss_pred             EEEEecCchHHHHHHHhccCC-C-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297          156 VFILGFGNIGVELAKRLRPFG-V-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (269)
Q Consensus       156 vgIiG~G~iG~~~a~~l~~~G-~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l  233 (269)
                      |+|+|.|.+|+.+++.|...+ . +|++.+|+..+.......     .....+....-......+|.++++++|+|++|+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~-----~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~   75 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEK-----LLGDRVEAVQVDVNDPESLAELLRGCDVVINCA   75 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT-------TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhh-----ccccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence            689999999999999999775 5 899999987652111100     000000111111113345889999999999999


Q ss_pred             CCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          234 SLNKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       234 p~t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      |..      .+...++..++.|.-.|++
T Consensus        76 gp~------~~~~v~~~~i~~g~~yvD~   97 (386)
T PF03435_consen   76 GPF------FGEPVARACIEAGVHYVDT   97 (386)
T ss_dssp             SGG------GHHHHHHHHHHHT-EEEES
T ss_pred             ccc------hhHHHHHHHHHhCCCeecc
Confidence            733      3344444345566666664

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=97.01  E-value=0.00031  Score=61.14  Aligned_cols=104  Identities=20%  Similarity=0.225  Sum_probs=63.9

Q ss_pred             CCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccc--------------
Q 024297          142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGII--------------  206 (269)
Q Consensus       142 ~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  206 (269)
                      .|.......|.+++|.|+|.|.+|..+|+.|...|. +++.+|...-.. .....+  +.+...++              
T Consensus        10 ~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~-sNL~Rq--~l~~~~diG~~Ka~~~~~~l~~   86 (228)
T cd00757          10 EIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVEL-SNLQRQ--ILHTEADVGQPKAEAAAERLRA   86 (228)
T ss_pred             hcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcC-cccccc--cccChhhCCChHHHHHHHHHHH
Confidence            355444567999999999999999999999999999 788887543211 000000  00000000              


Q ss_pred             --c----ccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297          207 --D----DLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS  249 (269)
Q Consensus       207 --~----~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~  249 (269)
                        +    .........+++.++++++|+|+.++. +++++..+++...+
T Consensus        87 ~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~  134 (228)
T cd00757          87 INPDVEIEAYNERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK  134 (228)
T ss_pred             hCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH
Confidence              0    000000112456788999999999987 66777777764433

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.99  E-value=0.0013  Score=59.15  Aligned_cols=97  Identities=21%  Similarity=0.253  Sum_probs=65.5

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccC------CCCCHHH
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG------CHEDIFE  221 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~e  221 (269)
                      ....|+++.|+|.|..+++++..|+..|+ +|++++|+.++.....              +.+...+      ...+++.
T Consensus       122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La--------------~~~~~~~~~~~~~~~~~~~~  187 (283)
T COG0169         122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELA--------------DLFGELGAAVEAAALADLEG  187 (283)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH--------------HHhhhccccccccccccccc
Confidence            45679999999999999999999999996 7999999876632111              1111111      1122222


Q ss_pred             HHhhCCEEEEecCCCcccc---CcCCHHHHhhhCCCCcEEEEccCC
Q 024297          222 FASKADVVVCCLSLNKQTV---KLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       222 ll~~aDvvv~~lp~t~~t~---~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                       +.++|+||++.|.--.-.   .+++   .+ .++++.++.++--.
T Consensus       188 -~~~~dliINaTp~Gm~~~~~~~~~~---~~-~l~~~~~v~D~vY~  228 (283)
T COG0169         188 -LEEADLLINATPVGMAGPEGDSPVP---AE-LLPKGAIVYDVVYN  228 (283)
T ss_pred             -ccccCEEEECCCCCCCCCCCCCCCc---HH-hcCcCCEEEEeccC
Confidence             117999999999764432   1444   45 78888888877544

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=96.99  E-value=0.0023  Score=58.64  Aligned_cols=85  Identities=15%  Similarity=0.198  Sum_probs=54.4

Q ss_pred             CEEEEEecCchHHHHHHHhccC-CCEEEE-EcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      -+|||||+|+||+.+++.+... ++++.+ ++++......                .... .....+.++++.+.|+|++
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~----------------~~~~-v~~~~d~~e~l~~iDVViI   66 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD----------------TETP-VYAVADDEKHLDDVDVLIL   66 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh----------------hcCC-ccccCCHHHhccCCCEEEE
Confidence            5899999999999999999865 899776 5665322100                0011 1123467777889999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      |.|...   ++  ..... .|+.|.-+|..
T Consensus        67 ctPs~t---h~--~~~~~-~L~aG~NVV~s   90 (324)
T TIGR01921        67 CMGSAT---DI--PEQAP-YFAQFANTVDS   90 (324)
T ss_pred             cCCCcc---CH--HHHHH-HHHcCCCEEEC
Confidence            988432   21  22333 56666655554

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.98  E-value=0.00062  Score=62.89  Aligned_cols=106  Identities=19%  Similarity=0.273  Sum_probs=65.5

Q ss_pred             CCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccc-----h------------hhhc-
Q 024297          142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSS-----A------------LAVK-  202 (269)
Q Consensus       142 ~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~-----~------------~~~~-  202 (269)
                      .|.......|..++|.|+|.|.+|..+|+.|...|. +|+.+|...-.. .......     +            ..+. 
T Consensus        13 ~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~-sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~   91 (339)
T PRK07688         13 PIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEW-SNLQRQQLYTESDVKNNLPKAVAAKKRLEE   91 (339)
T ss_pred             hcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCH-HHcCccccccHHHhcCCCcHHHHHHHHHHH
Confidence            355444567999999999999999999999999999 899999753110 0000000     0            0000 


Q ss_pred             -ccccc-ccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297          203 -NGIID-DLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS  249 (269)
Q Consensus       203 -~~~~~-~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~  249 (269)
                       |-.+. ..........++.++++++|+|+.+.- +.+++.+++....+
T Consensus        92 inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~D-n~~~r~~ln~~~~~  139 (339)
T PRK07688         92 INSDVRVEAIVQDVTAEELEELVTGVDLIIDATD-NFETRFIVNDAAQK  139 (339)
T ss_pred             HCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHHHHH
Confidence             10000 000001123456788999999998876 66788888875544

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=96.98  E-value=0.0014  Score=59.60  Aligned_cols=99  Identities=18%  Similarity=0.100  Sum_probs=57.9

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhc--cccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVK--NGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      ++|+|||.|.||..+|..|...|.+|+++.|+....   ... .+..+.  +|.  ..........+. +.+..+|+|++
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~---~~~-~g~~~~~~~~~--~~~~~~~~~~~~-~~~~~~D~vil   78 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEA---VRE-NGLQVDSVHGD--FHLPPVQAYRSA-EDMPPCDWVLV   78 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHH---HHh-CCeEEEeCCCC--eeecCceEEcch-hhcCCCCEEEE
Confidence            689999999999999999999999999999864221   100 000000  010  000000001222 34678999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +++.. ++...+.. ... .+++++.++...
T Consensus        79 avK~~-~~~~~~~~-l~~-~~~~~~~iv~lq  106 (313)
T PRK06249         79 GLKTT-ANALLAPL-IPQ-VAAPDAKVLLLQ  106 (313)
T ss_pred             EecCC-ChHhHHHH-Hhh-hcCCCCEEEEec
Confidence            99844 44433222 333 566777777653

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.95  E-value=0.013  Score=53.41  Aligned_cols=126  Identities=13%  Similarity=-0.035  Sum_probs=85.2

Q ss_pred             CcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec---CchHHHHHHHhccC
Q 024297           99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF---GNIGVELAKRLRPF  175 (269)
Q Consensus        99 gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~---G~iG~~~a~~l~~~  175 (269)
                      .++|.|.....  +..++  .+|+-++.+...+                 ..+.|.+|+++|=   +++.+.++..+..+
T Consensus       124 ~vPvINag~g~--~~HPt--QaLaDl~Ti~e~~-----------------g~l~g~~va~vGD~~~~rv~~Sl~~~~a~~  182 (310)
T PRK13814        124 SGVVINAGDGN--HQHPS--QALIDLMTIKQHK-----------------PHWNKLCVTIIGDIRHSRVANSLMDGLVTM  182 (310)
T ss_pred             CCCeEECCcCC--CCCch--HHHHHHHHHHHHh-----------------CCcCCcEEEEECCCCCCcHHHHHHHHHHHc
Confidence            69999984321  34555  5555666555432                 2378999999997   69999999999999


Q ss_pred             CC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCC----c-c----c--cCcC
Q 024297          176 GV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLN----K-Q----T--VKLC  243 (269)
Q Consensus       176 G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t----~-~----t--~~li  243 (269)
                      |+ +|.++.+..-..             +.   ..........+++++++.+|||...-=-.    . .    .  ...+
T Consensus       183 g~~~v~~~~P~~~~p-------------~~---~~~~~~~~~~d~~ea~~~aDvvy~~~~~~er~~~~~~~~~~~~~y~v  246 (310)
T PRK13814        183 GVPEIRLVGPSSLLP-------------DK---VGNDSIKKFTELKPSLLNSDVIVTLRLQKERHDNSVDIDAFRGSFRL  246 (310)
T ss_pred             CCCEEEEeCCcccCc-------------Cc---cccceEEEEcCHHHHhCCCCEEEECccccccccchhHHHHhCCCccc
Confidence            99 999998643210             00   00011113478999999999998732111    0 1    1  2677


Q ss_pred             CHHHHhhhCCCCcEEEEcc
Q 024297          244 SSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       244 ~~~~l~~~mk~ga~lIN~~  262 (269)
                      +.+.++ .+|++++|.-+.
T Consensus       247 ~~~~l~-~a~~~~i~mHcL  264 (310)
T PRK13814        247 TPEKLY-SAKPDAIVMHPG  264 (310)
T ss_pred             CHHHHH-hcCCCCEEECCC
Confidence            899999 899999988765

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=96.95  E-value=0.0022  Score=50.02  Aligned_cols=96  Identities=20%  Similarity=0.182  Sum_probs=54.9

Q ss_pred             EEEEEe-cCchHHHHHHHhccC-CCEEEEE-cCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          155 TVFILG-FGNIGVELAKRLRPF-GVKIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       155 ~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      +++|+| .|.+|+.+++.+... ++++.++ +++........       ..++.+...........+++  ..++|+|++
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~DvV~~   71 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVS-------EAGPHLKGEVVLELEPEDFE--ELAVDIVFL   71 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHH-------HHCcccccccccccccCChh--hcCCCEEEE
Confidence            589999 599999999999875 8887777 43221111100       00100000000011123333  258999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ++|.. .+...+.. ... .+++|.++|+++
T Consensus        72 ~~~~~-~~~~~~~~-~~~-~~~~g~~viD~s   99 (122)
T smart00859       72 ALPHG-VSKEIAPL-LPK-AAEAGVKVIDLS   99 (122)
T ss_pred             cCCcH-HHHHHHHH-HHh-hhcCCCEEEECC
Confidence            99954 33332221 234 679999999987

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=96.94  E-value=0.0074  Score=55.66  Aligned_cols=142  Identities=17%  Similarity=0.060  Sum_probs=89.1

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecC--chHHHHHHH
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG--NIGVELAKR  171 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G--~iG~~~a~~  171 (269)
                      .+...+|+|.|.-+.   ...++  .+|+-++.+.+.+               .+..+.|.+|+++|-+  ++.+.++..
T Consensus       117 ~a~~~~vPVINa~~~---~~HPt--QaLaDl~Ti~e~~---------------g~~~l~g~~ia~vGD~~~~v~~Sl~~~  176 (336)
T PRK03515        117 LAEYAGVPVWNGLTN---EFHPT--QLLADLLTMQEHL---------------PGKAFNEMTLAYAGDARNNMGNSLLEA  176 (336)
T ss_pred             HHHhCCCCEEECCCC---CCChH--HHHHHHHHHHHHh---------------CCCCcCCCEEEEeCCCcCcHHHHHHHH
Confidence            345568999998553   45666  5666666665432               1135889999999975  789999999


Q ss_pred             hccCCCEEEEEcCCCCCcccccc-ccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCC-------------Cc
Q 024297          172 LRPFGVKIIATKRSWASHSQVSC-QSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL-------------NK  237 (269)
Q Consensus       172 l~~~G~~V~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~-------------t~  237 (269)
                      +..+|++|.++.+..-....... .-..++-.+|.      ......+++++++++|||....=.             ..
T Consensus       177 ~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~------~i~~~~d~~ea~~~aDvvytd~W~sm~~~~~~~~er~~~  250 (336)
T PRK03515        177 AALTGLDLRLVAPKACWPEAALVTECRALAQKNGG------NITLTEDIAEGVKGADFIYTDVWVSMGEPKEVWAERIAL  250 (336)
T ss_pred             HHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCC------eEEEEcCHHHHhCCCCEEEecCcccCcchhHHHHHHHHh
Confidence            99999999999874322110000 00000000110      011247899999999999985200             11


Q ss_pred             cccCcCCHHHHhhh-CCCCcEEEEcc
Q 024297          238 QTVKLCSSSLSSKS-MFFATYVVFMF  262 (269)
Q Consensus       238 ~t~~li~~~~l~~~-mk~ga~lIN~~  262 (269)
                      ....-++++.++ . .|++++|.-+.
T Consensus       251 ~~~y~v~~~lm~-~a~k~~~ivmHcL  275 (336)
T PRK03515        251 LRPYQVNSKMMQ-LTGNPQVKFLHCL  275 (336)
T ss_pred             ccCCccCHHHHh-cccCCCCEEECCC
Confidence            124567888888 6 47889887664

>PTZ00117 malate dehydrogenase; Provisional

Probab=96.93  E-value=0.0019  Score=59.13  Aligned_cols=75  Identities=17%  Similarity=0.095  Sum_probs=48.4

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhcccccccccc---ccCCCCCHHHHHhhC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD---EKGCHEDIFEFASKA  226 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~ell~~a  226 (269)
                      ...++|+|||.|.+|..++..+...| .+|..+|++.+......   .+..  +.  .....   ......+.+ .++.|
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~---lDl~--~~--~~~~~~~~~i~~~~d~~-~l~~A   74 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKA---LDLK--HF--STLVGSNINILGTNNYE-DIKDS   74 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHH---HHHh--hh--ccccCCCeEEEeCCCHH-HhCCC
Confidence            35679999999999999999988777 69999998764421100   0000  00  00000   000124666 77999


Q ss_pred             CEEEEec
Q 024297          227 DVVVCCL  233 (269)
Q Consensus       227 Dvvv~~l  233 (269)
                      |+|+++.
T Consensus        75 DiVVita   81 (319)
T PTZ00117         75 DVVVITA   81 (319)
T ss_pred             CEEEECC
Confidence            9999998

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=96.93  E-value=0.017  Score=53.33  Aligned_cols=142  Identities=15%  Similarity=0.062  Sum_probs=89.5

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecC--chHHHHHHH
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG--NIGVELAKR  171 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G--~iG~~~a~~  171 (269)
                      .+...+|+|.|.-+.   +..++  .+|+-++.+.+.+               .+..+.|.+|+++|-+  ++.+.++..
T Consensus       117 ~a~~~~vPVINa~~~---~~HPt--QaLaDl~Ti~e~~---------------g~~~l~gl~va~vGD~~~~v~~S~~~~  176 (334)
T PRK12562        117 LAEYAGVPVWNGLTN---EFHPT--QLLADLLTMQEHL---------------PGKAFNEMTLVYAGDARNNMGNSMLEA  176 (334)
T ss_pred             HHHhCCCCEEECCCC---CCChH--HHHHHHHHHHHHh---------------CCCCcCCcEEEEECCCCCCHHHHHHHH
Confidence            345568999998654   45666  5666666665432               1135889999999975  799999999


Q ss_pred             hccCCCEEEEEcCCCCCccccc-cccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec------CCC-------c
Q 024297          172 LRPFGVKIIATKRSWASHSQVS-CQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL------SLN-------K  237 (269)
Q Consensus       172 l~~~G~~V~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l------p~t-------~  237 (269)
                      +..+|++|.++.+..-...... .....++..+|.      ......+++++++++|||....      ...       .
T Consensus       177 ~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~------~~~~~~d~~~a~~~aDvvyt~~w~sm~~~~~~~~~~~~~  250 (334)
T PRK12562        177 AALTGLDLRLVAPQACWPEASLVAECSALAQKHGG------KITLTEDIAAGVKGADFIYTDVWVSMGEPKEKWAERIAL  250 (334)
T ss_pred             HHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCC------eEEEEcCHHHHhCCCCEEEEcCccccccchhhHHHHHHh
Confidence            9999999999986432211000 000000000110      0112478999999999999864      100       0


Q ss_pred             cccCcCCHHHHhhhC-CCCcEEEEcc
Q 024297          238 QTVKLCSSSLSSKSM-FFATYVVFMF  262 (269)
Q Consensus       238 ~t~~li~~~~l~~~m-k~ga~lIN~~  262 (269)
                      --..-++++.++ .. +++++|.-+.
T Consensus       251 ~~~y~v~~ell~-~a~~~~~i~mHcL  275 (334)
T PRK12562        251 LRGYQVNSKMMA-LTGNPQVKFLHCL  275 (334)
T ss_pred             ccCCcCCHHHHH-hhcCCCCEEECCC
Confidence            124567888898 74 7899887664

>PRK07589 ornithine cyclodeaminase; Validated

Probab=96.92  E-value=0.0025  Score=59.04  Aligned_cols=95  Identities=11%  Similarity=0.049  Sum_probs=62.3

Q ss_pred             CCEEEEEecCchHHHHHHHhc-cCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          153 GKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~-~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      -++++|||.|..++..++.+. -+.. +|.+|+|+..+...-...     .     ....-.....++.++++++||+|+
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~-----~-----~~~~~~v~~~~~~~~av~~ADIIv  198 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARN-----L-----AGPGLRIVACRSVAEAVEGADIIT  198 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHH-----H-----HhcCCcEEEeCCHHHHHhcCCEEE
Confidence            468999999999988887665 3555 699999987652111000     0     000000002368999999999999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      .+.|.+ +...++..+    .+|+|+.+.-+|
T Consensus       199 taT~S~-~~~Pvl~~~----~lkpG~hV~aIG  225 (346)
T PRK07589        199 TVTADK-TNATILTDD----MVEPGMHINAVG  225 (346)
T ss_pred             EecCCC-CCCceecHH----HcCCCcEEEecC
Confidence            997632 223667663    578999887766

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.91  E-value=0.0015  Score=60.88  Aligned_cols=68  Identities=26%  Similarity=0.325  Sum_probs=47.1

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      .++|||||.|..|+.+++.++.+|++|+++|+++.......   .     +   ......+.+.+.+.++++.+|+|+.
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~---a-----d---~~~~~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQV---A-----D---EVIVADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHh---C-----c---eEEecCCCCHHHHHHHHhcCCEEEe
Confidence            37899999999999999999999999999998654421100   0     0   0011112233468888899998754

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=96.90  E-value=0.00066  Score=61.67  Aligned_cols=110  Identities=15%  Similarity=0.096  Sum_probs=69.6

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccc---cccccchhhhcccccccc-----ccccCCCCCHHHHHh
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ---VSCQSSALAVKNGIIDDL-----VDEKGCHEDIFEFAS  224 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~ell~  224 (269)
                      -++|+|||.|.||+.+|..+..-|++|..+|++......   .........+..|.+.+.     ........++. .++
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~   81 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK   81 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence            379999999999999999999977999999998432110   000001111222221111     11111223444 789


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +||+|+=++|-+.+.++-+-++.=. ..+|+++|-..-++
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~-~~~~~aIlASNTSs  120 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEA-LAKPDAILASNTSS  120 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHh-hcCCCcEEeeccCC
Confidence            9999999999887776655554444 78899988654443

>PRK12861 malic enzyme; Reviewed

Probab=96.89  E-value=0.0093  Score=60.41  Aligned_cols=131  Identities=15%  Similarity=0.084  Sum_probs=92.8

Q ss_pred             CcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-
Q 024297           99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-  177 (269)
Q Consensus        99 gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-  177 (269)
                      .|++.|. +-     ..+|=-+++.+++.+|-                .++.+.+.+|.|.|.|.-|-.+++.+...|. 
T Consensus       157 ~ipvf~D-D~-----qGTa~v~lA~llnal~~----------------~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~  214 (764)
T PRK12861        157 KIPVFHD-DQ-----HGTAITVSAAFINGLKV----------------VGKSIKEVKVVTSGAGAAALACLDLLVDLGLP  214 (764)
T ss_pred             CCCeecc-cc-----chHHHHHHHHHHHHHHH----------------hCCChhHcEEEEECHhHHHHHHHHHHHHcCCC
Confidence            7888886 22     34666888899998885                3688999999999999999999999999998 


Q ss_pred             --EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCC
Q 024297          178 --KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFA  255 (269)
Q Consensus       178 --~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~g  255 (269)
                        +|+.+|+..--.......-.++     . ...... ....+|.|+++.+|+++-. .    +-+.++++.++ .|.+.
T Consensus       215 ~~~i~~~D~~Gli~~~r~~~l~~~-----k-~~~a~~-~~~~~L~eai~~advliG~-S----~~g~ft~e~v~-~Ma~~  281 (764)
T PRK12861        215 VENIWVTDIEGVVYRGRTTLMDPD-----K-ERFAQE-TDARTLAEVIGGADVFLGL-S----AGGVLKAEMLK-AMAAR  281 (764)
T ss_pred             hhhEEEEcCCCeeeCCCcccCCHH-----H-HHHHhh-cCCCCHHHHHhcCCEEEEc-C----CCCCCCHHHHH-HhccC
Confidence              7999996552111000000000     0 011111 1346899999999988765 2    24899999999 99998


Q ss_pred             cEEEEccCC
Q 024297          256 TYVVFMFQG  264 (269)
Q Consensus       256 a~lIN~~RG  264 (269)
                      .++.=.|..
T Consensus       282 PIIFaLsNP  290 (764)
T PRK12861        282 PLILALANP  290 (764)
T ss_pred             CEEEECCCC
Confidence            888766543

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.89  E-value=0.0015  Score=53.65  Aligned_cols=40  Identities=25%  Similarity=0.228  Sum_probs=35.9

Q ss_pred             ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       147 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      ..-++.|++|.|+|.|.+|...++.|...|++|+++++..
T Consensus         7 ~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~   46 (157)
T PRK06719          7 LMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI   46 (157)
T ss_pred             eEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc
Confidence            3468999999999999999999999999999999997543

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=96.87  E-value=0.015  Score=53.70  Aligned_cols=138  Identities=12%  Similarity=0.077  Sum_probs=86.0

Q ss_pred             HhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec---CchHHHHHHH
Q 024297           95 ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF---GNIGVELAKR  171 (269)
Q Consensus        95 ~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~---G~iG~~~a~~  171 (269)
                      +....|+|.|..+..  +..++  .+|+-++.+..++..             .|..+.|+||+++|=   +++.+.++..
T Consensus       118 a~~~~vPVINa~~g~--~~HPt--QaLaDl~Ti~e~~~~-------------~g~~l~g~kia~vGD~~~~rv~~Sl~~~  180 (338)
T PRK08192        118 AEGSRVPVINGGDGS--NEHPT--QALLDLFTIQKELAH-------------AGRGIDGMHIAMVGDLKFGRTVHSLSRL  180 (338)
T ss_pred             HHhCCCCEEECCCCC--CCCcH--HHHHHHHHHHHHhhc-------------cCCCcCCCEEEEECcCCCCchHHHHHHH
Confidence            345679999986521  33555  556666666543211             134689999999997   6889998987


Q ss_pred             hcc-CCCEEEEEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHHhhCCEEEEecCCCc-----c---
Q 024297          172 LRP-FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKADVVVCCLSLNK-----Q---  238 (269)
Q Consensus       172 l~~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aDvvv~~lp~t~-----~---  238 (269)
                      +.. +|++|.++.+..-......             .+.....+    ...+++++++++|||....--.+     +   
T Consensus       181 l~~~~g~~v~~~~P~~~~~~~~~-------------~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~~~~~  247 (338)
T PRK08192        181 LCMYKNVSFTLVSPKELAMPDYV-------------ISDIENAGHKITITDQLEGNLDKADILYLTRIQEERFPSQEEAN  247 (338)
T ss_pred             HHHhcCCEEEEECCccccCCHHH-------------HHHHHHcCCeEEEEcCHHHHHccCCEEEEcCcccccccchHHHH
Confidence            664 5999999987532111000             00011111    24789999999999998521100     0   


Q ss_pred             ---ccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          239 ---TVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       239 ---t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                         -...++.+.++..+|++++|.-+.
T Consensus       248 ~~~~~y~v~~e~l~~~a~~~ai~mHcL  274 (338)
T PRK08192        248 KYRGKFRLNQSIYTQHCKSNTVIMHPL  274 (338)
T ss_pred             HhhhccccCHHHHHhhhCCCCEEECCC
Confidence               125678888841589999887664

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.87  E-value=0.0011  Score=54.90  Aligned_cols=72  Identities=19%  Similarity=0.202  Sum_probs=51.7

Q ss_pred             EEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecC
Q 024297          156 VFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS  234 (269)
Q Consensus       156 vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp  234 (269)
                      |.|+|. |.+|+.+++.|...|.+|+++.|++.+...           +..+.-...+....+++.+.++.+|+|+.+++
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~   69 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAG   69 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCH
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----------ccccccceeeehhhhhhhhhhhhcchhhhhhh
Confidence            679995 999999999999999999999998765211           00011111222244567888999999999998


Q ss_pred             CCcc
Q 024297          235 LNKQ  238 (269)
Q Consensus       235 ~t~~  238 (269)
                      .+..
T Consensus        70 ~~~~   73 (183)
T PF13460_consen   70 PPPK   73 (183)
T ss_dssp             STTT
T ss_pred             hhcc
Confidence            6544

...

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.87  E-value=0.0017  Score=57.19  Aligned_cols=35  Identities=43%  Similarity=0.722  Sum_probs=32.5

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEc
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK  183 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~  183 (269)
                      .++.|+++.|-|||++|+.+|+.|...|++|+++.
T Consensus        28 ~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vs   62 (244)
T PF00208_consen   28 DSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVS   62 (244)
T ss_dssp             HSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEE
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEe
Confidence            46999999999999999999999999999988873

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=96.85  E-value=0.013  Score=59.36  Aligned_cols=132  Identities=14%  Similarity=0.091  Sum_probs=93.0

Q ss_pred             CCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCC
Q 024297           98 CGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV  177 (269)
Q Consensus        98 ~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~  177 (269)
                      ..|++.|. +-     ..+|--+++.+++.+|-.                ++.+.+.+|.|.|.|.-|-.++++|...|.
T Consensus       152 ~~ip~f~D-D~-----~GTa~v~lA~l~na~~~~----------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~  209 (752)
T PRK07232        152 MDIPVFHD-DQ-----HGTAIISAAALLNALELV----------------GKKIEDVKIVVSGAGAAAIACLNLLVALGA  209 (752)
T ss_pred             cCCCeecc-cc-----chHHHHHHHHHHHHHHHh----------------CCChhhcEEEEECccHHHHHHHHHHHHcCC
Confidence            36888876 22     346668888899888853                688999999999999999999999999998


Q ss_pred             ---EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCC
Q 024297          178 ---KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFF  254 (269)
Q Consensus       178 ---~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~  254 (269)
                         +|+.+|+..--.......     ..... ...... ....+|.++++.+|+++-.-     +.+.++++.++ .|.+
T Consensus       210 ~~~~i~~~D~~G~i~~~r~~~-----~~~~k-~~~a~~-~~~~~l~~~i~~~~v~iG~s-----~~g~~~~~~v~-~M~~  276 (752)
T PRK07232        210 KKENIIVCDSKGVIYKGRTEG-----MDEWK-AAYAVD-TDARTLAEAIEGADVFLGLS-----AAGVLTPEMVK-SMAD  276 (752)
T ss_pred             CcccEEEEcCCCeecCCCccc-----ccHHH-HHHhcc-CCCCCHHHHHcCCCEEEEcC-----CCCCCCHHHHH-Hhcc
Confidence               799999764321100000     00000 011111 23468999999999887652     24899999999 9999


Q ss_pred             CcEEEEccCC
Q 024297          255 ATYVVFMFQG  264 (269)
Q Consensus       255 ga~lIN~~RG  264 (269)
                      ..++.=.+..
T Consensus       277 ~piifalsNP  286 (752)
T PRK07232        277 NPIIFALANP  286 (752)
T ss_pred             CCEEEecCCC
Confidence            9888766643

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.83  E-value=0.0021  Score=61.61  Aligned_cols=38  Identities=26%  Similarity=0.357  Sum_probs=34.5

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      .+.+++|+|+|+|..|+++|+.|+..|++|.++|++..
T Consensus        11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~   48 (458)
T PRK01710         11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE   48 (458)
T ss_pred             hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            46688999999999999999999999999999997653

>PRK12862 malic enzyme; Reviewed

Probab=96.83  E-value=0.012  Score=59.74  Aligned_cols=131  Identities=14%  Similarity=0.068  Sum_probs=92.9

Q ss_pred             CcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-
Q 024297           99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-  177 (269)
Q Consensus        99 gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-  177 (269)
                      +|++.|. +-     ..+|=-+++.+++.+|-.                ++.+.+.+|.|.|.|.-|-.+|+++...|. 
T Consensus       161 ~ip~f~D-D~-----~GTa~v~la~l~~a~~~~----------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~  218 (763)
T PRK12862        161 KIPVFHD-DQ-----HGTAIIVAAALLNGLKLV----------------GKDIEDVKLVASGAGAAALACLDLLVSLGVK  218 (763)
T ss_pred             CCceEec-Cc-----ccHHHHHHHHHHHHHHHh----------------CCChhhcEEEEEChhHHHHHHHHHHHHcCCC
Confidence            5888886 22     346668888889888853                688999999999999999999999999998 


Q ss_pred             --EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCC
Q 024297          178 --KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFA  255 (269)
Q Consensus       178 --~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~g  255 (269)
                        +|+.+|+..--.....+.     ..... ....... ...+|.|+++.+|+++-.-     +-+.++++.++ .|.+.
T Consensus       219 ~~~i~~~D~~G~i~~~r~~~-----l~~~~-~~~a~~~-~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~-~M~~~  285 (763)
T PRK12862        219 RENIWVTDIKGVVYEGRTEL-----MDPWK-ARYAQKT-DARTLAEVIEGADVFLGLS-----AAGVLKPEMVK-KMAPR  285 (763)
T ss_pred             cccEEEEcCCCeeeCCCCcc-----ccHHH-HHHhhhc-ccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHH-HhccC
Confidence              799999754211100000     00000 0111111 3368999999999888753     24899999999 99999


Q ss_pred             cEEEEccCC
Q 024297          256 TYVVFMFQG  264 (269)
Q Consensus       256 a~lIN~~RG  264 (269)
                      .++.=.+..
T Consensus       286 piifalsNP  294 (763)
T PRK12862        286 PLIFALANP  294 (763)
T ss_pred             CEEEeCCCC
Confidence            988766643

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=96.82  E-value=0.0063  Score=50.05  Aligned_cols=104  Identities=19%  Similarity=0.149  Sum_probs=67.2

Q ss_pred             cCCEEEEEe--cCchHHHHHHHhccCCCEEEEEcCCCCCccc---cccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          152 LGKTVFILG--FGNIGVELAKRLRPFGVKIIATKRSWASHSQ---VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       152 ~g~~vgIiG--~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      .|+||+++|  .+++.+.++..+..||++|.++.+..-....   ...........+|      ....-..++++.++++
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g------~~i~~~~~~~e~l~~a   74 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG------GKITITDDIEEALKGA   74 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT------TEEEEESSHHHHHTT-
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC------CCeEEEeCHHHhcCCC
Confidence            478999999  4899999999999999999999875421100   0000000000011      0011237899999999


Q ss_pred             CEEEEecCCC---cc--------ccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLN---KQ--------TVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t---~~--------t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |||....--.   .+        ....++++.++ .+|++++|.-+.
T Consensus        75 Dvvy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~-~a~~~~i~mH~L  120 (158)
T PF00185_consen   75 DVVYTDRWQSMGDKERFKRLEKFKPYQVTEELME-RAKPDAIFMHPL  120 (158)
T ss_dssp             SEEEEESSSCTTSGGHHHHHHHHGGGSBSHHHHH-TSSTT-EEEESS
T ss_pred             CEEEEcCcccccchHHHHHHHHhcCCccCHHHHH-hcCCCcEEEeCC
Confidence            9998875431   11        12678999999 899999998775

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=96.82  E-value=0.015  Score=54.09  Aligned_cols=139  Identities=13%  Similarity=0.019  Sum_probs=85.1

Q ss_pred             CCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecC--------chHHHHH
Q 024297           98 CGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG--------NIGVELA  169 (269)
Q Consensus        98 ~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G--------~iG~~~a  169 (269)
                      ..|+|.|..+.   ...++  .+|+-++.+..++         |   .  -..+.|+||+|+|.|        ++.+.++
T Consensus       134 s~vPVINa~~~---~~HPt--QaLaDl~Ti~e~~---------G---~--~~~l~g~kvai~~~~d~~~gr~~~v~~Sl~  194 (357)
T TIGR03316       134 QRPPLVNLQCD---IDHPT--QAMADIMTLQEKF---------G---G--IENLKGKKFAMTWAYSPSYGKPLSVPQGII  194 (357)
T ss_pred             CCCCEEECCCC---CCCch--HHHHHHHHHHHHh---------C---C--ccccCCCEEEEEeccccccCccchHHHHHH
Confidence            46999999764   44566  5666666665432         1   0  124789999999853        4557888


Q ss_pred             HHhccCCCEEEEEcCCCCCcccccccc-chhhhccccccccccccCCCCCHHHHHhhCCEEEEec----C----------
Q 024297          170 KRLRPFGVKIIATKRSWASHSQVSCQS-SALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL----S----------  234 (269)
Q Consensus       170 ~~l~~~G~~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l----p----------  234 (269)
                      ..+..||++|.++.+..-......... ..++-.+|.      ......+++++++++|||....    .          
T Consensus       195 ~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~------~~~~~~d~~ea~~~aDvvyt~~w~s~~~~~~~~~~~~  268 (357)
T TIGR03316       195 GLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGG------KFNIVNSMDEAFKDADIVYPKSWAPIAAMEKRTELYT  268 (357)
T ss_pred             HHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCC------eEEEEcCHHHHhCCCCEEEECCeeccccccccchhcc
Confidence            889999999999987532111100000 000000110      0112478999999999999873    1          


Q ss_pred             CC-----------------ccccCcCCHHHHhhhCC-CCcEEEEcc
Q 024297          235 LN-----------------KQTVKLCSSSLSSKSMF-FATYVVFMF  262 (269)
Q Consensus       235 ~t-----------------~~t~~li~~~~l~~~mk-~ga~lIN~~  262 (269)
                      ..                 .-....++++.++ .++ ++++|.-+.
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~y~vt~e~l~-~a~~~~~i~MHcL  313 (357)
T TIGR03316       269 GSDTEGAELLEQELLSQNKKHKDWVCTEERMA-LTHDGEALYMHCL  313 (357)
T ss_pred             cchhhhhhhhhccchhHHHHhcCCeECHHHHH-hcCCCCcEEECCC
Confidence            00                 0023457999999 888 888887664

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=96.82  E-value=0.0011  Score=51.09  Aligned_cols=64  Identities=19%  Similarity=0.258  Sum_probs=45.1

Q ss_pred             EEEEEecCchHHHHHHHhccC--CCEEE-EEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHh--hCC
Q 024297          155 TVFILGFGNIGVELAKRLRPF--GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--KAD  227 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~--G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--~aD  227 (269)
                      +|||||+|.+|+.....+...  +.+|. ++|+++.+..                 ......+  .+.+++++++  +.|
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~-----------------~~~~~~~~~~~~~~~~ll~~~~~D   64 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAE-----------------AFAEKYGIPVYTDLEELLADEDVD   64 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHH-----------------HHHHHTTSEEESSHHHHHHHTTES
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHH-----------------HHHHHhcccchhHHHHHHHhhcCC
Confidence            799999999999999877755  66765 5666543311                 0111111  4578999998  789


Q ss_pred             EEEEecCC
Q 024297          228 VVVCCLSL  235 (269)
Q Consensus       228 vvv~~lp~  235 (269)
                      +|+++.|.
T Consensus        65 ~V~I~tp~   72 (120)
T PF01408_consen   65 AVIIATPP   72 (120)
T ss_dssp             EEEEESSG
T ss_pred             EEEEecCC
Confidence            99999884

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.82  E-value=0.015  Score=52.18  Aligned_cols=121  Identities=16%  Similarity=0.195  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccC----CC-------EEEEEcC
Q 024297          116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF----GV-------KIIATKR  184 (269)
Q Consensus       116 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~----G~-------~V~~~~~  184 (269)
                      +|--+++.+|+.+|-                .++.|.+.+|.|+|.|.-|-.+|+++...    |.       +++.+|+
T Consensus         4 Ta~V~lAgllnAlk~----------------~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~   67 (279)
T cd05312           4 TAAVALAGLLAALRI----------------TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDS   67 (279)
T ss_pred             HHHHHHHHHHHHHHH----------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcC
Confidence            455788888888885                36789999999999999999999999876    87       7999998


Q ss_pred             CCCCccccccccchhhhccccccccccccC--CCCCHHHHHh--hCCEEEEecCCCccccCcCCHHHHhhhCC---CCcE
Q 024297          185 SWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--KADVVVCCLSLNKQTVKLCSSSLSSKSMF---FATY  257 (269)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--~aDvvv~~lp~t~~t~~li~~~~l~~~mk---~ga~  257 (269)
                      ..--.....+. .++-      ........  ...+|.|+++  ++|+++-+-    ..-++|+++.++ .|.   +..+
T Consensus        68 ~Gll~~~r~~l-~~~~------~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~-~Ma~~~~~PI  135 (279)
T cd05312          68 KGLLTKDRKDL-TPFK------KPFARKDEEKEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVR-AMAKSNERPI  135 (279)
T ss_pred             CCeEeCCCCcc-hHHH------HHHHhhcCcccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHH-HHHhcCCCCE
Confidence            64321110000 0000      01111111  3368999999  889988763    123899999999 998   7788


Q ss_pred             EEEccCC
Q 024297          258 VVFMFQG  264 (269)
Q Consensus       258 lIN~~RG  264 (269)
                      +.=.|..
T Consensus       136 IFaLSNP  142 (279)
T cd05312         136 IFALSNP  142 (279)
T ss_pred             EEECCCc
Confidence            7766654

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.77  E-value=0.0031  Score=49.26  Aligned_cols=93  Identities=26%  Similarity=0.229  Sum_probs=52.5

Q ss_pred             EEEEEe-cCchHHHHHHHhcc-CCCEEEE-EcCCCCCccccccccchhhhc--cccccccccccCCCCCHHHHHhhCCEE
Q 024297          155 TVFILG-FGNIGVELAKRLRP-FGVKIIA-TKRSWASHSQVSCQSSALAVK--NGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       155 ~vgIiG-~G~iG~~~a~~l~~-~G~~V~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      +|+|+| .|.+|+.++++|.. ..+++.. +.++...... .    ...++  .+...-..    ...+. +.+.++|+|
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~-~----~~~~~~~~~~~~~~~----~~~~~-~~~~~~Dvv   70 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKP-L----SEVFPHPKGFEDLSV----EDADP-EELSDVDVV   70 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSB-H----HHTTGGGTTTEEEBE----EETSG-HHHTTESEE
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCe-e----ehhccccccccceeE----eecch-hHhhcCCEE
Confidence            699999 99999999999996 4667554 4443312111 1    11111  11000001    11233 445999999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ++|+|...      .++...+.+++|..+|+.+-
T Consensus        71 f~a~~~~~------~~~~~~~~~~~g~~ViD~s~   98 (121)
T PF01118_consen   71 FLALPHGA------SKELAPKLLKAGIKVIDLSG   98 (121)
T ss_dssp             EE-SCHHH------HHHHHHHHHHTTSEEEESSS
T ss_pred             EecCchhH------HHHHHHHHhhCCcEEEeCCH
Confidence            99988331      23343424578899998873

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK14030 glutamate dehydrogenase; Provisional

Probab=96.76  E-value=0.0064  Score=57.97  Aligned_cols=35  Identities=37%  Similarity=0.613  Sum_probs=32.7

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEE
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT  182 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~  182 (269)
                      +.++.|+||.|=|+|++|+.+|+.|..+|++|+++
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVav  257 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTI  257 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            45799999999999999999999999999999993

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=96.76  E-value=0.0095  Score=56.82  Aligned_cols=36  Identities=31%  Similarity=0.542  Sum_probs=33.1

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEc
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK  183 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~  183 (269)
                      +.++.|+||.|=|+|++|+.+|+.|..+|++|++++
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavS  267 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMS  267 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            467999999999999999999999999999999554

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=96.75  E-value=0.0073  Score=54.52  Aligned_cols=151  Identities=13%  Similarity=0.080  Sum_probs=91.7

Q ss_pred             CCceEEEEccccCCccchhhHhcCCc-EEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccC
Q 024297           75 NQMKLIMQFGVGLEGVDINAATRCGI-KVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG  153 (269)
Q Consensus        75 ~~Lk~I~~~~aG~d~id~~~~~~~gI-~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g  153 (269)
                      .+.=+|=....|+-++   ++...++ +|.|..+.+  +..++  .++.-++...+.+                 ..+.|
T Consensus       103 ~D~iViRH~~egaa~~---~a~~~~~~pvINaGDG~--~qHPT--Q~LLDl~TI~~~~-----------------G~~~g  158 (316)
T COG0540         103 VDAIVIRHPEEGAARL---LAEFSGVNPVINAGDGS--HQHPT--QALLDLYTIREEF-----------------GRLDG  158 (316)
T ss_pred             CCEEEEeCccccHHHH---HHHhcCCCceEECCCCC--CCCcc--HHHHHHHHHHHHh-----------------CCcCC
Confidence            4444444444444433   3344466 799998754  44555  5666666666654                 33999


Q ss_pred             CEEEEEe---cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccc--cC-CCCCHHHHHhhCC
Q 024297          154 KTVFILG---FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE--KG-CHEDIFEFASKAD  227 (269)
Q Consensus       154 ~~vgIiG---~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~l~ell~~aD  227 (269)
                      .+|+|+|   +|++.+..++.|..||++|..+.+..-..            |.++.++....  .. ..+..++.++++|
T Consensus       159 l~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~------------p~~i~~~l~~~~~~~~~~~~~e~~i~~~D  226 (316)
T COG0540         159 LKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLP------------PEYILEELEEKGGVVVEHDSDEEVIEEAD  226 (316)
T ss_pred             cEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCC------------chhHHHHHhhcCceEEEecchhhhhccCC
Confidence            9999999   99999999999999999999998643221            11111111111  11 2345666999999


Q ss_pred             EEEEec------CCCc--c---ccCcCCHHHHhhh-CCCCcEEEEcc
Q 024297          228 VVVCCL------SLNK--Q---TVKLCSSSLSSKS-MFFATYVVFMF  262 (269)
Q Consensus       228 vvv~~l------p~t~--~---t~~li~~~~l~~~-mk~ga~lIN~~  262 (269)
                      ||.+.=      +...  +   -.+-+....++ . +|+++++.--+
T Consensus       227 Vl~~lRvQ~ER~~~~~~~s~~~~y~~~~~~~~~-~~~k~~~ivmHP~  272 (316)
T COG0540         227 VLYMLRVQKERFNDPEEYSKVKEYYKLYGLTLE-RLAKPDAIVMHPL  272 (316)
T ss_pred             EEEeehhhHhhcCCccchHHHHHHHHHHHHHHH-hhcCCCcEEECCC
Confidence            997761      1111  1   11122233445 5 88888876543

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.74  E-value=0.0036  Score=56.37  Aligned_cols=104  Identities=17%  Similarity=0.110  Sum_probs=62.6

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      ++.++++.|+|.|..|++++..|...|+ +|++++|+..+.......   +....+.  ... ......++.+.+..+|+
T Consensus       124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~---~~~~~~~--~~~-~~~~~~~~~~~~~~~di  197 (283)
T PRK14027        124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV---INNAVGR--EAV-VGVDARGIEDVIAAADG  197 (283)
T ss_pred             CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH---HhhccCc--ceE-EecCHhHHHHHHhhcCE
Confidence            4568999999999999999999999998 799999986552211100   0000000  000 00011123456778999


Q ss_pred             EEEecCCCcccc--CcCCHHHHhhhCCCCcEEEEccC
Q 024297          229 VVCCLSLNKQTV--KLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       229 vv~~lp~t~~t~--~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ||++.|..-...  ..++.   . .++++.+++++--
T Consensus       198 vINaTp~Gm~~~~~~~~~~---~-~l~~~~~v~D~vY  230 (283)
T PRK14027        198 VVNATPMGMPAHPGTAFDV---S-CLTKDHWVGDVVY  230 (283)
T ss_pred             EEEcCCCCCCCCCCCCCCH---H-HcCCCcEEEEccc
Confidence            999998653211  12332   3 4667777777643

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=96.71  E-value=0.0011  Score=67.11  Aligned_cols=109  Identities=18%  Similarity=0.112  Sum_probs=70.4

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcccc---ccccchhhhcccccccc-----ccccCCCCCHHHHHhh
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV---SCQSSALAVKNGIIDDL-----VDEKGCHEDIFEFASK  225 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~ell~~  225 (269)
                      ++|+|||.|.||..+|..+...|++|+.+|++.+.-...   ........+..|.+...     ........++ +.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER  392 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            689999999999999999999999999999876531110   00001111122221110     0111112456 45799


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      ||+|+=++|-..+.+.-+-++.=+ .++++++|....-+
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~-~~~~~~ilasNTSs  430 (715)
T PRK11730        393 VDVVVEAVVENPKVKAAVLAEVEQ-KVREDTILASNTST  430 (715)
T ss_pred             CCEEEecccCcHHHHHHHHHHHHh-hCCCCcEEEEcCCC
Confidence            999999999887777665554545 78999988765433

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.68  E-value=0.0017  Score=60.72  Aligned_cols=114  Identities=17%  Similarity=0.197  Sum_probs=69.1

Q ss_pred             HHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhh------------
Q 024297          134 MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALA------------  200 (269)
Q Consensus       134 ~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~------------  200 (269)
                      |.+++.-..|.......|.+++|.|+|.|.+|..+++.|...|. +++.+|...-.. .....+.-|.            
T Consensus        22 y~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~-sNL~RQ~l~~~~diG~~Ka~~~  100 (370)
T PRK05600         22 TARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDV-SNIHRQILFGASDVGRPKVEVA  100 (370)
T ss_pred             hhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEcc-ccccccccCChhHCCCHHHHHH
Confidence            33333334566555678999999999999999999999999998 799998642211 0000000000            


Q ss_pred             ------hccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297          201 ------VKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS  249 (269)
Q Consensus       201 ------~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~  249 (269)
                            ..++.--..........++.++++++|+|+.|+- +.+++.++|+...+
T Consensus       101 ~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~  154 (370)
T PRK05600        101 AERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEI  154 (370)
T ss_pred             HHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence                  0000000000111122456789999999988876 56788888875444

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.63  E-value=0.008  Score=54.63  Aligned_cols=76  Identities=18%  Similarity=0.112  Sum_probs=46.8

Q ss_pred             CEEEEEecCchHHHHHHHhccCC--CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      ++|+|||.|.+|+.+|..|...|  .+|..+|++............+.....+     ........+.+ .+++||+|++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~-----~~~~i~~~~~~-~l~~aDIVIi   74 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLP-----SPVKIKAGDYS-DCKDADIVVI   74 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccC-----CCeEEEcCCHH-HhCCCCEEEE
Confidence            48999999999999999999888  4899999976652111100000000000     00000112343 4789999999


Q ss_pred             ecCC
Q 024297          232 CLSL  235 (269)
Q Consensus       232 ~lp~  235 (269)
                      +...
T Consensus        75 tag~   78 (306)
T cd05291          75 TAGA   78 (306)
T ss_pred             ccCC
Confidence            9764

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.61  E-value=0.011  Score=55.84  Aligned_cols=91  Identities=23%  Similarity=0.192  Sum_probs=64.6

Q ss_pred             ccccCCEEEEEec----------CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCC
Q 024297          149 ETLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED  218 (269)
Q Consensus       149 ~~l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (269)
                      .++.+++|+|+|+          .+-+..+++.|...|++|.+||+...+..                   ........+
T Consensus       309 ~~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~-------------------~~~~~~~~~  369 (411)
T TIGR03026       309 GPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEE-------------------VKGLPLIDD  369 (411)
T ss_pred             hcccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhh-------------------hhhcccCCC
Confidence            3689999999997          56889999999999999999998654310                   011112468


Q ss_pred             HHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          219 IFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       219 l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      +.+.++.+|+|+++.+.. +.+. ++-+.+...|+ ..++|+.
T Consensus       370 ~~~~~~~ad~~v~~t~~~-~~~~-~~~~~~~~~~~-~~~v~D~  409 (411)
T TIGR03026       370 LEEALKGADALVILTDHD-EFKD-LDLEKIKDLMK-GKVVVDT  409 (411)
T ss_pred             HHHHHhCCCEEEEecCCH-HHhc-cCHHHHHHhcC-CCEEEeC
Confidence            889999999999998744 2233 35555552455 4577764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=96.61  E-value=0.0012  Score=66.88  Aligned_cols=109  Identities=15%  Similarity=0.013  Sum_probs=70.0

Q ss_pred             CEEEEEecCchHHHHHHHhc-cCCCEEEEEcCCCCCcccc---ccccchhhhcccccccc-----ccccCCCCCHHHHHh
Q 024297          154 KTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQV---SCQSSALAVKNGIIDDL-----VDEKGCHEDIFEFAS  224 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~ell~  224 (269)
                      ++|+|||.|.||..+|..+. ..|++|+.+|++.+.-...   .....+.....|.+...     ........++ +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            78999999999999999988 7899999999875431110   00001111112211110     0011112455 4679


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      .||+|+=++|-+.+.+.-+-++.=+ .++|+++|....-+
T Consensus       389 ~aDlViEav~E~~~~K~~v~~~le~-~~~~~~ilasnTS~  427 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMVAEVEQ-NCAPHTIFASNTSS  427 (708)
T ss_pred             cCCEEeecccccHHHHHHHHHHHHh-hCCCCcEEEECCCC
Confidence            9999999999887776655554445 79999998876544

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.61  E-value=0.0012  Score=57.37  Aligned_cols=76  Identities=17%  Similarity=0.250  Sum_probs=50.4

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH-HhhCCEEEEe
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDvvv~~  232 (269)
                      +++.|+|+|.+|..+|+.|...|++|+.+++.............+.       ..........+-|.++ +.++|+++.+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~-------~~v~gd~t~~~~L~~agi~~aD~vva~   73 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDT-------HVVIGDATDEDVLEEAGIDDADAVVAA   73 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcce-------EEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence            5789999999999999999999999999998776532211100000       0011111123446666 7799999999


Q ss_pred             cCCC
Q 024297          233 LSLN  236 (269)
Q Consensus       233 lp~t  236 (269)
                      ...+
T Consensus        74 t~~d   77 (225)
T COG0569          74 TGND   77 (225)
T ss_pred             eCCC
Confidence            7644

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=96.60  E-value=0.0044  Score=60.61  Aligned_cols=97  Identities=16%  Similarity=0.221  Sum_probs=59.9

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH-hhCCE
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-SKADV  228 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDv  228 (269)
                      ++.+|++.|+|.|.+|++++..|...|++|++++|+.++......             ..........++.+.+ ..+|+
T Consensus       376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~-------------~l~~~~~~~~~~~~~~~~~~di  442 (529)
T PLN02520        376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELAD-------------AVGGQALTLADLENFHPEEGMI  442 (529)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-------------HhCCceeeHhHhhhhccccCeE
Confidence            477899999999999999999999999999999987543211000             0000000122233322 35799


Q ss_pred             EEEecCCCcc--ccC-cCCHHHHhhhCCCCcEEEEccC
Q 024297          229 VVCCLSLNKQ--TVK-LCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       229 vv~~lp~t~~--t~~-li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |+++.|..-.  +.. .++.   . .+++..+++++.-
T Consensus       443 iINtT~vGm~~~~~~~pl~~---~-~l~~~~~v~D~vY  476 (529)
T PLN02520        443 LANTTSVGMQPNVDETPISK---H-ALKHYSLVFDAVY  476 (529)
T ss_pred             EEecccCCCCCCCCCCcccH---h-hCCCCCEEEEecc
Confidence            9988875422  111 2332   3 5667777777643

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=96.60  E-value=0.0016  Score=65.98  Aligned_cols=108  Identities=15%  Similarity=0.066  Sum_probs=68.9

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccc---cccchhhhccccccc-----cccccCCCCCHHHHHhh
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS---CQSSALAVKNGIIDD-----LVDEKGCHEDIFEFASK  225 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~~  225 (269)
                      ++|+|||.|.||..+|..+...|++|+.+|++.+.-....   .......+..|.+..     .........++ +.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN  392 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            5799999999999999999999999999998765311100   000011111121110     00111112455 45799


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ||+|+=++|-..+.+.=+-++.=+ .++++++|-...-
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~-~~~~~~ilasnTS  429 (714)
T TIGR02437       393 VDIVVEAVVENPKVKAAVLAEVEQ-HVREDAILASNTS  429 (714)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHh-hCCCCcEEEECCC
Confidence            999999999887776655554545 7899998876543

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.59  E-value=0.0024  Score=59.41  Aligned_cols=107  Identities=16%  Similarity=0.153  Sum_probs=65.3

Q ss_pred             CCCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhh------------------h
Q 024297          141 KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALA------------------V  201 (269)
Q Consensus       141 ~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~------------------~  201 (269)
                      ..|.......|.+++|.|+|.|.+|..+++.|...|. +++.+|...-.. .......-|.                  .
T Consensus        16 ~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~-sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~   94 (355)
T PRK05597         16 GEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDL-SNLHRQVIHSTAGVGQPKAESAREAMLAL   94 (355)
T ss_pred             hhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcc-cccccCcccChhHCCChHHHHHHHHHHHH
Confidence            3466555577999999999999999999999999998 688888643211 0000000000                  0


Q ss_pred             ccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297          202 KNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS  249 (269)
Q Consensus       202 ~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~  249 (269)
                      .++.--.........++..++++++|+|+.+.- +.+++.+++..-.+
T Consensus        95 np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d-~~~~r~~~n~~c~~  141 (355)
T PRK05597         95 NPDVKVTVSVRRLTWSNALDELRDADVILDGSD-NFDTRHLASWAAAR  141 (355)
T ss_pred             CCCcEEEEEEeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence            000000000011122345688999999999875 56778887775444

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.58  E-value=0.0023  Score=55.13  Aligned_cols=97  Identities=16%  Similarity=0.176  Sum_probs=64.5

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      ..++.|++|.|+|-|.+|..=++.|...|++|+++.+...+......       .++.+. ...   ...+. +.+..++
T Consensus         7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~-------~~~~i~-~~~---~~~~~-~~~~~~~   74 (210)
T COG1648           7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALI-------EEGKIK-WIE---REFDA-EDLDDAF   74 (210)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHH-------HhcCcc-hhh---cccCh-hhhcCce
Confidence            46799999999999999999999999999999999987633211110       011100 111   11223 3344599


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +|+.+.+.     .-+|+..+. ..++-.+++|+.
T Consensus        75 lviaAt~d-----~~ln~~i~~-~a~~~~i~vNv~  103 (210)
T COG1648          75 LVIAATDD-----EELNERIAK-AARERRILVNVV  103 (210)
T ss_pred             EEEEeCCC-----HHHHHHHHH-HHHHhCCceecc
Confidence            99999653     334666666 777777888875

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.55  E-value=0.027  Score=49.80  Aligned_cols=121  Identities=12%  Similarity=0.093  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-----------EEEEEcC
Q 024297          116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-----------KIIATKR  184 (269)
Q Consensus       116 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-----------~V~~~~~  184 (269)
                      +|--+++.+++.+|-                .++.+.+.+|.|+|.|..|-.+|+++...+.           +|+.+|+
T Consensus         4 TaaV~lAgllnAlk~----------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~   67 (254)
T cd00762           4 TASVAVAGLLAALKV----------------TKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDR   67 (254)
T ss_pred             hHHHHHHHHHHHHHH----------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECC
Confidence            455778888888885                3578999999999999999999999987765           6999997


Q ss_pred             CCCCccccccccchhhhccccccc---cccccCCCCCHHHHHh--hCCEEEEecCCCccccCcCCHHHHhhhCC---CCc
Q 024297          185 SWASHSQVSCQSSALAVKNGIIDD---LVDEKGCHEDIFEFAS--KADVVVCCLSLNKQTVKLCSSSLSSKSMF---FAT  256 (269)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~ell~--~aDvvv~~lp~t~~t~~li~~~~l~~~mk---~ga  256 (269)
                      ..--.....+. .++-      ..   .........+|.++++  +.|+++-..    ..-++|+++.++ .|.   +..
T Consensus        68 ~Gll~~~r~~l-~~~~------~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~-~Ma~~~~~P  135 (254)
T cd00762          68 KGLLVKNRKET-CPNE------YHLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIR-AXAEINERP  135 (254)
T ss_pred             CCeEeCCCCcc-CHHH------HHHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHH-HHhhcCCCC
Confidence            64321100000 0000      00   1111113468999999  999988763    224899999999 998   777


Q ss_pred             EEEEccCC
Q 024297          257 YVVFMFQG  264 (269)
Q Consensus       257 ~lIN~~RG  264 (269)
                      ++.=.|..
T Consensus       136 IIFaLSNP  143 (254)
T cd00762         136 VIFALSNP  143 (254)
T ss_pred             EEEECCCc
Confidence            77766544

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=96.54  E-value=0.015  Score=53.09  Aligned_cols=110  Identities=16%  Similarity=0.160  Sum_probs=70.4

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccc-cccCCEEEEEec-CchHHHHHHH
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGE-TLLGKTVFILGF-GNIGVELAKR  171 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~-~l~g~~vgIiG~-G~iG~~~a~~  171 (269)
                      .+....|+|.|..+.   ...++  .+|+-++.+.+.+                |. .+.|++|+++|- +++.+.++..
T Consensus       114 ~a~~~~vPVINag~~---~~HPt--QaL~Dl~Ti~e~~----------------g~~~l~g~~va~vGd~~rv~~Sl~~~  172 (311)
T PRK14804        114 MKNGSQVPVINGCDN---MFHPC--QSLADIMTIALDS----------------PEIPLNQKQLTYIGVHNNVVNSLIGI  172 (311)
T ss_pred             HHHHCCCCEEECCCC---CCChH--HHHHHHHHHHHHh----------------CCCCCCCCEEEEECCCCcHHHHHHHH
Confidence            345567999998764   34555  5555555554431                22 488999999996 7999999999


Q ss_pred             hccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       172 l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      +..+|++|.++.+..-.. ..........-..|       ......+++++++++|||..-
T Consensus       173 ~~~~G~~v~~~~P~~~~~-~~~~~~~~~~~~~g-------~i~~~~d~~~av~~aDvvy~d  225 (311)
T PRK14804        173 TAALGIHLTLVTPIAAKE-NIHAQTVERAKKKG-------TLSWEMNLHKAVSHADYVYTD  225 (311)
T ss_pred             HHHcCCEEEEECCCCccH-HHHHHHHHHHHhcC-------CeEEEeCHHHHhCCCCEEEee
Confidence            999999999998754210 00000000000001       000136899999999999984

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=96.54  E-value=0.01  Score=52.70  Aligned_cols=105  Identities=20%  Similarity=0.058  Sum_probs=68.8

Q ss_pred             ccccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHH
Q 024297          147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA  223 (269)
Q Consensus       147 ~~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell  223 (269)
                      .|.+++..+|+|+| .|.||..+|+.|.+.+++....-|........     ..       ..+....+  ...+++..+
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq-----~l-------~~l~e~~~~~~i~s~d~~~  228 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQ-----RL-------TLLQEELGRGKIMSLDYAL  228 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhh-----hh-------hhcccccCCCeeeeccccc
Confidence            57999999999999 59999999999999998877766432221100     00       01112222  234666666


Q ss_pred             hhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          224 SKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       224 ~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      .+.|+++-... + .+-..|+.   + .+|||+++|+-||..=||+
T Consensus       229 ~~e~i~v~vAs-~-~~g~~I~p---q-~lkpg~~ivD~g~P~dvd~  268 (351)
T COG5322         229 PQEDILVWVAS-M-PKGVEIFP---Q-HLKPGCLIVDGGYPKDVDT  268 (351)
T ss_pred             cccceEEEEee-c-CCCceech---h-hccCCeEEEcCCcCccccc
Confidence            66666655443 2 23355555   2 7899999999999877664

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=96.52  E-value=0.0013  Score=66.70  Aligned_cols=107  Identities=16%  Similarity=0.075  Sum_probs=69.2

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccc---cccchhhhccccccc-----cccccCCCCCHHHHHhh
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS---CQSSALAVKNGIIDD-----LVDEKGCHEDIFEFASK  225 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~~  225 (269)
                      ++|+|||.|.||..+|..+...|++|+.+|++.+.-....   ....+..+..|.+..     .........+++ .+++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  414 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN  414 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            6899999999999999999999999999998765311100   000011111221110     001111224564 5799


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ||+|+=++|-+.+.+.-+-++.=+ .++++++|....
T Consensus       415 aDlViEAv~E~l~~K~~vf~~l~~-~~~~~~ilasNT  450 (737)
T TIGR02441       415 ADMVIEAVFEDLSLKHKVIKEVEA-VVPPHCIIASNT  450 (737)
T ss_pred             CCeehhhccccHHHHHHHHHHHHh-hCCCCcEEEEcC
Confidence            999999999887777666564545 899999887543

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=96.50  E-value=0.011  Score=53.86  Aligned_cols=75  Identities=15%  Similarity=0.139  Sum_probs=46.9

Q ss_pred             CEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhcccccccccc-ccCCCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDvvv~  231 (269)
                      ++|+|||.|.+|..+|..+...|. +|+.+|..........   .++.  +........ ......++++ +++||+|++
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a---~d~~--~~~~~~~~~~~i~~t~d~~~-~~~aDiVIi   75 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKA---LDMY--EASPVGGFDTKVTGTNNYAD-TANSDIVVI   75 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHH---Hhhh--hhhhccCCCcEEEecCCHHH-hCCCCEEEE
Confidence            589999999999999999888765 8999998544211000   0010  000000000 1111256766 789999999


Q ss_pred             ecC
Q 024297          232 CLS  234 (269)
Q Consensus       232 ~lp  234 (269)
                      +.+
T Consensus        76 tag   78 (305)
T TIGR01763        76 TAG   78 (305)
T ss_pred             cCC
Confidence            988

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=96.49  E-value=0.003  Score=57.19  Aligned_cols=104  Identities=19%  Similarity=0.233  Sum_probs=62.9

Q ss_pred             EEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhcc---c------------------cccccccc
Q 024297          155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKN---G------------------IIDDLVDE  212 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~---~------------------~~~~~~~~  212 (269)
                      +|.|+|.|.+|..+|+.|...|. +++.+|...-...- ...+.-|...+   |                  .+......
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sN-L~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~   79 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSN-PVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLS   79 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccc-CCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeee
Confidence            58999999999999999999998 68888853222100 00000001101   0                  00000000


Q ss_pred             ----------------cCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          213 ----------------KGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       213 ----------------~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                                      ....+.++++++++|+|+.++. +-++|.+++..-..    .+..+||.+-|
T Consensus        80 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tD-n~esR~L~~~~~~~----~~k~~I~aalG  142 (307)
T cd01486          80 IPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTD-SRESRWLPTLLSAA----KNKLVINAALG  142 (307)
T ss_pred             ccccccccccccccccccCHHHHHHHHhhCCEEEECCC-CHHHHHHHHHHHHH----hCCcEEEEEec
Confidence                            0012347899999999999995 77889888875444    24477776654

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.49  E-value=0.0095  Score=56.42  Aligned_cols=35  Identities=31%  Similarity=0.475  Sum_probs=32.0

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      .++|.|||+|.+|.++|+.|+..|++|+++|++..
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~   37 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE   37 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            46899999999999999999999999999997653

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.49  E-value=0.008  Score=53.32  Aligned_cols=63  Identities=19%  Similarity=0.274  Sum_probs=44.3

Q ss_pred             CEEEEEec-CchHHHHHHHhccC-CCEEEE-EcCCCCCccccccccchhhhcccccccccccc--CCCCCHHHHHhhCCE
Q 024297          154 KTVFILGF-GNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--GCHEDIFEFASKADV  228 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~~-G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~ell~~aDv  228 (269)
                      .+|+|+|+ |.||+.+++.+... ++++.+ ++++......                 . ...  ....+++++++.+|+
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~-----------------~-~~~~i~~~~dl~~ll~~~Dv   63 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG-----------------Q-GALGVAITDDLEAVLADADV   63 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc-----------------c-CCCCccccCCHHHhccCCCE
Confidence            47999998 99999999998864 788666 6655432100                 0 111  134688998989999


Q ss_pred             EEEecC
Q 024297          229 VVCCLS  234 (269)
Q Consensus       229 vv~~lp  234 (269)
                      |+.+.|
T Consensus        64 Vid~t~   69 (257)
T PRK00048         64 LIDFTT   69 (257)
T ss_pred             EEECCC
Confidence            997775

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.47  E-value=0.0046  Score=54.34  Aligned_cols=100  Identities=18%  Similarity=0.227  Sum_probs=61.9

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhh------------------hccccccc
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALA------------------VKNGIIDD  208 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~  208 (269)
                      ...|.+++|.|+|.|.+|..+|+.|...|. +++.+|...-.. .....+.-+.                  ...+..-.
T Consensus        19 q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~-sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~   97 (240)
T TIGR02355        19 QEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSL-SNLQRQVLHSDANIGQPKVESAKDALTQINPHIAIN   97 (240)
T ss_pred             HHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccc-cCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEE
Confidence            356999999999999999999999999998 688888643321 1111000000                  00000000


Q ss_pred             cccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297          209 LVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS  249 (269)
Q Consensus       209 ~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~  249 (269)
                      ......+.+++.++++++|+|+.+.- +.+++..+++...+
T Consensus        98 ~~~~~i~~~~~~~~~~~~DlVvd~~D-~~~~r~~ln~~~~~  137 (240)
T TIGR02355        98 PINAKLDDAELAALIAEHDIVVDCTD-NVEVRNQLNRQCFA  137 (240)
T ss_pred             EEeccCCHHHHHHHhhcCCEEEEcCC-CHHHHHHHHHHHHH
Confidence            00111122347788999999998885 66788888775544

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=96.46  E-value=0.029  Score=54.58  Aligned_cols=130  Identities=13%  Similarity=0.050  Sum_probs=80.2

Q ss_pred             EEecC-CCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec---CchHHHHHHHhccCC-
Q 024297          102 VARIP-GDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF---GNIGVELAKRLRPFG-  176 (269)
Q Consensus       102 v~n~~-~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~---G~iG~~~a~~l~~~G-  176 (269)
                      |.|.. |.   +..++  .+|+-++.+..++                |..+.|.+|+++|-   |++.+.++..+..|| 
T Consensus       143 VINAgdg~---~~HPT--QaLaDl~TI~E~~----------------G~~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~  201 (525)
T PRK13376        143 FINAGDGK---HEHPT--QELLDEFTFLEQN----------------NFDNSFIHIALVGDLLHGRTVHSKVNGLKIFKN  201 (525)
T ss_pred             EEECCCCC---CCCch--HHHHHHHHHHHHc----------------CCCcCCCEEEEECCCCCCcHHHHHHHHHHhcCC
Confidence            68876 33   34555  5566666655431                33588999999997   699999999999998 


Q ss_pred             CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE--EE-------ecCCC-----cc--cc
Q 024297          177 VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV--VC-------CLSLN-----KQ--TV  240 (269)
Q Consensus       177 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv--v~-------~lp~t-----~~--t~  240 (269)
                      ++|.++.+..-......   ....-.+|.      ......+++++++++|+.  ..       -....     .+  -.
T Consensus       202 ~~v~l~~P~~~~~p~~~---~~~a~~~G~------~v~i~~d~~eav~~AD~tdvw~~~RiQ~Ermg~~~~~~~~~~~~~  272 (525)
T PRK13376        202 VKVDLIAPEELAMPEHY---VEKMKKNGF------EVRIFSSIEEYLSQKDVAKIWYFTRLQLERMGEDILEKEHILRKA  272 (525)
T ss_pred             cEEEEECCccccCCHHH---HHHHHHcCC------eEEEEcCHHHHhccCCccceEEEeccccccCCCccchhHHHHhcC
Confidence            99999986432110000   000000110      011247899999999942  22       11110     00  24


Q ss_pred             CcCCHHHHhhhCCCCcEEEEcc
Q 024297          241 KLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       241 ~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ..++++.++ .+|++++|.-+.
T Consensus       273 y~vt~elm~-~ak~~ai~MHcL  293 (525)
T PRK13376        273 VTFRKEFLD-KLPEGVKFYHPL  293 (525)
T ss_pred             cEECHHHHh-ccCCCCEEECCC
Confidence            567899999 899999988765

>PRK08328 hypothetical protein; Provisional

Probab=96.40  E-value=0.0057  Score=53.43  Aligned_cols=102  Identities=25%  Similarity=0.289  Sum_probs=62.6

Q ss_pred             CCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccc-----hhh--------------hc
Q 024297          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSS-----ALA--------------VK  202 (269)
Q Consensus       143 w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~-----~~~--------------~~  202 (269)
                      |.......|.+++|.|+|.|.+|.++++.|...|. +++.+|...-.. .....+.     +..              ..
T Consensus        17 ~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~-sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~n   95 (231)
T PRK08328         17 FGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPEL-SNLNRQILHWEEDLGKNPKPLSAKWKLERFN   95 (231)
T ss_pred             cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccCh-hhhccccccChhhcCchHHHHHHHHHHHHhC
Confidence            55545577999999999999999999999999998 688888543221 0000000     000              00


Q ss_pred             cccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHH
Q 024297          203 NGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSS  246 (269)
Q Consensus       203 ~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~  246 (269)
                      ++..-.........++++++++++|+|+.++- +.+++.+++..
T Consensus        96 p~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d-~~~~r~~l~~~  138 (231)
T PRK08328         96 SDIKIETFVGRLSEENIDEVLKGVDVIVDCLD-NFETRYLLDDY  138 (231)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHH
Confidence            00000000001122456788999999999986 45677777753

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=96.40  E-value=0.0031  Score=63.74  Aligned_cols=109  Identities=14%  Similarity=0.012  Sum_probs=68.3

Q ss_pred             CEEEEEecCchHHHHHHHhc-cCCCEEEEEcCCCCCccccc---cccchhhhcccccccc-----ccccCCCCCHHHHHh
Q 024297          154 KTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVS---CQSSALAVKNGIIDDL-----VDEKGCHEDIFEFAS  224 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~~~~~~~l~ell~  224 (269)
                      ++|+|||.|.||..+|..+. ..|++|+.+|++.+.-....   .......+..|.+...     ........++ +.++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence            58999999999999999987 58999999998754311100   0000011111111110     0011112456 4679


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      .||+|+=++|-..+.+.-+-++.=+ .++++++|....-+
T Consensus       384 ~adlViEav~E~l~~K~~v~~~l~~-~~~~~~ilasnTS~  422 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMVKDIEQ-ECAAHTIFASNTSS  422 (699)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHh-hCCCCcEEEeCCCC
Confidence            9999999999887776655554445 78999888765443

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=96.39  E-value=0.0042  Score=61.42  Aligned_cols=109  Identities=18%  Similarity=0.141  Sum_probs=67.5

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhcc----cc------------------
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKN----GI------------------  205 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~----~~------------------  205 (269)
                      ..|++.+|+|+|.|.+|..+|+.|.+.|. +++++|...-.. .....+.-|+..+    |.                  
T Consensus       334 ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~-SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~  412 (664)
T TIGR01381       334 ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSY-SNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQ  412 (664)
T ss_pred             HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECC-CccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcE
Confidence            67899999999999999999999999999 688888432110 0010111111110    00                  


Q ss_pred             cccccccc------C----------CCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          206 IDDLVDEK------G----------CHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       206 ~~~~~~~~------~----------~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +.......      .          ....+.++++++|+|+.++. +.++|.+++..-..    .+..+||.+-
T Consensus       413 i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tD-n~esR~L~n~~c~~----~~kplI~aAl  481 (664)
T TIGR01381       413 ATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLD-SREARWLPTVLCSR----HKKIAISAAL  481 (664)
T ss_pred             EEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCC-CHHHHHHHHHHHHH----hCCCEEEEEe
Confidence            00000000      0          01247789999999999987 77889988874433    3556666553

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.38  E-value=0.015  Score=52.61  Aligned_cols=35  Identities=26%  Similarity=0.325  Sum_probs=30.2

Q ss_pred             CEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  188 (269)
                      ++|+|||.|.+|..+|..+...|. +|..+|++.+.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~   38 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGV   38 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCch
Confidence            589999999999999999987654 99999986544

>PRK06444 prephenate dehydrogenase; Provisional

Probab=96.38  E-value=0.006  Score=52.07  Aligned_cols=27  Identities=26%  Similarity=0.396  Sum_probs=24.8

Q ss_pred             EEEEEec-CchHHHHHHHhccCCCEEEE
Q 024297          155 TVFILGF-GNIGVELAKRLRPFGVKIIA  181 (269)
Q Consensus       155 ~vgIiG~-G~iG~~~a~~l~~~G~~V~~  181 (269)
                      +++|||. |.+|+.+++.++..|+.|..
T Consensus         2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~~   29 (197)
T PRK06444          2 MEIIIGKNGRLGRVLCSILDDNGLGVYI   29 (197)
T ss_pred             EEEEEecCCcHHHHHHHHHHhCCCEEEE
Confidence            7999998 99999999999999999863

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=96.35  E-value=0.011  Score=54.74  Aligned_cols=96  Identities=27%  Similarity=0.190  Sum_probs=55.9

Q ss_pred             CEEEEEec-CchHHHHHHHhccC-CCEEEEE-cCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          154 KTVFILGF-GNIGVELAKRLRPF-GVKIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~~-G~~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      .+|+|+|. |.+|+++++.|..+ +.++.+. ++...........     +++  ............+.++++.++|+|+
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~-----~~~--l~~~~~~~~~~~~~~~~~~~~DvVf   73 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEV-----HPH--LRGLVDLNLEPIDEEEIAEDADVVF   73 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHh-----Ccc--ccccCCceeecCCHHHhhcCCCEEE
Confidence            47999998 99999999999987 7788843 5332111100000     000  0000000001124566667899999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +|+|..      ..++...+..+.|..+|+.+
T Consensus        74 ~alP~~------~s~~~~~~~~~~G~~VIDlS   99 (346)
T TIGR01850        74 LALPHG------VSAELAPELLAAGVKVIDLS   99 (346)
T ss_pred             ECCCch------HHHHHHHHHHhCCCEEEeCC
Confidence            999933      23444441346788888876

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.34  E-value=0.012  Score=54.48  Aligned_cols=30  Identities=20%  Similarity=0.458  Sum_probs=26.1

Q ss_pred             EEEEEecCchHHHHHHHhccC-CCEEEEEcC
Q 024297          155 TVFILGFGNIGVELAKRLRPF-GVKIIATKR  184 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~  184 (269)
                      +|||+|+|.||+.+++.+... +++|.+...
T Consensus         3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d   33 (341)
T PRK04207          3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAK   33 (341)
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCcEEEEEEC
Confidence            799999999999999988854 789888764

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.33  E-value=0.0045  Score=57.92  Aligned_cols=107  Identities=23%  Similarity=0.262  Sum_probs=62.8

Q ss_pred             CCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccc--------------cchhhh--ccc
Q 024297          142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQ--------------SSALAV--KNG  204 (269)
Q Consensus       142 ~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~--------------~~~~~~--~~~  204 (269)
                      .|.......+.+++|.|+|.|.+|..+++.|...|. +++.+|+..-.......+              .....+  -|.
T Consensus       124 ~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np  203 (376)
T PRK08762        124 EVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNP  203 (376)
T ss_pred             hcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCC
Confidence            354433467899999999999999999999999999 799999752110000000              000000  000


Q ss_pred             ccc-ccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297          205 IID-DLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS  249 (269)
Q Consensus       205 ~~~-~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~  249 (269)
                      .+. ..........++.++++++|+|+.+.- +.+++.++++...+
T Consensus       204 ~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d-~~~~r~~ln~~~~~  248 (376)
T PRK08762        204 DVQVEAVQERVTSDNVEALLQDVDVVVDGAD-NFPTRYLLNDACVK  248 (376)
T ss_pred             CCEEEEEeccCChHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence            000 000111122346778999999998875 45677777764433

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=96.31  E-value=0.023  Score=50.29  Aligned_cols=121  Identities=15%  Similarity=0.157  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccC----CC-------EEEEEcC
Q 024297          116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF----GV-------KIIATKR  184 (269)
Q Consensus       116 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~----G~-------~V~~~~~  184 (269)
                      +|--+++.+++.+|-.                ++.|.+.++.|+|.|..|-.+|+++...    |.       +|+.+|+
T Consensus         4 TaaV~lAgll~Al~~~----------------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~   67 (255)
T PF03949_consen    4 TAAVVLAGLLNALRVT----------------GKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDS   67 (255)
T ss_dssp             HHHHHHHHHHHHHHHH----------------TS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEET
T ss_pred             hHHHHHHHHHHHHHHh----------------CCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEec
Confidence            5667888888888864                6789999999999999999999999877    88       4999997


Q ss_pred             CCCCccccccccchhhhccccccccccccCCC---CCHHHHHhhC--CEEEEecCCCccccCcCCHHHHhhhCCC---Cc
Q 024297          185 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCH---EDIFEFASKA--DVVVCCLSLNKQTVKLCSSSLSSKSMFF---AT  256 (269)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~~a--Dvvv~~lp~t~~t~~li~~~~l~~~mk~---ga  256 (269)
                      ..--.....+.       +..-..........   .+|.|+++.+  |+++-+-    ...+.|+++.++ .|.+   ..
T Consensus        68 ~Gll~~~r~~l-------~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~-~Ma~~~erP  135 (255)
T PF03949_consen   68 KGLLTDDREDL-------NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVR-AMAKHNERP  135 (255)
T ss_dssp             TEEEBTTTSSH-------SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHH-HCHHHSSSE
T ss_pred             cceEeccCccC-------ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHH-HHhccCCCC
Confidence            64321110000       00001122222222   4899999999  9988773    245899999999 9987   77


Q ss_pred             EEEEccCC
Q 024297          257 YVVFMFQG  264 (269)
Q Consensus       257 ~lIN~~RG  264 (269)
                      ++.=.|..
T Consensus       136 IIF~LSNP  143 (255)
T PF03949_consen  136 IIFPLSNP  143 (255)
T ss_dssp             EEEE-SSS
T ss_pred             EEEECCCC
Confidence            77766543

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.29  E-value=0.0063  Score=52.50  Aligned_cols=39  Identities=28%  Similarity=0.265  Sum_probs=34.9

Q ss_pred             ccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCC
Q 024297          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (269)
Q Consensus       147 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  185 (269)
                      ....|..++|+|+|.|.+|..+|+.|...|. +++.+|..
T Consensus        22 ~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         22 LLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            3467999999999999999999999999998 59999875

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.28  E-value=0.0096  Score=54.54  Aligned_cols=95  Identities=22%  Similarity=0.230  Sum_probs=61.2

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh---hCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS---KAD  227 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aD  227 (269)
                      .|++|.|+|.|.+|+.+++.++..|+ +|++++++..+.....+        -| ++..+..  ...++.++..   ..|
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~--------lG-a~~vi~~--~~~~~~~~~~~~g~~D  237 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE--------MG-ADKLVNP--QNDDLDHYKAEKGYFD  237 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH--------cC-CcEEecC--CcccHHHHhccCCCCC
Confidence            58899999999999999999999999 68888876554211110        01 0011110  1123444332   379


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +++-+.... .   .+ ...++ .++++..++.+|-
T Consensus       238 ~vid~~G~~-~---~~-~~~~~-~l~~~G~iv~~G~  267 (343)
T PRK09880        238 VSFEVSGHP-S---SI-NTCLE-VTRAKGVMVQVGM  267 (343)
T ss_pred             EEEECCCCH-H---HH-HHHHH-HhhcCCEEEEEcc
Confidence            998886521 1   12 34677 8999999999874

>PRK07411 hypothetical protein; Validated

Probab=96.27  E-value=0.0045  Score=58.27  Aligned_cols=109  Identities=19%  Similarity=0.152  Sum_probs=66.0

Q ss_pred             CCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCcccccccc-----chhh-------------hcc
Q 024297          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQS-----SALA-------------VKN  203 (269)
Q Consensus       143 w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~-----~~~~-------------~~~  203 (269)
                      |.......|..++|+|+|.|.+|..+++.|...|. +++.+|...-.. ......     .+..             ...
T Consensus        28 ~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~-sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np  106 (390)
T PRK07411         28 VGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDS-SNLQRQVIHGTSWVGKPKIESAKNRILEINP  106 (390)
T ss_pred             cCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecc-cccCcCcccChHHCCCcHHHHHHHHHHHHCC
Confidence            44444467999999999999999999999999998 688888542221 000000     0000             000


Q ss_pred             ccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCC
Q 024297          204 GIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFF  254 (269)
Q Consensus       204 ~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~  254 (269)
                      +.--.........++..+++.++|+|+.+.- +.+++.++|....+ .-+|
T Consensus       107 ~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~-~~~p  155 (390)
T PRK07411        107 YCQVDLYETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVL-LNKP  155 (390)
T ss_pred             CCeEEEEecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH-cCCC
Confidence            0000000011122346688999998888875 56788888876655 4333

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.27  E-value=0.0065  Score=54.86  Aligned_cols=112  Identities=14%  Similarity=0.090  Sum_probs=62.5

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      .++.++++.|+|.|..+++++..|...|+ +|++++|+.............+....+. ............+.+.+.++|
T Consensus       120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~-~~~~~~~~~~~~l~~~~~~aD  198 (288)
T PRK12749        120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDC-VVTVTDLADQQAFAEALASAD  198 (288)
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCc-eEEEechhhhhhhhhhcccCC
Confidence            45788999999999999999999988897 7999999853110100000000000000 000000000112344567899


Q ss_pred             EEEEecCCCcc--ccC-cCCHHHHhhhCCCCcEEEEccCC
Q 024297          228 VVVCCLSLNKQ--TVK-LCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       228 vvv~~lp~t~~--t~~-li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +||++.|.--.  +.. ++..  .. .++++.+++++--.
T Consensus       199 ivINaTp~Gm~~~~~~~~~~~--~~-~l~~~~~v~D~vY~  235 (288)
T PRK12749        199 ILTNGTKVGMKPLENESLVND--IS-LLHPGLLVTECVYN  235 (288)
T ss_pred             EEEECCCCCCCCCCCCCCCCc--HH-HCCCCCEEEEecCC
Confidence            99999986422  111 2111  23 56778888776533

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.27  E-value=0.0073  Score=47.51  Aligned_cols=68  Identities=24%  Similarity=0.299  Sum_probs=42.2

Q ss_pred             EEEEEec-CchHHHHHHHhcc-CCCE-EEEEcCCCCCcc-ccccccchhhhccccccccccccC--CCCCHHHHHhhCCE
Q 024297          155 TVFILGF-GNIGVELAKRLRP-FGVK-IIATKRSWASHS-QVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV  228 (269)
Q Consensus       155 ~vgIiG~-G~iG~~~a~~l~~-~G~~-V~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDv  228 (269)
                      +|+|+|+ |+||+.+++.+.. -|++ |-+++++.++.. .....      .    ... ...+  ..+++++++.++|+
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~------~----~~~-~~~~~~v~~~l~~~~~~~DV   70 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGE------L----AGI-GPLGVPVTDDLEELLEEADV   70 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHH------H----CTS-ST-SSBEBS-HHHHTTH-SE
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhh------h----hCc-CCcccccchhHHHhcccCCE
Confidence            7999999 9999999999997 6898 555555542210 00000      0    000 0111  24789999999999


Q ss_pred             EEEec
Q 024297          229 VVCCL  233 (269)
Q Consensus       229 vv~~l  233 (269)
                      ++-..
T Consensus        71 vIDfT   75 (124)
T PF01113_consen   71 VIDFT   75 (124)
T ss_dssp             EEEES
T ss_pred             EEEcC
Confidence            88775

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=96.26  E-value=0.0094  Score=58.93  Aligned_cols=75  Identities=20%  Similarity=0.256  Sum_probs=51.5

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      .....|+|||||-|..|+.+++.++.+|++|+++|.++.....   +..+        .....++.+.+.+.++.+++|+
T Consensus        18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~---~~AD--------~~~v~~~~D~~~l~~~a~~~dv   86 (577)
T PLN02948         18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPAS---SVAA--------RHVVGSFDDRAAVREFAKRCDV   86 (577)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchh---hhCc--------eeeeCCCCCHHHHHHHHHHCCE
Confidence            4578899999999999999999999999999999986542110   0000        0011111123347777889999


Q ss_pred             EEEecC
Q 024297          229 VVCCLS  234 (269)
Q Consensus       229 vv~~lp  234 (269)
                      |+....
T Consensus        87 It~e~e   92 (577)
T PLN02948         87 LTVEIE   92 (577)
T ss_pred             EEEecC
Confidence            877644

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.25  E-value=0.0094  Score=55.65  Aligned_cols=105  Identities=17%  Similarity=0.213  Sum_probs=66.5

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccccccc------CCCCCHHHHHhhCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK------GCHEDIFEFASKAD  227 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~ell~~aD  227 (269)
                      ++|.|+|.|=+|...+-.|..+|.+|+.+|....+-...-...++. +-.|. +++..+.      ....+.++.++.+|
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI-~EpgL-e~ll~~~~~~gRl~fTtd~~~a~~~ad   78 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPI-YEPGL-EELLKENLASGRLRFTTDYEEAVKDAD   78 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCC-cCccH-HHHHHhccccCcEEEEcCHHHHHhcCC
Confidence            4799999999999999999999999999998665421110000000 00111 1222211      12367889999999


Q ss_pred             EEEEecCCCccccCcCCHH--------HHhhhCCCCcEEEEc
Q 024297          228 VVVCCLSLNKQTVKLCSSS--------LSSKSMFFATYVVFM  261 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~--------~l~~~mk~ga~lIN~  261 (269)
                      ++++++|-.+...+-+|-.        ..+ .++..+++|+=
T Consensus        79 v~fIavgTP~~~dg~aDl~~V~ava~~i~~-~~~~~~vvV~K  119 (414)
T COG1004          79 VVFIAVGTPPDEDGSADLSYVEAVAKDIGE-ILDGKAVVVIK  119 (414)
T ss_pred             EEEEEcCCCCCCCCCccHHHHHHHHHHHHh-hcCCCeEEEEc
Confidence            9999999554445555432        333 56666777764

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.22  E-value=0.0079  Score=45.95  Aligned_cols=84  Identities=15%  Similarity=0.082  Sum_probs=53.8

Q ss_pred             chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccc--cccCCCCCHHHHHhhCCEEEEecCCCcccc
Q 024297          163 NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV--DEKGCHEDIFEFASKADVVVCCLSLNKQTV  240 (269)
Q Consensus       163 ~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDvvv~~lp~t~~t~  240 (269)
                      +-+..+++.|+..|++|.+||+........               ...  ......+++++.++.+|+||++.+.. +-+
T Consensus        17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~   80 (106)
T PF03720_consen   17 SPALELIEELKERGAEVSVYDPYVDEEEIK---------------ELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFR   80 (106)
T ss_dssp             -HHHHHHHHHHHTT-EEEEE-TTSHHHHHH---------------HHCHHHCEEEESSHHHHHTTESEEEESS--G-GGG
T ss_pred             CHHHHHHHHHHHCCCEEEEECCccChHHHH---------------hhCCccceEEecCHHHHhcCCCEEEEEecCH-HHh
Confidence            446889999999999999999876542110               000  01112368899999999999998844 444


Q ss_pred             CcCCHHHHhhhCCCCcEEEEccCC
Q 024297          241 KLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       241 ~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      . ++-+.+...|+++.++|++ ||
T Consensus        81 ~-l~~~~~~~~~~~~~~iiD~-~~  102 (106)
T PF03720_consen   81 E-LDWEEIAKLMRKPPVIIDG-RN  102 (106)
T ss_dssp             C-CGHHHHHHHSCSSEEEEES-SS
T ss_pred             c-cCHHHHHHhcCCCCEEEEC-cc
Confidence            4 3444444379889999987 44

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=96.22  E-value=0.007  Score=55.89  Aligned_cols=66  Identities=29%  Similarity=0.266  Sum_probs=44.8

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      ||||||.|..|+.+++.++.+|++|++++.++.......   .+.        .........+.+.+++..+|+|..
T Consensus         1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~---ad~--------~~~~~~~d~~~i~~~a~~~dvit~   66 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQV---ADH--------VVLAPFFDPAAIRELAESCDVITF   66 (352)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHh---Cce--------eEeCCCCCHHHHHHHHhhCCEEEe
Confidence            589999999999999999999999999998654321100   000        011111123447788889998754

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=96.19  E-value=0.0094  Score=53.00  Aligned_cols=92  Identities=13%  Similarity=0.145  Sum_probs=52.7

Q ss_pred             CEEEEEecCchHHHHHHHhcc---CCCEEEEE-cCCCCCccccccccchhhhccccccccccccCCCCCHHHH-HhhCCE
Q 024297          154 KTVFILGFGNIGVELAKRLRP---FGVKIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKADV  228 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~---~G~~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDv  228 (269)
                      .+|||||+|.||+.+++.+..   .++++.++ ++...+. .                ..........+++++ ..+.|+
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~-~----------------~~~~~~~~~~~l~~ll~~~~Dl   65 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLP-P----------------ALAGRVALLDGLPGLLAWRPDL   65 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHH-H----------------HhhccCcccCCHHHHhhcCCCE
Confidence            689999999999999998864   24665554 4433221 0                111111234678887 468898


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCcc
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVS  268 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vd  268 (269)
                      |+=|.+.. ..     ++.-.+-|+.|.-++-++=|.+-|
T Consensus        66 VVE~A~~~-av-----~e~~~~iL~~g~dlvv~SvGALaD   99 (267)
T PRK13301         66 VVEAAGQQ-AI-----AEHAEGCLTAGLDMIICSAGALAD   99 (267)
T ss_pred             EEECCCHH-HH-----HHHHHHHHhcCCCEEEEChhHhcC
Confidence            88886521 11     111111455555555555455443

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.19  E-value=0.03  Score=50.74  Aligned_cols=89  Identities=17%  Similarity=0.128  Sum_probs=62.7

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVV  229 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvv  229 (269)
                      .+++++|||-=.=-..+++.|.+.|++|..+.-.....                     ...+  ...+.+++++++|+|
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~---------------------~~~g~~~~~~~~~~~~~ad~i   59 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDH---------------------GFTGATKSSSLEEALSDVDVI   59 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccccc---------------------ccCCceeeccHHHHhccCCEE
Confidence            37899999999988999999999999999865322110                     0011  123567889999999


Q ss_pred             EEecCCCccc---cC-------cCCHHHHhhhCCCCcEEEEccC
Q 024297          230 VCCLSLNKQT---VK-------LCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       230 v~~lp~t~~t---~~-------li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +.-+|.+.+.   +.       -++.+.++ .||++..++ +|.
T Consensus        60 i~~~p~~~~~~~i~~~~~~~~~~~~~~~l~-~l~~~~~v~-~G~  101 (296)
T PRK08306         60 ILPVPGTNDEGNVDTVFSNEKLVLTEELLE-LTPEHCTIF-SGI  101 (296)
T ss_pred             EECCccccCCceeeccccccCCcchHHHHH-hcCCCCEEE-Eec
Confidence            9998875432   11       23677899 999998433 344

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.17  E-value=0.011  Score=57.37  Aligned_cols=36  Identities=25%  Similarity=0.362  Sum_probs=33.0

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      +.|++|.|+|+|.+|.++++.|+..|++|+++|...
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~   45 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP   45 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            468899999999999999999999999999999653

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=96.14  E-value=0.06  Score=50.76  Aligned_cols=137  Identities=12%  Similarity=0.046  Sum_probs=84.2

Q ss_pred             cEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec-----C---chHHHHHHH
Q 024297          100 IKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF-----G---NIGVELAKR  171 (269)
Q Consensus       100 I~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~-----G---~iG~~~a~~  171 (269)
                      ++|.|.-+.   +..++  .+|+-++.+...+         |     .-..+.|+||+|+|-     |   ++.+.++..
T Consensus       153 pPVINa~~~---~~HPt--QaLaDl~TI~E~~---------G-----~~~~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~  213 (395)
T PRK07200        153 PTLVNLQCD---IDHPT--QSMADLLHLIEHF---------G-----GLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGL  213 (395)
T ss_pred             CeEEECCCC---CCCcH--HHHHHHHHHHHHh---------C-----CCcccCCCEEEEEeccccccCCcchHHHHHHHH
Confidence            369998654   45666  5666666665432         1     012488999999985     5   567999999


Q ss_pred             hccCCCEEEEEcCCCCCcccccccc-chhhhccccccccccccCCCCCHHHHHhhCCEEEEecCC--------------C
Q 024297          172 LRPFGVKIIATKRSWASHSQVSCQS-SALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL--------------N  236 (269)
Q Consensus       172 l~~~G~~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~--------------t  236 (269)
                      +..+|++|.++.+..-...+..... ....-.+|.      ......+++++++++|||..-.=-              .
T Consensus       214 ~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~------~i~~~~d~~eav~~aDvVYtd~W~sm~~~~er~~~~~~~  287 (395)
T PRK07200        214 MTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGG------SFRQVNSMEEAFKDADIVYPKSWAPYKVMEERTELYRAG  287 (395)
T ss_pred             HHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCC------eEEEEcCHHHHhCCCCEEEEcCeeecccccccccccccc
Confidence            9999999999987532111100000 000000110      011247899999999999987300              0


Q ss_pred             c-----------------cccCcCCHHHHhhhCCCC-cEEEEcc
Q 024297          237 K-----------------QTVKLCSSSLSSKSMFFA-TYVVFMF  262 (269)
Q Consensus       237 ~-----------------~t~~li~~~~l~~~mk~g-a~lIN~~  262 (269)
                      .                 -...-+|.+.++ ..+++ ++|.-+.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~y~v~~elm~-~a~~~~ai~MHcL  330 (395)
T PRK07200        288 DHEGIKALEKELLAQNAQHKDWHCTEEMMK-LTKDGKALYMHCL  330 (395)
T ss_pred             cchhhhhhhhhhhHHHHHccCCCcCHHHHh-ccCCCCcEEECCC
Confidence            0                 123467888998 88885 8888765

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=96.14  E-value=0.013  Score=52.87  Aligned_cols=111  Identities=17%  Similarity=0.190  Sum_probs=74.5

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC----------CCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----------CHE  217 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~  217 (269)
                      +...+..++.++|+|-+|-+++-...-.|+-|..++-.+....+..+.-..|....+  ++...-+.          ..+
T Consensus       159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~--ee~~gGYAk~ms~~~~~~q~~  236 (356)
T COG3288         159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVED--EESAGGYAKEMSEEFIAKQAE  236 (356)
T ss_pred             cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccc--cccCCCccccCCHHHHHHHHH
Confidence            466788899999999999999999999999999999655543322211111111110  01000010          012


Q ss_pred             CHHHHHhhCCEEEEe--cCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          218 DIFEFASKADVVVCC--LSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       218 ~l~ell~~aDvvv~~--lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      -+.+..++.|+||.+  .|..|. -.+++++..+ .||||+++|+.+
T Consensus       237 ~~a~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~-sMkpGSViVDlA  281 (356)
T COG3288         237 LVAEQAKEVDIVITTALIPGRPA-PKLVTAEMVA-SMKPGSVIVDLA  281 (356)
T ss_pred             HHHHHhcCCCEEEEecccCCCCC-chhhHHHHHH-hcCCCcEEEEeh
Confidence            356778899999987  454433 4688999999 999999999987

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.11  E-value=0.0082  Score=54.91  Aligned_cols=37  Identities=19%  Similarity=0.294  Sum_probs=32.7

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWAS  188 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~  188 (269)
                      .+++|+|||.|.+|..+|..+...|.  ++..+|++...
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~   43 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEK   43 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCch
Confidence            56799999999999999999998887  89999986654

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.10  E-value=0.0045  Score=58.90  Aligned_cols=75  Identities=16%  Similarity=0.210  Sum_probs=48.9

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH-HhhCCEEEEe
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDvvv~~  232 (269)
                      ++|.|+|+|.+|+.+++.|...|.+|+++++++........        ..+..-..........++++ +.++|.|+++
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~--------~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~   72 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQD--------RLDVRTVVGNGSSPDVLREAGAEDADLLIAV   72 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh--------hcCEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence            47899999999999999999999999999986654211000        00000001111122345666 7899999999


Q ss_pred             cCCC
Q 024297          233 LSLN  236 (269)
Q Consensus       233 lp~t  236 (269)
                      ++..
T Consensus        73 ~~~~   76 (453)
T PRK09496         73 TDSD   76 (453)
T ss_pred             cCCh
Confidence            8743

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=96.09  E-value=0.037  Score=52.03  Aligned_cols=132  Identities=21%  Similarity=0.180  Sum_probs=87.3

Q ss_pred             cCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCC
Q 024297           97 RCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG  176 (269)
Q Consensus        97 ~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G  176 (269)
                      +..|+|.|.-      ..-+|=.+++.+++.+|-                .|+.|+..+|.+.|.|.-|-++++.+.+.|
T Consensus       165 ~~~IPvFhDD------qqGTaiv~lA~llnalk~----------------~gk~l~d~kiv~~GAGAAgiaia~~l~~~g  222 (432)
T COG0281         165 RMNIPVFHDD------QQGTAIVTLAALLNALKL----------------TGKKLKDQKIVINGAGAAGIAIADLLVAAG  222 (432)
T ss_pred             cCCCCccccc------ccHHHHHHHHHHHHHHHH----------------hCCCccceEEEEeCCcHHHHHHHHHHHHhC
Confidence            4467777652      244677888899988886                378999999999999999999999999999


Q ss_pred             C---EEEEEcCCCCCccccccccchhhhccccccccc-cccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhC
Q 024297          177 V---KIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSM  252 (269)
Q Consensus       177 ~---~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~m  252 (269)
                      +   +|+.+|+..--.....+    .. .+---.... ........ ++.+..+|+++-+-     ..+.++++.++ .|
T Consensus       223 ~~~~~i~~~D~~G~l~~~r~~----~~-~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S-----~~G~~t~e~V~-~M  290 (432)
T COG0281         223 VKEENIFVVDRKGLLYDGRED----LT-MNQKKYAKAIEDTGERTL-DLALAGADVLIGVS-----GVGAFTEEMVK-EM  290 (432)
T ss_pred             CCcccEEEEecCCcccCCCcc----cc-cchHHHHHHHhhhccccc-cccccCCCEEEEcC-----CCCCcCHHHHH-Hh
Confidence            8   59999986432211100    00 000000000 01111111 45788999888773     23999999999 99


Q ss_pred             CCCcEEEEcc
Q 024297          253 FFATYVVFMF  262 (269)
Q Consensus       253 k~ga~lIN~~  262 (269)
                      .+..++.=++
T Consensus       291 a~~PiIfala  300 (432)
T COG0281         291 AKHPIIFALA  300 (432)
T ss_pred             ccCCEEeecC
Confidence            8887665443

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.07  E-value=0.011  Score=56.37  Aligned_cols=37  Identities=41%  Similarity=0.602  Sum_probs=34.3

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      .+.+|+|.|+|.|.+|.++|+.|...|++|+++|++.
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3678999999999999999999999999999999864

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.03  E-value=0.0081  Score=57.71  Aligned_cols=97  Identities=10%  Similarity=0.074  Sum_probs=64.3

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      .-++.|++|.|||.|.++..=++.|..+|++|+++.+...+......       ..|.+ ...    ...-..+.+..++
T Consensus         7 ~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~-------~~~~i-~~~----~~~~~~~dl~~~~   74 (457)
T PRK10637          7 FCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWA-------DAGML-TLV----EGPFDESLLDTCW   74 (457)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHH-------hCCCE-EEE----eCCCChHHhCCCE
Confidence            35799999999999999999999999999999999875443211110       01100 011    1112245678899


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +|+.+...     .-+|++... ..+...+++|++
T Consensus        75 lv~~at~d-----~~~n~~i~~-~a~~~~~lvN~~  103 (457)
T PRK10637         75 LAIAATDD-----DAVNQRVSE-AAEARRIFCNVV  103 (457)
T ss_pred             EEEECCCC-----HHHhHHHHH-HHHHcCcEEEEC
Confidence            88888542     235676666 666677888875

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=96.02  E-value=0.029  Score=54.17  Aligned_cols=114  Identities=13%  Similarity=0.060  Sum_probs=66.3

Q ss_pred             ccccCCEEEEEec----------CchHHHHHHHhccCCCEEEEEcCCCCCccccccc-cchhhhcccc--c---cccccc
Q 024297          149 ETLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALAVKNGI--I---DDLVDE  212 (269)
Q Consensus       149 ~~l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~-~~~~~~~~~~--~---~~~~~~  212 (269)
                      .++.|++|+|+|+          .+-...+++.|...|.+|.+||+........... ...+..+...  .   ......
T Consensus       320 ~~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (473)
T PLN02353        320 NTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQ  399 (473)
T ss_pred             cccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccc
Confidence            3589999999997          6788999999999999999999864321000000 0000000000  0   000000


Q ss_pred             cCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          213 KGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       213 ~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      .....++.+.++.||+|+++.+.. +.+. ++-+.+...|++..++|+. |+-
T Consensus       400 ~~~~~~~~~a~~~aD~vvi~t~~~-ef~~-l~~~~~~~~m~~~~~viD~-rn~  449 (473)
T PLN02353        400 VSVVWDAYEATKGAHGICILTEWD-EFKT-LDYQKIYDNMQKPAFVFDG-RNV  449 (473)
T ss_pred             eeeeCCHHHHhcCCCEEEECCCCh-Hhcc-cCHHHHHHhccCCCEEEEC-CCC
Confidence            011245678999999999998754 3333 3444433167766677774 543

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.02  E-value=0.0019  Score=51.97  Aligned_cols=100  Identities=22%  Similarity=0.161  Sum_probs=55.0

Q ss_pred             EEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCC
Q 024297          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL  235 (269)
Q Consensus       156 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~  235 (269)
                      |+|+|.|.||.-+|.+|+..|.+|..+.|.. .... .. ..++.+....-+.............+....+|+|++++..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~-~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa   77 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEA-IK-EQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA   77 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHH-HH-HHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHh-hh-heeEEEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence            6899999999999999999999999999866 2111 00 0011111100000000000111224567899999999874


Q ss_pred             CccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          236 NKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       236 t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      . ++...+.. ... .+.+++.++-.
T Consensus        78 ~-~~~~~l~~-l~~-~~~~~t~iv~~  100 (151)
T PF02558_consen   78 Y-QLEQALQS-LKP-YLDPNTTIVSL  100 (151)
T ss_dssp             G-GHHHHHHH-HCT-GEETTEEEEEE
T ss_pred             c-chHHHHHH-Hhh-ccCCCcEEEEE
Confidence            3 34444333 223 55666555543

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=96.01  E-value=0.0092  Score=55.60  Aligned_cols=96  Identities=9%  Similarity=0.037  Sum_probs=62.6

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHH---HHHhhCCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF---EFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---ell~~aDvvv  230 (269)
                      ..+|+||+|-||+.+|......|++|.+|+|+.++...-...       ++    .........+++   ..|+.-..|+
T Consensus         4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~-------~~----~~k~i~~~~sieefV~~Le~PRkI~   72 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAE-------RA----KGKNIVPAYSIEEFVASLEKPRKIL   72 (473)
T ss_pred             cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHh-------Cc----cCCCccccCcHHHHHHHhcCCceEE
Confidence            469999999999999999999999999999998774221110       00    000111233444   4456777788


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +.+-.-.-....|+. .+. .|.+|-++|+-|
T Consensus        73 lMVkAG~~VD~~I~~-L~p-~Le~gDIiIDGG  102 (473)
T COG0362          73 LMVKAGTPVDAVIEQ-LLP-LLEKGDIIIDGG  102 (473)
T ss_pred             EEEecCCcHHHHHHH-HHh-hcCCCCEEEeCC
Confidence            777543212334433 666 788888888754

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=96.00  E-value=0.017  Score=52.75  Aligned_cols=111  Identities=19%  Similarity=0.211  Sum_probs=67.3

Q ss_pred             cccCCEEEEEecCchHHHHHHHhcc-------CCCEEEEEcCCCCCccc--cc-----cccchhhhccccccccccccCC
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRP-------FGVKIIATKRSWASHSQ--VS-----CQSSALAVKNGIIDDLVDEKGC  215 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~-------~G~~V~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~  215 (269)
                      +..-++|+|||.|+.|+++|+.+..       |..+|..|-+...-.-.  ..     ..+...-|..|+  .......-
T Consensus        18 ~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~--~lP~NvvA   95 (372)
T KOG2711|consen   18 ERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGI--KLPENVVA   95 (372)
T ss_pred             hcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCc--cCCCCeEe
Confidence            3445799999999999999998762       34455555432221100  00     001111122221  11111113


Q ss_pred             CCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          216 HEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       216 ~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      ..++.+++.+||+++..+|.+ -+..+++. ... +.|+++..|....|=
T Consensus        96 v~dl~ea~~dADilvf~vPhQ-f~~~ic~~-l~g-~vk~~~~aISL~KG~  142 (372)
T KOG2711|consen   96 VPDLVEAAKDADILVFVVPHQ-FIPRICEQ-LKG-YVKPGATAISLIKGV  142 (372)
T ss_pred             cchHHHHhccCCEEEEeCChh-hHHHHHHH-Hhc-ccCCCCeEEEeecce
Confidence            468999999999999999954 34444433 666 899999999988773

>PRK05086 malate dehydrogenase; Provisional

Probab=95.95  E-value=0.053  Score=49.50  Aligned_cols=75  Identities=24%  Similarity=0.192  Sum_probs=45.5

Q ss_pred             CEEEEEec-CchHHHHHHHhc---cCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          154 KTVFILGF-GNIGVELAKRLR---PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~---~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      ++|+|||. |.||++++..+.   ..+.++..++++........    ++.....  ...... ...+++.+.++++|+|
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~al----Dl~~~~~--~~~i~~-~~~~d~~~~l~~~DiV   73 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAV----DLSHIPT--AVKIKG-FSGEDPTPALEGADVV   73 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceeh----hhhcCCC--CceEEE-eCCCCHHHHcCCCCEE
Confidence            58999999 999999998773   45668999998643211001    1100000  000000 0135677888999999


Q ss_pred             EEecCC
Q 024297          230 VCCLSL  235 (269)
Q Consensus       230 v~~lp~  235 (269)
                      ++++-.
T Consensus        74 IitaG~   79 (312)
T PRK05086         74 LISAGV   79 (312)
T ss_pred             EEcCCC
Confidence            999753

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.93  E-value=0.014  Score=50.40  Aligned_cols=39  Identities=28%  Similarity=0.498  Sum_probs=34.5

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .+.++++.|+|. |.||+++++.|...|++|++++|+..+
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~   41 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEA   41 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            367899999995 899999999999999999999998643

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=95.88  E-value=0.016  Score=54.49  Aligned_cols=95  Identities=18%  Similarity=0.254  Sum_probs=59.5

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccc-cccCCCCCHHH-HHhhC
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFE-FASKA  226 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~e-ll~~a  226 (269)
                      ...++|+|+|. |.+|+++.++|... +++|..+.+..........     ..++     .. .......+++. .++++
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~-----~~~~-----l~~~~~~~~~~~~~~~~~~~  105 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGS-----VFPH-----LITQDLPNLVAVKDADFSDV  105 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchh-----hCcc-----ccCccccceecCCHHHhcCC
Confidence            45569999995 99999999999988 7898888764322111000     0000     00 00001122222 24789


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|++++|..      ...+... .|+.|..+|+.+
T Consensus       106 DvVf~Alp~~------~s~~i~~-~~~~g~~VIDlS  134 (381)
T PLN02968        106 DAVFCCLPHG------TTQEIIK-ALPKDLKIVDLS  134 (381)
T ss_pred             CEEEEcCCHH------HHHHHHH-HHhCCCEEEEcC
Confidence            9999999843      3455666 677889899887

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=95.83  E-value=0.078  Score=48.94  Aligned_cols=138  Identities=12%  Similarity=-0.033  Sum_probs=83.6

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccc-cCCEEEEEecC-------chH
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETL-LGKTVFILGFG-------NIG  165 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l-~g~~vgIiG~G-------~iG  165 (269)
                      .+...+|+|.|..+.    ..++  .+|+-++.+.+++                 ..+ .|+||+|+|.|       ++.
T Consensus       132 ~a~~s~vPVINa~~~----~HPt--QaLaDl~Ti~e~~-----------------g~~~~g~ki~i~~~gd~~~~~~~v~  188 (335)
T PRK04523        132 FAKYSTVPVINMETI----THPC--QELAHALALQEHF-----------------GTTLRGKKYVLTWTYHPKPLNTAVA  188 (335)
T ss_pred             HHHhCCCCEEECCCC----CChH--HHHHHHHHHHHHh-----------------CCccCCCEEEEEEeccCcccccHHH
Confidence            345568999998653    3555  5566666665542                 236 79999877643       788


Q ss_pred             HHHHHHhccCCCEEEEEcC-CCCCcccc-ccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCC-----c-
Q 024297          166 VELAKRLRPFGVKIIATKR-SWASHSQV-SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLN-----K-  237 (269)
Q Consensus       166 ~~~a~~l~~~G~~V~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t-----~-  237 (269)
                      +.++..+..+|++|.++.+ ..-..... ...-..++-.+|+      ......+++++++++|||..-.=-.     . 
T Consensus       189 ~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~------~~~~~~d~~ea~~~aDvvy~~~w~~~~~~~~~  262 (335)
T PRK04523        189 NSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGG------SLTVSHDIDSAYAGADVVYAKSWGALPFFGNW  262 (335)
T ss_pred             HHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCC------eEEEEcCHHHHhCCCCEEEeceeeccccCCcc
Confidence            8999999999999999987 32111000 0000000000110      0112478999999999999865211     0 


Q ss_pred             c---------ccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          238 Q---------TVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       238 ~---------t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +         ....+|++.++ ..+ +++|.-+.
T Consensus       263 ~~~~~~~~~~~~y~v~~~ll~-~a~-~~i~mHcL  294 (335)
T PRK04523        263 EPEKPIRDQYQHFIVDERKMA-LTN-NGVFSHCL  294 (335)
T ss_pred             cccHHHHHhCcCCcCCHHHHh-CCC-CCEEECCC
Confidence            0         13567888888 654 77777654

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=95.81  E-value=0.017  Score=51.45  Aligned_cols=68  Identities=19%  Similarity=0.240  Sum_probs=41.8

Q ss_pred             CEEEEEecCchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhcccccccccc-ccCCCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDvvv~  231 (269)
                      .+|||||+|.||+.+++.+... ++++.++-..........              .... ......+++++-.+.|+|+.
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~--------------~~~~~~~~~~~d~~~l~~~~DvVve   67 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVR--------------RALGEAVRVVSSVDALPQRPDLVVE   67 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHh--------------hhhccCCeeeCCHHHhccCCCEEEE
Confidence            4899999999999999998865 677555432111100000              0000 01123567777456899999


Q ss_pred             ecCC
Q 024297          232 CLSL  235 (269)
Q Consensus       232 ~lp~  235 (269)
                      +.|.
T Consensus        68 ~t~~   71 (265)
T PRK13303         68 CAGH   71 (265)
T ss_pred             CCCH
Confidence            9874

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.80  E-value=0.015  Score=53.00  Aligned_cols=75  Identities=23%  Similarity=0.088  Sum_probs=47.2

Q ss_pred             CEEEEEecCchHHHHHHHhccCC--CEEEEEcCCCCCccc-cccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQ-VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      .+|+|||.|.+|..+|..|...|  .+|..+|++..+... ..+. .+......   ..  . ....+. +.+++||+|+
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl-~~~~~~~~---~~--~-i~~~d~-~~l~~aDiVi   72 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDL-AHGTPFVK---PV--R-IYAGDY-ADCKGADVVV   72 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHH-HccccccC---Ce--E-EeeCCH-HHhCCCCEEE
Confidence            37999999999999999999888  589999987654211 0000 00000000   00  0 011344 4589999999


Q ss_pred             EecCCC
Q 024297          231 CCLSLN  236 (269)
Q Consensus       231 ~~lp~t  236 (269)
                      ++.+..
T Consensus        73 ita~~~   78 (308)
T cd05292          73 ITAGAN   78 (308)
T ss_pred             EccCCC
Confidence            998853

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14805 ornithine carbamoyltransferase; Provisional

Probab=95.79  E-value=0.13  Score=46.73  Aligned_cols=134  Identities=15%  Similarity=0.087  Sum_probs=83.2

Q ss_pred             HhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec-CchHHHHHHHhc
Q 024297           95 ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF-GNIGVELAKRLR  173 (269)
Q Consensus        95 ~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~-G~iG~~~a~~l~  173 (269)
                      +...+|+|.|..+.   ...++  .+|+-++.+..++                 .++.|+||+++|= -++.+.++..+.
T Consensus       111 a~~~~vPVINa~~~---~~HPt--QaL~Dl~Ti~e~~-----------------g~l~g~kva~vGD~~~v~~S~~~~~~  168 (302)
T PRK14805        111 AEHGSVPVINALCD---LYHPC--QALADFLTLAEQF-----------------GDVSKVKLAYVGDGNNVTHSLMYGAA  168 (302)
T ss_pred             HHhCCCCEEECCCC---CCChH--HHHHHHHHHHHHh-----------------CCcCCcEEEEEcCCCccHHHHHHHHH
Confidence            34457999998664   44566  5666666665432                 2488999999996 567799999999


Q ss_pred             cCCCEEEEEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHHhhCCEEEEecCC---C----cc----
Q 024297          174 PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKADVVVCCLSL---N----KQ----  238 (269)
Q Consensus       174 ~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aDvvv~~lp~---t----~~----  238 (269)
                      .+|++|.++.+..-......   ...+      .+.....+    ..+++ +.++++|||....-.   .    ++    
T Consensus       169 ~~g~~v~~~~P~~~~~~~~~---~~~a------~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~w~~~~~~~~~~~~~~~  238 (302)
T PRK14805        169 ILGATMTVICPPGHFPDGQI---VAEA------QELAAKSGGKLVLTSDI-EAIEGHDAIYTDTWISMGDDTPLAEIKAK  238 (302)
T ss_pred             HcCCEEEEECCchhcCCHHH---HHHH------HHHHHHcCCEEEEEcCH-HHHCCCCEEEeeceEeCCCccccHHHHHh
Confidence            99999999987442211000   0000      00001111    13455 579999999984310   0    11    


Q ss_pred             -ccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          239 -TVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       239 -t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                       ...-++++.++ .+|+. +|.-+.
T Consensus       239 ~~~y~vt~~~l~-~a~~~-~vmH~l  261 (302)
T PRK14805        239 FAPYQVNKALME-KAGAT-FVMHCQ  261 (302)
T ss_pred             ccCCcCCHHHHh-cCCCC-eEECCC
Confidence             23678999999 88876 666554

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.75  E-value=0.019  Score=54.85  Aligned_cols=38  Identities=29%  Similarity=0.519  Sum_probs=34.5

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ..+++|.|+|+|.-|.++++.|...|++|+++|.++.+
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            44999999999999999999999999999999976554

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.74  E-value=0.0089  Score=53.55  Aligned_cols=89  Identities=18%  Similarity=0.129  Sum_probs=56.9

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH-HhhCCEEE
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKADVVV  230 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDvvv  230 (269)
                      ++++.|+|.|..+++++..|...|+ +|++++|+.++..                 .+..... .....++ ...+|+||
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~-----------------~la~~~~-~~~~~~~~~~~~dlvI  183 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGK-----------------ALAELYG-YEWRPDLGGIEADILV  183 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHH-----------------HHHHHhC-CcchhhcccccCCEEE
Confidence            4689999999999999999999998 5999999875421                 1111111 0000111 24689999


Q ss_pred             EecCCCccc-----cCcCCHHHHhhhCCCCcEEEEccC
Q 024297          231 CCLSLNKQT-----VKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       231 ~~lp~t~~t-----~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ++.|.--..     ...++.   . .++++.+++++--
T Consensus       184 NaTp~Gm~~~~~~~~~pi~~---~-~l~~~~~v~D~vY  217 (272)
T PRK12550        184 NVTPIGMAGGPEADKLAFPE---A-EIDAASVVFDVVA  217 (272)
T ss_pred             ECCccccCCCCccccCCCCH---H-HcCCCCEEEEeec
Confidence            999854221     112333   3 4667777777653

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.72  E-value=0.011  Score=49.45  Aligned_cols=92  Identities=21%  Similarity=0.233  Sum_probs=54.8

Q ss_pred             EEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhh---------------hc--ccccc-ccccccCC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALA---------------VK--NGIID-DLVDEKGC  215 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~---------------~~--~~~~~-~~~~~~~~  215 (269)
                      +|+|+|.|.+|..+++.|...|. +++.+|...-... ....+. +.               +.  |-... ........
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~s-Nl~Rq~-~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~   78 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPS-NLNRQQ-YFLSQIGEPKVEALKENLREINPFVKIEAINIKID   78 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCc-chhccc-ccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecC
Confidence            58999999999999999999999 5999997541100 000000 00               00  00000 00000112


Q ss_pred             CCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297          216 HEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS  249 (269)
Q Consensus       216 ~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~  249 (269)
                      .++++++++++|+|+.+.- +.+++..++....+
T Consensus        79 ~~~~~~~l~~~DlVi~~~d-~~~~r~~i~~~~~~  111 (174)
T cd01487          79 ENNLEGLFGDCDIVVEAFD-NAETKAMLAESLLG  111 (174)
T ss_pred             hhhHHHHhcCCCEEEECCC-CHHHHHHHHHHHHH
Confidence            2356788999999999954 67777766665544

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=95.71  E-value=0.025  Score=50.25  Aligned_cols=96  Identities=17%  Similarity=0.142  Sum_probs=57.4

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH--hhCCE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA--SKADV  228 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell--~~aDv  228 (269)
                      .|++|.|+|.|.+|..+++.++.+|++ |++++++..+......        -| ++...........+.++.  ...|+
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~--------~G-a~~~i~~~~~~~~~~~~~~~~g~d~  190 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS--------FG-ATALAEPEVLAERQGGLQNGRGVDV  190 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH--------cC-CcEecCchhhHHHHHHHhCCCCCCE
Confidence            688999999999999999999999996 8888765543211000        00 000110000001122222  24798


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ++-+....    ..+ ...++ .++++..++.+|
T Consensus       191 vid~~G~~----~~~-~~~~~-~l~~~G~iv~~G  218 (280)
T TIGR03366       191 ALEFSGAT----AAV-RACLE-SLDVGGTAVLAG  218 (280)
T ss_pred             EEECCCCh----HHH-HHHHH-HhcCCCEEEEec
Confidence            88876421    122 23567 889999998887

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=95.70  E-value=0.021  Score=52.53  Aligned_cols=95  Identities=16%  Similarity=0.197  Sum_probs=59.5

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC---CCccccccccchhhhccccccccccccCCCCCHH--HHHhh
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW---ASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF--EFASK  225 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--ell~~  225 (269)
                      ..|++|.|+|.|.+|+.+++.++..|++|++++++.   .+. ....       .-|.  ....  ....++.  .....
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~-~~~~-------~~Ga--~~v~--~~~~~~~~~~~~~~  238 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKA-DIVE-------ELGA--TYVN--SSKTPVAEVKLVGE  238 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHH-HHHH-------HcCC--EEec--CCccchhhhhhcCC
Confidence            367899999999999999999999999999998742   121 0000       0000  0000  0111211  12346


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      .|+|+-++...    ..+ .+.++ .++++..++.+|-
T Consensus       239 ~d~vid~~g~~----~~~-~~~~~-~l~~~G~~v~~G~  270 (355)
T cd08230         239 FDLIIEATGVP----PLA-FEALP-ALAPNGVVILFGV  270 (355)
T ss_pred             CCEEEECcCCH----HHH-HHHHH-HccCCcEEEEEec
Confidence            89999987521    122 34677 8999998888764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK06270 homoserine dehydrogenase; Provisional

Probab=95.70  E-value=0.034  Score=51.43  Aligned_cols=30  Identities=27%  Similarity=0.541  Sum_probs=24.2

Q ss_pred             CEEEEEecCchHHHHHHHhccC----------CCEEEEEc
Q 024297          154 KTVFILGFGNIGVELAKRLRPF----------GVKIIATK  183 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~----------G~~V~~~~  183 (269)
                      -+|+|+|+|.||+.+++.+...          +.+|.++.
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~   42 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIA   42 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEE
Confidence            3799999999999999998754          57766553

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.68  E-value=0.016  Score=55.87  Aligned_cols=38  Identities=21%  Similarity=0.326  Sum_probs=34.9

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      ..+.+++|.|+|+|..|+++|+.|...|++|+++|++.
T Consensus        11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   48 (473)
T PRK00141         11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE   48 (473)
T ss_pred             ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            45788999999999999999999999999999999754

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=95.65  E-value=0.029  Score=51.89  Aligned_cols=94  Identities=26%  Similarity=0.191  Sum_probs=53.2

Q ss_pred             CEEEEEec-CchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHH-HHhhCCEEE
Q 024297          154 KTVFILGF-GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE-FASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aDvvv  230 (269)
                      .+|+|+|. |.+|+.+++.|... ++++.++.+...........     ++  .......  ....++++ ...++|+|+
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~-----~~--~~~~~~~--~~~~~~~~~~~~~vD~Vf   73 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDV-----HP--HLRGLVD--LVLEPLDPEILAGADVVF   73 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHh-----Cc--ccccccC--ceeecCCHHHhcCCCEEE
Confidence            58999996 99999999999987 78876654422111000000     00  0000000  01122222 457899999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +|+|.. .     ..+......+.|..+|+.+
T Consensus        74 ~alP~~-~-----~~~~v~~a~~aG~~VID~S   99 (343)
T PRK00436         74 LALPHG-V-----SMDLAPQLLEAGVKVIDLS   99 (343)
T ss_pred             ECCCcH-H-----HHHHHHHHHhCCCEEEECC
Confidence            999842 2     2333331446789999887

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=95.65  E-value=0.054  Score=49.48  Aligned_cols=36  Identities=17%  Similarity=0.324  Sum_probs=30.1

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCC
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWAS  188 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~  188 (269)
                      ..||+|||.|.+|..+|..+...|.  ++..+|.+.+.
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~   40 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDK   40 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccH
Confidence            4599999999999999998876554  79999987643

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=95.63  E-value=0.011  Score=55.59  Aligned_cols=103  Identities=16%  Similarity=0.138  Sum_probs=63.7

Q ss_pred             CCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccc---------------
Q 024297          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGII---------------  206 (269)
Q Consensus       143 w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  206 (269)
                      |.......|.+++|.|+|.|.+|..+|+.|...|. +++.+|...-.. .....+  +.+...++               
T Consensus        32 ~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~-sNL~Rq--~l~~~~diG~~Ka~~a~~~l~~~  108 (392)
T PRK07878         32 VGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDE-SNLQRQ--VIHGQSDVGRSKAQSARDSIVEI  108 (392)
T ss_pred             cCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecC-cccccc--cccChhcCCChHHHHHHHHHHHh
Confidence            54444467999999999999999999999999998 699988543211 000000  00000000               


Q ss_pred             -c--cc--ccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297          207 -D--DL--VDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS  249 (269)
Q Consensus       207 -~--~~--~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~  249 (269)
                       +  ..  ........+..++++++|+|+.+.- +.+++.++|+...+
T Consensus       109 np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~  155 (392)
T PRK07878        109 NPLVNVRLHEFRLDPSNAVELFSQYDLILDGTD-NFATRYLVNDAAVL  155 (392)
T ss_pred             CCCcEEEEEeccCChhHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHH
Confidence             0  00  0001122346788999999988764 66788888876554

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=95.63  E-value=0.0047  Score=54.80  Aligned_cols=77  Identities=23%  Similarity=0.272  Sum_probs=44.1

Q ss_pred             HHHHhccCC--CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCH
Q 024297          168 LAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSS  245 (269)
Q Consensus       168 ~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~  245 (269)
                      +|+.|+..|  .+|+++|++.....        .+...|.++..      ..+ .+.++++|+|++|+|.. .+..++.+
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~--------~a~~~g~~~~~------~~~-~~~~~~~DlvvlavP~~-~~~~~l~~   64 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLE--------AALELGIIDEA------STD-IEAVEDADLVVLAVPVS-AIEDVLEE   64 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHH--------HHHHTTSSSEE------ESH-HHHGGCCSEEEE-S-HH-HHHHHHHH
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHH--------HHHHCCCeeec------cCC-HhHhcCCCEEEEcCCHH-HHHHHHHH
Confidence            466667666  89999998765421        11122221111      123 57899999999999944 45555443


Q ss_pred             HHHhhhCCCCcEEEEcc
Q 024297          246 SLSSKSMFFATYVVFMF  262 (269)
Q Consensus       246 ~~l~~~mk~ga~lIN~~  262 (269)
                       ... .+++|+++++++
T Consensus        65 -~~~-~~~~~~iv~Dv~   79 (258)
T PF02153_consen   65 -IAP-YLKPGAIVTDVG   79 (258)
T ss_dssp             -HHC-GS-TTSEEEE--
T ss_pred             -hhh-hcCCCcEEEEeC
Confidence             445 789999999986

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.62  E-value=0.013  Score=50.89  Aligned_cols=41  Identities=15%  Similarity=0.132  Sum_probs=36.1

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .-.+.|++|.|||.|.+|..=++.|..+|++|+++.+...+
T Consensus        20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~   60 (223)
T PRK05562         20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSK   60 (223)
T ss_pred             EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCH
Confidence            35678999999999999999999999999999999976544

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.59  E-value=0.031  Score=58.54  Aligned_cols=111  Identities=14%  Similarity=0.009  Sum_probs=67.5

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccc---cccc-------------hhhhcccccccccc--
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS---CQSS-------------ALAVKNGIIDDLVD--  211 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~---~~~~-------------~~~~~~~~~~~~~~--  211 (269)
                      .+.-.++.|+|.|++|+..++.+..+|++ . +++..-+.....   ....             ...+.+++....++  
T Consensus       200 gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~  277 (1042)
T PLN02819        200 GICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKA  277 (1042)
T ss_pred             CCCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchh
Confidence            34457899999999999999999999888 2 332211100000   0000             00000000000000  


Q ss_pred             cc----CCC--CCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCc----EEEEcc
Q 024297          212 EK----GCH--EDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFAT----YVVFMF  262 (269)
Q Consensus       212 ~~----~~~--~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga----~lIN~~  262 (269)
                      ++    ..+  .-+++.++.+|+||.++-..+.+-.+++++.+.+.||+|+    ++++++
T Consensus       278 ~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs  338 (1042)
T PLN02819        278 DYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT  338 (1042)
T ss_pred             hhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence            00    011  1256789999999999988888899999994443899998    888876

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.57  E-value=0.0092  Score=59.30  Aligned_cols=99  Identities=20%  Similarity=0.235  Sum_probs=59.4

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH-HhhCCEEEE
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKADVVVC  231 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDvvv~  231 (269)
                      ...|.|+|+|++|+.+++.|...|.+++++|.+++.-.....  .++.+-.|       +..+.+-|+++ +.+||.++.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--~g~~v~~G-------Dat~~~~L~~agi~~A~~vv~  470 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK--YGYKVYYG-------DATQLELLRAAGAEKAEAIVI  470 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--CCCeEEEe-------eCCCHHHHHhcCCccCCEEEE
Confidence            357889999999999999999999999999987654211110  01101111       11111223322 568999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +.+..+++..++.  ..+ .+.|...+|--+|
T Consensus       471 ~~~d~~~n~~i~~--~~r-~~~p~~~IiaRa~  499 (601)
T PRK03659        471 TCNEPEDTMKIVE--LCQ-QHFPHLHILARAR  499 (601)
T ss_pred             EeCCHHHHHHHHH--HHH-HHCCCCeEEEEeC
Confidence            9986655444322  333 4556655554433

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=95.57  E-value=0.03  Score=51.39  Aligned_cols=38  Identities=16%  Similarity=0.187  Sum_probs=32.6

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  188 (269)
                      +..+||+|||.|.+|..+|..+...|. +|..+|.+++.
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~   42 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI   42 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence            345799999999999999999887774 89999987764

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=95.56  E-value=0.028  Score=47.38  Aligned_cols=72  Identities=15%  Similarity=0.138  Sum_probs=52.3

Q ss_pred             CEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      ++|+||| -|.+|..+++-++.-|.+|+++-|++.+-..-.    +.       .-...+..+.+++.+.+...|+||.+
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~----~~-------~i~q~Difd~~~~a~~l~g~DaVIsA   69 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQ----GV-------TILQKDIFDLTSLASDLAGHDAVISA   69 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccc----cc-------eeecccccChhhhHhhhcCCceEEEe
Confidence            5899999 699999999999999999999999887632100    00       00111222456777899999999998


Q ss_pred             cCCC
Q 024297          233 LSLN  236 (269)
Q Consensus       233 lp~t  236 (269)
                      .-..
T Consensus        70 ~~~~   73 (211)
T COG2910          70 FGAG   73 (211)
T ss_pred             ccCC
Confidence            6543

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=95.55  E-value=0.13  Score=49.09  Aligned_cols=97  Identities=18%  Similarity=0.111  Sum_probs=64.2

Q ss_pred             cccccCCEEEEEec----------CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCC
Q 024297          148 GETLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE  217 (269)
Q Consensus       148 ~~~l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (269)
                      +.++.|++|+|+|+          .+-+..+++.|...|.+|.+||+......                  .....+ ..
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~------------------~~~~~~-~~  369 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEE------------------VRREYG-II  369 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhH------------------HHHhcC-cc
Confidence            45689999999997          67899999999999999999998643210                  000111 11


Q ss_pred             CHHH-HHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297          218 DIFE-FASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       218 ~l~e-ll~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      .+++ .+..+|+|+++.... +.+. ++.+.+.+.|+...++|+ +|+-+
T Consensus       370 ~~~~~~~~~ad~vvi~t~h~-~f~~-~~~~~~~~~~~~~~~iiD-~r~~~  416 (425)
T PRK15182        370 PVSEVKSSHYDAIIVAVGHQ-QFKQ-MGSEDIRGFGKDKHVLYD-LKYVL  416 (425)
T ss_pred             cchhhhhcCCCEEEEccCCH-Hhhc-CCHHHHHHhcCCCCEEEE-CCCCC
Confidence            1222 367899999998744 3333 455566535665568887 46643

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=95.52  E-value=0.011  Score=52.40  Aligned_cols=73  Identities=19%  Similarity=0.176  Sum_probs=45.7

Q ss_pred             EEEEec-CchHHHHHHHhccCC----CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          156 VFILGF-GNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       156 vgIiG~-G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      |+|||. |.+|..+|..+...|    .+|..+|.+..........-..+..+.     ........+++.+.+++||+|+
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-----~~~~i~~~~d~~~~~~~aDiVv   75 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-----ADIKVSITDDPYEAFKDADVVI   75 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-----cCcEEEECCchHHHhCCCCEEE
Confidence            589999 999999999988777    789999987644211110000000000     0000112356788999999999


Q ss_pred             Eec
Q 024297          231 CCL  233 (269)
Q Consensus       231 ~~l  233 (269)
                      .+.
T Consensus        76 ~t~   78 (263)
T cd00650          76 ITA   78 (263)
T ss_pred             ECC
Confidence            975

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.52  E-value=0.012  Score=53.47  Aligned_cols=33  Identities=33%  Similarity=0.363  Sum_probs=30.7

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      ++|+|+|.|.||.-+|-+|...|.+|+.++|..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            479999999999999999999999999999864

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=95.50  E-value=0.029  Score=51.42  Aligned_cols=91  Identities=12%  Similarity=0.044  Sum_probs=57.0

Q ss_pred             cCCEEEEEecCchHHHHHHHhcc-CC-CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh--hCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRP-FG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KAD  227 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~-~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aD  227 (269)
                      .|.+|.|+|.|.+|..+++.++. +| .+|++++++..+...                  ....+....++++..  ..|
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~------------------a~~~~~~~~~~~~~~~~g~d  224 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDL------------------FSFADETYLIDDIPEDLAVD  224 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHH------------------HhhcCceeehhhhhhccCCc
Confidence            57899999999999999999885 54 689999987544211                  111110011112222  379


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +|+-++... .+...+ .+.++ .++++..++.+|-
T Consensus       225 ~viD~~G~~-~~~~~~-~~~~~-~l~~~G~iv~~G~  257 (341)
T cd08237         225 HAFECVGGR-GSQSAI-NQIID-YIRPQGTIGLMGV  257 (341)
T ss_pred             EEEECCCCC-ccHHHH-HHHHH-hCcCCcEEEEEee
Confidence            998887521 111222 33677 8999998888763

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=95.50  E-value=0.17  Score=49.74  Aligned_cols=134  Identities=12%  Similarity=0.112  Sum_probs=88.8

Q ss_pred             CCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhcc---
Q 024297           98 CGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRP---  174 (269)
Q Consensus        98 ~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~---  174 (269)
                      ..|.+.|.-      -..+|--+++.+|+.+|-                .++.|.+.+|.|+|.|..|-.+|+.+..   
T Consensus       288 ~~i~~FnDD------iQGTaaV~lAgll~A~r~----------------~g~~l~d~riv~~GAGsAgigia~ll~~~~~  345 (581)
T PLN03129        288 TTHLCFNDD------IQGTAAVALAGLLAALRA----------------TGGDLADQRILFAGAGEAGTGIAELIALAMS  345 (581)
T ss_pred             cCCCEeccc------cchHHHHHHHHHHHHHHH----------------hCCchhhceEEEECCCHHHHHHHHHHHHHHH
Confidence            356665542      244677888888888885                3678999999999999999999998886   


Q ss_pred             --CCC-------EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh--CCEEEEecCCCccccCcC
Q 024297          175 --FGV-------KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVVCCLSLNKQTVKLC  243 (269)
Q Consensus       175 --~G~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDvvv~~lp~t~~t~~li  243 (269)
                        .|.       +++.+|+..--.....+.-.++-      ...........+|.++++.  .|+++-+--    .-+.|
T Consensus       346 ~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k------~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~F  415 (581)
T PLN03129        346 RQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFK------KPFAHDHEPGASLLEAVKAIKPTVLIGLSG----VGGTF  415 (581)
T ss_pred             hhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHH------HHHHhhcccCCCHHHHHhccCCCEEEEecC----CCCCC
Confidence              476       79999976532111000000000      0111111134689999998  898887631    23799


Q ss_pred             CHHHHhhhCC---CCcEEEEccCC
Q 024297          244 SSSLSSKSMF---FATYVVFMFQG  264 (269)
Q Consensus       244 ~~~~l~~~mk---~ga~lIN~~RG  264 (269)
                      +++.++ .|.   +..++.=.|..
T Consensus       416 t~evi~-~Ma~~~~rPIIFaLSNP  438 (581)
T PLN03129        416 TKEVLE-AMASLNERPIIFALSNP  438 (581)
T ss_pred             CHHHHH-HHHhcCCCCEEEECCCC
Confidence            999999 995   67777666544

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.48  E-value=0.021  Score=55.03  Aligned_cols=36  Identities=25%  Similarity=0.218  Sum_probs=33.1

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      +.|++|+|+|+|.-|+++|+.|...|++|+++|...
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~   41 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCN   41 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence            468999999999999999999999999999999543

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=95.48  E-value=0.024  Score=46.10  Aligned_cols=84  Identities=21%  Similarity=0.127  Sum_probs=54.3

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      ..+++|++||+=   +.+++.++..+.+|.++|+++......              ....    .....++++++||+|+
T Consensus         9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~--------------~~~~----~~~~~~~~l~~aD~vi   67 (147)
T PF04016_consen    9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEE--------------PGDV----PDEDAEEILPWADVVI   67 (147)
T ss_dssp             TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SS--------------CT-E----EGGGHHHHGGG-SEEE
T ss_pred             cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCC--------------CCcC----CHHHHHHHHccCCEEE
Confidence            578999999951   237788888999999999876431000              0000    2356789999999999


Q ss_pred             EecCCCccccCcCC---HHHHhhhCCCCcEEEEcc
Q 024297          231 CCLSLNKQTVKLCS---SSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       231 ~~lp~t~~t~~li~---~~~l~~~mk~ga~lIN~~  262 (269)
                      ++-.      .++|   .+.++ ..++++.+|=+|
T Consensus        68 iTGs------TlvN~Ti~~iL~-~~~~~~~vil~G   95 (147)
T PF04016_consen   68 ITGS------TLVNGTIDDILE-LARNAREVILYG   95 (147)
T ss_dssp             EECH------HCCTTTHHHHHH-HTTTSSEEEEES
T ss_pred             EEee------eeecCCHHHHHH-hCccCCeEEEEe
Confidence            9853      2333   23677 777777776554

; PDB: 3L5O_B 3NPG_A.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.47  E-value=0.022  Score=51.46  Aligned_cols=87  Identities=11%  Similarity=-0.010  Sum_probs=53.5

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      .++++.|+|.|.+|..+++.++.+|++ |.+++++..+ ....                 ......+.-++.-...|+++
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~r-l~~a-----------------~~~~~i~~~~~~~~g~Dvvi  205 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRR-RDGA-----------------TGYEVLDPEKDPRRDYRAIY  205 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHH-HHhh-----------------hhccccChhhccCCCCCEEE
Confidence            467899999999999999999999997 5556554322 1100                 00000000001113578888


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      -+....    ..+ ...++ .++++..++.+|
T Consensus       206 d~~G~~----~~~-~~~~~-~l~~~G~iv~~G  231 (308)
T TIGR01202       206 DASGDP----SLI-DTLVR-RLAKGGEIVLAG  231 (308)
T ss_pred             ECCCCH----HHH-HHHHH-hhhcCcEEEEEe
Confidence            876521    122 33677 889999888776

>PRK08223 hypothetical protein; Validated

Probab=95.44  E-value=0.013  Score=52.89  Aligned_cols=102  Identities=17%  Similarity=0.108  Sum_probs=61.9

Q ss_pred             ccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhh------------------cccccc
Q 024297          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAV------------------KNGIID  207 (269)
Q Consensus       147 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~  207 (269)
                      ....|++++|.|+|+|.+|..+++.|...|. ++..+|...-.. .....+.-+..                  .+..--
T Consensus        21 ~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~-SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V   99 (287)
T PRK08223         21 EQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFEL-RNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEI   99 (287)
T ss_pred             HHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcch-hccccccCcChhHCCCcHHHHHHHHHHHHCCCCEE
Confidence            3467999999999999999999999999998 688888532211 10000000000                  000000


Q ss_pred             ccccccCCCCCHHHHHhhCCEEEEecCCC-ccccCcCCHHHHh
Q 024297          208 DLVDEKGCHEDIFEFASKADVVVCCLSLN-KQTVKLCSSSLSS  249 (269)
Q Consensus       208 ~~~~~~~~~~~l~ell~~aDvvv~~lp~t-~~t~~li~~~~l~  249 (269)
                      .......+.++++++++++|+|+-++..- -+++.+++..-..
T Consensus       100 ~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~  142 (287)
T PRK08223        100 RAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQ  142 (287)
T ss_pred             EEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence            00011113456889999999999777531 2677887775444

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.42  E-value=0.011  Score=58.11  Aligned_cols=81  Identities=11%  Similarity=0.235  Sum_probs=49.9

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHH-HHhhCCEEEEe
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE-FASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aDvvv~~  232 (269)
                      ..+.|+|+|++|+.+++.|+..|.+|+++|.++++.....+  .++.       ....+..+.+.+++ -++++|.++++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~--~g~~-------~i~GD~~~~~~L~~a~i~~a~~viv~  488 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE--RGIR-------AVLGNAANEEIMQLAHLDCARWLLLT  488 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--CCCe-------EEEcCCCCHHHHHhcCccccCEEEEE
Confidence            45679999999999999999999999999987654211110  0110       11111111112222 14689999999


Q ss_pred             cCCCccccCcC
Q 024297          233 LSLNKQTVKLC  243 (269)
Q Consensus       233 lp~t~~t~~li  243 (269)
                      .+...++..++
T Consensus       489 ~~~~~~~~~iv  499 (558)
T PRK10669        489 IPNGYEAGEIV  499 (558)
T ss_pred             cCChHHHHHHH
Confidence            88665544443

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=95.41  E-value=0.034  Score=51.43  Aligned_cols=97  Identities=16%  Similarity=0.174  Sum_probs=60.6

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      .|++|.|.|.|.+|+.+++.++.+|.+|++++.+..+.......       -| ++..+.. ...+.+.++....|+++-
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~-------~G-a~~vi~~-~~~~~~~~~~~~~D~vid  253 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINR-------LG-ADSFLVS-TDPEKMKAAIGTMDYIID  253 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHh-------CC-CcEEEcC-CCHHHHHhhcCCCCEEEE
Confidence            57899999999999999999999999998887655432111000       00 0011100 011234444445799998


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +... +.   .+ .+.++ .++++..++.+|.
T Consensus       254 ~~g~-~~---~~-~~~~~-~l~~~G~iv~vG~  279 (360)
T PLN02586        254 TVSA-VH---AL-GPLLG-LLKVNGKLITLGL  279 (360)
T ss_pred             CCCC-HH---HH-HHHHH-HhcCCcEEEEeCC
Confidence            7641 11   22 23677 8999999998874

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.39  E-value=0.046  Score=51.90  Aligned_cols=72  Identities=13%  Similarity=0.113  Sum_probs=53.7

Q ss_pred             cccccCCEEEEEec----------CchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhccccccccccccCCC
Q 024297          148 GETLLGKTVFILGF----------GNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH  216 (269)
Q Consensus       148 ~~~l~g~~vgIiG~----------G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (269)
                      +.++.+++|+|+|+          .+-+..+++.|+..| ++|.+||+......                 .........
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~-----------------~~~~~~~~~  377 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLP-----------------KKLDGLVTL  377 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchh-----------------hhccCceee
Confidence            46789999999997          668889999999996 99999998643210                 000000123


Q ss_pred             CCHHHHHhhCCEEEEecCCC
Q 024297          217 EDIFEFASKADVVVCCLSLN  236 (269)
Q Consensus       217 ~~l~ell~~aDvvv~~lp~t  236 (269)
                      .+++++++.||+|+++.+..
T Consensus       378 ~~~~~~~~~ad~vvi~t~~~  397 (415)
T PRK11064        378 VSLDEALATADVLVMLVDHS  397 (415)
T ss_pred             CCHHHHHhCCCEEEECCCCH
Confidence            67889999999999998744

>PRK13529 malate dehydrogenase; Provisional

Probab=95.38  E-value=0.51  Score=46.33  Aligned_cols=163  Identities=16%  Similarity=0.139  Sum_probs=100.6

Q ss_pred             CCCceEEEEccccCCc-cchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCcccccc
Q 024297           74 ANQMKLIMQFGVGLEG-VDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLL  152 (269)
Q Consensus        74 ~~~Lk~I~~~~aG~d~-id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~  152 (269)
                      .|+. +|+.=--+..+ +.+..-.+..|.+.|.-=      ..+|--+++.+|+.+|-                .++.+.
T Consensus       238 ~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDDi------QGTaaV~LAgll~A~r~----------------~g~~l~  294 (563)
T PRK13529        238 FPNA-LLQFEDFAQKNARRILERYRDEICTFNDDI------QGTGAVTLAGLLAALKI----------------TGEPLS  294 (563)
T ss_pred             CCCe-EEehhhcCCchHHHHHHHhccCCCeecccc------chHHHHHHHHHHHHHHH----------------hCCChh
Confidence            4554 55544333332 232222344677777532      44777899999999985                367899


Q ss_pred             CCEEEEEecCchHHHHHHHhcc----CCC-------EEEEEcCCCCCccc---cccccchhhhccccccccccccCCCCC
Q 024297          153 GKTVFILGFGNIGVELAKRLRP----FGV-------KIIATKRSWASHSQ---VSCQSSALAVKNGIIDDLVDEKGCHED  218 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~----~G~-------~V~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (269)
                      +.++.|+|.|+.|-.+|+.+..    .|.       +++.+|+..--...   .......|+-.+...... .......+
T Consensus       295 d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~-~~~~~~~~  373 (563)
T PRK13529        295 DQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADW-DTEGDVIS  373 (563)
T ss_pred             hcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhccccccc-ccccCCCC
Confidence            9999999999999999999886    587       79999976421110   001111111111000000 00012257


Q ss_pred             HHHHHhhC--CEEEEecCCCccccCcCCHHHHhhhCCC---CcEEEEccCCC
Q 024297          219 IFEFASKA--DVVVCCLSLNKQTVKLCSSSLSSKSMFF---ATYVVFMFQGH  265 (269)
Q Consensus       219 l~ell~~a--Dvvv~~lp~t~~t~~li~~~~l~~~mk~---ga~lIN~~RG~  265 (269)
                      |.++++.+  |+++-+-    ..-+.|+++.++ .|.+   ..++.=.|...
T Consensus       374 L~e~v~~~kPtvLIG~S----~~~g~Ft~evv~-~Ma~~~erPIIFaLSNPt  420 (563)
T PRK13529        374 LLEVVRNVKPTVLIGVS----GQPGAFTEEIVK-EMAAHCERPIIFPLSNPT  420 (563)
T ss_pred             HHHHHhccCCCEEEEec----CCCCCCCHHHHH-HHHhcCCCCEEEECCCcC
Confidence            99999988  9888763    224899999999 9887   67776666543

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=95.35  E-value=0.013  Score=53.08  Aligned_cols=32  Identities=25%  Similarity=0.350  Sum_probs=27.7

Q ss_pred             EEEEecCchHHHHHHHhccCCC-EEEEEcCCCC
Q 024297          156 VFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (269)
Q Consensus       156 vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~  187 (269)
                      |+|||.|.+|..+|..+...|. +|+.+|++.+
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~   33 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG   33 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence            6899999999999998886554 9999998754

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.34  E-value=0.0081  Score=46.01  Aligned_cols=33  Identities=33%  Similarity=0.671  Sum_probs=28.2

Q ss_pred             EEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       156 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      |.|+|+|.+|+.+++.|+..+.+|++++.++..
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~   33 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPER   33 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHH
Confidence            579999999999999999977799999987644

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>CHL00194 ycf39 Ycf39; Provisional

Probab=95.33  E-value=0.028  Score=50.94  Aligned_cols=72  Identities=11%  Similarity=0.188  Sum_probs=48.2

Q ss_pred             CEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      ++|.|.| .|.+|+.+++.|...|++|.+..|+..+.....        ..+ +.-...+.....++.+++..+|+|+.+
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~--------~~~-v~~v~~Dl~d~~~l~~al~g~d~Vi~~   71 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLK--------EWG-AELVYGDLSLPETLPPSFKGVTAIIDA   71 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHh--------hcC-CEEEECCCCCHHHHHHHHCCCCEEEEC
Confidence            3789999 699999999999999999999998754311000        000 011111122345688889999998876


Q ss_pred             cC
Q 024297          233 LS  234 (269)
Q Consensus       233 lp  234 (269)
                      .+
T Consensus        72 ~~   73 (317)
T CHL00194         72 ST   73 (317)
T ss_pred             CC
Confidence            54

>PLN00106 malate dehydrogenase

Probab=95.33  E-value=0.055  Score=49.68  Aligned_cols=76  Identities=16%  Similarity=0.054  Sum_probs=47.8

Q ss_pred             cCCEEEEEec-CchHHHHHHHhccCC--CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          152 LGKTVFILGF-GNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       152 ~g~~vgIiG~-G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      ..+||+|+|. |++|..+|..|...+  -++..+|++... ....+.      .+.............+++.+.++.||+
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~-g~a~Dl------~~~~~~~~i~~~~~~~d~~~~l~~aDi   89 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTP-GVAADV------SHINTPAQVRGFLGDDQLGDALKGADL   89 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCC-eeEchh------hhCCcCceEEEEeCCCCHHHHcCCCCE
Confidence            4469999999 999999999988544  489999986621 111110      000000011111123567889999999


Q ss_pred             EEEecC
Q 024297          229 VVCCLS  234 (269)
Q Consensus       229 vv~~lp  234 (269)
                      |+.+.-
T Consensus        90 VVitAG   95 (323)
T PLN00106         90 VIIPAG   95 (323)
T ss_pred             EEEeCC
Confidence            999854

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=95.31  E-value=0.041  Score=48.84  Aligned_cols=70  Identities=14%  Similarity=0.054  Sum_probs=48.2

Q ss_pred             EEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH------hh-C
Q 024297          155 TVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA------SK-A  226 (269)
Q Consensus       155 ~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~-a  226 (269)
                      +|.|+|. |.+|+.+++.|...|.+|.+..|++++....           + +.....+..+.+++.+++      .. +
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~-----------~-~~~~~~d~~d~~~l~~a~~~~~~~~g~~   68 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGP-----------N-EKHVKFDWLDEDTWDNPFSSDDGMEPEI   68 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCC-----------C-CccccccCCCHHHHHHHHhcccCcCCce
Confidence            4778886 9999999999999999999999987542110           0 011111222445677777      44 8


Q ss_pred             CEEEEecCCC
Q 024297          227 DVVVCCLSLN  236 (269)
Q Consensus       227 Dvvv~~lp~t  236 (269)
                      |.|+++.|..
T Consensus        69 d~v~~~~~~~   78 (285)
T TIGR03649        69 SAVYLVAPPI   78 (285)
T ss_pred             eEEEEeCCCC
Confidence            9999887754

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK11579 putative oxidoreductase; Provisional

Probab=95.28  E-value=0.031  Score=51.52  Aligned_cols=65  Identities=12%  Similarity=0.076  Sum_probs=42.2

Q ss_pred             CEEEEEecCchHHH-HHHHhcc-CCCEEEE-EcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh--hCCE
Q 024297          154 KTVFILGFGNIGVE-LAKRLRP-FGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV  228 (269)
Q Consensus       154 ~~vgIiG~G~iG~~-~a~~l~~-~G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDv  228 (269)
                      -+|||||+|.||+. .+..++. -+++|.+ +|++..+. .                ........+.+++++++  +.|+
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~-~----------------~~~~~~~~~~~~~ell~~~~vD~   67 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKV-K----------------ADWPTVTVVSEPQHLFNDPNIDL   67 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHH-H----------------hhCCCCceeCCHHHHhcCCCCCE
Confidence            48999999999984 5665554 4788775 45443220 0                00000113478999996  5799


Q ss_pred             EEEecCC
Q 024297          229 VVCCLSL  235 (269)
Q Consensus       229 vv~~lp~  235 (269)
                      |+++.|.
T Consensus        68 V~I~tp~   74 (346)
T PRK11579         68 IVIPTPN   74 (346)
T ss_pred             EEEcCCc
Confidence            9999884

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.27  E-value=0.068  Score=46.10  Aligned_cols=98  Identities=24%  Similarity=0.246  Sum_probs=61.2

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH-----Hhh
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-----ASK  225 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-----l~~  225 (269)
                      ..|++|.|+|.|.+|+.+++.++..|.+|++++++..+.....        ..| .......  ...+..+.     -..
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~--------~~g-~~~~~~~--~~~~~~~~~~~~~~~~  201 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAK--------ELG-ADHVIDY--KEEDLEEELRLTGGGG  201 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH--------HhC-CceeccC--CcCCHHHHHHHhcCCC
Confidence            4678999999999999999999999999999987653311100        000 0011110  01112221     246


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      .|+++.+++..     -.-...++ .|+++..+++++...
T Consensus       202 ~d~vi~~~~~~-----~~~~~~~~-~l~~~G~~v~~~~~~  235 (271)
T cd05188         202 ADVVIDAVGGP-----ETLAQALR-LLRPGGRIVVVGGTS  235 (271)
T ss_pred             CCEEEECCCCH-----HHHHHHHH-hcccCCEEEEEccCC
Confidence            89999887632     11234567 899999999887543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=95.24  E-value=0.022  Score=54.17  Aligned_cols=78  Identities=15%  Similarity=0.036  Sum_probs=46.4

Q ss_pred             CEEEEEecCchHHHHHH---Hh---ccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          154 KTVFILGFGNIGVELAK---RL---RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~---~l---~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      .+|+|||.|++|...+-   .+   ...|.+|..+|++.......... .....+...   .........++.+.++.||
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~-~~~~~~~~~---~~~~I~~ttD~~eal~~AD   76 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEIL-AKKIVEELG---APLKIEATTDRREALDGAD   76 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcC---CCeEEEEeCCHHHHhcCCC
Confidence            37999999999998554   32   34478999999876542111000 000000000   0001112367899999999


Q ss_pred             EEEEecCC
Q 024297          228 VVVCCLSL  235 (269)
Q Consensus       228 vvv~~lp~  235 (269)
                      +|+.+.|.
T Consensus        77 ~Vi~ai~~   84 (423)
T cd05297          77 FVINTIQV   84 (423)
T ss_pred             EEEEeeEe
Confidence            99999983

linked to 3D####ucture

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.23  E-value=0.015  Score=60.90  Aligned_cols=77  Identities=18%  Similarity=0.285  Sum_probs=47.6

Q ss_pred             cCCEEEEEecCchHHHHHHHhccC-CCE-------------EEEEcCCCCCccccccccchhhhccccccccccccCCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPF-GVK-------------IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE  217 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~-G~~-------------V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (269)
                      ..|+|+|||.|.||+.+|+.|... +.+             |.+.|++..........     ++ + +....-.....+
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~-----~~-~-~~~v~lDv~D~e  640 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEG-----IE-N-AEAVQLDVSDSE  640 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHh-----cC-C-CceEEeecCCHH
Confidence            477999999999999999999754 334             88888776442111000     00 0 000000111234


Q ss_pred             CHHHHHhhCCEEEEecCC
Q 024297          218 DIFEFASKADVVVCCLSL  235 (269)
Q Consensus       218 ~l~ell~~aDvvv~~lp~  235 (269)
                      ++.++++++|+|++++|.
T Consensus       641 ~L~~~v~~~DaVIsalP~  658 (1042)
T PLN02819        641 SLLKYVSQVDVVISLLPA  658 (1042)
T ss_pred             HHHHhhcCCCEEEECCCc
Confidence            566666789999999995

>PRK07806 short chain dehydrogenase; Provisional

Probab=95.23  E-value=0.063  Score=46.30  Aligned_cols=37  Identities=32%  Similarity=0.445  Sum_probs=33.0

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      .+.++++.|.|. |.||+.+++.|...|++|+++.|+.
T Consensus         3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~   40 (248)
T PRK07806          3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK   40 (248)
T ss_pred             CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence            367899999996 9999999999999999999988764

>PRK06128 oxidoreductase; Provisional

Probab=95.19  E-value=0.058  Score=48.45  Aligned_cols=37  Identities=24%  Similarity=0.241  Sum_probs=32.2

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      .+.||++.|.|. |.||+++|+.|...|++|++..+..
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~   89 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPE   89 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCc
Confidence            478999999995 8999999999999999998876543

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.16  E-value=0.015  Score=57.95  Aligned_cols=96  Identities=20%  Similarity=0.211  Sum_probs=56.9

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHH-HHHhhCCEEEE
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF-EFASKADVVVC  231 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-ell~~aDvvv~  231 (269)
                      ..+|.|+|+|++|+.+++.|...|.+++++|.+++.-.....  .++.+-.|+       ..+.+-|+ .=++++|.+++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--~g~~v~~GD-------at~~~~L~~agi~~A~~vvv  470 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK--FGMKVFYGD-------ATRMDLLESAGAAKAEVLIN  470 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--cCCeEEEEe-------CCCHHHHHhcCCCcCCEEEE
Confidence            467889999999999999999999999999987654211110  011111111       11111222 12458999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEE
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVF  260 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN  260 (269)
                      +.+..+.+..++  ...+ .+.|+..++-
T Consensus       471 ~~~d~~~n~~i~--~~ar-~~~p~~~iia  496 (621)
T PRK03562        471 AIDDPQTSLQLV--ELVK-EHFPHLQIIA  496 (621)
T ss_pred             EeCCHHHHHHHH--HHHH-HhCCCCeEEE
Confidence            987555443332  2333 4555554443

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=95.13  E-value=0.017  Score=49.70  Aligned_cols=74  Identities=16%  Similarity=0.161  Sum_probs=50.1

Q ss_pred             EEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecC
Q 024297          156 VFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS  234 (269)
Q Consensus       156 vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp  234 (269)
                      |.|+|. |.+|+.+++.|..-|++|.+..|+..+.....       +.+-++.-...++.+.++|.++++.+|.|+++.|
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~-------l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~   73 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQ-------LQALGAEVVEADYDDPESLVAALKGVDAVFSVTP   73 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHH-------HHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESS
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhh-------hhcccceEeecccCCHHHHHHHHcCCceEEeecC
Confidence            678995 99999999999999999999998764311100       0100111111222245678899999999999998


Q ss_pred             CC
Q 024297          235 LN  236 (269)
Q Consensus       235 ~t  236 (269)
                      ..
T Consensus        74 ~~   75 (233)
T PF05368_consen   74 PS   75 (233)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.08  E-value=0.017  Score=49.19  Aligned_cols=43  Identities=21%  Similarity=0.440  Sum_probs=38.1

Q ss_pred             CCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCC
Q 024297          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (269)
Q Consensus       143 w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  185 (269)
                      |.......|.+++|.|+|.|.+|.++++.|...|. +++.+|..
T Consensus        11 ~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          11 WGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             hCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            66555678999999999999999999999999999 59999864

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.03  E-value=0.052  Score=52.12  Aligned_cols=34  Identities=15%  Similarity=0.326  Sum_probs=30.7

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  185 (269)
                      -.|++|+|+|+|.-|+++++.|+. |++|+++|..
T Consensus         4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~   37 (454)
T PRK01368          4 HTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL   37 (454)
T ss_pred             CCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence            357899999999999999999995 9999999954

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=95.02  E-value=0.075  Score=48.27  Aligned_cols=88  Identities=19%  Similarity=0.104  Sum_probs=53.7

Q ss_pred             CCEEEEEecCchHHHHHHHhcc-CCCEEEE-EcCCCCCccccccccchhhhccccccccccccC---CCCCHHHHHh---
Q 024297          153 GKTVFILGFGNIGVELAKRLRP-FGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS---  224 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~-~G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~---  224 (269)
                      ..++||||.|+||+..+..+.. -++++.+ +++++.+...                ....+++   .+.++++++.   
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gl----------------a~A~~~Gi~~~~~~ie~LL~~~~   67 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGL----------------ARARRLGVATSAEGIDGLLAMPE   67 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHH----------------HHHHHcCCCcccCCHHHHHhCcC
Confidence            4689999999999997766664 4677664 4444332100                0112222   2367888885   


Q ss_pred             --hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          225 --KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       225 --~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                        +.|+|+.+.|..   .|   .+...+..+.|..+|+-.
T Consensus        68 ~~dIDiVf~AT~a~---~H---~e~a~~a~eaGk~VID~s  101 (302)
T PRK08300         68 FDDIDIVFDATSAG---AH---VRHAAKLREAGIRAIDLT  101 (302)
T ss_pred             CCCCCEEEECCCHH---HH---HHHHHHHHHcCCeEEECC
Confidence              578899997632   12   333332567788777765

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.01  E-value=0.012  Score=47.46  Aligned_cols=75  Identities=21%  Similarity=0.178  Sum_probs=45.0

Q ss_pred             CEEEEEec-CchHHHHHHHhcc--CCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          154 KTVFILGF-GNIGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~--~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      .+|+|||. |.+|+.+|..|..  ++-++..+|++..........-++...+..      ....-.....+.+++||+|+
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~------~~~~i~~~~~~~~~~aDivv   74 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLP------SPVRITSGDYEALKDADIVV   74 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGST------EEEEEEESSGGGGTTESEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcc------cccccccccccccccccEEE
Confidence            38999999 9999999998884  556899999874431110000000000000      00001124556789999999


Q ss_pred             EecC
Q 024297          231 CCLS  234 (269)
Q Consensus       231 ~~lp  234 (269)
                      ++.-
T Consensus        75 itag   78 (141)
T PF00056_consen   75 ITAG   78 (141)
T ss_dssp             ETTS
T ss_pred             Eecc
Confidence            9974

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=95.01  E-value=0.09  Score=47.94  Aligned_cols=76  Identities=20%  Similarity=0.250  Sum_probs=52.7

Q ss_pred             EEEEEe-cCchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          155 TVFILG-FGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       155 ~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      +|+|+| -|-+|.++.++|... .+++.........                          ...+.+++++++|+++++
T Consensus         3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~--------------------------~~~~~~~~~~~~D~vFla   56 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK--------------------------DAAERAKLLNAADVAILC   56 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc--------------------------CcCCHhHhhcCCCEEEEC
Confidence            799999 799999999999987 5576666422110                          112455777899999999


Q ss_pred             cCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          233 LSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       233 lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +|.. .     ..+...+..+.|+.+|+.+
T Consensus        57 lp~~-~-----s~~~~~~~~~~g~~VIDlS   80 (310)
T TIGR01851        57 LPDD-A-----AREAVSLVDNPNTCIIDAS   80 (310)
T ss_pred             CCHH-H-----HHHHHHHHHhCCCEEEECC
Confidence            9843 2     3344441335788999887

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>cd08293 PTGR2 Prostaglandin reductase

Probab=94.99  E-value=0.059  Score=48.95  Aligned_cols=93  Identities=15%  Similarity=0.146  Sum_probs=58.3

Q ss_pred             CCEEEEEec-CchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----h
Q 024297          153 GKTVFILGF-GNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  225 (269)
Q Consensus       153 g~~vgIiG~-G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  225 (269)
                      |.+|.|.|. |.+|+.+++.++.+|+ +|++++++.++.......       -| ++..+..  ...++.+.+.     .
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~-------lG-a~~vi~~--~~~~~~~~i~~~~~~g  224 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE-------LG-FDAAINY--KTDNVAERLRELCPEG  224 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh-------cC-CcEEEEC--CCCCHHHHHHHHCCCC
Confidence            489999998 9999999999999999 899988765432110000       00 0111110  1123333222     4


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      .|+++-++...    . + .+.++ .++++..+|.+|
T Consensus       225 vd~vid~~g~~----~-~-~~~~~-~l~~~G~iv~~G  254 (345)
T cd08293         225 VDVYFDNVGGE----I-S-DTVIS-QMNENSHIILCG  254 (345)
T ss_pred             ceEEEECCCcH----H-H-HHHHH-HhccCCEEEEEe
Confidence            78888876521    1 2 55678 899999888876

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=94.99  E-value=0.036  Score=50.63  Aligned_cols=91  Identities=13%  Similarity=0.024  Sum_probs=56.7

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      .|.+|.|.|.|.+|+.+++.++.+|++|++++++..+.....+        -| .+...    ...+  ..-...|+++.
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~--------~G-a~~vi----~~~~--~~~~~~d~~i~  229 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA--------LG-AASAG----GAYD--TPPEPLDAAIL  229 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH--------hC-Cceec----cccc--cCcccceEEEE
Confidence            5789999999999999999999999999999877554211100        00 00000    0000  00124677666


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +... +   ..+ ...++ .++++..++.+|-
T Consensus       230 ~~~~-~---~~~-~~~~~-~l~~~G~~v~~G~  255 (329)
T TIGR02822       230 FAPA-G---GLV-PPALE-ALDRGGVLAVAGI  255 (329)
T ss_pred             CCCc-H---HHH-HHHHH-hhCCCcEEEEEec
Confidence            6542 1   122 34677 8999998888774

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=94.98  E-value=0.36  Score=43.71  Aligned_cols=140  Identities=16%  Similarity=0.117  Sum_probs=88.7

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEe-cCchHHHHHHHh
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILG-FGNIGVELAKRL  172 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG-~G~iG~~~a~~l  172 (269)
                      .++..+|+|.|.=..   .-.++  .+|+-++.+..+.                |+ +.|+|+..+| ..+++..+....
T Consensus       116 lA~~s~VPViNgLtD---~~HP~--Q~LADl~Ti~E~~----------------g~-l~g~k~a~vGDgNNv~nSl~~~~  173 (310)
T COG0078         116 LAKYSGVPVINGLTD---EFHPC--QALADLMTIKEHF----------------GS-LKGLKLAYVGDGNNVANSLLLAA  173 (310)
T ss_pred             HHHhCCCceEccccc---ccCcH--HHHHHHHHHHHhc----------------Cc-ccCcEEEEEcCcchHHHHHHHHH
Confidence            356678999996443   22455  4445555554442                23 9999999999 557999999999


Q ss_pred             ccCCCEEEEEcCCCCCccccccccc-hhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCC--cccc---------
Q 024297          173 RPFGVKIIATKRSWASHSQVSCQSS-ALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLN--KQTV---------  240 (269)
Q Consensus       173 ~~~G~~V~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t--~~t~---------  240 (269)
                      ..+||+|....+..-...+...... ..+-.+|      .+..-..+..+.++.||||..-+...  ++..         
T Consensus       174 a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g------~~i~~t~d~~eAv~gADvvyTDvWvSMGee~e~~~~~~~~~  247 (310)
T COG0078         174 AKLGMDVRIATPKGYEPDPEVVEKAKENAKESG------GKITLTEDPEEAVKGADVVYTDVWVSMGEEAEAEERRIAFL  247 (310)
T ss_pred             HHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcC------CeEEEecCHHHHhCCCCEEEecCcccCcchhhhHHHHHhhC
Confidence            9999999999876543211110000 0000011      01112368999999999998875432  1221         


Q ss_pred             --CcCCHHHHhhhCCCCcEEEEcc
Q 024297          241 --KLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       241 --~li~~~~l~~~mk~ga~lIN~~  262 (269)
                        .-+|.+.++ .-+++++|.-+=
T Consensus       248 ~~yQVn~~lm~-~a~~~~ifmHCL  270 (310)
T COG0078         248 PPYQVNEELMA-LAGPDAIFMHCL  270 (310)
T ss_pred             CCceeCHHHHh-hcCCCeEEEeCC
Confidence              567888888 888899888763

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=94.96  E-value=0.12  Score=47.05  Aligned_cols=33  Identities=30%  Similarity=0.279  Sum_probs=28.7

Q ss_pred             CEEEEEec-CchHHHHHHHhccCCC--EEEEEcCCC
Q 024297          154 KTVFILGF-GNIGVELAKRLRPFGV--KIIATKRSW  186 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~  186 (269)
                      ++|+|+|. |.+|..++..+...|.  +|+.+|+..
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~   36 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPK   36 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcc
Confidence            48999998 9999999999988775  599999854

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.91  E-value=0.019  Score=54.52  Aligned_cols=38  Identities=37%  Similarity=0.335  Sum_probs=34.1

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      +..+++.|+|+|.+|+.+++.|...|.+|++++.+++.
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~  266 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPER  266 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence            45789999999999999999999999999999987653

>PTZ00325 malate dehydrogenase; Provisional

Probab=94.90  E-value=0.096  Score=48.07  Aligned_cols=79  Identities=20%  Similarity=0.085  Sum_probs=47.8

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhcc--CCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~--~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      -++.++|+|+|. |+||..+|..+..  ...++..+|+.... ....+.    .  +..............+..+.++.|
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~-g~a~Dl----~--~~~~~~~v~~~td~~~~~~~l~ga   77 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAP-GVAADL----S--HIDTPAKVTGYADGELWEKALRGA   77 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCc-ccccch----h--hcCcCceEEEecCCCchHHHhCCC
Confidence            356779999999 9999999999884  45689999983221 111110    0  000000011111113346889999


Q ss_pred             CEEEEecCC
Q 024297          227 DVVVCCLSL  235 (269)
Q Consensus       227 Dvvv~~lp~  235 (269)
                      |+|++++-.
T Consensus        78 DvVVitaG~   86 (321)
T PTZ00325         78 DLVLICAGV   86 (321)
T ss_pred             CEEEECCCC
Confidence            999988653

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.90  E-value=0.036  Score=52.73  Aligned_cols=36  Identities=25%  Similarity=0.386  Sum_probs=33.6

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      +.|+++.|+|.|.+|.++|+.|...|++|+++|++.
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            578999999999999999999999999999999754

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=94.89  E-value=0.061  Score=49.81  Aligned_cols=94  Identities=13%  Similarity=0.084  Sum_probs=57.5

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCC----HHHHHh-h
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED----IFEFAS-K  225 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~ell~-~  225 (269)
                      .|.+|.|+|.|.+|+.+++.++..|+ +|++++++..+......        -| ++..+..  ...+    +.++.. .
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~--------~G-a~~~i~~--~~~~~~~~i~~~~~~g  259 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE--------LG-ATATVNA--GDPNAVEQVRELTGGG  259 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH--------cC-CceEeCC--CchhHHHHHHHHhCCC
Confidence            57899999999999999999999999 69998876544211100        00 0001110  0112    222222 3


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      .|+++-+.... .   .+ ...++ .++++..++.++
T Consensus       260 ~d~vid~~G~~-~---~~-~~~~~-~l~~~G~iv~~G  290 (371)
T cd08281         260 VDYAFEMAGSV-P---AL-ETAYE-ITRRGGTTVTAG  290 (371)
T ss_pred             CCEEEECCCCh-H---HH-HHHHH-HHhcCCEEEEEc
Confidence            79888876421 1   12 23567 788888888876

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.86  E-value=0.041  Score=39.43  Aligned_cols=34  Identities=35%  Similarity=0.494  Sum_probs=31.0

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      +|.|||.|.+|-++|..|..+|.+|+.+.+....
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence            5889999999999999999999999999987644

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=94.81  E-value=0.035  Score=54.60  Aligned_cols=85  Identities=18%  Similarity=0.252  Sum_probs=51.3

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhh------hccccccccccccCCCCCHHHHH
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALA------VKNGIIDDLVDEKGCHEDIFEFA  223 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~ell  223 (269)
                      -.|++|.|.|. |.||+.+++.|...|++|+++.|+..+............      ...+.+.-...+....+++.+++
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL  157 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL  157 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence            46789999995 999999999999999999999987654211000000000      00000000111122334567778


Q ss_pred             hhCCEEEEecCC
Q 024297          224 SKADVVVCCLSL  235 (269)
Q Consensus       224 ~~aDvvv~~lp~  235 (269)
                      ..+|+||.+...
T Consensus       158 ggiDiVVn~AG~  169 (576)
T PLN03209        158 GNASVVICCIGA  169 (576)
T ss_pred             cCCCEEEEcccc
Confidence            899999988653

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=94.81  E-value=0.042  Score=48.00  Aligned_cols=40  Identities=30%  Similarity=0.421  Sum_probs=34.4

Q ss_pred             ccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       149 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ....+++|.|+| .|.||+.+++.|...|++|+++.|+..+
T Consensus        13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~   53 (251)
T PLN00141         13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDK   53 (251)
T ss_pred             ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence            456688999999 5999999999999999999998887543

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=94.78  E-value=0.12  Score=49.69  Aligned_cols=88  Identities=18%  Similarity=0.199  Sum_probs=57.9

Q ss_pred             ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccc-------------ccc
Q 024297          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-------------DEK  213 (269)
Q Consensus       147 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~  213 (269)
                      ......+++|+|||.|.-|.+.|..|...|..|++|.+....--....-..+|..+.++++...             ...
T Consensus       117 ~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~v  196 (457)
T COG0493         117 LPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRV  196 (457)
T ss_pred             CCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceE
Confidence            3456788999999999999999999999999999999866542211111122222222211111             011


Q ss_pred             CCCCCHHHHHhhCCEEEEecC
Q 024297          214 GCHEDIFEFASKADVVVCCLS  234 (269)
Q Consensus       214 ~~~~~l~ell~~aDvvv~~lp  234 (269)
                      +...++++++++.|.|+++..
T Consensus       197 G~~it~~~L~~e~Dav~l~~G  217 (457)
T COG0493         197 GRDITLEELLKEYDAVFLATG  217 (457)
T ss_pred             CCcCCHHHHHHhhCEEEEecc
Confidence            224578888888899988854

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=94.76  E-value=0.061  Score=48.61  Aligned_cols=96  Identities=15%  Similarity=0.076  Sum_probs=59.8

Q ss_pred             ccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----
Q 024297          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----  224 (269)
Q Consensus       151 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----  224 (269)
                      -.|.+|.|.| .|.+|+.+++.++.+|++|++.+++.++.....        .-| ++..+.. ....++.+.+.     
T Consensus       137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~--------~lG-a~~vi~~-~~~~~~~~~~~~~~~~  206 (325)
T TIGR02825       137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLK--------KLG-FDVAFNY-KTVKSLEETLKKASPD  206 (325)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--------HcC-CCEEEec-cccccHHHHHHHhCCC
Confidence            3578999999 599999999999999999999887654321110        001 0111110 01123333322     


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ..|+++-++. .   .. + ...++ .++++..+|++|.
T Consensus       207 gvdvv~d~~G-~---~~-~-~~~~~-~l~~~G~iv~~G~  238 (325)
T TIGR02825       207 GYDCYFDNVG-G---EF-S-NTVIG-QMKKFGRIAICGA  238 (325)
T ss_pred             CeEEEEECCC-H---HH-H-HHHHH-HhCcCcEEEEecc
Confidence            3688887764 1   12 2 45778 8999999998875

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=94.74  E-value=0.091  Score=48.03  Aligned_cols=77  Identities=23%  Similarity=0.271  Sum_probs=52.5

Q ss_pred             CEEEEEe-cCchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILG-FGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      .+|+|+| .|-+|+++.++|.... .++.....+...                   ..       ...++.+.++|+|++
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-------------------~~-------~~~~~~~~~~DvvFl   56 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-------------------DA-------AARRELLNAADVAIL   56 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-------------------cc-------cCchhhhcCCCEEEE
Confidence            4899999 8999999999999874 466666433211                   01       223355678999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ++|..      +..+...+..+.|+.+|+.+
T Consensus        57 alp~~------~s~~~~~~~~~~g~~VIDlS   81 (313)
T PRK11863         57 CLPDD------AAREAVALIDNPATRVIDAS   81 (313)
T ss_pred             CCCHH------HHHHHHHHHHhCCCEEEECC
Confidence            99833      33444441336788999887

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=94.73  E-value=0.061  Score=48.88  Aligned_cols=97  Identities=20%  Similarity=0.197  Sum_probs=58.7

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCCCccccccccchhhhccccccccccccCC-CCCHHHHHh--hCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC-HEDIFEFAS--KAD  227 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~--~aD  227 (269)
                      .|.+|.|+|.|.+|+.+++.++.+|++ |++.+++..+......        -| +......... ...+.++..  ..|
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~--------~g-a~~~i~~~~~~~~~~~~~~~~~~~d  233 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA--------LG-ADFVINSGQDDVQEIRELTSGAGAD  233 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH--------hC-CCEEEcCCcchHHHHHHHhCCCCCC
Confidence            488999999999999999999999998 9998876544211000        00 0011110000 011223333  478


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +++-+....    ..+ ...++ .++++..++.+|-
T Consensus       234 ~vid~~g~~----~~~-~~~~~-~l~~~G~~v~~g~  263 (339)
T cd08239         234 VAIECSGNT----AAR-RLALE-AVRPWGRLVLVGE  263 (339)
T ss_pred             EEEECCCCH----HHH-HHHHH-HhhcCCEEEEEcC
Confidence            888876521    111 33567 8888888887764

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=94.67  E-value=0.045  Score=49.87  Aligned_cols=98  Identities=22%  Similarity=0.181  Sum_probs=56.4

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l  233 (269)
                      .+|.|+|.|.||.-++.+|...|..|+...|...-  ..... -++.+....  ...........-.+.+..+|+|++++
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~--~~l~~-~GL~i~~~~--~~~~~~~~~~~~~~~~~~~Dlviv~v   75 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRL--EALKK-KGLRIEDEG--GNFTTPVVAATDAEALGPADLVIVTV   75 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHH--HHHHh-CCeEEecCC--CccccccccccChhhcCCCCEEEEEe
Confidence            48999999999999999999999889998886531  11100 011111100  00000011223345667999999998


Q ss_pred             CCCccccCcCCHHHHhhhCCCCcEEE
Q 024297          234 SLNKQTVKLCSSSLSSKSMFFATYVV  259 (269)
Q Consensus       234 p~t~~t~~li~~~~l~~~mk~ga~lI  259 (269)
                      -.. +|...+.. ... ..++.+.++
T Consensus        76 Ka~-q~~~al~~-l~~-~~~~~t~vl   98 (307)
T COG1893          76 KAY-QLEEALPS-LAP-LLGPNTVVL   98 (307)
T ss_pred             ccc-cHHHHHHH-hhh-cCCCCcEEE
Confidence            633 33333322 333 566666555

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=94.66  E-value=0.054  Score=49.77  Aligned_cols=30  Identities=33%  Similarity=0.588  Sum_probs=25.3

Q ss_pred             EEEEEecCchHHHHHHHhccC----CCEEEEEcC
Q 024297          155 TVFILGFGNIGVELAKRLRPF----GVKIIATKR  184 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~----G~~V~~~~~  184 (269)
                      +|||.|||.||+.+.+.+...    +++|..++.
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd   34 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE   34 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence            589999999999999998765    378888764

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=94.61  E-value=0.092  Score=48.33  Aligned_cols=95  Identities=21%  Similarity=0.183  Sum_probs=58.7

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCCCccccccccchhhhccccccccccccCCCCC----HHHHHh--
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED----IFEFAS--  224 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~ell~--  224 (269)
                      .|++|.|+|.|.+|+.+++.++.+|++ |++++++..+.....        .-| ++..+..  ...+    +.++..  
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~--------~~G-a~~~i~~--~~~~~~~~i~~~~~~~  244 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR--------EFG-ATHTVNS--SGTDPVEAIRALTGGF  244 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH--------HcC-CceEEcC--CCcCHHHHHHHHhCCC
Confidence            578999999999999999999999995 999887654421110        001 0111110  1112    223332  


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ..|+|+-+... +.   .+ .+.+. .++++..+|.+|-
T Consensus       245 g~d~vid~~g~-~~---~~-~~~~~-~~~~~G~iv~~G~  277 (358)
T TIGR03451       245 GADVVIDAVGR-PE---TY-KQAFY-ARDLAGTVVLVGV  277 (358)
T ss_pred             CCCEEEECCCC-HH---HH-HHHHH-HhccCCEEEEECC
Confidence            47988887642 21   22 23566 7899998888874

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.61  E-value=0.029  Score=44.50  Aligned_cols=35  Identities=40%  Similarity=0.560  Sum_probs=30.6

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~  186 (269)
                      +.++|.|+|.|.+|..+|+.|...|+ +++.+|...
T Consensus         1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            36799999999999999999999999 799999643

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK06523 short chain dehydrogenase; Provisional

Probab=94.60  E-value=0.066  Score=46.59  Aligned_cols=40  Identities=30%  Similarity=0.429  Sum_probs=35.2

Q ss_pred             ccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       149 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ..+.|+++.|.|. |.||+++++.|...|++|++.+|+...
T Consensus         5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~   45 (260)
T PRK06523          5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPD   45 (260)
T ss_pred             cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhh
Confidence            4588999999994 899999999999999999999987543

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=94.55  E-value=0.041  Score=42.76  Aligned_cols=84  Identities=13%  Similarity=0.246  Sum_probs=51.3

Q ss_pred             CEEEEEe----cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          154 KTVFILG----FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       154 ~~vgIiG----~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      |+|+|||    -++.|..+.+.|+..|++|+.+++....-                  ....   .+.++.+.-...|++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i------------------~G~~---~y~sl~e~p~~iDla   59 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI------------------LGIK---CYPSLAEIPEPIDLA   59 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE------------------TTEE----BSSGGGCSST-SEE
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE------------------CcEE---eeccccCCCCCCCEE
Confidence            6899999    78999999999999999999998765330                  1111   346677634789999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ++++|. +.+..++.+ ..  .+..+.+++..+
T Consensus        60 vv~~~~-~~~~~~v~~-~~--~~g~~~v~~~~g   88 (116)
T PF13380_consen   60 VVCVPP-DKVPEIVDE-AA--ALGVKAVWLQPG   88 (116)
T ss_dssp             EE-S-H-HHHHHHHHH-HH--HHT-SEEEE-TT
T ss_pred             EEEcCH-HHHHHHHHH-HH--HcCCCEEEEEcc
Confidence            999983 334444333 22  234455555544

>PRK12742 oxidoreductase; Provisional

Probab=94.55  E-value=0.12  Score=44.23  Aligned_cols=35  Identities=29%  Similarity=0.447  Sum_probs=31.1

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKR  184 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~  184 (269)
                      .+.+|++.|.|. |.||+++|+.|...|++|+...+
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~   38 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYA   38 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence            467899999995 89999999999999999988755

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=94.55  E-value=0.067  Score=47.97  Aligned_cols=72  Identities=10%  Similarity=0.075  Sum_probs=47.9

Q ss_pred             CEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      ++|.|.|. |-||+.+++.|...|.+|++++|+..+... ..        ...+.-...+.....++.++++.+|+|+.+
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~--------~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~   71 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRN-LE--------GLDVEIVEGDLRDPASLRKAVAGCRALFHV   71 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccc-cc--------cCCceEEEeeCCCHHHHHHHHhCCCEEEEe
Confidence            47889985 999999999999999999999987543110 00        000011111122334677888899998877


Q ss_pred             cC
Q 024297          233 LS  234 (269)
Q Consensus       233 lp  234 (269)
                      .+
T Consensus        72 a~   73 (328)
T TIGR03466        72 AA   73 (328)
T ss_pred             ce
Confidence            64

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=94.54  E-value=0.059  Score=50.09  Aligned_cols=34  Identities=35%  Similarity=0.586  Sum_probs=31.1

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      +|+|||.|..|+.+++.++.+|++|++++.++..
T Consensus         1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~   34 (380)
T TIGR01142         1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANA   34 (380)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            5899999999999999999999999999987543

This enzyme is an alternative to PurN (TIGR00639)

>PRK08265 short chain dehydrogenase; Provisional

Probab=94.53  E-value=0.074  Score=46.58  Aligned_cols=38  Identities=24%  Similarity=0.302  Sum_probs=34.3

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      .+.++++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD   41 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478899999995 99999999999999999999998754

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=94.49  E-value=0.066  Score=49.35  Aligned_cols=90  Identities=17%  Similarity=0.111  Sum_probs=53.5

Q ss_pred             CCEEEEEe-cCchHHHHHHHhccCCC---EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          153 GKTVFILG-FGNIGVELAKRLRPFGV---KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       153 g~~vgIiG-~G~iG~~~a~~l~~~G~---~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      +.+|+|+| .|.+|++++++|...|+   ++.+..+..... +...      + +|  .+..  .... +. ..+..+|+
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g-~~l~------~-~g--~~i~--v~d~-~~-~~~~~vDv   66 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAG-KELS------F-KG--KELK--VEDL-TT-FDFSGVDI   66 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCC-Ceee------e-CC--ceeE--EeeC-CH-HHHcCCCE
Confidence            36899999 79999999999998654   456665432221 1110      0 01  0000  0011 11 23478999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+.++|.      -..++...+.++.|+++|+.+
T Consensus        67 Vf~A~g~------g~s~~~~~~~~~~G~~VIDlS   94 (334)
T PRK14874         67 ALFSAGG------SVSKKYAPKAAAAGAVVIDNS   94 (334)
T ss_pred             EEECCCh------HHHHHHHHHHHhCCCEEEECC
Confidence            9999883      234555553457889999876

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.48  E-value=0.047  Score=52.28  Aligned_cols=37  Identities=32%  Similarity=0.458  Sum_probs=33.9

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      .+.+++|.|+|+|..|..+|+.|+..|++|.++|...
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~   42 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNP   42 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCCh
Confidence            3678999999999999999999999999999999654

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=94.48  E-value=0.096  Score=47.09  Aligned_cols=82  Identities=21%  Similarity=0.078  Sum_probs=49.5

Q ss_pred             cCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       152 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      .+++|.|.| .|-||+.+++.|...|++|.++.|+.......... ....-....+.-...+......+.++++.+|+|+
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   81 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHL-LALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF   81 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHH-HhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence            368999999 69999999999999999999988764331100000 0000000000001111223456888899999887


Q ss_pred             EecC
Q 024297          231 CCLS  234 (269)
Q Consensus       231 ~~lp  234 (269)
                      .+..
T Consensus        82 h~A~   85 (322)
T PLN02662         82 HTAS   85 (322)
T ss_pred             EeCC
Confidence            7764

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.45  E-value=0.051  Score=52.66  Aligned_cols=36  Identities=25%  Similarity=0.487  Sum_probs=33.3

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      +.+++|.|+|+|..|.++|+.|+..|.+|.++|...
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            568899999999999999999999999999999654

>PRK07856 short chain dehydrogenase; Provisional

Probab=94.42  E-value=0.066  Score=46.48  Aligned_cols=38  Identities=24%  Similarity=0.420  Sum_probs=33.6

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      ++.||++.|.|. |.||+++++.|...|++|+..+|+..
T Consensus         3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~   41 (252)
T PRK07856          3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAP   41 (252)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChh
Confidence            367899999995 78999999999999999999998653

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=94.42  E-value=0.089  Score=47.85  Aligned_cols=97  Identities=22%  Similarity=0.220  Sum_probs=60.6

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      ..|.++.|.|.|.+|+.+++.++.+|++|++++++.++......    +    | ++..+... ........-...|+++
T Consensus       168 ~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~----g-~~~vi~~~-~~~~~~~~~~~~d~v~  237 (337)
T cd05283         168 GPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALK----L----G-ADEFIATK-DPEAMKKAAGSLDLII  237 (337)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----c----C-CcEEecCc-chhhhhhccCCceEEE
Confidence            35679999999999999999999999999999876543211000    0    0 00111100 0011122235689999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      .+.+..     ..-.+.++ .++++..+++++.
T Consensus       238 ~~~g~~-----~~~~~~~~-~l~~~G~~v~~g~  264 (337)
T cd05283         238 DTVSAS-----HDLDPYLS-LLKPGGTLVLVGA  264 (337)
T ss_pred             ECCCCc-----chHHHHHH-HhcCCCEEEEEec
Confidence            887632     11245677 8898888888864

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=94.41  E-value=0.086  Score=48.36  Aligned_cols=37  Identities=19%  Similarity=0.403  Sum_probs=33.3

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .|.+|.|+|.|.+|+.+++.++..|.+|++++++..+
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~  202 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEK  202 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHH
Confidence            4789999999999999999999999999999876544

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=94.40  E-value=0.13  Score=46.58  Aligned_cols=96  Identities=18%  Similarity=0.209  Sum_probs=58.2

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH---hhCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA---SKAD  227 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aD  227 (269)
                      -.|.+|.|.|.|.+|+.+++.++++|.+|++.+++..+......        -| ++..+..  ...++.+.+   ...|
T Consensus       162 ~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~--------~g-~~~~i~~--~~~~~~~~~~~~~~~d  230 (333)
T cd08296         162 KPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK--------LG-AHHYIDT--SKEDVAEALQELGGAK  230 (333)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH--------cC-CcEEecC--CCccHHHHHHhcCCCC
Confidence            35789999999999999999999999999999876543211100        00 0001110  112232222   3468


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +++.+....    .. -...++ .++++..+++++-
T Consensus       231 ~vi~~~g~~----~~-~~~~~~-~l~~~G~~v~~g~  260 (333)
T cd08296         231 LILATAPNA----KA-ISALVG-GLAPRGKLLILGA  260 (333)
T ss_pred             EEEECCCch----HH-HHHHHH-HcccCCEEEEEec
Confidence            888764311    12 233567 8888888888763

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=94.36  E-value=0.25  Score=44.53  Aligned_cols=91  Identities=15%  Similarity=0.042  Sum_probs=62.2

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      |++++|||-=.=-..+++.|...|++|..+.-....                   ..+.........++.++++|+|++-
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~i~p   61 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLE-------------------DGFTGAVKCELLELDLTTLDVVILP   61 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccc-------------------cccccceeecchhhhhccCCEEEEC
Confidence            678999998888889999999999998887632111                   0011111223455568999999999


Q ss_pred             cCCCccc----------cCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          233 LSLNKQT----------VKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       233 lp~t~~t----------~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +|.+.+.          +-.++++.++ .|+++++ +-+|.+
T Consensus        62 ~~~~~~~~~i~~~~~~~~~~l~~~~l~-~~~~~~~-~~~G~~  101 (287)
T TIGR02853        62 VPGTSHDGKVATVFSNEKVVLTPELLE-STKGHCT-IYVGIS  101 (287)
T ss_pred             CccccCCceEecccccCCccccHHHHH-hcCCCCE-EEEecC
Confidence            9976552          1235788999 9998665 444443

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=94.35  E-value=0.08  Score=48.64  Aligned_cols=84  Identities=20%  Similarity=0.107  Sum_probs=52.1

Q ss_pred             ccccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh
Q 024297          147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK  225 (269)
Q Consensus       147 ~~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  225 (269)
                      .+++..+++|.|.| .|-||+.+++.|...|.+|++++++..+......   .+. ..+.+.-...+......+.+++++
T Consensus         4 ~~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~---~~~-~~~~~~~~~~Dl~~~~~~~~~~~~   79 (353)
T PLN02896          4 EGRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLS---KWK-EGDRLRLFRADLQEEGSFDEAVKG   79 (353)
T ss_pred             cccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH---hhc-cCCeEEEEECCCCCHHHHHHHHcC
Confidence            35778999999999 6999999999999999999998876432110000   000 000000011111123456777888


Q ss_pred             CCEEEEecC
Q 024297          226 ADVVVCCLS  234 (269)
Q Consensus       226 aDvvv~~lp  234 (269)
                      .|+|+.+..
T Consensus        80 ~d~Vih~A~   88 (353)
T PLN02896         80 CDGVFHVAA   88 (353)
T ss_pred             CCEEEECCc
Confidence            998777654

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=94.35  E-value=0.044  Score=47.62  Aligned_cols=38  Identities=32%  Similarity=0.455  Sum_probs=34.2

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      .+.||++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~   45 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA   45 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            478999999995 99999999999999999999998654

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=94.33  E-value=0.1  Score=47.46  Aligned_cols=96  Identities=16%  Similarity=0.128  Sum_probs=58.6

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----  224 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----  224 (269)
                      -.|.+|.|.|. |.+|+.+++.++.+|++|++.+++..+.......       -| .+..+. .....++.+.+.     
T Consensus       150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~-------lG-a~~vi~-~~~~~~~~~~i~~~~~~  220 (338)
T cd08295         150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNK-------LG-FDDAFN-YKEEPDLDAALKRYFPN  220 (338)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh-------cC-CceeEE-cCCcccHHHHHHHhCCC
Confidence            35789999998 9999999999999999999988765432110000       00 001111 001113333222     


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ..|+++-++..     .. -.+.++ .++++..++++|
T Consensus       221 gvd~v~d~~g~-----~~-~~~~~~-~l~~~G~iv~~G  251 (338)
T cd08295         221 GIDIYFDNVGG-----KM-LDAVLL-NMNLHGRIAACG  251 (338)
T ss_pred             CcEEEEECCCH-----HH-HHHHHH-HhccCcEEEEec
Confidence            46888877641     11 244677 889998888876

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=94.32  E-value=0.099  Score=48.12  Aligned_cols=96  Identities=13%  Similarity=0.116  Sum_probs=59.0

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----  224 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----  224 (269)
                      -.|.+|.|.|. |.+|+.+++.++.+|++|++++++..+.......       -| ++..+.. ....++.+.+.     
T Consensus       157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~-------lG-a~~vi~~-~~~~~~~~~i~~~~~~  227 (348)
T PLN03154        157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK-------LG-FDEAFNY-KEEPDLDAALKRYFPE  227 (348)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh-------cC-CCEEEEC-CCcccHHHHHHHHCCC
Confidence            35789999999 9999999999999999999988655432110000       00 0111110 01123433332     


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ..|+++-++..     ..+ ...++ .++++..++.+|
T Consensus       228 gvD~v~d~vG~-----~~~-~~~~~-~l~~~G~iv~~G  258 (348)
T PLN03154        228 GIDIYFDNVGG-----DML-DAALL-NMKIHGRIAVCG  258 (348)
T ss_pred             CcEEEEECCCH-----HHH-HHHHH-HhccCCEEEEEC
Confidence            36888877641     122 44677 899999888776

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=94.29  E-value=0.072  Score=47.02  Aligned_cols=34  Identities=24%  Similarity=0.438  Sum_probs=30.9

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      .++-|+|.|.+++++++.++.+|++|+++|..+.
T Consensus       101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            4899999999999999999999999999996543

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.28  E-value=0.098  Score=49.02  Aligned_cols=68  Identities=25%  Similarity=0.289  Sum_probs=51.2

Q ss_pred             ccCCEEEEEec----------CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHH
Q 024297          151 LLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF  220 (269)
Q Consensus       151 l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  220 (269)
                      +.||||||+|+          .+-...++++|+..|++|.+||+.......                .......-..++.
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~----------------~~~~~~~~~~~~~  371 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAF----------------RNFPDVELESDAE  371 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHH----------------hcCCCceEeCCHH
Confidence            89999999996          366788999999999999999986544211                0100111236899


Q ss_pred             HHHhhCCEEEEecC
Q 024297          221 EFASKADVVVCCLS  234 (269)
Q Consensus       221 ell~~aDvvv~~lp  234 (269)
                      +++++||+++++..
T Consensus       372 ~~~~~aDaivi~te  385 (414)
T COG1004         372 EALKGADAIVINTE  385 (414)
T ss_pred             HHHhhCCEEEEecc
Confidence            99999999999954

>PRK06701 short chain dehydrogenase; Provisional

Probab=94.26  E-value=0.13  Score=46.09  Aligned_cols=39  Identities=26%  Similarity=0.217  Sum_probs=34.3

Q ss_pred             ccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       149 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      ..+.++++.|.| .|.||.++|+.|...|++|+.++++..
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~   81 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEH   81 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            467899999999 588999999999999999999988653

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=94.26  E-value=0.1  Score=48.38  Aligned_cols=89  Identities=18%  Similarity=0.133  Sum_probs=52.2

Q ss_pred             cCCEEEEEe-cCchHHHHHHHhccCCC---EEEEEc--CCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh
Q 024297          152 LGKTVFILG-FGNIGVELAKRLRPFGV---KIIATK--RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK  225 (269)
Q Consensus       152 ~g~~vgIiG-~G~iG~~~a~~l~~~G~---~V~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  225 (269)
                      ...+|+|+| .|.+|+++.++|...++   ++.++.  ++..+...       +   .|  .+..  . ...+. +.+.+
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~-------~---~~--~~~~--v-~~~~~-~~~~~   69 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVT-------F---EG--RDYT--V-EELTE-DSFDG   69 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeee-------e---cC--ceeE--E-EeCCH-HHHcC
Confidence            457899999 79999999999987554   444333  22211100       0   00  0000  0 11122 34588


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +|+|++++|..      +..+...+..+.|+.+|+.+
T Consensus        70 ~D~vf~a~p~~------~s~~~~~~~~~~g~~VIDlS  100 (344)
T PLN02383         70 VDIALFSAGGS------ISKKFGPIAVDKGAVVVDNS  100 (344)
T ss_pred             CCEEEECCCcH------HHHHHHHHHHhCCCEEEECC
Confidence            99999999843      33444442346789999876

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=94.25  E-value=0.075  Score=49.02  Aligned_cols=98  Identities=18%  Similarity=0.169  Sum_probs=60.4

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      ..|.+|.|+|.|.+|+.+++.++..|.+|++++++..+.......   +    | .+..... .....+.++....|+++
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~---~----G-a~~~i~~-~~~~~~~~~~~~~D~vi  249 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH---L----G-ADDYLVS-SDAAEMQEAADSLDYII  249 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh---c----C-CcEEecC-CChHHHHHhcCCCcEEE
Confidence            367899999999999999999999999998887654331110000   0    0 0000000 01122334444579999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      -++...    ..+ ...++ .++++..++.+|.
T Consensus       250 d~~g~~----~~~-~~~~~-~l~~~G~iv~~G~  276 (357)
T PLN02514        250 DTVPVF----HPL-EPYLS-LLKLDGKLILMGV  276 (357)
T ss_pred             ECCCch----HHH-HHHHH-HhccCCEEEEECC
Confidence            887522    112 33677 8999999998873

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.24  E-value=0.042  Score=49.94  Aligned_cols=38  Identities=26%  Similarity=0.443  Sum_probs=35.3

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  188 (269)
                      -.|++++|.|+|.+|.++++-+++.|+ +|+++|.++++
T Consensus       191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~K  229 (375)
T KOG0022|consen  191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDK  229 (375)
T ss_pred             CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHH
Confidence            468999999999999999999999998 79999998876

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=94.24  E-value=0.067  Score=39.98  Aligned_cols=66  Identities=15%  Similarity=0.117  Sum_probs=41.2

Q ss_pred             CCEEEEEecCchHHHHHHHhc-cCCCE-EEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh--CCE
Q 024297          153 GKTVFILGFGNIGVELAKRLR-PFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADV  228 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~-~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDv  228 (269)
                      ..++.|+|+|+.|++++.... ..|++ +.++|.++.+--.                 ......-+.+++++.+.  .|+
T Consensus         3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~-----------------~i~gipV~~~~~~l~~~~~i~i   65 (96)
T PF02629_consen    3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGK-----------------EIGGIPVYGSMDELEEFIEIDI   65 (96)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTS-----------------EETTEEEESSHHHHHHHCTTSE
T ss_pred             CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCc-----------------EECCEEeeccHHHhhhhhCCCE
Confidence            458999999999999986444 45765 4556655543110                 01111122467777766  999


Q ss_pred             EEEecCC
Q 024297          229 VVCCLSL  235 (269)
Q Consensus       229 vv~~lp~  235 (269)
                      -++++|.
T Consensus        66 aii~VP~   72 (96)
T PF02629_consen   66 AIITVPA   72 (96)
T ss_dssp             EEEES-H
T ss_pred             EEEEcCH
Confidence            9999984

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=94.23  E-value=0.19  Score=52.81  Aligned_cols=90  Identities=24%  Similarity=0.261  Sum_probs=61.7

Q ss_pred             CCCCCc-cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccc------------
Q 024297          142 KLGVPT-GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDD------------  208 (269)
Q Consensus       142 ~w~~~~-~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  208 (269)
                      .|..+. ...-.|++|+|||-|..|.+.|..|...|..|++|.|+.+.--.     .-|.+||=..+.            
T Consensus      1773 gwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggl-----l~ygipnmkldk~vv~rrv~ll~~ 1847 (2142)
T KOG0399|consen 1773 GWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGL-----LMYGIPNMKLDKFVVQRRVDLLEQ 1847 (2142)
T ss_pred             cCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCce-----eeecCCccchhHHHHHHHHHHHHh
Confidence            476542 34568999999999999999999999999999999987654211     112222211000            


Q ss_pred             ----cc--cccCCCCCHHHHHhhCCEEEEecCCC
Q 024297          209 ----LV--DEKGCHEDIFEFASKADVVVCCLSLN  236 (269)
Q Consensus       209 ----~~--~~~~~~~~l~ell~~aDvvv~~lp~t  236 (269)
                          ..  .+.+...+++++.++-|.||++.-.|
T Consensus      1848 egi~f~tn~eigk~vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1848 EGIRFVTNTEIGKHVSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred             hCceEEeeccccccccHHHHhhccCeEEEEeCCC
Confidence                00  12234578999999999999996544

>PLN02602 lactate dehydrogenase

Probab=94.22  E-value=0.11  Score=48.25  Aligned_cols=35  Identities=17%  Similarity=0.352  Sum_probs=30.1

Q ss_pred             CEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWAS  188 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~  188 (269)
                      ++|+|||.|.+|..+|..+...|.  ++..+|.+...
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~   74 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDK   74 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCch
Confidence            699999999999999998886554  79999986643

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=94.22  E-value=0.1  Score=48.69  Aligned_cols=96  Identities=19%  Similarity=0.205  Sum_probs=58.9

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      .|++|.|.|.|.+|+.+++.++.+|++|++++++.++.......       -| .+..+.. .....+.+.....|+|+-
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~-------lG-a~~~i~~-~~~~~v~~~~~~~D~vid  248 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR-------LG-ADSFLVT-TDSQKMKEAVGTMDFIID  248 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHh-------CC-CcEEEcC-cCHHHHHHhhCCCcEEEE
Confidence            58899999999999999999999999999988654331110000       00 0001100 001123344445799988


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +....    ..+ ...++ .++++..++.+|
T Consensus       249 ~~G~~----~~~-~~~~~-~l~~~G~iv~vG  273 (375)
T PLN02178        249 TVSAE----HAL-LPLFS-LLKVSGKLVALG  273 (375)
T ss_pred             CCCcH----HHH-HHHHH-hhcCCCEEEEEc
Confidence            76421    112 33567 788898888876

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=94.18  E-value=0.082  Score=49.67  Aligned_cols=40  Identities=25%  Similarity=0.357  Sum_probs=35.3

Q ss_pred             cccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       148 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      +....+++|.|+|. |.||+.+++.|...|.+|++++|+..
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~   95 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKS   95 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechh
Confidence            45678889999995 99999999999999999999998764

>PLN02740 Alcohol dehydrogenase-like

Probab=94.18  E-value=0.14  Score=47.56  Aligned_cols=38  Identities=32%  Similarity=0.496  Sum_probs=33.6

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  188 (269)
                      -.|.+|.|+|.|.+|..+++.++.+|+ +|++++++..+
T Consensus       197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r  235 (381)
T PLN02740        197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEK  235 (381)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHH
Confidence            468899999999999999999999999 69999876544

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=94.17  E-value=0.064  Score=47.07  Aligned_cols=38  Identities=24%  Similarity=0.449  Sum_probs=33.0

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWAS  188 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~  188 (269)
                      -.|.++.|.|.|.+|+.+++.++.+|.+ |++++++.++
T Consensus        96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~  134 (277)
T cd08255          96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAAR  134 (277)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHH
Confidence            4678999999999999999999999999 9998865443

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=94.15  E-value=0.086  Score=47.59  Aligned_cols=44  Identities=34%  Similarity=0.455  Sum_probs=37.7

Q ss_pred             CCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCC
Q 024297          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (269)
Q Consensus       143 w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~  186 (269)
                      |.......|..++|.|+|+|.+|.++|+.|...|. +|+.+|...
T Consensus         9 ~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~   53 (286)
T cd01491           9 LGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP   53 (286)
T ss_pred             cCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence            55444567999999999999999999999999999 599999654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.14  E-value=0.038  Score=50.51  Aligned_cols=100  Identities=12%  Similarity=0.019  Sum_probs=62.8

Q ss_pred             hHHHHHHHhccCCCEEEEEcCCCCCcc----------ccccccchhhhccccccc-----cccccCCC--CCHHHHHhhC
Q 024297          164 IGVELAKRLRPFGVKIIATKRSWASHS----------QVSCQSSALAVKNGIIDD-----LVDEKGCH--EDIFEFASKA  226 (269)
Q Consensus       164 iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~~l~ell~~a  226 (269)
                      ||..+|..+...|++|..+|+++....          .............|.+..     ........  .+..+.+++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            688999999999999999999874210          000000011111222111     00111111  1366888999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      |+|+-++|-+.+.+.-+-.+..+ .++++++|....-+
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~-~~~~~~ilaSntS~  117 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGR-HVDADAIIASTTST  117 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHh-hCCCCcEEEEcccc
Confidence            99999999988887766666666 89999999766544

>PRK06398 aldose dehydrogenase; Validated

Probab=94.13  E-value=0.11  Score=45.40  Aligned_cols=39  Identities=26%  Similarity=0.311  Sum_probs=34.4

Q ss_pred             cccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ++.||++.|.| .|.||+++|+.|...|++|+..+|+...
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~   42 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS   42 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc
Confidence            47899999999 5699999999999999999999987543

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=94.12  E-value=0.1  Score=48.62  Aligned_cols=35  Identities=31%  Similarity=0.345  Sum_probs=31.9

Q ss_pred             cCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCC
Q 024297          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       152 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      .+++|.|.|. |-||+.+++.|...|.+|++++|..
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            5689999996 9999999999999999999999754

>PRK07985 oxidoreductase; Provisional

Probab=94.09  E-value=0.16  Score=45.54  Aligned_cols=37  Identities=16%  Similarity=0.147  Sum_probs=32.6

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      .+.+|++.|.|. |.||+++|+.|...|++|+..+++.
T Consensus        46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~   83 (294)
T PRK07985         46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPV   83 (294)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCc
Confidence            478899999994 8999999999999999999887643

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=94.06  E-value=0.092  Score=48.13  Aligned_cols=38  Identities=24%  Similarity=0.289  Sum_probs=33.4

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      +.|++|.|.|. |-||+.+++.|...|.+|++++|+...
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~   40 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPT   40 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCcc
Confidence            46789999995 899999999999999999999986543

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=94.06  E-value=0.12  Score=47.84  Aligned_cols=38  Identities=32%  Similarity=0.411  Sum_probs=33.4

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  188 (269)
                      -.|.+|.|+|.|.+|+.+++.++.+|. +|++++++..+
T Consensus       184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~  222 (368)
T TIGR02818       184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAK  222 (368)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence            357899999999999999999999999 79999876544

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK04148 hypothetical protein; Provisional

Probab=94.05  E-value=0.06  Score=43.08  Aligned_cols=36  Identities=25%  Similarity=0.384  Sum_probs=32.4

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .++++.+||.| -|..+|+.|...|++|+++|.++..
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~a   51 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKA   51 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHH
Confidence            46789999999 9999999999999999999987753

>PRK06179 short chain dehydrogenase; Provisional

Probab=94.05  E-value=0.096  Score=45.88  Aligned_cols=37  Identities=27%  Similarity=0.372  Sum_probs=32.0

Q ss_pred             cCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       152 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .++++.|.| .|.||+++++.|...|++|++.+|+...
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~   40 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPAR   40 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            357888998 6899999999999999999999987543

>PRK09186 flagellin modification protein A; Provisional

Probab=94.01  E-value=0.08  Score=45.81  Aligned_cols=38  Identities=37%  Similarity=0.453  Sum_probs=33.5

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      +.+|++.|.|. |.||+++|+.|...|++|++.+|+.++
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~   40 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEA   40 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHH
Confidence            56899999995 899999999999999999999887543

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=94.00  E-value=0.12  Score=47.53  Aligned_cols=76  Identities=18%  Similarity=0.050  Sum_probs=45.1

Q ss_pred             CEEEEEec-CchHHHHHHHhccCCC-------EEEEEcCCCCCc-cccccccchhhhccccccccccccCCCCCHHHHHh
Q 024297          154 KTVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSWASH-SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS  224 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  224 (269)
                      ++|+|||. |.+|..+|..+...|.       ++..+|.+.... .....  .++.  +.. ........-..+..+.++
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a--~Dl~--~~~-~~~~~~~~i~~~~~~~~~   77 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVA--MELE--DCA-FPLLAEIVITDDPNVAFK   77 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceee--hhhh--hcc-ccccCceEEecCcHHHhC
Confidence            48999999 9999999998886555       799999854321 11000  0000  000 000000000134568899


Q ss_pred             hCCEEEEecC
Q 024297          225 KADVVVCCLS  234 (269)
Q Consensus       225 ~aDvvv~~lp  234 (269)
                      +||+|+++.-
T Consensus        78 daDivvitaG   87 (322)
T cd01338          78 DADWALLVGA   87 (322)
T ss_pred             CCCEEEEeCC
Confidence            9999999864

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02214 cinnamoyl-CoA reductase

Probab=94.00  E-value=0.13  Score=47.12  Aligned_cols=84  Identities=20%  Similarity=0.066  Sum_probs=52.1

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      .+.+++|.|.|. |-||+.+++.|...|.+|.++.|+.........  .......+.+.-...+.....++.++++.+|+
T Consensus         7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   84 (342)
T PLN02214          7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHL--RELEGGKERLILCKADLQDYEALKAAIDGCDG   84 (342)
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHH--HHhhCCCCcEEEEecCcCChHHHHHHHhcCCE
Confidence            357889999997 999999999999999999999886543110000  00000000000011112234568888999998


Q ss_pred             EEEecCC
Q 024297          229 VVCCLSL  235 (269)
Q Consensus       229 vv~~lp~  235 (269)
                      |+.+...
T Consensus        85 Vih~A~~   91 (342)
T PLN02214         85 VFHTASP   91 (342)
T ss_pred             EEEecCC
Confidence            8887643

>PRK06392 homoserine dehydrogenase; Provisional

Probab=93.99  E-value=0.11  Score=47.76  Aligned_cols=29  Identities=21%  Similarity=0.681  Sum_probs=24.3

Q ss_pred             EEEEEecCchHHHHHHHhcc--------CCCEEEEEc
Q 024297          155 TVFILGFGNIGVELAKRLRP--------FGVKIIATK  183 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~--------~G~~V~~~~  183 (269)
                      +|+|+|||++|+.+++.+..        ++.+|.++.
T Consensus         2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVs   38 (326)
T PRK06392          2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVS   38 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEE
Confidence            79999999999999999865        567766654

>PRK07877 hypothetical protein; Provisional

Probab=93.98  E-value=0.078  Score=53.73  Aligned_cols=99  Identities=14%  Similarity=0.105  Sum_probs=62.8

Q ss_pred             ccccccCCEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCCccccccccchhhhcc------------------ccc
Q 024297          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKN------------------GII  206 (269)
Q Consensus       147 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~  206 (269)
                      ....|++++|+|+|+| +|..+|..|...|.  +++.+|...-. ....... -+...+                  ++-
T Consensus       101 ~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve-~sNLnRq-~~~~~diG~~Kv~~a~~~l~~inp~i~  177 (722)
T PRK07877        101 EQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLE-LSNLNRV-PAGVFDLGVNKAVVAARRIAELDPYLP  177 (722)
T ss_pred             HHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEc-ccccccc-cCChhhcccHHHHHHHHHHHHHCCCCE
Confidence            3467999999999999 99999999999884  78888743211 1111110 011111                  000


Q ss_pred             cccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297          207 DDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS  249 (269)
Q Consensus       207 ~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~  249 (269)
                      ........+.++++++++.+|+|+-|+- +-+++.++++...+
T Consensus       178 v~~~~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~  219 (722)
T PRK07877        178 VEVFTDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARA  219 (722)
T ss_pred             EEEEeccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHH
Confidence            0011111133578899999999999987 56888888876555

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=93.98  E-value=0.13  Score=46.28  Aligned_cols=94  Identities=20%  Similarity=0.112  Sum_probs=57.3

Q ss_pred             ccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH-----h
Q 024297          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-----S  224 (269)
Q Consensus       151 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~  224 (269)
                      -.|.+|.|.| .|.+|+.+++.++.+|++|++++++.++.....        ..| ++..++.  ...++.+.+     .
T Consensus       142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~--------~~G-a~~vi~~--~~~~~~~~v~~~~~~  210 (329)
T cd08294         142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLK--------ELG-FDAVFNY--KTVSLEEALKEAAPD  210 (329)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--------HcC-CCEEEeC--CCccHHHHHHHHCCC
Confidence            3578999999 699999999999999999999887654321100        001 0111111  112332222     1


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ..|+++-++..  .  .  ..+.++ .++++..+++++
T Consensus       211 gvd~vld~~g~--~--~--~~~~~~-~l~~~G~iv~~g  241 (329)
T cd08294         211 GIDCYFDNVGG--E--F--SSTVLS-HMNDFGRVAVCG  241 (329)
T ss_pred             CcEEEEECCCH--H--H--HHHHHH-hhccCCEEEEEc
Confidence            36888776541  1  1  245677 888888888776

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=93.94  E-value=0.15  Score=46.83  Aligned_cols=76  Identities=17%  Similarity=0.040  Sum_probs=45.0

Q ss_pred             CEEEEEec-CchHHHHHHHhccCCC-------EEEEEcCCCCCc-cccccccchhhhccccccccccccCCCCCHHHHHh
Q 024297          154 KTVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSWASH-SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS  224 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  224 (269)
                      .+|+|||. |.+|..+|..|...|.       ++..+|.+.... .....  .++.  +.. ........-..+..+.++
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a--~Dl~--~~~-~~~~~~~~i~~~~~~~~~   78 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVA--MELE--DCA-FPLLAGVVATTDPEEAFK   78 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHH--HHHh--hcc-ccccCCcEEecChHHHhC
Confidence            38999998 9999999998886664       799999864221 11000  0000  000 000000001135568899


Q ss_pred             hCCEEEEecC
Q 024297          225 KADVVVCCLS  234 (269)
Q Consensus       225 ~aDvvv~~lp  234 (269)
                      +||+||++.-
T Consensus        79 daDvVVitAG   88 (323)
T TIGR01759        79 DVDAALLVGA   88 (323)
T ss_pred             CCCEEEEeCC
Confidence            9999999864

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=93.87  E-value=0.16  Score=46.69  Aligned_cols=77  Identities=17%  Similarity=0.063  Sum_probs=45.7

Q ss_pred             EEEEEec-CchHHHHHHHhccCC-------CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          155 TVFILGF-GNIGVELAKRLRPFG-------VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       155 ~vgIiG~-G~iG~~~a~~l~~~G-------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +|+|+|. |.+|..++..|...+       .+|..+|++........ ...++.  +.. ...........++.+.++.|
T Consensus         4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g-~~~Dl~--d~~-~~~~~~~~~~~~~~~~l~~a   79 (325)
T cd01336           4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEG-VVMELQ--DCA-FPLLKSVVATTDPEEAFKDV   79 (325)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccc-eeeehh--hcc-ccccCCceecCCHHHHhCCC
Confidence            7999999 999999999987643       48999998653211100 000000  000 00000001135677889999


Q ss_pred             CEEEEecCC
Q 024297          227 DVVVCCLSL  235 (269)
Q Consensus       227 Dvvv~~lp~  235 (269)
                      |+|+.+.-.
T Consensus        80 DiVI~tAG~   88 (325)
T cd01336          80 DVAILVGAM   88 (325)
T ss_pred             CEEEEeCCc
Confidence            999988543

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=93.87  E-value=0.085  Score=47.99  Aligned_cols=66  Identities=21%  Similarity=0.250  Sum_probs=45.0

Q ss_pred             CEEEEEecCchHH-HHHHHhccCC--CE-EEEEcCCCCCccccccccchhhhccccccccccccC---CCCCHHHHHhh-
Q 024297          154 KTVFILGFGNIGV-ELAKRLRPFG--VK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASK-  225 (269)
Q Consensus       154 ~~vgIiG~G~iG~-~~a~~l~~~G--~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~-  225 (269)
                      .+|||||+|.+++ ..+..+...+  +. |-++|++..+..                 .....++   .+.+++++++. 
T Consensus         4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~-----------------~~a~~~~~~~~~~~~~~ll~~~   66 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAE-----------------AFAEEFGIAKAYTDLEELLADP   66 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHH-----------------HHHHHcCCCcccCCHHHHhcCC
Confidence            5899999997775 5777887776  45 555577665421                 1122222   35789999996 


Q ss_pred             -CCEEEEecCCC
Q 024297          226 -ADVVVCCLSLN  236 (269)
Q Consensus       226 -aDvvv~~lp~t  236 (269)
                       .|+|+++.|..
T Consensus        67 ~iD~V~Iatp~~   78 (342)
T COG0673          67 DIDAVYIATPNA   78 (342)
T ss_pred             CCCEEEEcCCCh
Confidence             59999998843

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=93.86  E-value=0.053  Score=50.22  Aligned_cols=94  Identities=22%  Similarity=0.227  Sum_probs=57.2

Q ss_pred             EEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCC--CCCHHHHHh--hCCEE
Q 024297          155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC--HEDIFEFAS--KADVV  229 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~--~aDvv  229 (269)
                      +|.|+|.|.||...++.++.+|+ +|++.|++..+.......        +..+........  .....++..  .+|++
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~--------~g~~~~~~~~~~~~~~~~~~~t~g~g~D~v  242 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEA--------GGADVVVNPSEDDAGAEILELTGGRGADVV  242 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHh--------CCCeEeecCccccHHHHHHHHhCCCCCCEE
Confidence            99999999999999999999997 688888876653221110        000000000000  001223333  48999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +-+.. ++.   .+ .+.++ ..+++..++.+|
T Consensus       243 ie~~G-~~~---~~-~~ai~-~~r~gG~v~~vG  269 (350)
T COG1063         243 IEAVG-SPP---AL-DQALE-ALRPGGTVVVVG  269 (350)
T ss_pred             EECCC-CHH---HH-HHHHH-HhcCCCEEEEEe
Confidence            99986 221   22 34667 789998888776

>PLN02780 ketoreductase/ oxidoreductase

Probab=93.86  E-value=0.15  Score=46.55  Aligned_cols=38  Identities=21%  Similarity=0.283  Sum_probs=33.4

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ..|+++.|.|. |.||+++|+.|...|++|+.++|+.++
T Consensus        51 ~~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~   89 (320)
T PLN02780         51 KYGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDK   89 (320)
T ss_pred             ccCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHH
Confidence            36899999995 789999999999999999999987643

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=93.82  E-value=0.14  Score=46.34  Aligned_cols=74  Identities=20%  Similarity=0.183  Sum_probs=44.7

Q ss_pred             EEEEecCchHHHHHHHhccCC--CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297          156 VFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (269)
Q Consensus       156 vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l  233 (269)
                      |+|||.|.+|..+|..+...|  .++..+|++..........-.+......     ........+ .+.++.||+|+++.
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~-----~~~i~~~~~-~~~l~~aDiVIita   74 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLA-----TGTIVRGGD-YADAADADIVVITA   74 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccC-----CCeEEECCC-HHHhCCCCEEEEcC
Confidence            589999999999999998877  5899999876542111000000000000     000001133 46889999999998


Q ss_pred             CC
Q 024297          234 SL  235 (269)
Q Consensus       234 p~  235 (269)
                      ..
T Consensus        75 g~   76 (300)
T cd00300          75 GA   76 (300)
T ss_pred             CC
Confidence            63

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK07326 short chain dehydrogenase; Provisional

Probab=93.81  E-value=0.068  Score=45.71  Aligned_cols=37  Identities=35%  Similarity=0.418  Sum_probs=32.7

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      +.++++.|+|. |.+|+.+++.|...|++|++++|+..
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~   41 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQK   41 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHH
Confidence            45789999984 99999999999999999999998754

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=93.76  E-value=0.12  Score=47.59  Aligned_cols=38  Identities=26%  Similarity=0.267  Sum_probs=33.5

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      .+++++|.|.|. |-||+.+++.|...|.+|+++++...
T Consensus        12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~   50 (348)
T PRK15181         12 VLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFST   50 (348)
T ss_pred             cccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            367799999995 99999999999999999999997543

>PRK06172 short chain dehydrogenase; Provisional

Probab=93.76  E-value=0.069  Score=46.26  Aligned_cols=39  Identities=28%  Similarity=0.375  Sum_probs=34.4

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .+.+|++.|.|. |.||+++++.|...|++|++++|+..+
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~   43 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAG   43 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            367899999995 799999999999999999999987543

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=93.74  E-value=0.043  Score=46.75  Aligned_cols=43  Identities=30%  Similarity=0.468  Sum_probs=37.0

Q ss_pred             CCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCC
Q 024297          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (269)
Q Consensus       143 w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  185 (269)
                      |.......|++++|.|+|.|.+|.++++.|...|. +++.+|..
T Consensus         9 ~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485           9 WGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            55545567999999999999999999999999998 58888854

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=93.70  E-value=0.88  Score=44.66  Aligned_cols=120  Identities=8%  Similarity=0.095  Sum_probs=83.1

Q ss_pred             chHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhcc----CCC-------EEEEE
Q 024297          114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRP----FGV-------KIIAT  182 (269)
Q Consensus       114 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~----~G~-------~V~~~  182 (269)
                      ..+|-.+++.+|+.+|-                .++.|.+.+|.|.|.|+.|-.+|+.+..    .|.       +++.+
T Consensus       274 QGTaaV~lAgll~Alr~----------------~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~v  337 (559)
T PTZ00317        274 QGTGAVIAAGFLNALKL----------------SGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLV  337 (559)
T ss_pred             hhHHHHHHHHHHHHHHH----------------hCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEE
Confidence            34677888888888885                3578999999999999999999998873    577       79999


Q ss_pred             cCCCCCcccc----ccccchhhhcccccccccccc--C---CCCCHHHHHhhC--CEEEEecCCCccccCcCCHHHHhhh
Q 024297          183 KRSWASHSQV----SCQSSALAVKNGIIDDLVDEK--G---CHEDIFEFASKA--DVVVCCLSLNKQTVKLCSSSLSSKS  251 (269)
Q Consensus       183 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~---~~~~l~ell~~a--Dvvv~~lp~t~~t~~li~~~~l~~~  251 (269)
                      |+..--....    ......|          ....  .   ...+|.|+++..  |+++-+-    ..-+.|+++.++ .
T Consensus       338 D~~GLl~~~r~~~l~~~k~~f----------a~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S----~~~g~Ft~evv~-~  402 (559)
T PTZ00317        338 DSKGLVTTTRGDKLAKHKVPF----------ARTDISAEDSSLKTLEDVVRFVKPTALLGLS----GVGGVFTEEVVK-T  402 (559)
T ss_pred             cCCCeEeCCCCccccHHHHHH----------hccccccccccCCCHHHHHhccCCCEEEEec----CCCCCCCHHHHH-H
Confidence            9764321100    0000011          1111  0   135899999998  9888763    123799999999 8


Q ss_pred             CCC---CcEEEEccCC
Q 024297          252 MFF---ATYVVFMFQG  264 (269)
Q Consensus       252 mk~---ga~lIN~~RG  264 (269)
                      |.+   ..++.=.|..
T Consensus       403 Ma~~~~rPIIFaLSNP  418 (559)
T PTZ00317        403 MASNVERPIIFPLSNP  418 (559)
T ss_pred             HHhcCCCCEEEECCCC
Confidence            884   7777766654

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]

Probab=93.69  E-value=0.23  Score=48.53  Aligned_cols=78  Identities=18%  Similarity=0.219  Sum_probs=62.8

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +-.+.|+...++|-.. +|..++.+|+-....|+.+-.   +                           ..++.+.+.++
T Consensus       157 ~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHS---K---------------------------T~~lae~v~~A  206 (935)
T KOG4230|consen  157 GVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHS---K---------------------------TRNLAEKVSRA  206 (935)
T ss_pred             CCccccceeEEEecccccCChHHHHHHhcCceEEEecC---C---------------------------CccHHHHhccC
Confidence            4679999999999776 599999999999999999752   1                           25788999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |+|+.++--    .+++-.+    .+|||+++|++|=
T Consensus       207 DIvIvAiG~----PefVKgd----WiKpGavVIDvGI  235 (935)
T KOG4230|consen  207 DIVIVAIGQ----PEFVKGD----WIKPGAVVIDVGI  235 (935)
T ss_pred             CEEEEEcCC----cceeecc----cccCCcEEEEccc
Confidence            999999852    2455443    6789999999973

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.69  E-value=0.086  Score=50.26  Aligned_cols=37  Identities=22%  Similarity=0.456  Sum_probs=33.8

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      +.++++.|+|.|.+|.++|+.|...|++|.++|....
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            5689999999999999999999999999999997654

>PRK07062 short chain dehydrogenase; Provisional

Probab=93.66  E-value=0.08  Score=46.25  Aligned_cols=40  Identities=20%  Similarity=0.240  Sum_probs=35.0

Q ss_pred             ccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       149 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ..+.||++.|.|. |.||+++|+.|...|++|++.+|+..+
T Consensus         4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~   44 (265)
T PRK07062          4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEER   44 (265)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            3578999999996 679999999999999999999987543

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.65  E-value=0.082  Score=50.87  Aligned_cols=38  Identities=21%  Similarity=0.329  Sum_probs=34.4

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      ..+.+++|.|+|.|.+|.++|+.|+..|++|+++|+..
T Consensus        12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            45778999999999999999999999999999998654

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=93.65  E-value=0.084  Score=50.03  Aligned_cols=80  Identities=24%  Similarity=0.280  Sum_probs=50.7

Q ss_pred             ccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       149 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      .++.||++.|.|. |.||+++++.|...|++|++++++.++.......      ..........+....+++.+.+.+.|
T Consensus       174 ~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~------~~~~v~~v~~Dvsd~~~v~~~l~~ID  247 (406)
T PRK07424        174 LSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEING------EDLPVKTLHWQVGQEAALAELLEKVD  247 (406)
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh------cCCCeEEEEeeCCCHHHHHHHhCCCC
Confidence            4678999999996 8999999999999999999998765331110000      00000000011112345667788899


Q ss_pred             EEEEecC
Q 024297          228 VVVCCLS  234 (269)
Q Consensus       228 vvv~~lp  234 (269)
                      +++++..
T Consensus       248 iLInnAG  254 (406)
T PRK07424        248 ILIINHG  254 (406)
T ss_pred             EEEECCC
Confidence            9998653

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=93.64  E-value=0.2  Score=45.76  Aligned_cols=97  Identities=21%  Similarity=0.226  Sum_probs=60.2

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCC---CCHHHHHh--
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH---EDIFEFAS--  224 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~--  224 (269)
                      ..|++|.|.|.|.+|+.+++.++.+|+ +|++++++..+.....        ..| .+..+.. ...   ..+.++..  
T Consensus       171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~--------~~g-a~~~i~~-~~~~~~~~l~~~~~~~  240 (351)
T cd08233         171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAE--------ELG-ATIVLDP-TEVDVVAEVRKLTGGG  240 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH--------HhC-CCEEECC-CccCHHHHHHHHhCCC
Confidence            357899999999999999999999999 8988886554421100        001 0111110 011   12333333  


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ..|+++-+.... .   . -.+.++ .++++..++.++.
T Consensus       241 ~~d~vid~~g~~-~---~-~~~~~~-~l~~~G~~v~~g~  273 (351)
T cd08233         241 GVDVSFDCAGVQ-A---T-LDTAID-ALRPRGTAVNVAI  273 (351)
T ss_pred             CCCEEEECCCCH-H---H-HHHHHH-hccCCCEEEEEcc
Confidence            389999886521 1   1 234677 8999999988764

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=93.64  E-value=0.18  Score=45.46  Aligned_cols=80  Identities=21%  Similarity=0.089  Sum_probs=49.1

Q ss_pred             cCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhc-c-ccccccccccCCCCCHHHHHhhCCE
Q 024297          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVK-N-GIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       152 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      .+|++.|.| .|-||+.+++.|...|++|+++.++..........   .... . ..+.-...+.....++.++++..|+
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~   80 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHL---LALDGAKERLKLFKADLLDEGSFELAIDGCET   80 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHH---HhccCCCCceEEEeCCCCCchHHHHHHcCCCE
Confidence            368999999 59999999999999999998887665431100000   0000 0 0000011112234567888889998


Q ss_pred             EEEecC
Q 024297          229 VVCCLS  234 (269)
Q Consensus       229 vv~~lp  234 (269)
                      |+.+..
T Consensus        81 vih~A~   86 (325)
T PLN02989         81 VFHTAS   86 (325)
T ss_pred             EEEeCC
Confidence            888764

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=93.63  E-value=0.089  Score=50.46  Aligned_cols=37  Identities=27%  Similarity=0.385  Sum_probs=33.3

Q ss_pred             ccCCEEEEEecCchHHH-HHHHhccCCCEEEEEcCCCC
Q 024297          151 LLGKTVFILGFGNIGVE-LAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~-~a~~l~~~G~~V~~~~~~~~  187 (269)
                      ..+++|.|+|+|..|.+ +|+.|+..|++|+++|....
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            46789999999999999 79999999999999997543

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=93.63  E-value=0.12  Score=43.54  Aligned_cols=67  Identities=22%  Similarity=0.304  Sum_probs=43.6

Q ss_pred             EEEEEecCchHHHHHHHh--ccCCCE-EEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh--hCCEE
Q 024297          155 TVFILGFGNIGVELAKRL--RPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADVV  229 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l--~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDvv  229 (269)
                      ++.|||.|++|++++..=  +..||+ |-+||..+..--.          ..+   +  -.....++|++.++  +.|+.
T Consensus        86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~----------~~~---~--v~V~~~d~le~~v~~~dv~ia  150 (211)
T COG2344          86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGT----------KIG---D--VPVYDLDDLEKFVKKNDVEIA  150 (211)
T ss_pred             eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCc----------ccC---C--eeeechHHHHHHHHhcCccEE
Confidence            688999999999999853  357898 5567755432100          000   0  00113467888888  67899


Q ss_pred             EEecCCC
Q 024297          230 VCCLSLN  236 (269)
Q Consensus       230 v~~lp~t  236 (269)
                      ++|+|..
T Consensus       151 iLtVPa~  157 (211)
T COG2344         151 ILTVPAE  157 (211)
T ss_pred             EEEccHH
Confidence            9999943

>PRK12367 short chain dehydrogenase; Provisional

Probab=93.63  E-value=0.13  Score=45.08  Aligned_cols=78  Identities=26%  Similarity=0.256  Sum_probs=49.9

Q ss_pred             ccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       149 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      ..+.|+++.|.|. |.||+++|+.|...|++|++++|+.........        .+......-+....+++.+.+...|
T Consensus        10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~iD   81 (245)
T PRK12367         10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESND--------ESPNEWIKWECGKEESLDKQLASLD   81 (245)
T ss_pred             HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhc--------cCCCeEEEeeCCCHHHHHHhcCCCC
Confidence            4578899999996 789999999999999999999886522111000        0000000011112234566777899


Q ss_pred             EEEEecC
Q 024297          228 VVVCCLS  234 (269)
Q Consensus       228 vvv~~lp  234 (269)
                      ++|++.-
T Consensus        82 ilVnnAG   88 (245)
T PRK12367         82 VLILNHG   88 (245)
T ss_pred             EEEECCc
Confidence            9998864

>cd00704 MDH Malate dehydrogenase

Probab=93.63  E-value=0.18  Score=46.24  Aligned_cols=68  Identities=19%  Similarity=0.062  Sum_probs=44.4

Q ss_pred             CEEEEEec-CchHHHHHHHhccCCC-------EEEEEcCCC--CCccccccccchhhhcccccccccccc-------CCC
Q 024297          154 KTVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSW--ASHSQVSCQSSALAVKNGIIDDLVDEK-------GCH  216 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  216 (269)
                      .+|+|+|. |.+|..++..|...|.       ++..+|++.  +.. ....            .++.+..       .-.
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~-~g~~------------~Dl~d~~~~~~~~~~i~   67 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKAL-EGVV------------MELQDCAFPLLKGVVIT   67 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCcc-ceee------------eehhhhcccccCCcEEe
Confidence            37999999 9999999998876442       599999875  321 1000            0111110       011


Q ss_pred             CCHHHHHhhCCEEEEecC
Q 024297          217 EDIFEFASKADVVVCCLS  234 (269)
Q Consensus       217 ~~l~ell~~aDvvv~~lp  234 (269)
                      .+..+.+++||+||++.-
T Consensus        68 ~~~~~~~~~aDiVVitAG   85 (323)
T cd00704          68 TDPEEAFKDVDVAILVGA   85 (323)
T ss_pred             cChHHHhCCCCEEEEeCC
Confidence            456788999999998854

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK10206 putative oxidoreductase; Provisional

Probab=93.62  E-value=0.11  Score=48.02  Aligned_cols=67  Identities=13%  Similarity=0.197  Sum_probs=40.5

Q ss_pred             EEEEEecCchHHH-HHHHh-cc-CCCEEEE-EcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh--hCCE
Q 024297          155 TVFILGFGNIGVE-LAKRL-RP-FGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV  228 (269)
Q Consensus       155 ~vgIiG~G~iG~~-~a~~l-~~-~G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDv  228 (269)
                      ++||||+|.+++. .+..+ .. -+++|.+ +|++.... ...              ........+.++++++.  +.|+
T Consensus         3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~--------------~~~~~~~~~~~~~ell~~~~iD~   67 (344)
T PRK10206          3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQA--------------PIYSHIHFTSDLDEVLNDPDVKL   67 (344)
T ss_pred             EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHH--------------HhcCCCcccCCHHHHhcCCCCCE
Confidence            7999999998753 34434 32 3688764 66654221 100              00100113478999996  5799


Q ss_pred             EEEecCCC
Q 024297          229 VVCCLSLN  236 (269)
Q Consensus       229 vv~~lp~t  236 (269)
                      |+++.|..
T Consensus        68 V~I~tp~~   75 (344)
T PRK10206         68 VVVCTHAD   75 (344)
T ss_pred             EEEeCCch
Confidence            99998843

>PLN02427 UDP-apiose/xylose synthase

Probab=93.61  E-value=0.16  Score=47.20  Aligned_cols=85  Identities=16%  Similarity=0.100  Sum_probs=50.9

Q ss_pred             ccccccCCEEEEEe-cCchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh
Q 024297          147 TGETLLGKTVFILG-FGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS  224 (269)
Q Consensus       147 ~~~~l~g~~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  224 (269)
                      .|+.+..++|.|.| .|-||+.+++.|... |.+|++++++..+.......  ......+.+.-..........+.++++
T Consensus         8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~--~~~~~~~~~~~~~~Dl~d~~~l~~~~~   85 (386)
T PLN02427          8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEP--DTVPWSGRIQFHRINIKHDSRLEGLIK   85 (386)
T ss_pred             CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhcc--ccccCCCCeEEEEcCCCChHHHHHHhh
Confidence            35677888999999 599999999999987 69999999764321100000  000000000000111113345778888


Q ss_pred             hCCEEEEec
Q 024297          225 KADVVVCCL  233 (269)
Q Consensus       225 ~aDvvv~~l  233 (269)
                      ++|+|+-+.
T Consensus        86 ~~d~ViHlA   94 (386)
T PLN02427         86 MADLTINLA   94 (386)
T ss_pred             cCCEEEEcc
Confidence            999877665

>PRK05993 short chain dehydrogenase; Provisional

Probab=93.58  E-value=0.093  Score=46.44  Aligned_cols=37  Identities=27%  Similarity=0.421  Sum_probs=32.6

Q ss_pred             cCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       152 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .++++.|.|. |.||+++|+.|...|++|++.+|+...
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~   40 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEED   40 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            3678999997 999999999999999999999987543

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=93.57  E-value=0.15  Score=44.46  Aligned_cols=39  Identities=23%  Similarity=0.423  Sum_probs=34.6

Q ss_pred             cccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .+.+|++.|.| .|.||+++++.|...|++|+..+++...
T Consensus         6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~   45 (266)
T PRK06171          6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGD   45 (266)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            47899999999 6899999999999999999999887544

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=93.53  E-value=0.16  Score=45.78  Aligned_cols=96  Identities=22%  Similarity=0.274  Sum_probs=58.4

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      -.|.+|.|+|.|.+|+.+++.++.+|++|++++++..+..... .       -| ........ ............|+++
T Consensus       161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~-~-------~g-~~~~~~~~-~~~~~~~~~~~~d~vi  230 (330)
T cd08245         161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELAR-K-------LG-ADEVVDSG-AELDEQAAAGGADVIL  230 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-H-------hC-CcEEeccC-CcchHHhccCCCCEEE
Confidence            4568999999999999999999999999999987654421100 0       00 00011100 0011111123579888


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      .++... .    ...+.+. .|+++..+|+++
T Consensus       231 ~~~~~~-~----~~~~~~~-~l~~~G~~i~~~  256 (330)
T cd08245         231 VTVVSG-A----AAEAALG-GLRRGGRIVLVG  256 (330)
T ss_pred             ECCCcH-H----HHHHHHH-hcccCCEEEEEC
Confidence            776421 1    2244677 899998888876

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PLN02240 UDP-glucose 4-epimerase

Probab=93.52  E-value=0.14  Score=46.73  Aligned_cols=37  Identities=27%  Similarity=0.424  Sum_probs=32.8

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      ++.+++|.|.|. |.+|+.+++.|...|++|+++++..
T Consensus         2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~   39 (352)
T PLN02240          2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLD   39 (352)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCC
Confidence            467899999985 9999999999999999999998654

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=93.52  E-value=0.2  Score=46.18  Aligned_cols=38  Identities=32%  Similarity=0.474  Sum_probs=33.7

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  188 (269)
                      -.|.+|.|+|.|.+|+.+++.++.+|+ +|++++++..+
T Consensus       186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~  224 (369)
T cd08301         186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSK  224 (369)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence            358899999999999999999999999 79999876544

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK08324 short chain dehydrogenase; Validated

Probab=93.51  E-value=0.092  Score=52.97  Aligned_cols=41  Identities=29%  Similarity=0.410  Sum_probs=36.0

Q ss_pred             cccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       148 ~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ...+.|+++.|.| .|.||+.+++.|...|++|++++++...
T Consensus       417 ~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~  458 (681)
T PRK08324        417 PKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEA  458 (681)
T ss_pred             CcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHH
Confidence            3457899999999 5999999999999999999999987643

>PRK08264 short chain dehydrogenase; Validated

Probab=93.50  E-value=0.14  Score=43.79  Aligned_cols=39  Identities=31%  Similarity=0.430  Sum_probs=34.3

Q ss_pred             cccCCEEEEEe-cCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297          150 TLLGKTVFILG-FGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  188 (269)
                      ++.++++.|+| .|.+|+++|+.|...|+ +|+.++|+..+
T Consensus         3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~   43 (238)
T PRK08264          3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPES   43 (238)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhh
Confidence            36788999999 59999999999999999 99999987644

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=93.44  E-value=0.23  Score=44.78  Aligned_cols=83  Identities=20%  Similarity=0.089  Sum_probs=50.4

Q ss_pred             ccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       151 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      ..|++|.|.| .|-||+.+++.|...|.+|.+..|+..+....... ....-....+.-...+......++++++.+|+|
T Consensus         3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v   81 (322)
T PLN02986          3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHL-LALDGAKERLKLFKADLLEESSFEQAIEGCDAV   81 (322)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHH-HhccCCCCceEEEecCCCCcchHHHHHhCCCEE
Confidence            3578999999 69999999999999999999877765431100000 000000000011111122345688889999988


Q ss_pred             EEecC
Q 024297          230 VCCLS  234 (269)
Q Consensus       230 v~~lp  234 (269)
                      +.+..
T Consensus        82 ih~A~   86 (322)
T PLN02986         82 FHTAS   86 (322)
T ss_pred             EEeCC
Confidence            87764

>PRK06182 short chain dehydrogenase; Validated

Probab=93.44  E-value=0.14  Score=44.97  Aligned_cols=36  Identities=25%  Similarity=0.356  Sum_probs=32.1

Q ss_pred             cCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       152 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      .++++.|.|. |.||+++++.|...|++|++.+|+.+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~   38 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVD   38 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4789999994 89999999999999999999998754

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=93.43  E-value=0.083  Score=50.05  Aligned_cols=31  Identities=23%  Similarity=0.370  Sum_probs=27.4

Q ss_pred             CEEEEEecCchHHHHHHHhcc-CCCEEEEEcC
Q 024297          154 KTVFILGFGNIGVELAKRLRP-FGVKIIATKR  184 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~-~G~~V~~~~~  184 (269)
                      .+|||.|||+||+.+++.+.. ++++|++++.
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINd  117 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVND  117 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEecC
Confidence            499999999999999999875 8999998653

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=93.38  E-value=0.057  Score=46.97  Aligned_cols=37  Identities=22%  Similarity=0.263  Sum_probs=33.3

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .=+.|+|+|.|.||..+||.....|.+|..+|++.+.
T Consensus        10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~a   46 (298)
T KOG2304|consen   10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDA   46 (298)
T ss_pred             cccceEEEcccccchhHHHHHHhcCCceEEecCCHHH
Confidence            3468999999999999999999999999999987653

>PRK12828 short chain dehydrogenase; Provisional

Probab=93.37  E-value=0.098  Score=44.49  Aligned_cols=39  Identities=33%  Similarity=0.394  Sum_probs=34.5

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .+.++++.|.|. |.||+.+++.|...|++|++++|+..+
T Consensus         4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~   43 (239)
T PRK12828          4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAP   43 (239)
T ss_pred             CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHh
Confidence            367899999994 999999999999999999999987644

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=93.28  E-value=0.51  Score=46.21  Aligned_cols=209  Identities=18%  Similarity=0.114  Sum_probs=108.0

Q ss_pred             CCCcceEEEeCCCCCCchhhHHHHHhcCCCeEEe-eCCCCChhhhcCCceEE-EEeCCCCCHHHHhcC-CCceEEEEccc
Q 024297            9 DKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVD-VVPISDVPDVIANYHLC-VVKTMRLDSNCISRA-NQMKLIMQFGV   85 (269)
Q Consensus         9 ~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dv~-i~~~~~~~~~~l~~~-~~Lk~I~~~~a   85 (269)
                      ..+.+++++.+.- .....++++..+.- .+... ..+.+. ...-.....+ +.+... -++++++. .+.-+|+.+++
T Consensus       113 ~~~~~r~lIiGAG-~ag~~l~r~~~~~~-~~~pV~fiDdd~-~~~g~~i~Gv~V~g~~~-i~~~v~~~~~~~iiiAips~  188 (588)
T COG1086         113 KDNRIRLLIIGAG-SAGDLLLRALRRDP-EYTPVAFLDDDP-DLTGMKIRGVPVLGRIE-IERVVEELGIQLILIAIPSA  188 (588)
T ss_pred             ccCCCceEEEcCc-hHHHHHHHHHHhCC-CcceEEEECCCh-hhcCCEEeceeeechhH-HHHHHHHcCCceEEEecCCC
Confidence            4467888888874 44444455554433 33322 333332 1111122211 222222 45555553 35556666666


Q ss_pred             cCCcc--chhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCC--CCccccccCCEEEEEe-
Q 024297           86 GLEGV--DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPTGETLLGKTVFILG-  160 (269)
Q Consensus        86 G~d~i--d~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~--~~~~~~l~g~~vgIiG-  160 (269)
                      +-+..  -+..+.+.|+.+--.|..        .+...  ...-+|.+.--+-.-|...-.  ...+..+.||+|.|-| 
T Consensus       189 ~~~~~~~i~~~l~~~~~~v~~lP~~--------~~l~~--~~~~lreI~ieDLLgR~pV~~d~~~i~~~~~gK~vLVTGa  258 (588)
T COG1086         189 SQEERRRILLRLARTGIAVRILPQL--------TDLKD--LNGQLREIEIEDLLGRPPVALDTELIGAMLTGKTVLVTGG  258 (588)
T ss_pred             CHHHHHHHHHHHHhcCCcEEecCcH--------HHHHH--hccccccCCHHHHhCCCCCCCCHHHHHhHcCCCEEEEeCC
Confidence            55431  256678888888877653        33332  222244432211111111100  1135678999999998 


Q ss_pred             cCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh--CCEEEEe
Q 024297          161 FGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVVCC  232 (269)
Q Consensus       161 ~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDvvv~~  232 (269)
                      .|+||+++++.+..++. +++.++++..+-.. ..+--.-.+++..+.....+..+.+.+.+++.+  .|+|.=+
T Consensus       259 gGSiGsel~~qil~~~p~~i~l~~~~E~~~~~-i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~VfHA  332 (588)
T COG1086         259 GGSIGSELCRQILKFNPKEIILFSRDEYKLYL-IDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIVFHA  332 (588)
T ss_pred             CCcHHHHHHHHHHhcCCCEEEEecCchHHHHH-HHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceEEEh
Confidence            68999999999999998 69999886544111 100000000111111122222244568888888  8988754

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.27  E-value=0.11  Score=49.51  Aligned_cols=35  Identities=14%  Similarity=0.282  Sum_probs=31.8

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      ++-+|+|+|+|.+|.++|+.|+..|++|.++|...
T Consensus         5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   39 (448)
T PRK03803          5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE   39 (448)
T ss_pred             cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence            45689999999999999999999999999999754

>PRK06196 oxidoreductase; Provisional

Probab=93.26  E-value=0.077  Score=47.98  Aligned_cols=39  Identities=28%  Similarity=0.430  Sum_probs=34.5

Q ss_pred             ccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       149 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      ..+.|+++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus        22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~   61 (315)
T PRK06196         22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD   61 (315)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3478899999996 88999999999999999999998754

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=93.23  E-value=0.18  Score=47.07  Aligned_cols=36  Identities=33%  Similarity=0.526  Sum_probs=32.2

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      ..++|+|||.|..|+.+++.++.+|++|+.++.++.
T Consensus        11 ~~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~   46 (395)
T PRK09288         11 SATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYAN   46 (395)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            456899999999999999999999999999997654

>PRK06349 homoserine dehydrogenase; Provisional

Probab=93.22  E-value=0.13  Score=49.05  Aligned_cols=66  Identities=23%  Similarity=0.243  Sum_probs=41.2

Q ss_pred             CEEEEEecCchHHHHHHHhccC----------CCEEEE-EcCCCCCccccccccchhhhccccccccccccCCCCCHHHH
Q 024297          154 KTVFILGFGNIGVELAKRLRPF----------GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  222 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~----------G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  222 (269)
                      -+|||+|+|.||+.+++.+...          +.+|.+ ++++..+... .              .. .......+++++
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~-~--------------~~-~~~~~~~d~~~l   67 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRG-V--------------DL-PGILLTTDPEEL   67 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccC-C--------------CC-cccceeCCHHHH
Confidence            4799999999999998877432          456444 4554433110 0              00 001123678898


Q ss_pred             Hh--hCCEEEEecCC
Q 024297          223 AS--KADVVVCCLSL  235 (269)
Q Consensus       223 l~--~aDvvv~~lp~  235 (269)
                      +.  +.|+|+.+.+.
T Consensus        68 l~d~~iDvVve~tg~   82 (426)
T PRK06349         68 VNDPDIDIVVELMGG   82 (426)
T ss_pred             hhCCCCCEEEECCCC
Confidence            86  57999988763

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=93.20  E-value=0.063  Score=49.54  Aligned_cols=96  Identities=11%  Similarity=0.109  Sum_probs=63.0

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH---HhhCCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF---ASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~aDvvv  230 (269)
                      ..+|+||++-|||.++-.....|+.|.+|+|+.++...-        +.|.  .. -.......+++++   ++.-.+|+
T Consensus         7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~f--------lane--ak-~~~i~ga~S~ed~v~klk~PR~ii   75 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEF--------LANE--AK-GTKIIGAYSLEDFVSKLKKPRVII   75 (487)
T ss_pred             cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHH--------HHHh--hc-CCcccCCCCHHHHHHhcCCCcEEE
Confidence            468999999999999999999999999999988763110        0010  00 0001123455555   45667777


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +.+-.-.-...+|.+ ... .|.+|-++|+-|
T Consensus        76 llvkAG~pVD~~I~~-L~p-~LekgDiIIDGG  105 (487)
T KOG2653|consen   76 LLVKAGAPVDQFIEE-LVP-YLEKGDIIIDGG  105 (487)
T ss_pred             EEeeCCCcHHHHHHH-HHh-hcCCCCEEEeCC
Confidence            777655444555544 666 788888888754

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=93.18  E-value=0.13  Score=46.96  Aligned_cols=34  Identities=15%  Similarity=0.361  Sum_probs=28.5

Q ss_pred             EEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGV--KIIATKRSWAS  188 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~  188 (269)
                      ||+|||.|.+|..+|..|...|.  ++..+|.+.+.
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~   36 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGV   36 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcch
Confidence            68999999999999998876554  79999986543

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=93.12  E-value=0.23  Score=45.80  Aligned_cols=38  Identities=24%  Similarity=0.365  Sum_probs=33.3

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  188 (269)
                      ..|.+|.|+|.|.+|..+++.++.+|+ +|++++++..+
T Consensus       183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~  221 (365)
T cd08277         183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDK  221 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHH
Confidence            457899999999999999999999999 79998876543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=93.07  E-value=0.087  Score=42.23  Aligned_cols=32  Identities=19%  Similarity=0.343  Sum_probs=27.6

Q ss_pred             EEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       156 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      +.|+|.|.+++++++.++.+|++|+++|+.++
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            46999999999999999999999999997654

>PRK14851 hypothetical protein; Provisional

Probab=93.07  E-value=0.093  Score=52.88  Aligned_cols=42  Identities=19%  Similarity=0.197  Sum_probs=34.9

Q ss_pred             CCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcC
Q 024297          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKR  184 (269)
Q Consensus       143 w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~  184 (269)
                      |.......|++++|+|+|+|.+|..+++.|...|. +++.+|.
T Consensus        33 ~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~   75 (679)
T PRK14851         33 FTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADF   75 (679)
T ss_pred             cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcC
Confidence            33333467999999999999999999999999998 6887774

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=93.03  E-value=0.14  Score=46.74  Aligned_cols=79  Identities=19%  Similarity=0.172  Sum_probs=48.1

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCC--CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      +.|++|.|.|. |.||+.+++.|.+.|  .+|++++++..........     .....+.-...+.....++.+++.+.|
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~-----~~~~~~~~v~~Dl~d~~~l~~~~~~iD   76 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQK-----FPAPCLRFFIGDVRDKERLTRALRGVD   76 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHH-----hCCCcEEEEEccCCCHHHHHHHHhcCC
Confidence            46899999995 999999999999876  7899998764321000000     000000001111123346778888899


Q ss_pred             EEEEecC
Q 024297          228 VVVCCLS  234 (269)
Q Consensus       228 vvv~~lp  234 (269)
                      +|+.+..
T Consensus        77 ~Vih~Ag   83 (324)
T TIGR03589        77 YVVHAAA   83 (324)
T ss_pred             EEEECcc
Confidence            9887653

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=93.02  E-value=0.25  Score=43.98  Aligned_cols=71  Identities=23%  Similarity=0.258  Sum_probs=41.8

Q ss_pred             EEEEEe-cCchHHHHHHHhcc-CCCEEEE-EcCCCCCcc-ccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          155 TVFILG-FGNIGVELAKRLRP-FGVKIIA-TKRSWASHS-QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       155 ~vgIiG-~G~iG~~~a~~l~~-~G~~V~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      +|+|+| +|.||+.+++.+.. -++++.+ +++...... ...      +...+...   .......+++++...+|+|+
T Consensus         3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~------~~~~~~~~---~gv~~~~d~~~l~~~~DvVI   73 (266)
T TIGR00036         3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDA------GELAGIGK---VGVPVTDDLEAVETDPDVLI   73 (266)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCH------HHhcCcCc---CCceeeCCHHHhcCCCCEEE
Confidence            799999 79999999999885 5888665 553322110 000      00000000   00112367777755789999


Q ss_pred             EecC
Q 024297          231 CCLS  234 (269)
Q Consensus       231 ~~lp  234 (269)
                      .+.|
T Consensus        74 dfT~   77 (266)
T TIGR00036        74 DFTT   77 (266)
T ss_pred             ECCC
Confidence            8875

>PRK06197 short chain dehydrogenase; Provisional

Probab=93.01  E-value=0.11  Score=46.75  Aligned_cols=47  Identities=19%  Similarity=0.259  Sum_probs=39.0

Q ss_pred             CCCCCCccccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          141 KKLGVPTGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       141 ~~w~~~~~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      +.|......++.||++.|.|. |.||+++|+.|...|++|++++|+..
T Consensus         4 ~~~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~   51 (306)
T PRK06197          4 TKWTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLD   51 (306)
T ss_pred             CCCCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            456544446789999999995 89999999999999999999988654

>PRK10537 voltage-gated potassium channel; Provisional

Probab=93.00  E-value=0.1  Score=49.16  Aligned_cols=33  Identities=15%  Similarity=0.171  Sum_probs=29.5

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCC
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  185 (269)
                      ...+.|+|+|.+|+.+++.|+..|.+|++++..
T Consensus       240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d  272 (393)
T PRK10537        240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPL  272 (393)
T ss_pred             CCeEEEECCChHHHHHHHHHHHCCCCEEEEECc
Confidence            567889999999999999999999998888854

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=92.99  E-value=0.16  Score=45.05  Aligned_cols=83  Identities=13%  Similarity=0.133  Sum_probs=60.8

Q ss_pred             HHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEEecCCCccccCc
Q 024297          165 GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTVKL  242 (269)
Q Consensus       165 G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~~lp~t~~t~~l  242 (269)
                      |..+|-.+...|.+|+..+++.+-..+..             .....+.+  -.++-.+..+.+.+.++..|.-..|-++
T Consensus        33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~-------------w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~I   99 (340)
T COG4007          33 GARMAIEFAEAGHDVVLAEPNRDIMDDEH-------------WKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGI   99 (340)
T ss_pred             chHHHHHHHHcCCcEEeecCCccccCHHH-------------HHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHH
Confidence            55677888888999999998876432210             12223333  2245568899999999999998888887


Q ss_pred             CCHHHHhhhCCCCcEEEEcc
Q 024297          243 CSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       243 i~~~~l~~~mk~ga~lIN~~  262 (269)
                      .. +.+. .++.|+++.|+-
T Consensus       100 ar-ei~~-hvpEgAVicnTC  117 (340)
T COG4007         100 AR-EILE-HVPEGAVICNTC  117 (340)
T ss_pred             HH-HHHh-hCcCCcEecccc
Confidence            54 4888 999999999975

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=92.99  E-value=0.19  Score=49.55  Aligned_cols=46  Identities=24%  Similarity=0.289  Sum_probs=37.4

Q ss_pred             CCCCCCccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          141 KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       141 ~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      ..|..+......|++|.|||.|.+|...|..|+..|++|+++++..
T Consensus       125 ~~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~  170 (564)
T PRK12771        125 NGWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP  170 (564)
T ss_pred             cCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            3454433334679999999999999999999999999999998643

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=92.98  E-value=0.18  Score=45.25  Aligned_cols=60  Identities=25%  Similarity=0.443  Sum_probs=41.7

Q ss_pred             CEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh--hCCEEE
Q 024297          154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADVVV  230 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDvvv  230 (269)
                      ++|.|.|. |-||+.+++.|...| +|+++++....                    ...+..+.+.+.++++  +.|+|+
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~~--------------------~~~Dl~d~~~~~~~~~~~~~D~Vi   59 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHSTD--------------------YCGDFSNPEGVAETVRKIRPDVIV   59 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC-CEEEecccccc--------------------ccCCCCCHHHHHHHHHhcCCCEEE
Confidence            47899996 999999999999999 89998875321                    0001112345667777  479887


Q ss_pred             EecC
Q 024297          231 CCLS  234 (269)
Q Consensus       231 ~~lp  234 (269)
                      -+.-
T Consensus        60 h~Aa   63 (299)
T PRK09987         60 NAAA   63 (299)
T ss_pred             ECCc
Confidence            7654

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=92.96  E-value=0.23  Score=45.69  Aligned_cols=77  Identities=17%  Similarity=0.044  Sum_probs=44.2

Q ss_pred             EEEEEec-CchHHHHHHHhccCCC-------EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          155 TVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       155 ~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +|+|+|. |.+|..+|..|...|.       ++..+|+......... +..+..  +.. ...........+..+.+++|
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g-~~~Dl~--d~~-~~~~~~~~~~~~~~~~~~~a   76 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEG-VVMELM--DCA-FPLLDGVVPTHDPAVAFTDV   76 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccce-eEeehh--ccc-chhcCceeccCChHHHhCCC
Confidence            5899999 9999999998886443       5999998654311100 000000  000 00000000112556889999


Q ss_pred             CEEEEecCC
Q 024297          227 DVVVCCLSL  235 (269)
Q Consensus       227 Dvvv~~lp~  235 (269)
                      |+|+++.-.
T Consensus        77 DiVVitAG~   85 (324)
T TIGR01758        77 DVAILVGAF   85 (324)
T ss_pred             CEEEEcCCC
Confidence            999988643

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=92.95  E-value=0.48  Score=47.52  Aligned_cols=37  Identities=24%  Similarity=0.262  Sum_probs=33.8

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      ..+++|.|||.|..|...|..|+..|++|++|++...
T Consensus       308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~  344 (639)
T PRK12809        308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE  344 (639)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence            4699999999999999999999999999999997653

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=92.95  E-value=0.36  Score=43.11  Aligned_cols=95  Identities=21%  Similarity=0.185  Sum_probs=58.2

Q ss_pred             cCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHh--hC
Q 024297          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--KA  226 (269)
Q Consensus       152 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--~a  226 (269)
                      .|.+|.|.|. |.+|+++++.++++|++|+++..+.++......    +    | ++.......  ....+.++..  ..
T Consensus       139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~----g-~~~~~~~~~~~~~~~i~~~~~~~~~  209 (324)
T cd08292         139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRA----L----G-IGPVVSTEQPGWQDKVREAAGGAPI  209 (324)
T ss_pred             CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHh----c----C-CCEEEcCCCchHHHHHHHHhCCCCC
Confidence            5789999986 999999999999999999888765543211100    0    0 001111000  0012333333  48


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|+-++..     .. ..+.++ .++++..+|.+|
T Consensus       210 d~v~d~~g~-----~~-~~~~~~-~l~~~g~~v~~g  238 (324)
T cd08292         210 SVALDSVGG-----KL-AGELLS-LLGEGGTLVSFG  238 (324)
T ss_pred             cEEEECCCC-----hh-HHHHHH-hhcCCcEEEEEe
Confidence            998877542     12 245677 899999999886

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=92.94  E-value=0.32  Score=44.45  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=28.6

Q ss_pred             CEEEEEecCchHHHHHHHhcc--CCCEEEEEcCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRP--FGVKIIATKRSWA  187 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~--~G~~V~~~~~~~~  187 (269)
                      ++|+|||.|.||+.+|..|..  ++-++..+|....
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~   36 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEE   36 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccc
Confidence            489999999999999998864  4558999998733

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=92.93  E-value=0.11  Score=42.39  Aligned_cols=32  Identities=25%  Similarity=0.320  Sum_probs=27.4

Q ss_pred             EEEEEecCchHHHHHHHhc-cCCCEEEEEcCCC
Q 024297          155 TVFILGFGNIGVELAKRLR-PFGVKIIATKRSW  186 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~  186 (269)
                      +|||-|||+||+.+++.+. .-.++|.+++...
T Consensus         2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~   34 (151)
T PF00044_consen    2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPA   34 (151)
T ss_dssp             EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred             EEEEECCCcccHHHHHhhcccceEEEEEEeccc
Confidence            7999999999999999888 4578988887544

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=92.91  E-value=0.28  Score=43.50  Aligned_cols=96  Identities=23%  Similarity=0.230  Sum_probs=57.8

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCCCccccccccchhhhccccccccccccCCCCC----HHHHHh-
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED----IFEFAS-  224 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~ell~-  224 (269)
                      ..|.+|.|.|.|.+|+.+++.++..|++ |++++++.++.. ...   .+.     .......  ...+    +.++.. 
T Consensus       128 ~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~-~~~---~~g-----~~~~~~~--~~~~~~~~l~~~~~~  196 (312)
T cd08269         128 RAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLA-LAR---ELG-----ATEVVTD--DSEAIVERVRELTGG  196 (312)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH-HHH---HhC-----CceEecC--CCcCHHHHHHHHcCC
Confidence            3578999999999999999999999999 888876543311 000   000     0001110  1122    333332 


Q ss_pred             -hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 -KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 -~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                       ..|+++.+....    .. -...++ .|+++..+++++.
T Consensus       197 ~~vd~vld~~g~~----~~-~~~~~~-~l~~~g~~~~~g~  230 (312)
T cd08269         197 AGADVVIEAVGHQ----WP-LDLAGE-LVAERGRLVIFGY  230 (312)
T ss_pred             CCCCEEEECCCCH----HH-HHHHHH-HhccCCEEEEEcc
Confidence             378888775321    12 233567 8888888888763

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=92.87  E-value=0.2  Score=45.07  Aligned_cols=98  Identities=20%  Similarity=0.142  Sum_probs=59.0

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCCCccccccccchhhhccccccccccccCCCCCHH--HH--Hhh
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF--EF--ASK  225 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--el--l~~  225 (269)
                      ..|.+|.|+|.|.+|+++++.+++.|++ |++++++..+.... .       ..|. ......  ...+..  ..  -..
T Consensus       158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~-~-------~~g~-~~~~~~--~~~~~~~~~~~~~~~  226 (334)
T cd08234         158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELA-K-------KLGA-TETVDP--SREDPEAQKEDNPYG  226 (334)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-H-------HhCC-eEEecC--CCCCHHHHHHhcCCC
Confidence            3578999999999999999999999998 88887764431110 0       0000 000100  001111  11  135


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      .|+++.+.+..     ....+.++ .|+++..+|.++...
T Consensus       227 vd~v~~~~~~~-----~~~~~~~~-~l~~~G~~v~~g~~~  260 (334)
T cd08234         227 FDVVIEATGVP-----KTLEQAIE-YARRGGTVLVFGVYA  260 (334)
T ss_pred             CcEEEECCCCh-----HHHHHHHH-HHhcCCEEEEEecCC
Confidence            79998876521     12244567 888999999887543

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=92.87  E-value=0.25  Score=45.79  Aligned_cols=64  Identities=11%  Similarity=0.162  Sum_probs=45.3

Q ss_pred             CEEEEEecCchHHHHHHHhccC--CCEEEE-EcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCE
Q 024297          154 KTVFILGFGNIGVELAKRLRPF--GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV  228 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~--G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDv  228 (269)
                      .+|||||. .+|+..++.++..  ++++.+ +|++.++. .                .....++  .+.++++++.+.|+
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA-~----------------~~A~~~gi~~y~~~eell~d~Di   65 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERS-R----------------ALAHRLGVPLYCEVEELPDDIDI   65 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHH-H----------------HHHHHhCCCccCCHHHHhcCCCE
Confidence            58999999 6899999888765  578666 45543331 1                1222222  45899999999999


Q ss_pred             EEEecCC
Q 024297          229 VVCCLSL  235 (269)
Q Consensus       229 vv~~lp~  235 (269)
                      +++++|.
T Consensus        66 ~~V~ipt   72 (343)
T TIGR01761        66 ACVVVRS   72 (343)
T ss_pred             EEEEeCC
Confidence            9999984

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=92.83  E-value=0.22  Score=43.94  Aligned_cols=57  Identities=28%  Similarity=0.373  Sum_probs=42.8

Q ss_pred             EEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC--CEEEE
Q 024297          155 TVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA--DVVVC  231 (269)
Q Consensus       155 ~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--Dvvv~  231 (269)
                      +|.|+|. |.||+.+++.|...|.+|++++|+...                    .    ...+++.+++...  |+|+.
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~d--------------------~----~~~~~~~~~~~~~~~d~vi~   56 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQLD--------------------L----TDPEALERLLRAIRPDAVVN   56 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCcccC--------------------C----CCHHHHHHHHHhCCCCEEEE
Confidence            4789995 999999999999999999999875211                    1    0224577777766  99987


Q ss_pred             ecCC
Q 024297          232 CLSL  235 (269)
Q Consensus       232 ~lp~  235 (269)
                      +...
T Consensus        57 ~a~~   60 (287)
T TIGR01214        57 TAAY   60 (287)
T ss_pred             CCcc
Confidence            7653

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=92.83  E-value=0.15  Score=44.13  Aligned_cols=38  Identities=29%  Similarity=0.367  Sum_probs=34.2

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      .+.++++.|.|. |.||+.+++.|...|++|+..+|+..
T Consensus         4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~   42 (262)
T PRK13394          4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQD   42 (262)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChH
Confidence            367899999996 99999999999999999999998764

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.73  E-value=0.16  Score=48.24  Aligned_cols=36  Identities=25%  Similarity=0.321  Sum_probs=32.9

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      +.+++|.|+|+|..|.+.++.|+..|.+|.++|...
T Consensus         4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~   39 (438)
T PRK03806          4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI   39 (438)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            467899999999999999999999999999999654

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=92.70  E-value=0.13  Score=41.09  Aligned_cols=31  Identities=35%  Similarity=0.572  Sum_probs=28.5

Q ss_pred             EEEEEecCchHHHHHHHhccCCC-EEEEEcCC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  185 (269)
                      +|.|+|.|.+|.++++.|...|. +++.+|..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            58999999999999999999999 79999865

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK05854 short chain dehydrogenase; Provisional

Probab=92.66  E-value=0.18  Score=45.63  Aligned_cols=41  Identities=32%  Similarity=0.475  Sum_probs=35.7

Q ss_pred             cccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       148 ~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ..++.||++.|.| .|.||+++|+.|...|++|++.+|+..+
T Consensus         9 ~~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~   50 (313)
T PRK05854          9 VPDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAK   50 (313)
T ss_pred             CcccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            3568999999999 6779999999999999999999987543

>PLN02827 Alcohol dehydrogenase-like

Probab=92.64  E-value=0.3  Score=45.51  Aligned_cols=38  Identities=26%  Similarity=0.448  Sum_probs=32.3

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWAS  188 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~  188 (269)
                      -.|.+|.|+|.|.+|+.+++.++.+|++ |++++++..+
T Consensus       192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~  230 (378)
T PLN02827        192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEK  230 (378)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHH
Confidence            3588999999999999999999999994 8888765443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	269
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		6e-15
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		3e-12
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		8e-11
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		3e-08
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		2e-07
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		2e-07
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		3e-07
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		7e-07
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		8e-07
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		1e-06
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		2e-06
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		1e-05
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		1e-05
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		1e-05
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		2e-05
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		2e-05
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		2e-05
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		2e-05
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		2e-05
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		1e-04
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		2e-04
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		3e-04
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		3e-04
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		8e-04
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		8e-04
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		9e-04
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		9e-04

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 29/190 (15%)
Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           + V  T ++    +  A ++K+I     G + +D+  AT+ GI V ++ G ++    + A
Sbjct: 46  IIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLS---EAVA 102
Query: 118 ELTIYLMLGLLRK----QNEMRMAIEQKKLGVPTG----ETLLGKTVFILGFGNIGVELA 169
           E T+ L++ L+RK       +R    +    + TG    E+L GK V ILG G IG  +A
Sbjct: 103 EFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIA 162
Query: 170 KRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229
           +RL PFGVK+      W+ H +V+ +                 K  + DI E   K+D+V
Sbjct: 163 RRLIPFGVKLY----YWSRHRKVNVEKEL--------------KARYMDIDELLEKSDIV 204
Query: 230 VCCLSLNKQT 239
           +  L L + T
Sbjct: 205 ILALPLTRDT 214

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 74/129 (57%), Gaps = 11/129 (8%)
Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V    ++ ++ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct: 71  LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTP---NGNSLSAA 127
Query: 118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           ELT  +++ L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R+
Sbjct: 128 ELTCGMIMCLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRM 184
Query: 173 RPFGVKIIA 181
           + FG+K I 
Sbjct: 185 QSFGMKTIG 193

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 10/131 (7%)
Query: 55  NYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNA 113
           NY + VV++  ++  + I +  ++K+I + G+GL+ +D   A +  IKV   PG  T   
Sbjct: 46  NYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTD-- 103
Query: 114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGFGNIGVELAK 170
            S  ELTI LM+   RK   M  ++   K G+     G  L GKT+ I+GFG IG ++  
Sbjct: 104 -SAVELTIGLMIAAARK---MYTSMALAKSGIFKKIEGLELAGKTIGIVGFGRIGTKVGI 159
Query: 171 RLRPFGVKIIA 181
                G+K++A
Sbjct: 160 IANAMGMKVLA 170

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 11/129 (8%)
Query: 76  QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMR 135
            +K I  + +G + +D++A    GIKV   P  VT    + AE+ + L+LG  R+  E  
Sbjct: 67  NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVT---VATAEIAMLLLLGSARRAGEGE 123
Query: 136 MAIEQKKLG--VP---TGETLLGKTVFILGFGNIGVELAKRLRPFGVKI--IATKRSWAS 188
             I  +      P    GE L  KT+ I GFG+IG  LAKR + F + I    T R+ +S
Sbjct: 124 KMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA-SS 182
Query: 189 HSQVSCQSS 197
             + S Q++
Sbjct: 183 SDEASYQAT 191

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 5/126 (3%)
Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V     +D+  ++ A ++K++ + GVGL+ VD++AAT  G+ V   P   T N  S A
Sbjct: 47  LLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAP---TSNIHSAA 103
Query: 118 ELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF 175
           E  + L+L   R+      ++ +   K    +G  + GKTV ++G G IG  +A+R+  F
Sbjct: 104 EHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAF 163
Query: 176 GVKIIA 181
           G  ++A
Sbjct: 164 GAYVVA 169

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 5/126 (3%)
Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V     +D+  ++ A ++K++ + GVGL+ VD++AAT  G+ V   P   T N  S A
Sbjct: 48  LLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAP---TSNIHSAA 104
Query: 118 ELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF 175
           E  + L+L   R+      ++ +   K    +G  + GKTV ++G G IG  +A+R+  F
Sbjct: 105 EHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAF 164
Query: 176 GVKIIA 181
           G  ++A
Sbjct: 165 GAYVVA 170

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 74/178 (41%), Gaps = 28/178 (15%)
Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           L +    +   + +I   GVG + VD+  A R  I V   PG +   A   A+L I L L
Sbjct: 83  LSNEWXEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVL---ADDVADLGIALXL 139
Query: 126 GLLRKQNEMRMAIEQKKLG----VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
            +LR+  +    + + +      +P G +  GK + +LG G IG  LA R   FG  +  
Sbjct: 140 AVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSV-- 197
Query: 182 TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT 239
             R W          S L+  + I          H+   + A  +DV+  C++ +  T
Sbjct: 198 --RYW--------NRSTLSGVDWI---------AHQSPVDLARDSDVLAVCVAASAAT 236

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 77  MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM 136
           +K I    VG + +D  AA   GIKV   P DV  +A  CAE+   L+L   R+  E   
Sbjct: 95  LKTIATLSVGYDHIDXAAARSLGIKVLHTP-DVLSDA--CAEIAXLLVLNACRRGYEADR 151
Query: 137 AIEQKKLGV--PT---GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS 190
            +         PT   G  L G+ + I G G IG  +A R R FG+ I    R+  SH+
Sbjct: 152 XVRSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIATRARGFGLAIHYHNRTRLSHA 210

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 14/110 (12%)
Query: 77  MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM 136
           +K+I    VG++ + ++   + GI+V   P  +T    + AEL + L+L   R+  E   
Sbjct: 77  LKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTD---TTAELAVSLLLTTCRRLPE--- 130
Query: 137 AIEQKKLGVPT--------GETLLGKTVFILGFGNIGVELAKRLRPFGVK 178
           AIE+ K G  T        G  L   TV I+G G IG  +A+RL+PFGV+
Sbjct: 131 AIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQ 180

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 14/110 (12%)
Query: 77  MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM 136
           +K+I    VG++ + ++   + GI+V   P  +T    + AEL + L+L   R+  E   
Sbjct: 75  LKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTD---TTAELAVSLLLTTCRRLPE--- 128
Query: 137 AIEQKKLGVPT--------GETLLGKTVFILGFGNIGVELAKRLRPFGVK 178
           AIE+ K G  T        G  L   TV I+G G IG  +A+RL+PFGV+
Sbjct: 129 AIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQ 178

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY 122
           T+ L    + +   +++I++ G G + VDI AA   GI V  IP   +      A+ TI 
Sbjct: 56  TITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIP---SAAVEETADSTIC 112
Query: 123 LMLGLLRKQNEMRMA---------IEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLR 173
            +L L R+   +  A         +EQ +        + G+T+ ++GFG  G  +A R +
Sbjct: 113 HILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAK 172
Query: 174 PFGVKII 180
            FG  +I
Sbjct: 173 AFGFSVI 179

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 27/176 (15%)
Query: 67  DSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLG 126
           D+  I    +++++  F VGL+ VD+      G++V   P  +T +    A+L I L+L 
Sbjct: 78  DAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDD---VADLAIGLILA 134
Query: 127 LLRKQNEMRMAIEQK--KLG-VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           +LR+  E    + +   K G         GK V I+G G IG+ +A+R   F   I    
Sbjct: 135 VLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFS 194
Query: 184 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT 239
           RS   ++  +   S                     + E AS +D++V    L  +T
Sbjct: 195 RSKKPNTNYTYYGS---------------------VVELASNSDILVVACPLTPET 229

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAEL 119
           T+ L    + +   +++I++ G G + +DI +A   GI V  +P    + T ++  C  L
Sbjct: 75  TITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHIL 134
Query: 120 TIYLMLGLLR---KQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 176
            +Y     L    ++     ++EQ +        + G+T+ I+G G +G  +A R + FG
Sbjct: 135 NLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFG 194
Query: 177 VKII 180
             ++
Sbjct: 195 FNVL 198

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 56  YHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAA 114
           +H   +   R+D     +A ++KL++  GVG + +D++   + G K++ +  +VTG N  
Sbjct: 70  FHPAYITKERID-----KAKKLKLVVVAGVGSDHIDLDYINQTGKKISVL--EVTGSNVV 122
Query: 115 SCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT----GETLLGKTVFILGFGNIGVELAK 170
           S AE  +  ML L+R        I      V         + GKT+  +G G IG  + +
Sbjct: 123 SVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLE 182
Query: 171 RLRPFGVK 178
           RL PF  K
Sbjct: 183 RLVPFNPK 190

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 56  YHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAA 114
           +H   +   R+D     +A ++KL++  GVG + +D++   + G K++ +  +VTG N  
Sbjct: 69  FHPAYITKERID-----KAKKLKLVVVAGVGSDHIDLDYINQTGKKISVL--EVTGSNVV 121
Query: 115 SCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT----GETLLGKTVFILGFGNIGVELAK 170
           S AE  +  ML L+R        I      V         + GKT+  +G G IG  + +
Sbjct: 122 SVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLE 181
Query: 171 RLRPFGVK 178
           RL PF  K
Sbjct: 182 RLVPFNPK 189

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAEL 119
           T+ L    + +   +++I++ G G + +DI +A   GI V  +P    + T ++  C  L
Sbjct: 75  TITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHIL 134
Query: 120 TIYLMLGLLR---KQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 176
            +Y     L    ++     ++EQ +        + G+T+ I+G G +G  +A R + FG
Sbjct: 135 NLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFG 194
Query: 177 VKII 180
             ++
Sbjct: 195 FNVL 198

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAEL 119
           T+ L    + +   +++I++ G G + +DI +A   GI V  +P    + T ++  C  L
Sbjct: 72  TITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHIL 131
Query: 120 TIYLMLGLLR---KQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 176
            +Y     L    ++     ++EQ +        + G+T+ I+G G +G  +A R + FG
Sbjct: 132 NLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFG 191
Query: 177 VKII 180
             ++
Sbjct: 192 FNVL 195

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
           ++    I  A ++K+I + GVGL+ +D+ AA   GI+V   P     ++ S AEL + LM
Sbjct: 55  KVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPA---ASSRSVAELAVGLM 111
Query: 125 LGLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
             + RK      +MR  +  KK  +  G  L GKT+ I+GFG IG ++AK     G+ I+
Sbjct: 112 FSVARKIAFADRKMREGVWAKKEAM--GIELEGKTIGIIGFGRIGYQVAKIANALGMNIL 169

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 73  RANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN 132
            A  +K +    VG + +D+ A  + GI+++ +P     + A+ AE  +   L LLR   
Sbjct: 65  HAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPA---YSPAAIAEFALTDTLYLLRNMG 121
Query: 133 EMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           +++  ++    +K G   G+ L  +TV ++G G+IG    K  + FG K+IA
Sbjct: 122 KVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIA 173

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAEL 119
           T+ L    + +   +++I++ G G + +DI +A   GI V  +P    + T ++  C  L
Sbjct: 75  TITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHIL 134
Query: 120 TIYLMLGLLR---KQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 176
            +Y     L    ++     ++EQ +        + G+T+ I+G   +G  +A R + FG
Sbjct: 135 NLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAFG 194
Query: 177 VKII 180
             ++
Sbjct: 195 FNVL 198

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 10/121 (8%)
Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
           +L    +S+  ++KLI    VG + +D++   + GI V  IP     +  S AE T   +
Sbjct: 53  KLTEELLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPA---YSPESVAEHTFAXI 109
Query: 125 LGLLRKQNEMRMAIEQKKLGVPTGETLLGK-----TVFILGFGNIGVELAKRLRPFGVKI 179
           L L+++    R+    KKL       +L +     T+ ++G G IG  +A     FG K+
Sbjct: 110 LTLVKRLK--RIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGLAFGXKV 167
Query: 180 I 180
           +
Sbjct: 168 L 168

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
Query: 84  GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKL 143
           G+G + +D+ AA   G+ VA + G    N  S AE  +  +L L+R        + + + 
Sbjct: 100 GIGSDHIDLQAAAAAGLTVAEVTG---SNVVSVAEDELMRILILMRNFVPGYNQVVKGEW 156
Query: 144 GVP----TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL 199
            V         L GKT+  +G G IG  L +RL+PFG  ++   R   +  ++  ++ A 
Sbjct: 157 NVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMA-PELEKETGAK 215
Query: 200 AVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT 239
            V               ED+ E   K DV+V  + L ++T
Sbjct: 216 FV---------------EDLNEMLPKCDVIVINMPLTEKT 240

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
Query: 84  GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKL 143
           G+G + +D+ AA   G+ VA + G    N  S AE  +  +L L+R        + + + 
Sbjct: 94  GIGSDHIDLQAAAAAGLTVAEVTG---SNVVSVAEDELMRILILMRNFVPGYNQVVKGEW 150
Query: 144 GVP----TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL 199
            V         L GKT+  +G G IG  L +RL+PFG  ++   R   +  ++  ++ A 
Sbjct: 151 NVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMA-PELEKETGAK 209
Query: 200 AVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT 239
            V               ED+ E   K DV+V  + L ++T
Sbjct: 210 FV---------------EDLNEMLPKCDVIVINMPLTEKT 234

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
           I++A  +KL +  G+G + VD+ +A    + VA +      N+ S AE  + ++L L+R 
Sbjct: 108 IAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEV---TYCNSISVAEHVVMMILSLVR- 163
Query: 131 QNEMRMAIEQKKLG------VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184
            N +      +K G      V     L    V  +  G IG+ + +RL PF V +  T R
Sbjct: 164 -NYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDR 222

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           L +  I++A ++KL +  G+G + VD+ AA    I VA +      N+ S AE  + ++L
Sbjct: 103 LTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEV---TYCNSNSVAEHVVMMVL 159
Query: 126 GLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           GL+R      +  R         V     + G  V  +  G IG+ + + L PF + +  
Sbjct: 160 GLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHY 219
Query: 182 TKR 184
           T R
Sbjct: 220 TDR 222

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
           I++A  +KL +  G+G + VD+ +A    + VA +      N+ S AE  + ++L L+R 
Sbjct: 109 IAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEV---TYCNSISVAEHVVMMILSLVR- 164
Query: 131 QNEMRMAIEQKKLG------VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184
            N +      +K G      V     L    V  +  G IG+ + +RL PF V +  T R
Sbjct: 165 -NYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDR 223

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           L +  I++A ++KL +  G+G + VD+ AA    I VA +      N+ S AE  + ++L
Sbjct: 104 LTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEV---TYCNSNSVAEHVVMMVL 160
Query: 126 GLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           GL+R      +  R         V     + G  V  +  G IG+ + + L PF + +  
Sbjct: 161 GLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHY 220
Query: 182 TKR 184
           T R
Sbjct: 221 TDR 223

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	5e-29
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	2e-28
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	4e-28
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	9e-28
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	1e-26
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	6e-26
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	7e-26
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	1e-25
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	1e-25
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	1e-25
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	2e-25
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	2e-25
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	2e-25
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	1e-24
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	1e-24
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	1e-24
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	1e-24
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	2e-24
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	4e-24
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	6e-24
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	8e-24
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	2e-23
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	4e-23
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	5e-23
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	5e-23
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	6e-23
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	1e-22
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	2e-22
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	2e-20
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	2e-19
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	3e-18
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	6e-17
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	2e-09
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	9e-06
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	1e-05
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	2e-05
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	4e-05
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	6e-05
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	1e-04
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	1e-04
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	2e-04
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	2e-04
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	2e-04
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	3e-04
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	3e-04
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	4e-04
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	4e-04
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	8e-04

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  111 bits (279), Expect = 5e-29
 Identities = 42/232 (18%), Positives = 75/232 (32%), Gaps = 27/232 (11%)

Query: 13  TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCIS 72
           + VL      P      +    ++       V  +D   +             L +    
Sbjct: 2   SLVLMAQATKPEQLQQLQTTYPDWTFKDAAAVTAADYDQIEV----MYGNHPLLKTILAR 57

Query: 73  RANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN 132
             NQ+K +     G++ + + A    G+ VA   G    +A + +E  +  ML ++R  +
Sbjct: 58  PTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSG---IHADAISESVLAAMLSVVRGYH 114

Query: 133 EMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS 190
              +     +      T  TL G+ + I G G IG  LA +    G+ +I    +     
Sbjct: 115 AAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTT----- 169

Query: 191 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKL 242
                        G   D   E        +  + A+ +V  L L   T  L
Sbjct: 170 -------------GHPADHFHETVAFTATADALATANFIVNALPLTPTTHHL 208

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  110 bits (277), Expect = 2e-28
 Identities = 53/218 (24%), Positives = 88/218 (40%), Gaps = 35/218 (16%)

Query: 39  IQVDVVPISDVPD-----VIANYHLCVVKTM---RLDSNCISRANQMKLIMQFGVGLEGV 90
            Q  V    + PD      I + H+ +        + +  I +A  +KL++  G+G + +
Sbjct: 41  HQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHI 100

Query: 91  DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ----KKLGVP 146
           D+ AA   G+ VA + G    N  S AE  +  +L L+R        + +          
Sbjct: 101 DLQAAAAAGLTVAEVTG---SNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAY 157

Query: 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII 206
               L GKT+  +G G IG  L +RL+PFG  ++   R   +                  
Sbjct: 158 RAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMA------------------ 199

Query: 207 DDLVDEKGC--HEDIFEFASKADVVVCCLSLNKQTVKL 242
            +L  E G    ED+ E   K DV+V  + L ++T  +
Sbjct: 200 PELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGM 237

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  108 bits (272), Expect = 4e-28
 Identities = 40/203 (19%), Positives = 74/203 (36%), Gaps = 35/203 (17%)

Query: 42  DVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIK 101
            +V   D+ +V A          R+ +  +++  ++K I     GL+ +   +     + 
Sbjct: 22  KIVRGGDLGNVEA------ALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPP-HVT 74

Query: 102 VARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFIL 159
           VA   G    NA + AE  + L+L   ++  +    +++      V     + G+ V +L
Sbjct: 75  VAGNAG---SNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPL-IQGEKVAVL 130

Query: 160 GFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI 219
           G G IG  + K L   G ++    R+          S         +++           
Sbjct: 131 GLGEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNS---------LEEA---------- 171

Query: 220 FEFASKADVVVCCLSLNKQTVKL 242
                +A   VC L LNK T  L
Sbjct: 172 ---LREARAAVCALPLNKHTRGL 191

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  108 bits (273), Expect = 9e-28
 Identities = 43/215 (20%), Positives = 75/215 (34%), Gaps = 35/215 (16%)

Query: 39  IQVDVVPISDVPD-----VIANYHLCVVKTM---RLDSNCISRANQMKLIMQFGVGLEGV 90
             + V    D PD      + +  + + +      L    I++A  +KL +  G+G + V
Sbjct: 68  HTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHV 127

Query: 91  DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ----KKLGVP 146
           D+ +A    + VA +      N+ S AE  + ++L L+R          +        V 
Sbjct: 128 DLQSAIDRNVTVAEVTY---CNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVS 184

Query: 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII 206
               L    V  +  G IG+ + +RL PF V +  T R                      
Sbjct: 185 HAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLP------------------ 226

Query: 207 DDLVDEKGC--HEDIFEFASKADVVVCCLSLNKQT 239
           + +  E     H    +     DVV     L+ +T
Sbjct: 227 ESVEKELNLTWHATREDMYPVCDVVTLNCPLHPET 261

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  104 bits (263), Expect = 1e-26
 Identities = 41/204 (20%), Positives = 82/204 (40%), Gaps = 31/204 (15%)

Query: 51  DVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV 109
             +     L  + + R+D      A +++++  + VG + +DI  AT+ GI V   P  +
Sbjct: 41  KKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVL 100

Query: 110 TGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT---------GETLLGKTVFILG 160
           T    + A+L   L+L   R   +    +   +              G  + GKT+ I+G
Sbjct: 101 T---DATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIG 157

Query: 161 FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF 220
            G IG  +AKR + F ++I+   R+         +   +  +              + + 
Sbjct: 158 LGRIGQAIAKRAKGFNMRILYYSRT---------RKEEVERELNAE---------FKPLE 199

Query: 221 EFASKADVVVCCLSLNKQTVKLCS 244
           +   ++D VV  + L ++T  L +
Sbjct: 200 DLLRESDFVVLAVPLTRETYHLIN 223

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  103 bits (259), Expect = 6e-26
 Identities = 45/218 (20%), Positives = 79/218 (36%), Gaps = 32/218 (14%)

Query: 39  IQVDVVPISDVPD-----VIANYHLCVVKTM---RLDSNCISRANQMKLIMQFGVGLEGV 90
            ++      +  +      I +  + +        +    I +A ++KL++  GVG + +
Sbjct: 39  HELITTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHI 98

Query: 91  DINAATRCG--IKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ----KKLG 144
           D++   + G  I V  + G    N  S AE  +  ML L+R        I          
Sbjct: 99  DLDYINQTGKKISVLEVTG---SNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAI 155

Query: 145 VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNG 204
                 + GKT+  +G G IG  + +RL PF  K +        +            K G
Sbjct: 156 AKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELL-------YYDYQALPKDAEEKVG 208

Query: 205 IIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKL 242
                   +   E+I E  ++AD+V     L+  T  L
Sbjct: 209 A------RR--VENIEELVAQADIVTVNAPLHAGTKGL 238

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  103 bits (258), Expect = 7e-26
 Identities = 52/181 (28%), Positives = 93/181 (51%), Gaps = 20/181 (11%)

Query: 10  KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVVKTM-R 65
            N+ +VL             ++ LQ+   +QV         ++   + +    +V++  +
Sbjct: 24  ANLRKVLISDS----LDPCCRKILQD-GGLQVVEKQNLSKEELIAELQDCEGLIVRSATK 78

Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           + ++ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S AELT  +++
Sbjct: 79  VTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPN---GNSLSAAELTCGMIM 135

Query: 126 GLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
            L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R++ FG+K I
Sbjct: 136 CLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRMQSFGMKTI 192

Query: 181 A 181
            
Sbjct: 193 G 193

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  101 bits (255), Expect = 1e-25
 Identities = 51/200 (25%), Positives = 85/200 (42%), Gaps = 32/200 (16%)

Query: 51  DVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV 109
             +     L      R+D+  + RA  +K+I  + VG++ VD+ AA   GI+V   PG +
Sbjct: 39  KRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVL 98

Query: 110 TGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPT---GETLLGKTVFILGFGNI 164
           T    + A+LT+ L+L + R+  E              P    G  L G T+ ++G G I
Sbjct: 99  T---EATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRI 155

Query: 165 GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS 224
           G  +AKR   FG++++   R+             L      +++L+ E            
Sbjct: 156 GQAVAKRALAFGMRVVYHART----------PKPLPYPFLSLEELLKE------------ 193

Query: 225 KADVVVCCLSLNKQTVKLCS 244
            ADVV     L  +T +L +
Sbjct: 194 -ADVVSLHTPLTPETHRLLN 212

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  101 bits (255), Expect = 1e-25
 Identities = 50/201 (24%), Positives = 79/201 (39%), Gaps = 26/201 (12%)

Query: 51  DVIANYH-LCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGD 108
           +   +   L +    +     I R    +K I  + +G + +D++A    GIKV   P  
Sbjct: 40  ETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHG 99

Query: 109 VTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPT---GETLLGKTVFILGFGN 163
           VT    + AE+ + L+LG  R+  E    I  +      P    GE L  KT+ I GFG+
Sbjct: 100 VT---VATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGS 156

Query: 164 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA 223
           IG  LAKR + F + I       AS S    ++S  A  +  +D L+             
Sbjct: 157 IGQALAKRAQGFDMDIDYFDTHRASSSD---EASYQATFHDSLDSLL------------- 200

Query: 224 SKADVVVCCLSLNKQTVKLCS 244
           S +           +T    +
Sbjct: 201 SVSQFFSLNAPSTPETRYFFN 221

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  101 bits (254), Expect = 2e-25
 Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 22/181 (12%)

Query: 10  KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVV--KTM 64
               + L   P          + L+    IQVD    +   ++ ++I NY + VV  +T 
Sbjct: 3   IYTVKALITDP----IDEILIKTLRE-KGIQVDYMPEISKEELLNIIGNYDIIVVRSRT- 56

Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
           ++  + I +  ++K+I + G+GL+ +D   A +  IKV   PG    +  S  ELTI LM
Sbjct: 57  KVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPG---ASTDSAVELTIGLM 113

Query: 125 LGLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           +   RK        +  I +K  G+   E L GKT+ I+GFG IG ++       G+K++
Sbjct: 114 IAAARKMYTSMALAKSGIFKKIEGL---E-LAGKTIGIVGFGRIGTKVGIIANAMGMKVL 169

Query: 181 A 181
           A
Sbjct: 170 A 170

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  101 bits (255), Expect = 2e-25
 Identities = 56/224 (25%), Positives = 99/224 (44%), Gaps = 35/224 (15%)

Query: 31  EYLQNYPSIQVDVVPISDVP---DVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVG 86
           E L+ Y    V+++          VI  +  + V  T ++    +  A ++K+I     G
Sbjct: 17  EELKKYA--DVEIILYPSGEELKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAG 74

Query: 87  LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK---- 142
            + +D+  AT+ GI V ++ G     + + AE T+ L++ L+RK +     I + +    
Sbjct: 75  YDNIDLEEATKRGIYVTKVSG---LLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESH 131

Query: 143 ----LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSA 198
                G    E+L GK V ILG G IG  +A+RL PFGVK+    R          +   
Sbjct: 132 AKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRH---------RKVN 182

Query: 199 LAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKL 242
           +  +       +D     +++ E   K+D+V+  L L + T  +
Sbjct: 183 VEKELKA--RYMD----IDELLE---KSDIVILALPLTRDTYHI 217

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  100 bits (252), Expect = 2e-25
 Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 20/177 (11%)

Query: 14  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISD---VPDVIANYHLCVVKTM-RLDSN 69
           +VL   P          + L++   ++V      D   + +++ +    +V++  ++   
Sbjct: 5   KVLVAAPLHEK----AIQVLKD-AGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRR 59

Query: 70  CISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR 129
            I  A ++K+I + GVGL+ +D+ AA   GI+V   P     ++ S AEL + LM  + R
Sbjct: 60  VIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPA---ASSRSVAELAVGLMFSVAR 116

Query: 130 KQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           K       +      +K+     G  L GKT+ I+GFG IG ++AK     G+ I+ 
Sbjct: 117 KIAFADRKMREGVWAKKEA---MGIELEGKTIGIIGFGRIGYQVAKIANALGMNILL 170

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score = 98.8 bits (247), Expect = 1e-24
 Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 9/155 (5%)

Query: 36  YPSIQVDVVPISDVPDVIANYHLCVVKTM-----RLDSNCISRANQMKLIMQFGVGLEGV 90
           Y +   D         V+  + L           ++  +      + K+I     G++ +
Sbjct: 4   YVNFPADGHVREIAKTVLDGFDLHWYPDYYDAEAQVIKDRYVLGKRTKMIQAISAGVDHI 63

Query: 91  DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGET 150
           D+N      +  +         + S AE    L+L   +   E    ++           
Sbjct: 64  DVNGIPENVVLCSNAGA----YSISVAEHAFALLLAHAKNILENNELMKAGIFRQSPTTL 119

Query: 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
           L GK + ILG+G IG  +A   + FG+++IA  RS
Sbjct: 120 LYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRS 154

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score = 99.6 bits (249), Expect = 1e-24
 Identities = 40/197 (20%), Positives = 73/197 (37%), Gaps = 25/197 (12%)

Query: 53  IANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG 111
             +   +      R+D++ +    ++++I     G +  D++A T  G+ +  +P     
Sbjct: 43  CRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPD---L 99

Query: 112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PT--GETLLGKTVFILGFGNIGVE 167
                AEL I L +GL R        +   K     P   G  L   TV  LG G IG+ 
Sbjct: 100 LTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLA 159

Query: 168 LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227
           +A RL+ +G  +   +               L ++     +L              + +D
Sbjct: 160 MADRLQGWGATLQYHEAKALDTQ----TEQRLGLRQVACSELF-------------ASSD 202

Query: 228 VVVCCLSLNKQTVKLCS 244
            ++  L LN  T+ L +
Sbjct: 203 FILLALPLNADTLHLVN 219

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =   99 bits (250), Expect = 1e-24
 Identities = 46/193 (23%), Positives = 74/193 (38%), Gaps = 27/193 (13%)

Query: 58  LCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASC 116
           L V  T  + +  I +    +K I    VG + +D+ AA   GIKV   P  ++    +C
Sbjct: 75  LFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLS---DAC 131

Query: 117 AELTIYLMLGLLRKQNE-MRMAIEQK-KLGVPT---GETLLGKTVFILGFGNIGVELAKR 171
           AE+ + L+L   R+  E  RM          PT   G  L G+ + I G G IG  +A R
Sbjct: 132 AEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATR 191

Query: 172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231
            R FG+ I    R     +++S      A+              H+ +      +D+ + 
Sbjct: 192 ARGFGLAIHYHNR-----TRLSHALEEGAIY-------------HDTLDSLLGASDIFLI 233

Query: 232 CLSLNKQTVKLCS 244
                 +      
Sbjct: 234 AAPGRPELKGFLD 246

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  101 bits (253), Expect = 1e-24
 Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 15/154 (9%)

Query: 37  PSIQVDVVP---ISDVPDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGVGLEGVDI 92
             ++V  V       +   +      +V++   +D+  ++ A ++K++ + GVGL+ VD+
Sbjct: 23  DQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDV 82

Query: 93  NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPT 147
           +AAT  G+ V   P     N  S AE  + L+L   R+      ++     ++      +
Sbjct: 83  DAATARGVLVVNAPT---SNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSF---S 136

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           G  + GKTV ++G G IG  +A+R+  FG  ++A
Sbjct: 137 GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVA 170

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score = 98.8 bits (247), Expect = 2e-24
 Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 28/184 (15%)

Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY 122
              L +  + +   + +I   GVG + VD+  A R  I V   PG +       A+L I 
Sbjct: 80  GAGLSNEWMEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLA---DDVADLGIA 136

Query: 123 LMLGLLRKQNE----MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVK 178
           LML +LR+  +    +R         +P G +  GK + +LG G IG  LA R   FG+ 
Sbjct: 137 LMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMS 196

Query: 179 IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ 238
           +    RS  S                       +   H+   + A  +DV+  C++ +  
Sbjct: 197 VRYWNRSTLSGV---------------------DWIAHQSPVDLARDSDVLAVCVAASAA 235

Query: 239 TVKL 242
           T  +
Sbjct: 236 TQNI 239

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score = 98.5 bits (246), Expect = 4e-24
 Identities = 31/156 (19%), Positives = 64/156 (41%), Gaps = 17/156 (10%)

Query: 40  QVDVVPISDVPD----VIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINA 94
            V         +    V+       +  T+ L    + +   +++I++ G G + +DI +
Sbjct: 44  TVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKS 103

Query: 95  ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR---------KQNEMRMAIEQKKLGV 145
           A   GI V  +P     +    A+ T+  +L L R         ++     ++EQ +   
Sbjct: 104 AGDLGIAVCNVPA---ASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVA 160

Query: 146 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
                + G+T+ I+G G +G  +A R + FG  ++ 
Sbjct: 161 SGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLF 196

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score = 97.7 bits (244), Expect = 6e-24
 Identities = 36/210 (17%), Positives = 74/210 (35%), Gaps = 34/210 (16%)

Query: 46  ISDVPDVIANYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVAR 104
             D   +I        ++   +++ IS   + +K+    G G + +D++A    G+  A 
Sbjct: 49  YGDFEAIIKLAVENGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFAN 108

Query: 105 IPGDVTGNAASCAELTIYLMLGLLRKQNE-MRMAIEQK--------KLGVPTGETLLGKT 155
             G       + ++L +YL+L + R  +   R A                 +     G  
Sbjct: 109 SRGAGD---TATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHV 165

Query: 156 VFILGFGNIGVELAKR-LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG 214
           +  +G G I  E+A++ +   G+K++    + A                    +     G
Sbjct: 166 LGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPAD------------------AETEKALG 207

Query: 215 C--HEDIFEFASKADVVVCCLSLNKQTVKL 242
               + + E A ++D V   +   K T  L
Sbjct: 208 AERVDSLEELARRSDCVSVSVPYMKLTHHL 237

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score = 97.2 bits (243), Expect = 8e-24
 Identities = 52/228 (22%), Positives = 90/228 (39%), Gaps = 35/228 (15%)

Query: 31  EYLQNYPSIQVDVVPISDVP-------DVIANYH-LCVVKTMRLDSNCISRAN-QMKLIM 81
             L      +V+    SD P         +A  H L  + +  +D   +  A   +K+I 
Sbjct: 23  VALARAADCEVEQWD-SDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVIS 81

Query: 82  QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK 141
              VG++ + ++   + GI+V   P  +T    + AEL + L+L   R+  E    ++  
Sbjct: 82  TMSVGIDHLALDEIKKRGIRVGYTPDVLT---DTTAELAVSLLLTTCRRLPEAIEEVKNG 138

Query: 142 KLG--VPT---GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQS 196
                 P    G  L   TV I+G G IG  +A+RL+PFGV+       +        ++
Sbjct: 139 GWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFL----YTGRQPRPEEA 194

Query: 197 SALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCS 244
           +    +                  E A+++D +V   SL   T  LC+
Sbjct: 195 AEFQAE-------------FVSTPELAAQSDFIVVACSLTPATEGLCN 229

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score = 95.8 bits (239), Expect = 2e-23
 Identities = 42/183 (22%), Positives = 70/183 (38%), Gaps = 27/183 (14%)

Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY 122
               D+  I    +++++  F VGL+ VD+      G++V   P  +T      A+L I 
Sbjct: 74  NAGADAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLT---DDVADLAIG 130

Query: 123 LMLGLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI 179
           L+L +LR+  E    + +   K           GK V I+G G IG+ +A+R   F   I
Sbjct: 131 LILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPI 190

Query: 180 IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT 239
               RS                              +  + E AS +D++V    L  +T
Sbjct: 191 SYFSRS--KKPNT-------------------NYTYYGSVVELASNSDILVVACPLTPET 229

Query: 240 VKL 242
             +
Sbjct: 230 THI 232

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score = 95.4 bits (238), Expect = 4e-23
 Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 16/170 (9%)

Query: 25  SHNYTKEYLQNY-PSIQVDVVPISDVP------DVIANYH-LCVVKTMRLDSNCISRANQ 76
             +      +        D+  + D        ++ A +  + +      +   +    +
Sbjct: 8   VRDVELPIFEACNKEFGYDIKCVPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKK 67

Query: 77  M--KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM 134
           +  K I+    G + +D   A   G  +A +P     +  + AEL +   + LLR     
Sbjct: 68  LGVKYILTRTAGTDHIDKEYAKELGFPMAFVPR---YSPNAIAELAVTQAMMLLRHTAYT 124

Query: 135 RMAIEQKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
                +K          + +   TV ++G G IG   A+     G  +I 
Sbjct: 125 TSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIG 174

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score = 95.4 bits (238), Expect = 5e-23
 Identities = 28/162 (17%), Positives = 63/162 (38%), Gaps = 11/162 (6%)

Query: 28  YTKEYLQNYPSIQVDVVPISDVPDVIANYH----LCVVKTMRLDSNCISRANQM--KLIM 81
           + KE+   +  ++V+       P+ +A       + V + +   +  +          + 
Sbjct: 16  FLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMS 75

Query: 82  QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK 141
              VG++ +D+  A   G ++  +P     +  + AE        +LR+   M   + + 
Sbjct: 76  LRNVGVDNIDMAKAKELGFQITNVPV---YSPNAIAEHAAIQAARILRQDKAMDEKVARH 132

Query: 142 KLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
            L      G  +  + V ++G G+IG    + +  FG K+I 
Sbjct: 133 DLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVIT 174

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score = 95.8 bits (239), Expect = 5e-23
 Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 18/162 (11%)

Query: 31  EYLQNYPSIQVDVVPISDVPD----VIANYHLCVV--KTMRLDSNCISRANQMKLIMQFG 84
           E L+      ++    +   +     I + H   +  +T  L  + I+ A ++  I  F 
Sbjct: 19  ESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTH-LTEDVINAAEKLVAIGAFA 77

Query: 85  VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR----KQNEMRMAI-E 139
           +G   VD++AA + GI V   P     N  S AEL I  +L LLR       +    +  
Sbjct: 78  IGTNQVDLDAAAKRGIPVFNAPF---SNTRSVAELVIGELLLLLRGVPEANAKAHRGVGN 134

Query: 140 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           +   G        GK + I+G+G+IG +L       G+ +  
Sbjct: 135 KLAAG---SFEARGKKLGIIGYGHIGTQLGILAESLGMYVYF 173

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score = 95.0 bits (237), Expect = 6e-23
 Identities = 33/169 (19%), Positives = 71/169 (42%), Gaps = 15/169 (8%)

Query: 25  SHNYTKEYLQNY---PSIQVDVVPISDVPD---VIANYH-LCVVKTMRLDSNCISR--AN 75
           +     +Y + +       ++        +       +  +  ++T    +    +  A 
Sbjct: 8   ARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAY 67

Query: 76  QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMR 135
            +K +    VG + +D+ A  + GI+++ +P     + A+ AE  +   L LLR   +++
Sbjct: 68  GIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPA---YSPAAIAEFALTDTLYLLRNMGKVQ 124

Query: 136 MAIEQKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
             ++       G   G+ L  +TV ++G G+IG    K  + FG K+IA
Sbjct: 125 AQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIA 173

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score = 95.0 bits (237), Expect = 1e-22
 Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)

Query: 31  EYLQNYPSIQVDVVPISDVPD----VIANYHLCVV--KTMRLDSNCISRANQMKLIMQFG 84
           EY ++     V  +P +         I++ H+  +  +T +L     + AN++  +  F 
Sbjct: 30  EYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRT-QLTEEIFAAANRLIAVGCFS 88

Query: 85  VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR----KQNEMRMAI-E 139
           VG   V++ AA + GI V   P     N  S AEL I  ++ L+R    +         E
Sbjct: 89  VGTNQVELKAARKRGIPVFNAPF---SNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWE 145

Query: 140 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           +  +G      + GKT+ I+G+GNIG ++       G+ +  
Sbjct: 146 KTAIG---SREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRY 184

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score = 93.8 bits (234), Expect = 2e-22
 Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 44/229 (19%)

Query: 33  LQNYPSIQVDVVPISDVPDV---IANYH-LCVV--KTMRLDSNCISRANQMKLIMQFGV- 85
           L     ++V    +  V  +   +A+   L ++  +T R+    + R  ++K+I Q G  
Sbjct: 23  LLQDHEVKVFNNTVKGVGQLAARVADVEALVLIRERT-RVTRQLLDRLPKLKIISQTGRV 81

Query: 86  ---GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK----QNEMR--- 135
                  +D+ A T  G+ V    G    +  + AELT  L++   R+       ++   
Sbjct: 82  SRDAGGHIDLEACTDKGVVVLEGKG----SPVAPAELTWALVMAAQRRIPQYVASLKHGA 137

Query: 136 -----MAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS 190
                +           G  L G+T+ I G+G IG  +A   R FG+ ++     W    
Sbjct: 138 WQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLV----WGRE- 192

Query: 191 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT 239
                S   A  +G    + + K   + +FE   ++DV+   L LN +T
Sbjct: 193 ----NSKERARADGF--AVAESK---DALFE---QSDVLSVHLRLNDET 229

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score = 88.9 bits (221), Expect = 2e-20
 Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 24/156 (15%)

Query: 28  YTKEYLQNYPSIQVDVVPISDV-PDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGV 85
           Y +E        +V  VP   +  + + +    +V+++ +++ + +S    +  +     
Sbjct: 14  YARELFSRLG--EVKAVPGRPIPVEELNHADALMVRSVTKVNESLLS-GTPINFVGTATA 70

Query: 86  GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV 145
           G + VD     + GI  +  PG    NA +  E     +L L  +               
Sbjct: 71  GTDHVDEAWLKQAGIGFSAAPG---CNAIAVVEYVFSALLMLAERD-------------- 113

Query: 146 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
             G +L  +T+ I+G GN+G  L  RL   G++ + 
Sbjct: 114 --GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLL 147

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score = 85.4 bits (212), Expect = 2e-19
 Identities = 23/156 (14%), Positives = 58/156 (37%), Gaps = 24/156 (15%)

Query: 28  YTKEYLQNYPSIQVDVVP-ISDVPDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGV 85
               +        +  +P  +     +A   + +V+++  +    ++  + ++ +    +
Sbjct: 11  VVDAFFA--DQGSIRRLPGRAIDRAALAEVDVLLVRSVTEVSRAALA-GSPVRFVGTCTI 67

Query: 86  GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV 145
           G + +D++     GI  +  PG    NA    +  +  +L +   +              
Sbjct: 68  GTDHLDLDYFAEAGIAWSSAPG---CNARGVVDYVLGCLLAMAEVR-------------- 110

Query: 146 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
             G  L  +T  ++G G +G  L + LR  G K++ 
Sbjct: 111 --GADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLV 144

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score = 82.0 bits (203), Expect = 3e-18
 Identities = 38/230 (16%), Positives = 84/230 (36%), Gaps = 23/230 (10%)

Query: 13  TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCIS 72
            R L       A +    +   + P +++         + +      ++         ++
Sbjct: 5   QRTLLLLSQDNAHYERLLK-AAHLPHLRILRADNQSDAEKLIGEAHILMAEPARAKPLLA 63

Query: 73  RANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN 132
           +AN++        G++ + ++A  R   ++  + G         +E     +L L+R+  
Sbjct: 64  KANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRG---IFGPLMSEYVFGHLLSLMRQLP 119

Query: 133 EMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV 192
             R   +Q+       + L G+T+ ILG G+IG  +A   + FG+K++   RS    +  
Sbjct: 120 LYREQQKQRLWQSHPYQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF 179

Query: 193 SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKL 242
                                     + +  ++ADV+V  L   ++T  L
Sbjct: 180 DQVYQL------------------PALNKMLAQADVIVSVLPATRETHHL 211

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score = 78.1 bits (193), Expect = 6e-17
 Identities = 38/234 (16%), Positives = 79/234 (33%), Gaps = 33/234 (14%)

Query: 14  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISR 73
            ++F  P F A+  +     +  P  +V    + D           +V    ++   +  
Sbjct: 5   EIIFYHPTFNAAW-WVNALEKALPHARVREWKVGDNNPA----DYALVWQPPVE---MLA 56

Query: 74  ANQMKLIMQFGVGLEGVDINAATR-----CGIKVARIPGDVTGNAASCAELTIYLMLGLL 128
             ++K +   G G++ +              I + R+     G      E  +  +L   
Sbjct: 57  GRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQM--QEYAVSQVLHWF 114

Query: 129 RKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188
           R+ ++ +    Q         T    +V I+G G +G ++A+ L+ +G  +    RS  S
Sbjct: 115 RRFDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKS 174

Query: 189 HSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKL 242
              V                        E++  F ++  V++  L    QTV +
Sbjct: 175 WPGVESYVGR------------------EELRAFLNQTRVLINLLPNTAQTVGI 210

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 56.1 bits (135), Expect = 2e-09
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 20/98 (20%)

Query: 136 MAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ 195
           MAI+       T  T+ G  V +LG G +G+ +A++    G K+    R     ++    
Sbjct: 144 MAIQH------TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLAR---- 193

Query: 196 SSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 233
                     I ++  E        +     DV +  +
Sbjct: 194 ----------IAEMGMEPFHISKAAQELRDVDVCINTI 221

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286

 Score = 44.9 bits (106), Expect = 9e-06
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
            T+   G G     L++ L P G +II T R+
Sbjct: 6   GTLLSFGHGYTARVLSRALAPQGWRIIGTSRN 37

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A Length = 440

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 206
           G  + G  V I GFGN+G   A+     G +++A          V   +  +  + GI  
Sbjct: 230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVA----------VQDHTGTVYNEAGIDP 279

Query: 207 DDLVDEKGCHEDIFEFA 223
            DL+        +  + 
Sbjct: 280 YDLLRHVQEFGGVRGYP 296

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A Length = 424

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 11/80 (13%)

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 206
           G  L    + I GFGN G  LAK +   G K+I           +S  +  L   +G+ I
Sbjct: 216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIG----------ISDANGGLYNPDGLDI 265

Query: 207 DDLVDEKGCHEDIFEFASKA 226
             L+D++     +    +  
Sbjct: 266 PYLLDKRDSFGMVTNLFTDV 285

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} Length = 419

 Score = 43.6 bits (104), Expect = 4e-05
 Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 11/77 (14%)

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 206
           G  L G  V + G G +G  +A      G++++A          V+     +    G+ +
Sbjct: 213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVA----------VATSMGGMYAPEGLDV 262

Query: 207 DDLVDEKGCHEDIFEFA 223
            +++        +    
Sbjct: 263 AEVLSAYEATGSLPRLD 279

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
             + I G G++G+ELA+RL   G ++   +RS
Sbjct: 4   SKILIAGCGDLGLELARRLTAQGHEVTGLRRS 35

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* Length = 501

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 206
                 KT  + GFGN+G+   + L  FG K I           V     ++   +GI  
Sbjct: 239 TPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIT----------VGESDGSIWNPDGIDP 288

Query: 207 DDLVDEKGCHEDIFEFA 223
            +L D K  H  I  F 
Sbjct: 289 KELEDFKLQHGTILGFP 305

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A Length = 419

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 15/85 (17%)

Query: 141 KKLGVPTGETLLGKTVFILGFGNIGVELAKRL-RPFGVKIIATKRSWASHSQVSCQSSAL 199
           K LG    +TL GKT+ I G+GN G  LAK +   FG+K++A          VS     +
Sbjct: 203 KVLGW---DTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVA----------VSDSKGGI 249

Query: 200 AVKNGI-IDDLVDEKGCHEDIFEFA 223
              +G+  D+++  K  H  + +F 
Sbjct: 250 YNPDGLNADEVLKWKNEHGSVKDFP 274

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A Length = 415

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 12/78 (15%)

Query: 148 GETLLGKTVFILGFGNIGVELAKRL-RPFGVKIIATKRSWASHSQVSCQSSALAVKNGI- 205
           G      TV + GFGN+G   A  + +  G K++A          VS     +    G  
Sbjct: 204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVA----------VSDSRGGIYNPEGFD 253

Query: 206 IDDLVDEKGCHEDIFEFA 223
           +++L+  K  H  +  + 
Sbjct: 254 VEELIRYKKEHGTVVTYP 271

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 Length = 421

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 11/67 (16%)

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 206
              + GKTV I G GN+G   A  L   G K+IA          VS  +     K G+ +
Sbjct: 205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIA----------VSDINGVAYRKEGLNV 254

Query: 207 DDLVDEK 213
           + +   K
Sbjct: 255 ELIQKNK 261

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} Length = 421

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 206
           G  +    + + GFGN+G    K +   G K+ A      +    +  + AL  +NGI  
Sbjct: 207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCA-----IAEWDRNEGNYALYNENGIDF 261

Query: 207 DDLVDEKGCHEDIFEFA 223
            +L+  K  ++ +  F 
Sbjct: 262 KELLAYKEANKTLIGFP 278

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Length = 364

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 140 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
           ++  G    ++L G  V + G GN+   L K+L   G K++ T
Sbjct: 163 KEAFG---SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVT 202

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 Length = 279

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 15/77 (19%)

Query: 156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC 215
           + ++G G IG  LA  LR  G  +I       S  Q +C+    AV+  ++D+   +   
Sbjct: 3   IGVVGLGLIGASLAGDLRRRGHYLIGV-----SRQQSTCE---KAVERQLVDEAGQD--- 51

Query: 216 HEDIFEFASKADVVVCC 232
                     A ++  C
Sbjct: 52  ----LSLLQTAKIIFLC 64

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A Length = 290

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 16/81 (19%)

Query: 154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD 211
           KT++I G G IG  LA  ++      KI+   R        S +S  +A++ GI+D+   
Sbjct: 7   KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNR--------SDRSRDIALERGIVDE--- 55

Query: 212 EKGCHEDIFEFASKADVVVCC 232
                 D   FA+ ADV++  
Sbjct: 56  ---ATADFKVFAALADVIILA 73

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Length = 355

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 141 KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
              G+ +   L G TV + G G +G  LA      G +++  
Sbjct: 166 AHRGLGS---LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVA 204

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} Length = 341

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 12/79 (15%)

Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK 213
           + V ILG G IG  L + L      +        + S+   +    AV  G       + 
Sbjct: 9   RPVCILGLGLIGGSLLRDLHAANHSVFG-----YNRSRSGAK---SAVDEGFDV--SAD- 57

Query: 214 GCHEDIFEFASKADVVVCC 232
                +   A++  ++V  
Sbjct: 58  -LEATLQRAAAEDALIVLA 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.96
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.95
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	99.92
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	99.91
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.8
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.77
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.74
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.73
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.72
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.71
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.65
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.59
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.37
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.36
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.33
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.33
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.16
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.15
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.13
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.12
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.08
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.08
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.08
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.04
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.04
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	99.01
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.01
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.0
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.0
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	98.99
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	98.99
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	98.98
4ezb_A	317	Uncharacterized conserved protein; structural geno	98.96
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	98.96
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.5
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	98.95
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.95
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	98.94
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	98.88
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	98.86
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	98.84
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	98.83
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	98.83
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	98.81
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	98.81
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	98.79
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.79
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	98.79
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	98.78
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.77
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	98.75
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	98.73
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.7
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	98.69
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	98.68
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.67
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.67
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.64
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	98.63
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.63
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.61
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	98.61
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	98.61
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.6
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.6
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.6
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.6
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	98.59
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.59
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.59
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	98.58
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.57
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.57
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.57
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.57
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	98.56
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.54
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.53
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.51
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.48
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.47
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.46
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.42
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.39
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.38
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.37
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.37
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.34
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.33
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.32
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.32
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.31
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.29
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.28
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.27
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.27
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.25
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.23
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.23
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.22
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.21
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	98.21
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.19
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.19
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.17
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.16
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.16
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.16
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.11
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.07
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.07
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.07
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	98.05
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.05
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	98.01
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.01
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	98.01
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.99
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.96
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.96
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	97.96
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.94
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	97.93
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.92
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	97.92
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.9
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.88
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	97.86
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	97.86
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.84
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.83
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.82
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.81
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	97.81
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.81
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.8
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.8
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.79
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	97.79
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.79
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.78
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	97.77
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.77
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.76
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	97.76
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.76
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.74
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.74
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	97.73
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	97.7
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.7
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	97.69
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.68
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	97.67
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.67
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	97.66
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.63
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.62
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.61
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	97.61
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	97.59
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	97.58
2duw_A	145	Putative COA-binding protein; ligand binding prote	97.58
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.57
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.5
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	97.48
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	97.47
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	97.47
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.44
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.43
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	97.43
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	97.37
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	97.36
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.35
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	97.35
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.32
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	97.32
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	97.32
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	97.3
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.3
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.3
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.28
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	97.27
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.25
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	97.23
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.23
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.23
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.23
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.22
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.21
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.2
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.19
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.19
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.18
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.16
1js1_X	324	Transcarbamylase; alpha/beta topology, two domains	97.16
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.14
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	97.14
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	97.14
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.13
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.13
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.11
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.11
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.1
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.08
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.08
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	97.06
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	97.04
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	97.03
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	97.02
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.02
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.97
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	96.95
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.93
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.93
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.92
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.92
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.91
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.9
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.9
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.88
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.88
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	96.87
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.85
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	96.84
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.84
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.82
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	96.82
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	96.82
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.81
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	96.8
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	96.8
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.78
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.78
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	96.78
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.77
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.77
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.77
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	96.76
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.75
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.75
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	96.74
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	96.73
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.72
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	96.71
3q98_A	399	Transcarbamylase; rossmann fold, transferase; 2.00	96.71
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.7
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.69
2yfk_A	418	Aspartate/ornithine carbamoyltransferase; transcar	96.69
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.67
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.67
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	96.67
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.67
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.67
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.65
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.63
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.63
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.62
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	96.61
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	96.6
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	96.59
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.58
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.58
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.56
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	96.54
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	96.53
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.53
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.52
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.51
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.51
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.51
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.5
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	96.49
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	96.49
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.49
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	96.48
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.48
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	96.47
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.47
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.47
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	96.47
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	96.46
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.46
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.45
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	96.45
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.45
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.43
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.43
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.42
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	96.42
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.41
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	96.4
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.39
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.38
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	96.37
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.35
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	96.33
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	96.32
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.31
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	96.3
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	96.3
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	96.29
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	96.27
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.27
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.26
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	96.26
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	96.24
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	96.24
1ydw_A	362	AX110P-like protein; structural genomics, protein	96.24
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.22
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	96.22
4had_A	350	Probable oxidoreductase protein; structural genomi	96.21
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.21
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	96.2
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.2
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.2
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.19
3kzn_A	359	Aotcase, N-acetylornithine carbamoyltransferase; t	96.18
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	96.18
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.17
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	96.17
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	96.17
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.16
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.16
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.15
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.15
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.14
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	96.14
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	96.13
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	96.12
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.12
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.08
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.06
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.05
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	96.04
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.03
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.01
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.01
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	95.99
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	95.96
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	95.96
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.95
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	95.92
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	95.92
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.92
1xq6_A	253	Unknown protein; structural genomics, protein stru	95.91
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	95.91
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.88
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	95.87
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	95.85
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.85
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	95.84
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	95.82
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.82
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	95.82
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	95.81
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	95.8
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.8
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	95.79
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	95.78
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	95.77
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	95.76
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	95.76
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	95.75
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	95.74
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	95.74
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	95.74
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	95.74
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	95.74
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	95.73
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	95.73
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	95.72
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	95.71
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	95.7
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	95.69
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.66
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	95.66
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	95.66
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	95.66
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	95.66
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	95.65
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.64
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	95.63
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	95.63
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	95.61
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	95.61
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	95.6
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.6
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	95.6
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	95.57
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	95.56
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	95.55
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	95.54
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	95.53
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	95.52
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	95.52
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.51
1lnq_A	336	MTHK channels, potassium channel related protein;	95.5
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	95.49
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	95.49
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	95.49
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	95.48
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	95.48
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	95.47
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	95.47
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	95.46
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.46
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	95.45
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	95.44
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	95.42
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.4
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	95.4
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	95.38
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	95.38
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	95.36
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.35
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	95.35
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	95.34
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	95.34
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	95.33
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	95.33
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	95.32
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	95.32
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	95.31
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	95.3
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	95.27
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	95.27
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	95.26
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	95.25
1xhl_A	297	Short-chain dehydrogenase/reductase family member	95.25
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	95.24
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	95.24
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	95.22
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	95.22
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	95.21
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.2
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.2
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	95.19
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	95.18
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.18
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	95.17
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	95.16
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	95.16
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	95.15
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	95.15
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	95.13
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	95.13
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	95.12
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	95.11
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	95.11
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	95.07
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	95.06
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	95.04
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	95.03
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	95.0
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.99
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	94.99
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	94.99
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	94.98
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	94.97
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	94.95
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	94.93
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	94.92
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	94.92
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	94.9

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=4.8e-50  Score=366.07  Aligned_cols=232  Identities=21%  Similarity=0.287  Sum_probs=195.5

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEeeCCCCC-hhhhcCCceEEEEe-CCCCCHHHHhcCCCceEEEEccccCCcc
Q 024297           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISD-VPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGV   90 (269)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~d~i   90 (269)
                      ||||++.... +..++.++.++.+ .+++...+..+ ..+.++++|+++++ .+++++++|+++|+||||++.|+|+|++
T Consensus         1 Mkil~~~~~~-~~~p~~~e~l~~~-~~~~~~~~~~~~~~~~l~~ad~i~v~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~i   78 (334)
T 3kb6_A            1 MNVLFTSVPQ-EDVPFYQEALKDL-SLKIYTTDVSKVPENELKKAELISVFVYDKLTEELLSKMPRLKLIHTRSVGFDHI   78 (334)
T ss_dssp             -CEEECSCCT-THHHHHHHHTTTS-CEEECSSCGGGSCHHHHHHCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTTB
T ss_pred             CEEEEeCCCc-ccCHHHHHHHHhC-CcEEEeCCcccCCHHHhcCCCEEEEeCCCCCCHHHHhcCCCCcEEEECCcccchh
Confidence            7889887643 3345556666554 33433333222 24567899988764 5789999999999999999999999999


Q ss_pred             chhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC---ccccccCCEEEEEecCchHHH
Q 024297           91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---TGETLLGKTVFILGFGNIGVE  167 (269)
Q Consensus        91 d~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~---~~~~l~g~~vgIiG~G~iG~~  167 (269)
                      |+++++++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|...   .+.++.|+|+||||+|+||++
T Consensus        79 d~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiG~G~IG~~  155 (334)
T 3kb6_A           79 DLDYCKKKGILVTHIPAY---SPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSR  155 (334)
T ss_dssp             CHHHHHHHTCEEECCTTS---CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCGGGCBCCGGGSEEEEECCSHHHHH
T ss_pred             cHHHHHHCCCEEEECCCc---CcHHHHHHHHHHHHHHhhccccccccccccccccccccccceecCcEEEEECcchHHHH
Confidence            999999999999999998   88999999999999999999999999999988653   568999999999999999999


Q ss_pred             HHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHH
Q 024297          168 LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSL  247 (269)
Q Consensus       168 ~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~  247 (269)
                      +|+++++|||+|++||+...+.                   .......+.++++++++||+|++|||+|++|+++||++.
T Consensus       156 va~~~~~fg~~v~~~d~~~~~~-------------------~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~~  216 (334)
T 3kb6_A          156 VAMYGLAFGMKVLCYDVVKRED-------------------LKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEER  216 (334)
T ss_dssp             HHHHHHHTTCEEEEECSSCCHH-------------------HHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHH
T ss_pred             HHHhhcccCceeeecCCccchh-------------------hhhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCHHH
Confidence            9999999999999999865431                   111111357899999999999999999999999999999


Q ss_pred             HhhhCCCCcEEEEccCCCCccC
Q 024297          248 SSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       248 l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      |+ +||+|++|||+|||++|||
T Consensus       217 l~-~mk~~a~lIN~aRG~iVde  237 (334)
T 3kb6_A          217 IS-LMKDGVYLINTARGKVVDT  237 (334)
T ss_dssp             HH-HSCTTEEEEECSCGGGBCH
T ss_pred             Hh-hcCCCeEEEecCccccccH
Confidence            99 9999999999999999996

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=1.1e-48  Score=357.92  Aligned_cols=234  Identities=22%  Similarity=0.336  Sum_probs=197.5

Q ss_pred             CCcceEEEeCCCCCCchhhHHHHHhcCCCeEEee----CCCCChhhhcCCceEEEEe-CCCCCHHHHhcC-CCceEEEEc
Q 024297           10 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV----VPISDVPDVIANYHLCVVK-TMRLDSNCISRA-NQMKLIMQF   83 (269)
Q Consensus        10 ~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~-~~Lk~I~~~   83 (269)
                      +.+||||++.+..++   ..+.+.+.+ ++.+..    .+.+++.+.++++|+++++ ..++++++++.+ |+||||++.
T Consensus        26 ~~~~kvlv~~~~~~~---~~~~l~~~~-~v~~~~~~~~~~~~~l~~~~~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~  101 (345)
T 4g2n_A           26 HPIQKAFLCRRFTPA---IEAELRQRF-DLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATL  101 (345)
T ss_dssp             -CCCEEEESSCCCHH---HHHHHHHHS-EEEECTTCCCCCHHHHHHHTTTCSEEEECTTSCBCHHHHHHTTTTCCEEEES
T ss_pred             CCCCEEEEeCCCCHH---HHHHHHccC-CEEEecCCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHHhhcCCceEEEEc
Confidence            457899999886443   223333333 333322    2445677889999999886 478999999997 799999999


Q ss_pred             cccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC-----CccccccCCEEEE
Q 024297           84 GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKTVFI  158 (269)
Q Consensus        84 ~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~g~~vgI  158 (269)
                      |+|+|++|+++++++||.|+|+||+   ++.+|||++++++|++.|++..+++.++++.|..     ..+.++.|+||||
T Consensus       102 ~~G~D~id~~~a~~~gI~V~n~pg~---~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGI  178 (345)
T 4g2n_A          102 SVGYDHIDMAAARSLGIKVLHTPDV---LSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGI  178 (345)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCCSC---CHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEE
T ss_pred             CCcccccCHHHHHhCCEEEEECCcc---cchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEE
Confidence            9999999999999999999999998   8899999999999999999999999999999973     2478999999999


Q ss_pred             EecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCcc
Q 024297          159 LGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ  238 (269)
Q Consensus       159 iG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~  238 (269)
                      ||+|.||+.+|++|++|||+|++|||++.+..                  ........+++++++++||+|++|+|+|++
T Consensus       179 IGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~------------------~~~g~~~~~~l~ell~~sDvV~l~~Plt~~  240 (345)
T 4g2n_A          179 FGMGRIGRAIATRARGFGLAIHYHNRTRLSHA------------------LEEGAIYHDTLDSLLGASDIFLIAAPGRPE  240 (345)
T ss_dssp             ESCSHHHHHHHHHHHTTTCEEEEECSSCCCHH------------------HHTTCEECSSHHHHHHTCSEEEECSCCCGG
T ss_pred             EEeChhHHHHHHHHHHCCCEEEEECCCCcchh------------------hhcCCeEeCCHHHHHhhCCEEEEecCCCHH
Confidence            99999999999999999999999999764311                  000000125899999999999999999999


Q ss_pred             ccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          239 TVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       239 t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      |+++|+++.|+ .||+|++|||+|||++|||
T Consensus       241 T~~li~~~~l~-~mk~gailIN~aRG~~vde  270 (345)
T 4g2n_A          241 LKGFLDHDRIA-KIPEGAVVINISRGDLIND  270 (345)
T ss_dssp             GTTCBCHHHHH-HSCTTEEEEECSCGGGBCH
T ss_pred             HHHHhCHHHHh-hCCCCcEEEECCCCchhCH
Confidence            99999999999 9999999999999999996

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=2.1e-48  Score=353.40  Aligned_cols=232  Identities=19%  Similarity=0.239  Sum_probs=200.4

Q ss_pred             CcceEEEeCCCCCCchhhHHHH-HhcCCCeEEeeC-CCCChhhhcCCceEEEEeCCCCCHHHHhcCCCceEEEEccccCC
Q 024297           11 NITRVLFCGPHFPASHNYTKEY-LQNYPSIQVDVV-PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLE   88 (269)
Q Consensus        11 ~~~~vl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d   88 (269)
                      ++|||+++.+..+   .+.+.+ .+.+|++++... +.+++.+.++++|++++. ..++++.++.+|+||||++.|+|+|
T Consensus         4 ~~mkili~~~~~~---~~~~~L~~~~~p~~~~~~~~~~~~~~~~~~~ad~li~~-~~~~~~~l~~~~~Lk~I~~~~~G~d   79 (324)
T 3hg7_A            4 SQRTLLLLSQDNA---HYERLLKAAHLPHLRILRADNQSDAEKLIGEAHILMAE-PARAKPLLAKANKLSWFQSTYAGVD   79 (324)
T ss_dssp             CCEEEEEESTTHH---HHHHHHHHSCCTTEEEEECSSHHHHHHHGGGCSEEEEC-HHHHGGGGGGCTTCCEEEESSSCCG
T ss_pred             cccEEEEecCCCH---HHHHHHhhccCCCeEEEeCCChhHHHHHhCCCEEEEEC-CCCCHHHHhhCCCceEEEECCCCCC
Confidence            4589999988632   344555 567889888754 345667889999998874 3556788999999999999999999


Q ss_pred             ccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHH
Q 024297           89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVEL  168 (269)
Q Consensus        89 ~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~  168 (269)
                      ++|.+++++ ||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|....+.+++|+||||||+|.||+.+
T Consensus        80 ~id~~~~~~-gI~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tvGIIGlG~IG~~v  155 (324)
T 3hg7_A           80 VLLDARCRR-DYQLTNVRGI---FGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQGLKGRTLLILGTGSIGQHI  155 (324)
T ss_dssp             GGSCTTSCC-SSEEECCCSC---CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTTCEEEEECCSHHHHHH
T ss_pred             ccChHHHhC-CEEEEECCCc---ChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCCCCcccccceEEEEEECHHHHHH
Confidence            999988754 9999999998   889999999999999999999999999999999877889999999999999999999


Q ss_pred             HHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHH
Q 024297          169 AKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLS  248 (269)
Q Consensus       169 a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l  248 (269)
                      |++|++|||+|++|||++....                  .........++++++++||+|++|+|+|++|+++++++.|
T Consensus       156 A~~l~~~G~~V~~~dr~~~~~~------------------~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l  217 (324)
T 3hg7_A          156 AHTGKHFGMKVLGVSRSGRERA------------------GFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRF  217 (324)
T ss_dssp             HHHHHHTTCEEEEECSSCCCCT------------------TCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTT
T ss_pred             HHHHHhCCCEEEEEcCChHHhh------------------hhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHH
Confidence            9999999999999999864311                  1111113468999999999999999999999999999999


Q ss_pred             hhhCCCCcEEEEccCCCCccC
Q 024297          249 SKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       249 ~~~mk~ga~lIN~~RG~~vde  269 (269)
                      + .||+|++|||+|||++|||
T Consensus       218 ~-~mk~gailIN~aRG~~vde  237 (324)
T 3hg7_A          218 E-HCKPGAILFNVGRGNAINE  237 (324)
T ss_dssp             T-CSCTTCEEEECSCGGGBCH
T ss_pred             h-cCCCCcEEEECCCchhhCH
Confidence            9 9999999999999999986

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=3e-48  Score=352.63  Aligned_cols=231  Identities=19%  Similarity=0.265  Sum_probs=196.6

Q ss_pred             cceEEEeCCCCCCchhhHHHHHhcCCCeEEeeCCCCChhhhcCCceEEEEeCCCCCHHHH-hcCCCceEEEEccccCCcc
Q 024297           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCI-SRANQMKLIMQFGVGLEGV   90 (269)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~i~~~~~~~~~~l-~~~~~Lk~I~~~~aG~d~i   90 (269)
                      |||||++.+..+   +..+.+.+.+|++++...+. ...+.++++|+++++..++ ++++ +.+|+||||++.|+|+|++
T Consensus         1 m~kil~~~~~~~---~~~~~L~~~~~~~~~~~~~~-~~~~~~~~ad~l~~~~~~~-~~~l~~~~~~Lk~I~~~~~G~d~i   75 (324)
T 3evt_A            1 MSLVLMAQATKP---EQLQQLQTTYPDWTFKDAAA-VTAADYDQIEVMYGNHPLL-KTILARPTNQLKFVQVISAGVDYL   75 (324)
T ss_dssp             -CEEEECSCCCH---HHHHHHHHHCTTCEEEETTS-CCTTTGGGEEEEESCCTHH-HHHHHSTTCCCCEEECSSSCCTTS
T ss_pred             CcEEEEecCCCH---HHHHHHHhhCCCeEEecCCc-cChHHhCCcEEEEECCcCh-HHHHHhhCCCceEEEECCcccccc
Confidence            589999988643   34444556677777654332 3345678999988765556 8888 6799999999999999999


Q ss_pred             chhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHH-HHHHHhCCCCCC-ccccccCCEEEEEecCchHHHH
Q 024297           91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM-RMAIEQKKLGVP-TGETLLGKTVFILGFGNIGVEL  168 (269)
Q Consensus        91 d~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~-~~~~~~~~w~~~-~~~~l~g~~vgIiG~G~iG~~~  168 (269)
                      |+++++++||.|+|+||+   ++.+||||+++++|++.|++..+ .+.++++.|... .+.++.|+||||||+|.||+.+
T Consensus        76 d~~~~~~~gI~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~~~~~l~gktvGIiGlG~IG~~v  152 (324)
T 3evt_A           76 PLKALQAAGVVVANTSGI---HADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSL  152 (324)
T ss_dssp             CHHHHHHTTCEEECCTTH---HHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSSCCCCSTTCEEEEECCSHHHHHH
T ss_pred             CHHHHHHCCcEEEECCCc---CchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCCCCccccCCeEEEECcCHHHHHH
Confidence            999999999999999998   88999999999999999999999 999999999876 4889999999999999999999


Q ss_pred             HHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHH
Q 024297          169 AKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLS  248 (269)
Q Consensus       169 a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l  248 (269)
                      |++|++|||+|++|||+..+..                  .........++++++++||+|++|+|+|++|+++++++.|
T Consensus       153 A~~l~~~G~~V~~~dr~~~~~~------------------~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l  214 (324)
T 3evt_A          153 AAKASALGMHVIGVNTTGHPAD------------------HFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELF  214 (324)
T ss_dssp             HHHHHHTTCEEEEEESSCCCCT------------------TCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHH
T ss_pred             HHHHHhCCCEEEEECCCcchhH------------------hHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHH
Confidence            9999999999999999865421                  1111112357899999999999999999999999999999


Q ss_pred             hhhCCCCcEEEEccCCCCccC
Q 024297          249 SKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       249 ~~~mk~ga~lIN~~RG~~vde  269 (269)
                      + .||+|++|||+|||++|||
T Consensus       215 ~-~mk~gailIN~aRG~~vd~  234 (324)
T 3evt_A          215 Q-QTKQQPMLINIGRGPAVDT  234 (324)
T ss_dssp             H-TCCSCCEEEECSCGGGBCH
T ss_pred             h-cCCCCCEEEEcCCChhhhH
Confidence            9 9999999999999999986

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=8e-48  Score=350.97  Aligned_cols=232  Identities=19%  Similarity=0.233  Sum_probs=196.7

Q ss_pred             cceEEEeCCCCCCchhhHHHHHhcCCCeEEee----CCCCChhhhcCCceEEEE-eCCCCCHHHHhcCCCceEEEEcccc
Q 024297           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV----VPISDVPDVIANYHLCVV-KTMRLDSNCISRANQMKLIMQFGVG   86 (269)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~dv~i~-~~~~~~~~~l~~~~~Lk~I~~~~aG   86 (269)
                      ++|||++.+..++    ..+.+++..++.+..    .+.+++.+.++++|++++ +..++++++++.+|+||||++.|+|
T Consensus         2 ~~kvlv~~~~~~~----~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~i~~~~l~~~~~Lk~I~~~~~G   77 (330)
T 4e5n_A            2 LPKLVITHRVHEE----ILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKG   77 (330)
T ss_dssp             CCEEEECSCCCHH----HHHHHTTTCEEECCCSSSCCCHHHHHHHHTTCSEEEECTTCCBCHHHHHHCTTCCEEEESSSC
T ss_pred             CCEEEEecCCCHH----HHHHHHhCCeEEEecCCCCCCHHHHHHHhCCCeEEEEeCCCCCCHHHHhhCCCCcEEEECCCc
Confidence            5789999875432    234444433333321    234567778899999987 4678999999999999999999999


Q ss_pred             CCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCC----CCccccccCCEEEEEecC
Q 024297           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG----VPTGETLLGKTVFILGFG  162 (269)
Q Consensus        87 ~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~----~~~~~~l~g~~vgIiG~G  162 (269)
                      +|++|+++++++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|.    ...+.++.|+||||||+|
T Consensus        78 ~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG~G  154 (330)
T 4e5n_A           78 FDNFDVDACTARGVWLTFVPDL---LTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMG  154 (330)
T ss_dssp             CTTBCHHHHHHTTCEEECCSST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEECCS
T ss_pred             ccccCHHHHHhcCcEEEeCCCC---CchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEeeC
Confidence            9999999999999999999998   889999999999999999999999999999986    235789999999999999


Q ss_pred             chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEEEecCCCccccC
Q 024297          163 NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTVK  241 (269)
Q Consensus       163 ~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~~lp~t~~t~~  241 (269)
                      .||+.+|++|++|||+|++||++..+...                  ....+ ...++++++++||+|++|+|+|++|++
T Consensus       155 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~~------------------~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~  216 (330)
T 4e5n_A          155 AIGLAMADRLQGWGATLQYHEAKALDTQT------------------EQRLGLRQVACSELFASSDFILLALPLNADTLH  216 (330)
T ss_dssp             HHHHHHHHHTTTSCCEEEEECSSCCCHHH------------------HHHHTEEECCHHHHHHHCSEEEECCCCSTTTTT
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCcHhH------------------HHhcCceeCCHHHHHhhCCEEEEcCCCCHHHHH
Confidence            99999999999999999999997633110                  11111 235899999999999999999999999


Q ss_pred             cCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          242 LCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       242 li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      +++++.|+ .||+|++|||+|||++|||
T Consensus       217 li~~~~l~-~mk~gailIN~arg~~vd~  243 (330)
T 4e5n_A          217 LVNAELLA-LVRPGALLVNPCRGSVVDE  243 (330)
T ss_dssp             CBCHHHHT-TSCTTEEEEECSCGGGBCH
T ss_pred             HhCHHHHh-hCCCCcEEEECCCCchhCH
Confidence            99999999 9999999999999999986

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=3.1e-47  Score=348.18  Aligned_cols=232  Identities=19%  Similarity=0.259  Sum_probs=198.4

Q ss_pred             cceEEEeCCCCCCchhhHHHHHhcCCCeEEeeC---CCCChhhhcCCceEEEEe-CCCCCHH-HHhcCC--CceEEEEcc
Q 024297           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV---PISDVPDVIANYHLCVVK-TMRLDSN-CISRAN--QMKLIMQFG   84 (269)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~dv~i~~-~~~~~~~-~l~~~~--~Lk~I~~~~   84 (269)
                      ||||+++.. .+...++++++++.+ ++++...   ..+++.+.++++|++++. ..+++++ +++.+|  +||||++.|
T Consensus         1 Mmki~~~~~-~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~~   78 (343)
T 2yq5_A            1 MTKIAMYNV-SPIEVPYIEDWAKKN-DVEIKTTDQALTSATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRI   78 (343)
T ss_dssp             -CEEEEESC-CGGGHHHHHHHHHHH-TCEEEEESSCCSTTGGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEEESS
T ss_pred             CceEEEEec-CcccHHHHHHHHHhC-CeEEEECCCCCCHHHHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEEECc
Confidence            589999985 356677788887655 4555432   235677889999998876 5799999 999875  699999999


Q ss_pred             ccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHH-hCCCCC---CccccccCCEEEEEe
Q 024297           85 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIE-QKKLGV---PTGETLLGKTVFILG  160 (269)
Q Consensus        85 aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~-~~~w~~---~~~~~l~g~~vgIiG  160 (269)
                      +|+|+||+++++++||.|+|+|++   ++.+||||+++++|++.|++..+++.++ ++.|.+   ..++++.|+||||||
T Consensus        79 ~G~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~~~~l~gktvgIiG  155 (343)
T 2yq5_A           79 VGFNTINFDWTKKYNLLVTNVPVY---SPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLISNEIYNLTVGLIG  155 (343)
T ss_dssp             SCCTTBCSSTTCC--CEEECCSCS---CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGCBCCGGGSEEEEEC
T ss_pred             eeecccchhHHHhCCEEEEECCCC---CcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCCccccCCCeEEEEe
Confidence            999999999999999999999998   7899999999999999999999999999 887643   357899999999999


Q ss_pred             cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCcccc
Q 024297          161 FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTV  240 (269)
Q Consensus       161 ~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~  240 (269)
                      +|.||+.+|+++++|||+|++||++..+..                ...    ....++++++++||+|++|+|+|++|+
T Consensus       156 lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~----------------~~~----~~~~~l~ell~~aDvV~l~~Plt~~t~  215 (343)
T 2yq5_A          156 VGHIGSAVAEIFSAMGAKVIAYDVAYNPEF----------------EPF----LTYTDFDTVLKEADIVSLHTPLFPSTE  215 (343)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSCCGGG----------------TTT----CEECCHHHHHHHCSEEEECCCCCTTTT
T ss_pred             cCHHHHHHHHHHhhCCCEEEEECCChhhhh----------------hcc----ccccCHHHHHhcCCEEEEcCCCCHHHH
Confidence            999999999999999999999999764310                011    123589999999999999999999999


Q ss_pred             CcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          241 KLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       241 ~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      ++++++.|+ .||+|++|||+|||++|||
T Consensus       216 ~li~~~~l~-~mk~gailIN~aRg~~vd~  243 (343)
T 2yq5_A          216 NMIGEKQLK-EMKKSAYLINCARGELVDT  243 (343)
T ss_dssp             TCBCHHHHH-HSCTTCEEEECSCGGGBCH
T ss_pred             HHhhHHHHh-hCCCCcEEEECCCChhhhH
Confidence            999999999 9999999999999999986

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=3.6e-47  Score=354.50  Aligned_cols=235  Identities=22%  Similarity=0.268  Sum_probs=195.1

Q ss_pred             CCCCCcceEEEeCCCCCCchhhHHHHHhcC--CCeEEee--CCCCChhhhcCCceEEEEe-CCCCCHHHHhcCCCceEEE
Q 024297            7 SSDKNITRVLFCGPHFPASHNYTKEYLQNY--PSIQVDV--VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIM   81 (269)
Q Consensus         7 ~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~~~Lk~I~   81 (269)
                      +.++.++||++++...+..    .+.+++.  ..+++..  .+++++.+.++++|+++++ ..++++++++.+|+||+|+
T Consensus        10 ~~~~~~~kIl~~~~i~~~~----~~~l~~~g~~~v~~~~~~~~~~~l~~~~~~~d~l~v~~~~~i~~~~l~~~p~Lk~I~   85 (416)
T 3k5p_A           10 SLSRDRINVLLLEGISQTA----VEYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRTQLTEEIFAAANRLIAVG   85 (416)
T ss_dssp             --CGGGSCEEECSCCCHHH----HHHHHHTTCCCEEECSSCCCHHHHHHHHTTCSEEEECSSCCBCHHHHHHCTTCCEEE
T ss_pred             CCCCCCcEEEEECCCCHHH----HHHHHHCCCcEEEECCCCCCHHHHHHHccCCEEEEEcCCCCCCHHHHHhCCCcEEEE
Confidence            5566789999998865432    3344332  2444332  3456677889999988664 4789999999999999999


Q ss_pred             EccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC--ccccccCCEEEEE
Q 024297           82 QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFIL  159 (269)
Q Consensus        82 ~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~g~~vgIi  159 (269)
                      +.++|+|++|+++++++||.|+|+|++   |+.+|||++++++|++.|++..+.+.++++.|...  .+.+++|||||||
T Consensus        86 ~~~~G~d~IDl~~a~~~GI~V~n~p~~---n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~~~~el~gktvGII  162 (416)
T 3k5p_A           86 CFSVGTNQVELKAARKRGIPVFNAPFS---NTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIV  162 (416)
T ss_dssp             ECSSCCTTBCHHHHHHTTCCEECCSST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCCSTTCEEEEE
T ss_pred             ECccccCccCHHHHHhcCcEEEeCCCc---ccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccCCCCccCCCCEEEEE
Confidence            999999999999999999999999998   88999999999999999999999999999999754  4689999999999


Q ss_pred             ecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccc
Q 024297          160 GFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT  239 (269)
Q Consensus       160 G~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t  239 (269)
                      |+|.||+.+|+++++|||+|++||++.....                 ...   ....++++++++||+|++|+|+|++|
T Consensus       163 GlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~-----------------~~~---~~~~sl~ell~~aDvV~lhvPlt~~T  222 (416)
T 3k5p_A          163 GYGNIGSQVGNLAESLGMTVRYYDTSDKLQY-----------------GNV---KPAASLDELLKTSDVVSLHVPSSKST  222 (416)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECTTCCCCB-----------------TTB---EECSSHHHHHHHCSEEEECCCC----
T ss_pred             eeCHHHHHHHHHHHHCCCEEEEECCcchhcc-----------------cCc---EecCCHHHHHhhCCEEEEeCCCCHHH
Confidence            9999999999999999999999998753310                 000   12368999999999999999999999


Q ss_pred             cCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          240 VKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       240 ~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      +++|+++.|+ .||+|++|||+|||++|||
T Consensus       223 ~~li~~~~l~-~mk~gailIN~aRG~vvd~  251 (416)
T 3k5p_A          223 SKLITEAKLR-KMKKGAFLINNARGSDVDL  251 (416)
T ss_dssp             -CCBCHHHHH-HSCTTEEEEECSCTTSBCH
T ss_pred             hhhcCHHHHh-hCCCCcEEEECCCChhhhH
Confidence            9999999999 9999999999999999985

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=1.8e-46  Score=339.84  Aligned_cols=229  Identities=19%  Similarity=0.243  Sum_probs=196.7

Q ss_pred             cceEEEeCCCCCCchhhHHHHHhcCCCeEEeeCCCCChhhhcCCceEEEEeCCCCCHHHHhcCCCceEEEEccccCCcc-
Q 024297           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGV-   90 (269)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~i-   90 (269)
                      .|||+++.+.. ....+.+.+.+.+|++++...+..    ...++|+++++  .+++++++. |+||||++.++|+|++ 
T Consensus         3 ~mkil~~~~~~-~~~~~~~~l~~~~p~~~~~~~~~~----~~~~ad~~i~~--~~~~~~l~~-~~Lk~I~~~~aG~d~i~   74 (315)
T 3pp8_A            3 AMEIIFYHPTF-NAAWWVNALEKALPHARVREWKVG----DNNPADYALVW--QPPVEMLAG-RRLKAVFVLGAGVDAIL   74 (315)
T ss_dssp             CEEEEEECSSS-CHHHHHHHHHHHSTTEEEEECCTT----CCSCCSEEEES--SCCHHHHTT-CCCSEEEESSSCCHHHH
T ss_pred             ceEEEEEcCCC-chHHHHHHHHHHCCCCEEEecCCC----CccCcEEEEEC--CCCHHHhCC-CCceEEEECCEeccccc
Confidence            48899988854 345677888889999998765432    34689998874  568999999 9999999999999999 


Q ss_pred             c-hhh---HhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHH
Q 024297           91 D-INA---ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGV  166 (269)
Q Consensus        91 d-~~~---~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~  166 (269)
                      | +++   +.++||+|+|++++.  ++.+||||+++++|++.|++..+++.++++.|....++++.|+||||||+|.||+
T Consensus        75 d~~~a~~~~~~~gi~v~~~~~~~--~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tvGIiG~G~IG~  152 (315)
T 3pp8_A           75 SKLNAHPEMLDASIPLFRLEDTG--MGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGA  152 (315)
T ss_dssp             HHHHHCTTSSCTTSCEEEC--CC--CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTTCCEEEECCSHHHH
T ss_pred             chhhhhhhhhcCCCEEEEcCCCC--ccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCCCCCCcCCCEEEEEeeCHHHH
Confidence            7 776   678999999999872  5789999999999999999999999999999987778999999999999999999


Q ss_pred             HHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHH
Q 024297          167 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSS  246 (269)
Q Consensus       167 ~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~  246 (269)
                      ++|++|++|||+|++|+|++....                  .........++++++++||+|++|+|+|++|+++|+++
T Consensus       153 ~vA~~l~~~G~~V~~~dr~~~~~~------------------~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~  214 (315)
T 3pp8_A          153 KVAESLQAWGFPLRCWSRSRKSWP------------------GVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSE  214 (315)
T ss_dssp             HHHHHHHTTTCCEEEEESSCCCCT------------------TCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHH
T ss_pred             HHHHHHHHCCCEEEEEcCCchhhh------------------hhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhccHH
Confidence            999999999999999998765411                  11111122579999999999999999999999999999


Q ss_pred             HHhhhCCCCcEEEEccCCCCccC
Q 024297          247 LSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       247 ~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      .|+ .||+|++|||+|||++|||
T Consensus       215 ~l~-~mk~gailIN~aRG~~vd~  236 (315)
T 3pp8_A          215 LLD-QLPDGAYVLNLARGVHVQE  236 (315)
T ss_dssp             HHT-TSCTTEEEEECSCGGGBCH
T ss_pred             HHh-hCCCCCEEEECCCChhhhH
Confidence            999 9999999999999999986

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=2.5e-46  Score=341.75  Aligned_cols=232  Identities=24%  Similarity=0.331  Sum_probs=176.5

Q ss_pred             CCcceEEEeCCCCCCchhhHHHHHhcCCCeEEe-eCCCCChhhhcCCceEEEEe-CCCCCHHHHhcCCCceEEEEccccC
Q 024297           10 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVD-VVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGL   87 (269)
Q Consensus        10 ~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~   87 (269)
                      |.+++||++.+..++.   .+.+.+.++...+. ..+.+++.+.++++|+++++ ..++++++++.+|+||||++.|+|+
T Consensus        28 ~~~~~vl~~~~~~~~~---~~~L~~~~~v~~~~~~~~~~~~~~~~~~~d~li~~~~~~i~~~~l~~~p~Lk~I~~~g~G~  104 (340)
T 4dgs_A           28 NVKPDLLLVEPMMPFV---MDELQRNYSVHRLYQAADRPALEAALPSIRAVATGGGAGLSNEWMEKLPSLGIIAINGVGT  104 (340)
T ss_dssp             -----CEECSCCCHHH---HHTHHHHSCCEETTCGGGHHHHHHHGGGCCEEEEETTTCBCHHHHHHCSSCCEEEEESSCC
T ss_pred             CCCCEEEEECCCCHHH---HHHHhcCCcEEEeCCCCCHHHHHHHhCCcEEEEEcCCCCCCHHHHhhCCCCEEEEECCCCc
Confidence            3467899998864432   22232334222111 12334455566899998875 4689999999999999999999999


Q ss_pred             CccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC----ccccccCCEEEEEecCc
Q 024297           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP----TGETLLGKTVFILGFGN  163 (269)
Q Consensus        88 d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~----~~~~l~g~~vgIiG~G~  163 (269)
                      |++|+++++++||.|+|+||+   ++.+|||++++++|++.|++..+++.++++.|...    .+.+++|+||||||+|+
T Consensus       105 d~id~~~a~~~gI~V~n~pg~---~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~  181 (340)
T 4dgs_A          105 DKVDLARARRRNIDVTTTPGV---LADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQ  181 (340)
T ss_dssp             TTBCHHHHHHTTCEEECCCSS---SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCSH
T ss_pred             cccCHHHHHhCCEEEEECCCC---CcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCCH
Confidence            999999999999999999998   88999999999999999999999999999999753    46899999999999999


Q ss_pred             hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcC
Q 024297          164 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLC  243 (269)
Q Consensus       164 iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li  243 (269)
                      ||+++|+++++|||+|++|||+..+..                  ...   ...++++++++||+|++|+|+|++|++++
T Consensus       182 IG~~vA~~l~~~G~~V~~~dr~~~~~~------------------~~~---~~~sl~ell~~aDvVil~vP~t~~t~~li  240 (340)
T 4dgs_A          182 IGRALASRAEAFGMSVRYWNRSTLSGV------------------DWI---AHQSPVDLARDSDVLAVCVAASAATQNIV  240 (340)
T ss_dssp             HHHHHHHHHHTTTCEEEEECSSCCTTS------------------CCE---ECSSHHHHHHTCSEEEECC----------
T ss_pred             HHHHHHHHHHHCCCEEEEEcCCccccc------------------Cce---ecCCHHHHHhcCCEEEEeCCCCHHHHHHh
Confidence            999999999999999999999765410                  011   23689999999999999999999999999


Q ss_pred             CHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          244 SSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       244 ~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      +++.|+ .||+|++|||+|||++|||
T Consensus       241 ~~~~l~-~mk~gailIN~aRG~vvde  265 (340)
T 4dgs_A          241 DASLLQ-ALGPEGIVVNVARGNVVDE  265 (340)
T ss_dssp             CHHHHH-HTTTTCEEEECSCC-----
T ss_pred             hHHHHh-cCCCCCEEEECCCCcccCH
Confidence            999999 9999999999999999996

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=9.6e-46  Score=345.29  Aligned_cols=232  Identities=22%  Similarity=0.227  Sum_probs=195.3

Q ss_pred             CCcceEEEeCCCCCCchhhHHHHHhcC-C-CeEEe--eCCCCChhhhcCCceEEEEe-CCCCCHHHHhcCCCceEEEEcc
Q 024297           10 KNITRVLFCGPHFPASHNYTKEYLQNY-P-SIQVD--VVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFG   84 (269)
Q Consensus        10 ~~~~~vl~~~~~~~~~~~~~~~~~~~~-~-~~~~~--~~~~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~~~Lk~I~~~~   84 (269)
                      +.||||+++.+..+.    ..+.++.. . ++++.  ..+.+++.+.++++|+++++ .+++++++++.+|+||||++.+
T Consensus         2 ~~~~kil~~~~~~~~----~~~~l~~~~~~~v~~~~~~~~~~~l~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~   77 (404)
T 1sc6_A            2 KDKIKFLLVEGVHQK----ALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFA   77 (404)
T ss_dssp             CSSCCEEECSCCCHH----HHHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECS
T ss_pred             CCceEEEEeCCCCHH----HHHHHHhCCCcEEEEcCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCcEEEECC
Confidence            457899998775332    22344332 2 34332  23445667789999988764 4789999999999999999999


Q ss_pred             ccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC--ccccccCCEEEEEecC
Q 024297           85 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFG  162 (269)
Q Consensus        85 aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~g~~vgIiG~G  162 (269)
                      +|+|++|+++++++||.|+|+|++   |+.+||||+++++|++.|++..+.+.++++.|...  .+.+++|||+||||+|
T Consensus        78 ~G~d~iD~~~a~~~GI~V~n~p~~---n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~el~gktlGiIGlG  154 (404)
T 1sc6_A           78 IGTNQVDLDAAAKRGIPVFNAPFS---NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYG  154 (404)
T ss_dssp             SCCTTBCHHHHHHTTCCEECCTTT---THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCS
T ss_pred             cccCccCHHHHHhCCCEEEecCcc---cHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCccccCCCEEEEEeEC
Confidence            999999999999999999999998   88999999999999999999999999999999753  4689999999999999


Q ss_pred             chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCc
Q 024297          163 NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKL  242 (269)
Q Consensus       163 ~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~l  242 (269)
                      +||+.+|+++++|||+|++||++.....                 ....   ...++++++++||+|++|+|+|++|+++
T Consensus       155 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~-----------------~~~~---~~~~l~ell~~aDvV~l~~P~t~~t~~l  214 (404)
T 1sc6_A          155 HIGTQLGILAESLGMYVYFYDIENKLPL-----------------GNAT---QVQHLSDLLNMSDVVSLHVPENPSTKNM  214 (404)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCCCCC-----------------TTCE---ECSCHHHHHHHCSEEEECCCSSTTTTTC
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCCchhcc-----------------CCce---ecCCHHHHHhcCCEEEEccCCChHHHHH
Confidence            9999999999999999999998654310                 0011   2358999999999999999999999999


Q ss_pred             CCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          243 CSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       243 i~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      |+++.|+ .||+|++|||+|||++|||
T Consensus       215 i~~~~l~-~mk~ga~lIN~aRg~~vd~  240 (404)
T 1sc6_A          215 MGAKEIS-LMKPGSLLINASRGTVVDI  240 (404)
T ss_dssp             BCHHHHH-HSCTTEEEEECSCSSSBCH
T ss_pred             hhHHHHh-hcCCCeEEEECCCChHHhH
Confidence            9999999 9999999999999999985

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-45  Score=336.93  Aligned_cols=232  Identities=26%  Similarity=0.333  Sum_probs=194.2

Q ss_pred             CCcceEEEeCCCCCCchhhHHHHHhcCCCeEEee---CCCCChhhhcCCceEEEEeC-CCCCHHHHhcCCCceEEEEccc
Q 024297           10 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGV   85 (269)
Q Consensus        10 ~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~dv~i~~~-~~~~~~~l~~~~~Lk~I~~~~a   85 (269)
                      ++|++|+++.+..+    ...+.+++. ++++..   .+.+++.+.++++|+++++. .++++++++.+|+||||++.++
T Consensus        24 ~~~~~vli~~~~~~----~~~~~l~~~-~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~   98 (335)
T 2g76_A           24 ANLRKVLISDSLDP----CCRKILQDG-GLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGT   98 (335)
T ss_dssp             --CCEEEECSCCCH----HHHHHHHHH-TCEEEECCSCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHCSSCCEEEESSS
T ss_pred             ccceEEEEcCCCCH----HHHHHHHhC-CCEEEECCCCCHHHHHHHhcCceEEEEcCCCCCCHHHHhhCCCCcEEEECCC
Confidence            45778988776432    223344332 233332   23456677889999988753 5799999999999999999999


Q ss_pred             cCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC--ccccccCCEEEEEecCc
Q 024297           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGN  163 (269)
Q Consensus        86 G~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~g~~vgIiG~G~  163 (269)
                      |+|++|+++++++||.|+|+|++   ++.+||||+++++|++.|++..+++.++++.|...  .+.++.|+||||||+|.
T Consensus        99 G~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~l~g~tvgIIGlG~  175 (335)
T 2g76_A           99 GVDNVDLEAATRKGILVMNTPNG---NSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGR  175 (335)
T ss_dssp             SCTTBCHHHHHHHTCEEECCSST---THHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCCCTTCEEEEECCSH
T ss_pred             CcchhChHHHHhCCeEEEECCCc---cchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCCCCcCCCcCEEEEEeECH
Confidence            99999999999999999999998   88999999999999999999999999999999743  46799999999999999


Q ss_pred             hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEEEecCCCccccCc
Q 024297          164 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTVKL  242 (269)
Q Consensus       164 iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~~lp~t~~t~~l  242 (269)
                      ||+.+|+++++|||+|++||++..+. .                  ....+ ...++++++++||+|++|+|++++|+++
T Consensus       176 IG~~vA~~l~~~G~~V~~~d~~~~~~-~------------------~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~l  236 (335)
T 2g76_A          176 IGREVATRMQSFGMKTIGYDPIISPE-V------------------SASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGL  236 (335)
T ss_dssp             HHHHHHHHHHTTTCEEEEECSSSCHH-H------------------HHHTTCEECCHHHHGGGCSEEEECCCCCTTTTTS
T ss_pred             HHHHHHHHHHHCCCEEEEECCCcchh-h------------------hhhcCceeCCHHHHHhcCCEEEEecCCCHHHHHh
Confidence            99999999999999999999876431 0                  01111 2358999999999999999999999999


Q ss_pred             CCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          243 CSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       243 i~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      ++++.|+ .||+|++|||+|||+++||
T Consensus       237 i~~~~l~-~mk~gailIN~arg~vvd~  262 (335)
T 2g76_A          237 LNDNTFA-QCKKGVRVVNCARGGIVDE  262 (335)
T ss_dssp             BCHHHHT-TSCTTEEEEECSCTTSBCH
T ss_pred             hCHHHHh-hCCCCcEEEECCCccccCH
Confidence            9999999 9999999999999999985

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=8.6e-46  Score=339.70  Aligned_cols=218  Identities=26%  Similarity=0.379  Sum_probs=188.6

Q ss_pred             HHHHHhcCCCeEEeeC-----CCCChhhhcCCceEEEEeC---CCCCHHHHhcCCCceEEEEccccCCccchhhHhcCCc
Q 024297           29 TKEYLQNYPSIQVDVV-----PISDVPDVIANYHLCVVKT---MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGI  100 (269)
Q Consensus        29 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~dv~i~~~---~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI  100 (269)
                      +.+++++. ++++...     +.+++.+.++++|++++..   .+++++.++++|+||||++.|+|+|++|+++++++||
T Consensus        32 ~~~~L~~~-g~ev~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~~~~l~~~p~Lk~i~~~g~G~d~id~~~a~~~gI  110 (351)
T 3jtm_A           32 IRDWLESQ-GHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGL  110 (351)
T ss_dssp             CHHHHHHT-TCEEEEESCCSSTTSHHHHHTTTCSEEEECTTSCCCBCHHHHHHCSSCCEEEESSSCCTTBCHHHHHHTTC
T ss_pred             HHHHHHHC-CCEEEEeCCCCCCHHHHHHHhCCCEEEEEccCCCCCCCHHHHhhCCCCeEEEEeCeeecccCHHHHHhcCe
Confidence            35566554 3444432     3346788899999988743   4689999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC----CccccccCCEEEEEecCchHHHHHHHhccCC
Q 024297          101 KVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFG  176 (269)
Q Consensus       101 ~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~----~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G  176 (269)
                      .|+|+||+   |+.+||||+++++|++.|++..+++.++++.|..    ..+.++.|+||||||+|.||+.+|++|++||
T Consensus       111 ~V~n~~g~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G  187 (351)
T 3jtm_A          111 TVAEVTGS---NVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFG  187 (351)
T ss_dssp             EEEECTTT---THHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGC
T ss_pred             eEEECCCc---CchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCHHHHHHHHHHHHCC
Confidence            99999998   8899999999999999999999999999999974    2467899999999999999999999999999


Q ss_pred             CEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCC
Q 024297          177 VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFF  254 (269)
Q Consensus       177 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~  254 (269)
                      |+|++||++..+..                  .....+  ...++++++++||+|++|+|+|++|+++|+++.|+ .||+
T Consensus       188 ~~V~~~dr~~~~~~------------------~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~-~mk~  248 (351)
T 3jtm_A          188 CNLLYHDRLQMAPE------------------LEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIG-KLKK  248 (351)
T ss_dssp             CEEEEECSSCCCHH------------------HHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHH-HSCT
T ss_pred             CEEEEeCCCccCHH------------------HHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHh-cCCC
Confidence            99999998764311                  111111  23589999999999999999999999999999999 9999


Q ss_pred             CcEEEEccCCCCccC
Q 024297          255 ATYVVFMFQGHGVSF  269 (269)
Q Consensus       255 ga~lIN~~RG~~vde  269 (269)
                      |++|||+|||++|||
T Consensus       249 gailIN~aRG~~vde  263 (351)
T 3jtm_A          249 GVLIVNNARGAIMER  263 (351)
T ss_dssp             TEEEEECSCGGGBCH
T ss_pred             CCEEEECcCchhhCH
Confidence            999999999999986

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=4.9e-45  Score=334.94  Aligned_cols=231  Identities=21%  Similarity=0.239  Sum_probs=192.8

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEeeCC-----CCChhhhcCCceEEEEe--CCCCCHHHHhcCCCceEEEEccc
Q 024297           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP-----ISDVPDVIANYHLCVVK--TMRLDSNCISRANQMKLIMQFGV   85 (269)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~dv~i~~--~~~~~~~~l~~~~~Lk~I~~~~a   85 (269)
                      |||++++........ +.. ++...++++...+     .+++.+.++++|++++.  ..++++++++.+|+||+|+..++
T Consensus         3 mki~~~d~~~~~~~~-~~~-~~~l~~~~v~~~~~~~~~~~~l~~~~~~ad~li~~~~~~~~~~~~l~~~~~Lk~I~~~g~   80 (352)
T 3gg9_A            3 LKIAVLDDYQDAVRK-LDC-FSLLQDHEVKVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQLLDRLPKLKIISQTGR   80 (352)
T ss_dssp             CEEEECCCTTCCGGG-SGG-GGGGTTSEEEECCSCCCSHHHHHHHTTTCSEEEECTTSSCBCHHHHTTCTTCCEEEESSC
T ss_pred             eEEEEEcCccccchh-hhh-hhhhcCceEEEecCCCCCHHHHHHHhcCCeEEEEeCCCCCCCHHHHhhCCCCeEEEEeCc
Confidence            789998875433211 111 1122334544332     34567889999999873  47899999999999999999999


Q ss_pred             cC----CccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC------------ccc
Q 024297           86 GL----EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP------------TGE  149 (269)
Q Consensus        86 G~----d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~------------~~~  149 (269)
                      |+    |++|+++++++||.|+|+||+ .   .+||||+++++|++.|++..+++.++++.|...            .+.
T Consensus        81 G~~~~~d~id~~~a~~~gI~V~n~pg~-~---~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~  156 (352)
T 3gg9_A           81 VSRDAGGHIDLEACTDKGVVVLEGKGS-P---VAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGR  156 (352)
T ss_dssp             CCCSSSCSBCHHHHHHHTCEEECCCCC-S---HHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBC
T ss_pred             ccCCccCcccHHHHHhCCeEEEECCCC-c---HHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCc
Confidence            99    999999999999999999997 4   899999999999999999999999999999752            478


Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCC
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  227 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  227 (269)
                      ++.|+||||||+|.||+.+|+++++|||+|++||++....                   .....+  ...++++++++||
T Consensus       157 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-------------------~~~~~g~~~~~~l~ell~~aD  217 (352)
T 3gg9_A          157 VLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKE-------------------RARADGFAVAESKDALFEQSD  217 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHHH-------------------HHHHTTCEECSSHHHHHHHCS
T ss_pred             cCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCHH-------------------HHHhcCceEeCCHHHHHhhCC
Confidence            9999999999999999999999999999999999864220                   001111  2258999999999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      +|++|+|+|++|+++++++.|+ .||+|++|||+|||++|||
T Consensus       218 iV~l~~Plt~~t~~li~~~~l~-~mk~gailIN~aRg~~vd~  258 (352)
T 3gg9_A          218 VLSVHLRLNDETRSIITVADLT-RMKPTALFVNTSRAELVEE  258 (352)
T ss_dssp             EEEECCCCSTTTTTCBCHHHHT-TSCTTCEEEECSCGGGBCT
T ss_pred             EEEEeccCcHHHHHhhCHHHHh-hCCCCcEEEECCCchhhcH
Confidence            9999999999999999999999 9999999999999999997

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=1.3e-44  Score=330.38  Aligned_cols=232  Identities=16%  Similarity=0.230  Sum_probs=197.5

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEeeC---CCCChhhhcCCceEEEEe-CCCCCHHHHhcCCC--ceEEEEcccc
Q 024297           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV---PISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGVG   86 (269)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~~~--Lk~I~~~~aG   86 (269)
                      |||+++... +....+++.+.+.+|++++...   ..+++.+.++++|+++++ ..++++++++.+|+  ||||++.++|
T Consensus         2 mkil~~~~~-~~~~~~~~~l~~~~p~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G   80 (333)
T 1j4a_A            2 TKIFAYAIR-EDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVG   80 (333)
T ss_dssp             CEEEECSCC-GGGHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSC
T ss_pred             cEEEEEecC-ccCHHHHHHHHhhCCCcEEEECCCCCcHHHHHHhcCCcEEEEcCCCCCCHHHHHhccccCCeEEEECCcc
Confidence            688887543 3333445555566777666543   235667788999998875 46899999999887  9999999999


Q ss_pred             CCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC--CccccccCCEEEEEecCch
Q 024297           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNI  164 (269)
Q Consensus        87 ~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~g~~vgIiG~G~i  164 (269)
                      +|++|+++++++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|.+  ..+.++.|++|||||+|.|
T Consensus        81 ~d~id~~~~~~~gi~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~I  157 (333)
T 1j4a_A           81 VDNIDMAKAKELGFQITNVPVY---SPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHI  157 (333)
T ss_dssp             CTTBCHHHHHHTTCEEECCCCS---CHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHH
T ss_pred             cccccHHHHHhCCCEEEeCCCC---CchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCcccccCCCCEEEEEccCHH
Confidence            9999999999999999999998   7899999999999999999999999999999853  3568999999999999999


Q ss_pred             HHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCC-CCHHHHHhhCCEEEEecCCCccccCcC
Q 024297          165 GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH-EDIFEFASKADVVVCCLSLNKQTVKLC  243 (269)
Q Consensus       165 G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ell~~aDvvv~~lp~t~~t~~li  243 (269)
                      |+.+|+++++|||+|++||++..+.   .             ...    ... .++++++++||+|++|+|++++|++++
T Consensus       158 G~~~A~~l~~~G~~V~~~d~~~~~~---~-------------~~~----~~~~~~l~ell~~aDvV~l~~p~~~~t~~li  217 (333)
T 1j4a_A          158 GQVFMQIMEGFGAKVITYDIFRNPE---L-------------EKK----GYYVDSLDDLYKQADVISLHVPDVPANVHMI  217 (333)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCCHH---H-------------HHT----TCBCSCHHHHHHHCSEEEECSCCCGGGTTCB
T ss_pred             HHHHHHHHHHCCCEEEEECCCcchh---H-------------Hhh----CeecCCHHHHHhhCCEEEEcCCCcHHHHHHH
Confidence            9999999999999999999876441   0             011    122 379999999999999999999999999


Q ss_pred             CHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          244 SSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       244 ~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      +++.|+ .||+|++|||+|||+++||
T Consensus       218 ~~~~l~-~mk~ga~lIn~arg~~vd~  242 (333)
T 1j4a_A          218 NDESIA-KMKQDVVIVNVSRGPLVDT  242 (333)
T ss_dssp             SHHHHH-HSCTTEEEEECSCGGGBCH
T ss_pred             hHHHHh-hCCCCcEEEECCCCcccCH
Confidence            999999 9999999999999999985

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.5e-44  Score=329.85  Aligned_cols=231  Identities=16%  Similarity=0.199  Sum_probs=194.4

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEeeC---CCCChhhhcCCceEEEEe-CCCCCHHHHhcCCC--ceEEEEcccc
Q 024297           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV---PISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGVG   86 (269)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~~~--Lk~I~~~~aG   86 (269)
                      |||+++... +....+++.+.+.+ ++++...   ..+++.+.++++|+++++ ..++++++++.+|+  ||||++.++|
T Consensus         1 Mkil~~~~~-~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G   78 (333)
T 1dxy_A            1 MKIIAYGAR-VDEIQYFKQWAKDT-GNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVG   78 (333)
T ss_dssp             CEEEECSCC-TTTHHHHHHHHHHH-CCEEEECSSCCCTTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSC
T ss_pred             CEEEEEecc-ccCHHHHHHHHHhC-CeEEEEcCCCChHHHHHHhcCCeEEEEcCCCCCCHHHHHhCcccCceEEEEcCcc
Confidence            478876543 22334455554433 3444322   245667778999998875 46899999999887  9999999999


Q ss_pred             CCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCC---CCccccccCCEEEEEecCc
Q 024297           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG---VPTGETLLGKTVFILGFGN  163 (269)
Q Consensus        87 ~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~---~~~~~~l~g~~vgIiG~G~  163 (269)
                      +|++|+++++++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|.   ...+.++.|+||||||+|.
T Consensus        79 ~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~  155 (333)
T 1dxy_A           79 TDNIDMTAMKQYGIRLSNVPAY---SPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGH  155 (333)
T ss_dssp             CTTBCHHHHHHTTCEEECCTTS---CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSH
T ss_pred             cCccCHHHHHhCCCEEEeCCCC---CchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCccCCCCCEEEEECcCH
Confidence            9999999999999999999998   789999999999999999999999999999983   3456899999999999999


Q ss_pred             hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcC
Q 024297          164 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLC  243 (269)
Q Consensus       164 iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li  243 (269)
                      ||+.+|+++++|||+|++||++..+..                ...    ....++++++++||+|++|+|+|++|++++
T Consensus       156 IG~~~A~~l~~~G~~V~~~d~~~~~~~----------------~~~----~~~~~l~ell~~aDvV~~~~P~~~~t~~li  215 (333)
T 1dxy_A          156 IGQVAIKLFKGFGAKVIAYDPYPMKGD----------------HPD----FDYVSLEDLFKQSDVIDLHVPGIEQNTHII  215 (333)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCSSC----------------CTT----CEECCHHHHHHHCSEEEECCCCCGGGTTSB
T ss_pred             HHHHHHHHHHHCCCEEEEECCCcchhh----------------Hhc----cccCCHHHHHhcCCEEEEcCCCchhHHHHh
Confidence            999999999999999999998765420                011    123589999999999999999999999999


Q ss_pred             CHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          244 SSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       244 ~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      +++.|+ .||+|++|||+|||+++||
T Consensus       216 ~~~~l~-~mk~ga~lIn~srg~~vd~  240 (333)
T 1dxy_A          216 NEAAFN-LMKPGAIVINTARPNLIDT  240 (333)
T ss_dssp             CHHHHH-HSCTTEEEEECSCTTSBCH
T ss_pred             CHHHHh-hCCCCcEEEECCCCcccCH
Confidence            999999 9999999999999999985

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=3.6e-45  Score=330.56  Aligned_cols=230  Identities=24%  Similarity=0.326  Sum_probs=193.9

Q ss_pred             cceEEEeCCCCCCchhhHHHHHhcCCCeEEee---CCCCChhhhcCCceEEEEeCC-CCCHHHHhcCCCceEEEEccccC
Q 024297           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGVGL   87 (269)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~dv~i~~~~-~~~~~~l~~~~~Lk~I~~~~aG~   87 (269)
                      +|||+++.+..+   .. .+.+++. ++++..   .+.+++.+.++++|+++++.. +++++.++.+|+||||++.++|+
T Consensus         3 ~~~il~~~~~~~---~~-~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~   77 (307)
T 1wwk_A            3 RMKVLVAAPLHE---KA-IQVLKDA-GLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARAGVGL   77 (307)
T ss_dssp             -CEEEECSCCCH---HH-HHHHHHT-TCEEEECSSCCHHHHHHHSTTCSEEEESSCSCBCHHHHTTCTTCCEEEESSSCC
T ss_pred             ceEEEEeCCCCH---HH-HHHHHhC-CeEEEeCCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCeEEEECCccc
Confidence            478998876422   22 2333332 344432   234556778899999887644 69999999999999999999999


Q ss_pred             CccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC--CccccccCCEEEEEecCchH
Q 024297           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIG  165 (269)
Q Consensus        88 d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~g~~vgIiG~G~iG  165 (269)
                      |++|+++++++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|..  ..+.++.|++|||||+|.||
T Consensus        78 d~id~~~~~~~gi~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG  154 (307)
T 1wwk_A           78 DNIDVEAAKEKGIEVVNAPAA---SSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIG  154 (307)
T ss_dssp             TTBCHHHHHHHTCEEECCGGG---GHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCCCTTCEEEEECCSHHH
T ss_pred             cccCHHHHHhCCcEEEECCCC---ChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCcCCcccCCceEEEEccCHHH
Confidence            999999999999999999998   8899999999999999999999999999999974  45789999999999999999


Q ss_pred             HHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEEEecCCCccccCcCC
Q 024297          166 VELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTVKLCS  244 (269)
Q Consensus       166 ~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~~lp~t~~t~~li~  244 (269)
                      +.+|+++++||++|++||++..+. .                  ....+ ...++++++++||+|++|+|++++|+++++
T Consensus       155 ~~~A~~l~~~G~~V~~~d~~~~~~-~------------------~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~  215 (307)
T 1wwk_A          155 YQVAKIANALGMNILLYDPYPNEE-R------------------AKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLIN  215 (307)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCHH-H------------------HHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBC
T ss_pred             HHHHHHHHHCCCEEEEECCCCChh-h------------------HhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcC
Confidence            999999999999999999876541 0                  00111 234799999999999999999999999999


Q ss_pred             HHHHhhhCCCCcEEEEccCCCCccC
Q 024297          245 SSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       245 ~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      ++.|+ .||+|++|||+|||++|||
T Consensus       216 ~~~l~-~mk~ga~lin~arg~~vd~  239 (307)
T 1wwk_A          216 EERLK-LMKKTAILINTSRGPVVDT  239 (307)
T ss_dssp             HHHHH-HSCTTCEEEECSCGGGBCH
T ss_pred             HHHHh-cCCCCeEEEECCCCcccCH
Confidence            99999 9999999999999999985

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=5.5e-45  Score=335.44  Aligned_cols=194  Identities=18%  Similarity=0.270  Sum_probs=169.2

Q ss_pred             hcCCceEEEEeCCCCCHHHHhcCCCceEEEEc-cccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhc
Q 024297           52 VIANYHLCVVKTMRLDSNCISRANQMKLIMQF-GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK  130 (269)
Q Consensus        52 ~~~~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~-~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~  130 (269)
                      .+.++++++. ..++++++++.+|+||||+.. ++|+|++|+++++++||.|+|+|++   ++.+||||+++++|++.|+
T Consensus        73 ~~~~~~~i~~-~~~i~~~~l~~~p~Lk~I~~~~~~G~d~iD~~~a~~~GI~V~n~~~~---~~~~vAE~~l~l~L~~~R~  148 (365)
T 4hy3_A           73 ILGRARYIIG-QPPLSAETLARMPALRSILNVESNLLNNMPYEVLFQRGIHVVTTGQV---FAEPVAEIGLGFALALARG  148 (365)
T ss_dssp             HHHHEEEEEE-CCCCCHHHHTTCTTCCEEECCSSSCCSCSCTTHHHHSCCEEEECGGG---GHHHHHHHHHHHHHHHHHT
T ss_pred             hhCCeEEEEe-CCCCCHHHHhhCCCCeEEEEecccccCcccHHHHhcCCeEEEeCCCc---cchHHHHHHHHHHHHHHhc
Confidence            4456777764 578999999999999999975 8899999999999999999999998   8899999999999999999


Q ss_pred             HHHHHHHHHhCCC--CC---CccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccc
Q 024297          131 QNEMRMAIEQKKL--GV---PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI  205 (269)
Q Consensus       131 ~~~~~~~~~~~~w--~~---~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (269)
                      +..+++.++++.|  ..   ..+.++.|+||||||+|.||+.+|+++++|||+|++||++....                
T Consensus       149 ~~~~~~~~r~g~~~w~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~~----------------  212 (365)
T 4hy3_A          149 IVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRS----------------  212 (365)
T ss_dssp             TTHHHHHHHHTCCCCSSSSTTSCCCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCHH----------------
T ss_pred             hhHHHHHHHcCCccccccccccccccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCHH----------------
Confidence            9999999999984  32   35689999999999999999999999999999999999875321                


Q ss_pred             ccccccccC-CCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          206 IDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       206 ~~~~~~~~~-~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                         .....+ ...++++++++||+|++|+|+|++|+++++++.|+ .||+|++|||+|||++|||
T Consensus       213 ---~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~-~mk~gailIN~aRG~~vde  273 (365)
T 4hy3_A          213 ---MLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFS-SMRRGAAFILLSRADVVDF  273 (365)
T ss_dssp             ---HHHHTTCEECCHHHHHHSCSEEEECSCSSCC---CCCHHHHH-TSCTTCEEEECSCGGGSCH
T ss_pred             ---HHhhcCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHh-cCCCCcEEEECcCCchhCH
Confidence               111111 34689999999999999999999999999999999 9999999999999999986

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=4e-44  Score=324.56  Aligned_cols=230  Identities=24%  Similarity=0.341  Sum_probs=194.3

Q ss_pred             cceEEEeCCCCCCchhhHHHHHhcCCCeEEee---CCCCChhhhcCCceEEEEe-CCCCCHHHHhcCCCceEEEEccccC
Q 024297           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGL   87 (269)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~   87 (269)
                      +|||+++.+. +.  .. .+.+++. ++++..   .+.+++.+.++++|+++++ ..+++++.++.+|+||||++.++|+
T Consensus         5 ~mkil~~~~~-~~--~~-~~~l~~~-~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~   79 (313)
T 2ekl_A            5 TVKALITDPI-DE--IL-IKTLREK-GIQVDYMPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGL   79 (313)
T ss_dssp             CCEEEECSCC-CH--HH-HHHHHHT-TCEEEECTTCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHCTTCCEEEECSSCC
T ss_pred             ceEEEEECCC-CH--HH-HHHHHhC-CcEEEeCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEEcCCCC
Confidence            3689888763 22  22 2333333 234432   2345667788999998874 4679999999999999999999999


Q ss_pred             CccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHH
Q 024297           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVE  167 (269)
Q Consensus        88 d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~  167 (269)
                      |++|+++++++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|....+.++.|++|||||+|+||+.
T Consensus        80 d~id~~~~~~~gi~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l~g~~vgIIG~G~IG~~  156 (313)
T 2ekl_A           80 DNIDTEEAEKRNIKVVYAPGA---STDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLELAGKTIGIVGFGRIGTK  156 (313)
T ss_dssp             TTBCHHHHHHTTCEEECCTTT---THHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCCCTTCEEEEESCSHHHHH
T ss_pred             CccCHHHHHhCCeEEEeCCCC---CchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCCCCEEEEEeeCHHHHH
Confidence            999999999999999999998   88999999999999999999999999999999765678999999999999999999


Q ss_pred             HHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEEEecCCCccccCcCCHH
Q 024297          168 LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTVKLCSSS  246 (269)
Q Consensus       168 ~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~  246 (269)
                      +|++++++|++|++||++..+. . .                 ...+ ...++++++++||+|++|+|++++|+++++++
T Consensus       157 ~A~~l~~~G~~V~~~d~~~~~~-~-~-----------------~~~g~~~~~l~ell~~aDvVvl~~P~~~~t~~li~~~  217 (313)
T 2ekl_A          157 VGIIANAMGMKVLAYDILDIRE-K-A-----------------EKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYP  217 (313)
T ss_dssp             HHHHHHHTTCEEEEECSSCCHH-H-H-----------------HHTTCEECCHHHHHHHCSEEEECCCCCTTSCCSBCHH
T ss_pred             HHHHHHHCCCEEEEECCCcchh-H-H-----------------HhcCceecCHHHHHhhCCEEEEeccCChHHHHhhCHH
Confidence            9999999999999999876541 0 0                 0111 12489999999999999999999999999999


Q ss_pred             HHhhhCCCCcEEEEccCCCCccC
Q 024297          247 LSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       247 ~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      .|+ .||+|++|||+|||+++||
T Consensus       218 ~l~-~mk~ga~lIn~arg~~vd~  239 (313)
T 2ekl_A          218 QFE-LMKDNVIIVNTSRAVAVNG  239 (313)
T ss_dssp             HHH-HSCTTEEEEESSCGGGBCH
T ss_pred             HHh-cCCCCCEEEECCCCcccCH
Confidence            999 9999999999999999985

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=4.9e-44  Score=326.26  Aligned_cols=231  Identities=17%  Similarity=0.215  Sum_probs=194.9

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEeeC----CCCChhhhcCCceEEEEe-CCCCCHHHHhcCCC--ceEEEEccc
Q 024297           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV----PISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGV   85 (269)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~~~--Lk~I~~~~a   85 (269)
                      |||+++... +.....++.+.+.+ ++++...    +.+++.+.++++|+++++ ..++++++++.+|+  ||||++.++
T Consensus         1 mki~~~~~~-~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~   78 (331)
T 1xdw_A            1 MKVLCYGVR-DVELPIFEACNKEF-GYDIKCVPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRTA   78 (331)
T ss_dssp             CEEEECSCC-TTTHHHHHHHGGGT-CCEEEECSCCSCSHHHHHTTTTCSEEEECTTCCBCHHHHHHHHHHTCCEEEESSS
T ss_pred             CEEEEEecC-ccCHHHHHHHHHhc-CeEEEECCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHhhCcccCceEEEEccc
Confidence            478887543 23334455554544 4454432    235567788999998875 46899999999988  999999999


Q ss_pred             cCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC---CccccccCCEEEEEecC
Q 024297           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGFG  162 (269)
Q Consensus        86 G~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~---~~~~~l~g~~vgIiG~G  162 (269)
                      |+|++|+++++++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|..   ..+.++.|++|||||+|
T Consensus        79 G~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G  155 (331)
T 1xdw_A           79 GTDHIDKEYAKELGFPMAFVPRY---SPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLG  155 (331)
T ss_dssp             CCTTBCHHHHHHTTCCEECCCCC---CHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCCCGGGSEEEEECCS
T ss_pred             cccccCHHHHHhCCcEEEeCCCC---CcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCccCCCCCEEEEECcC
Confidence            99999999999999999999998   7799999999999999999999999999999853   35689999999999999


Q ss_pred             chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCc
Q 024297          163 NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKL  242 (269)
Q Consensus       163 ~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~l  242 (269)
                      .||+.+|+++++|||+|++||++..+..                ...    ....++++++++||+|++|+|+|++|+++
T Consensus       156 ~IG~~~A~~l~~~G~~V~~~d~~~~~~~----------------~~~----~~~~~l~ell~~aDvV~~~~p~t~~t~~l  215 (331)
T 1xdw_A          156 RIGRVAAQIFHGMGATVIGEDVFEIKGI----------------EDY----CTQVSLDEVLEKSDIITIHAPYIKENGAV  215 (331)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCCCSC----------------TTT----CEECCHHHHHHHCSEEEECCCCCTTTCCS
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCccHHH----------------Hhc----cccCCHHHHHhhCCEEEEecCCchHHHHH
Confidence            9999999999999999999998765420                011    12358999999999999999999999999


Q ss_pred             CCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          243 CSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       243 i~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      ++++.|+ .||+|++|||+|||+++||
T Consensus       216 i~~~~l~-~mk~ga~lin~srg~~vd~  241 (331)
T 1xdw_A          216 VTRDFLK-KMKDGAILVNCARGQLVDT  241 (331)
T ss_dssp             BCHHHHH-TSCTTEEEEECSCGGGBCH
T ss_pred             hCHHHHh-hCCCCcEEEECCCcccccH
Confidence            9999999 9999999999999999985

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=1e-43  Score=329.85  Aligned_cols=201  Identities=21%  Similarity=0.262  Sum_probs=179.1

Q ss_pred             CChhhhcCCceEEEEe---CCCCCHHHHhcCCCceEEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHH
Q 024297           47 SDVPDVIANYHLCVVK---TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL  123 (269)
Q Consensus        47 ~~~~~~~~~~dv~i~~---~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~  123 (269)
                      +++.+.++++|++++.   ...++++.++.+|+||||++.++|+|++|+++++++||.|+|+|++   ++.+||||++++
T Consensus        81 ~~l~~~l~~ad~li~~~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~~g~---~~~~VAE~al~l  157 (393)
T 2nac_A           81 SVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYC---NSISVAEHVVMM  157 (393)
T ss_dssp             SHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTT---THHHHHHHHHHH
T ss_pred             HHHHHhccCCCEEEEcCccCCCCCHHHHhhCCCCcEEEEcCccccccCHHHHhcCCEEEEeCCCc---ccHHHHHHHHHH
Confidence            4567889999998874   3479999999999999999999999999999999999999999998   789999999999


Q ss_pred             HHHHhhcHHHHHHHHHhCCCCC----CccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchh
Q 024297          124 MLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL  199 (269)
Q Consensus       124 ~L~~~R~~~~~~~~~~~~~w~~----~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~  199 (269)
                      +|++.|++..+++.++++.|..    ..+.++.|+||||||+|.||+.+|+++++|||+|++||++..+..         
T Consensus       158 iL~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~---------  228 (393)
T 2nac_A          158 ILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES---------  228 (393)
T ss_dssp             HHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHH---------
T ss_pred             HHHHHhccHHHHHHHHcCCCCccccccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchh---------
Confidence            9999999999999999999963    235789999999999999999999999999999999998764411         


Q ss_pred             hhccccccccccccC--CCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          200 AVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       200 ~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                               .....+  ...++++++++||+|++|+|+|++|+++|+++.|+ .||+|++|||+|||.+|||
T Consensus       229 ---------~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~-~mk~gailIN~aRG~~vde  290 (393)
T 2nac_A          229 ---------VEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLK-LFKRGAYIVNTARGKLCDR  290 (393)
T ss_dssp             ---------HHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHT-TSCTTEEEEECSCGGGBCH
T ss_pred             ---------hHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHh-hCCCCCEEEECCCchHhhH
Confidence                     111111  12579999999999999999999999999999999 9999999999999999985

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.1e-43  Score=322.56  Aligned_cols=233  Identities=21%  Similarity=0.264  Sum_probs=193.4

Q ss_pred             cceEEEeCCCCCCchhhHHHHHhcCCCeEEeeC----CCCChhhhcCCceEEEEeC-CCCCHHHHhcCCC-ceEEEEccc
Q 024297           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV----PISDVPDVIANYHLCVVKT-MRLDSNCISRANQ-MKLIMQFGV   85 (269)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~dv~i~~~-~~~~~~~l~~~~~-Lk~I~~~~a   85 (269)
                      |++|++..+. +.  .. .+.+++..++++...    +.+++.+.++++|+++++. .+++++.++.+|+ ||||++.++
T Consensus         1 m~~vl~~~~~-~~--~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~Lk~I~~~~~   76 (320)
T 1gdh_A            1 KKKILITWPL-PE--AA-MARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSI   76 (320)
T ss_dssp             CCEEEESSCC-CH--HH-HHHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESS
T ss_pred             CcEEEEcCCC-CH--HH-HHHHHhcCCEEEecCCCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHHhCCccceEEEECCc
Confidence            3678887654 22  22 334444334444322    2345677889999988765 5899999999999 999999999


Q ss_pred             cCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC-----CccccccCCEEEEEe
Q 024297           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKTVFILG  160 (269)
Q Consensus        86 G~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~g~~vgIiG  160 (269)
                      |+|++|+++++++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|..     ..+.++.|++|||||
T Consensus        77 G~d~id~~~~~~~gi~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG  153 (320)
T 1gdh_A           77 GFDHIDLDACKARGIKVGNAPHG---VTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYG  153 (320)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCS---CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEEC
T ss_pred             ccccccHHHHHhCCcEEEEcCCC---CHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEEC
Confidence            99999999999999999999998   8899999999999999999999999999999962     246799999999999


Q ss_pred             cCchHHHHHHHhccCCCEEEEEcC-CCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccc
Q 024297          161 FGNIGVELAKRLRPFGVKIIATKR-SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT  239 (269)
Q Consensus       161 ~G~iG~~~a~~l~~~G~~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t  239 (269)
                      +|.||+.+|+++++||++|++||+ +..+. ...             .....   ...++++++++||+|++|+|++++|
T Consensus       154 ~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~-------------~~g~~---~~~~l~ell~~aDvVil~~p~~~~t  216 (320)
T 1gdh_A          154 FGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEA-------------SYQAT---FHDSLDSLLSVSQFFSLNAPSTPET  216 (320)
T ss_dssp             CSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHH-------------HHTCE---ECSSHHHHHHHCSEEEECCCCCTTT
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhh-------------hcCcE---EcCCHHHHHhhCCEEEEeccCchHH
Confidence            999999999999999999999998 76431 000             00010   1237999999999999999999999


Q ss_pred             cCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          240 VKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       240 ~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      +++++++.|+ .||+|++|||+|||.++||
T Consensus       217 ~~~i~~~~l~-~mk~gailIn~arg~~vd~  245 (320)
T 1gdh_A          217 RYFFNKATIK-SLPQGAIVVNTARGDLVDN  245 (320)
T ss_dssp             TTCBSHHHHT-TSCTTEEEEECSCGGGBCH
T ss_pred             HhhcCHHHHh-hCCCCcEEEECCCCcccCH
Confidence            9999999999 9999999999999999984

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=8.4e-44  Score=322.12  Aligned_cols=227  Identities=24%  Similarity=0.282  Sum_probs=192.1

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEee---CCCCChhhhcCCceEEEEeC-CCCCHHHHhcCCCceEEEEccccCC
Q 024297           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLE   88 (269)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~dv~i~~~-~~~~~~~l~~~~~Lk~I~~~~aG~d   88 (269)
                      |||+++.+..++..   +.+.+...++++..   .+.+++.+.++++|+++++. .+++++.++.+|+||||++.++|+|
T Consensus         1 ~~vl~~~~~~~~~~---~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d   77 (311)
T 2cuk_A            1 MRVLVTRTLPGKAL---DRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVD   77 (311)
T ss_dssp             CEEEESSCCSSSTT---HHHHHTTCEEEECCSSCCCHHHHHHHHTTCSEEECCTTSCBCHHHHHHSTTCCEEECSSSCCT
T ss_pred             CEEEEeCCCCHHHH---HHHHhcCCeEEEecCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEECCcCcc
Confidence            57888776533322   22222212333322   13355677889999988754 4799999999999999999999999


Q ss_pred             ccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC-----CccccccCCEEEEEecCc
Q 024297           89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKTVFILGFGN  163 (269)
Q Consensus        89 ~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~g~~vgIiG~G~  163 (269)
                      ++|+++++++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|..     ..+.++.|++|||||+|.
T Consensus        78 ~id~~~~~~~gi~v~n~~~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~  154 (311)
T 2cuk_A           78 HVDLEAARERGIRVTHTPGV---LTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGR  154 (311)
T ss_dssp             TBCHHHHHTTTCEEECCCST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSH
T ss_pred             ccCHHHHHhCCcEEEECCCC---ChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECH
Confidence            99999999999999999998   8899999999999999999999999999999963     236799999999999999


Q ss_pred             hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcC
Q 024297          164 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLC  243 (269)
Q Consensus       164 iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li  243 (269)
                      ||+.+|+++++||++|++||++..+.                  .     ....++++++++||+|++|+|++++|++++
T Consensus       155 IG~~~A~~l~~~G~~V~~~d~~~~~~------------------~-----~~~~~l~ell~~aDvV~l~~p~~~~t~~li  211 (311)
T 2cuk_A          155 IGQAVAKRALAFGMRVVYHARTPKPL------------------P-----YPFLSLEELLKEADVVSLHTPLTPETHRLL  211 (311)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCSS------------------S-----SCBCCHHHHHHHCSEEEECCCCCTTTTTCB
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCccc------------------c-----cccCCHHHHHhhCCEEEEeCCCChHHHhhc
Confidence            99999999999999999999976541                  1     124689999999999999999999999999


Q ss_pred             CHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          244 SSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       244 ~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      +++.|+ .||+|++|||+|||.++||
T Consensus       212 ~~~~l~-~mk~ga~lin~srg~~vd~  236 (311)
T 2cuk_A          212 NRERLF-AMKRGAILLNTARGALVDT  236 (311)
T ss_dssp             CHHHHT-TSCTTCEEEECSCGGGBCH
T ss_pred             CHHHHh-hCCCCcEEEECCCCCccCH
Confidence            999999 9999999999999999985

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=1.3e-42  Score=318.39  Aligned_cols=234  Identities=17%  Similarity=0.266  Sum_probs=190.1

Q ss_pred             CCcceEEEeCCCCCCchhhHHHHHhcCCCeEEee-CCCCChhhh-cCCceEEEEe-CCCCCHHHHhcCCCceEEEEcccc
Q 024297           10 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPDV-IANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVG   86 (269)
Q Consensus        10 ~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~dv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG   86 (269)
                      +.+++|++++..... .  ..+.++....+.... .+.+++.+. +.++|+++++ ..+++++.++.+|+||||++.++|
T Consensus        19 ~~kp~i~~l~~~~~~-~--~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G   95 (347)
T 1mx3_A           19 SHMPLVALLDGRDCT-V--EMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSG   95 (347)
T ss_dssp             --CCEEEESSCSCCT-T--THHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSC
T ss_pred             CCCCEEEEEcCCcch-h--hHHHhhccceEEecCCCCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhCCCCCEEEEcccc
Confidence            457889888763221 1  133444433333222 234455554 3677876654 568999999999999999999999


Q ss_pred             CCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC---------ccccccCCEEE
Q 024297           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---------TGETLLGKTVF  157 (269)
Q Consensus        87 ~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~---------~~~~l~g~~vg  157 (269)
                      +|++|+++++++||.|+|+||+   ++.+|||++++++|++.|++..+++.++++.|...         .+.++.|+|||
T Consensus        96 ~d~id~~~~~~~gI~V~n~~~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tvG  172 (347)
T 1mx3_A           96 FDNIDIKSAGDLGIAVCNVPAA---SVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLG  172 (347)
T ss_dssp             CTTBCHHHHHHTTCEEECCCST---THHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEE
T ss_pred             cCcccHHHHHhCCceEEECCCC---CHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEEE
Confidence            9999999999999999999998   78999999999999999999999999999999642         12589999999


Q ss_pred             EEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEEecCC
Q 024297          158 ILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSL  235 (269)
Q Consensus       158 IiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~~lp~  235 (269)
                      |||+|+||+.+|++|++|||+|++||++..+...                   ...+  ...++++++++||+|++|+|+
T Consensus       173 IIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~-------------------~~~g~~~~~~l~ell~~aDvV~l~~P~  233 (347)
T 1mx3_A          173 IIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVE-------------------RALGLQRVSTLQDLLFHSDCVTLHCGL  233 (347)
T ss_dssp             EECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHH-------------------HHHTCEECSSHHHHHHHCSEEEECCCC
T ss_pred             EEeECHHHHHHHHHHHHCCCEEEEECCCcchhhH-------------------hhcCCeecCCHHHHHhcCCEEEEcCCC
Confidence            9999999999999999999999999987643110                   0111  124799999999999999999


Q ss_pred             CccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          236 NKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       236 t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      +++|+++++++.|+ .||+|++|||+|||+++||
T Consensus       234 t~~t~~li~~~~l~-~mk~gailIN~arg~~vd~  266 (347)
T 1mx3_A          234 NEHNHHLINDFTVK-QMRQGAFLVNTARGGLVDE  266 (347)
T ss_dssp             CTTCTTSBSHHHHT-TSCTTEEEEECSCTTSBCH
T ss_pred             CHHHHHHhHHHHHh-cCCCCCEEEECCCChHHhH
Confidence            99999999999999 9999999999999999985

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=2.3e-43  Score=325.46  Aligned_cols=202  Identities=24%  Similarity=0.315  Sum_probs=179.4

Q ss_pred             CCChhhhcCCceEEEEeC---CCCCHHHHhcCCCceEEEEccccCCccchhhHhcC--CcEEEecCCCCCCCcchHHHHH
Q 024297           46 ISDVPDVIANYHLCVVKT---MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRC--GIKVARIPGDVTGNAASCAELT  120 (269)
Q Consensus        46 ~~~~~~~~~~~dv~i~~~---~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~--gI~v~n~~~~~~~~~~~vAE~~  120 (269)
                      .+++.+.++++|++++..   ..+++++++.+|+||||++.++|+|++|+++++++  ||.|+|+||+   ++.+||||+
T Consensus        51 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~~~gI~V~n~pg~---~~~~vAE~~  127 (364)
T 2j6i_A           51 NSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGS---NVVSVAEHV  127 (364)
T ss_dssp             TSHHHHHGGGCSEEEECTTSCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHHTCCCEEEECTTS---SHHHHHHHH
T ss_pred             HHHHHHHhhCCeEEEecCcCCCCCCHHHHhhCCCCeEEEECCcccccccHHHHHhcCCCEEEEECCCc---CcHHHHHHH
Confidence            356778889999988743   35899999999999999999999999999999999  9999999998   889999999


Q ss_pred             HHHHHHHhhcHHHHHHHHHhCCCCC----CccccccCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCCCccccccc
Q 024297          121 IYLMLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQ  195 (269)
Q Consensus       121 l~~~L~~~R~~~~~~~~~~~~~w~~----~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~  195 (269)
                      ++++|++.|++..+++.++++.|..    ..+.++.|+||||||+|+||+.+|++|++|||+ |++||++..+..     
T Consensus       128 ~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~-----  202 (364)
T 2j6i_A          128 VMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKD-----  202 (364)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHH-----
T ss_pred             HHHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchh-----
Confidence            9999999999999999999999973    246799999999999999999999999999997 999998764421     


Q ss_pred             cchhhhccccccccccccC--CCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          196 SSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                                   .....+  ...++++++++||+|++|+|+|++|+++++++.|+ .||+|++|||+|||++|||
T Consensus       203 -------------~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~-~mk~ga~lIn~arG~~vd~  264 (364)
T 2j6i_A          203 -------------AEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLS-KFKKGAWLVNTARGAICVA  264 (364)
T ss_dssp             -------------HHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHT-TSCTTEEEEECSCGGGBCH
T ss_pred             -------------HHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHh-hCCCCCEEEECCCCchhCH
Confidence                         111111  12589999999999999999999999999999999 9999999999999999985

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=1.4e-42  Score=316.69  Aligned_cols=235  Identities=21%  Similarity=0.274  Sum_probs=191.2

Q ss_pred             CCCCCCcceEEEeCCCCCCchhhHHHHHhcCCCeEEee--CCCCC-hhhhcCCceEEEEe-CCCCCHHHHhcCCCceEEE
Q 024297            6 RSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV--VPISD-VPDVIANYHLCVVK-TMRLDSNCISRANQMKLIM   81 (269)
Q Consensus         6 ~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~dv~i~~-~~~~~~~~l~~~~~Lk~I~   81 (269)
                      ..+.|++++|+++.+..+   ...+.+.+.+ .+....  .+.++ +.+.++++|++++. ..+++++.++.+|+||||+
T Consensus        17 ~~~~m~~~~vl~~~~~~~---~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~   92 (333)
T 3ba1_A           17 RGSHMEAIGVLMMCPMST---YLEQELDKRF-KLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLEIVS   92 (333)
T ss_dssp             -----CCCEEEECSCCCH---HHHHHHHHHS-EEEEGGGCSSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHCTTCCEEE
T ss_pred             ccccCCCCEEEEeCCCCH---HHHHHHHhcC-CEEEecCCCChHHHHHHHhCCCEEEEEcCCCCCCHHHHhhCCCCcEEE
Confidence            445566678998876422   2233333333 222211  11122 44567899988874 4689999999999999999


Q ss_pred             EccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC---CccccccCCEEEE
Q 024297           82 QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFI  158 (269)
Q Consensus        82 ~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~---~~~~~l~g~~vgI  158 (269)
                      +.++|+|++|+++++++||.|+|+||+   ++.+|||++++++|++.|++..+++.++++.|..   ..+.++.|++|||
T Consensus        93 ~~~~G~d~id~~~~~~~gI~v~n~pg~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgI  169 (333)
T 3ba1_A           93 SFSVGLDKVDLIKCEEKGVRVTNTPDV---LTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGI  169 (333)
T ss_dssp             ESSSCCTTBCHHHHHHHTCEEECCCST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGCCCCCCCCCTTCCEEE
T ss_pred             EcCccccccCHHHHHhCCcEEEECCCc---chHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccCCCEEEE
Confidence            999999999999999999999999998   8899999999999999999999999999999963   2467999999999


Q ss_pred             EecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCcc
Q 024297          159 LGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ  238 (269)
Q Consensus       159 iG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~  238 (269)
                      ||+|+||+++|++++++|++|++||++..+.                  ....   ...++++++++||+|++|+|++++
T Consensus       170 IG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~------------------~g~~---~~~~l~ell~~aDvVil~vP~~~~  228 (333)
T 3ba1_A          170 IGLGRIGLAVAERAEAFDCPISYFSRSKKPN------------------TNYT---YYGSVVELASNSDILVVACPLTPE  228 (333)
T ss_dssp             ECCSHHHHHHHHHHHTTTCCEEEECSSCCTT------------------CCSE---EESCHHHHHHTCSEEEECSCCCGG
T ss_pred             ECCCHHHHHHHHHHHHCCCEEEEECCCchhc------------------cCce---ecCCHHHHHhcCCEEEEecCCChH
Confidence            9999999999999999999999999876541                  0010   135799999999999999999999


Q ss_pred             ccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          239 TVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       239 t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      |+++++++.++ .||+|++|||++||.++|+
T Consensus       229 t~~li~~~~l~-~mk~gailIn~srG~~vd~  258 (333)
T 3ba1_A          229 TTHIINREVID-ALGPKGVLINIGRGPHVDE  258 (333)
T ss_dssp             GTTCBCHHHHH-HHCTTCEEEECSCGGGBCH
T ss_pred             HHHHhhHHHHh-cCCCCCEEEECCCCchhCH
Confidence            99999999999 9999999999999999874

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=1.3e-42  Score=318.84  Aligned_cols=237  Identities=17%  Similarity=0.258  Sum_probs=191.0

Q ss_pred             cceEEEeCCCCCCchhhHHHHHhcCCCeEEe-eCCCCChhhhcC-----CceEEEEe-------CCCCCHHHHhcCC-Cc
Q 024297           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVD-VVPISDVPDVIA-----NYHLCVVK-------TMRLDSNCISRAN-QM   77 (269)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~dv~i~~-------~~~~~~~~l~~~~-~L   77 (269)
                      +++|+++.+..+......+.+.+.+ ++... ..+.+++.+.++     ++|+++..       ..++++++++.+| +|
T Consensus         3 ~~~vl~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~L   81 (348)
T 2w2k_A            3 RPRVLLLGDPARHLDDLWSDFQQKF-EVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPSSL   81 (348)
T ss_dssp             CCEEEECSSCCSSCHHHHHHHHHHS-EEEECCCCCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTSCTTC
T ss_pred             CcEEEEECCccccChHHHHHHHhcc-eEEecCCCCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHhcccCc
Confidence            5789998873332222233332322 22222 124456666666     78887763       3589999999998 69


Q ss_pred             eEEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCC---CCC------Ccc
Q 024297           78 KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK---LGV------PTG  148 (269)
Q Consensus        78 k~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~---w~~------~~~  148 (269)
                      |||++.++|+|++|+++++++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.   |..      ..+
T Consensus        82 k~I~~~~~G~d~id~~~~~~~gI~v~n~p~~---~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~  158 (348)
T 2w2k_A           82 KVFAAAGAGFDWLDLDALNERGVAFANSRGA---GDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSA  158 (348)
T ss_dssp             CEEEESSSCCTTBCHHHHHHTTCEEECCTTT---THHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTC
T ss_pred             eEEEECCccccccCHHHHHhCCcEEEECCCC---CcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccccccC
Confidence            9999999999999999999999999999998   7899999999999999999999999999999   932      346


Q ss_pred             ccccCCEEEEEecCchHHHHHHHhc-cCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      .++.|++|||||+|.||+.+|++++ +|||+|++||++..+.....             .....   ...++++++++||
T Consensus       159 ~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~-------------~~g~~---~~~~l~ell~~aD  222 (348)
T 2w2k_A          159 HNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEK-------------ALGAE---RVDSLEELARRSD  222 (348)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHH-------------HHTCE---ECSSHHHHHHHCS
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHh-------------hcCcE---EeCCHHHHhccCC
Confidence            7999999999999999999999999 99999999998765411100             00000   1247999999999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      +|++|+|++++|+++++++.++ .||+|++|||++||+++||
T Consensus       223 vVil~vp~~~~t~~li~~~~l~-~mk~gailin~srg~~vd~  263 (348)
T 2w2k_A          223 CVSVSVPYMKLTHHLIDEAFFA-AMKPGSRIVNTARGPVISQ  263 (348)
T ss_dssp             EEEECCCCSGGGTTCBCHHHHH-HSCTTEEEEECSCGGGBCH
T ss_pred             EEEEeCCCChHHHHHhhHHHHh-cCCCCCEEEECCCCchhCH
Confidence            9999999999999999999999 9999999999999999874

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=3.9e-42  Score=317.32  Aligned_cols=211  Identities=21%  Similarity=0.323  Sum_probs=178.3

Q ss_pred             CcceEEEeCCCCCCchhhHHHHHhcCCCeEEeeCCCCChhhhcCCceEEEEeC-CCCCHHHHhcCCCceEEEEccccCCc
Q 024297           11 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEG   89 (269)
Q Consensus        11 ~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~i~~~-~~~~~~~l~~~~~Lk~I~~~~aG~d~   89 (269)
                      +||||++.... +    +..++++.+.++.+.. ..+...+.++++|+++++. +++++++++ .++||||++.++|+|+
T Consensus         2 ~mmkIl~~~~~-p----~~~~~~~~~~~v~~~~-~~~~~~~~l~~ad~li~~~~~~v~~~ll~-~~~Lk~I~~~~~G~D~   74 (381)
T 3oet_A            2 NAMKILVDENM-P----YARELFSRLGEVKAVP-GRPIPVEELNHADALMVRSVTKVNESLLS-GTPINFVGTATAGTDH   74 (381)
T ss_dssp             CCCEEEEETTS-T----THHHHHTTSSEEEEEC-C---CHHHHTTCSEEEECTTSCBSHHHHT-TSCCCEEEESSSCCTT
T ss_pred             CceEEEECCCC-c----HHHHHHhhCCcEEEeC-CCCCCHHHHCCCEEEEECCCCCCCHHHHc-CCCCEEEEEccccccc
Confidence            56899997764 3    2456777765444322 2223356689999998864 679999999 6789999999999999


Q ss_pred             cchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHH
Q 024297           90 VDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELA  169 (269)
Q Consensus        90 id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a  169 (269)
                      +|+++++++||.|+|+||+   |+.+||||+++++|++.|+.                +.++.|+||||||+|+||+.+|
T Consensus        75 iD~~~~~~~gI~v~n~pg~---~~~~VAE~~l~~lL~l~r~~----------------g~~l~gktvGIIGlG~IG~~vA  135 (381)
T 3oet_A           75 VDEAWLKQAGIGFSAAPGC---NAIAVVEYVFSALLMLAERD----------------GFSLRDRTIGIVGVGNVGSRLQ  135 (381)
T ss_dssp             BCHHHHHHTTCEEECCTTT---THHHHHHHHHHHHHHHHHHT----------------TCCGGGCEEEEECCSHHHHHHH
T ss_pred             cCHHHHHhCCEEEEECCCc---CcchhHHHHHHHHHHHHHhc----------------CCccCCCEEEEEeECHHHHHHH
Confidence            9999999999999999998   88999999999999999863                4789999999999999999999


Q ss_pred             HHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCcc----ccCcCCH
Q 024297          170 KRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ----TVKLCSS  245 (269)
Q Consensus       170 ~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~----t~~li~~  245 (269)
                      ++|++|||+|++||++....                  .   ......++++++++||+|++|+|+|++    |++++++
T Consensus       136 ~~l~a~G~~V~~~d~~~~~~------------------~---~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~  194 (381)
T 3oet_A          136 TRLEALGIRTLLCDPPRAAR------------------G---DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADE  194 (381)
T ss_dssp             HHHHHTTCEEEEECHHHHHT------------------T---CCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCH
T ss_pred             HHHHHCCCEEEEECCChHHh------------------c---cCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCH
Confidence            99999999999999743210                  0   111357899999999999999999999    9999999


Q ss_pred             HHHhhhCCCCcEEEEccCCCCccC
Q 024297          246 SLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       246 ~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      +.|+ .||+|++|||+|||++|||
T Consensus       195 ~~l~-~mk~gailIN~aRG~vvde  217 (381)
T 3oet_A          195 TLIR-RLKPGAILINACRGPVVDN  217 (381)
T ss_dssp             HHHH-HSCTTEEEEECSCGGGBCH
T ss_pred             HHHh-cCCCCcEEEECCCCcccCH
Confidence            9999 9999999999999999986

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=3e-41  Score=307.77  Aligned_cols=233  Identities=23%  Similarity=0.313  Sum_probs=192.2

Q ss_pred             CcceEEEeCCCCCCchhhHHHHHhcCCCeEEeeC------CCCChhhhcCCceEEEEe-CCCCCHHHHhcC-CCceEEEE
Q 024297           11 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV------PISDVPDVIANYHLCVVK-TMRLDSNCISRA-NQMKLIMQ   82 (269)
Q Consensus        11 ~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~-~~Lk~I~~   82 (269)
                      .+|+|++..+. ++  ... +.++...++++...      +.+++.+.++++|+++++ ..++++++++.+ |+||||++
T Consensus         7 ~~~~il~~~~~-~~--~~~-~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~Lk~I~~   82 (330)
T 2gcg_A            7 RLMKVFVTRRI-PA--EGR-VALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVIST   82 (330)
T ss_dssp             CCEEEEESSCC-CH--HHH-HHHHHCTTEEEEECCSSSCCCHHHHHHHHTTCSEEEECTTSCBCHHHHHHHCTTCCEEEE
T ss_pred             CCCEEEEECCC-CH--HHH-HHHHhcCCceEEEecCCCCCCHHHHHHHhcCCeEEEECCCCCCCHHHHHhcCCCceEEEE
Confidence            35788887653 21  223 33333223444332      224566778899998874 468999999998 99999999


Q ss_pred             ccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC-----CccccccCCEEE
Q 024297           83 FGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKTVF  157 (269)
Q Consensus        83 ~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~g~~vg  157 (269)
                      .++|+|++|+++++++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|..     ..+.++.|++||
T Consensus        83 ~~~G~d~id~~~~~~~gi~v~n~~~~---~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vg  159 (330)
T 2gcg_A           83 MSVGIDHLALDEIKKRGIRVGYTPDV---LTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVG  159 (330)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCCST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEE
T ss_pred             CCcccccccHHHHHhCCceEEeCCCC---ChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEE
Confidence            99999999999999999999999998   8899999999999999999999999999999963     235789999999


Q ss_pred             EEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEEEecCCC
Q 024297          158 ILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLN  236 (269)
Q Consensus       158 IiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~~lp~t  236 (269)
                      |||+|.||+.+|+.++++|++|++||++..+...                  ....+ ...++++++++||+|++|+|.+
T Consensus       160 IIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~------------------~~~~g~~~~~l~e~l~~aDvVi~~vp~~  221 (330)
T 2gcg_A          160 IIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEE------------------AAEFQAEFVSTPELAAQSDFIVVACSLT  221 (330)
T ss_dssp             EECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHH------------------HHTTTCEECCHHHHHHHCSEEEECCCCC
T ss_pred             EECcCHHHHHHHHHHHHCCCEEEEECCCCcchhH------------------HHhcCceeCCHHHHHhhCCEEEEeCCCC
Confidence            9999999999999999999999999987643110                  01111 1237999999999999999999


Q ss_pred             ccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          237 KQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       237 ~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      ++|+++++++.++ .||+|++|||++||+++|+
T Consensus       222 ~~t~~~i~~~~~~-~mk~gailIn~srg~~v~~  253 (330)
T 2gcg_A          222 PATEGLCNKDFFQ-KMKETAVFINISRGDVVNQ  253 (330)
T ss_dssp             TTTTTCBSHHHHH-HSCTTCEEEECSCGGGBCH
T ss_pred             hHHHHhhCHHHHh-cCCCCcEEEECCCCcccCH
Confidence            9999999999999 9999999999999999874

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=4.9e-42  Score=309.44  Aligned_cols=190  Identities=21%  Similarity=0.275  Sum_probs=170.5

Q ss_pred             hhcCCceEEEEeCCCCCHHHHhcCCCceEEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhc
Q 024297           51 DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK  130 (269)
Q Consensus        51 ~~~~~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~  130 (269)
                      +.++++|+++++  ..+++.++.+|+||||++.++|+|++|++++ ++||.|+|+||+   ++.+||||+++++|++.|+
T Consensus        27 ~~~~~~d~~i~~--~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~-~~gi~v~~~~~~---~~~~vAE~~~~~~L~~~R~  100 (303)
T 1qp8_A           27 GDLGNVEAALVS--RITAEELAKMPRLKFIQVVTAGLDHLPWESI-PPHVTVAGNAGS---NADAVAEFALALLLAPYKR  100 (303)
T ss_dssp             SCCTTBCCCCBS--CCCHHHHHHCTTCCCEEBSSSCCTTSCCTTS-CTTSCEECCCSS---SHHHHHHHHHHHHHHHHTT
T ss_pred             hhhCCCEEEEEC--CCCHHHHhhCCCCcEEEECCcCcccccHHHH-hcCCEEEECCCC---CchHHHHHHHHHHHHHHhC
Confidence            457899988763  4678999999999999999999999999884 799999999998   7899999999999999999


Q ss_pred             HHHHHHHHHhCCCCCC-ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccc
Q 024297          131 QNEMRMAIEQKKLGVP-TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL  209 (269)
Q Consensus       131 ~~~~~~~~~~~~w~~~-~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (269)
                      +..+++.++++.|... .+.++.|+||||||+|.||+.+|++|++|||+|++|+|+...                  .  
T Consensus       101 ~~~~~~~~~~g~w~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~~------------------~--  160 (303)
T 1qp8_A          101 IIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE------------------G--  160 (303)
T ss_dssp             HHHHHHHHHTTCCCCCSCCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC------------------S--
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCccc------------------c--
Confidence            9999999999999754 445899999999999999999999999999999999987641                  0  


Q ss_pred             ccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          210 VDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       210 ~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                        ......++++++++||+|++|+|++++|+++++++.|+ .||+|++|||+|||+++||
T Consensus       161 --~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~-~mk~gailin~srg~~vd~  217 (303)
T 1qp8_A          161 --PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLA-LMAEDAVFVNVGRAEVLDR  217 (303)
T ss_dssp             --SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHT-TSCTTCEEEECSCGGGBCH
T ss_pred             --CcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHh-hCCCCCEEEECCCCcccCH
Confidence              01123678999999999999999999999999999999 9999999999999999985

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=2e-41  Score=309.47  Aligned_cols=231  Identities=21%  Similarity=0.294  Sum_probs=191.0

Q ss_pred             cceEEEeCCCCCCchhhHHHHHhcCCCeEEeeC----CCCChhhhcCCceEEEEeC-CCCCHHHHhcCCCceEEEEcccc
Q 024297           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV----PISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVG   86 (269)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~dv~i~~~-~~~~~~~l~~~~~Lk~I~~~~aG   86 (269)
                      |++|++..+. +  .... +.+++..++++...    +.+++.+.++++|+++++. .+++++.++.+|+||||++.++|
T Consensus         2 ~~~il~~~~~-~--~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G   77 (334)
T 2dbq_A            2 KPKVFITREI-P--EVGI-KMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVG   77 (334)
T ss_dssp             CCEEEESSCC-C--HHHH-HHHHTTSEEEECCCSSCCCHHHHHHHTTSCSEEEECTTSCBCHHHHHTCTTCCEEEESSSC
T ss_pred             CcEEEEecCC-C--HHHH-HHHHhcCCEEEecCCCCCCHHHHHHHhcCcEEEEEcCCCCCCHHHHhhCCCceEEEECCcc
Confidence            3588887553 2  1222 33333323333221    2345667789999988754 57999999999999999999999


Q ss_pred             CCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCC----C-----CccccccCCEEE
Q 024297           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG----V-----PTGETLLGKTVF  157 (269)
Q Consensus        87 ~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~----~-----~~~~~l~g~~vg  157 (269)
                      +|++|+++++++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|.    .     ..+.++.|++||
T Consensus        78 ~d~id~~~~~~~gi~v~n~~~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vg  154 (334)
T 2dbq_A           78 YDNIDIEEATKRGIYVTNTPDV---LTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIG  154 (334)
T ss_dssp             CTTBCHHHHHHTTCEEECCCST---THHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEE
T ss_pred             cccccHHHHHhCCCEEEeCCCc---CHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEE
Confidence            9999999999999999999998   889999999999999999999999999999995    1     136789999999


Q ss_pred             EEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEEEecCCC
Q 024297          158 ILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLN  236 (269)
Q Consensus       158 IiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~~lp~t  236 (269)
                      |||+|.||+.+|++++++|++|++||++..+ .. .                 ...+ ...++++++++||+|++|+|.+
T Consensus       155 IIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~-~-----------------~~~g~~~~~l~~~l~~aDvVil~vp~~  215 (334)
T 2dbq_A          155 IIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EV-E-----------------RELNAEFKPLEDLLRESDFVVLAVPLT  215 (334)
T ss_dssp             EECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HH-H-----------------HHHCCEECCHHHHHHHCSEEEECCCCC
T ss_pred             EEccCHHHHHHHHHHHhCCCEEEEECCCcch-hh-H-----------------hhcCcccCCHHHHHhhCCEEEECCCCC
Confidence            9999999999999999999999999987644 11 0                 0001 2357999999999999999999


Q ss_pred             ccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          237 KQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       237 ~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      ++|+++++++.++ .||+|++|||++||.++||
T Consensus       216 ~~t~~~i~~~~~~-~mk~~ailIn~srg~~v~~  247 (334)
T 2dbq_A          216 RETYHLINEERLK-LMKKTAILINIARGKVVDT  247 (334)
T ss_dssp             TTTTTCBCHHHHH-HSCTTCEEEECSCGGGBCH
T ss_pred             hHHHHhhCHHHHh-cCCCCcEEEECCCCcccCH
Confidence            9999999998999 9999999999999999884

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=1.2e-41  Score=304.75  Aligned_cols=187  Identities=21%  Similarity=0.263  Sum_probs=165.8

Q ss_pred             hhcCCceEEEEeCCCCCHHHHhcCCCceEEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhc
Q 024297           51 DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK  130 (269)
Q Consensus        51 ~~~~~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~  130 (269)
                      +.++++|++++....+      .+|+||||++.++|+|++|++++++++|.++|. +.   ++.+||||+++++|++.|+
T Consensus        30 ~~~~~ad~li~~~~~~------~~~~Lk~I~~~~~G~d~id~~~~~~~~~~~~~~-~~---~~~~vAE~~~~~~L~~~R~   99 (290)
T 3gvx_A           30 PDYYDAEAQVIKDRYV------LGKRTKMIQAISAGVDHIDVNGIPENVVLCSNA-GA---YSISVAEHAFALLLAHAKN   99 (290)
T ss_dssp             TSCCCCSEEEESSCCC------CCSSCCEEEECSSCCTTSCGGGSCTTSEEECCH-HH---HHHHHHHHHHHHHHHHHTT
T ss_pred             cchhhhhhhhhhhhhh------hhhhhHHHHHHhcCCceeecCCCccceEEeecC-Cc---ceeeHHHHHHHHHHHHHHh
Confidence            6678999988743332      689999999999999999999999877766664 55   7899999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccc
Q 024297          131 QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV  210 (269)
Q Consensus       131 ~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (269)
                      +..+++.++++.|.....+++.|+||||||+|.||+.+|++|++|||+|++|||+..+..                  ..
T Consensus       100 ~~~~~~~~~~g~w~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~------------------~~  161 (290)
T 3gvx_A          100 ILENNELMKAGIFRQSPTTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQN------------------VD  161 (290)
T ss_dssp             HHHHHHHHHTTCCCCCCCCCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTT------------------CS
T ss_pred             hhhhhhHhhhcccccCCceeeecchheeeccCchhHHHHHHHHhhCcEEEEEeccccccc------------------cc
Confidence            999999999999987666889999999999999999999999999999999999865421                  11


Q ss_pred             cccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          211 DEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       211 ~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      .   ...++++++++||+|++|+|+|++|+++++++.|+ .||+|++|||+|||+++||
T Consensus       162 ~---~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~-~mk~gailIN~aRG~~vd~  216 (290)
T 3gvx_A          162 V---ISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLA-NARKNLTIVNVARADVVSK  216 (290)
T ss_dssp             E---ECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHT-TCCTTCEEEECSCGGGBCH
T ss_pred             c---ccCChHHHhhccCeEEEEeeccccchhhhhHHHHh-hhhcCceEEEeehhcccCC
Confidence            1   23589999999999999999999999999999999 9999999999999999985

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.6e-41  Score=309.83  Aligned_cols=230  Identities=27%  Similarity=0.364  Sum_probs=190.7

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEee-CCCCChhhhcCCceEEEEe-CCCCCHHHHhcCCCceEEEEccccCCcc
Q 024297           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGV   90 (269)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~d~i   90 (269)
                      ++|+++.+. +.  .. .+.+++..++++.. .+.+++.+.++++|+++++ ..++++++++.+|+||||++.++|+|++
T Consensus         3 ~~il~~~~~-~~--~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   78 (333)
T 2d0i_A            3 PKVGVLLKM-KR--EA-LEELKKYADVEIILYPSGEELKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNI   78 (333)
T ss_dssp             SEEEECSCC-CH--HH-HHHHHTTSEEEECCSCCHHHHHHHGGGCSEEEECTTSCBCHHHHTTCTTCCEEEESSSCCTTB
T ss_pred             cEEEEECCC-CH--HH-HHHHHhcCCEEEeCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHhhCCCceEEEECCcccccc
Confidence            678887753 32  22 33344433443322 2344566778999998864 4689999999999999999999999999


Q ss_pred             chhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC----Ccc----ccccCCEEEEEecC
Q 024297           91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV----PTG----ETLLGKTVFILGFG  162 (269)
Q Consensus        91 d~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~----~~~----~~l~g~~vgIiG~G  162 (269)
                      |+++++++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|..    ..+    .++.|++|||||+|
T Consensus        79 d~~~~~~~gi~v~n~~~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~l~g~~vgIIG~G  155 (333)
T 2d0i_A           79 DLEEATKRGIYVTKVSGL---LSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMG  155 (333)
T ss_dssp             CHHHHHHTTCEEECCCHH---HHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEECCS
T ss_pred             cHHHHHhCCcEEEeCCCc---ChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcccccCCcccCCCCcCEEEEEccC
Confidence            999999999999999998   7899999999999999999999999999999964    235    78999999999999


Q ss_pred             chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCc
Q 024297          163 NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKL  242 (269)
Q Consensus       163 ~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~l  242 (269)
                      .||+.+|++++++|++|++||++... ....             ....    ...++++++++||+|++|+|.+++|+++
T Consensus       156 ~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~-------------~~g~----~~~~l~e~l~~aDiVil~vp~~~~t~~~  217 (333)
T 2d0i_A          156 AIGKAIARRLIPFGVKLYYWSRHRKV-NVEK-------------ELKA----RYMDIDELLEKSDIVILALPLTRDTYHI  217 (333)
T ss_dssp             HHHHHHHHHHGGGTCEEEEECSSCCH-HHHH-------------HHTE----EECCHHHHHHHCSEEEECCCCCTTTTTS
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCcch-hhhh-------------hcCc----eecCHHHHHhhCCEEEEcCCCChHHHHH
Confidence            99999999999999999999987653 1100             0001    1247999999999999999999999999


Q ss_pred             CCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          243 CSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       243 i~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      ++++.++ .||+| +|||+|||.++|+
T Consensus       218 i~~~~~~-~mk~g-ilin~srg~~vd~  242 (333)
T 2d0i_A          218 INEERVK-KLEGK-YLVNIGRGALVDE  242 (333)
T ss_dssp             BCHHHHH-HTBTC-EEEECSCGGGBCH
T ss_pred             hCHHHHh-hCCCC-EEEECCCCcccCH
Confidence            9998999 99999 9999999999984

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=2.7e-41  Score=325.53  Aligned_cols=233  Identities=21%  Similarity=0.299  Sum_probs=194.6

Q ss_pred             CCcceEEEeCCCCCCchhhHHHHHhcCCCeEEee-CCCCChhhhcCCceEEEEe-CCCCCHHHHhcCCCceEEEEccccC
Q 024297           10 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGL   87 (269)
Q Consensus        10 ~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~   87 (269)
                      |++|+|+++.+..+..    .+.+++..++.+.. .+.+++.+.++++|+++++ .+++++++++.+|+||||++.++|+
T Consensus         2 m~~~~vl~~~~~~~~~----~~~l~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~i~~~~~G~   77 (529)
T 1ygy_A            2 VSLPVVLIADKLAPST----VAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGL   77 (529)
T ss_dssp             -CCCEEEECSSCCGGG----GTTSCSSSEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCC
T ss_pred             CCCcEEEEeCCCCHHH----HHHHhcCceEEEcCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCcEEEECCcCc
Confidence            3467999988754332    12333332333222 2345677788999998875 4689999999999999999999999


Q ss_pred             CccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC--CccccccCCEEEEEecCchH
Q 024297           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIG  165 (269)
Q Consensus        88 d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~g~~vgIiG~G~iG  165 (269)
                      |++|+++++++||.|+|+|++   |+.+||||+++++|++.|+++++++.++++.|..  ..+.++.|++|||||+|.||
T Consensus        78 d~id~~~~~~~gi~v~n~p~~---~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIIG~G~IG  154 (529)
T 1ygy_A           78 DNVDVDAATARGVLVVNAPTS---NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIG  154 (529)
T ss_dssp             TTBCHHHHHHTTCEEECCTTS---SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHH
T ss_pred             CccCHhHHHhCCeEEEECCCc---chHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccCcCccccCCCEEEEEeeCHHH
Confidence            999999999999999999998   8899999999999999999999999999999974  34689999999999999999


Q ss_pred             HHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEEEecCCCccccCcCC
Q 024297          166 VELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTVKLCS  244 (269)
Q Consensus       166 ~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~~lp~t~~t~~li~  244 (269)
                      +.+|++|+++|++|++||++.... .                  ....+ ...++++++++||+|++|+|.+++|+++++
T Consensus       155 ~~vA~~l~~~G~~V~~~d~~~~~~-~------------------a~~~g~~~~~l~e~~~~aDvV~l~~P~~~~t~~~i~  215 (529)
T 1ygy_A          155 QLVAQRIAAFGAYVVAYDPYVSPA-R------------------AAQLGIELLSLDDLLARADFISVHLPKTPETAGLID  215 (529)
T ss_dssp             HHHHHHHHTTTCEEEEECTTSCHH-H------------------HHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBC
T ss_pred             HHHHHHHHhCCCEEEEECCCCChh-H------------------HHhcCcEEcCHHHHHhcCCEEEECCCCchHHHHHhC
Confidence            999999999999999999876321 0                  01111 123799999999999999999999999999


Q ss_pred             HHHHhhhCCCCcEEEEccCCCCccC
Q 024297          245 SSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       245 ~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      ++.++ .||+|+++||+|||.++||
T Consensus       216 ~~~~~-~~k~g~ilin~arg~iv~~  239 (529)
T 1ygy_A          216 KEALA-KTKPGVIIVNAARGGLVDE  239 (529)
T ss_dssp             HHHHT-TSCTTEEEEECSCTTSBCH
T ss_pred             HHHHh-CCCCCCEEEECCCCchhhH
Confidence            99999 9999999999999999985

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=3.8e-39  Score=297.88  Aligned_cols=209  Identities=19%  Similarity=0.279  Sum_probs=174.3

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEeeCCCCChhhhcCCceEEEEe-CCCCCHHHHhcCCCceEEEEccccCCccc
Q 024297           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVD   91 (269)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~d~id   91 (269)
                      |||++.... +.    ..++++.+..+.+.. ..+...+.++++|+++++ .+++++++++ +|+||||++.++|+|++|
T Consensus         1 mkil~~~~~-~~----~~~~~~~~~~v~~~~-~~~~~~~~l~~ad~li~~~~~~~~~~~l~-~~~Lk~I~~~~~G~D~iD   73 (380)
T 2o4c_A            1 MRILADENI-PV----VDAFFADQGSIRRLP-GRAIDRAALAEVDVLLVRSVTEVSRAALA-GSPVRFVGTCTIGTDHLD   73 (380)
T ss_dssp             CEEEEETTC-TT----HHHHHGGGSEEEEEC-GGGCSTTTTTTCSEEEECTTSCBCHHHHT-TSCCCEEEECSSCSTTBC
T ss_pred             CEEEEecCc-hH----HHHHHHhCCcEEEec-CCcCChHHHCCcEEEEEcCCCCCCHHHhc-CCCceEEEEcCcccchhh
Confidence            578887653 32    345555554433322 122234457899998875 4689999999 899999999999999999


Q ss_pred             hhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHH
Q 024297           92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR  171 (269)
Q Consensus        92 ~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~  171 (269)
                      +++++++||.|+|+||+   |+.+||||+++++|++.|++                +.++.|+||||||+|+||+.+|++
T Consensus        74 ~~~~~~~gI~v~n~pg~---~~~~vAE~~l~~lL~l~r~~----------------~~~l~g~tvGIIGlG~IG~~vA~~  134 (380)
T 2o4c_A           74 LDYFAEAGIAWSSAPGC---NARGVVDYVLGCLLAMAEVR----------------GADLAERTYGVVGAGQVGGRLVEV  134 (380)
T ss_dssp             HHHHHHHTCEEECCTTT---THHHHHHHHHHHHHHHHHHH----------------TCCGGGCEEEEECCSHHHHHHHHH
T ss_pred             HHHHHhCCCEEEeCCCc---ChHHHHHHHHHHHHHHHhhh----------------hcccCCCEEEEEeCCHHHHHHHHH
Confidence            99999999999999998   88999999999999999973                368999999999999999999999


Q ss_pred             hccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCcc----ccCcCCHHH
Q 024297          172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ----TVKLCSSSL  247 (269)
Q Consensus       172 l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~----t~~li~~~~  247 (269)
                      |++|||+|++||++....                  .   ......++++++++||+|++|+|++++    |+++++++.
T Consensus       135 l~~~G~~V~~~d~~~~~~------------------~---~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~  193 (380)
T 2o4c_A          135 LRGLGWKVLVCDPPRQAR------------------E---PDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPR  193 (380)
T ss_dssp             HHHTTCEEEEECHHHHHH------------------S---TTSCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHH
T ss_pred             HHHCCCEEEEEcCChhhh------------------c---cCcccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHH
Confidence            999999999999754220                  0   001346899999999999999999999    999999999


Q ss_pred             HhhhCCCCcEEEEccCCCCccC
Q 024297          248 SSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       248 l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      |+ .||+|++|||+|||+++||
T Consensus       194 l~-~mk~gailIN~sRG~vvd~  214 (380)
T 2o4c_A          194 LA-ALRPGTWLVNASRGAVVDN  214 (380)
T ss_dssp             HH-TSCTTEEEEECSCGGGBCH
T ss_pred             Hh-hCCCCcEEEECCCCcccCH
Confidence            99 9999999999999999985

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.96  E-value=9.9e-30  Score=227.88  Aligned_cols=211  Identities=14%  Similarity=0.167  Sum_probs=160.1

Q ss_pred             CCcceEEEeCCCCCCchhhHHHHHhcCCCeEEeeCCC-----------CChhhhcCCceEEEEe----------------
Q 024297           10 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPI-----------SDVPDVIANYHLCVVK----------------   62 (269)
Q Consensus        10 ~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~dv~i~~----------------   62 (269)
                      ++.|+|+++... .......+.+.+....+.+...+.           +++.+.++++|+++.+                
T Consensus         3 ~~~m~i~v~~~~-~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~~~   81 (293)
T 3d4o_A            3 LTGKHVVIIGGD-ARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSN   81 (293)
T ss_dssp             CTTCEEEEECBC-HHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSSCS
T ss_pred             ccCcEEEEECCC-HHHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEeccccccCCceeeccccc
Confidence            445789888764 222333444444333443332221           4456678899998874                


Q ss_pred             -CCCCCHHHHhcCCCceEEEEccccCCccch-hhHhcCCcEEEecC------CCCCCCcchHHHHHHHHHHHHhhcHHHH
Q 024297           63 -TMRLDSNCISRANQMKLIMQFGVGLEGVDI-NAATRCGIKVARIP------GDVTGNAASCAELTIYLMLGLLRKQNEM  134 (269)
Q Consensus        63 -~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~-~~~~~~gI~v~n~~------~~~~~~~~~vAE~~l~~~L~~~R~~~~~  134 (269)
                       ..+++++.++.+|+||+|+   +|+|++|+ ++++++||.|+|+|      ++   ++.+|||++++++|..       
T Consensus        82 ~~~~~~~~~l~~~~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~---~~~svae~a~~~~l~~-------  148 (293)
T 3d4o_A           82 ESIVLTEEMIEKTPNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIY---NSIPTAEGTIMMAIQH-------  148 (293)
T ss_dssp             CCCBCCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHH---HHHHHHHHHHHHHHHH-------
T ss_pred             CCccchHHHHHhCCCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeee---ccHhHHHHHHHHHHHh-------
Confidence             1247899999999999997   79999998 89999999999998      66   7799999999988864       


Q ss_pred             HHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC
Q 024297          135 RMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG  214 (269)
Q Consensus       135 ~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (269)
                                  .+.++.|++|||||+|.||+.+|++|+++|++|++++|+..+... ..       ..|     .. ..
T Consensus       149 ------------~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~-~~-------~~g-----~~-~~  202 (293)
T 3d4o_A          149 ------------TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLAR-IA-------EMG-----ME-PF  202 (293)
T ss_dssp             ------------CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HH-------HTT-----SE-EE
T ss_pred             ------------cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHH-HH-------HCC-----Ce-ec
Confidence                        146799999999999999999999999999999999987643100 00       000     00 00


Q ss_pred             CCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297          215 CHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       215 ~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      ...+++++++++|+|++|+|+     ++++++.++ .||+++++||++||+.
T Consensus       203 ~~~~l~~~l~~aDvVi~~~p~-----~~i~~~~l~-~mk~~~~lin~ar~~~  248 (293)
T 3d4o_A          203 HISKAAQELRDVDVCINTIPA-----LVVTANVLA-EMPSHTFVIDLASKPG  248 (293)
T ss_dssp             EGGGHHHHTTTCSEEEECCSS-----CCBCHHHHH-HSCTTCEEEECSSTTC
T ss_pred             ChhhHHHHhcCCCEEEECCCh-----HHhCHHHHH-hcCCCCEEEEecCCCC
Confidence            125788999999999999985     789999999 9999999999999864

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.95  E-value=2e-27  Score=213.48  Aligned_cols=217  Identities=14%  Similarity=0.166  Sum_probs=156.1

Q ss_pred             CCCCCcceEEEeCCCCCCchhhHHHHHhcCCCeEEeeCCCC-----------ChhhhcCCceEEEE----e---------
Q 024297            7 SSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPIS-----------DVPDVIANYHLCVV----K---------   62 (269)
Q Consensus         7 ~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~dv~i~----~---------   62 (269)
                      |.+|+.|||+++... +......+.+.+....+.+...+.+           ++.+.++++|+++.    .         
T Consensus         2 ~~~~~~mki~v~~~~-~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~   80 (300)
T 2rir_A            2 NAMLTGLKIAVIGGD-ARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTV   80 (300)
T ss_dssp             CCCCCSCEEEEESBC-HHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBS
T ss_pred             CccccCCEEEEECCC-HHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCcccccc
Confidence            344666789999774 2223334444444334433332222           24566789998886    2         


Q ss_pred             --CCC--CCHHHHhcCCCceEEEEccccCCccc-hhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHH
Q 024297           63 --TMR--LDSNCISRANQMKLIMQFGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMA  137 (269)
Q Consensus        63 --~~~--~~~~~l~~~~~Lk~I~~~~aG~d~id-~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~  137 (269)
                        ..+  ++++.++.+|++|+|+   +|+|++| +++++++||.|+|+|++     .++         ++.|++...   
T Consensus        81 ~a~~~~~~~~~~l~~~~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~-----~~v---------~~~r~~~~~---  140 (300)
T 2rir_A           81 FSNEEVVLKQDHLDRTPAHCVIF---SGISNAYLENIAAQAKRKLVKLFER-----DDI---------AIYNSIPTV---  140 (300)
T ss_dssp             SCSSCEECCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGS-----HHH---------HHHHHHHHH---
T ss_pred             cccCCccchHHHHhhcCCCCEEE---EecCCHHHHHHHHHCCCEEEeecCC-----Cce---------EEEcCccHH---
Confidence              245  7899999999999998   8999999 99999999999999986     233         234555433   


Q ss_pred             HHhCCCC---CCccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC
Q 024297          138 IEQKKLG---VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG  214 (269)
Q Consensus       138 ~~~~~w~---~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (269)
                        .+.|.   ...+.++.|++|||||+|.||+.+|+.|+++|++|+++||+..+... ...       .|     . ...
T Consensus       141 --~g~~~~~~~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~-~~~-------~g-----~-~~~  204 (300)
T 2rir_A          141 --EGTIMLAIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLAR-ITE-------MG-----L-VPF  204 (300)
T ss_dssp             --HHHHHHHHHTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHH-------TT-----C-EEE
T ss_pred             --HHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHH-------CC-----C-eEE
Confidence              23342   12457899999999999999999999999999999999987643110 000       00     0 000


Q ss_pred             CCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297          215 CHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       215 ~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      ...+++++++++|+|++|+|+     ++++++.++ .||+|+++||++||+.
T Consensus       205 ~~~~l~~~l~~aDvVi~~~p~-----~~i~~~~~~-~mk~g~~lin~a~g~~  250 (300)
T 2rir_A          205 HTDELKEHVKDIDICINTIPS-----MILNQTVLS-SMTPKTLILDLASRPG  250 (300)
T ss_dssp             EGGGHHHHSTTCSEEEECCSS-----CCBCHHHHT-TSCTTCEEEECSSTTC
T ss_pred             chhhHHHHhhCCCEEEECCCh-----hhhCHHHHH-hCCCCCEEEEEeCCCC
Confidence            125789999999999999996     788999999 9999999999999863

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=99.92  E-value=1.1e-25  Score=213.66  Aligned_cols=159  Identities=16%  Similarity=0.127  Sum_probs=131.7

Q ss_pred             CCceEEE-EccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccC
Q 024297           75 NQMKLIM-QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG  153 (269)
Q Consensus        75 ~~Lk~I~-~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g  153 (269)
                      ++++.|. ..++|+|++  +++.++||.++|++++   |+ +|||+       ++|++....+.+..+ |....+.++.|
T Consensus       212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~v---n~-sVae~-------l~r~~~~~~~~l~~g-w~~~~g~~L~G  277 (494)
T 3d64_A          212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNV---ND-SVTKS-------KFDNLYGCRESLVDG-IKRATDVMIAG  277 (494)
T ss_dssp             TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEEC---TT-SHHHH-------HHHHHHHHHTTHHHH-HHHHHCCCCTT
T ss_pred             hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCc---cH-HHHHH-------HHhhhHhhhhhhhhh-hhhccccccCC
Confidence            7899998 889999988  6899999999999998   77 99994       346666655556656 75556678999


Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l  233 (269)
                      ++|||||+|.||+.+|++|++||++|+++++++.+...                 .........++++++++||+|++|+
T Consensus       278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~-----------------a~~~G~~~~~l~ell~~aDiVi~~~  340 (494)
T 3d64_A          278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQ-----------------AAMEGYRVVTMEYAADKADIFVTAT  340 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHH-----------------HHTTTCEECCHHHHTTTCSEEEECS
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHH-----------------HHHcCCEeCCHHHHHhcCCEEEECC
Confidence            99999999999999999999999999999987643100                 0000012358999999999999997


Q ss_pred             CCCccccCcCCHHHHhhhCCCCcEEEEccCCCC-ccC
Q 024297          234 SLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG-VSF  269 (269)
Q Consensus       234 p~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~-vde  269 (269)
                          .|+++|+++.|+ .||+|++|||+|||.+ ||+
T Consensus       341 ----~t~~lI~~~~l~-~MK~gAilINvgrg~veID~  372 (494)
T 3d64_A          341 ----GNYHVINHDHMK-AMRHNAIVCNIGHFDSEIDV  372 (494)
T ss_dssp             ----SSSCSBCHHHHH-HCCTTEEEEECSSSSCSBCC
T ss_pred             ----CcccccCHHHHh-hCCCCcEEEEcCCCcchhch
Confidence                688999999999 9999999999999999 586

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=99.91  E-value=1.2e-25  Score=212.69  Aligned_cols=160  Identities=16%  Similarity=0.128  Sum_probs=135.3

Q ss_pred             CCCceEEE-EccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCcccccc
Q 024297           74 ANQMKLIM-QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLL  152 (269)
Q Consensus        74 ~~~Lk~I~-~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~  152 (269)
                      +++++.|. ..++|+|++  +++.++||.++|++++   |. +|||       ++.|++....+.++.+ |.+..+.++.
T Consensus       191 ~~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~v---n~-sVae-------~l~r~~~~~~~~l~~g-w~r~~~~~l~  256 (479)
T 1v8b_A          191 AKKIIGVSEETTTGVLRL--KKMDKQNELLFTAINV---ND-AVTK-------QKYDNVYGCRHSLPDG-LMRATDFLIS  256 (479)
T ss_dssp             HTTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEEC---TT-SHHH-------HTTHHHHHHHHHHHHH-HHHHHCCCCT
T ss_pred             hcCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCc---cH-HHHH-------HHHhchHhHHHHHhhh-hhhccccccC
Confidence            37899998 889999998  6899999999999998   66 9999       4568888888888877 8655567899


Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      |++|||||+|.||+.+|++|++|||+|+++++++.+....                 ........++++++++||+|++|
T Consensus       257 GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a-----------------~~~g~~~~~l~ell~~aDiVi~~  319 (479)
T 1v8b_A          257 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA-----------------VMEGFNVVTLDEIVDKGDFFITC  319 (479)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH-----------------HTTTCEECCHHHHTTTCSEEEEC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHH-----------------HHcCCEecCHHHHHhcCCEEEEC
Confidence            9999999999999999999999999999999876431010                 00011236899999999999999


Q ss_pred             cCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC-ccC
Q 024297          233 LSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG-VSF  269 (269)
Q Consensus       233 lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~-vde  269 (269)
                      +    .|+++|+++.|+ .||+|++|||+|||.+ ||+
T Consensus       320 ~----~t~~lI~~~~l~-~MK~gailiNvgrg~~EId~  352 (479)
T 1v8b_A          320 T----GNVDVIKLEHLL-KMKNNAVVGNIGHFDDEIQV  352 (479)
T ss_dssp             C----SSSSSBCHHHHT-TCCTTCEEEECSSTTTSBCH
T ss_pred             C----ChhhhcCHHHHh-hcCCCcEEEEeCCCCccccc
Confidence            4    789999999999 9999999999999999 874

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.80  E-value=1.2e-19  Score=167.84  Aligned_cols=197  Identities=15%  Similarity=0.090  Sum_probs=141.5

Q ss_pred             hhcCCceEEEEeCCCCCHHHHhcCCCceEEEEccccCCccchhhHhcCCcEEE----------ecCCCCCCCcchHHHHH
Q 024297           51 DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVA----------RIPGDVTGNAASCAELT  120 (269)
Q Consensus        51 ~~~~~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI~v~----------n~~~~~~~~~~~vAE~~  120 (269)
                      +.++++|+++....+++.+.....++..++.....++|...++.+.++||++.          |.|.+     .++||++
T Consensus        63 ~~~~~adii~~vk~p~~~e~~~l~~~~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~-----s~~ae~a  137 (377)
T 2vhw_A           63 QVWADADLLLKVKEPIAAEYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLL-----APMSEVA  137 (377)
T ss_dssp             HHHHHCSEEECSSCCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTT-----HHHHHHH
T ss_pred             HHhccCCEEEEeCCCChHHHhhcCCCCEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCcccc-----CchHHHH
Confidence            45667898765556666777776788888888788889988999999999998          55554     5788999


Q ss_pred             HHHHHHHh-hcHHHHHHHHHhCCCCC-CccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccch
Q 024297          121 IYLMLGLL-RKQNEMRMAIEQKKLGV-PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSA  198 (269)
Q Consensus       121 l~~~L~~~-R~~~~~~~~~~~~~w~~-~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~  198 (269)
                      ..+.+.+. |++..    ...++|.. ....++.|++|+|+|+|.||+.+++.++++|++|+++|++..+.......   
T Consensus       138 g~~a~~~a~r~l~~----~~~g~~~~~~~~~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~---  210 (377)
T 2vhw_A          138 GRLAAQVGAYHLMR----TQGGRGVLMGGVPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAE---  210 (377)
T ss_dssp             HHHHHHHHHHHTSG----GGTSCCCCTTCBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHH----hcCCCcccccCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHh---
Confidence            86555555 66522    22333321 12247999999999999999999999999999999999876431110000   


Q ss_pred             hhhccccccccccccCCCCCHHHHHhhCCEEEEec--CCCccccCcCCHHHHhhhCCCCcEEEEcc--CCCCc
Q 024297          199 LAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL--SLNKQTVKLCSSSLSSKSMFFATYVVFMF--QGHGV  267 (269)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l--p~t~~t~~li~~~~l~~~mk~ga~lIN~~--RG~~v  267 (269)
                      +    |  ...........+++++++++|+|+.++  |.+ +|.++++++.++ .||+|+++||+|  ||.++
T Consensus       211 ~----g--~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~-~t~~li~~~~l~-~mk~g~~iV~va~~~Ggv~  275 (377)
T 2vhw_A          211 F----C--GRIHTRYSSAYELEGAVKRADLVIGAVLVPGA-KAPKLVSNSLVA-HMKPGAVLVDIAIDQGGCF  275 (377)
T ss_dssp             T----T--TSSEEEECCHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHT-TSCTTCEEEEGGGGTTCSB
T ss_pred             c----C--CeeEeccCCHHHHHHHHcCCCEEEECCCcCCC-CCcceecHHHHh-cCCCCcEEEEEecCCCCcc
Confidence            0    0  000000001246788999999999976  554 788999999999 999999999999  77543

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.77  E-value=1.3e-18  Score=162.06  Aligned_cols=204  Identities=14%  Similarity=0.071  Sum_probs=131.6

Q ss_pred             CceEEEEeCCCCCHHHHhcC-CCceEEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHH
Q 024297           55 NYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNE  133 (269)
Q Consensus        55 ~~dv~i~~~~~~~~~~l~~~-~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~  133 (269)
                      ++|+++.. ..++++.++.+ +++++|...+.|+|+.+++++.++||++.+.        +.|+|++..+.|.+++.+..
T Consensus        72 ~adiil~v-k~p~~~~i~~l~~~~~li~~~~~~~d~~~~~al~~~gI~v~~~--------e~v~~~~~a~~l~~l~~~a~  142 (401)
T 1x13_A           72 QSEIILKV-NAPLDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMAM--------DSVPRISRAQSLDALSSMAN  142 (401)
T ss_dssp             SSSEEECS-SCCCHHHHTTCCTTCEEEECCCGGGCHHHHHHHHHTTCEEEEG--------GGCCCSGGGGGGCHHHHHHH
T ss_pred             cCCeEEEe-CCCCHHHHHHhcCCCcEEEEecCCCCHHHHHHHHHCCCEEEEe--------ehhhhhhhhcccchHHHHHH
Confidence            38987753 33567788876 7999999999999999999999999999754        33444443332222222221


Q ss_pred             H--HHHHHhC-----CCCCCcc---ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcc
Q 024297          134 M--RMAIEQK-----KLGVPTG---ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKN  203 (269)
Q Consensus       134 ~--~~~~~~~-----~w~~~~~---~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~  203 (269)
                      .  +..+..+     +|....+   .++.+++|+|+|+|.||+.+++.++++|++|+++|++..+.......-..+...+
T Consensus       143 ~ag~~av~~~~~~~~~~~~~~~~~~g~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~  222 (401)
T 1x13_A          143 IAGYRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELD  222 (401)
T ss_dssp             HHHHHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC-
T ss_pred             HHHHHHHHHHHHhcccccCCceeeccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEec
Confidence            1  1222222     2211111   1588999999999999999999999999999999997654211100000000000


Q ss_pred             cc----cccccc-ccCC------CCCHHHHHhhCCEEEEe--cCCCccccCcCCHHHHhhhCCCCcEEEEcc--CCCCcc
Q 024297          204 GI----IDDLVD-EKGC------HEDIFEFASKADVVVCC--LSLNKQTVKLCSSSLSSKSMFFATYVVFMF--QGHGVS  268 (269)
Q Consensus       204 ~~----~~~~~~-~~~~------~~~l~ell~~aDvvv~~--lp~t~~t~~li~~~~l~~~mk~ga~lIN~~--RG~~vd  268 (269)
                      ..    -..... ....      ...+.++++++|+|+.+  +|. ..+..+++++.++ .||+|+++||+|  ||..++
T Consensus       223 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~aDvVI~~~~~pg-~~ap~li~~~~l~-~mk~g~vIVdva~~~Gg~v~  300 (401)
T 1x13_A          223 FKEEAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPG-KPAPKLITREMVD-SMKAGSVIVDLAAQNGGNCE  300 (401)
T ss_dssp             -------CCHHHHHHSHHHHHHHHHHHHHHHHHCSEEEECCCCTT-SCCCCCBCHHHHH-TSCTTCEEEETTGGGTCSBT
T ss_pred             ccccccccccchhhccHHHHHHHHHHHHHHhCCCCEEEECCccCC-CCCCeeeCHHHHh-cCCCCcEEEEEcCCCCCCcC
Confidence            00    000000 0000      01377889999999999  553 2467899999999 999999999999  998776


Q ss_pred             C
Q 024297          269 F  269 (269)
Q Consensus       269 e  269 (269)
                      +
T Consensus       301 ~  301 (401)
T 1x13_A          301 Y  301 (401)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.74  E-value=7.9e-19  Score=166.97  Aligned_cols=156  Identities=16%  Similarity=0.120  Sum_probs=118.3

Q ss_pred             CceEE-EEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCC
Q 024297           76 QMKLI-MQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGK  154 (269)
Q Consensus        76 ~Lk~I-~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~  154 (269)
                      +++-+ -..++|+|++  .++.++||.++|++++   |. +|||+       .+|++....+...++ |....+..+.|+
T Consensus       210 ~i~GvveetgtGVd~l--~a~~~~Gilv~~~~~v---n~-sVae~-------~~r~l~~~~~s~~~g-~~r~~~~~l~Gk  275 (494)
T 3ce6_A          210 SVKGVTEETTTGVLRL--YQFAAAGDLAFPAINV---ND-SVTKS-------KFDNKYGTRHSLIDG-INRGTDALIGGK  275 (494)
T ss_dssp             HCCCEEECSHHHHHHH--HHHHHTTCCCSCEEEC---TT-SHHHH-------TTHHHHHHHHHHHHH-HHHHHCCCCTTC
T ss_pred             CeEEEEEEeCCChhHH--HHHHHcCCEEEecCCc---cH-HHHHH-------HHhhhhhhhhhhhHH-HHhccCCCCCcC
Confidence            34444 4779999998  6788999999999997   66 99994       345544433333333 332233478999


Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEEEec
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCL  233 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~~l  233 (269)
                      +|+|+|+|.||+.+|++++++|++|+++++++.+...                  ....+ ...+++++++++|+|+.|+
T Consensus       276 tV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~------------------A~~~Ga~~~~l~e~l~~aDvVi~at  337 (494)
T 3ce6_A          276 KVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQ------------------AMMEGFDVVTVEEAIGDADIVVTAT  337 (494)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH------------------HHHTTCEECCHHHHGGGCSEEEECS
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH------------------HHHcCCEEecHHHHHhCCCEEEECC
Confidence            9999999999999999999999999999987644111                  01111 2356889999999999997


Q ss_pred             CCCccccCcCCHHHHhhhCCCCcEEEEccCCCC-cc
Q 024297          234 SLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG-VS  268 (269)
Q Consensus       234 p~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~-vd  268 (269)
                      +    +.++++++.|+ .||+|++++|+||+.. ||
T Consensus       338 g----t~~~i~~~~l~-~mk~ggilvnvG~~~~eId  368 (494)
T 3ce6_A          338 G----NKDIIMLEHIK-AMKDHAILGNIGHFDNEID  368 (494)
T ss_dssp             S----SSCSBCHHHHH-HSCTTCEEEECSSSGGGBC
T ss_pred             C----CHHHHHHHHHH-hcCCCcEEEEeCCCCCccC
Confidence            4    56789988999 9999999999999987 65

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.73  E-value=3.6e-17  Score=151.53  Aligned_cols=209  Identities=12%  Similarity=0.108  Sum_probs=131.9

Q ss_pred             hhcCCceEEEEeCCCC----CHHHHhcCC-CceEEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHH
Q 024297           51 DVIANYHLCVVKTMRL----DSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML  125 (269)
Q Consensus        51 ~~~~~~dv~i~~~~~~----~~~~l~~~~-~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L  125 (269)
                      +.++++|+++....++    +++.++.++ ++++|.....+.|+.+++++.++||.+++....    ...+++..+. +|
T Consensus        63 ~~~~~adiil~v~~p~~~~~~~~~i~~l~~~~~~i~~~~~~~~~~~~~~~~~~gi~~~~~e~~----~~~~~~~~l~-~l  137 (384)
T 1l7d_A           63 QALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELM----PRISRAQSMD-IL  137 (384)
T ss_dssp             HHHSSCSEEEEEECCCCGGGSCCGGGGSCTTCEEEEECCGGGCHHHHHHHHHTTCEEEEGGGC----CCSGGGGGGC-HH
T ss_pred             hhhcCCCEEEEecCcccccCCHHHHHhhccCCEEEEEecccCCHHHHHHHHHCCCEEEEeccc----cccccccccc-hh
Confidence            4578899888655555    788888886 799999999999999999999999999985221    1111111211 22


Q ss_pred             HHhhcHHHHHHHHHh-----CCCCCC--cc-ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccc
Q 024297          126 GLLRKQNEMRMAIEQ-----KKLGVP--TG-ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSS  197 (269)
Q Consensus       126 ~~~R~~~~~~~~~~~-----~~w~~~--~~-~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~  197 (269)
                      +..+.+. .+..+..     ++|...  .+ .++.+++|+|+|+|.+|+.+++.++++|++|+++|++..+.......-.
T Consensus       138 ~~~a~~a-g~~av~~~~~~~~~~~~~~~~~~~~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga  216 (384)
T 1l7d_A          138 SSQSNLA-GYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGG  216 (384)
T ss_dssp             HHHHHHH-HHHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTC
T ss_pred             hHHHHHH-HHHHHHHHHHHhhhcccchhccCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence            2222221 1111111     222111  11 4789999999999999999999999999999999998654211100000


Q ss_pred             hhh-hcccc-----ccccccccC-------CCCCHHHHHhhCCEEEEec--CCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          198 ALA-VKNGI-----IDDLVDEKG-------CHEDIFEFASKADVVVCCL--SLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       198 ~~~-~~~~~-----~~~~~~~~~-------~~~~l~ell~~aDvvv~~l--p~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      .+. +....     -........       ....+.++++++|+|+.++  |.+ .+.++++++.++ .||+|+++||++
T Consensus       217 ~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~-~~~~li~~~~l~-~mk~g~vivdva  294 (384)
T 1l7d_A          217 KFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGK-PAPVLITEEMVT-KMKPGSVIIDLA  294 (384)
T ss_dssp             EECCC-----------------------CCHHHHHHHHHTTCSEEEECCCCTTS-CCCCCSCHHHHT-TSCTTCEEEETT
T ss_pred             eEEeecccccccccccccchhhcCHHHHhhhHHHHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHh-cCCCCCEEEEEe
Confidence            000 00000     000000000       0011778899999999887  433 356788999999 999999999999


Q ss_pred             --CCCCc
Q 024297          263 --QGHGV  267 (269)
Q Consensus       263 --RG~~v  267 (269)
                        ||..+
T Consensus       295 ~~~gg~~  301 (384)
T 1l7d_A          295 VEAGGNC  301 (384)
T ss_dssp             GGGTCSS
T ss_pred             cCCCCCe
Confidence              88654

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.72  E-value=7.9e-18  Score=156.95  Aligned_cols=148  Identities=16%  Similarity=0.115  Sum_probs=103.9

Q ss_pred             cccCCccc-hhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecC
Q 024297           84 GVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG  162 (269)
Q Consensus        84 ~aG~d~id-~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G  162 (269)
                      ++|+..+. .....+.+|+|.|+++.   ...+..+...+..-++.+.+.+            ..+..+.|++|||+|+|
T Consensus       156 ttGv~rL~~~~~~g~L~iPVinvnds---vtk~~~Dn~~Gt~~slldgi~r------------atg~~L~GktVgIiG~G  220 (436)
T 3h9u_A          156 TTGVKNLYKRLQRGKLTIPAMNVNDS---VTKSKFDNLYGCRESLVDGIKR------------ATDVMIAGKTACVCGYG  220 (436)
T ss_dssp             HHHHHHHHHHHHHTCCCSCEEECTTS---HHHHTTHHHHHHHHHHHHHHHH------------HHCCCCTTCEEEEECCS
T ss_pred             CcChHHHHHHHHcCCCCCceEeechh---hhhhhhhccccchHHHHHHHHH------------hcCCcccCCEEEEEeeC
Confidence            44444331 22345689999999876   2233333333322222222211            02577999999999999


Q ss_pred             chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCc
Q 024297          163 NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKL  242 (269)
Q Consensus       163 ~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~l  242 (269)
                      .||+.+|++|++||++|+++++++.+...                 ....-....++++++++||+|++    ++.|+++
T Consensus       221 ~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~-----------------A~~~G~~~~sL~eal~~ADVVil----t~gt~~i  279 (436)
T 3h9u_A          221 DVGKGCAAALRGFGARVVVTEVDPINALQ-----------------AAMEGYQVLLVEDVVEEAHIFVT----TTGNDDI  279 (436)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSCHHHHHH-----------------HHHTTCEECCHHHHTTTCSEEEE----CSSCSCS
T ss_pred             HHHHHHHHHHHHCCCEEEEECCChhhhHH-----------------HHHhCCeecCHHHHHhhCCEEEE----CCCCcCc
Confidence            99999999999999999999986533110                 00111134689999999999996    4478899


Q ss_pred             CCHHHHhhhCCCCcEEEEccCCCC-cc
Q 024297          243 CSSSLSSKSMFFATYVVFMFQGHG-VS  268 (269)
Q Consensus       243 i~~~~l~~~mk~ga~lIN~~RG~~-vd  268 (269)
                      |+++.|+ .||+|++|||+|||.. ||
T Consensus       280 I~~e~l~-~MK~gAIVINvgRg~vEID  305 (436)
T 3h9u_A          280 ITSEHFP-RMRDDAIVCNIGHFDTEIQ  305 (436)
T ss_dssp             BCTTTGG-GCCTTEEEEECSSSGGGBC
T ss_pred             cCHHHHh-hcCCCcEEEEeCCCCCccC
Confidence            9999999 9999999999999986 54

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.71  E-value=3.4e-17  Score=152.69  Aligned_cols=100  Identities=18%  Similarity=0.118  Sum_probs=82.2

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      +..+.||+|+|+|+|.||+.+|+++++|||+|+++++++.+...                 ....-....++++++++||
T Consensus       242 g~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~-----------------A~~~G~~vv~LeElL~~AD  304 (464)
T 3n58_A          242 DVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQ-----------------AAMDGFEVVTLDDAASTAD  304 (464)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHH-----------------HHHTTCEECCHHHHGGGCS
T ss_pred             CCcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhH-----------------HHhcCceeccHHHHHhhCC
Confidence            57899999999999999999999999999999999975532110                 0000012467999999999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC-ccC
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG-VSF  269 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~-vde  269 (269)
                      +|+++.    .|+++|+++.|+ +||+|++|||+|||.+ ||+
T Consensus       305 IVv~at----gt~~lI~~e~l~-~MK~GAILINvGRgdvEID~  342 (464)
T 3n58_A          305 IVVTTT----GNKDVITIDHMR-KMKDMCIVGNIGHFDNEIQV  342 (464)
T ss_dssp             EEEECC----SSSSSBCHHHHH-HSCTTEEEEECSSSTTTBTC
T ss_pred             EEEECC----CCccccCHHHHh-cCCCCeEEEEcCCCCcccCH
Confidence            999863    578999999999 9999999999999997 764

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.65  E-value=3.8e-16  Score=145.38  Aligned_cols=97  Identities=18%  Similarity=0.206  Sum_probs=80.6

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      +..+.|++|+|+|+|.||+.+|++|++||++|+++++++.+....                 ...-....+++++++++|
T Consensus       215 ~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A-----------------~~~G~~v~~Leeal~~AD  277 (435)
T 3gvp_A          215 DMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQA-----------------CMDGFRLVKLNEVIRQVD  277 (435)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------------HHTTCEECCHHHHTTTCS
T ss_pred             CceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHH-----------------HHcCCEeccHHHHHhcCC
Confidence            467999999999999999999999999999999999865331110                 000012467999999999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      +|+++    +.|+++|+++.|+ .||+|++|||+|||..
T Consensus       278 IVi~a----tgt~~lI~~e~l~-~MK~gailINvgrg~~  311 (435)
T 3gvp_A          278 IVITC----TGNKNVVTREHLD-RMKNSCIVCNMGHSNT  311 (435)
T ss_dssp             EEEEC----SSCSCSBCHHHHH-HSCTTEEEEECSSTTT
T ss_pred             EEEEC----CCCcccCCHHHHH-hcCCCcEEEEecCCCc
Confidence            99995    4688999999999 9999999999999986

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.59  E-value=4.1e-15  Score=136.98  Aligned_cols=196  Identities=14%  Similarity=0.068  Sum_probs=127.5

Q ss_pred             hcCCceEEEEeCCCCCHHHHhcC-CCceEEEEccccCCccchhhHhcCCcEEE---ecCCCCCCC---cchHHHHHH-HH
Q 024297           52 VIANYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVA---RIPGDVTGN---AASCAELTI-YL  123 (269)
Q Consensus        52 ~~~~~dv~i~~~~~~~~~~l~~~-~~Lk~I~~~~aG~d~id~~~~~~~gI~v~---n~~~~~~~~---~~~vAE~~l-~~  123 (269)
                      .+ ++|+++....++ .+.++.+ ++.++|.....+.|..+++.+.++||++.   +.+... ++   -.++++.+- +.
T Consensus        63 ~~-~ad~il~vk~p~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ia~e~~~~~~-~~~~~l~~~s~~ag~~a  139 (369)
T 2eez_A           63 AW-GAEMVVKVKEPL-PEEYGFLREGLILFTYLHLAADRGLTEAMLRSGVTGIAYETVQLPD-GTLPLLVPMSEVAGRMA  139 (369)
T ss_dssp             HT-TSSEEECSSCCC-GGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTT-CCCTTTHHHHHHHHHHH
T ss_pred             ee-cCCEEEEECCCC-HHHHhhcCCCcEEEEEecccCCHHHHHHHHHCCCeEEEeecccccc-CCeeecccchHHHHHHH
Confidence            56 899887544455 4446665 78999999999999999999999999998   555431 11   145565554 12


Q ss_pred             HHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcc
Q 024297          124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKN  203 (269)
Q Consensus       124 ~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~  203 (269)
                      ++...+.+.....  .++.|... ...+.+++|+|+|.|.||+.+++.++++|++|+++|++..+.......   +    
T Consensus       140 v~~a~~~l~~~~~--g~~~~~~~-~~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~---~----  209 (369)
T 2eez_A          140 PQVGAQFLEKPKG--GRGVLLGG-VPGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDV---F----  209 (369)
T ss_dssp             HHHHHHHTSGGGT--SCCCCTTC-BTBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---T----
T ss_pred             HHHHHHHHHHhcC--CCceecCC-CCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh---c----
Confidence            2222222221110  01123222 247999999999999999999999999999999999875431110000   0    


Q ss_pred             ccccccccccCCCCCHHHHHhhCCEEEEecCCCc-cccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          204 GIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNK-QTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       204 ~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~-~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |  ...........+++++++++|+|+.+++.+. .+..+++++.++ .||+|+++||++-
T Consensus       210 g--~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~li~~~~l~-~mk~gg~iV~v~~  267 (369)
T 2eez_A          210 G--GRVITLTATEANIKKSVQHADLLIGAVLVPGAKAPKLVTRDMLS-LMKEGAVIVDVAV  267 (369)
T ss_dssp             T--TSEEEEECCHHHHHHHHHHCSEEEECCC-------CCSCHHHHT-TSCTTCEEEECC-
T ss_pred             C--ceEEEecCCHHHHHHHHhCCCEEEECCCCCccccchhHHHHHHH-hhcCCCEEEEEec
Confidence            0  0000000123467888999999999999765 678899999999 9999999999983

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.37  E-value=1.6e-11  Score=113.88  Aligned_cols=205  Identities=17%  Similarity=0.111  Sum_probs=118.8

Q ss_pred             hhcCCceEEEEeCCCCCHHHHhcC-CCceEEEEccccCCccchhhHhcCCcEEEecCCCCC-CCcc------hHHHHHHH
Q 024297           51 DVIANYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT-GNAA------SCAELTIY  122 (269)
Q Consensus        51 ~~~~~~dv~i~~~~~~~~~~l~~~-~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~-~~~~------~vAE~~l~  122 (269)
                      +.+.++|+++.-. .++++-++.+ ++-.++..+-..-|.--++.+.++||...-..-... ..+.      +++|.+= 
T Consensus        86 ~~~~~adiIlkVk-~p~~~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~r~~ra~~l~~ls~~s~iAG-  163 (405)
T 4dio_A           86 ADAKTADVILKVR-RPSAQEISGYRSGAVVIAIMDPYGNEEAISAMAGAGLTTFAMELMPRITRAQSMDVLSSQANLAG-  163 (405)
T ss_dssp             GGGGGCSEEEEEE-CCCTTTGGGSCTTCEEEEECCCTTCHHHHHHHHHTTCEEEEGGGSCCSGGGGGGCHHHHHHHHHH-
T ss_pred             HhhccCCEEEEeC-CCChhHHhhcCCCcEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccCccceecchhHHHH-
Confidence            3356789877432 3444445544 466666665554454445678889988854322200 0011      2233222 


Q ss_pred             HHHHHhhcHHHHHHHHHhCC-CCCC--ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchh
Q 024297          123 LMLGLLRKQNEMRMAIEQKK-LGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL  199 (269)
Q Consensus       123 ~~L~~~R~~~~~~~~~~~~~-w~~~--~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~  199 (269)
                           .+-.......+  ++ +...  ....+.+.+|+|+|+|.+|..+++.++++|++|+++|+++.+.......  +.
T Consensus       164 -----y~Av~~aa~~l--~~~~~~l~t~~g~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~--G~  234 (405)
T 4dio_A          164 -----YQAVIDAAYEY--DRALPMMMTAAGTVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASL--GA  234 (405)
T ss_dssp             -----HHHHHHHHHHC--SSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHT--TC
T ss_pred             -----HHHHHHHHHHh--HhhhchhhccCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc--CC
Confidence                 22111111111  11 1111  1145889999999999999999999999999999999987642111100  00


Q ss_pred             hhccccc---cc--cccccCC----------CCCHHHHHhhCCEEEEec--CCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          200 AVKNGII---DD--LVDEKGC----------HEDIFEFASKADVVVCCL--SLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       200 ~~~~~~~---~~--~~~~~~~----------~~~l~ell~~aDvvv~~l--p~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      .+..-..   ++  ....+..          ..+++++++++|+|+.++  |.. .+..+++++.++ .||+|+++||++
T Consensus       235 ~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv~-~Mk~GsVIVDvA  312 (405)
T 4dio_A          235 KFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVAEHIAKQDIVITTALIPGR-PAPRLVTREMLD-SMKPGSVVVDLA  312 (405)
T ss_dssp             EECCCCC-----------------CHHHHHHHHHHHHHHHTCSEEEECCCCSSS-CCCCCBCHHHHT-TSCTTCEEEETT
T ss_pred             ceeecccccccccccccchhhhcchhhhhhhHhHHHHHhcCCCEEEECCcCCCC-CCCEEecHHHHh-cCCCCCEEEEEe
Confidence            0000000   00  0000000          136889999999999885  432 467899999999 999999999999


Q ss_pred             --CCCCcc
Q 024297          263 --QGHGVS  268 (269)
Q Consensus       263 --RG~~vd  268 (269)
                        +|..++
T Consensus       313 ~d~GG~~e  320 (405)
T 4dio_A          313 VERGGNIE  320 (405)
T ss_dssp             GGGTCSBT
T ss_pred             CCCCCCcc
Confidence              887653

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.36  E-value=9e-13  Score=123.08  Aligned_cols=95  Identities=20%  Similarity=0.180  Sum_probs=71.5

Q ss_pred             ccc-ccCCEEEEEecCchHHHHHHHhcc-CCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh
Q 024297          148 GET-LLGKTVFILGFGNIGVELAKRLRP-FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK  225 (269)
Q Consensus       148 ~~~-l~g~~vgIiG~G~iG~~~a~~l~~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  225 (269)
                      |.+ +.|+||+|+|+|+||+.+|++|++ |||+|++++++...                    ....  ...+++++++.
T Consensus       206 G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~--------------------~~~~--~gvdl~~L~~~  263 (419)
T 1gtm_A          206 GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGG--------------------IYNP--DGLNADEVLKW  263 (419)
T ss_dssp             TCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCE--------------------EEEE--EEECHHHHHHH
T ss_pred             CCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCcc--------------------ccCc--cCCCHHHHHHH
Confidence            466 999999999999999999999999 99999999643211                    0000  01245566654


Q ss_pred             CCE-EEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          226 ADV-VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       226 aDv-vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      +|. .++ +|+ ++|++ ++.+.|. .||+ .+|||+|||.+|||
T Consensus       264 ~d~~~~l-~~l-~~t~~-i~~~~l~-~mk~-dilIn~ArG~~Vde  303 (419)
T 1gtm_A          264 KNEHGSV-KDF-PGATN-ITNEELL-ELEV-DVLAPAAIEEVITK  303 (419)
T ss_dssp             HHHHSSS-TTC-TTSEE-ECHHHHH-HSCC-SEEEECSCSCCBCT
T ss_pred             HHhcCEe-ecC-ccCee-eCHHHHH-hCCC-CEEEECCCcccCCH
Confidence            443 122 566 67888 7999999 9998 59999999999997

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.33  E-value=1.5e-11  Score=113.10  Aligned_cols=210  Identities=13%  Similarity=0.051  Sum_probs=119.2

Q ss_pred             hhcCCceEEEEeCCCCCHHHHhcC-CCceEEEEccccCCccchhhHhcCCcEEEecCCCCC-CCcchHHHHHHHHHHHHh
Q 024297           51 DVIANYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT-GNAASCAELTIYLMLGLL  128 (269)
Q Consensus        51 ~~~~~~dv~i~~~~~~~~~~l~~~-~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~-~~~~~vAE~~l~~~L~~~  128 (269)
                      +.+. +|+++. ...++++-++.+ ++-.++..+-.-.|.--++.+.++||...-..-... ..+.++--+.-+.-++..
T Consensus        81 ~~~~-adiIlk-Vk~p~~~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iAGy  158 (381)
T 3p2y_A           81 DPWP-ADVVVK-VNPPTSDEISQLKPGSVLIGFLAPRTQPELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVAGY  158 (381)
T ss_dssp             CCTT-SSEEEC-SSCCCHHHHTTSCTTCEEEECCCTTTCHHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHHHH
T ss_pred             eeec-CCEEEE-eCCCChhHHhhccCCCEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccccceeecchhHHHHH
Confidence            3444 787764 244666667665 466666655554454445678899988864332200 001111001111111122


Q ss_pred             hcHHHHHHHHHhCCCCCC---ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcc--
Q 024297          129 RKQNEMRMAIEQKKLGVP---TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKN--  203 (269)
Q Consensus       129 R~~~~~~~~~~~~~w~~~---~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~--  203 (269)
                      +-.......  -++....   ....+.+++|+|||+|.+|..+++.++++|++|+++|++..+.......  +..+.+  
T Consensus       159 ~Av~~aa~~--l~~~~~~l~~~~~~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~l--Ga~~~~l~  234 (381)
T 3p2y_A          159 KAVLLGASL--STRFVPMLTTAAGTVKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSV--GAQWLDLG  234 (381)
T ss_dssp             HHHHHHHHH--CSSCSSCEECSSCEECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHT--TCEECCCC
T ss_pred             HHHHHHHHH--hhhhhhhhhcccCCcCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc--CCeEEecc
Confidence            211111111  1111110   1246799999999999999999999999999999999987542111100  000000  


Q ss_pred             --c-cccccccc------cCCCCCHHHHHhhCCEEEEec--CCCccccCcCCHHHHhhhCCCCcEEEEcc--CCCCcc
Q 024297          204 --G-IIDDLVDE------KGCHEDIFEFASKADVVVCCL--SLNKQTVKLCSSSLSSKSMFFATYVVFMF--QGHGVS  268 (269)
Q Consensus       204 --~-~~~~~~~~------~~~~~~l~ell~~aDvvv~~l--p~t~~t~~li~~~~l~~~mk~ga~lIN~~--RG~~vd  268 (269)
                        + +.......      .....++.++++++|+|+.++  |. ..+..+++++.++ .||+|+++||+|  +|..++
T Consensus       235 ~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg-~~ap~Lvt~emv~-~MkpGsVIVDvA~d~GG~~e  310 (381)
T 3p2y_A          235 IDAAGEGGYARELSEAERAQQQQALEDAITKFDIVITTALVPG-RPAPRLVTAAAAT-GMQPGSVVVDLAGETGGNCE  310 (381)
T ss_dssp             -------------CHHHHHHHHHHHHHHHTTCSEEEECCCCTT-SCCCCCBCHHHHH-TSCTTCEEEETTGGGTCSBT
T ss_pred             ccccccccchhhhhHHHHhhhHHHHHHHHhcCCEEEECCCCCC-cccceeecHHHHh-cCCCCcEEEEEeCCCCCccc
Confidence              0 00000000      001236789999999999886  43 3466799999999 999999999999  776653

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.33  E-value=9.7e-14  Score=129.28  Aligned_cols=169  Identities=17%  Similarity=0.256  Sum_probs=124.8

Q ss_pred             CCceEEEEccccCCccchhhHh-----cCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC---
Q 024297           75 NQMKLIMQFGVGLEGVDINAAT-----RCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---  146 (269)
Q Consensus        75 ~~Lk~I~~~~aG~d~id~~~~~-----~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~---  146 (269)
                      +.+++|...++|+|++++....     ++++.+++.+|.    ..+++++.+..++.+.|++..... ...+.|...   
T Consensus        80 ~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~----~~~~~~~~~~~a~~~~k~v~~~~~-~~~~~~s~a~~a  154 (404)
T 1gpj_A           80 EAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT----LDEALKIVFRRAINLGKRAREETR-ISEGAVSIGSAA  154 (404)
T ss_dssp             HHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHHHHSS-TTCSCCSHHHHH
T ss_pred             hHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC----chHHHHHHHHHHhhhhccCcchhh-hcCCCccHHHHH
Confidence            4688999999999999887766     778888888875    257899999999999998865432 223344310   


Q ss_pred             --c-c---ccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCH
Q 024297          147 --T-G---ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI  219 (269)
Q Consensus       147 --~-~---~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  219 (269)
                        . .   .++.|++|+|+|+|.||+.+++.|+.+|+ +|++++|+..+......             ..........++
T Consensus       155 v~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~-------------~~g~~~~~~~~l  221 (404)
T 1gpj_A          155 VELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELAR-------------DLGGEAVRFDEL  221 (404)
T ss_dssp             HHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH-------------HHTCEECCGGGH
T ss_pred             HHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-------------HcCCceecHHhH
Confidence              1 1   14789999999999999999999999999 99999997644100000             000011123578


Q ss_pred             HHHHhhCCEEEEecCCCccccCcCCHHHHhhh--C----CCCcEEEEccCCC
Q 024297          220 FEFASKADVVVCCLSLNKQTVKLCSSSLSSKS--M----FFATYVVFMFQGH  265 (269)
Q Consensus       220 ~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~--m----k~ga~lIN~~RG~  265 (269)
                      .+++.++|+|+.++|   .+.++++++.++ .  |    +++.++||++...
T Consensus       222 ~~~l~~aDvVi~at~---~~~~~~~~~~l~-~~~lk~r~~~~~v~vdia~P~  269 (404)
T 1gpj_A          222 VDHLARSDVVVSATA---APHPVIHVDDVR-EALRKRDRRSPILIIDIANPR  269 (404)
T ss_dssp             HHHHHTCSEEEECCS---SSSCCBCHHHHH-HHHHHCSSCCCEEEEECCSSC
T ss_pred             HHHhcCCCEEEEccC---CCCceecHHHHH-HHHHhccCCCCEEEEEccCCC
Confidence            889999999999976   556788888888 6  4    3678999998744

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.16  E-value=3.8e-11  Score=109.67  Aligned_cols=94  Identities=17%  Similarity=0.195  Sum_probs=75.3

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHh-hCC
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS-KAD  227 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~-~aD  227 (269)
                      ++.||||+|+|+|+||+.+|++|+++|++|+++|++..+  .                +....++ ...+.++++. +||
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~--~----------------~~a~~~ga~~v~~~ell~~~~D  233 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER--V----------------AHAVALGHTAVALEDVLSTPCD  233 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH--H----------------HHHHHTTCEECCGGGGGGCCCS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH--H----------------HHHHhcCCEEeChHHhhcCccc
Confidence            799999999999999999999999999999999875321  0                0011111 2235567788 999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCcc
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVS  268 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vd  268 (269)
                      +++.|     ++.+.|+++.++ .|| ..+++|.+||++++
T Consensus       234 IliP~-----A~~~~I~~~~~~-~lk-~~iVie~AN~p~t~  267 (355)
T 1c1d_A          234 VFAPC-----AMGGVITTEVAR-TLD-CSVVAGAANNVIAD  267 (355)
T ss_dssp             EEEEC-----SCSCCBCHHHHH-HCC-CSEECCSCTTCBCS
T ss_pred             eecHh-----HHHhhcCHHHHh-hCC-CCEEEECCCCCCCC
Confidence            99854     688999999999 998 78999999999886

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.15  E-value=5.9e-11  Score=112.22  Aligned_cols=95  Identities=19%  Similarity=0.160  Sum_probs=76.3

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      +..+.||+++|+|+|.||+.+|++|+++|++|+++++++.+....                 ........++++++..+|
T Consensus       260 g~~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~A-----------------a~~g~dv~~lee~~~~aD  322 (488)
T 3ond_A          260 DVMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQA-----------------TMEGLQVLTLEDVVSEAD  322 (488)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------------HHTTCEECCGGGTTTTCS
T ss_pred             CCcccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-----------------HHhCCccCCHHHHHHhcC
Confidence            456999999999999999999999999999999999865331110                 011112356788889999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +|+.+.    .+.++++.+.|+ .||++++++|+||+
T Consensus       323 vVi~at----G~~~vl~~e~l~-~mk~gaiVvNaG~~  354 (488)
T 3ond_A          323 IFVTTT----GNKDIIMLDHMK-KMKNNAIVCNIGHF  354 (488)
T ss_dssp             EEEECS----SCSCSBCHHHHT-TSCTTEEEEESSST
T ss_pred             EEEeCC----CChhhhhHHHHH-hcCCCeEEEEcCCC
Confidence            999764    467899999999 99999999999998

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.13  E-value=4.1e-11  Score=107.48  Aligned_cols=100  Identities=17%  Similarity=0.137  Sum_probs=75.9

Q ss_pred             ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHh
Q 024297          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS  224 (269)
Q Consensus       147 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~  224 (269)
                      ..+...-++|||||+|.||..+|+.|...|++|++|||+..+...                  ..+.+  ...++.++++
T Consensus        15 ~~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~------------------l~~~g~~~~~~~~~~~~   76 (310)
T 3doj_A           15 VPRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDE------------------LVEHGASVCESPAEVIK   76 (310)
T ss_dssp             ---CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHH------------------HHHTTCEECSSHHHHHH
T ss_pred             CcccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHH------------------HHHCCCeEcCCHHHHHH
Confidence            334556689999999999999999999999999999998654211                  11111  2368999999


Q ss_pred             hCCEEEEecCCCccccCcC--CHHHHhhhCCCCcEEEEccCCC
Q 024297          225 KADVVVCCLSLNKQTVKLC--SSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li--~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      ++|+|++++|...+++.++  ..+.+. .+++|.++||++...
T Consensus        77 ~aDvvi~~vp~~~~~~~v~~~~~~l~~-~l~~g~~vv~~st~~  118 (310)
T 3doj_A           77 KCKYTIAMLSDPCAALSVVFDKGGVLE-QICEGKGYIDMSTVD  118 (310)
T ss_dssp             HCSEEEECCSSHHHHHHHHHSTTCGGG-GCCTTCEEEECSCCC
T ss_pred             hCCEEEEEcCCHHHHHHHHhCchhhhh-ccCCCCEEEECCCCC
Confidence            9999999999666666655  234566 899999999998654

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.12  E-value=2.4e-11  Score=108.63  Aligned_cols=91  Identities=20%  Similarity=0.264  Sum_probs=70.4

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~  231 (269)
                      +||||||+|.||..+|++|...|++|++|||++.+...                  +.+.+  ...++.++++++|+|++
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~------------------l~~~G~~~~~s~~e~~~~~dvvi~   67 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEP------------------LTKLGATVVENAIDAITPGGIVFS   67 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CT------------------TTTTTCEECSSGGGGCCTTCEEEE
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHH------------------HHHcCCeEeCCHHHHHhcCCceee
Confidence            58999999999999999999999999999998876321                  11111  23678899999999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ++|..+..+..+..+.+. .++++.++|+++=
T Consensus        68 ~l~~~~~~~~v~~~~~~~-~~~~~~iiid~sT   98 (297)
T 4gbj_A           68 VLADDAAVEELFSMELVE-KLGKDGVHVSMST   98 (297)
T ss_dssp             CCSSHHHHHHHSCHHHHH-HHCTTCEEEECSC
T ss_pred             eccchhhHHHHHHHHHHh-hcCCCeEEEECCC
Confidence            999777777788887888 9999999999863

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.08  E-value=2.9e-11  Score=108.30  Aligned_cols=98  Identities=17%  Similarity=0.133  Sum_probs=77.5

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCC
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  227 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  227 (269)
                      +...++|||||+|.||+.+|+.|...|++|++|||+..+...                 . ...+  ...++.++++++|
T Consensus         6 ~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~-----------------~-~~~g~~~~~~~~e~~~~aD   67 (306)
T 3l6d_A            6 ESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAA-----------------L-VAAGAHLCESVKAALSASP   67 (306)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHH-----------------H-HHHTCEECSSHHHHHHHSS
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-----------------H-HHCCCeecCCHHHHHhcCC
Confidence            456789999999999999999999999999999987654211                 1 1111  2468999999999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      +|++++|.+..++.++..+.+. .+++|.++||++....
T Consensus        68 vVi~~vp~~~~~~~v~~~~~l~-~~~~g~ivid~st~~~  105 (306)
T 3l6d_A           68 ATIFVLLDNHATHEVLGMPGVA-RALAHRTIVDYTTNAQ  105 (306)
T ss_dssp             EEEECCSSHHHHHHHHTSTTHH-HHTTTCEEEECCCCCT
T ss_pred             EEEEEeCCHHHHHHHhcccchh-hccCCCEEEECCCCCH
Confidence            9999999766677777643566 7889999999998754

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.08  E-value=5.2e-11  Score=107.28  Aligned_cols=97  Identities=23%  Similarity=0.260  Sum_probs=76.0

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCC
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  227 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  227 (269)
                      ....++|||||+|.||+.+|+.|...|++|++|||++.+...                 . .+.+  ...+++++++++|
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~-----------------l-~~~g~~~~~~~~e~~~~aD   89 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAAS-----------------L-AALGATIHEQARAAARDAD   89 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHH-----------------H-HTTTCEEESSHHHHHTTCS
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHH-----------------H-HHCCCEeeCCHHHHHhcCC
Confidence            345679999999999999999999999999999987654211                 1 1111  2368999999999


Q ss_pred             EEEEecCCCccccCcCCH-HHHhhhCCCCcEEEEccCCC
Q 024297          228 VVVCCLSLNKQTVKLCSS-SLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~-~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +|++++|....++.++.. +.+. .++++.++|+++.+.
T Consensus        90 vVi~~vp~~~~~~~v~~~~~~~~-~l~~~~~vi~~st~~  127 (320)
T 4dll_A           90 IVVSMLENGAVVQDVLFAQGVAA-AMKPGSLFLDMASIT  127 (320)
T ss_dssp             EEEECCSSHHHHHHHHTTTCHHH-HCCTTCEEEECSCCC
T ss_pred             EEEEECCCHHHHHHHHcchhHHh-hCCCCCEEEecCCCC
Confidence            999999976666666642 4667 899999999999865

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.08  E-value=2.7e-11  Score=108.49  Aligned_cols=91  Identities=21%  Similarity=0.243  Sum_probs=72.3

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~  231 (269)
                      ++||+||+|.||..+|++|...|++|++|||++.+..                 .+. ..+  ...+..++++.+|+|++
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~-----------------~l~-~~Ga~~a~s~~e~~~~~dvv~~   65 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVD-----------------GLV-AAGASAARSARDAVQGADVVIS   65 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHH-----------------HHH-HTTCEECSSHHHHHTTCSEEEE
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHH-----------------HHH-HcCCEEcCCHHHHHhcCCceee
Confidence            5899999999999999999999999999999865521                 111 112  34689999999999999


Q ss_pred             ecCCCccccCcCCH--HHHhhhCCCCcEEEEccC
Q 024297          232 CLSLNKQTVKLCSS--SLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       232 ~lp~t~~t~~li~~--~~l~~~mk~ga~lIN~~R  263 (269)
                      |+|..++.+.++..  ..++ .+++|.++|+++=
T Consensus        66 ~l~~~~~v~~V~~~~~g~~~-~~~~g~iiId~sT   98 (300)
T 3obb_A           66 MLPASQHVEGLYLDDDGLLA-HIAPGTLVLECST   98 (300)
T ss_dssp             CCSCHHHHHHHHHSSSSSTT-SCCC-CEEEECSC
T ss_pred             cCCchHHHHHHHhchhhhhh-cCCCCCEEEECCC
Confidence            99988877776532  2567 8999999999873

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.04  E-value=1.8e-10  Score=101.91  Aligned_cols=93  Identities=17%  Similarity=0.158  Sum_probs=73.3

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~  231 (269)
                      ++|||||+|.||+.+|+.|...|++|++|||+..+...                  ..+.+  ...+++++++++|+|++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~------------------~~~~g~~~~~~~~~~~~~aDvvi~   63 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEE------------------LAALGAERAATPCEVVESCPVTFA   63 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHH------------------HHHTTCEECSSHHHHHHHCSEEEE
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHH------------------HHHCCCeecCCHHHHHhcCCEEEE
Confidence            68999999999999999999999999999998655211                  11111  23689999999999999


Q ss_pred             ecCCCccccCcC--CHHHHhhhCCCCcEEEEccCCC
Q 024297          232 CLSLNKQTVKLC--SSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       232 ~lp~t~~t~~li--~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      ++|...+++..+  +++.+. .+++|.++||++...
T Consensus        64 ~vp~~~~~~~v~~~~~~l~~-~l~~~~~vi~~st~~   98 (287)
T 3pef_A           64 MLADPAAAEEVCFGKHGVLE-GIGEGRGYVDMSTVD   98 (287)
T ss_dssp             CCSSHHHHHHHHHSTTCHHH-HCCTTCEEEECSCCC
T ss_pred             EcCCHHHHHHHHcCcchHhh-cCCCCCEEEeCCCCC
Confidence            999666666665  234567 899999999998654

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.04  E-value=2.1e-10  Score=102.15  Aligned_cols=92  Identities=15%  Similarity=0.202  Sum_probs=73.9

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEE
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVV  230 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv  230 (269)
                      .++|||||+|.||+.+|+.|...|++|++|||++.+...                  ..+.+  ...+++++++ +|+|+
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~------------------~~~~g~~~~~~~~~~~~-aDvvi   75 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTP------------------LAEAGATLADSVADVAA-ADLIH   75 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHH------------------HHHTTCEECSSHHHHTT-SSEEE
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHH------------------HHHCCCEEcCCHHHHHh-CCEEE
Confidence            368999999999999999999999999999998765211                  11111  2368999999 99999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +++|.+++++..+ .+.+. .++++.++||++...
T Consensus        76 ~~vp~~~~~~~v~-~~l~~-~l~~g~ivv~~st~~  108 (296)
T 3qha_A           76 ITVLDDAQVREVV-GELAG-HAKPGTVIAIHSTIS  108 (296)
T ss_dssp             ECCSSHHHHHHHH-HHHHT-TCCTTCEEEECSCCC
T ss_pred             EECCChHHHHHHH-HHHHH-hcCCCCEEEEeCCCC
Confidence            9999766677766 55677 899999999998764

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=99.01  E-value=1.7e-09  Score=99.03  Aligned_cols=195  Identities=14%  Similarity=0.026  Sum_probs=117.3

Q ss_pred             hhcCCceEEEEeCCCCCHHHHhcCCCceEEEEccccCCccchhhHhcCCcEEEec---CCCCC--CCcchHHHHHH--HH
Q 024297           51 DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARI---PGDVT--GNAASCAELTI--YL  123 (269)
Q Consensus        51 ~~~~~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~---~~~~~--~~~~~vAE~~l--~~  123 (269)
                      +.+ ++|+++....+...+.....+++.++......++.-.++.+.+.|+...|.   |....  ..-.++++.+-  +.
T Consensus        63 ~~~-~ad~i~~vksP~~~~~~~~~~g~~~~~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~  141 (361)
T 1pjc_A           63 DAW-SREMVVKVKEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSV  141 (361)
T ss_dssp             HHH-TSSEEECSSCCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHH
T ss_pred             HHh-cCCeEEEECCCCHHHHHhhcCCCEEEEEeccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHH
Confidence            445 789877544444333333346777776666666655566778889888764   43210  01134444443  22


Q ss_pred             HHHHhhcHHHHHHHHHhC--CCCCCccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhh
Q 024297          124 MLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV  201 (269)
Q Consensus       124 ~L~~~R~~~~~~~~~~~~--~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~  201 (269)
                      +++.. ++...    ..+  .+.... ..+.+++|+|+|.|.+|+.+++.++.+|++|+++|++..+.......      
T Consensus       142 ~~gA~-nt~~~----~~g~G~~l~~l-~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~------  209 (361)
T 1pjc_A          142 QFGAR-FLERQ----QGGRGVLLGGV-PGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETL------  209 (361)
T ss_dssp             HHHHH-HTSGG----GTSCCCCTTCB-TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH------
T ss_pred             HHHHH-HHhhc----cCCCceeccCC-CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHh------
Confidence            32221 11110    111  111111 34778999999999999999999999999999999976542111000      


Q ss_pred             ccccccccccccCCCCCHHHHHhhCCEEEEecCCCc-cccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          202 KNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNK-QTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       202 ~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~-~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                        +. ...........++.+.+..+|+|+.+.+... .+..++.++.++ .|++++++++++
T Consensus       210 --~~-~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~-~~~~g~~ivdv~  267 (361)
T 1pjc_A          210 --FG-SRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVE-QMRTGSVIVDVA  267 (361)
T ss_dssp             --HG-GGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHT-TSCTTCEEEETT
T ss_pred             --hC-ceeEeeeCCHHHHHHHHcCCCEEEECCCcCCCCCCeecCHHHHh-hCCCCCEEEEEe
Confidence              00 0000000012356778889999999987533 245667888999 999999999998

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.01  E-value=1.3e-10  Score=102.73  Aligned_cols=93  Identities=17%  Similarity=0.161  Sum_probs=73.1

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~  231 (269)
                      ++|||||+|.||..+|+.|...|++|++|||++.+...                  ..+.+  ...+++++++++|+|++
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~------------------~~~~g~~~~~~~~~~~~~advvi~   63 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAP------------------LVALGARQASSPAEVCAACDITIA   63 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHH------------------HHHHTCEECSCHHHHHHHCSEEEE
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHH------------------HHHCCCeecCCHHHHHHcCCEEEE
Confidence            47999999999999999999999999999998655211                  11111  23689999999999999


Q ss_pred             ecCCCccccCcC--CHHHHhhhCCCCcEEEEccCCC
Q 024297          232 CLSLNKQTVKLC--SSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       232 ~lp~t~~t~~li--~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      ++|.+++++.++  ..+.+. .+++|.++||++.+.
T Consensus        64 ~v~~~~~~~~v~~~~~~l~~-~l~~g~~vv~~st~~   98 (287)
T 3pdu_A           64 MLADPAAAREVCFGANGVLE-GIGGGRGYIDMSTVD   98 (287)
T ss_dssp             CCSSHHHHHHHHHSTTCGGG-TCCTTCEEEECSCCC
T ss_pred             EcCCHHHHHHHHcCchhhhh-cccCCCEEEECCCCC
Confidence            999665666665  133566 899999999999865

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.00  E-value=4.5e-10  Score=100.13  Aligned_cols=99  Identities=19%  Similarity=0.163  Sum_probs=70.2

Q ss_pred             HHHHHHHHhCCCCCCccccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccc
Q 024297          132 NEMRMAIEQKKLGVPTGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV  210 (269)
Q Consensus       132 ~~~~~~~~~~~w~~~~~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (269)
                      ++++.+++++.|.....   ..++|+||| +|.||..+|+.|+..|++|++++++..                       
T Consensus         3 ~~~~~~~~~~~~~~~~~---~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~-----------------------   56 (298)
T 2pv7_A            3 RESYANENQFGFKTINS---DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW-----------------------   56 (298)
T ss_dssp             ----------CCCCSCT---TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG-----------------------
T ss_pred             hhHHhhhhccCccccCC---CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc-----------------------
Confidence            34556777788864321   356899999 999999999999999999999997532                       


Q ss_pred             cccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          211 DEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       211 ~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                            .+..+++++||+|++++|.. .+..++.. ... .+++++++++++...
T Consensus        57 ------~~~~~~~~~aDvVilavp~~-~~~~vl~~-l~~-~l~~~~iv~~~~svk  102 (298)
T 2pv7_A           57 ------AVAESILANADVVIVSVPIN-LTLETIER-LKP-YLTENMLLADLTSVK  102 (298)
T ss_dssp             ------GGHHHHHTTCSEEEECSCGG-GHHHHHHH-HGG-GCCTTSEEEECCSCC
T ss_pred             ------cCHHHHhcCCCEEEEeCCHH-HHHHHHHH-HHh-hcCCCcEEEECCCCC
Confidence                  14667889999999999954 46666643 455 799999999987643

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.00  E-value=4.2e-10  Score=101.00  Aligned_cols=109  Identities=15%  Similarity=0.131  Sum_probs=69.2

Q ss_pred             HHHHhCCCCC----CccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCC-CCccccccccchhhhcccccccc
Q 024297          136 MAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW-ASHSQVSCQSSALAVKNGIIDDL  209 (269)
Q Consensus       136 ~~~~~~~w~~----~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  209 (269)
                      +..+++.|..    +.......++|||||+|.||..+|+.|...|+ +|++||++. .....                 .
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~-----------------~   65 (312)
T 3qsg_A            3 HHHHHSSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRP-----------------R   65 (312)
T ss_dssp             ----------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHH-----------------H
T ss_pred             cccccccccccCcccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHH-----------------H
Confidence            3444555542    22223345799999999999999999999999 999999963 22111                 1


Q ss_pred             ccccC--CCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          210 VDEKG--CHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       210 ~~~~~--~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      ....+  ...++.+++++||+|++++|...... .+ .+... .+++++++||++..
T Consensus        66 ~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~-~~-~~l~~-~l~~~~ivvd~st~  119 (312)
T 3qsg_A           66 AEELGVSCKASVAEVAGECDVIFSLVTAQAALE-VA-QQAGP-HLCEGALYADFTSC  119 (312)
T ss_dssp             HHHTTCEECSCHHHHHHHCSEEEECSCTTTHHH-HH-HHHGG-GCCTTCEEEECCCC
T ss_pred             HHHCCCEEeCCHHHHHhcCCEEEEecCchhHHH-HH-HhhHh-hcCCCCEEEEcCCC
Confidence            11111  23688999999999999999665443 33 44666 89999999998754

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=98.99  E-value=1.5e-10  Score=100.45  Aligned_cols=109  Identities=14%  Similarity=0.150  Sum_probs=66.1

Q ss_pred             CCccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC--ccccccccchhhhccccccccccccC--CCCCHH
Q 024297          145 VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIF  220 (269)
Q Consensus       145 ~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~  220 (269)
                      .....++.+++|||||+|.||+.+|+.|...|++|++|+|+..+  .......     ..+..........+  ...++.
T Consensus        11 ~~~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~   85 (245)
T 3dtt_A           11 HHENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDA-----MGAPPFSQWLPEHPHVHLAAFA   85 (245)
T ss_dssp             --------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC------------CCHHHHGGGSTTCEEEEHH
T ss_pred             cccccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhh-----hcchhhhHHHhhcCceeccCHH
Confidence            34567899999999999999999999999999999999987643  0000000     00000001111111  235788


Q ss_pred             HHHhhCCEEEEecCCCccccCcCCHHH-HhhhCCCCcEEEEcc
Q 024297          221 EFASKADVVVCCLSLNKQTVKLCSSSL-SSKSMFFATYVVFMF  262 (269)
Q Consensus       221 ell~~aDvvv~~lp~t~~t~~li~~~~-l~~~mk~ga~lIN~~  262 (269)
                      +++++||+|++++|.... ...+. +. .. .+ ++.++|+++
T Consensus        86 e~~~~aDvVilavp~~~~-~~~~~-~i~~~-~l-~g~ivi~~s  124 (245)
T 3dtt_A           86 DVAAGAELVVNATEGASS-IAALT-AAGAE-NL-AGKILVDIA  124 (245)
T ss_dssp             HHHHHCSEEEECSCGGGH-HHHHH-HHCHH-HH-TTSEEEECC
T ss_pred             HHHhcCCEEEEccCcHHH-HHHHH-Hhhhh-hc-CCCEEEECC
Confidence            999999999999995533 23322 22 23 44 899999998

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=98.99  E-value=1.9e-10  Score=100.74  Aligned_cols=165  Identities=17%  Similarity=0.134  Sum_probs=109.8

Q ss_pred             CCCCChhhhcCCce----EEEEeCCCCCHHHHhcCCCceEEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHHH
Q 024297           44 VPISDVPDVIANYH----LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAEL  119 (269)
Q Consensus        44 ~~~~~~~~~~~~~d----v~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~  119 (269)
                      .+.+++.+.++..+    .+.+ +.++.++++..++.+..++....|+|.++.    +.|-    ..|+   |...    
T Consensus        38 ~~~~~l~~~i~~l~~~~~G~~v-t~P~k~~i~~~~~~l~~~a~~~gavn~i~~----~~g~----~~g~---ntd~----  101 (263)
T 2d5c_A           38 TPLEALPGRLKEVRRAFRGVNL-TLPLKEAALAHLDWVSPEAQRIGAVNTVLQ----VEGR----LFGF---NTDA----  101 (263)
T ss_dssp             CCGGGHHHHHHHHHHHCSEEEE-CTTCTTGGGGGCSEECHHHHHHTCCCEEEE----ETTE----EEEE---CCHH----
T ss_pred             CCHHHHHHHHHhccccCceEEE-cccCHHHHHHHHHHHhHHHHHhCCCCcEEc----cCCe----EEEe---CCCH----
Confidence            35556655554432    2222 457888888888888888888889998864    3342    2233   2221    


Q ss_pred             HHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchh
Q 024297          120 TIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL  199 (269)
Q Consensus       120 ~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~  199 (269)
                       .+++.++.|                 .+.++.| +++|||+|.+|+++++.|...|++|++++|+.++...        
T Consensus       102 -~g~~~~l~~-----------------~~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~--------  154 (263)
T 2d5c_A          102 -PGFLEALKA-----------------GGIPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALA--------  154 (263)
T ss_dssp             -HHHHHHHHH-----------------TTCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHH--------
T ss_pred             -HHHHHHHHH-----------------hCCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH--------
Confidence             233333322                 1346889 9999999999999999999999999999987543110        


Q ss_pred             hhccccccccccccC-CCCCHHHHHhhCCEEEEecCCCc--cccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          200 AVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNK--QTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       200 ~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~~lp~t~--~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                               .....+ ...+++++ +++|+|++++|...  ++...++   .. .+++|+++++++.++
T Consensus       155 ---------l~~~~~~~~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~---~~-~l~~g~~viD~~~~p  209 (263)
T 2d5c_A          155 ---------LAEEFGLRAVPLEKA-REARLLVNATRVGLEDPSASPLP---AE-LFPEEGAAVDLVYRP  209 (263)
T ss_dssp             ---------HHHHHTCEECCGGGG-GGCSEEEECSSTTTTCTTCCSSC---GG-GSCSSSEEEESCCSS
T ss_pred             ---------HHHHhccchhhHhhc-cCCCEEEEccCCCCCCCCCCCCC---HH-HcCCCCEEEEeecCC
Confidence                     111100 12466777 99999999999763  3334454   45 789999999999874

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=98.98  E-value=5.4e-10  Score=102.39  Aligned_cols=95  Identities=18%  Similarity=0.213  Sum_probs=74.3

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccc-cCCCCCHHHHHhhC---
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KGCHEDIFEFASKA---  226 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~~a---  226 (269)
                      +..++|||||+|.||+.+|+.|...|++|++|||+..+...                 .... .....+++++++.+   
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~-----------------l~~~g~~~~~s~~e~~~~a~~~   82 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQA-----------------LEREGIAGARSIEEFCAKLVKP   82 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH-----------------HHTTTCBCCSSHHHHHHHSCSS
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHH-----------------HHHCCCEEeCCHHHHHhcCCCC
Confidence            56789999999999999999999999999999997654211                 1110 01346899999999   


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      |+|++++|.. .++.++ .+.+. .+++|.++|+++.+.
T Consensus        83 DvVi~~vp~~-~v~~vl-~~l~~-~l~~g~iiId~st~~  118 (358)
T 4e21_A           83 RVVWLMVPAA-VVDSML-QRMTP-LLAANDIVIDGGNSH  118 (358)
T ss_dssp             CEEEECSCGG-GHHHHH-HHHGG-GCCTTCEEEECSSCC
T ss_pred             CEEEEeCCHH-HHHHHH-HHHHh-hCCCCCEEEeCCCCC
Confidence            9999999966 777776 44667 899999999998765

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=98.96  E-value=3.4e-10  Score=101.95  Aligned_cols=118  Identities=13%  Similarity=0.016  Sum_probs=73.0

Q ss_pred             HHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhccccccccccc
Q 024297          134 MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE  212 (269)
Q Consensus       134 ~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (269)
                      ++.+.+...|.......--.++|||||+|.||..+|+.|...| ++|++||++..........           .+....
T Consensus         5 ~~~~~~~~~~~~~~~~~~M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~-----------~~~~~~   73 (317)
T 4ezb_A            5 HHHSSGVDLGTENLYFQSMMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGAL-----------RARAAE   73 (317)
T ss_dssp             ----------CCCHHHHTSCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHH-----------HHHHHH
T ss_pred             cccccccccCcccCcccccCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHH-----------HHHHHH
Confidence            3444445556543211113478999999999999999999999 9999999875310000000           000000


Q ss_pred             cCCCC-CHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          213 KGCHE-DIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       213 ~~~~~-~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      .+... ++.+++++||+|++++|.......+  .+... .+++++++|+++...
T Consensus        74 ~g~~~~s~~e~~~~aDvVi~avp~~~~~~~~--~~i~~-~l~~~~ivv~~st~~  124 (317)
T 4ezb_A           74 LGVEPLDDVAGIACADVVLSLVVGAATKAVA--ASAAP-HLSDEAVFIDLNSVG  124 (317)
T ss_dssp             TTCEEESSGGGGGGCSEEEECCCGGGHHHHH--HHHGG-GCCTTCEEEECCSCC
T ss_pred             CCCCCCCHHHHHhcCCEEEEecCCHHHHHHH--HHHHh-hcCCCCEEEECCCCC
Confidence            11134 6778899999999999966554443  55666 899999999998653

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=98.96  E-value=2.8e-10  Score=107.17  Aligned_cols=107  Identities=22%  Similarity=0.230  Sum_probs=74.3

Q ss_pred             CCCCCc-cccccC-CEEEEEecCchHHHHHHHhccC------CCEEEEEcCCCCCccccccccchhhhccccccccccc-
Q 024297          142 KLGVPT-GETLLG-KTVFILGFGNIGVELAKRLRPF------GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-  212 (269)
Q Consensus       142 ~w~~~~-~~~l~g-~~vgIiG~G~iG~~~a~~l~~~------G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  212 (269)
                      +|..+. ...+.| ++|||||+|+||.++|+.|+..      |++|++..++..+......       ..     .+.. 
T Consensus        41 ~w~~~~~~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~-------e~-----G~~v~  108 (525)
T 3fr7_A           41 RNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEAR-------AA-----GFTEE  108 (525)
T ss_dssp             GGGGGGHHHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH-------HT-----TCCTT
T ss_pred             ccccccChHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHH-------HC-----CCEEe
Confidence            455333 467999 9999999999999999999988      9998877665433111000       00     1110 


Q ss_pred             cCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          213 KGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       213 ~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      .....++.+++++||+|++++|..... .++. +.+. .||+|++| -.+-|
T Consensus       109 d~ta~s~aEAa~~ADVVILaVP~~~~~-eVl~-eI~p-~LK~GaIL-s~AaG  156 (525)
T 3fr7_A          109 SGTLGDIWETVSGSDLVLLLISDAAQA-DNYE-KIFS-HMKPNSIL-GLSHG  156 (525)
T ss_dssp             TTCEEEHHHHHHHCSEEEECSCHHHHH-HHHH-HHHH-HSCTTCEE-EESSS
T ss_pred             cCCCCCHHHHHhcCCEEEECCChHHHH-HHHH-HHHH-hcCCCCeE-EEeCC
Confidence            001257899999999999999976553 4665 5778 99999985 55555

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.50  E-value=7.3e-11  Score=99.67  Aligned_cols=92  Identities=18%  Similarity=0.155  Sum_probs=71.2

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      +.+++|+|||+|+||+.+|+.|...|++|++++|+... ..                 ....-....++.++++++|+|+
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~-~~-----------------~~~~g~~~~~~~~~~~~aDvVi   78 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQV-SS-----------------LLPRGAEVLCYSEAASRSDVIV   78 (201)
Confidence            67789999999999999999999999999999987542 10                 0000001236778889999999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +++|.. +++.++   .+. .+++++++||+++|-
T Consensus        79 lav~~~-~~~~v~---~l~-~~~~~~ivI~~~~G~  108 (201)
T 2yjz_A           79 LAVHRE-HYDFLA---ELA-DSLKGRVLIDVSNNQ  108 (201)
Confidence            999964 677776   245 577899999999986

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=98.95  E-value=1.3e-10  Score=103.75  Aligned_cols=94  Identities=17%  Similarity=0.130  Sum_probs=72.2

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--C-CCCHHHHHhhCCEE
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--C-HEDIFEFASKADVV  229 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~l~ell~~aDvv  229 (269)
                      .++|||||+|.||..+|+.|...|++|++|||++.+...                  ..+.+  . ..++++++++||+|
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~------------------~~~~g~~~~~~~~~e~~~~aDvv   68 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACAN------------------LLAEGACGAAASAREFAGVVDAL   68 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH------------------HHHTTCSEEESSSTTTTTTCSEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHH------------------HHHcCCccccCCHHHHHhcCCEE
Confidence            468999999999999999999999999999987654211                  01111  1 35677888999999


Q ss_pred             EEecCCCccccCcCC--HHHHhhhCCCCcEEEEccCCC
Q 024297          230 VCCLSLNKQTVKLCS--SSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       230 v~~lp~t~~t~~li~--~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      ++++|.+..++.++.  ++.+. .+++++++||++...
T Consensus        69 i~~vp~~~~~~~v~~~~~~l~~-~l~~g~ivv~~st~~  105 (303)
T 3g0o_A           69 VILVVNAAQVRQVLFGEDGVAH-LMKPGSAVMVSSTIS  105 (303)
T ss_dssp             EECCSSHHHHHHHHC--CCCGG-GSCTTCEEEECSCCC
T ss_pred             EEECCCHHHHHHHHhChhhHHh-hCCCCCEEEecCCCC
Confidence            999996666666652  33566 899999999998764

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.95  E-value=1.4e-09  Score=86.43  Aligned_cols=96  Identities=15%  Similarity=0.162  Sum_probs=71.4

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      +++|+|||.|.||+.+++.|...|++|++++|+..+......             ..........++.++++++|+|+++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~-------------~~~~~~~~~~~~~~~~~~~Divi~a   87 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAE-------------KYEYEYVLINDIDSLIKNNDVIITA   87 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHH-------------HHTCEEEECSCHHHHHHTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHH-------------HhCCceEeecCHHHHhcCCCEEEEe
Confidence            889999999999999999999999999999987654211000             0000011346889999999999999


Q ss_pred             cCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCcc
Q 024297          233 LSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVS  268 (269)
Q Consensus       233 lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vd  268 (269)
                      +|.+   ..+++.   + .+++|..+++++...-+|
T Consensus        88 t~~~---~~~~~~---~-~l~~g~~vid~~~p~~~~  116 (144)
T 3oj0_A           88 TSSK---TPIVEE---R-SLMPGKLFIDLGNPPNIE  116 (144)
T ss_dssp             SCCS---SCSBCG---G-GCCTTCEEEECCSSCSBC
T ss_pred             CCCC---CcEeeH---H-HcCCCCEEEEccCCccCC
Confidence            8854   455655   4 678899999999865554

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=98.88  E-value=4.8e-10  Score=101.85  Aligned_cols=94  Identities=22%  Similarity=0.282  Sum_probs=70.9

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD  227 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD  227 (269)
                      ..+.+++|+|||+|.||+++|+.|+..|++|++++++..+....                 ....+ ...++++++++||
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~-----------------a~~~G~~~~~~~e~~~~aD   74 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAK-----------------AEAHGLKVADVKTAVAAAD   74 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHH-----------------HHHTTCEEECHHHHHHTCS
T ss_pred             chhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHH-----------------HHHCCCEEccHHHHHhcCC
Confidence            46889999999999999999999999999999999876431110                 01111 1127889999999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      +|++++|.. ....++.++... .++++++++.+
T Consensus        75 vVilavp~~-~~~~v~~~~i~~-~l~~~~ivi~~  106 (338)
T 1np3_A           75 VVMILTPDE-FQGRLYKEEIEP-NLKKGATLAFA  106 (338)
T ss_dssp             EEEECSCHH-HHHHHHHHHTGG-GCCTTCEEEES
T ss_pred             EEEEeCCcH-HHHHHHHHHHHh-hCCCCCEEEEc
Confidence            999999954 345565544556 89999999965

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=98.86  E-value=1.1e-09  Score=98.49  Aligned_cols=97  Identities=28%  Similarity=0.221  Sum_probs=70.0

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHH-HHhhCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE-FASKAD  227 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aD  227 (269)
                      +.-++|||||+|.||..+|+.|+..|+  +|++||++.......        ...|.+    +.  ...++++ ++++||
T Consensus        31 ~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a--------~~~G~~----~~--~~~~~~~~~~~~aD   96 (314)
T 3ggo_A           31 LSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA--------VDLGII----DE--GTTSIAKVEDFSPD   96 (314)
T ss_dssp             CSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH--------HHTTSC----SE--EESCTTGGGGGCCS
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHH--------HHCCCc----ch--hcCCHHHHhhccCC
Confidence            445899999999999999999999999  999999876431110        001110    00  1246677 899999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +|++++|.. .+..++ ++... .+++++++++++-.
T Consensus        97 vVilavp~~-~~~~vl-~~l~~-~l~~~~iv~d~~Sv  130 (314)
T 3ggo_A           97 FVMLSSPVR-TFREIA-KKLSY-ILSEDATVTDQGSV  130 (314)
T ss_dssp             EEEECSCGG-GHHHHH-HHHHH-HSCTTCEEEECCSC
T ss_pred             EEEEeCCHH-HHHHHH-HHHhh-ccCCCcEEEECCCC
Confidence            999999955 444554 44566 79999999998754

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=98.84  E-value=1.3e-09  Score=96.54  Aligned_cols=95  Identities=19%  Similarity=0.171  Sum_probs=72.3

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l  233 (269)
                      ++|+|||+|.||+.+++.|...|++|++++++..+... ...       .|     .   ....+++++++++|+|++++
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~-~~~-------~g-----~---~~~~~~~~~~~~~D~vi~~v   68 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAA-VVA-------QG-----A---QACENNQKVAAASDIIFTSL   68 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHH-HHT-------TT-----C---EECSSHHHHHHHCSEEEECC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHH-HHH-------CC-----C---eecCCHHHHHhCCCEEEEEC
Confidence            58999999999999999999999999999987543110 000       00     0   02357889999999999999


Q ss_pred             CCCccccCcCC--HHHHhhhCCCCcEEEEccCCC
Q 024297          234 SLNKQTVKLCS--SSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       234 p~t~~t~~li~--~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      |.+.+++.++.  .+... .+++++++|+++.|.
T Consensus        69 p~~~~~~~v~~~~~~l~~-~l~~~~~vv~~~~~~  101 (301)
T 3cky_A           69 PNAGIVETVMNGPGGVLS-ACKAGTVIVDMSSVS  101 (301)
T ss_dssp             SSHHHHHHHHHSTTCHHH-HSCTTCEEEECCCCC
T ss_pred             CCHHHHHHHHcCcchHhh-cCCCCCEEEECCCCC
Confidence            96666666664  24556 799999999999875

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=98.83  E-value=1.9e-09  Score=102.35  Aligned_cols=103  Identities=14%  Similarity=0.094  Sum_probs=75.0

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh---
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK---  225 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---  225 (269)
                      ...+.++|||||+|.||+.+|+.|...|++|.+|+|+.++.......     .+ |   ..   .....+++++++.   
T Consensus        11 ~~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~-----~~-~---~g---i~~~~s~~e~v~~l~~   78 (480)
T 2zyd_A           11 HHMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAE-----NP-G---KK---LVPYYTVKEFVESLET   78 (480)
T ss_dssp             ----CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHH-----ST-T---SC---EEECSSHHHHHHTBCS
T ss_pred             cccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhh-----CC-C---CC---eEEeCCHHHHHhCCCC
Confidence            34677899999999999999999999999999999976542110000     00 0   00   0123578898887   


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +|+|++++|..+.++.++. +... .+++|.++|+++.|.
T Consensus        79 aDvVil~Vp~~~~v~~vl~-~l~~-~l~~g~iIId~s~g~  116 (480)
T 2zyd_A           79 PRRILLMVKAGAGTDAAID-SLKP-YLDKGDIIIDGGNTF  116 (480)
T ss_dssp             SCEEEECSCSSSHHHHHHH-HHGG-GCCTTCEEEECSCCC
T ss_pred             CCEEEEECCCHHHHHHHHH-HHHh-hcCCCCEEEECCCCC
Confidence            9999999997777888874 4666 899999999999875

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=98.83  E-value=1.5e-09  Score=96.05  Aligned_cols=95  Identities=16%  Similarity=0.192  Sum_probs=71.7

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l  233 (269)
                      .+|+|||+|.||+.+++.|...|++|.+++++..+... ..       ..|     .   ....+++++++++|+|++++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~-~~-------~~g-----~---~~~~~~~~~~~~~D~vi~~v   69 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIAD-VI-------AAG-----A---ETASTAKAIAEQCDVIITML   69 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHH-HH-------HTT-----C---EECSSHHHHHHHCSEEEECC
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHH-HH-------HCC-----C---eecCCHHHHHhCCCEEEEEC
Confidence            48999999999999999999999999999987543110 00       000     0   02357889999999999999


Q ss_pred             CCCccccCcCC--HHHHhhhCCCCcEEEEccCCC
Q 024297          234 SLNKQTVKLCS--SSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       234 p~t~~t~~li~--~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      |.+.+++.++.  ++... .+++++++|+++.|.
T Consensus        70 ~~~~~~~~~~~~~~~l~~-~l~~~~~vv~~s~~~  102 (299)
T 1vpd_A           70 PNSPHVKEVALGENGIIE-GAKPGTVLIDMSSIA  102 (299)
T ss_dssp             SSHHHHHHHHHSTTCHHH-HCCTTCEEEECSCCC
T ss_pred             CCHHHHHHHHhCcchHhh-cCCCCCEEEECCCCC
Confidence            96666666652  23456 899999999999875

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=98.81  E-value=1.4e-09  Score=96.21  Aligned_cols=110  Identities=15%  Similarity=0.073  Sum_probs=72.5

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcccccccc---chhhhccc-cc-----cccccccCCCCCHHHHHh
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQS---SALAVKNG-II-----DDLVDEKGCHEDIFEFAS  224 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~---~~~~~~~~-~~-----~~~~~~~~~~~~l~ell~  224 (269)
                      ++|+|||.|.||..+|+.+...|++|+++|++...........   .....+.| .+     +..........+++++++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            6899999999999999999999999999998765321110000   00000000 00     000000112368889999


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +||+|+.++|.+.+...-+-++... .+++++++++.+.+
T Consensus        85 ~aDlVi~av~~~~~~~~~v~~~l~~-~~~~~~il~s~tS~  123 (283)
T 4e12_A           85 DADLVIEAVPESLDLKRDIYTKLGE-LAPAKTIFATNSST  123 (283)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHH-HSCTTCEEEECCSS
T ss_pred             cCCEEEEeccCcHHHHHHHHHHHHh-hCCCCcEEEECCCC
Confidence            9999999999876666655566667 89999999955443

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=98.81  E-value=1.8e-09  Score=95.48  Aligned_cols=92  Identities=18%  Similarity=0.212  Sum_probs=69.2

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~  231 (269)
                      ++|+|||+|.||+.+++.|...|++|++++|+..+...                  ..+.+  ...+++++++++|+|++
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~------------------~~~~g~~~~~~~~~~~~~~Dvvi~   62 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKE------------------FQDAGEQVVSSPADVAEKADRIIT   62 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHH------------------HHTTTCEECSSHHHHHHHCSEEEE
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHH------------------HHHcCCeecCCHHHHHhcCCEEEE
Confidence            37999999999999999999999999999987644110                  11111  23578899999999999


Q ss_pred             ecCCCccccCcCCH--HHHhhhCCCCcEEEEccCC
Q 024297          232 CLSLNKQTVKLCSS--SLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       232 ~lp~t~~t~~li~~--~~l~~~mk~ga~lIN~~RG  264 (269)
                      ++|.+..++.++..  ..+. .+++++++|+++..
T Consensus        63 ~vp~~~~~~~v~~~~~~~~~-~l~~~~~vv~~s~~   96 (296)
T 2gf2_A           63 MLPTSINAIEAYSGANGILK-KVKKGSLLIDSSTI   96 (296)
T ss_dssp             CCSSHHHHHHHHHSTTSGGG-TCCTTCEEEECSCC
T ss_pred             eCCCHHHHHHHHhCchhHHh-cCCCCCEEEECCCC
Confidence            99866666665533  2455 68999999997654

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=98.79  E-value=2.7e-09  Score=94.22  Aligned_cols=94  Identities=15%  Similarity=0.089  Sum_probs=70.2

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l  233 (269)
                      ++|+|||+|.||+.+|+.|...|++|++++ +..+... ...       .|        .....+++++++++|+|++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~-~~~-------~g--------~~~~~~~~~~~~~~D~vi~~v   66 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADE-LLS-------LG--------AVNVETARQVTEFADIIFIMV   66 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHH-HHT-------TT--------CBCCSSHHHHHHTCSEEEECC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHH-HHH-------cC--------CcccCCHHHHHhcCCEEEEEC
Confidence            489999999999999999999999999998 6544211 100       00        012467889999999999999


Q ss_pred             CCCccccCcCCH--HHHhhhCCCCcEEEEccCCC
Q 024297          234 SLNKQTVKLCSS--SLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       234 p~t~~t~~li~~--~~l~~~mk~ga~lIN~~RG~  265 (269)
                      |...+++.++..  +... .+++++++|+++.|.
T Consensus        67 p~~~~~~~v~~~~~~l~~-~l~~~~~vv~~s~~~   99 (295)
T 1yb4_A           67 PDTPQVEDVLFGEHGCAK-TSLQGKTIVDMSSIS   99 (295)
T ss_dssp             SSHHHHHHHHHSTTSSTT-SCCTTEEEEECSCCC
T ss_pred             CCHHHHHHHHhCchhHhh-cCCCCCEEEECCCCC
Confidence            966555555532  3445 789999999999875

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.79  E-value=5.2e-09  Score=95.97  Aligned_cols=95  Identities=20%  Similarity=0.206  Sum_probs=72.2

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHh-hCC
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS-KAD  227 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~-~aD  227 (269)
                      ++.|++|+|+|+|+||+.+|+.|..+|++|+++|++..+- .                .....++ ...+.++++. +||
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l-~----------------~~a~~~ga~~v~~~~ll~~~~D  232 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAV-S----------------AAVAEEGADAVAPNAIYGVTCD  232 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH-H----------------HHHHHHCCEECCGGGTTTCCCS
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHH-H----------------HHHHHcCCEEEChHHHhccCCc
Confidence            7999999999999999999999999999999999764321 0                0111111 1234445555 899


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCcc
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVS  268 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vd  268 (269)
                      +++.|     .+.++|+.+.++ .|+ ..+++|.+++++.+
T Consensus       233 Ivip~-----a~~~~I~~~~~~-~lg-~~iV~e~An~p~t~  266 (364)
T 1leh_A          233 IFAPC-----ALGAVLNDFTIP-QLK-AKVIAGSADNQLKD  266 (364)
T ss_dssp             EEEEC-----SCSCCBSTTHHH-HCC-CSEECCSCSCCBSS
T ss_pred             Eeecc-----chHHHhCHHHHH-hCC-CcEEEeCCCCCccc
Confidence            99987     367799988888 884 67999999999765

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=98.79  E-value=4.5e-09  Score=99.77  Aligned_cols=99  Identities=11%  Similarity=0.120  Sum_probs=74.3

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccccc-ccCCCCCHHHHHh---hCCE
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFAS---KADV  228 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~---~aDv  228 (269)
                      .++|||||+|.||..+|+.|...|++|++|||+..+......        .+    ... ......+++++++   ++|+
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~--------~g----~~g~~i~~~~s~~e~v~~l~~aDv   71 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA--------NE----AKGTKVVGAQSLKEMVSKLKKPRR   71 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHH--------TT----TTTSSCEECSSHHHHHHTBCSSCE
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh--------cc----cCCCceeccCCHHHHHhhccCCCE
Confidence            368999999999999999999999999999998754211000        00    000 0001367888887   4999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      |++++|..+.++.++ .+.+. .|++|.++|+++.+.
T Consensus        72 Vil~Vp~~~~v~~vl-~~l~~-~L~~g~iIId~st~~  106 (484)
T 4gwg_A           72 IILLVKAGQAVDDFI-EKLVP-LLDTGDIIIDGGNSE  106 (484)
T ss_dssp             EEECSCSSHHHHHHH-HHHGG-GCCTTCEEEECSCCC
T ss_pred             EEEecCChHHHHHHH-HHHHH-hcCCCCEEEEcCCCC
Confidence            999999777777777 44677 899999999999875

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=98.78  E-value=2e-09  Score=94.61  Aligned_cols=95  Identities=26%  Similarity=0.252  Sum_probs=68.5

Q ss_pred             CEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-hCCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-KADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDvvv  230 (269)
                      ++|+|||+|.||..+|+.|...|+  +|++++++..+... ..       ..|..    ..  ...+++++++ ++|+|+
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~-~~-------~~g~~----~~--~~~~~~~~~~~~aDvVi   67 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISK-AV-------DLGII----DE--GTTSIAKVEDFSPDFVM   67 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH-HH-------HTTSC----SE--EESCGGGGGGTCCSEEE
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHH-HH-------HCCCc----cc--ccCCHHHHhcCCCCEEE
Confidence            489999999999999999999998  99999987543110 00       01100    00  1246777888 999999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +++|.. .+..++. +... .+++++++++++.+.
T Consensus        68 lavp~~-~~~~v~~-~l~~-~l~~~~iv~~~~~~~   99 (281)
T 2g5c_A           68 LSSPVR-TFREIAK-KLSY-ILSEDATVTDQGSVK   99 (281)
T ss_dssp             ECSCHH-HHHHHHH-HHHH-HSCTTCEEEECCSCC
T ss_pred             EcCCHH-HHHHHHH-HHHh-hCCCCcEEEECCCCc
Confidence            999954 5555554 3556 799999999998765

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.77  E-value=6.5e-09  Score=91.65  Aligned_cols=165  Identities=15%  Similarity=0.086  Sum_probs=107.2

Q ss_pred             CCCCChhhhcC-----CceEEEEeCCCCCHHHHhcCCCceEEEEccccCCccchhhHhcCCcEEEecCCCCCCCcchHHH
Q 024297           44 VPISDVPDVIA-----NYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAE  118 (269)
Q Consensus        44 ~~~~~~~~~~~-----~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE  118 (269)
                      .+.+++.+.++     +++.+.+ +.+..++++..+..+.-.+....+++.+..    +.|-.    .|+   |....  
T Consensus        49 ~~~~~l~~~i~~l~~~~~~G~nv-tiP~k~~i~~~ld~l~~~A~~~gavnti~~----~~g~~----~g~---nTd~~--  114 (275)
T 2hk9_A           49 INPEELKKAFEGFKALKVKGINV-TVPFKEEIIPLLDYVEDTAKEIGAVNTVKF----ENGKA----YGY---NTDWI--  114 (275)
T ss_dssp             CCGGGHHHHHHHHHHHTCCEEEE-CTTSTTTTGGGCSEECHHHHHHTCCCEEEE----ETTEE----EEE---CCHHH--
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEE-CccCHHHHHHHHHHhhHHHHHhCCcceEEe----eCCEE----Eee---cCCHH--
Confidence            34556555443     3455544 357777788777777777777777777653    33422    222   22221  


Q ss_pred             HHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccch
Q 024297          119 LTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSA  198 (269)
Q Consensus       119 ~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~  198 (269)
                         +++.++.|                 .+.++.+++++|||.|.+|+++++.|...|++|++++|+.++...       
T Consensus       115 ---G~~~~l~~-----------------~~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~-------  167 (275)
T 2hk9_A          115 ---GFLKSLKS-----------------LIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIK-------  167 (275)
T ss_dssp             ---HHHHHHHH-----------------HCTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHH-------
T ss_pred             ---HHHHHHHH-----------------hCCCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHH-------
Confidence               23333322                 134688999999999999999999999999999999987643111       


Q ss_pred             hhhccccccccccccC--CCCCHHHHHhhCCEEEEecCCCcc--ccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          199 LAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQ--TVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       199 ~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~~lp~t~~--t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                                .....+  ...++.++++++|+|++++|....  +...++   ++ .+++++++++++.
T Consensus       168 ----------l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i~---~~-~l~~g~~viDv~~  222 (275)
T 2hk9_A          168 ----------LAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFN---YD-LIKKDHVVVDIIY  222 (275)
T ss_dssp             ----------HTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTTCCCSSC---GG-GCCTTSEEEESSS
T ss_pred             ----------HHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCCCCCCC---HH-HcCCCCEEEEcCC
Confidence                      111111  113677888999999999997642  233454   45 7899999999876

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=98.75  E-value=3.9e-09  Score=94.36  Aligned_cols=93  Identities=19%  Similarity=0.210  Sum_probs=70.2

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~  231 (269)
                      ++|+|||+|.||+.+|+.|...|++|++++++..+...                  ..+.+  ...++.++++++|+|++
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~------------------~~~~g~~~~~~~~~~~~~~DvVi~   92 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDL------------------FIQEGARLGRTPAEVVSTCDITFA   92 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHH------------------HHHTTCEECSCHHHHHHHCSEEEE
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHH------------------HHHcCCEEcCCHHHHHhcCCEEEE
Confidence            68999999999999999999999999999987654211                  00011  23578889999999999


Q ss_pred             ecCCCccccCcCCH--HHHhhhCCCCcEEEEccCCC
Q 024297          232 CLSLNKQTVKLCSS--SLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       232 ~lp~t~~t~~li~~--~~l~~~mk~ga~lIN~~RG~  265 (269)
                      ++|....++.++..  ..+. .++++.++|+++.+.
T Consensus        93 av~~~~~~~~v~~~~~~~~~-~l~~~~~vv~~s~~~  127 (316)
T 2uyy_A           93 CVSDPKAAKDLVLGPSGVLQ-GIRPGKCYVDMSTVD  127 (316)
T ss_dssp             CCSSHHHHHHHHHSTTCGGG-GCCTTCEEEECSCCC
T ss_pred             eCCCHHHHHHHHcCchhHhh-cCCCCCEEEECCCCC
Confidence            99965555554432  1346 789999999998764

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=98.73  E-value=9.2e-09  Score=98.08  Aligned_cols=100  Identities=13%  Similarity=0.097  Sum_probs=74.0

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh---CCEE
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK---ADVV  229 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDvv  229 (269)
                      ..+|||||+|.||+.+|+.|...|++|++|||+..+.......       .   ... .......+++++++.   +|+|
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-------~---~~~-~gi~~~~s~~e~v~~l~~aDvV   78 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLAN-------E---AKG-KSIIGATSIEDFISKLKRPRKV   78 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHT-------T---TTT-SSEECCSSHHHHHHTSCSSCEE
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcc-------c---ccC-CCeEEeCCHHHHHhcCCCCCEE
Confidence            4589999999999999999999999999999987542110000       0   000 001124678898887   9999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      ++++|..+.++.++ .+... .+++|.++|+++-+.
T Consensus        79 il~Vp~~~~v~~vl-~~l~~-~l~~g~iIId~s~~~  112 (497)
T 2p4q_A           79 MLLVKAGAPVDALI-NQIVP-LLEKGDIIIDGGNSH  112 (497)
T ss_dssp             EECCCSSHHHHHHH-HHHGG-GCCTTCEEEECSCCC
T ss_pred             EEEcCChHHHHHHH-HHHHH-hCCCCCEEEECCCCC
Confidence            99999766777777 44666 899999999998764

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.70  E-value=5.3e-09  Score=88.81  Aligned_cols=92  Identities=23%  Similarity=0.193  Sum_probs=66.6

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      ..++|+|||+|.||+.+++.|...|++|++++|+.++.. .                ....-....++.++++++|+|++
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~-~----------------~~~~g~~~~~~~~~~~~~DvVi~   89 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTA-R----------------LFPSAAQVTFQEEAVSSPEVIFV   89 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHH-H----------------HSBTTSEEEEHHHHTTSCSEEEE
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-H----------------HHHcCCceecHHHHHhCCCEEEE
Confidence            457899999999999999999999999999998754311 0                00000011267888999999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      ++|. ...+.++.   +. .+.+++++|+++.|.
T Consensus        90 av~~-~~~~~v~~---l~-~~~~~~~vv~~s~g~  118 (215)
T 2vns_A           90 AVFR-EHYSSLCS---LS-DQLAGKILVDVSNPT  118 (215)
T ss_dssp             CSCG-GGSGGGGG---GH-HHHTTCEEEECCCCC
T ss_pred             CCCh-HHHHHHHH---HH-HhcCCCEEEEeCCCc
Confidence            9994 45556653   44 333899999999885

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=98.69  E-value=3.5e-09  Score=96.40  Aligned_cols=88  Identities=17%  Similarity=0.216  Sum_probs=65.5

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhh----C
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK----A  226 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~----a  226 (269)
                      -++|||||+|.||..+|+.|+..|++|++||++......                  ..+.+  ...++++++++    +
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~------------------a~~~G~~~~~~~~e~~~~a~~~a   69 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKS------------------AVDEGFDVSADLEATLQRAAAED   69 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHH------------------HHHTTCCEESCHHHHHHHHHHTT
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHH------------------HHHcCCeeeCCHHHHHHhcccCC
Confidence            357999999999999999999999999999987643111                  11111  13577777765    6


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|++++|. ..+..++  +.+. .+++++++++++
T Consensus        70 DlVilavP~-~~~~~vl--~~l~-~~~~~~iv~Dv~  101 (341)
T 3ktd_A           70 ALIVLAVPM-TAIDSLL--DAVH-THAPNNGFTDVV  101 (341)
T ss_dssp             CEEEECSCH-HHHHHHH--HHHH-HHCTTCCEEECC
T ss_pred             CEEEEeCCH-HHHHHHH--HHHH-ccCCCCEEEEcC
Confidence            999999994 4566665  2345 459999999986

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=98.68  E-value=3.9e-09  Score=92.80  Aligned_cols=92  Identities=18%  Similarity=0.258  Sum_probs=67.1

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l  233 (269)
                      ++|+|||+|.||+.+++.|.. |++|++++|+..+..... .       .|     .   .... +++++.++|+|++++
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~-~-------~g-----~---~~~~-~~~~~~~~D~vi~~v   63 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQ-E-------EF-----G---SEAV-PLERVAEARVIFTCL   63 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHH-H-------HH-----C---CEEC-CGGGGGGCSEEEECC
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHH-H-------CC-----C---cccC-HHHHHhCCCEEEEeC
Confidence            479999999999999999999 999999998765421100 0       00     0   0112 557788999999999


Q ss_pred             CCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          234 SLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       234 p~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      |.+..+..++ ++... .+++++++|+++.+.
T Consensus        64 ~~~~~~~~v~-~~l~~-~l~~~~~vv~~s~~~   93 (289)
T 2cvz_A           64 PTTREVYEVA-EALYP-YLREGTYWVDATSGE   93 (289)
T ss_dssp             SSHHHHHHHH-HHHTT-TCCTTEEEEECSCCC
T ss_pred             CChHHHHHHH-HHHHh-hCCCCCEEEECCCCC
Confidence            9655566655 33456 789999999998764

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.67  E-value=1e-08  Score=86.77  Aligned_cols=79  Identities=14%  Similarity=0.186  Sum_probs=60.9

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      -++..++|+|||+|.||..+|+.|...|.+|++++|+..                                  .++++|+
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~----------------------------------~~~~aD~   60 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ----------------------------------ATTLGEI   60 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC----------------------------------CSSCCSE
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH----------------------------------HhccCCE
Confidence            457888999999999999999999999999999987531                                  3568999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      |++++| ++.++.++.. ... .++ ++++|+++.|-
T Consensus        61 vi~av~-~~~~~~v~~~-l~~-~~~-~~~vi~~~~g~   93 (209)
T 2raf_A           61 VIMAVP-YPALAALAKQ-YAT-QLK-GKIVVDITNPL   93 (209)
T ss_dssp             EEECSC-HHHHHHHHHH-THH-HHT-TSEEEECCCCB
T ss_pred             EEEcCC-cHHHHHHHHH-HHH-hcC-CCEEEEECCCC
Confidence            999999 6666665543 445 677 99999998864

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.67  E-value=2.7e-09  Score=93.00  Aligned_cols=99  Identities=17%  Similarity=0.217  Sum_probs=71.1

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhh
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK  225 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~  225 (269)
                      .++.+++|+|||+|.||+.+++.|...|++ |.+++|+..+...                 .....+  ...++++++++
T Consensus         6 ~~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~-----------------~~~~~g~~~~~~~~~~~~~   68 (266)
T 3d1l_A            6 RSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARE-----------------LAQKVEAEYTTDLAEVNPY   68 (266)
T ss_dssp             -CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHH-----------------HHHHTTCEEESCGGGSCSC
T ss_pred             cCCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHH-----------------HHHHcCCceeCCHHHHhcC
Confidence            345667999999999999999999999998 9999987543110                 111101  12467777889


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCc
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGV  267 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~v  267 (269)
                      +|+|++++|.. ....++. +... .+++++++|+++.|...
T Consensus        69 ~Dvvi~av~~~-~~~~v~~-~l~~-~~~~~~ivv~~s~~~~~  107 (266)
T 3d1l_A           69 AKLYIVSLKDS-AFAELLQ-GIVE-GKREEALMVHTAGSIPM  107 (266)
T ss_dssp             CSEEEECCCHH-HHHHHHH-HHHT-TCCTTCEEEECCTTSCG
T ss_pred             CCEEEEecCHH-HHHHHHH-HHHh-hcCCCcEEEECCCCCch
Confidence            99999999954 3344442 3445 68899999999988543

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.64  E-value=8.1e-09  Score=91.14  Aligned_cols=91  Identities=23%  Similarity=0.252  Sum_probs=66.9

Q ss_pred             CEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~  231 (269)
                      ++|+|||+ |.||+.+|+.|...|++|++++|+..+... .                 .+.+ ...+..++++++|+|++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~-~-----------------~~~g~~~~~~~~~~~~aDvVi~   73 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDR-L-----------------QGMGIPLTDGDGWIDEADVVVL   73 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHH-H-----------------HHTTCCCCCSSGGGGTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHH-H-----------------HhcCCCcCCHHHHhcCCCEEEE
Confidence            58999999 999999999999999999999987543110 0                 0011 12355677899999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      ++|.. .+..++ ++... .+++++++|+++.|.
T Consensus        74 av~~~-~~~~v~-~~l~~-~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           74 ALPDN-IIEKVA-EDIVP-RVRPGTIVLILDAAA  104 (286)
T ss_dssp             CSCHH-HHHHHH-HHHGG-GSCTTCEEEESCSHH
T ss_pred             cCCch-HHHHHH-HHHHH-hCCCCCEEEECCCCc
Confidence            99954 355555 33445 689999999988763

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=98.63  E-value=1.6e-08  Score=95.88  Aligned_cols=98  Identities=13%  Similarity=0.098  Sum_probs=72.2

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh---CCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK---ADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDvvv  230 (269)
                      ++|||||+|.||+.+|+.|...|++|.+|+|+.++.......     .+ +   ..   .....+++++++.   +|+|+
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----~~-~---~g---i~~~~s~~e~v~~l~~aDvVi   73 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKE-----HQ-D---KN---LVFTKTLEEFVGSLEKPRRIM   73 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH-----TT-T---SC---EEECSSHHHHHHTBCSSCEEE
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHh-----Cc-C---CC---eEEeCCHHHHHhhccCCCEEE
Confidence            589999999999999999999999999999876442110000     00 0   00   0123578888887   99999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +++|....++.++ .+... .+++|.++|+++.|.
T Consensus        74 lavp~~~~v~~vl-~~l~~-~l~~g~iiId~s~~~  106 (474)
T 2iz1_A           74 LMVQAGAATDATI-KSLLP-LLDIGDILIDGGNTH  106 (474)
T ss_dssp             ECCCTTHHHHHHH-HHHGG-GCCTTCEEEECSCCC
T ss_pred             EEccCchHHHHHH-HHHHh-hCCCCCEEEECCCCC
Confidence            9999766777776 34556 899999999998774

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.63  E-value=2.2e-07  Score=82.05  Aligned_cols=78  Identities=23%  Similarity=0.246  Sum_probs=67.0

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||++.|||.|. +|+.+|.+|...|++|++++++.                              .++++.+++|
T Consensus       155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t------------------------------~~L~~~~~~A  204 (285)
T 3p2o_A          155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------------------------KDLSLYTRQA  204 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------------------------SCHHHHHTTC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHHhhcC
Confidence            4679999999999998 69999999999999999987531                              4688999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |+||.+++.    .++++.+    .+|+|+++|++|.
T Consensus       205 DIVI~Avg~----p~~I~~~----~vk~GavVIDVgi  233 (285)
T 3p2o_A          205 DLIIVAAGC----VNLLRSD----MVKEGVIVVDVGI  233 (285)
T ss_dssp             SEEEECSSC----TTCBCGG----GSCTTEEEEECCC
T ss_pred             CEEEECCCC----CCcCCHH----HcCCCeEEEEecc
Confidence            999999973    3578774    5789999999983

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.61  E-value=1.7e-08  Score=87.23  Aligned_cols=91  Identities=18%  Similarity=0.284  Sum_probs=66.2

Q ss_pred             CEEEEEecCchHHHHHHHhccCCC----EEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGV----KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  227 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~----~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  227 (269)
                      ++|+|||+|+||+.+++.|...|+    +|++|||+.++..                 ......+  ...+..++++++|
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~-----------------~~~~~~g~~~~~~~~e~~~~aD   65 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLK-----------------NASEKYGLTTTTDNNEVAKNAD   65 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHH-----------------HHHHHHCCEECSCHHHHHHHCS
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHH-----------------HHHHHhCCEEeCChHHHHHhCC
Confidence            589999999999999999999998    9999999764411                 1111111  2367889999999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +|++++| ......++. +... .+++++++|.+.-|
T Consensus        66 vVilav~-~~~~~~v~~-~l~~-~l~~~~~vvs~~~g   99 (247)
T 3gt0_A           66 ILILSIK-PDLYASIIN-EIKE-IIKNDAIIVTIAAG   99 (247)
T ss_dssp             EEEECSC-TTTHHHHC----CC-SSCTTCEEEECSCC
T ss_pred             EEEEEeC-HHHHHHHHH-HHHh-hcCCCCEEEEecCC
Confidence            9999997 334455553 2444 68899999977654

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=98.61  E-value=1.3e-08  Score=89.10  Aligned_cols=93  Identities=19%  Similarity=0.300  Sum_probs=65.6

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l  233 (269)
                      ++|+|||+|.||+.+++.|...|++|++++++..+... ..       ..|..    ..  ...+++++ +++|+|++++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~-~~-------~~g~~----~~--~~~~~~~~-~~~D~vi~av   65 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEK-AV-------ERQLV----DE--AGQDLSLL-QTAKIIFLCT   65 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH-HH-------HTTSC----SE--EESCGGGG-TTCSEEEECS
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HH-------hCCCC----cc--ccCCHHHh-CCCCEEEEEC
Confidence            37999999999999999999999999999987543111 00       00100    00  12466777 8999999999


Q ss_pred             CCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          234 SLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       234 p~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      |. ..+..++. +... .+++++++|+++..
T Consensus        66 ~~-~~~~~~~~-~l~~-~~~~~~~vv~~~~~   93 (279)
T 2f1k_A           66 PI-QLILPTLE-KLIP-HLSPTAIVTDVASV   93 (279)
T ss_dssp             CH-HHHHHHHH-HHGG-GSCTTCEEEECCSC
T ss_pred             CH-HHHHHHHH-HHHh-hCCCCCEEEECCCC
Confidence            93 34555553 3445 78999999999654

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=98.61  E-value=2.6e-08  Score=94.56  Aligned_cols=99  Identities=12%  Similarity=0.160  Sum_probs=72.1

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh---hCCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS---KADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDvvv  230 (269)
                      ++|||||+|.||+.+|..|...|++|.+|+|+.++........    .+ |      .......++++++.   ++|+|+
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~----~~-g------~gi~~~~~~~e~v~~l~~aDvVi   71 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANE----AK-G------TKVLGAHSLEEMVSKLKKPRRII   71 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTT----TT-T------SSCEECSSHHHHHHHBCSSCEEE
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcc----cc-C------CCeEEeCCHHHHHhhccCCCEEE
Confidence            5799999999999999999999999999999765421100000    00 0      00012357888875   899999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +++|..+.++.++. +... .+++|.++|+++.|.
T Consensus        72 laVp~~~~v~~vl~-~l~~-~l~~g~iII~~s~~~  104 (482)
T 2pgd_A           72 LLVKAGQAVDNFIE-KLVP-LLDIGDIIIDGGNSE  104 (482)
T ss_dssp             ECSCTTHHHHHHHH-HHHH-HCCTTCEEEECSCCC
T ss_pred             EeCCChHHHHHHHH-HHHh-hcCCCCEEEECCCCC
Confidence            99997667777764 4566 899999999998775

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.60  E-value=2.7e-07  Score=81.51  Aligned_cols=78  Identities=15%  Similarity=0.192  Sum_probs=66.6

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.|+++.|||.|. +|+.+|++|...|++|+.++++.                              .++++.+++|
T Consensus       156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------------------------~~L~~~~~~A  205 (285)
T 3l07_A          156 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------------------------TDLKSHTTKA  205 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------------------------SSHHHHHTTC
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHhcccC
Confidence            4679999999999998 69999999999999999987531                              4688999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |+||.+++.    .++++.+    .+|+|+++|++|.
T Consensus       206 DIVI~Avg~----p~~I~~~----~vk~GavVIDvgi  234 (285)
T 3l07_A          206 DILIVAVGK----PNFITAD----MVKEGAVVIDVGI  234 (285)
T ss_dssp             SEEEECCCC----TTCBCGG----GSCTTCEEEECCC
T ss_pred             CEEEECCCC----CCCCCHH----HcCCCcEEEEecc
Confidence            999999973    3567774    5789999999983

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.60  E-value=6e-09  Score=98.26  Aligned_cols=140  Identities=14%  Similarity=0.017  Sum_probs=84.5

Q ss_pred             CcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCcccc-------ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcC
Q 024297          112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGET-------LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (269)
Q Consensus       112 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~-------l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~  184 (269)
                      |-..|.|.+..+++..-|.         .++|..+.+..       ..=++|+|||.|.||..+|+.+...|++|+++|+
T Consensus        15 ~~~~~~~~~~~~~~~a~~~---------~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~   85 (460)
T 3k6j_A           15 NLYFQGSEVRSYLMEAHSL---------AGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVR   85 (460)
T ss_dssp             GGGGCBCHHHHHHHHTTCC---------TTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             chhhhhHHHHHHHHhHHHh---------hccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEC
Confidence            4456677777777773332         35687663321       1227899999999999999999999999999999


Q ss_pred             CCCCccccccccchhhhccccccc-----cccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEE
Q 024297          185 SWASHSQVSCQSSALAVKNGIIDD-----LVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVV  259 (269)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lI  259 (269)
                      +.++...............|.+..     .........+++ .+++||+|+.++|.+.+.+.-+-++..+ .++++++|+
T Consensus        86 ~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~-~~~~~aIla  163 (460)
T 3k6j_A           86 NEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLEN-ICKSTCIFG  163 (460)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHT-TSCTTCEEE
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHh-hCCCCCEEE
Confidence            765210000000000111111100     000011124564 6899999999999766554433344555 899999996


Q ss_pred             -Ecc
Q 024297          260 -FMF  262 (269)
Q Consensus       260 -N~~  262 (269)
                       |++
T Consensus       164 snTS  167 (460)
T 3k6j_A          164 TNTS  167 (460)
T ss_dssp             ECCS
T ss_pred             ecCC
Confidence             444

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.60  E-value=3.1e-07  Score=81.19  Aligned_cols=79  Identities=14%  Similarity=0.183  Sum_probs=67.2

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.|+++.|||.|+ +|+.+|++|...|++|+.++++                              ..++.+.+++|
T Consensus       154 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~------------------------------t~~L~~~~~~A  203 (288)
T 1b0a_A          154 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF------------------------------TKNLRHHVENA  203 (288)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS------------------------------CSCHHHHHHHC
T ss_pred             CCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCC------------------------------chhHHHHhccC
Confidence            4679999999999997 5999999999999999998742                              14788999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      |+|+.+++.    .++++++    .+|+|+++|++|.-
T Consensus       204 DIVI~Avg~----p~lI~~~----~vk~GavVIDVgi~  233 (288)
T 1b0a_A          204 DLLIVAVGK----PGFIPGD----WIKEGAIVIDVGIN  233 (288)
T ss_dssp             SEEEECSCC----TTCBCTT----TSCTTCEEEECCCE
T ss_pred             CEEEECCCC----cCcCCHH----HcCCCcEEEEccCC
Confidence            999999982    2478874    46899999999953

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.60  E-value=6.8e-08  Score=86.86  Aligned_cols=98  Identities=15%  Similarity=0.131  Sum_probs=71.2

Q ss_pred             cccccCCEEEEEecCch-HHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCC------C--CC
Q 024297          148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC------H--ED  218 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~  218 (269)
                      +.++.|+++.|||.|.| |+.+|+.|...|++|+.++|+..+.....             .........      .  .+
T Consensus       172 g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra-------------~~la~~~~~~t~~~~t~~~~  238 (320)
T 1edz_A          172 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRG-------------ESLKLNKHHVEDLGEYSEDL  238 (320)
T ss_dssp             TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESC-------------CCSSCCCCEEEEEEECCHHH
T ss_pred             CCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHH-------------HHHhhhcccccccccccHhH
Confidence            56899999999999975 99999999999999999998733211000             001111111      1  47


Q ss_pred             HHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          219 IFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       219 l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +.+.+++||+||.+++..   ..+|+.++    +|+|+++|++|-..
T Consensus       239 L~e~l~~ADIVIsAtg~p---~~vI~~e~----vk~GavVIDVgi~r  278 (320)
T 1edz_A          239 LKKCSLDSDVVITGVPSE---NYKFPTEY----IKEGAVCINFACTK  278 (320)
T ss_dssp             HHHHHHHCSEEEECCCCT---TCCBCTTT----SCTTEEEEECSSSC
T ss_pred             HHHHhccCCEEEECCCCC---cceeCHHH----cCCCeEEEEcCCCc
Confidence            899999999999998732   23477754    68899999998654

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=98.59  E-value=2e-08  Score=87.30  Aligned_cols=90  Identities=19%  Similarity=0.171  Sum_probs=63.5

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEEEe
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~~  232 (269)
                      ++|+|||+|.||+.+|+.|...|++|+++++...+..  .             +.. .+.+ . .+++++++++|+|+++
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~--~-------------~~~-~~~g~~-~~~~~~~~~aDvvi~~   63 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPST--I-------------ERA-RTVGVT-ETSEEDVYSCPVVISA   63 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHH--H-------------HHH-HHHTCE-ECCHHHHHTSSEEEEC
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHH--H-------------HHH-HHCCCc-CCHHHHHhcCCEEEEE
Confidence            3799999999999999999999999999887321100  0             000 0001 1 4567889999999999


Q ss_pred             cCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          233 LSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       233 lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +|.......+  .+... .+++  ++|+++.+.
T Consensus        64 v~~~~~~~~~--~~~~~-~~~~--~vi~~s~~~   91 (264)
T 1i36_A           64 VTPGVALGAA--RRAGR-HVRG--IYVDINNIS   91 (264)
T ss_dssp             SCGGGHHHHH--HHHHT-TCCS--EEEECSCCC
T ss_pred             CCCHHHHHHH--HHHHH-hcCc--EEEEccCCC
Confidence            9966544443  44556 6776  999997654

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.59  E-value=3.3e-07  Score=81.44  Aligned_cols=79  Identities=13%  Similarity=0.164  Sum_probs=67.6

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.|+++.|||.|+ +|+.+|++|...|++|+.++++                              ..+|.+.+++|
T Consensus       160 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~------------------------------t~~L~~~~~~A  209 (301)
T 1a4i_A          160 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK------------------------------TAHLDEEVNKG  209 (301)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT------------------------------CSSHHHHHTTC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC------------------------------cccHHHHhccC
Confidence            4679999999999996 6999999999999999998742                              24788999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      |+||.+++.    .++|+.++    +|+|+++|++|.-
T Consensus       210 DIVI~Avg~----p~~I~~~~----vk~GavVIDVgi~  239 (301)
T 1a4i_A          210 DILVVATGQ----PEMVKGEW----IKPGAIVIDCGIN  239 (301)
T ss_dssp             SEEEECCCC----TTCBCGGG----SCTTCEEEECCCB
T ss_pred             CEEEECCCC----cccCCHHH----cCCCcEEEEccCC
Confidence            999999984    24788754    6899999999964

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.59  E-value=3.3e-07  Score=80.92  Aligned_cols=78  Identities=24%  Similarity=0.282  Sum_probs=66.8

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||++.|||.|. +|+.+|.+|...|++|+.+.+.                              ..+|++.+++|
T Consensus       156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~------------------------------T~~L~~~~~~A  205 (286)
T 4a5o_A          156 GADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRF------------------------------TRDLADHVSRA  205 (286)
T ss_dssp             TCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTT------------------------------CSCHHHHHHTC
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC------------------------------CcCHHHHhccC
Confidence            4679999999999987 7999999999999999998642                              14688999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |+||.+++.    .++++.+    .+|+|+++|++|.
T Consensus       206 DIVI~Avg~----p~~I~~~----~vk~GavVIDvgi  234 (286)
T 4a5o_A          206 DLVVVAAGK----PGLVKGE----WIKEGAIVIDVGI  234 (286)
T ss_dssp             SEEEECCCC----TTCBCGG----GSCTTCEEEECCS
T ss_pred             CEEEECCCC----CCCCCHH----HcCCCeEEEEecc
Confidence            999999973    3578774    5689999999984

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=98.58  E-value=1.1e-08  Score=90.15  Aligned_cols=95  Identities=27%  Similarity=0.361  Sum_probs=65.4

Q ss_pred             CCEEEEEecCchHHHHHHHhccC--CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          153 GKTVFILGFGNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      -++|+|||+|.||+.+|+.|...  |.+|+++|++...... ..       ..|..    ..  ...+++++++++|+|+
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~-~~-------~~g~~----~~--~~~~~~~~~~~aDvVi   71 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDI-AL-------ERGIV----DE--ATADFKVFAALADVII   71 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHH-HH-------HTTSC----SE--EESCTTTTGGGCSEEE
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHH-HH-------HcCCc----cc--ccCCHHHhhcCCCEEE
Confidence            36899999999999999999865  7899999987543110 00       00100    00  1245667789999999


Q ss_pred             EecCCCccccCcCCHHHHhhh-CCCCcEEEEccCC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKS-MFFATYVVFMFQG  264 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~-mk~ga~lIN~~RG  264 (269)
                      +++|.. ....++.. ... . +++++++++++..
T Consensus        72 lavp~~-~~~~v~~~-l~~-~~l~~~~ivi~~~~~  103 (290)
T 3b1f_A           72 LAVPIK-KTIDFIKI-LAD-LDLKEDVIITDAGST  103 (290)
T ss_dssp             ECSCHH-HHHHHHHH-HHT-SCCCTTCEEECCCSC
T ss_pred             EcCCHH-HHHHHHHH-HHh-cCCCCCCEEEECCCC
Confidence            999944 33555433 445 6 8999999998764

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.57  E-value=2.2e-07  Score=81.60  Aligned_cols=75  Identities=15%  Similarity=0.095  Sum_probs=65.0

Q ss_pred             ccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          151 LLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       151 l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      +.|+++.|||.|. +|+.+|++|...|++|++++++                              ..++++.+++||+|
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~------------------------------t~~L~~~~~~ADIV  197 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK------------------------------TKDIGSMTRSSKIV  197 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT------------------------------CSCHHHHHHHSSEE
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC------------------------------cccHHHhhccCCEE
Confidence            9999999999996 7999999999999999999752                              14788999999999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +.+++.    .++++++    .+|+|+++|++|.
T Consensus       198 I~Avg~----p~~I~~~----~vk~GavVIDvgi  223 (276)
T 3ngx_A          198 VVAVGR----PGFLNRE----MVTPGSVVIDVGI  223 (276)
T ss_dssp             EECSSC----TTCBCGG----GCCTTCEEEECCC
T ss_pred             EECCCC----CccccHh----hccCCcEEEEecc
Confidence            999984    3478774    5689999999984

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.57  E-value=8e-08  Score=83.29  Aligned_cols=88  Identities=14%  Similarity=0.251  Sum_probs=65.9

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~  231 (269)
                      ++|+|||+|.||+.+++.|...|.+|.+++++..+...                 .....+  ...+++++++++|+|++
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~-----------------~~~~~g~~~~~~~~~~~~~~D~Vi~   66 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKE-----------------IAEQLALPYAMSHQDLIDQVDLVIL   66 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHH-----------------HHHHHTCCBCSSHHHHHHTCSEEEE
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHH-----------------HHHHcCCEeeCCHHHHHhcCCEEEE
Confidence            58999999999999999999999999999987543110                 111111  23578899999999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      ++| +...     .+.+. .+++|.++|++..|-
T Consensus        67 ~v~-~~~~-----~~v~~-~l~~~~~vv~~~~~~   93 (259)
T 2ahr_A           67 GIK-PQLF-----ETVLK-PLHFKQPIISMAAGI   93 (259)
T ss_dssp             CSC-GGGH-----HHHHT-TSCCCSCEEECCTTC
T ss_pred             EeC-cHhH-----HHHHH-HhccCCEEEEeCCCC
Confidence            998 3332     44566 678899999987653

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.57  E-value=3.1e-07  Score=80.85  Aligned_cols=78  Identities=18%  Similarity=0.238  Sum_probs=66.4

Q ss_pred             cccccCCEEEEEecCch-HHHHHHHhccC--CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh
Q 024297          148 GETLLGKTVFILGFGNI-GVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS  224 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~i-G~~~a~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  224 (269)
                      +.++.|+++.|||.|++ |+.+|++|...  |++|+.++++.                              .++.+.++
T Consensus       153 ~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t------------------------------~~L~~~~~  202 (281)
T 2c2x_A          153 DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT------------------------------RDLPALTR  202 (281)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC------------------------------SCHHHHHT
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch------------------------------hHHHHHHh
Confidence            46799999999999985 99999999999  89999987432                              47889999


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +||+|+.+++.    .+++.+++    +|+|+++|++|.
T Consensus       203 ~ADIVI~Avg~----p~~I~~~~----vk~GavVIDVgi  233 (281)
T 2c2x_A          203 QADIVVAAVGV----AHLLTADM----VRPGAAVIDVGV  233 (281)
T ss_dssp             TCSEEEECSCC----TTCBCGGG----SCTTCEEEECCE
T ss_pred             hCCEEEECCCC----CcccCHHH----cCCCcEEEEccC
Confidence            99999999972    24688854    678999999984

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.57  E-value=3.4e-07  Score=81.35  Aligned_cols=78  Identities=18%  Similarity=0.192  Sum_probs=66.2

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHH--HHHh
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF--EFAS  224 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--ell~  224 (269)
                      +.++.|+++.|||.|. +|+.+|+.|...|++|+++++..                              .+++  +.++
T Consensus       160 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T------------------------------~~l~l~~~~~  209 (300)
T 4a26_A          160 GIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT------------------------------STEDMIDYLR  209 (300)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS------------------------------CHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC------------------------------CCchhhhhhc
Confidence            4679999999999998 79999999999999999998632                              2455  8999


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +||+||.++|.    .++++++    .+|+|+++|++|-
T Consensus       210 ~ADIVI~Avg~----p~~I~~~----~vk~GavVIDvgi  240 (300)
T 4a26_A          210 TADIVIAAMGQ----PGYVKGE----WIKEGAAVVDVGT  240 (300)
T ss_dssp             TCSEEEECSCC----TTCBCGG----GSCTTCEEEECCC
T ss_pred             cCCEEEECCCC----CCCCcHH----hcCCCcEEEEEec
Confidence            99999999983    3577774    5789999999984

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=98.56  E-value=3.2e-08  Score=93.87  Aligned_cols=102  Identities=17%  Similarity=0.189  Sum_probs=72.0

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh---CCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK---ADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDvvv  230 (269)
                      ++|||||+|.||+.+|+.|...|++|.+++|+..+......       ..|. ...........+++++++.   +|+|+
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~-------~~g~-~~~~~~i~~~~~~~e~v~~l~~aDvVi   73 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMK-------ANAS-APFAGNLKAFETMEAFAASLKKPRKAL   73 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHH-------HTTT-STTGGGEEECSCHHHHHHHBCSSCEEE
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-------hcCC-CCCCCCeEEECCHHHHHhcccCCCEEE
Confidence            47999999999999999999999999999987544211000       0000 0000001123578888875   99999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +++|....++..+ ++... .+++|.++|+++.|.
T Consensus        74 laVp~~~~v~~vl-~~l~~-~l~~g~iIId~sng~  106 (478)
T 1pgj_A           74 ILVQAGAATDSTI-EQLKK-VFEKGDILVDTGNAH  106 (478)
T ss_dssp             ECCCCSHHHHHHH-HHHHH-HCCTTCEEEECCCCC
T ss_pred             EecCChHHHHHHH-HHHHh-hCCCCCEEEECCCCC
Confidence            9999766677776 34566 899999999998775

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.53  E-value=1.7e-08  Score=89.89  Aligned_cols=99  Identities=12%  Similarity=0.088  Sum_probs=65.6

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      -..|+|||||+|.||..+|+.+. .|++|++||+++.........     +.    +..........++++ +++||+|+
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~-----l~----~~~~~~i~~~~~~~~-~~~aDlVi   78 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQ-----IP----EELLSKIEFTTTLEK-VKDCDIVM   78 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHH-----SC----GGGGGGEEEESSCTT-GGGCSEEE
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHH-----HH----HHHhCCeEEeCCHHH-HcCCCEEE
Confidence            46789999999999999999999 999999999976542111100     00    000000101234555 89999999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEE-EccC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVV-FMFQ  263 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lI-N~~R  263 (269)
                      .++|.+.+.+..+-. .+. .+ ++++++ |++-
T Consensus        79 eavpe~~~vk~~l~~-~l~-~~-~~~IlasntSt  109 (293)
T 1zej_A           79 EAVFEDLNTKVEVLR-EVE-RL-TNAPLCSNTSV  109 (293)
T ss_dssp             ECCCSCHHHHHHHHH-HHH-TT-CCSCEEECCSS
T ss_pred             EcCcCCHHHHHHHHH-HHh-cC-CCCEEEEECCC
Confidence            999988765554433 356 66 899885 7753

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.51  E-value=1.3e-07  Score=84.80  Aligned_cols=89  Identities=13%  Similarity=0.077  Sum_probs=67.4

Q ss_pred             ccCCEEEEEecCchHHHHHHHhcc-CCC-EEEEEcCCCCCccccccccchhhhccccccccccc----cCCCCCHHHHHh
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE----KGCHEDIFEFAS  224 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~ell~  224 (269)
                      ...++|||||+|.+|+.+++.+.. +|. +|.+|||+..+...                 ....    .....+++++++
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~-----------------l~~~~~~~~~~~~~~~e~v~  195 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEK-----------------FADTVQGEVRVCSSVQEAVA  195 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHH-----------------HHHHSSSCCEECSSHHHHHT
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHH-----------------HHHHhhCCeEEeCCHHHHHh
Confidence            356799999999999999999875 487 89999987654211                 1111    112368999999


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ++|+|++++|.   +..++..   . .+++|+.+++++.
T Consensus       196 ~aDiVi~atp~---~~~v~~~---~-~l~~g~~vi~~g~  227 (312)
T 2i99_A          196 GADVIITVTLA---TEPILFG---E-WVKPGAHINAVGA  227 (312)
T ss_dssp             TCSEEEECCCC---SSCCBCG---G-GSCTTCEEEECCC
T ss_pred             cCCEEEEEeCC---CCcccCH---H-HcCCCcEEEeCCC
Confidence            99999999884   4567765   5 7899999999864

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.48  E-value=5.5e-08  Score=85.92  Aligned_cols=93  Identities=24%  Similarity=0.244  Sum_probs=67.7

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCC---EEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCC
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGV---KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  227 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~---~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  227 (269)
                      .++|||||+|+||+.+++.|...|+   +|+++||+..+..                 .....++  ...+..++++++|
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~-----------------~l~~~~gi~~~~~~~~~~~~aD   65 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLD-----------------FFKEKCGVHTTQDNRQGALNAD   65 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHH-----------------HHHHTTCCEEESCHHHHHSSCS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHH-----------------HHHHHcCCEEeCChHHHHhcCC
Confidence            4789999999999999999999998   8999999765421                 1111112  2357889999999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhh-CCCCcEEEEccCCC
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKS-MFFATYVVFMFQGH  265 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~-mk~ga~lIN~~RG~  265 (269)
                      +|++++|. .....++. +.-. . +++++++|++.-|-
T Consensus        66 vVilav~p-~~~~~vl~-~l~~-~~l~~~~iiiS~~agi  101 (280)
T 3tri_A           66 VVVLAVKP-HQIKMVCE-ELKD-ILSETKILVISLAVGV  101 (280)
T ss_dssp             EEEECSCG-GGHHHHHH-HHHH-HHHTTTCEEEECCTTC
T ss_pred             eEEEEeCH-HHHHHHHH-HHHh-hccCCCeEEEEecCCC
Confidence            99999973 34444442 2333 5 78888999887664

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.47  E-value=7.9e-08  Score=86.43  Aligned_cols=94  Identities=18%  Similarity=0.175  Sum_probs=67.5

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCC----CEEEEEcCCCCC-ccccccccchhhhccccccccccccC--CCCCHHHHH
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWAS-HSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA  223 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell  223 (269)
                      ...++|+|||+|.||..+|+.|...|    .+|++++|+... .....                 .+.+  ...+..+++
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l-----------------~~~G~~~~~~~~e~~   82 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSAL-----------------RKMGVKLTPHNKETV   82 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHH-----------------HHHTCEEESCHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHH-----------------HHcCCEEeCChHHHh
Confidence            44568999999999999999999888    789999997641 11110                 0111  124678899


Q ss_pred             hhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          224 SKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       224 ~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +++|+|++++| ......++. +... .+++++++|+++=|
T Consensus        83 ~~aDvVilav~-~~~~~~vl~-~l~~-~l~~~~ivvs~s~g  120 (322)
T 2izz_A           83 QHSDVLFLAVK-PHIIPFILD-EIGA-DIEDRHIVVSCAAG  120 (322)
T ss_dssp             HHCSEEEECSC-GGGHHHHHH-HHGG-GCCTTCEEEECCTT
T ss_pred             ccCCEEEEEeC-HHHHHHHHH-HHHh-hcCCCCEEEEeCCC
Confidence            99999999999 455555543 3445 68889999998655

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.46  E-value=1.3e-07  Score=83.57  Aligned_cols=96  Identities=14%  Similarity=0.104  Sum_probs=68.6

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhh
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK  225 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~  225 (269)
                      .++.|+++.|+|.|.+|++++..|...|+ +|++++|+.++...                 +.....  ..+++.+++++
T Consensus       113 ~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~-----------------la~~~~~~~~~~~~~~~~~  175 (277)
T 3don_A          113 EGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNN-----------------WSLNINKINLSHAESHLDE  175 (277)
T ss_dssp             TTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTT-----------------CCSCCEEECHHHHHHTGGG
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH-----------------HHHhcccccHhhHHHHhcC
Confidence            46889999999999999999999999999 89999998755211                 111100  23456677889


Q ss_pred             CCEEEEecCCC--ccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          226 ADVVVCCLSLN--KQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       226 aDvvv~~lp~t--~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +|+||++.|..  +.....++   .+ .++++++++++.-.+
T Consensus       176 aDiVInaTp~Gm~~~~~~~l~---~~-~l~~~~~V~D~vY~P  213 (277)
T 3don_A          176 FDIIINTTPAGMNGNTDSVIS---LN-RLASHTLVSDIVYNP  213 (277)
T ss_dssp             CSEEEECCC-------CCSSC---CT-TCCSSCEEEESCCSS
T ss_pred             CCEEEECccCCCCCCCcCCCC---HH-HcCCCCEEEEecCCC
Confidence            99999999864  23222233   35 789999999987554

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.42  E-value=7.4e-08  Score=88.08  Aligned_cols=109  Identities=12%  Similarity=0.051  Sum_probs=70.9

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      .++|+|||.|.||..+|..|...|.+|.+|+|++..............+..|.  ..........++.+.++.+|+|+++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~--~l~~~i~~t~d~~ea~~~aDvVila  106 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNY--PFPETLKAYCDLKASLEGVTDILIV  106 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTC--CCCTTEEEESCHHHHHTTCCEEEEC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCC--ccCCCeEEECCHHHHHhcCCEEEEC
Confidence            46899999999999999999999999999998654311100000000011110  0000001125788999999999999


Q ss_pred             cCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297          233 LSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       233 lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      +|. ...+.++ ++... .+++++++|++.-|-.
T Consensus       107 Vp~-~~~~~vl-~~i~~-~l~~~~ivvs~~kGi~  137 (356)
T 3k96_A          107 VPS-FAFHEVI-TRMKP-LIDAKTRIAWGTKGLA  137 (356)
T ss_dssp             CCH-HHHHHHH-HHHGG-GCCTTCEEEECCCSCB
T ss_pred             CCH-HHHHHHH-HHHHH-hcCCCCEEEEEeCCCC
Confidence            994 3455554 22445 7889999999987743

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.39  E-value=3.9e-07  Score=85.70  Aligned_cols=104  Identities=14%  Similarity=0.217  Sum_probs=68.4

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccccc------ccCCCCCHHHHHhhCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD------EKGCHEDIFEFASKAD  227 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~ell~~aD  227 (269)
                      -+++|||+|.||..+|..|...|++|++||++..+-...... ....+-.|. ++...      ......++.+.+++||
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g-~~~~~epgl-~~~~~~~~~~g~l~~ttd~~ea~~~aD   86 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQN-VMPIYEPGL-DALVASNVKAGRLSFTTDLAEGVKDAD   86 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTT-CCSSCCTTH-HHHHHHHHHTTCEEEESCHHHHHTTCS
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcC-CCCccCCCH-HHHHHhhcccCCEEEECCHHHHHhcCC
Confidence            489999999999999999999999999999987652211100 000000110 00000      0112368889999999


Q ss_pred             EEEEecCCCccc-----------cCcCCHHHHhhhCCCCcEEEEcc
Q 024297          228 VVVCCLSLNKQT-----------VKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       228 vvv~~lp~t~~t-----------~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +|++++| ||..           +..+ +.... .+++|+++|+.+
T Consensus        87 vvii~Vp-tp~~~~~~~~Dl~~v~~v~-~~i~~-~l~~g~iVV~~S  129 (446)
T 4a7p_A           87 AVFIAVG-TPSRRGDGHADLSYVFAAA-REIAE-NLTKPSVIVTKS  129 (446)
T ss_dssp             EEEECCC-CCBCTTTCCBCTHHHHHHH-HHHHH-SCCSCCEEEECS
T ss_pred             EEEEEcC-CCCccccCCccHHHHHHHH-HHHHH-hcCCCCEEEEeC
Confidence            9999999 4431           1222 33455 899999999986

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.38  E-value=1e-07  Score=84.68  Aligned_cols=110  Identities=15%  Similarity=0.096  Sum_probs=66.6

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcccccc---ccchhhhccccccc----------cccccCCCCCHH
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC---QSSALAVKNGIIDD----------LVDEKGCHEDIF  220 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~----------~~~~~~~~~~l~  220 (269)
                      ++|+|||.|.||..+|..|...|++|+++|++.........   ...+.....|.+..          .........+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~   95 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   95 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence            68999999999999999999999999999987543111000   00000000111000          000011135788


Q ss_pred             HHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          221 EFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       221 ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +.+++||+|++++|.+.+...-+-++... .++++++++...-|
T Consensus        96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~-~~~~~~iv~s~ts~  138 (302)
T 1f0y_A           96 SVVHSTDLVVEAIVENLKVKNELFKRLDK-FAAEHTIFASNTSS  138 (302)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTT-TSCTTCEEEECCSS
T ss_pred             HhhcCCCEEEEcCcCcHHHHHHHHHHHHh-hCCCCeEEEECCCC
Confidence            88999999999998654332222233334 68889998854433

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.37  E-value=2.3e-07  Score=87.34  Aligned_cols=105  Identities=12%  Similarity=0.210  Sum_probs=67.4

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccc------cccCCCCCHHHHHhhCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV------DEKGCHEDIFEFASKAD  227 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~ell~~aD  227 (269)
                      ++|+|||+|.||..+|..|...|.+|+++|++..+-...... ....+..|. .+..      .......++++++++||
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g-~~~i~e~gl-~~~l~~~~~~~~l~~t~d~~ea~~~aD   80 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSG-TIPIYEPGL-EKMIARNVKAGRLRFGTEIEQAVPEAD   80 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT-CSCCCSTTH-HHHHHHHHHTTSEEEESCHHHHGGGCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcC-CCcccCCCH-HHHHHhhcccCcEEEECCHHHHHhcCC
Confidence            589999999999999999999999999999976432110000 000000000 0000      00112367889999999


Q ss_pred             EEEEecCCCcc---------ccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          228 VVVCCLSLNKQ---------TVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       228 vvv~~lp~t~~---------t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +|++++|...+         .+..+ ++... .+++++++|+.+
T Consensus        81 vViiaVptp~~~~~~~dl~~v~~v~-~~i~~-~l~~g~iVV~~S  122 (450)
T 3gg2_A           81 IIFIAVGTPAGEDGSADMSYVLDAA-RSIGR-AMSRYILIVTKS  122 (450)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHH-HHHHH-HCCSCEEEEECS
T ss_pred             EEEEEcCCCcccCCCcChHHHHHHH-HHHHh-hCCCCCEEEEee
Confidence            99999994432         22222 33455 799999999987

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.37  E-value=3.9e-07  Score=86.11  Aligned_cols=109  Identities=11%  Similarity=0.115  Sum_probs=68.1

Q ss_pred             CEEEEEecCchHHHHHHHhccC--CCEEEEEcCCCCCccccccccchhhhcccccccccc-----ccCCCCCHHHHHhhC
Q 024297          154 KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-----EKGCHEDIFEFASKA  226 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~ell~~a  226 (269)
                      ++|+|||+|.||..+|..|...  |++|+++|++..+........... +..+. .+...     ......++.+.+++|
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i-~e~~l-~~~~~~~~~~~~~~t~~~~e~~~~a   83 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPI-YEPGL-KEVVESCRGKNLFFSTNIDDAIKEA   83 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSS-CCTTH-HHHHHHHBTTTEEEESCHHHHHHHC
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCc-CCCCH-HHHHHHhhcCCEEEECCHHHHHhcC
Confidence            5899999999999999999987  899999998764321100000000 00000 00110     011235788899999


Q ss_pred             CEEEEecCCCccccCcC-----------C--HHHHhhhCCCCcEEEEccCCC
Q 024297          227 DVVVCCLSLNKQTVKLC-----------S--SSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li-----------~--~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      |+|++++|...+..+.+           +  ++... .+++++++|+.+..+
T Consensus        84 DvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~-~l~~g~iVV~~STv~  134 (467)
T 2q3e_A           84 DLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQ-NSNGYKIVTEKSTVP  134 (467)
T ss_dssp             SEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHH-TCCSEEEEEECSCCC
T ss_pred             CEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHh-hCCCCCEEEECCcCC
Confidence            99999999444333321           1  22445 789999999987644

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.34  E-value=2.8e-07  Score=83.23  Aligned_cols=103  Identities=17%  Similarity=0.166  Sum_probs=65.9

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccccccc-CCCCCHHHHHhhCCEEEEe
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDvvv~~  232 (269)
                      ++|+|||+|.||..+|..|...|++|++++|+.......... -...+...... ..... ....+++++++.+|+|+++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~vi~~   82 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDR-GAIIAEGPGLA-GTAHPDLLTSDIGLAVKDADVILIV   82 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH-TSEEEESSSCC-EEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhc-CCeEEeccccc-cccccceecCCHHHHHhcCCEEEEe
Confidence            589999999999999999999999999999875431110000 00000000000 00000 0135788889999999999


Q ss_pred             cCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          233 LSLNKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       233 lp~t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      +|.. .+..++ ++... .+++++++|+.
T Consensus        83 v~~~-~~~~~~-~~l~~-~l~~~~~vv~~  108 (359)
T 1bg6_A           83 VPAI-HHASIA-ANIAS-YISEGQLIILN  108 (359)
T ss_dssp             SCGG-GHHHHH-HHHGG-GCCTTCEEEES
T ss_pred             CCch-HHHHHH-HHHHH-hCCCCCEEEEc
Confidence            9954 344444 33445 68999999987

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.33  E-value=6.1e-07  Score=78.40  Aligned_cols=99  Identities=18%  Similarity=0.216  Sum_probs=65.0

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l  233 (269)
                      ++|+|||.|.||..+|..|...|.+|++++|+..+... ....    ..+|.  ...... ...+ .+.++.+|+|++++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~-l~~~----~~~~~--~~~~~~-~~~~-~~~~~~~d~vi~~v   71 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCS-VNLV----ETDGS--IFNESL-TAND-PDFLATSDLLLVTL   71 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEE-EEEE----CTTSC--EEEEEE-EESC-HHHHHTCSEEEECS
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceee-EEEE----cCCCc--eeeeee-eecC-ccccCCCCEEEEEe
Confidence            37999999999999999999999999999997654211 1000    00010  000000 1123 46778999999999


Q ss_pred             CCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          234 SLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       234 p~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      |.. ++..++. +... .+++++++|++.-|
T Consensus        72 ~~~-~~~~v~~-~l~~-~l~~~~~vv~~~~g   99 (291)
T 1ks9_A           72 KAW-QVSDAVK-SLAS-TLPVTTPILLIHNG   99 (291)
T ss_dssp             CGG-GHHHHHH-HHHT-TSCTTSCEEEECSS
T ss_pred             cHH-hHHHHHH-HHHh-hCCCCCEEEEecCC
Confidence            954 4554442 2445 68889999987655

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.32  E-value=4.2e-06  Score=76.85  Aligned_cols=129  Identities=16%  Similarity=0.133  Sum_probs=89.9

Q ss_pred             CcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-
Q 024297           99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-  177 (269)
Q Consensus        99 gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-  177 (269)
                      .|++.|. +-     ...|=-+++.+++..|-                .++.+.+.+|.|+|.|..|..+|+.|.+.|. 
T Consensus       160 ~Ipvf~D-Di-----qGTasV~lAal~~A~~i----------------~g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~  217 (388)
T 1vl6_A          160 NIPVFHD-DQ-----QGTAVVVSAAFLNALKL----------------TEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVK  217 (388)
T ss_dssp             SSCEEEH-HH-----HHHHHHHHHHHHHHHHH----------------HTCCTTTCEEEEECCSHHHHHHHHHHHHHTCC
T ss_pred             Ccceecc-cc-----ccHHHHHHHHHHHHHHH----------------hCCCCCCcEEEEECCCHHHHHHHHHHHhCCCC
Confidence            5777763 21     23444555555555552                2457999999999999999999999999999 


Q ss_pred             EEEEEcCC----CCCc---cccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhh
Q 024297          178 KIIATKRS----WASH---SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSK  250 (269)
Q Consensus       178 ~V~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~  250 (269)
                      +|+.+|++    ..+.   ....+  ..|+-.+       .......+|.+.++++|+++-+.  .   -++++++.++ 
T Consensus       218 ~I~v~Dr~Gli~~~R~~~~L~~~k--~~~A~~~-------~~~~~~~~L~eav~~ADVlIG~S--a---p~l~t~emVk-  282 (388)
T 1vl6_A          218 NVVAVDRKGILNENDPETCLNEYH--LEIARIT-------NPERLSGDLETALEGADFFIGVS--R---GNILKPEWIK-  282 (388)
T ss_dssp             EEEEEETTEECCTTSGGGCSSHHH--HHHHHTS-------CTTCCCSCHHHHHTTCSEEEECS--C---SSCSCHHHHT-
T ss_pred             eEEEEECCCcccCCCcccccCHHH--HHHHHhh-------hccCchhhHHHHHccCCEEEEeC--C---CCccCHHHHH-
Confidence            89999998    3331   00000  0111000       00113467999999999998883  1   3999999999 


Q ss_pred             hCCCCcEEEEccCC
Q 024297          251 SMFFATYVVFMFQG  264 (269)
Q Consensus       251 ~mk~ga~lIN~~RG  264 (269)
                      .|+++++++-+++.
T Consensus       283 ~Ma~~pIIfalSNP  296 (388)
T 1vl6_A          283 KMSRKPVIFALANP  296 (388)
T ss_dssp             TSCSSCEEEECCSS
T ss_pred             hcCCCCEEEEcCCC
Confidence            99999999999874

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.32  E-value=3.7e-07  Score=85.42  Aligned_cols=107  Identities=18%  Similarity=0.207  Sum_probs=66.8

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccccc------ccCCCCCHHHHHhhCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD------EKGCHEDIFEFASKAD  227 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~ell~~aD  227 (269)
                      ++|+|||+|.||..+|..|...|++|+++|++..+........... +..+. .+...      ......++++.+++||
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i-~e~~l-~~~~~~~~~~g~l~~t~~~~~~~~~aD   78 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPI-VEPGL-EALLQQGRQTGRLSGTTDFKKAVLDSD   78 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSS-CCTTH-HHHHHHHHHTTCEEEESCHHHHHHTCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCc-CCCCH-HHHHHhhcccCceEEeCCHHHHhccCC
Confidence            3799999999999999999999999999998754421100000000 00000 00000      0112357888899999


Q ss_pred             EEEEecCCCccccCcCC--------HHHHhhhCCC---CcEEEEccC
Q 024297          228 VVVCCLSLNKQTVKLCS--------SSLSSKSMFF---ATYVVFMFQ  263 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~--------~~~l~~~mk~---ga~lIN~~R  263 (269)
                      +|++++|...+..+..|        ++... .+++   ++++|+.+-
T Consensus        79 vviiaVptp~~~~~~~dl~~v~~v~~~i~~-~l~~~~~~~iVV~~St  124 (436)
T 1mv8_A           79 VSFICVGTPSKKNGDLDLGYIETVCREIGF-AIREKSERHTVVVRST  124 (436)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHHHHHHH-HHTTCCSCCEEEECSC
T ss_pred             EEEEEcCCCcccCCCcchHHHHHHHHHHHH-HhcccCCCcEEEEeCC
Confidence            99999995544223222        22344 6888   999998763

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.31  E-value=6.9e-07  Score=79.56  Aligned_cols=100  Identities=13%  Similarity=0.049  Sum_probs=69.1

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhcccccccccc---ccCCCCCHHHHHh
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD---EKGCHEDIFEFAS  224 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~ell~  224 (269)
                      .++.+++++|+|.|.+|++++..|...|+ +|++++|+.++......             ....   .....+++.+.+.
T Consensus       137 ~~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~-------------~~~~~~~~~~~~~~~~~~~~  203 (297)
T 2egg_A          137 ITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVR-------------EGDERRSAYFSLAEAETRLA  203 (297)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHH-------------HSCSSSCCEECHHHHHHTGG
T ss_pred             CCCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-------------HhhhccCceeeHHHHHhhhc
Confidence            35789999999999999999999999998 99999998644211000             0000   0001135667788


Q ss_pred             hCCEEEEecCCCccc--cC-cCCHHHHhhhCCCCcEEEEccCCC
Q 024297          225 KADVVVCCLSLNKQT--VK-LCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t--~~-li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      ++|+||+++|.....  .. .++   .+ .++++++++++.-.+
T Consensus       204 ~aDivIn~t~~~~~~~~~~~~i~---~~-~l~~~~~v~D~~y~P  243 (297)
T 2egg_A          204 EYDIIINTTSVGMHPRVEVQPLS---LE-RLRPGVIVSDIIYNP  243 (297)
T ss_dssp             GCSEEEECSCTTCSSCCSCCSSC---CT-TCCTTCEEEECCCSS
T ss_pred             cCCEEEECCCCCCCCCCCCCCCC---HH-HcCCCCEEEEcCCCC
Confidence            999999999966431  11 233   24 688999999987643

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.29  E-value=5.9e-07  Score=78.31  Aligned_cols=91  Identities=18%  Similarity=0.111  Sum_probs=67.6

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  227 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  227 (269)
                      +.| +++|||.|.+|++++..|...|+ +|++++|+.++..                 .+.....  ..+++.+.++++|
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~-----------------~la~~~~~~~~~~~~~~~~~aD  168 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAK-----------------ALDFPVKIFSLDQLDEVVKKAK  168 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHH-----------------TCCSSCEEEEGGGHHHHHHTCS
T ss_pred             CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-----------------HHHHHcccCCHHHHHhhhcCCC
Confidence            578 99999999999999999999999 8999999865421                 1111111  2356888899999


Q ss_pred             EEEEecCCC--ccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          228 VVVCCLSLN--KQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       228 vvv~~lp~t--~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +||++.|..  |+ ...++.   + .++++.+++++.-+
T Consensus       169 iVInatp~gm~p~-~~~i~~---~-~l~~~~~V~Divy~  202 (253)
T 3u62_A          169 SLFNTTSVGMKGE-ELPVSD---D-SLKNLSLVYDVIYF  202 (253)
T ss_dssp             EEEECSSTTTTSC-CCSCCH---H-HHTTCSEEEECSSS
T ss_pred             EEEECCCCCCCCC-CCCCCH---H-HhCcCCEEEEeeCC
Confidence            999999864  32 223443   3 56789999998766

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.28  E-value=1.4e-07  Score=79.05  Aligned_cols=99  Identities=19%  Similarity=0.196  Sum_probs=65.0

Q ss_pred             CEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      ++|+|+| .|.||+.+++.|...|++|++++|+.++... ........++.+       .. ...++.++++++|+|+++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~-------~~-~~~~~~~~~~~~D~Vi~~   71 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEA-KAAEYRRIAGDA-------SI-TGMKNEDAAEACDIAVLT   71 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHH-HHHHHHHHHSSC-------CE-EEEEHHHHHHHCSEEEEC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHhccccccC-------CC-ChhhHHHHHhcCCEEEEe
Confidence            3799999 9999999999999999999999987543111 000000000000       00 124688889999999999


Q ss_pred             cCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          233 LSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       233 lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +| ...++.++. +... .++ ++++|+++.|-
T Consensus        72 ~~-~~~~~~~~~-~l~~-~~~-~~~vi~~~~g~  100 (212)
T 1jay_A           72 IP-WEHAIDTAR-DLKN-ILR-EKIVVSPLVPV  100 (212)
T ss_dssp             SC-HHHHHHHHH-HTHH-HHT-TSEEEECCCCE
T ss_pred             CC-hhhHHHHHH-HHHH-HcC-CCEEEEcCCCc
Confidence            98 334444432 2334 454 89999998763

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.27  E-value=5.6e-07  Score=80.53  Aligned_cols=102  Identities=20%  Similarity=0.199  Sum_probs=64.3

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcC--CCCCccccccccchhhhccccccccccccCCCC--CHHHHHhhCCEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKR--SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE--DIFEFASKADVV  229 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~ell~~aDvv  229 (269)
                      ++|+|||.|.||..+|..|...|.+|++++|  +..........  ......| . .. .......  ++.+.++++|+|
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~--~~~~~~g-~-~~-~~~~~~~~~~~~~~~~~~D~v   75 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAG--REHPRLG-V-KL-NGVEIFWPEQLEKCLENAEVV   75 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTT--CCBTTTT-B-CC-CSEEEECGGGHHHHHTTCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHh--CcCcccC-c-cc-cceEEecHHhHHHHHhcCCEE
Confidence            3799999999999999999999999999998  54321110000  0000000 0 00 0000113  677888999999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      ++++|.. .+..++  +.+.. +++++++|++..|
T Consensus        76 i~~v~~~-~~~~v~--~~i~~-l~~~~~vv~~~ng  106 (335)
T 1txg_A           76 LLGVSTD-GVLPVM--SRILP-YLKDQYIVLISKG  106 (335)
T ss_dssp             EECSCGG-GHHHHH--HHHTT-TCCSCEEEECCCS
T ss_pred             EEcCChH-HHHHHH--HHHhc-CCCCCEEEEEcCc
Confidence            9999944 444433  13442 6789999998766

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.27  E-value=3.1e-07  Score=83.09  Aligned_cols=108  Identities=18%  Similarity=0.201  Sum_probs=68.2

Q ss_pred             CCEEEEEecCchHHHHHHHhccCC-------CEEEEEcCCCCCc----cccccc-cchhhhccccccccccccCCCCCHH
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFG-------VKIIATKRSWASH----SQVSCQ-SSALAVKNGIIDDLVDEKGCHEDIF  220 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G-------~~V~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~  220 (269)
                      .++|+|||.|.||..+|..|...|       .+|++++|+....    ...... .....+.+|.  ..........++.
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~   85 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGH--KLPPNVVAVPDVV   85 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTC--CCCTTEEEESSHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcc--cCccCeEEEcCHH
Confidence            368999999999999999999888       8999999976511    000000 0000000000  0000000125788


Q ss_pred             HHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          221 EFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       221 ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      ++++++|+|++++|. ..+..++. +... .+++++++|++.-|-
T Consensus        86 ~~~~~aD~Vilav~~-~~~~~v~~-~i~~-~l~~~~ivv~~~~Gi  127 (354)
T 1x0v_A           86 QAAEDADILIFVVPH-QFIGKICD-QLKG-HLKANATGISLIKGV  127 (354)
T ss_dssp             HHHTTCSEEEECCCG-GGHHHHHH-HHTT-CSCTTCEEEECCCCB
T ss_pred             HHHcCCCEEEEeCCH-HHHHHHHH-HHHh-hCCCCCEEEEECCcc
Confidence            889999999999994 44444442 2334 678899999998774

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.25  E-value=5.4e-07  Score=84.29  Aligned_cols=111  Identities=14%  Similarity=0.108  Sum_probs=66.7

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccc----cCCCCCHHHHH
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE----KGCHEDIFEFA  223 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~ell  223 (269)
                      +++..-++|+|||+|.||..+|..|.. |.+|++||++..+-........+. +..| .++....    .....++.+++
T Consensus        31 ~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i-~e~~-l~~ll~~~~~~l~~ttd~~ea~  107 (432)
T 3pid_A           31 GRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPI-VDKE-IQEYLAEKPLNFRATTDKHDAY  107 (432)
T ss_dssp             ----CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSS-CCHH-HHHHHHHSCCCEEEESCHHHHH
T ss_pred             ccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCcc-cccc-HHHHHhhccCCeEEEcCHHHHH
Confidence            456666799999999999999999988 999999998765421100000000 0000 0011110    11236788999


Q ss_pred             hhCCEEEEecCCCccc-------cCcCC-HHHHhhhCCCCcEEEEcc
Q 024297          224 SKADVVVCCLSLNKQT-------VKLCS-SSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       224 ~~aDvvv~~lp~t~~t-------~~li~-~~~l~~~mk~ga~lIN~~  262 (269)
                      ++||+|++++|...+.       ..+.. .+.+. .+++|+++|+.+
T Consensus       108 ~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~-~l~~g~iVV~~S  153 (432)
T 3pid_A          108 RNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVT-EINPNAVMIIKS  153 (432)
T ss_dssp             TTCSEEEECCCCEEETTTTEEECHHHHHHHHHHH-HHCTTSEEEECS
T ss_pred             hCCCEEEEeCCCccccccccccHHHHHHHHHHHH-hcCCCcEEEEeC
Confidence            9999999999944221       12211 12345 389999999876

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.23  E-value=3.3e-07  Score=77.84  Aligned_cols=88  Identities=26%  Similarity=0.276  Sum_probs=59.8

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEE-EcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEE
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVV  229 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvv  229 (269)
                      -++|+|||+|.||+.+|+.|...|++|++ ++|+.++...                 .....+  ...+..+.++++|+|
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~-----------------l~~~~g~~~~~~~~~~~~~aDvV   85 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSS-----------------VTDRFGASVKAVELKDALQADVV   85 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHH-----------------HHHHHTTTEEECCHHHHTTSSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHH-----------------HHHHhCCCcccChHHHHhcCCEE
Confidence            36899999999999999999999999999 9987654211                 111111  112334568999999


Q ss_pred             EEecCCCccccCcCCHHHHhhhC--CCCcEEEEccCC
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSM--FFATYVVFMFQG  264 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~m--k~ga~lIN~~RG  264 (269)
                      ++++|. .....     .+. .+  .++.++|+++-|
T Consensus        86 ilavp~-~~~~~-----v~~-~l~~~~~~ivi~~~~g  115 (220)
T 4huj_A           86 ILAVPY-DSIAD-----IVT-QVSDWGGQIVVDASNA  115 (220)
T ss_dssp             EEESCG-GGHHH-----HHT-TCSCCTTCEEEECCCC
T ss_pred             EEeCCh-HHHHH-----HHH-HhhccCCCEEEEcCCC
Confidence            999983 22222     333 33  357789988744

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.23  E-value=8.7e-07  Score=76.64  Aligned_cols=86  Identities=14%  Similarity=0.255  Sum_probs=60.4

Q ss_pred             CCEEEEEecCchHHHHHHHhccCC----CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      .++|+|||+|.||+.+++.|...|    .+|++|||+..+  .            |     ..   ...+..++++++|+
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~--~------------g-----~~---~~~~~~~~~~~~D~   61 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN--T------------T-----LN---YMSSNEELARHCDI   61 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS--S------------S-----SE---ECSCHHHHHHHCSE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc--C------------c-----eE---EeCCHHHHHhcCCE
Confidence            458999999999999999999888    689999987543  0            0     00   12467888999999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      |++++| ....+.++. +... .+ ++..+|...-|
T Consensus        62 vi~~v~-~~~~~~v~~-~l~~-~l-~~~~vv~~~~g   93 (262)
T 2rcy_A           62 IVCAVK-PDIAGSVLN-NIKP-YL-SSKLLISICGG   93 (262)
T ss_dssp             EEECSC-TTTHHHHHH-HSGG-GC-TTCEEEECCSS
T ss_pred             EEEEeC-HHHHHHHHH-HHHH-hc-CCCEEEEECCC
Confidence            999999 445544443 2334 55 45555554433

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.22  E-value=1.9e-07  Score=85.11  Aligned_cols=107  Identities=14%  Similarity=0.123  Sum_probs=67.1

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS  234 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp  234 (269)
                      +|+|||.|.||..+|..|...|.+|++++|+...............+.+|.  ..........++.++++.+|+|++++|
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~aDvVilav~   94 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGV--QLASNITFTSDVEKAYNGAEIILFVIP   94 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTC--BCCTTEEEESCHHHHHTTCSSEEECCC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCccccccccc--ccccceeeeCCHHHHHcCCCEEEECCC
Confidence            899999999999999999999999999998754311100000000000000  000000012578888999999999999


Q ss_pred             CCccccCcCCHH---HHhhhCCC-CcEEEEccCCC
Q 024297          235 LNKQTVKLCSSS---LSSKSMFF-ATYVVFMFQGH  265 (269)
Q Consensus       235 ~t~~t~~li~~~---~l~~~mk~-ga~lIN~~RG~  265 (269)
                      . .....++...   ... .+++ ++++|++..|-
T Consensus        95 ~-~~~~~v~~~~~~gl~~-~l~~~~~ivv~~~~gi  127 (366)
T 1evy_A           95 T-QFLRGFFEKSGGNLIA-YAKEKQVPVLVCTKGI  127 (366)
T ss_dssp             H-HHHHHHHHHHCHHHHH-HHHHHTCCEEECCCSC
T ss_pred             h-HHHHHHHHHhHHHHHH-hcCccCCEEEEECCcC
Confidence            4 4444444321   334 5777 89999998764

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.21  E-value=2.1e-07  Score=82.26  Aligned_cols=104  Identities=16%  Similarity=0.155  Sum_probs=62.6

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH---HhhCCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF---ASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~aDvvv  230 (269)
                      ++|+|||.|.||..+|..|...|.+|++++|+..........  .......  ...........+..++   ++++|+|+
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~--g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~vi   79 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKN--GLIADFN--GEEVVANLPIFSPEEIDHQNEQVDLII   79 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH--CEEEEET--TEEEEECCCEECGGGCCTTSCCCSEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhC--CEEEEeC--CCeeEecceeecchhhcccCCCCCEEE
Confidence            489999999999999999999999999999875431110000  0000000  0000000000122233   34899999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +++|. ..+..++. +... .+++++++|++.-|
T Consensus        80 ~~v~~-~~~~~v~~-~l~~-~l~~~~~iv~~~~g  110 (316)
T 2ew2_A           80 ALTKA-QQLDAMFK-AIQP-MITEKTYVLCLLNG  110 (316)
T ss_dssp             ECSCH-HHHHHHHH-HHGG-GCCTTCEEEECCSS
T ss_pred             EEecc-ccHHHHHH-HHHH-hcCCCCEEEEecCC
Confidence            99994 45555442 2444 68899999998765

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=98.21  E-value=1e-06  Score=81.28  Aligned_cols=83  Identities=22%  Similarity=0.243  Sum_probs=69.0

Q ss_pred             cCCEEEEEec-CchHHHHHHHhccCCC---EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          152 LGKTVFILGF-GNIGVELAKRLRPFGV---KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       152 ~g~~vgIiG~-G~iG~~~a~~l~~~G~---~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      ...+|.|||. |.+|+..++.++++|+   +|.++|++....                        +.  .+ +.+.++|
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~------------------------g~--~~-~~i~~aD  265 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR------------------------GG--PF-DEIPQAD  265 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT------------------------CS--CC-THHHHSS
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc------------------------CC--ch-hhHhhCC
Confidence            3568899999 9999999999999998   899999754220                        00  01 3467999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhC-CCCcEEEEcc
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSM-FFATYVVFMF  262 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~m-k~ga~lIN~~  262 (269)
                      +||.++......-.+++++.++ .| |||+++|+++
T Consensus       266 ivIn~vlig~~aP~Lvt~e~v~-~m~k~gsVIVDVA  300 (394)
T 2qrj_A          266 IFINCIYLSKPIAPFTNMEKLN-NPNRRLRTVVDVS  300 (394)
T ss_dssp             EEEECCCCCSSCCCSCCHHHHC-CTTCCCCEEEETT
T ss_pred             EEEECcCcCCCCCcccCHHHHh-cCcCCCeEEEEEe
Confidence            9999999877777899999999 99 9999999997

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.19  E-value=1.3e-07  Score=81.87  Aligned_cols=86  Identities=21%  Similarity=0.295  Sum_probs=58.7

Q ss_pred             CEEEEEecCchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv  230 (269)
                      .+|+|||+|.||+.+++.|...| .+|.+++|+..+...                 .....+  ...++.+++ ++|+|+
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~-----------------~~~~~g~~~~~~~~~~~-~~D~vi   62 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRER-----------------LEKELGVETSATLPELH-SDDVLI   62 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHH-----------------HHHHTCCEEESSCCCCC-TTSEEE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHH-----------------HHHhcCCEEeCCHHHHh-cCCEEE
Confidence            37999999999999999999889 999999987543111                 000001  113444567 999999


Q ss_pred             EecCCCccccCcCCHHHHhhhCC-CCcEEEEccCC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMF-FATYVVFMFQG  264 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk-~ga~lIN~~RG  264 (269)
                      +++| ....+.     .+. .++ +++++|+++-|
T Consensus        63 ~~v~-~~~~~~-----v~~-~l~~~~~ivv~~~~g   90 (263)
T 1yqg_A           63 LAVK-PQDMEA-----ACK-NIRTNGALVLSVAAG   90 (263)
T ss_dssp             ECSC-HHHHHH-----HHT-TCCCTTCEEEECCTT
T ss_pred             EEeC-chhHHH-----HHH-HhccCCCEEEEecCC
Confidence            9999 444333     333 343 28899988654

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.19  E-value=5.7e-07  Score=83.54  Aligned_cols=97  Identities=21%  Similarity=0.214  Sum_probs=68.8

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD  227 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD  227 (269)
                      .-|.||||+|||||+-|++-|..|+..|.+|++--|.........+            .....+.+ ...++.|+.++||
T Consensus        33 ~~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S------------~~~A~~~Gf~v~~~~eA~~~AD  100 (491)
T 3ulk_A           33 SYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRAS------------WRKATENGFKVGTYEELIPQAD  100 (491)
T ss_dssp             GGGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHH------------HHHHHHTTCEEEEHHHHGGGCS
T ss_pred             HHHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccch------------HHHHHHCCCEecCHHHHHHhCC
Confidence            5689999999999999999999999999999887663210000000            00111112 3467999999999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEE
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVF  260 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN  260 (269)
                      +|++.+|...+ ..+. ++... .||+|+.|.-
T Consensus       101 vV~~L~PD~~q-~~vy-~~I~p-~lk~G~~L~f  130 (491)
T 3ulk_A          101 LVINLTPDKQH-SDVV-RTVQP-LMKDGAALGY  130 (491)
T ss_dssp             EEEECSCGGGH-HHHH-HHHGG-GSCTTCEEEE
T ss_pred             EEEEeCChhhH-HHHH-HHHHh-hCCCCCEEEe
Confidence            99999995433 3344 45666 9999998873

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.17  E-value=2.5e-06  Score=74.93  Aligned_cols=95  Identities=17%  Similarity=0.120  Sum_probs=66.7

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      ++++.|||.|.+|++++..|...|.+|++++|+.++..... .   +    +     . .....+++    .++|+||++
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~---~----~-----~-~~~~~~~l----~~~DiVIna  179 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-R---L----G-----C-DCFMEPPK----SAFDLIINA  179 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-H---H----T-----C-EEESSCCS----SCCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-H---C----C-----C-eEecHHHh----ccCCEEEEc
Confidence            88999999999999999999999999999999876621110 0   0    0     0 00022333    289999999


Q ss_pred             cCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          233 LSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       233 lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      .|........++.+.+...++++++++++...+
T Consensus       180 Tp~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY~P  212 (269)
T 3phh_A          180 TSASLHNELPLNKEVLKGYFKEGKLAYDLAYGF  212 (269)
T ss_dssp             CTTCCCCSCSSCHHHHHHHHHHCSEEEESCCSS
T ss_pred             ccCCCCCCCCCChHHHHhhCCCCCEEEEeCCCC
Confidence            997644334567663321577899999987654

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.16  E-value=2.9e-06  Score=79.34  Aligned_cols=96  Identities=15%  Similarity=0.237  Sum_probs=61.9

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH-------
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-------  222 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-------  222 (269)
                      .-.|+++.|||+|.||..+|..|...|++|++||++.++-...         ..|...     . ....++++       
T Consensus         8 ~~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L---------~~g~~p-----i-~epgl~~ll~~~~~~   72 (431)
T 3ojo_A            8 HHHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKL---------QNGQIS-----I-EEPGLQEVYEEVLSS   72 (431)
T ss_dssp             ----CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH---------HTTCCS-----S-CCTTHHHHHHHHHHT
T ss_pred             cccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH---------HCCCCC-----c-CCCCHHHHHHhhccc
Confidence            3467899999999999999999999999999999986542110         011000     0 00122222       


Q ss_pred             --------HhhCCEEEEecCCCcccc---------CcCC--HHHHhhhCCCCcEEEEcc
Q 024297          223 --------ASKADVVVCCLSLNKQTV---------KLCS--SSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       223 --------l~~aDvvv~~lp~t~~t~---------~li~--~~~l~~~mk~ga~lIN~~  262 (269)
                              +++||+|++++| ||...         .+..  +...+ .|++|+++|+.+
T Consensus        73 g~l~~ttd~~~aDvvii~Vp-Tp~~~~~~~~~Dl~~V~~~~~~i~~-~l~~g~iVV~~S  129 (431)
T 3ojo_A           73 GKLKVSTTPEASDVFIIAVP-TPNNDDQYRSCDISLVMRALDSILP-FLKKGNTIIVES  129 (431)
T ss_dssp             TCEEEESSCCCCSEEEECCC-CCBCSSSSCBBCCHHHHHHHHHHGG-GCCTTEEEEECS
T ss_pred             CceEEeCchhhCCEEEEEeC-CCccccccCCccHHHHHHHHHHHHH-hCCCCCEEEEec
Confidence                    347999999999 44321         1222  33455 799999999876

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.16  E-value=1.2e-06  Score=83.06  Aligned_cols=106  Identities=13%  Similarity=0.139  Sum_probs=67.1

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccccc------ccCCCCCHHHHHhhC
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD------EKGCHEDIFEFASKA  226 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~ell~~a  226 (269)
                      ..+|+|||+|.||..+|..|...|++|+++|++..+-......... .+-.|. .+...      ......++++.+++|
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~-i~e~gl-~~~l~~~~~~~~l~~ttd~~~a~~~a   85 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVP-IHEPGL-KEVIARNRSAGRLRFSTDIEAAVAHG   85 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCS-SCCTTH-HHHHHHHHHTTCEEEECCHHHHHHHC
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCC-cCCCCH-HHHHHHhcccCCEEEECCHHHHhhcC
Confidence            4699999999999999999999999999999875432111000000 000010 00110      011235788889999


Q ss_pred             CEEEEecCCCc---------cccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNK---------QTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~---------~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|++++|...         ..+..+ ++... .+++++++|+.+
T Consensus        86 DvviiaVptp~~~~~~~dl~~v~~v~-~~i~~-~l~~~~iVV~~S  128 (478)
T 2y0c_A           86 DVQFIAVGTPPDEDGSADLQYVLAAA-RNIGR-YMTGFKVIVDKS  128 (478)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHH-HHHHH-HCCSCEEEEECS
T ss_pred             CEEEEEeCCCcccCCCccHHHHHHHH-HHHHH-hcCCCCEEEEeC
Confidence            99999999421         222222 22345 799999999986

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.16  E-value=2e-06  Score=81.46  Aligned_cols=106  Identities=21%  Similarity=0.301  Sum_probs=65.4

Q ss_pred             CEEEEEecCchHHHHHHHhccC-CC-EEEEEcCCCC----Cccccccccchhh-hcccccccccc---ccC---CCCCHH
Q 024297          154 KTVFILGFGNIGVELAKRLRPF-GV-KIIATKRSWA----SHSQVSCQSSALA-VKNGIIDDLVD---EKG---CHEDIF  220 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~-G~-~V~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~---~~~---~~~~l~  220 (269)
                      ++|+|||+|.||..+|..|... |. +|++||++..    +-........... +..|. ++...   ..+   ...+ .
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl-~~l~~~~~~~g~l~~ttd-~   96 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGL-EELIGKVVKAGKFECTPD-F   96 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGH-HHHHHHHHHTTCEEEESC-G
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCH-HHHHHhhcccCCeEEeCc-H
Confidence            5899999999999999999999 99 9999999876    2111000000000 00000 00000   011   1234 5


Q ss_pred             HHHhhCCEEEEecCCCcc--------ccCcCC--HHHHhhhCCCCcEEEEcc
Q 024297          221 EFASKADVVVCCLSLNKQ--------TVKLCS--SSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       221 ell~~aDvvv~~lp~t~~--------t~~li~--~~~l~~~mk~ga~lIN~~  262 (269)
                      +.+++||+|++++|....        ...+..  +.... .+++|+++|+.+
T Consensus        97 ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~-~l~~g~iVV~~S  147 (478)
T 3g79_A           97 SRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGK-YLKPGMLVVLES  147 (478)
T ss_dssp             GGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHH-HCCTTCEEEECS
T ss_pred             HHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHh-hcCCCcEEEEeC
Confidence            788999999999995422        222221  33455 799999999976

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.11  E-value=6.5e-07  Score=85.01  Aligned_cols=108  Identities=18%  Similarity=0.108  Sum_probs=66.4

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccc---cchhhhccccccc-----cccccCCCCCHHHHHh
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ---SSALAVKNGIIDD-----LVDEKGCHEDIFEFAS  224 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~  224 (269)
                      -++|||||.|.||..+|+.+...|++|+++|++..........   .....+..|.+..     .........+++ .++
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~   83 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALA   83 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hhc
Confidence            3589999999999999999999999999999876542111000   0000001111100     000000124454 589


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEE-Ecc
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVV-FMF  262 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lI-N~~  262 (269)
                      +||+|+.++|.+.+.+.-+-++..+ .++++++|+ |++
T Consensus        84 ~aDlVIeAVpe~~~vk~~v~~~l~~-~~~~~~IlasntS  121 (483)
T 3mog_A           84 AADLVIEAASERLEVKKALFAQLAE-VCPPQTLLTTNTS  121 (483)
T ss_dssp             GCSEEEECCCCCHHHHHHHHHHHHH-HSCTTCEEEECCS
T ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHH-hhccCcEEEecCC
Confidence            9999999999765544333344556 799999995 554

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.07  E-value=8.8e-07  Score=79.78  Aligned_cols=99  Identities=17%  Similarity=0.203  Sum_probs=63.0

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      ..+|+|||.|+||..+|..|...|.+|++++|+..+........... +..|.  ..  ......+..+ +..+|+|+++
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~-~~~~~--~~--~~~~~~~~~~-~~~aDvVil~   87 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSP-YVEES--KI--TVRATNDLEE-IKKEDILVIA   87 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBT-TBTTC--CC--CSEEESCGGG-CCTTEEEEEC
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcc-cCCCC--ee--eEEEeCCHHH-hcCCCEEEEE
Confidence            45899999999999999999999999999998754311100000000 00000  00  0011245667 8899999999


Q ss_pred             cCCCccccCcCCHHHHhhhCC-CCcEEEEccCC
Q 024297          233 LSLNKQTVKLCSSSLSSKSMF-FATYVVFMFQG  264 (269)
Q Consensus       233 lp~t~~t~~li~~~~l~~~mk-~ga~lIN~~RG  264 (269)
                      +| +.+++..     +. .++ +++++|++.-|
T Consensus        88 vk-~~~~~~v-----~~-~l~~~~~~vv~~~nG  113 (335)
T 1z82_A           88 IP-VQYIREH-----LL-RLPVKPSMVLNLSKG  113 (335)
T ss_dssp             SC-GGGHHHH-----HT-TCSSCCSEEEECCCC
T ss_pred             CC-HHHHHHH-----HH-HhCcCCCEEEEEeCC
Confidence            98 3444433     33 344 78899999876

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.07  E-value=8.2e-07  Score=81.25  Aligned_cols=106  Identities=13%  Similarity=0.128  Sum_probs=65.4

Q ss_pred             CEEEEEecCchHHHHHHHhccCC-------CEEEEEcCCCC-----CccccccccchhhhccccccccccccCCCCCHHH
Q 024297          154 KTVFILGFGNIGVELAKRLRPFG-------VKIIATKRSWA-----SHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE  221 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G-------~~V~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  221 (269)
                      ++|+|||.|.||..+|..|...|       .+|++++|+..     .............+..|.  ..........++.+
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~i~~~~~~~e   99 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGV--PLPHNIVAHSDLAS   99 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTC--BCCTTEEEESSTHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcc--cCcCCeEEECCHHH
Confidence            47999999999999999998888       99999998765     211000000000000010  00000011246778


Q ss_pred             HHhhCCEEEEecCCCccccCcCCHHHHhh----hCCCCcEEEEccCC
Q 024297          222 FASKADVVVCCLSLNKQTVKLCSSSLSSK----SMFFATYVVFMFQG  264 (269)
Q Consensus       222 ll~~aDvvv~~lp~t~~t~~li~~~~l~~----~mk~ga~lIN~~RG  264 (269)
                      +++++|+|++++| +...+.++.  .+..    .+++++++|++.-|
T Consensus       100 a~~~aDvVilav~-~~~~~~vl~--~i~~~~~~~l~~~~ivvs~~~G  143 (375)
T 1yj8_A          100 VINDADLLIFIVP-CQYLESVLA--SIKESESIKIASHAKAISLTKG  143 (375)
T ss_dssp             HHTTCSEEEECCC-HHHHHHHHH--HHTC---CCCCTTCEEEECCCS
T ss_pred             HHcCCCEEEEcCC-HHHHHHHHH--HHhhhhhccCCCCCEEEEeCCc
Confidence            8999999999999 344444432  2332    36679999998876

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.07  E-value=2.7e-06  Score=80.64  Aligned_cols=106  Identities=14%  Similarity=0.115  Sum_probs=64.3

Q ss_pred             CEEEEEecCchHHHHHHHhccC--CCEEEEEcCCCCCccccccccchhhhcccccccccc-----ccCCCCCHHHHHhhC
Q 024297          154 KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-----EKGCHEDIFEFASKA  226 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~ell~~a  226 (269)
                      ++|+|||+|.||..+|..|...  |.+|+++|++..+........... +-.|. .+...     ......++.+.+++|
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i-~e~gl-~~~~~~~~~~~l~~t~~~~~~~~~a   87 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPI-YEPGL-DEIVFAARGRNLFFSSDIPKAIAEA   87 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSS-CCTTH-HHHHHHHBTTTEEEESCHHHHHHHC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCc-CCCCH-HHHHHHhhcCCEEEECCHHHHhhcC
Confidence            5899999999999999999876  799999998764421100000000 00000 00000     011125677889999


Q ss_pred             CEEEEecCCCcccc-----------CcC--CHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTV-----------KLC--SSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~-----------~li--~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|++++|......           .+.  -++... .+++++++|+.+
T Consensus        88 Dvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~-~l~~g~iVV~~S  135 (481)
T 2o3j_A           88 DLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQ-YAGGPKIVVEKS  135 (481)
T ss_dssp             SEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHH-HCCSCEEEEECS
T ss_pred             CEEEEecCCccccccccccCCCcHHHHHHHHHHHHH-hCCCCCEEEECC
Confidence            99999998433210           111  122445 799999999864

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=98.05  E-value=5.4e-05  Score=67.65  Aligned_cols=139  Identities=14%  Similarity=0.093  Sum_probs=94.0

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEe-cCchHHHHHHHh
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILG-FGNIGVELAKRL  172 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG-~G~iG~~~a~~l  172 (269)
                      .+...+|+|.|..+.   +..++  .+|+-++.+.+.+                 ..+.|.+|+++| .+++.+.++..+
T Consensus       117 lA~~~~vPVINag~~---~~HPt--QaLaDl~Ti~e~~-----------------g~l~glkva~vGD~~~va~Sl~~~~  174 (309)
T 4f2g_A          117 FAENSRVPVINGLTN---EYHPC--QVLADIFTYYEHR-----------------GPIRGKTVAWVGDANNMLYTWIQAA  174 (309)
T ss_dssp             HHHTCSSCEEEEECS---SCCHH--HHHHHHHHHHHHH-----------------SCCTTCEEEEESCCCHHHHHHHHHH
T ss_pred             HHHhCCCCEEECCCC---ccCcH--HHHHHHHHHHHHh-----------------CCCCCCEEEEECCCcchHHHHHHHH
Confidence            345568999999764   55666  6666677666553                 358999999999 678999999999


Q ss_pred             ccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec----CC---Cc-----ccc
Q 024297          173 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL----SL---NK-----QTV  240 (269)
Q Consensus       173 ~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l----p~---t~-----~t~  240 (269)
                      ..+|++|.++.+..-.......     .-.+|      .......+++++++++|||..-.    ..   .+     -..
T Consensus       175 ~~~G~~v~~~~P~~~~~~~~~~-----~~~~g------~~v~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~r~~~~~~  243 (309)
T 4f2g_A          175 RILDFKLQLSTPPGYALDAKLV-----DAESA------PFYQVFDDPNEACKGADLVTTDVWTSMGFEAENEARKRAFAD  243 (309)
T ss_dssp             HHHTCEEEEECCGGGCCCGGGS-----CGGGG------GGEEECSSHHHHTTTCSEEEECCC------------CCSGGG
T ss_pred             HHcCCEEEEECCcccCCCHHHH-----HHHcC------CeEEEEcCHHHHhcCCCEEEecccccCcchhhHHHHHHHhcC
Confidence            9999999999864321110000     00000      01112468999999999998854    10   00     123


Q ss_pred             CcCCHHHHhhhCCCCcEEEEcc---CCCC
Q 024297          241 KLCSSSLSSKSMFFATYVVFMF---QGHG  266 (269)
Q Consensus       241 ~li~~~~l~~~mk~ga~lIN~~---RG~~  266 (269)
                      .-+|.+.++ .+|++++|.-+.   ||.=
T Consensus       244 y~v~~~~l~-~a~~~ai~mH~lP~~Rg~E  271 (309)
T 4f2g_A          244 WCVDEEMMS-HANSDALFMHCLPAHRGEE  271 (309)
T ss_dssp             GCBCHHHHT-TSCTTCEEEECSSCCBTTT
T ss_pred             ceeCHHHHH-hcCCCeEEECCCCCCCCce
Confidence            568999999 999999998876   5643

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.05  E-value=1.2e-05  Score=64.20  Aligned_cols=105  Identities=17%  Similarity=0.188  Sum_probs=61.2

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH-HhhCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKAD  227 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aD  227 (269)
                      ....+++|.|+|+|.+|+.+++.|+..|.+|+++++++.+.......       .|. ..........+.+.+. +..+|
T Consensus        15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~-------~g~-~~~~~d~~~~~~l~~~~~~~ad   86 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSE-------FSG-FTVVGDAAEFETLKECGMEKAD   86 (155)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTT-------CCS-EEEESCTTSHHHHHTTTGGGCS
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhc-------CCC-cEEEecCCCHHHHHHcCcccCC
Confidence            45778899999999999999999999999999999876542111000       000 0000000011123333 67899


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +|+.++|....+..+  ..... .+.+...+|-...+
T Consensus        87 ~Vi~~~~~~~~~~~~--~~~~~-~~~~~~~iv~~~~~  120 (155)
T 2g1u_A           87 MVFAFTNDDSTNFFI--SMNAR-YMFNVENVIARVYD  120 (155)
T ss_dssp             EEEECSSCHHHHHHH--HHHHH-HTSCCSEEEEECSS
T ss_pred             EEEEEeCCcHHHHHH--HHHHH-HHCCCCeEEEEECC
Confidence            999999843322111  22333 45555666655544

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=98.01  E-value=3.8e-05  Score=68.16  Aligned_cols=77  Identities=17%  Similarity=0.209  Sum_probs=65.0

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||++.|||-++ +|+.+|.+|...|+.|+.+...                              ..+|.+..++|
T Consensus       174 ~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~------------------------------T~dl~~~~~~A  223 (303)
T 4b4u_A          174 NIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSR------------------------------TQNLPELVKQA  223 (303)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT------------------------------CSSHHHHHHTC
T ss_pred             CCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCC------------------------------CCCHHHHhhcC
Confidence            4689999999999776 5999999999999999998632                              24788999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+||.++.-    .+++..+    ..|+|+++|++|
T Consensus       224 DIvV~A~G~----p~~i~~d----~vk~GavVIDVG  251 (303)
T 4b4u_A          224 DIIVGAVGK----AELIQKD----WIKQGAVVVDAG  251 (303)
T ss_dssp             SEEEECSCS----TTCBCGG----GSCTTCEEEECC
T ss_pred             CeEEeccCC----CCccccc----cccCCCEEEEec
Confidence            999999752    3688874    578999999997

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.01  E-value=6e-06  Score=76.45  Aligned_cols=95  Identities=13%  Similarity=0.093  Sum_probs=61.3

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccc-------ccccc----ccCCCCCHHHH
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII-------DDLVD----EKGCHEDIFEF  222 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~----~~~~~~~l~el  222 (269)
                      ++|+|||+|.||..+|..|.. |.+|+++|++..+... .        ..++.       .+...    ......+..+.
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~-l--------~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~   70 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDK-I--------NNGLSPIQDEYIEYYLKSKQLSIKATLDSKAA   70 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHH-H--------HTTCCSSCCHHHHHHHHHSCCCEEEESCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHH-H--------HcCCCCcCCCCHHHHHHhccCcEEEeCCHHHH
Confidence            379999999999999999999 9999999987543211 0        01110       00000    00112467788


Q ss_pred             HhhCCEEEEecCCCcc----------ccCcCCHHHHhhhCCCCcEEEEc
Q 024297          223 ASKADVVVCCLSLNKQ----------TVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       223 l~~aDvvv~~lp~t~~----------t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      ++++|+|++++|....          ....+  +.+. .+++++++|+.
T Consensus        71 ~~~aDvviiavpt~~~~~~~~~dl~~v~~v~--~~i~-~l~~~~iVV~~  116 (402)
T 1dlj_A           71 YKEAELVIIATPTNYNSRINYFDTQHVETVI--KEVL-SVNSHATLIIK  116 (402)
T ss_dssp             HHHCSEEEECCCCCEETTTTEECCHHHHHHH--HHHH-HHCSSCEEEEC
T ss_pred             hcCCCEEEEecCCCcccCCCCccHHHHHHHH--HHHH-hhCCCCEEEEe
Confidence            9999999999995421          22221  2344 27889999873

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=98.01  E-value=6.8e-05  Score=66.81  Aligned_cols=131  Identities=15%  Similarity=0.088  Sum_probs=93.0

Q ss_pred             HhcCCcEEEecCC-CCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecC---chHHHHHH
Q 024297           95 ATRCGIKVARIPG-DVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG---NIGVELAK  170 (269)
Q Consensus        95 ~~~~gI~v~n~~~-~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G---~iG~~~a~  170 (269)
                      +...+|+|.|..+ .   +..++  .+|+-++.+.+.+                 ..+.|.+|+++|=|   ++.+.++.
T Consensus       110 a~~~~vPVINagdg~---~~HPt--QaLaDl~Ti~e~~-----------------g~l~glkva~vGD~~~~rva~Sl~~  167 (304)
T 3r7f_A          110 VSQVNIPILNAGDGC---GQHPT--QSLLDLMTIYEEF-----------------NTFKGLTVSIHGDIKHSRVARSNAE  167 (304)
T ss_dssp             HHHCSSCEEESCCTT---SCCHH--HHHHHHHHHHHHH-----------------SCCTTCEEEEESCCTTCHHHHHHHH
T ss_pred             HHhCCCCEEeCCCCC---CcCcH--HHHHHHHHHHHHh-----------------CCCCCCEEEEEcCCCCcchHHHHHH
Confidence            4556899999863 3   44666  6666677766653                 35899999999964   69999999


Q ss_pred             HhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCc---------c--c
Q 024297          171 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNK---------Q--T  239 (269)
Q Consensus       171 ~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~---------~--t  239 (269)
                      .+..+|++|.++.+..-..  .                 ....+...+++++++++|||....--.+         +  .
T Consensus       168 ~~~~~G~~v~~~~P~~~~~--~-----------------~~~~g~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~  228 (304)
T 3r7f_A          168 VLTRLGARVLFSGPSEWQD--E-----------------ENTFGTYVSMDEAVESSDVVMLLRIQNERHQSAVSQEGYLN  228 (304)
T ss_dssp             HHHHTTCEEEEESCGGGSC--T-----------------TCSSCEECCHHHHHHHCSEEEECCCCTTTCCSSCCSTTHHH
T ss_pred             HHHHcCCEEEEECCCccCc--c-----------------hhhcCccCCHHHHhCCCCEEEeccchhhccccchhHHHHhC
Confidence            9999999999998632210  0                 0111234689999999999988531111         0  1


Q ss_pred             cCcCCHHHHhhhCCCCcEEEEcc---CCCCc
Q 024297          240 VKLCSSSLSSKSMFFATYVVFMF---QGHGV  267 (269)
Q Consensus       240 ~~li~~~~l~~~mk~ga~lIN~~---RG~~v  267 (269)
                      ..-++.+.++ .+|++++|.-+.   ||.=|
T Consensus       229 ~y~v~~~~l~-~a~~~ai~mHclP~~Rg~EI  258 (304)
T 3r7f_A          229 KYGLTVERAE-RMKRHAIIMHPAPVNRGVEI  258 (304)
T ss_dssp             HHSBCHHHHT-TSCTTCEEECCSCCCBTTTB
T ss_pred             CCccCHHHHh-hcCCCCEEECCCCCCCCcee
Confidence            2457999999 999999999886   66544

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.99  E-value=2.5e-05  Score=71.85  Aligned_cols=129  Identities=13%  Similarity=0.109  Sum_probs=91.9

Q ss_pred             CcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-
Q 024297           99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-  177 (269)
Q Consensus        99 gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-  177 (269)
                      .|++.|. +-     .-+|=-+++.+++.+|-                .|+.+...+|.|+|.|..|..+|+++.++|. 
T Consensus       156 ~ipvf~D-Di-----qGTa~V~lAall~al~l----------------~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~  213 (398)
T 2a9f_A          156 HIPVFHD-DQ-----HGTAIVVLAAIFNSLKL----------------LKKSLDEVSIVVNGGGSAGLSITRKLLAAGAT  213 (398)
T ss_dssp             SSCEEEH-HH-----HHHHHHHHHHHHHHHHT----------------TTCCTTSCEEEEECCSHHHHHHHHHHHHHTCC
T ss_pred             Ccceecc-hh-----hhHHHHHHHHHHHHHHH----------------hCCCCCccEEEEECCCHHHHHHHHHHHHcCCC
Confidence            5788873 21     33555667777776662                4678999999999999999999999999999 


Q ss_pred             EEEEEcCCCC------CccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhh
Q 024297          178 KIIATKRSWA------SHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKS  251 (269)
Q Consensus       178 ~V~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~  251 (269)
                      +|+.+|++.-      ......+.  .|+-.       ........+|.++++.+|+++-+-     +-++++++.++ .
T Consensus       214 ~I~v~D~~Gli~~~R~~~L~~~k~--~fa~~-------~~~~~~~~~L~eav~~ADV~IG~S-----apgl~T~EmVk-~  278 (398)
T 2a9f_A          214 KVTVVDKFGIINEQEAAQLAPHHL--DIAKV-------TNREFKSGTLEDALEGADIFIGVS-----APGVLKAEWIS-K  278 (398)
T ss_dssp             EEEEEETTEECCTTCCCSCCC-----CHHHH-------HSCTTCCCSCSHHHHTTCSEEECC-----STTCCCHHHHH-T
T ss_pred             eEEEEECCCcccCCccccchHHHH--HHhhc-------cCcccchhhHHHHhccCCEEEecC-----CCCCCCHHHHH-h
Confidence            9999998741      11111110  01000       000112457999999999988773     35899999999 9


Q ss_pred             CCCCcEEEEccCC
Q 024297          252 MFFATYVVFMFQG  264 (269)
Q Consensus       252 mk~ga~lIN~~RG  264 (269)
                      |+++++++-++..
T Consensus       279 Ma~~pIIfalsNP  291 (398)
T 2a9f_A          279 MAARPVIFAMANP  291 (398)
T ss_dssp             SCSSCEEEECCSS
T ss_pred             hCCCCEEEECCCC
Confidence            9999999999875

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.96  E-value=1.6e-05  Score=70.34  Aligned_cols=107  Identities=16%  Similarity=0.065  Sum_probs=70.7

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      .++.++++.|+|.|.+|++++..|...|+ +|++++|+.++.......   +.....   .........+++.+.++++|
T Consensus       123 ~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~---~~~~~~---~~~i~~~~~~~l~~~l~~~D  196 (283)
T 3jyo_A          123 PNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV---INNAVG---REAVVGVDARGIEDVIAAAD  196 (283)
T ss_dssp             TTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHH---HHHHHT---SCCEEEECSTTHHHHHHHSS
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH---HHhhcC---CceEEEcCHHHHHHHHhcCC
Confidence            46889999999999999999999999999 799999986542111100   000000   00000112458889999999


Q ss_pred             EEEEecCCCcccc--CcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          228 VVVCCLSLNKQTV--KLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       228 vvv~~lp~t~~t~--~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +||++.|......  -.++   .+ .++++.+++++.-.+
T Consensus       197 iVInaTp~Gm~~~~~~pi~---~~-~l~~~~~v~DlvY~P  232 (283)
T 3jyo_A          197 GVVNATPMGMPAHPGTAFD---VS-CLTKDHWVGDVVYMP  232 (283)
T ss_dssp             EEEECSSTTSTTSCSCSSC---GG-GCCTTCEEEECCCSS
T ss_pred             EEEECCCCCCCCCCCCCCC---HH-HhCCCCEEEEecCCC
Confidence            9999998642211  1233   34 678889988876544

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.96  E-value=4.4e-06  Score=62.63  Aligned_cols=96  Identities=11%  Similarity=0.133  Sum_probs=59.7

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      .+++|+|+|.|.||+.+++.|...| .+|++++|+..+.....        ..+ +..........+++.+++.++|+|+
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~--------~~~-~~~~~~d~~~~~~~~~~~~~~d~vi   74 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLN--------RMG-VATKQVDAKDEAGLAKALGGFDAVI   74 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH--------TTT-CEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH--------hCC-CcEEEecCCCHHHHHHHHcCCCEEE
Confidence            4679999999999999999999999 89999998764311100        000 0001111112245778888999999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      .+.|... +     ........+.|...++++
T Consensus        75 ~~~~~~~-~-----~~~~~~~~~~g~~~~~~~  100 (118)
T 3ic5_A           75 SAAPFFL-T-----PIIAKAAKAAGAHYFDLT  100 (118)
T ss_dssp             ECSCGGG-H-----HHHHHHHHHTTCEEECCC
T ss_pred             ECCCchh-h-----HHHHHHHHHhCCCEEEec
Confidence            9987432 1     223221344566565543

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=97.96  E-value=2.2e-06  Score=80.83  Aligned_cols=110  Identities=14%  Similarity=0.093  Sum_probs=64.3

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccc---hhhhcccccccc-cccc-C-CCCCHHHHHhhC
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSS---ALAVKNGIIDDL-VDEK-G-CHEDIFEFASKA  226 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~-~-~~~~l~ell~~a  226 (269)
                      =++|+|||.|.||..+|..+...|++|+++|++............   ...+..|.+... .... . -..++ +.+++|
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a  115 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV  115 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence            468999999999999999999999999999987543111000000   000000100000 0000 0 02345 458899


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      |+|+.++|...+...-+-++... .++++++|+...-+
T Consensus       116 DlVIeaVpe~~~~k~~v~~~l~~-~~~~~~ii~snTs~  152 (463)
T 1zcj_A          116 DLVVEAVFEDMNLKKKVFAELSA-LCKPGAFLCTNTSA  152 (463)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHH-HSCTTCEEEECCSS
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHh-hCCCCeEEEeCCCC
Confidence            99999998543322222233445 78999999864433

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.94  E-value=2.3e-06  Score=70.13  Aligned_cols=100  Identities=15%  Similarity=0.149  Sum_probs=62.8

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCC---HHHH--
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED---IFEF--  222 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el--  222 (269)
                      .++.+++|+|+|+|.+|+.+|+.|+.. |++|+++++++.+... ..       ..|. ...   .+...+   +.++  
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~-~~-------~~g~-~~~---~gd~~~~~~l~~~~~  102 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQ-HR-------SEGR-NVI---SGDATDPDFWERILD  102 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHH-HH-------HTTC-CEE---ECCTTCHHHHHTBCS
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHH-HH-------HCCC-CEE---EcCCCCHHHHHhccC
Confidence            457788999999999999999999999 9999999987643211 00       0010 000   111222   3444  


Q ss_pred             HhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          223 ASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       223 l~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +.++|+|++++|..+.+..++  ..++ .+.+...+|....
T Consensus       103 ~~~ad~vi~~~~~~~~~~~~~--~~~~-~~~~~~~ii~~~~  140 (183)
T 3c85_A          103 TGHVKLVLLAMPHHQGNQTAL--EQLQ-RRNYKGQIAAIAE  140 (183)
T ss_dssp             CCCCCEEEECCSSHHHHHHHH--HHHH-HTTCCSEEEEEES
T ss_pred             CCCCCEEEEeCCChHHHHHHH--HHHH-HHCCCCEEEEEEC
Confidence            568999999998544433332  2444 5666666655443

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=97.93  E-value=2.7e-05  Score=69.80  Aligned_cols=90  Identities=20%  Similarity=0.223  Sum_probs=64.0

Q ss_pred             cCCEEEEEecCchHHHHHHHhcc-CC-CEEEEEcCCCCCccccccccchhhhccccccccccccC---CCCCHHHHHhhC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRP-FG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASKA  226 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~-~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~a  226 (269)
                      ..++++|||.|.+|+..++.+.. ++ -+|.+|||+ .......              ......+   ...++++++++|
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~--------------~l~~~~g~~~~~~~~~eav~~a  184 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILE--------------RIGRRCGVPARMAAPADIAAQA  184 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHH--------------HHHHHHTSCEEECCHHHHHHHC
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHH--------------HHHHhcCCeEEEeCHHHHHhhC
Confidence            45799999999999999998875 44 489999998 3211100              0000001   112899999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |+|+++.|.+   ..++..   + .+++|+.++.+|-
T Consensus       185 DIVi~aT~s~---~pvl~~---~-~l~~G~~V~~vGs  214 (313)
T 3hdj_A          185 DIVVTATRST---TPLFAG---Q-ALRAGAFVGAIGS  214 (313)
T ss_dssp             SEEEECCCCS---SCSSCG---G-GCCTTCEEEECCC
T ss_pred             CEEEEccCCC---CcccCH---H-HcCCCcEEEECCC
Confidence            9999998753   467764   3 6899999999873

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.92  E-value=1.3e-06  Score=76.59  Aligned_cols=86  Identities=13%  Similarity=0.079  Sum_probs=52.7

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEE-EEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~  231 (269)
                      .+|||||+|+||+.+++.|... ++| .+++++..+...                 .....+ ...+++++++++|+|++
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~-----------------~~~~~g~~~~~~~~~~~~~DvVil   64 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARN-----------------LAEVYGGKAATLEKHPELNGVVFV   64 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHH-----------------HHHHTCCCCCSSCCCCC---CEEE
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHH-----------------HHHHcCCccCCHHHHHhcCCEEEE
Confidence            3799999999999999999877 898 589986543111                 000000 22345566788999999


Q ss_pred             ecCCCccccCcCCHHHHhhhC-CCCcEEEEccCC
Q 024297          232 CLSLNKQTVKLCSSSLSSKSM-FFATYVVFMFQG  264 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~m-k~ga~lIN~~RG  264 (269)
                      ++|... .     .+.+. .+ +++.++|+++=+
T Consensus        65 av~~~~-~-----~~v~~-~l~~~~~ivi~~s~~   91 (276)
T 2i76_A           65 IVPDRY-I-----KTVAN-HLNLGDAVLVHCSGF   91 (276)
T ss_dssp             CSCTTT-H-----HHHHT-TTCCSSCCEEECCSS
T ss_pred             eCChHH-H-----HHHHH-HhccCCCEEEECCCC
Confidence            998542 1     34555 55 578899998744

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=97.92  E-value=4.6e-06  Score=65.96  Aligned_cols=87  Identities=14%  Similarity=0.218  Sum_probs=61.8

Q ss_pred             cccCCEEEEEec----CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh
Q 024297          150 TLLGKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK  225 (269)
Q Consensus       150 ~l~g~~vgIiG~----G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  225 (269)
                      -..-++|+|||.    |.+|+.+++.|...|++|+.++++...-                  ....   .+.+++++...
T Consensus        11 l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i------------------~G~~---~~~s~~el~~~   69 (138)
T 1y81_A           11 SKEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI------------------EGLK---CYRSVRELPKD   69 (138)
T ss_dssp             ---CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE------------------TTEE---CBSSGGGSCTT
T ss_pred             ccCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE------------------CCee---ecCCHHHhCCC
Confidence            345678999999    9999999999999999998888764220                  0111   34577777789


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      .|++++++| .+....++.+ ..+  ...++++++.
T Consensus        70 vDlvii~vp-~~~v~~v~~~-~~~--~g~~~i~~~~  101 (138)
T 1y81_A           70 VDVIVFVVP-PKVGLQVAKE-AVE--AGFKKLWFQP  101 (138)
T ss_dssp             CCEEEECSC-HHHHHHHHHH-HHH--TTCCEEEECT
T ss_pred             CCEEEEEeC-HHHHHHHHHH-HHH--cCCCEEEEcC
Confidence            999999999 5666666543 333  4556666665

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.90  E-value=1.2e-05  Score=73.23  Aligned_cols=98  Identities=10%  Similarity=0.074  Sum_probs=65.8

Q ss_pred             cCCEEEEEecCchHHHHHHHhc-cCC-CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLR-PFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~-~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      ..++++|||.|.+|+..++.+. ..+ .+|.+|+|+..+...-...   +.-..|.      ......+++++++++|+|
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~---~~~~~g~------~~~~~~~~~eav~~aDiV  198 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIAN---LKEYSGL------TIRRASSVAEAVKGVDII  198 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHH---HTTCTTC------EEEECSSHHHHHTTCSEE
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH---HHhccCc------eEEEeCCHHHHHhcCCEE
Confidence            4679999999999999998765 344 5899999986542111100   0000000      001236899999999999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +++.|.. ....++..   + .+++|+.++.+|-
T Consensus       199 i~aTps~-~~~pvl~~---~-~l~~G~~V~~vgs  227 (350)
T 1x7d_A          199 TTVTADK-AYATIITP---D-MLEPGMHLNAVGG  227 (350)
T ss_dssp             EECCCCS-SEEEEECG---G-GCCTTCEEEECSC
T ss_pred             EEeccCC-CCCceecH---H-HcCCCCEEEECCC
Confidence            9999865 33456654   4 7889999999873

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.88  E-value=9.4e-06  Score=74.90  Aligned_cols=105  Identities=17%  Similarity=0.228  Sum_probs=68.3

Q ss_pred             EEEEEecCchHHHHHHHhccCC--------CEEEEEcCCCCCcccc-----ccccchhhhccccccccccccCCCCCHHH
Q 024297          155 TVFILGFGNIGVELAKRLRPFG--------VKIIATKRSWASHSQV-----SCQSSALAVKNGIIDDLVDEKGCHEDIFE  221 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G--------~~V~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  221 (269)
                      ||+|||.|++|.++|..|...|        .+|..|.|..+.....     -..+.+..|..|.  .+........++.+
T Consensus        36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv--~Lp~~i~~t~dl~~  113 (391)
T 4fgw_A           36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGI--TLPDNLVANPDLID  113 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTC--CCCSSEEEESCHHH
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCC--cCCCCcEEeCCHHH
Confidence            8999999999999999997644        4699998765421110     0011122222221  11111112368999


Q ss_pred             HHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          222 FASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       222 ll~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      .++.+|+|++++| +...+.++.. ... .++++..+|+++.|
T Consensus       114 al~~ad~ii~avP-s~~~r~~l~~-l~~-~~~~~~~iv~~~KG  153 (391)
T 4fgw_A          114 SVKDVDIIVFNIP-HQFLPRICSQ-LKG-HVDSHVRAISCLKG  153 (391)
T ss_dssp             HHTTCSEEEECSC-GGGHHHHHHH-HTT-TSCTTCEEEECCCS
T ss_pred             HHhcCCEEEEECC-hhhhHHHHHH-hcc-ccCCCceeEEeccc
Confidence            9999999999999 4445554433 334 67899999999988

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=97.86  E-value=7.2e-06  Score=70.46  Aligned_cols=70  Identities=13%  Similarity=0.113  Sum_probs=55.1

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      -.+|+|||+|.||..+|+.|+..|.+|+++++.  .                                + +.+||  +++
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~--~--------------------------------~-~~~aD--ila   48 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP--E--------------------------------D-IRDFE--LVV   48 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG--G--------------------------------G-GGGCS--EEE
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH--H--------------------------------H-hccCC--EEE
Confidence            368999999999999999999999999999861  0                                1 46789  888


Q ss_pred             cCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          233 LSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       233 lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +|.. ....++ .+... .+++|+++++++
T Consensus        49 vP~~-ai~~vl-~~l~~-~l~~g~ivvd~s   75 (232)
T 3dfu_A           49 IDAH-GVEGYV-EKLSA-FARRGQMFLHTS   75 (232)
T ss_dssp             ECSS-CHHHHH-HHHHT-TCCTTCEEEECC
T ss_pred             EcHH-HHHHHH-HHHHH-hcCCCCEEEEEC
Confidence            8854 555555 33455 788999999974

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=97.86  E-value=2e-06  Score=85.37  Aligned_cols=107  Identities=14%  Similarity=0.054  Sum_probs=65.0

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcccccc---ccchhhhccccccc-----cccccCCCCCHHHHHh
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC---QSSALAVKNGIIDD-----LVDEKGCHEDIFEFAS  224 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~  224 (269)
                      =++|+|||.|.||..+|..+...|++|+++|++.........   ......+..|.+..     .........++ +.++
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~  392 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG  392 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence            357999999999999999999999999999987643111000   00000011111000     00000011344 5689


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      +||+|+.++|.+.+.+.-+-++..+ .++++++|+..
T Consensus       393 ~aDlVIeaV~e~~~vk~~v~~~l~~-~~~~~~Ilasn  428 (715)
T 1wdk_A          393 NVDLVVEAVVENPKVKQAVLAEVEN-HVREDAILASN  428 (715)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHT-TSCTTCEEEEC
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHh-hCCCCeEEEeC
Confidence            9999999999766544333344455 78999999743

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.83  E-value=1.4e-05  Score=61.62  Aligned_cols=94  Identities=19%  Similarity=0.221  Sum_probs=55.9

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCC---HHHH-HhhCCE
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED---IFEF-ASKADV  228 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDv  228 (269)
                      +++|+|+|+|.+|+.+++.|...|.+|++++++...... ...      ..|. . ..  .+...+   +.+. +.++|+
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~-~~~------~~~~-~-~~--~~d~~~~~~l~~~~~~~~d~   72 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKK-ASA------EIDA-L-VI--NGDCTKIKTLEDAGIEDADM   72 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHH------HCSS-E-EE--ESCTTSHHHHHHTTTTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHH-HHH------hcCc-E-EE--EcCCCCHHHHHHcCcccCCE
Confidence            478999999999999999999999999999986543110 000      0010 0 00  011222   2222 568999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEE
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVF  260 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN  260 (269)
                      |++++|....+.  .-....+ .++++.+++-
T Consensus        73 vi~~~~~~~~~~--~~~~~~~-~~~~~~ii~~  101 (140)
T 1lss_A           73 YIAVTGKEEVNL--MSSLLAK-SYGINKTIAR  101 (140)
T ss_dssp             EEECCSCHHHHH--HHHHHHH-HTTCCCEEEE
T ss_pred             EEEeeCCchHHH--HHHHHHH-HcCCCEEEEE
Confidence            999988532221  1122444 6777765553

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.82  E-value=3.9e-06  Score=74.16  Aligned_cols=100  Identities=20%  Similarity=0.198  Sum_probs=66.0

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHh
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS  224 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~  224 (269)
                      +.++.++++.|+|.|.+|++++..|...|+ +|++++|+.++......              .....+  ...+++++..
T Consensus       121 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~--------------~~~~~~~~~~~~~~~l~~  186 (281)
T 3o8q_A          121 QVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAE--------------LVAAYGEVKAQAFEQLKQ  186 (281)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHH--------------HHGGGSCEEEEEGGGCCS
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHH--------------HhhccCCeeEeeHHHhcC
Confidence            356899999999999999999999999997 99999998654211100              000000  0112333337


Q ss_pred             hCCEEEEecCCCcccc-CcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          225 KADVVVCCLSLNKQTV-KLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~-~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      ++|+||++.|...... ..++.   + .++++++++++.-.+
T Consensus       187 ~aDiIInaTp~gm~~~~~~l~~---~-~l~~~~~V~DlvY~P  224 (281)
T 3o8q_A          187 SYDVIINSTSASLDGELPAIDP---V-IFSSRSVCYDMMYGK  224 (281)
T ss_dssp             CEEEEEECSCCCC----CSCCG---G-GEEEEEEEEESCCCS
T ss_pred             CCCEEEEcCcCCCCCCCCCCCH---H-HhCcCCEEEEecCCC
Confidence            8999999998764321 23443   4 577899999886544

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.81  E-value=4.9e-06  Score=74.95  Aligned_cols=104  Identities=20%  Similarity=0.194  Sum_probs=64.5

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      .++|+|||.|.||..+|..|...|.+|++++|. +. ...... .+..+.... ...........+.++ +..+|+|+++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~-~~~~~~-~g~~~~~~~-~~~~~~~~~~~~~~~-~~~~D~Vila   77 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-AT-LQALQT-AGLRLTEDG-ATHTLPVRATHDAAA-LGEQDVVIVA   77 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HH-HHHHHH-TCEEEEETT-EEEEECCEEESCHHH-HCCCSEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HH-HHHHHH-CCCEEecCC-CeEEEeeeEECCHHH-cCCCCEEEEe
Confidence            368999999999999999999999999999984 21 111100 000000000 000000001246666 5899999999


Q ss_pred             cCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          233 LSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       233 lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +|. .++...+.. ... .+++++++|.+.-|
T Consensus        78 vk~-~~~~~~~~~-l~~-~l~~~~~iv~~~nG  106 (335)
T 3ghy_A           78 VKA-PALESVAAG-IAP-LIGPGTCVVVAMNG  106 (335)
T ss_dssp             CCH-HHHHHHHGG-GSS-SCCTTCEEEECCSS
T ss_pred             CCc-hhHHHHHHH-HHh-hCCCCCEEEEECCC
Confidence            994 455544422 333 57789999998877

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=97.81  E-value=0.00019  Score=63.83  Aligned_cols=135  Identities=16%  Similarity=0.042  Sum_probs=96.7

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec-CchHHHHHHHh
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF-GNIGVELAKRL  172 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~-G~iG~~~a~~l  172 (269)
                      .+...+|+|.|..+.   +..++  .+|+-++.+.+.+                 ..+.|.+|+++|= +++.+.++..+
T Consensus       117 la~~~~vPVINa~~~---~~HPt--QaLaDl~Ti~e~~-----------------g~l~gl~ia~vGD~~rva~Sl~~~~  174 (301)
T 2ef0_A          117 LARHAKVPVVNALSD---RAHPL--QALADLLTLKEVF-----------------GGLAGLEVAWVGDGNNVLNSLLEVA  174 (301)
T ss_dssp             HHHHCSSCEEEEECS---SCCHH--HHHHHHHHHHHHH-----------------SCCTTCEEEEESCCCHHHHHHHHHH
T ss_pred             HHHHCCCCEEeCCCC---ccCch--HHHHHHHHHHHHh-----------------CCcCCcEEEEECCCchhHHHHHHHH
Confidence            344567999997654   55677  6777777776653                 3589999999996 89999999999


Q ss_pred             ccCCCEEEEEcCCCCCccccccccchhhhccccccccccc--cCCCCCHHHHHhhCCEEEEecCCC------cc------
Q 024297          173 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE--KGCHEDIFEFASKADVVVCCLSLN------KQ------  238 (269)
Q Consensus       173 ~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~aDvvv~~lp~t------~~------  238 (269)
                      ..+|++|.++.+..-....                +....  .....+++++++++|||....=-.      +.      
T Consensus       175 ~~~g~~v~~~~P~~~~~~~----------------~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~~~~~~~~~~  238 (301)
T 2ef0_A          175 PLAGLKVRVATPKGYEPDP----------------GLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAEREKRLRDF  238 (301)
T ss_dssp             HHHTCEEEEECCTTCCCCH----------------HHHHHHTCEEESCHHHHHTTCSEEEECCCC--------CHHHHHT
T ss_pred             HHcCCEEEEECCchhcCCH----------------HHHhhceeEEECCHHHHhcCCCEEEecCcccCCcccchhHHHHHh
Confidence            9999999999875432110                11111  112478999999999999854200      11      


Q ss_pred             ccCcCCHHHHhhhCCCCcEEEEcc---CCCCc
Q 024297          239 TVKLCSSSLSSKSMFFATYVVFMF---QGHGV  267 (269)
Q Consensus       239 t~~li~~~~l~~~mk~ga~lIN~~---RG~~v  267 (269)
                      ...-+|.+.++ .+|++++|.-+.   ||.=|
T Consensus       239 ~~y~v~~e~l~-~a~~~ai~mHplP~~Rg~EI  269 (301)
T 2ef0_A          239 QGFQVNGELLK-LLRPEGVFLHCLPAHYGEET  269 (301)
T ss_dssp             TTCCBCHHHHT-TSCTTCEEEECSCCCBTTTB
T ss_pred             hccccCHHHHH-hcCCCcEEECCCCCCCCCcc
Confidence            23677999999 999999999887   66543

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.81  E-value=1.1e-05  Score=70.69  Aligned_cols=101  Identities=16%  Similarity=0.155  Sum_probs=64.4

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH-hhCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-SKAD  227 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aD  227 (269)
                      .++.+++++|+|.|.+|+++++.|...|.+|++++|+.++.......   +.. .+    ..    ...+++++. .++|
T Consensus       115 ~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~---~~~-~~----~~----~~~~~~~~~~~~~D  182 (271)
T 1nyt_A          115 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKL---FAH-TG----SI----QALSMDELEGHEFD  182 (271)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHH---TGG-GS----SE----EECCSGGGTTCCCS
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH---hhc-cC----Ce----eEecHHHhccCCCC
Confidence            45789999999999999999999999999999999876442111000   000 00    00    001122222 5899


Q ss_pred             EEEEecCCCcccc-CcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          228 VVVCCLSLNKQTV-KLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       228 vvv~~lp~t~~t~-~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +||++.|...... .-+..   . .++++.+++++.-.+
T Consensus       183 ivVn~t~~~~~~~~~~i~~---~-~l~~~~~v~D~~y~p  217 (271)
T 1nyt_A          183 LIINATSSGISGDIPAIPS---S-LIHPGIYCYDMFYQK  217 (271)
T ss_dssp             EEEECCSCGGGTCCCCCCG---G-GCCTTCEEEESCCCS
T ss_pred             EEEECCCCCCCCCCCCCCH---H-HcCCCCEEEEeccCC
Confidence            9999998654310 11332   3 568899999987654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.80  E-value=7.4e-06  Score=64.34  Aligned_cols=94  Identities=10%  Similarity=0.161  Sum_probs=57.8

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCC---HHHH-HhhCCE
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED---IFEF-ASKADV  228 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDv  228 (269)
                      ..+|.|+|+|.+|+.+|+.|...|++|+++++++........        .|. ..   -.+...+   +.++ +.++|+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~--------~g~-~~---i~gd~~~~~~l~~a~i~~ad~   74 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE--------RGV-RA---VLGNAANEEIMQLAHLECAKW   74 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--------TTC-EE---EESCTTSHHHHHHTTGGGCSE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------cCC-CE---EECCCCCHHHHHhcCcccCCE
Confidence            347889999999999999999999999999987654211000        010 00   0111122   3332 568999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      |++++|....+..++  ..++ .+.++..+|-.
T Consensus        75 vi~~~~~~~~n~~~~--~~a~-~~~~~~~iiar  104 (140)
T 3fwz_A           75 LILTIPNGYEAGEIV--ASAR-AKNPDIEIIAR  104 (140)
T ss_dssp             EEECCSCHHHHHHHH--HHHH-HHCSSSEEEEE
T ss_pred             EEEECCChHHHHHHH--HHHH-HHCCCCeEEEE
Confidence            999998655443332  2344 55556555543

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.80  E-value=6.4e-06  Score=63.85  Aligned_cols=37  Identities=22%  Similarity=0.439  Sum_probs=32.3

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      +.+++|+|+|+|.+|+.+++.|...|++|++++++..
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~   40 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   40 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5678899999999999999999999999999998653

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.79  E-value=4e-06  Score=74.22  Aligned_cols=103  Identities=14%  Similarity=0.142  Sum_probs=60.2

Q ss_pred             CEEEEEecCchHHHHHHHhccC-----C-CEEEEEcCCCCCccccccccchhhhc--cccccccccccCCCCCHHHHHhh
Q 024297          154 KTVFILGFGNIGVELAKRLRPF-----G-VKIIATKRSWASHSQVSCQSSALAVK--NGIIDDLVDEKGCHEDIFEFASK  225 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~-----G-~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~ell~~  225 (269)
                      ++|+|||.|.||..+|..|...     | .+|++++| ... ........+..+.  .|.  ..........+. +.+..
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~-~~~l~~~~g~~~~~~~~~--~~~~~~~~~~~~-~~~~~   83 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAH-LEAIRAAGGLRVVTPSRD--FLARPTCVTDNP-AEVGT   83 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHH-HHHHHHHTSEEEECSSCE--EEECCSEEESCH-HHHCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHH-HHHHHhcCCeEEEeCCCC--eEEecceEecCc-cccCC
Confidence            4899999999999999999988     9 99999998 322 1111000000000  000  000000001233 45789


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +|+|++++|.. ++...+. +... .+++++++|.+.=|
T Consensus        84 ~D~vil~vk~~-~~~~v~~-~i~~-~l~~~~~iv~~~nG  119 (317)
T 2qyt_A           84 VDYILFCTKDY-DMERGVA-EIRP-MIGQNTKILPLLNG  119 (317)
T ss_dssp             EEEEEECCSSS-CHHHHHH-HHGG-GEEEEEEEEECSCS
T ss_pred             CCEEEEecCcc-cHHHHHH-HHHh-hcCCCCEEEEccCC
Confidence            99999999954 4444432 2333 56778888887655

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=97.79  E-value=0.00034  Score=62.39  Aligned_cols=136  Identities=17%  Similarity=0.115  Sum_probs=93.8

Q ss_pred             HhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecC--chHHHHHHHh
Q 024297           95 ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG--NIGVELAKRL  172 (269)
Q Consensus        95 ~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G--~iG~~~a~~l  172 (269)
                      +...+|+|.|..+.   +..++  .+|+-++.+.+++                 ..+.|.+|+++|=|  ++.+.++..+
T Consensus       112 A~~~~vPVINa~~~---~~HPt--QaLaDl~Ti~e~~-----------------g~l~gl~va~vGD~~~rva~Sl~~~~  169 (307)
T 2i6u_A          112 ASVATVPVINALSD---EFHPC--QVLADLQTIAERK-----------------GALRGLRLSYFGDGANNMAHSLLLGG  169 (307)
T ss_dssp             HHHCSSCEEESCCS---SCCHH--HHHHHHHHHHHHH-----------------SCCTTCEEEEESCTTSHHHHHHHHHH
T ss_pred             HhhCCCCEEcCCCC---CcCcc--HHHHHHHHHHHHh-----------------CCcCCeEEEEECCCCcCcHHHHHHHH
Confidence            44567999997653   55677  6777777776653                 35899999999975  9999999999


Q ss_pred             ccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHHhhCCEEEEecCC-------Ccc---
Q 024297          173 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKADVVVCCLSL-------NKQ---  238 (269)
Q Consensus       173 ~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aDvvv~~lp~-------t~~---  238 (269)
                      ..+|++|.++.+..-.......   ...      .+.....+    ...+++++++++|||....=.       .++   
T Consensus       170 ~~~g~~v~~~~P~~~~~~~~~~---~~~------~~~a~~~G~~~~~~~d~~eav~~aDvvy~~~w~smg~~~~~~~~~~  240 (307)
T 2i6u_A          170 VTAGIHVTVAAPEGFLPDPSVR---AAA------ERRAQDTGASVTVTADAHAAAAGADVLVTDTWTSMGQENDGLDRVK  240 (307)
T ss_dssp             HHTTCEEEEECCTTSCCCHHHH---HHH------HHHHHHHTCCEEEESCHHHHHTTCSEEEECCSSCTTCTTSCCCSSG
T ss_pred             HHCCCEEEEECCccccCCHHHH---HHH------HHHHHHcCCeEEEEECHHHHhcCCCEEEecceecCCcccchHHHHH
Confidence            9999999999875432111000   000      00000111    247899999999999985420       111   


Q ss_pred             --ccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          239 --TVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       239 --t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                        ...-+|.+.++ .+|++++|.-+.
T Consensus       241 ~~~~y~v~~~~l~-~a~~~ai~mH~l  265 (307)
T 2i6u_A          241 PFRPFQLNSRLLA-LADSDAIVLHCL  265 (307)
T ss_dssp             GGGGGCBCHHHHH-HSCTTCEEEECS
T ss_pred             HHhhcCCCHHHHh-hcCCCcEEECCC
Confidence              23567999999 999999999876

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.79  E-value=2.7e-05  Score=69.85  Aligned_cols=114  Identities=13%  Similarity=0.086  Sum_probs=68.2

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.|+++.|+|.|.+|++++..|...|+ +|++++|+.+........-..+.-..+. .-....+...+++.+.+.++
T Consensus       149 ~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~-~~~~~~~~~~~~l~~~l~~a  227 (315)
T 3tnl_A          149 GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDC-KAQLFDIEDHEQLRKEIAES  227 (315)
T ss_dssp             TCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSC-EEEEEETTCHHHHHHHHHTC
T ss_pred             CCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCC-ceEEeccchHHHHHhhhcCC
Confidence            356899999999999999999999999999 8999999832111100000000000000 00000000112366778899


Q ss_pred             CEEEEecCCCcc--c-cCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          227 DVVVCCLSLNKQ--T-VKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       227 Dvvv~~lp~t~~--t-~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      |+||++.|..-.  + ...+.  ... .++++.+++++.-.+
T Consensus       228 DiIINaTp~Gm~~~~~~~p~~--~~~-~l~~~~~V~DlvY~P  266 (315)
T 3tnl_A          228 VIFTNATGVGMKPFEGETLLP--SAD-MLRPELIVSDVVYKP  266 (315)
T ss_dssp             SEEEECSSTTSTTSTTCCSCC--CGG-GCCTTCEEEESCCSS
T ss_pred             CEEEECccCCCCCCCCCCCCC--cHH-HcCCCCEEEEeccCC
Confidence            999999985422  1 11221  234 678899998886544

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.78  E-value=1.6e-05  Score=70.24  Aligned_cols=94  Identities=14%  Similarity=0.133  Sum_probs=64.9

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhcccccccccccc--CCCCCHHHHHhh
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--GCHEDIFEFASK  225 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~ell~~  225 (269)
                      .++.++++.|+|.|.+|++++..|...|+ +|++++|+.++..                 .+....  ...+++.+ + +
T Consensus       118 ~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~-----------------~La~~~~~~~~~~l~~-l-~  178 (282)
T 3fbt_A          118 VEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTS-----------------EIYGEFKVISYDELSN-L-K  178 (282)
T ss_dssp             CCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHH-----------------HHCTTSEEEEHHHHTT-C-C
T ss_pred             CCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-----------------HHHHhcCcccHHHHHh-c-c
Confidence            56889999999999999999999999999 9999999865421                 111111  01123334 4 8


Q ss_pred             CCEEEEecCCC--cccc-CcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          226 ADVVVCCLSLN--KQTV-KLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       226 aDvvv~~lp~t--~~t~-~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +|+||++.|.-  +... -.++.+    .++++.+++++.-.+
T Consensus       179 ~DivInaTp~Gm~~~~~~~pi~~~----~l~~~~~v~DlvY~P  217 (282)
T 3fbt_A          179 GDVIINCTPKGMYPKEGESPVDKE----VVAKFSSAVDLIYNP  217 (282)
T ss_dssp             CSEEEECSSTTSTTSTTCCSSCHH----HHTTCSEEEESCCSS
T ss_pred             CCEEEECCccCccCCCccCCCCHH----HcCCCCEEEEEeeCC
Confidence            99999999863  2211 124543    456788888886443

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=97.77  E-value=1.5e-05  Score=68.23  Aligned_cols=79  Identities=22%  Similarity=0.195  Sum_probs=57.3

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEE-EEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH-hhCCEEEEe
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-SKADVVVCC  232 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDvvv~~  232 (269)
                      +|||||+|.||+.+++.+..-|++| .++|++...                  ..      ...++++++ .++|+|+++
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~~------------------~~------~~~~~~~l~~~~~DvVv~~   57 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEH------------------EK------MVRGIDEFLQREMDVAVEA   57 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCCC------------------TT------EESSHHHHTTSCCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcch------------------hh------hcCCHHHHhcCCCCEEEEC
Confidence            7999999999999999988889997 688876321                  01      235788888 699999999


Q ss_pred             cCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          233 LSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       233 lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +|.... .    +-... .++.|..+|..+-
T Consensus        58 ~~~~~~-~----~~~~~-~l~~G~~vv~~~~   82 (236)
T 2dc1_A           58 ASQQAV-K----DYAEK-ILKAGIDLIVLST   82 (236)
T ss_dssp             SCHHHH-H----HHHHH-HHHTTCEEEESCG
T ss_pred             CCHHHH-H----HHHHH-HHHCCCcEEEECc
Confidence            983311 1    11234 6778887777653

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.77  E-value=2.2e-05  Score=68.96  Aligned_cols=102  Identities=18%  Similarity=0.146  Sum_probs=66.1

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.|+++.|+|.|.+|++++..|...|+ +|++++|+.++.......   +  ..+.    . .....+++.+  .++
T Consensus       115 ~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~---~--~~~~----~-~~~~~~~l~~--~~~  182 (272)
T 3pwz_A          115 GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNE---L--DHSR----L-RISRYEALEG--QSF  182 (272)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHH---H--CCTT----E-EEECSGGGTT--CCC
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH---h--ccCC----e-eEeeHHHhcc--cCC
Confidence            456899999999999999999999999996 999999986542111000   0  0000    0 0001223322  789


Q ss_pred             CEEEEecCCCcccc-CcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          227 DVVVCCLSLNKQTV-KLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       227 Dvvv~~lp~t~~t~-~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      |+||++.|...... ..+..   + .++++++++++.-.+
T Consensus       183 DivInaTp~gm~~~~~~i~~---~-~l~~~~~V~DlvY~P  218 (272)
T 3pwz_A          183 DIVVNATSASLTADLPPLPA---D-VLGEAALAYELAYGK  218 (272)
T ss_dssp             SEEEECSSGGGGTCCCCCCG---G-GGTTCSEEEESSCSC
T ss_pred             CEEEECCCCCCCCCCCCCCH---H-HhCcCCEEEEeecCC
Confidence            99999998643211 23443   4 577899999886543

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.76  E-value=7.2e-06  Score=73.39  Aligned_cols=107  Identities=17%  Similarity=0.187  Sum_probs=61.9

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      ....++|+|||.|.||..+|..|...|.+|+++ ++.+..............+.+.   .........++++ +..+|+|
T Consensus        16 ~~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~---~~~~~~~~~~~~~-~~~~D~v   90 (318)
T 3hwr_A           16 YFQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFD---EQVKVSASSDPSA-VQGADLV   90 (318)
T ss_dssp             ----CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCE---EEECCEEESCGGG-GTTCSEE
T ss_pred             hccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCc---EEEeeeeeCCHHH-cCCCCEE
Confidence            345679999999999999999999999999999 5432211000000000000000   0000001134443 5899999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      ++++|.. +++..+.. ... .+++++++|++.-|
T Consensus        91 ilavk~~-~~~~~l~~-l~~-~l~~~~~iv~~~nG  122 (318)
T 3hwr_A           91 LFCVKST-DTQSAALA-MKP-ALAKSALVLSLQNG  122 (318)
T ss_dssp             EECCCGG-GHHHHHHH-HTT-TSCTTCEEEEECSS
T ss_pred             EEEcccc-cHHHHHHH-HHH-hcCCCCEEEEeCCC
Confidence            9999954 55554422 334 67889999987665

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=97.76  E-value=0.00022  Score=63.34  Aligned_cols=133  Identities=16%  Similarity=0.164  Sum_probs=94.0

Q ss_pred             hHhcCCcEEEec-CCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec---CchHHHHH
Q 024297           94 AATRCGIKVARI-PGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF---GNIGVELA  169 (269)
Q Consensus        94 ~~~~~gI~v~n~-~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~---G~iG~~~a  169 (269)
                      .+...+|+|.|. -|.   +..++  .+|+-++.+.+++                 ..+.|.+|+++|=   |++.+.++
T Consensus       111 la~~~~vPVINaG~g~---~~HPt--Q~LaDl~Ti~e~~-----------------g~l~gl~va~vGD~~~~rva~Sl~  168 (299)
T 1pg5_A          111 ASEISDIPVINAGDGK---HEHPT--QAVIDIYTINKHF-----------------NTIDGLVFALLGDLKYARTVNSLL  168 (299)
T ss_dssp             HHHHCSSCEEEEEETT---TBCHH--HHHHHHHHHHHHH-----------------SCSTTCEEEEEECCSSCHHHHHHH
T ss_pred             HHHhCCCCEEeCCCCC---CcCcH--HHHHHHHHHHHHh-----------------CCcCCcEEEEECCCCCCchHHHHH
Confidence            345567999998 333   44666  6677777776653                 3589999999996   69999999


Q ss_pred             HHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHHhhCCEEEEecCCCcc------
Q 024297          170 KRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKADVVVCCLSLNKQ------  238 (269)
Q Consensus       170 ~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aDvvv~~lp~t~~------  238 (269)
                      ..+..+ |++|.++.+..-....                ......+    ...+++++++++|||....=-.+.      
T Consensus       169 ~~~~~~~g~~v~~~~P~~~~~~~----------------~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~er~~~~~~  232 (299)
T 1pg5_A          169 RILTRFRPKLVYLISPQLLRARK----------------EILDELNYPVKEVENPFEVINEVDVLYVTRIQKERFVDEME  232 (299)
T ss_dssp             HHGGGSCCSEEEEECCGGGCCCH----------------HHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTTSSCHHH
T ss_pred             HHHHhCCCCEEEEECCchhcCCH----------------HHHHHcCCeEEEeCCHHHHhcCCCEEEeCCcccccccCHHH
Confidence            999999 9999999864322100                0011111    236789999999999887543211      


Q ss_pred             -----ccCcCCHHHHhhhCCCCcEEEEcc-CCC
Q 024297          239 -----TVKLCSSSLSSKSMFFATYVVFMF-QGH  265 (269)
Q Consensus       239 -----t~~li~~~~l~~~mk~ga~lIN~~-RG~  265 (269)
                           ...-+|.+.++ .+|++++|.-+. ||.
T Consensus       233 ~~~~~~~y~v~~~~l~-~a~~~ai~mH~lPrg~  264 (299)
T 1pg5_A          233 YEKIKGSYIVSLDLAN-KMKKDSIILHPLPRVN  264 (299)
T ss_dssp             HHHHGGGGSBCHHHHH-TSCTTCEEECCSCCSS
T ss_pred             HHHhhcCcccCHHHHH-hcCCCCEEECCCCCCC
Confidence                 03677999999 999999998776 544

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.76  E-value=1.4e-05  Score=73.67  Aligned_cols=104  Identities=16%  Similarity=0.097  Sum_probs=61.2

Q ss_pred             CEEEEEecCchHHHHHHHhcc-CCCEEEEEc---CCCCCccccccccchhh----hccccccccccccC-CCCCHHHHHh
Q 024297          154 KTVFILGFGNIGVELAKRLRP-FGVKIIATK---RSWASHSQVSCQSSALA----VKNGIIDDLVDEKG-CHEDIFEFAS  224 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~-~G~~V~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~l~ell~  224 (269)
                      ++|+|||.|.||..+|..|.. .|.+|++++   ++.......... -.+.    .+.+.......... ...+++++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   81 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGA-DELTVIVNEKDGTQTEVKSRPKVITKDPEIAIS   81 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTT-SCEEEEEECSSSCEEEEEECCSEEESCHHHHHT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhh-ccceeeeecCCCccceeeccceEEeCCHHHHhC
Confidence            489999999999999999987 599999999   432211000000 0000    00010000000111 1257888899


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      .+|+|++++|.. ..+.++ ++... .+++++++|+.
T Consensus        82 ~aD~Vilav~~~-~~~~v~-~~l~~-~l~~~~ivv~~  115 (404)
T 3c7a_A           82 GADVVILTVPAF-AHEGYF-QAMAP-YVQDSALIVGL  115 (404)
T ss_dssp             TCSEEEECSCGG-GHHHHH-HHHTT-TCCTTCEEEET
T ss_pred             CCCEEEEeCchH-HHHHHH-HHHHh-hCCCCcEEEEc
Confidence            999999999943 344433 22333 57788888874

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.74  E-value=2.9e-05  Score=69.39  Aligned_cols=102  Identities=17%  Similarity=0.219  Sum_probs=63.8

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhh---ccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV---KNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      ++|+|||.|.||..+|..|...|.+|++++|+..   ..... .++.+   ..|...  ........+.+++.+.+|+|+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~---~~i~~-~Gl~~~~~~~g~~~--~~~~~~~~~~~~~~~~~DlVi   76 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY---ETVKA-KGIRIRSATLGDYT--FRPAAVVRSAAELETKPDCTL   76 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH---HHHHH-HCEEEEETTTCCEE--ECCSCEESCGGGCSSCCSEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH---HHHHh-CCcEEeecCCCcEE--EeeeeeECCHHHcCCCCCEEE
Confidence            5899999999999999999999999999998642   11100 00000   001000  000001235556556899999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +++|.. ++...+.. ... .+++++.+|.+.-|
T Consensus        77 lavK~~-~~~~~l~~-l~~-~l~~~t~Iv~~~nG  107 (320)
T 3i83_A           77 LCIKVV-EGADRVGL-LRD-AVAPDTGIVLISNG  107 (320)
T ss_dssp             ECCCCC-TTCCHHHH-HTT-SCCTTCEEEEECSS
T ss_pred             EecCCC-ChHHHHHH-HHh-hcCCCCEEEEeCCC
Confidence            999954 44444322 334 67888888887665

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.74  E-value=4e-05  Score=68.85  Aligned_cols=92  Identities=12%  Similarity=0.024  Sum_probs=63.5

Q ss_pred             cCCEEEEEecCchHHHHHHHhcc-CC-CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRP-FG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~-~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      ..++++|||.|.+|+..++.+.. .+ -+|.+++|+.++...-...   +  ..    ... ... ..++++++ ++|+|
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~---~--~~----~~~-~~~-~~~~~e~v-~aDvV  191 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSY---C--ED----RGI-SAS-VQPAEEAS-RCDVL  191 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHH---H--HH----TTC-CEE-ECCHHHHT-SSSEE
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHH---H--Hh----cCc-eEE-ECCHHHHh-CCCEE
Confidence            46799999999999999998876 44 5899999986542111000   0  00    000 011 46788999 99999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +++.|..   ..++..   . .+++|+.++.+|
T Consensus       192 i~aTp~~---~pv~~~---~-~l~~G~~V~~ig  217 (322)
T 1omo_A          192 VTTTPSR---KPVVKA---E-WVEEGTHINAIG  217 (322)
T ss_dssp             EECCCCS---SCCBCG---G-GCCTTCEEEECS
T ss_pred             EEeeCCC---CceecH---H-HcCCCeEEEECC
Confidence            9998843   366653   4 688999999885

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=97.73  E-value=0.00026  Score=63.91  Aligned_cols=142  Identities=13%  Similarity=0.089  Sum_probs=95.5

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEe-cCchHHHHHHHh
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILG-FGNIGVELAKRL  172 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG-~G~iG~~~a~~l  172 (269)
                      .+...+|+|.|..+.   +..++  .+|+-++.+.+.+                 ..+.|.||+++| .+++.+.++..+
T Consensus       142 lA~~~~vPVINag~~---~~HPt--QaLaDl~TI~E~~-----------------G~l~glkva~vGD~~nva~Sl~~~~  199 (340)
T 4ep1_A          142 LAKESSIPVINGLTD---DHHPC--QALADLMTIYEET-----------------NTFKGIKLAYVGDGNNVCHSLLLAS  199 (340)
T ss_dssp             HHHHCSSCEEEEECS---SCCHH--HHHHHHHHHHHHH-----------------SCCTTCEEEEESCCCHHHHHHHHHH
T ss_pred             HHHhCCCCEEeCCCC---CCCcH--HHHHHHHHHHHHh-----------------CCCCCCEEEEECCCchhHHHHHHHH
Confidence            345678999998653   45666  6677777776653                 348999999999 578899999999


Q ss_pred             ccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHHhhCCEEEEecCCCc------c----
Q 024297          173 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKADVVVCCLSLNK------Q----  238 (269)
Q Consensus       173 ~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aDvvv~~lp~t~------~----  238 (269)
                      ..+|++|.++.+..-........   ..      .......+    ...+++++++++|||....=-..      +    
T Consensus       200 ~~~G~~v~~~~P~~~~~~~~~~~---~~------~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~w~smg~e~~~~~~~~  270 (340)
T 4ep1_A          200 AKVGMHMTVATPVGYRPNEEIVK---KA------LAIAKETGAEIEILHNPELAVNEADFIYTDVWMSMGQEGEEEKYTL  270 (340)
T ss_dssp             HHHTCEEEEECCTTCCCCHHHHH---HH------HHHHHHHCCCEEEESCHHHHHTTCSEEEECCC------CHHHHHHH
T ss_pred             HHcCCEEEEECCcccCCCHHHHH---HH------HHHHHHcCCeEEEECCHHHHhCCCCEEEecCccCCCCCchHHHHHH
Confidence            99999999998754321110000   00      00000111    23689999999999988642110      0    


Q ss_pred             -ccCcCCHHHHhhhCCCCcEEEEcc---CCCCc
Q 024297          239 -TVKLCSSSLSSKSMFFATYVVFMF---QGHGV  267 (269)
Q Consensus       239 -t~~li~~~~l~~~mk~ga~lIN~~---RG~~v  267 (269)
                       ...-++.+.++ .+|++++|.-+.   ||.=|
T Consensus       271 ~~~y~vt~ell~-~ak~dai~MHcLPa~Rg~EI  302 (340)
T 4ep1_A          271 FQPYQINKELVK-HAKQTYHFLHCLPAHREEEV  302 (340)
T ss_dssp             HGGGCBCHHHHT-TSCTTCEEEECSCCCBTTTB
T ss_pred             hccccCCHHHHH-hcCCCcEEECCCCCCCCcee
Confidence             13568999999 999999999887   77543

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=97.70  E-value=6.7e-06  Score=81.70  Aligned_cols=106  Identities=16%  Similarity=0.037  Sum_probs=63.9

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcccccc---ccchhhhccccccc-----cccccCCCCCHHHHHhh
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC---QSSALAVKNGIIDD-----LVDEKGCHEDIFEFASK  225 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~~  225 (269)
                      ++|+|||.|.||..+|..+...|++|+++|++.........   ......+..|.+..     .........++ +.+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  391 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD  391 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence            67999999999999999999999999999987643111000   00000011111000     00000011344 46899


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      ||+|+.++|.+.+.+.-+-++..+ .++++++|+..
T Consensus       392 aDlVIeaVpe~~~vk~~v~~~l~~-~~~~~~Ilasn  426 (725)
T 2wtb_A          392 VDMVIEAVIENISLKQQIFADLEK-YCPQHCILASN  426 (725)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHH-HSCTTCEEEEC
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHh-hCCCCcEEEeC
Confidence            999999999765443323344555 79999988643

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.70  E-value=8.5e-05  Score=69.44  Aligned_cols=103  Identities=16%  Similarity=0.153  Sum_probs=73.0

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCC---EEEEEc----CC--CCCcccc--ccccchhhhccccccccccccC--
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV---KIIATK----RS--WASHSQV--SCQSSALAVKNGIIDDLVDEKG--  214 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~---~V~~~~----~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--  214 (269)
                      +..+.++++.|+|.|..|+++++.|...|+   +|+++|    |+  ..+....  ...   +.      ........  
T Consensus       181 g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~---~~------~~~a~~~~~~  251 (439)
T 2dvm_A          181 GKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFP---YR------GWLLKKTNGE  251 (439)
T ss_dssp             TCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHST---TC------HHHHTTSCTT
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHH---HH------HHHhhccccc
Confidence            457889999999999999999999999998   799999    87  2221000  000   00      00001011  


Q ss_pred             -CCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          215 -CHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       215 -~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                       ...++.+.++++|+||.+.|..+   ++++++.++ .|+++.+++.++.
T Consensus       252 ~~~~~L~e~l~~aDVlInaT~~~~---G~~~~e~v~-~m~~~~iVfDLyn  297 (439)
T 2dvm_A          252 NIEGGPQEALKDADVLISFTRPGP---GVIKPQWIE-KMNEDAIVFPLAN  297 (439)
T ss_dssp             CCCSSHHHHHTTCSEEEECSCCCS---SSSCHHHHT-TSCTTCEEEECCS
T ss_pred             cccccHHHHhccCCEEEEcCCCcc---CCCChHHHH-hcCCCCEEEECCC
Confidence             23578999999999999977432   567777888 9999999998853

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=97.69  E-value=0.00016  Score=64.52  Aligned_cols=140  Identities=12%  Similarity=0.049  Sum_probs=92.7

Q ss_pred             hHhcCCcEEEecCC-CCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec---CchHHHHH
Q 024297           94 AATRCGIKVARIPG-DVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF---GNIGVELA  169 (269)
Q Consensus        94 ~~~~~gI~v~n~~~-~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~---G~iG~~~a  169 (269)
                      .+...+|+|.|..+ .   +..++  .+|+-++.+.+++                 ..+.|.+|+++|=   |++.+.++
T Consensus       117 la~~~~vPVINag~g~---~~HPt--Q~LaDl~Ti~e~~-----------------g~l~gl~va~vGD~~~~rva~Sl~  174 (308)
T 1ml4_A          117 AAEVAEVPVINAGDGS---NQHPT--QTLLDLYTIKKEF-----------------GRIDGLKIGLLGDLKYGRTVHSLA  174 (308)
T ss_dssp             HHHTCSSCEEEEEETT---SCCHH--HHHHHHHHHHHHS-----------------SCSSSEEEEEESCTTTCHHHHHHH
T ss_pred             HHHhCCCCEEeCccCC---ccCcH--HHHHHHHHHHHHh-----------------CCCCCeEEEEeCCCCcCchHHHHH
Confidence            34556799999754 3   34666  6666666666542                 3589999999997   58999999


Q ss_pred             HHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCC------cc-----
Q 024297          170 KRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLN------KQ-----  238 (269)
Q Consensus       170 ~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t------~~-----  238 (269)
                      ..+..+|++|.++.+..-......   ....-.+|      .......+++++++++|||....=-.      ++     
T Consensus       175 ~~~~~~G~~v~~~~P~~~~~~~~~---~~~~~~~g------~~~~~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~  245 (308)
T 1ml4_A          175 EALTFYDVELYLISPELLRMPRHI---VEELREKG------MKVVETTTLEDVIGKLDVLYVTRIQKERFPDEQEYLKVK  245 (308)
T ss_dssp             HHGGGSCEEEEEECCGGGCCCHHH---HHHHHHTT------CCEEEESCTHHHHTTCSEEEECCCCGGGSSSHHHHHTTT
T ss_pred             HHHHHCCCEEEEECCccccCCHHH---HHHHHHcC------CeEEEEcCHHHHhcCCCEEEECCccccccCCHHHHHHHh
Confidence            999999999999986432211000   00000011      00012368899999999998865211      11     


Q ss_pred             ccCcCCHHHHhhhCCCCcEEEEcc-CCC
Q 024297          239 TVKLCSSSLSSKSMFFATYVVFMF-QGH  265 (269)
Q Consensus       239 t~~li~~~~l~~~mk~ga~lIN~~-RG~  265 (269)
                      ...-+|.+.++ .+|++++|.-+. ||.
T Consensus       246 ~~y~v~~~ll~-~a~~~ai~mH~lPrg~  272 (308)
T 1ml4_A          246 GSYQVNLKVLE-KAKDELRIMHPLPRVD  272 (308)
T ss_dssp             TCCCBCTTGGG-GSCTTCEEECCSCCSS
T ss_pred             cCcccCHHHHh-hcCCCCEEECCCCCCC
Confidence            13567999999 999999988776 544

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=97.68  E-value=4.9e-05  Score=69.59  Aligned_cols=75  Identities=27%  Similarity=0.249  Sum_probs=51.2

Q ss_pred             ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       147 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      ...-+.|+||+|+|.|.+|+.+++.++.+|++|+++|+++.......   .+        ......+...+.+.++++++
T Consensus         8 ~~~~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~---ad--------~~~~~~~~d~~~l~~~~~~~   76 (389)
T 3q2o_A            8 TRIILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQV---AD--------IEIVASYDDLKAIQHLAEIS   76 (389)
T ss_dssp             CCCCCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTT---CS--------EEEECCTTCHHHHHHHHHTC
T ss_pred             cccCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHh---CC--------ceEecCcCCHHHHHHHHHhC
Confidence            33457999999999999999999999999999999997654321100   00        00111111223477889999


Q ss_pred             CEEEEe
Q 024297          227 DVVVCC  232 (269)
Q Consensus       227 Dvvv~~  232 (269)
                      |+|+..
T Consensus        77 dvI~~~   82 (389)
T 3q2o_A           77 DVVTYE   82 (389)
T ss_dssp             SEEEES
T ss_pred             CEeeec
Confidence            998543

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=97.67  E-value=0.00035  Score=62.30  Aligned_cols=145  Identities=13%  Similarity=0.006  Sum_probs=95.3

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCcccccc-CCEEEEEe-cCchHHHHHHH
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLL-GKTVFILG-FGNIGVELAKR  171 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~-g~~vgIiG-~G~iG~~~a~~  171 (269)
                      .+...+|+|.|..+.   +..++  .+|+-++.+.+++                 ..+. |.+|+++| .+++.+.++..
T Consensus       108 lA~~~~vPVINag~~---~~HPt--QaLaDl~Ti~e~~-----------------g~l~~gl~va~vGD~~~va~Sl~~~  165 (307)
T 3tpf_A          108 FARYSKAPVINALSE---LYHPT--QVLGDLFTIKEWN-----------------KMQNGIAKVAFIGDSNNMCNSWLIT  165 (307)
T ss_dssp             HHHHCSSCEEEEECS---SCCHH--HHHHHHHHHHHTT-----------------CCGGGCCEEEEESCSSHHHHHHHHH
T ss_pred             HHHhCCCCEEeCCCC---CcCcH--HHHHHHHHHHHHh-----------------CCCCCCCEEEEEcCCCccHHHHHHH
Confidence            345568999998664   55666  6666677766552                 3588 99999999 57899999999


Q ss_pred             hccCCCEEEEEcCCCCCcccccccc-chhhhccccccccccccCCCCCHHHHHhhCCEEEEecC--CCc--c--------
Q 024297          172 LRPFGVKIIATKRSWASHSQVSCQS-SALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS--LNK--Q--------  238 (269)
Q Consensus       172 l~~~G~~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp--~t~--~--------  238 (269)
                      +..+|++|.++.+..-......... ..++-.+|.      ......+++++++++|||....=  ...  +        
T Consensus       166 ~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~------~~~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~~~~~~  239 (307)
T 3tpf_A          166 AAILGFEISIAMPKNYKISPEIWEFAMKQALISGA------KISLGYDKFEALKDKDVVITDTWVSMGEENEKERKIKEF  239 (307)
T ss_dssp             HHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTC------EEEEESCHHHHHTTCSEEEECCSSCTTGGGGHHHHHHHT
T ss_pred             HHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCC------eEEEEcCHHHHhcCCCEEEecCcccCCchhhHHHHHHHh
Confidence            9999999999987543211100000 000000010      01123689999999999988751  111  0        


Q ss_pred             ccCcCCHHHHhhhCCCCcEEEEcc---CCCCc
Q 024297          239 TVKLCSSSLSSKSMFFATYVVFMF---QGHGV  267 (269)
Q Consensus       239 t~~li~~~~l~~~mk~ga~lIN~~---RG~~v  267 (269)
                      ...-+|.+.++ .+|++++|.-+.   ||.=|
T Consensus       240 ~~y~v~~e~l~-~a~~~ai~mH~lPa~Rg~EI  270 (307)
T 3tpf_A          240 EGFMIDEKAMS-VANKDAILLHCLPAYRGYEV  270 (307)
T ss_dssp             GGGCBCHHHHH-HSCTTCEEEECSCCCBTTTB
T ss_pred             cccccCHHHHH-hcCCCcEEECCCCCCCCcee
Confidence            13668999999 999999998876   56433

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.67  E-value=3.7e-05  Score=68.43  Aligned_cols=101  Identities=17%  Similarity=0.123  Sum_probs=62.3

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhh--ccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV--KNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      ++|+|||.|.||..+|..|...|.+|++++|+..   ..... .+..+  +.|...  ........+.++ +..+|+|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~---~~i~~-~g~~~~~~~g~~~--~~~~~~~~~~~~-~~~~D~vil   75 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRDY---EAIAG-NGLKVFSINGDFT--LPHVKGYRAPEE-IGPMDLVLV   75 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTTH---HHHHH-TCEEEEETTCCEE--ESCCCEESCHHH-HCCCSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCcH---HHHHh-CCCEEEcCCCeEE--EeeceeecCHHH-cCCCCEEEE
Confidence            5799999999999999999999999999998641   11100 00000  011100  000001234544 689999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      ++|.. +++..+.. .-. .+++++.+|.+.-|
T Consensus        76 avk~~-~~~~~l~~-l~~-~l~~~~~iv~l~nG  105 (312)
T 3hn2_A           76 GLKTF-ANSRYEEL-IRP-LVEEGTQILTLQNG  105 (312)
T ss_dssp             CCCGG-GGGGHHHH-HGG-GCCTTCEEEECCSS
T ss_pred             ecCCC-CcHHHHHH-HHh-hcCCCCEEEEecCC
Confidence            99844 44444322 334 67888999887655

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=97.66  E-value=0.00053  Score=61.35  Aligned_cols=140  Identities=14%  Similarity=0.094  Sum_probs=94.4

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec-CchHHHHHHHh
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF-GNIGVELAKRL  172 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~-G~iG~~~a~~l  172 (269)
                      .+...+|+|.|..+.   +..++  .+|+-++.+.+.+                 ..+.|.+|+++|= +++.+.++..+
T Consensus       118 lA~~~~vPVINa~~~---~~HPt--QaLaDl~Ti~e~~-----------------g~l~gl~va~vGD~~rva~Sl~~~~  175 (315)
T 1pvv_A          118 LAKYATVPVINGLSD---FSHPC--QALADYMTIWEKK-----------------GTIKGVKVVYVGDGNNVAHSLMIAG  175 (315)
T ss_dssp             HHHHCSSCEEEEECS---SCCHH--HHHHHHHHHHHHH-----------------SCCTTCEEEEESCCCHHHHHHHHHH
T ss_pred             HHHhCCCCEEcCCCC---CCCcH--HHHHHHHHHHHHh-----------------CCcCCcEEEEECCCcchHHHHHHHH
Confidence            345567999997553   55777  6777777776653                 3589999999996 89999999999


Q ss_pred             ccCCCEEEEEcCCCCCcccccccc-chhhhccccccccccccCCCCCHHHHHhhCCEEEEecCC-------Ccc-----c
Q 024297          173 RPFGVKIIATKRSWASHSQVSCQS-SALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL-------NKQ-----T  239 (269)
Q Consensus       173 ~~~G~~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~-------t~~-----t  239 (269)
                      ..+|++|.++.+..-......... ...+-.+|      .......+++++++++|||....=-       .++     .
T Consensus       176 ~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g------~~~~~~~d~~eav~~aDvvy~~~w~smg~~~~~~~~~~~~~  249 (315)
T 1pvv_A          176 TKLGADVVVATPEGYEPDEKVIKWAEQNAAESG------GSFELLHDPVKAVKDADVIYTDVWASMGQEAEAEERRKIFR  249 (315)
T ss_dssp             HHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHT------CEEEEESCHHHHTTTCSEEEECCCCCSSTTSSSSHHHHHHG
T ss_pred             HHCCCEEEEECCccccCCHHHHHHHHHHHHHcC------CeEEEEeCHHHHhCCCCEEEEcceeccCcccchHHHHHHHH
Confidence            999999999987543211100000 00000001      0011247899999999999985421       111     1


Q ss_pred             cCcCCHHHHhhhCCCCcEEEEcc
Q 024297          240 VKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       240 ~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ..-+|.+.++ .+|++++|.-+.
T Consensus       250 ~y~v~~ell~-~a~~~ai~mH~l  271 (315)
T 1pvv_A          250 PFQVNKDLVK-HAKPDYMFMHCL  271 (315)
T ss_dssp             GGCBCHHHHH-TSCTTCEEEECS
T ss_pred             hcCCCHHHHh-hcCCCcEEECCC
Confidence            3677999999 999999998876

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.63  E-value=8.7e-06  Score=70.55  Aligned_cols=113  Identities=19%  Similarity=0.194  Sum_probs=68.0

Q ss_pred             HHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccc----------------
Q 024297          135 RMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSS----------------  197 (269)
Q Consensus       135 ~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~----------------  197 (269)
                      .+++.-..|.......|.+++|.|+|.|.+|..+|+.|...|. +|+++|+..-.. .....+.                
T Consensus        13 ~Rq~~l~~~g~~~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~-sNl~Rq~l~~~~diG~~Ka~~~~   91 (249)
T 1jw9_B           13 NRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSL-SNLQRQTLHSDATVGQPKVESAR   91 (249)
T ss_dssp             HHHHTSTTTHHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCG-GGGGTCTTCCGGGTTSBHHHHHH
T ss_pred             hheecccccCHHHHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCccc-ccCCcccccChhhcCcHHHHHHH
Confidence            3344434465444467999999999999999999999999998 899999865110 0000000                


Q ss_pred             -hhhhcc-ccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297          198 -ALAVKN-GIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS  249 (269)
Q Consensus       198 -~~~~~~-~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~  249 (269)
                       .+.-.| +.............+++++++++|+|+.+.+ +.+++.+++....+
T Consensus        92 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~  144 (249)
T 1jw9_B           92 DALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFA  144 (249)
T ss_dssp             HHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCcEEEEEeccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHH
Confidence             000000 0000000000111246788999999999987 56778777775444

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.62  E-value=8.1e-05  Score=66.68  Aligned_cols=110  Identities=16%  Similarity=0.088  Sum_probs=67.7

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCH---HHHH
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI---FEFA  223 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~ell  223 (269)
                      +.++.|+++.|+|.|.+|++++..|...|+ +|++++|+.++.......-..+.-..+    .........++   .+.+
T Consensus       143 ~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~----~~v~~~~~~~l~~~~~~l  218 (312)
T 3t4e_A          143 GFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTD----CVVTVTDLADQHAFTEAL  218 (312)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSS----CEEEEEETTCHHHHHHHH
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccC----cceEEechHhhhhhHhhc
Confidence            356899999999999999999999999999 899999983321100000000000000    00001122444   6778


Q ss_pred             hhCCEEEEecCCCc--ccc-CcC-CHHHHhhhCCCCcEEEEccCCC
Q 024297          224 SKADVVVCCLSLNK--QTV-KLC-SSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       224 ~~aDvvv~~lp~t~--~t~-~li-~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      .++|+||++.|..-  ... .++ +.   + .++++.+++++.-.+
T Consensus       219 ~~~DiIINaTp~Gm~~~~~~~~~~~~---~-~l~~~~~v~D~vY~P  260 (312)
T 3t4e_A          219 ASADILTNGTKVGMKPLENESLIGDV---S-LLRPELLVTECVYNP  260 (312)
T ss_dssp             HHCSEEEECSSTTSTTSTTCCSCCCG---G-GSCTTCEEEECCCSS
T ss_pred             cCceEEEECCcCCCCCCCCCcccCCH---H-HcCCCCEEEEeccCC
Confidence            99999999998653  111 111 32   4 577888888876543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.61  E-value=1.9e-05  Score=61.67  Aligned_cols=37  Identities=24%  Similarity=0.332  Sum_probs=32.7

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ..+++.|+|+|.+|+.+|+.|...|.+|+++|+++..
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~   41 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEK   41 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHH
Confidence            4578999999999999999999999999999986543

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=97.61  E-value=0.00066  Score=60.87  Aligned_cols=140  Identities=15%  Similarity=0.064  Sum_probs=92.6

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec-CchHHHHHHHh
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF-GNIGVELAKRL  172 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~-G~iG~~~a~~l  172 (269)
                      .+...+|+|.|..+.   +..++  .+|+-++.+.+++                 ..+.|.+|+++|= .++.+.++..+
T Consensus       118 lA~~~~vPVINa~~~---~~HPt--QaLaDl~Ti~e~~-----------------g~l~gl~va~vGD~~~va~Sl~~~~  175 (321)
T 1oth_A          118 LAKEASIPIINGLSD---LYHPI--QILADYLTLQEHY-----------------SSLKGLTLSWIGDGNNILHSIMMSA  175 (321)
T ss_dssp             HHHHCSSCEEESCCS---SCCHH--HHHHHHHHHHHHH-----------------SCCTTCEEEEESCSSHHHHHHHTTT
T ss_pred             HHHhCCCCEEcCCCC---CCCcH--HHHHHHHHHHHHh-----------------CCcCCcEEEEECCchhhHHHHHHHH
Confidence            345567999997653   55777  6777777777653                 3589999999996 45999999999


Q ss_pred             ccCCCEEEEEcCCCCCcccccccc-chhhhccccccccccccCCCCCHHHHHhhCCEEEEecCC--C--cc--------c
Q 024297          173 RPFGVKIIATKRSWASHSQVSCQS-SALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL--N--KQ--------T  239 (269)
Q Consensus       173 ~~~G~~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~--t--~~--------t  239 (269)
                      ..+|++|.++.+..-......... ...+-.+|      .......+++++++++|||..-+-.  .  .+        .
T Consensus       176 ~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G------~~~~~~~d~~eav~~aDvvy~d~w~s~g~e~~~~~~~~~~~  249 (321)
T 1oth_A          176 AKFGMHLQAATPKGYEPDASVTKLAEQYAKENG------TKLLLTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQ  249 (321)
T ss_dssp             GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHT------CCEEEESCHHHHHTTCSEEEECCSSCTTCGGGHHHHHHHTT
T ss_pred             HHcCCeEEEECCccccCCHHHHHHHHHHHHHcC------CeEEEEECHHHHhccCCEEEEeccccccchhhhHHHHHhcc
Confidence            999999999987543211100000 00000000      0011247899999999999994311  1  11        1


Q ss_pred             cCcCCHHHHhhhCCCCcEEEEcc
Q 024297          240 VKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       240 ~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ..-+|.+.++ .+|++++|.-+.
T Consensus       250 ~y~v~~~~l~-~a~~dai~mH~l  271 (321)
T 1oth_A          250 GYQVTMKTAK-VAASDWTFLHCL  271 (321)
T ss_dssp             TCCBCHHHHH-TSCTTCEEEECS
T ss_pred             CceECHHHHh-hcCCCCEEECCC
Confidence            2567999999 999999998876

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=97.59  E-value=0.00055  Score=61.43  Aligned_cols=142  Identities=18%  Similarity=0.187  Sum_probs=93.4

Q ss_pred             HhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEe-cCchHHHHHHHhc
Q 024297           95 ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILG-FGNIGVELAKRLR  173 (269)
Q Consensus        95 ~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG-~G~iG~~~a~~l~  173 (269)
                      +...+|+|.|..+.   +..++  .+|+-++.+.+.+                 ..+.|.||+++| .+++.+.++..+.
T Consensus       121 A~~~~vPVINag~~---~~HPt--QaLaDl~Ti~e~~-----------------g~l~glkva~vGD~~rva~Sl~~~~~  178 (323)
T 3gd5_A          121 AHYAGIPVINALTD---HEHPC--QVVADLLTIRENF-----------------GRLAGLKLAYVGDGNNVAHSLLLGCA  178 (323)
T ss_dssp             HHHHCSCEEEEECS---SCCHH--HHHHHHHHHHHHH-----------------SCCTTCEEEEESCCCHHHHHHHHHHH
T ss_pred             HHhCCCCEEeCCCC---CCCcH--HHHHHHHHHHHHh-----------------CCCCCCEEEEECCCCcHHHHHHHHHH
Confidence            44568999998764   45666  6666677766653                 348999999999 5789999999999


Q ss_pred             cCCCEEEEEcCCCCCcccccccc-chhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCC-------cc-----cc
Q 024297          174 PFGVKIIATKRSWASHSQVSCQS-SALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLN-------KQ-----TV  240 (269)
Q Consensus       174 ~~G~~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t-------~~-----t~  240 (269)
                      .+|++|.++.+..-......... ..++-.+|      .......+++++++++|||....=-.       ++     ..
T Consensus       179 ~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g------~~v~~~~d~~eav~~aDvvyt~~wqs~g~~~~~~~~~~~~~~  252 (323)
T 3gd5_A          179 KVGMSIAVATPEGFTPDPAVSARASEIAGRTG------AEVQILRDPFEAARGAHILYTDVWTSMGQEAETQHRLQLFEQ  252 (323)
T ss_dssp             HHTCEEEEECCTTCCCCHHHHHHHHHHHHHHT------CCEEEESCHHHHHTTCSEEEECCCC---------CCHHHHTT
T ss_pred             HcCCEEEEECCCcccCCHHHHHHHHHHHHHcC------CeEEEECCHHHHhcCCCEEEEeceecCCCcccchHHHHHhhc
Confidence            99999999987543211100000 00000000      00112468999999999998764211       01     13


Q ss_pred             CcCCHHHHhhhCCCCcEEEEcc---CCC
Q 024297          241 KLCSSSLSSKSMFFATYVVFMF---QGH  265 (269)
Q Consensus       241 ~li~~~~l~~~mk~ga~lIN~~---RG~  265 (269)
                      .-+|.+.++ .+|++++|.-+.   ||.
T Consensus       253 y~vt~ell~-~ak~dai~mHclPa~Rg~  279 (323)
T 3gd5_A          253 YQINAALLN-CAAAEAIVLHCLPAHRGE  279 (323)
T ss_dssp             CCBCHHHHH-TSCTTCEEEECSCCCBTT
T ss_pred             cCCCHHHHh-hcCCCcEEECCCCCCCCc
Confidence            568999999 999999998875   664

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=97.58  E-value=0.00052  Score=61.64  Aligned_cols=136  Identities=15%  Similarity=0.112  Sum_probs=92.4

Q ss_pred             HhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecC--chHHHHHHHh
Q 024297           95 ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG--NIGVELAKRL  172 (269)
Q Consensus        95 ~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G--~iG~~~a~~l  172 (269)
                      +...+|+|.|..+.   +..++  .+|+-++.+.+.+                 ..+.|.+|+++|=|  ++.+.++..+
T Consensus       131 A~~~~vPVINa~~~---~~HPt--QaLaDl~Ti~e~~-----------------g~l~gl~va~vGD~~~rva~Sl~~~~  188 (325)
T 1vlv_A          131 AEYSGVPVYNGLTD---EFHPT--QALADLMTIEENF-----------------GRLKGVKVVFMGDTRNNVATSLMIAC  188 (325)
T ss_dssp             HHHHCSCEEESCCS---SCCHH--HHHHHHHHHHHHH-----------------SCSTTCEEEEESCTTSHHHHHHHHHH
T ss_pred             HHhCCCCEEeCCCC---CCCcH--HHHHHHHHHHHHh-----------------CCcCCcEEEEECCCCcCcHHHHHHHH
Confidence            44457999996553   55677  6777777776653                 35899999999975  9999999999


Q ss_pred             ccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHHhhCCEEEEecCC-------Ccc---
Q 024297          173 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKADVVVCCLSL-------NKQ---  238 (269)
Q Consensus       173 ~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aDvvv~~lp~-------t~~---  238 (269)
                      ..+|++|.++.+..-.......   ...      .+.....+    ...+++++++++|||....=.       .++   
T Consensus       189 ~~~G~~v~~~~P~~~~p~~~~~---~~~------~~~a~~~G~~v~~~~d~~eav~~aDvvyt~~w~smg~~~~~~~~~~  259 (325)
T 1vlv_A          189 AKMGMNFVACGPEELKPRSDVF---KRC------QEIVKETDGSVSFTSNLEEALAGADVVYTDVWASMGEEDKEKERMA  259 (325)
T ss_dssp             HHTTCEEEEESCGGGCCCHHHH---HHH------HHHHHHHCCEEEEESCHHHHHTTCSEEEECCCC----------CHH
T ss_pred             HHCCCEEEEECCccccCCHHHH---HHH------HHHHHHcCCeEEEEcCHHHHHccCCEEEeccccccccccchHhHHH
Confidence            9999999999864322110000   000      00000111    247899999999999985321       111   


Q ss_pred             --ccCcCCHHHHhhhC-CCCcEEEEcc
Q 024297          239 --TVKLCSSSLSSKSM-FFATYVVFMF  262 (269)
Q Consensus       239 --t~~li~~~~l~~~m-k~ga~lIN~~  262 (269)
                        ...-+|.+.++ .+ |++++|.-+.
T Consensus       260 ~~~~y~v~~ell~-~a~k~dai~mH~L  285 (325)
T 1vlv_A          260 LLKPYQVNERVME-MTGKSETIFMHCL  285 (325)
T ss_dssp             HHGGGCBCHHHHH-TTCCTTCEEEECS
T ss_pred             HHhhcCCCHHHHH-hccCCCeEEECCC
Confidence              24677999999 99 9999998876

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=97.58  E-value=1.2e-05  Score=63.97  Aligned_cols=86  Identities=13%  Similarity=0.072  Sum_probs=59.4

Q ss_pred             CCEEEEEec----CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          153 GKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       153 g~~vgIiG~----G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      -++|+|||+    |++|..+++.|...|++|+.++++.....                .....   .+.++.++....|+
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~----------------i~G~~---~~~sl~el~~~~Dl   73 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKT----------------LLGQQ---GYATLADVPEKVDM   73 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSE----------------ETTEE---CCSSTTTCSSCCSE
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccc----------------cCCee---ccCCHHHcCCCCCE
Confidence            578999999    89999999999999999988887641000                00111   23456666678999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      +++++| .+....++.. ..+  ...++++++.
T Consensus        74 vii~vp-~~~v~~v~~~-~~~--~g~~~i~i~~  102 (145)
T 2duw_A           74 VDVFRN-SEAAWGVAQE-AIA--IGAKTLWLQL  102 (145)
T ss_dssp             EECCSC-STHHHHHHHH-HHH--HTCCEEECCT
T ss_pred             EEEEeC-HHHHHHHHHH-HHH--cCCCEEEEcC
Confidence            999999 4566666543 333  4556666654

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.57  E-value=3.4e-05  Score=68.02  Aligned_cols=107  Identities=13%  Similarity=0.075  Sum_probs=65.4

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      .++.++++.|+|.|.+|+++|+.|...| +|++++|+.++.......   +... +. ...... ....++.+.+.++|+
T Consensus       124 ~~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~---~~~~-~~-~~~~~~-~d~~~~~~~~~~~Di  196 (287)
T 1nvt_A          124 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKE---IAEK-LN-KKFGEE-VKFSGLDVDLDGVDI  196 (287)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHH---HHHH-HT-CCHHHH-EEEECTTCCCTTCCE
T ss_pred             CCcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHH---Hhhh-cc-ccccee-EEEeeHHHhhCCCCE
Confidence            4578999999999999999999999999 999999875431111000   0000 00 000000 001112445678999


Q ss_pred             EEEecCCCccc--c-CcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          229 VVCCLSLNKQT--V-KLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       229 vv~~lp~t~~t--~-~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      ||++.|.....  . ..+.  ..+ .++++++++++.-.+
T Consensus       197 lVn~ag~~~~~~~~~~~~~--~~~-~l~~~~~v~Dv~y~p  233 (287)
T 1nvt_A          197 IINATPIGMYPNIDVEPIV--KAE-KLREDMVVMDLIYNP  233 (287)
T ss_dssp             EEECSCTTCTTCCSSCCSS--CST-TCCSSSEEEECCCSS
T ss_pred             EEECCCCCCCCCCCCCCCC--CHH-HcCCCCEEEEeeeCC
Confidence            99999865421  1 1121  135 688999999997543

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.50  E-value=1.3e-05  Score=70.90  Aligned_cols=96  Identities=16%  Similarity=0.113  Sum_probs=61.9

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH-hhCCEEEEe
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-SKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDvvv~~  232 (269)
                      ++|+|||.|.||..+|..|...|.+|++++|+...- ...       ..+|..+...    . .+..+.+ ..+|+|+++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~-~~~-------~~~g~~~~~~----~-~~~~~~~~~~~D~vila   69 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTI-TYY-------TVPHAPAQDI----V-VKGYEDVTNTFDVIIIA   69 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEE-EEE-------SSTTSCCEEE----E-EEEGGGCCSCEEEEEEC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcE-EEE-------ecCCeeccce----e-cCchHhcCCCCCEEEEe
Confidence            589999999999999999998899999999874321 100       0111000000    0 1222333 789999999


Q ss_pred             cCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          233 LSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       233 lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +|.. +++..+.. .-. .+++++.+|.+.=|=
T Consensus        70 vk~~-~~~~~l~~-l~~-~l~~~~~iv~~~nGi   99 (294)
T 3g17_A           70 VKTH-QLDAVIPH-LTY-LAHEDTLIILAQNGY   99 (294)
T ss_dssp             SCGG-GHHHHGGG-HHH-HEEEEEEEEECCSSC
T ss_pred             CCcc-CHHHHHHH-HHH-hhCCCCEEEEeccCc
Confidence            9844 45554433 334 567888888887663

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=97.48  E-value=3.8e-05  Score=69.01  Aligned_cols=112  Identities=12%  Similarity=0.026  Sum_probs=71.2

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcccc---ccccchhhhccccccc------cccccCCCCCHHHH
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV---SCQSSALAVKNGIIDD------LVDEKGCHEDIFEF  222 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~------~~~~~~~~~~l~el  222 (269)
                      .-.+|+|||.|.||+.+|..+...|++|+.+|+++......   .....+..+..|.+..      .........++.+.
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a   84 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA   84 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence            34689999999999999999999999999999875431110   0000011111111110      00111124688999


Q ss_pred             HhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          223 ASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       223 l~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      ++.||+|+=++|-+-+.+.-+-++.=+ .++++++|-....+
T Consensus        85 ~~~ad~ViEav~E~l~iK~~lf~~l~~-~~~~~aIlaSNTSs  125 (319)
T 3ado_A           85 VEGVVHIQECVPENLDLKRKIFAQLDS-IVDDRVVLSSSSSC  125 (319)
T ss_dssp             TTTEEEEEECCCSCHHHHHHHHHHHHT-TCCSSSEEEECCSS
T ss_pred             hccCcEEeeccccHHHHHHHHHHHHHH-Hhhhcceeehhhhh
Confidence            999999999999777665544443334 78999988765544

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=97.47  E-value=0.001  Score=60.11  Aligned_cols=144  Identities=12%  Similarity=0.062  Sum_probs=93.6

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEe-cCchHHHHHHHh
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILG-FGNIGVELAKRL  172 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG-~G~iG~~~a~~l  172 (269)
                      .+...+|+|.|..+.   +..++  .+|+-++.+.+.++              .|..+.|.+|+++| .+++.+.++..+
T Consensus       135 lA~~~~vPVINag~~---~~HPt--QaLaDl~Ti~e~~~--------------~G~~l~glkva~vGD~~rva~Sl~~~~  195 (339)
T 4a8t_A          135 LANCATIPVINGMSD---YNHPT--QELGDLCTMVEHLP--------------EGKKLEDCKVVFVGDATQVCFSLGLIT  195 (339)
T ss_dssp             HHHHCSSCEEECCCS---SCCHH--HHHHHHHHHHHTCC--------------TTCCGGGCEEEEESSCCHHHHHHHHHH
T ss_pred             HHHhCCCCEEECCCC---CcCcH--HHHHHHHHHHHHhh--------------cCCCCCCCEEEEECCCchhHHHHHHHH
Confidence            345678999998764   45666  66666666665420              02268999999999 578999999999


Q ss_pred             ccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHHhhCCEEEEec--CC--Cccc-----
Q 024297          173 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKADVVVCCL--SL--NKQT-----  239 (269)
Q Consensus       173 ~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aDvvv~~l--p~--t~~t-----  239 (269)
                      ..+|++|.++.+..-........   ..      .......+    ...+++ +++++|||..-+  +.  ..+.     
T Consensus       196 ~~~G~~v~~~~P~~~~~~~~~~~---~~------~~~a~~~g~~v~~~~d~~-av~~aDvvytd~w~smg~~~~~~~er~  265 (339)
T 4a8t_A          196 TKMGMNFVHFGPEGFQLNEEHQA---KL------AKNCEVSGGSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERM  265 (339)
T ss_dssp             HHTTCEEEEECCTTSSCCHHHHH---HH------HHHHHHHCCEEEEECCGG-GGTTCSEEEECCSSCCTTSCCCHHHHH
T ss_pred             HHcCCEEEEECCcccCCCHHHHH---HH------HHHHHHcCCEEEEECChh-HHcCCCEEEecCcccCCchhhhhHHHH
Confidence            99999999998754321110000   00      00001111    236788 999999999743  11  0110     


Q ss_pred             -----cCcCCHHHHhhhCCCCcEEEEcc---CCCCc
Q 024297          240 -----VKLCSSSLSSKSMFFATYVVFMF---QGHGV  267 (269)
Q Consensus       240 -----~~li~~~~l~~~mk~ga~lIN~~---RG~~v  267 (269)
                           ..-+|.+.++ .+|++++|.-+.   ||.=|
T Consensus       266 ~~~~~~y~vt~ell~-~ak~dai~mHcLPa~Rg~EI  300 (339)
T 4a8t_A          266 KVFYPKYQVNQEMMD-RAGANCKFMHCLPATRGEEV  300 (339)
T ss_dssp             HHHTTTTCBCHHHHH-HHCTTCEEEECSCCCBTTTB
T ss_pred             HHhccccccCHHHHH-hcCCCcEEECCCCCCCCCee
Confidence                 2668999999 899999998876   56433

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=97.47  E-value=0.00047  Score=61.55  Aligned_cols=139  Identities=14%  Similarity=0.081  Sum_probs=91.4

Q ss_pred             HhcC-CcEEEecCC-CCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec---CchHHHHH
Q 024297           95 ATRC-GIKVARIPG-DVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF---GNIGVELA  169 (269)
Q Consensus        95 ~~~~-gI~v~n~~~-~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~---G~iG~~~a  169 (269)
                      +... +|+|.|..+ .   +..++  .+|+-++.+.+++                 ..+.|.+|+++|=   |++.+.++
T Consensus       116 a~~~~~vPVINag~G~---~~HPt--QaLaDl~Ti~e~~-----------------g~l~gl~va~vGD~~~~rva~Sl~  173 (310)
T 3csu_A          116 TEFSGNVPVLNAGDGS---NQHPT--QTLLDLFTIQETQ-----------------GRLDNLHVAMVGDLKYGRTVHSLT  173 (310)
T ss_dssp             HHHCTTCCEEEEEETT---SCCHH--HHHHHHHHHHHHH-----------------SCSSSCEEEEESCTTTCHHHHHHH
T ss_pred             HHhcCCCCEEcCccCC---CCCch--HHHHHHHHHHHHh-----------------CCcCCcEEEEECCCCCCchHHHHH
Confidence            4455 799999764 3   44666  6676777776653                 3589999999997   59999999


Q ss_pred             HHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCc----c------
Q 024297          170 KRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNK----Q------  238 (269)
Q Consensus       170 ~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~----~------  238 (269)
                      ..+..+ |++|.++.+..-.......   ...-.+|      .......+++++++++|||....=-.+    +      
T Consensus       174 ~~~~~~~g~~v~~~~P~~~~~~~~~~---~~~~~~g------~~~~~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~  244 (310)
T 3csu_A          174 QALAKFDGNRFYFIAPDALAMPQYIL---DMLDEKG------IAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVK  244 (310)
T ss_dssp             HHHHTSSSCEEEEECCGGGCCCHHHH---HHHHHTT------CCEEECSCGGGTTTTCSEEEECC---------------
T ss_pred             HHHHhCCCCEEEEECCcccccCHHHH---HHHHHcC------CeEEEEcCHHHHhcCCCEEEECCccccccCHHHHHHHh
Confidence            999999 9999999864322110000   0000011      001123678999999999988743111    1      


Q ss_pred             ccCcCCHHHHhhhCCCCcEEEEcc-CCC
Q 024297          239 TVKLCSSSLSSKSMFFATYVVFMF-QGH  265 (269)
Q Consensus       239 t~~li~~~~l~~~mk~ga~lIN~~-RG~  265 (269)
                      ...-+|.+.++ .+|++++|.-+. ||.
T Consensus       245 ~~y~v~~~ll~-~a~~~ai~mH~lPrg~  271 (310)
T 3csu_A          245 AQFVLRASDLH-NAKANMKVLHPLPRVD  271 (310)
T ss_dssp             --CCBCGGGGT-TCCTTCEEECCSCCSS
T ss_pred             hccCCCHHHHh-hcCCCCEEECCCCCCC
Confidence            13667999999 999999998776 543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.44  E-value=8.5e-05  Score=58.88  Aligned_cols=102  Identities=7%  Similarity=0.027  Sum_probs=57.9

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH-HhhCCEEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKADVVV  230 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDvvv  230 (269)
                      .++++.|+|+|.+|+.+++.|...|.+|++++++..........    ..+.| ..-........+.+.++ +.++|+|+
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~----~~~~~-~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQ----RLGDN-ADVIPGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHH----HHCTT-CEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHH----hhcCC-CeEEEcCCCCHHHHHHcChhhCCEEE
Confidence            35679999999999999999999999999999864210000000    00001 00011111122345555 78999999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      ++.+....  .+.-....+ .+.+...+|..
T Consensus        77 ~~~~~d~~--n~~~~~~a~-~~~~~~~ii~~  104 (153)
T 1id1_A           77 ALSDNDAD--NAFVVLSAK-DMSSDVKTVLA  104 (153)
T ss_dssp             ECSSCHHH--HHHHHHHHH-HHTSSSCEEEE
T ss_pred             EecCChHH--HHHHHHHHH-HHCCCCEEEEE
Confidence            99875433  222233344 55444444443

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.43  E-value=7.6e-05  Score=67.92  Aligned_cols=94  Identities=17%  Similarity=0.118  Sum_probs=58.5

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      +.++|+|+|.|.+|+.+|+.|.. ..+|.+.+++.+........          .....-+....+++.++++++|+|++
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~----------~~~~~~d~~d~~~l~~~~~~~DvVi~   83 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEF----------ATPLKVDASNFDKLVEVMKEFELVIG   83 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTT----------SEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhcc----------CCcEEEecCCHHHHHHHHhCCCEEEE
Confidence            34579999999999999999975 47899998865431110000          00111111234568899999999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ++|..      ++....+..++.|.-+++++
T Consensus        84 ~~p~~------~~~~v~~~~~~~g~~yvD~s  108 (365)
T 3abi_A           84 ALPGF------LGFKSIKAAIKSKVDMVDVS  108 (365)
T ss_dssp             CCCGG------GHHHHHHHHHHHTCEEEECC
T ss_pred             ecCCc------ccchHHHHHHhcCcceEeee
Confidence            99843      22333332455566666654

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=97.43  E-value=0.00046  Score=62.26  Aligned_cols=138  Identities=14%  Similarity=0.055  Sum_probs=93.1

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecC--chHHHHHHH
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG--NIGVELAKR  171 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G--~iG~~~a~~  171 (269)
                      .+...+|+|.|.-+.   +..++  .+|+-++.+.+++                |..+.|.+|+++|=|  ++++.++..
T Consensus       117 lA~~s~vPVINa~~~---~~HPt--Q~LaDl~Ti~e~~----------------g~~l~gl~va~vGD~~~~va~Sl~~~  175 (335)
T 1dxh_A          117 LAKFAGVPVFNGLTD---EYHPT--QMLADVLTMREHS----------------DKPLHDISYAYLGDARNNMGNSLLLI  175 (335)
T ss_dssp             HHHHSSSCEEEEECS---SCCHH--HHHHHHHHHHHTC----------------SSCGGGCEEEEESCCSSHHHHHHHHH
T ss_pred             HHHhCCCCEEcCCCC---CCCcH--HHHHHHHHHHHHc----------------CCCcCCeEEEEecCCccchHHHHHHH
Confidence            345568999997653   55676  6666777766642                226899999999985  999999999


Q ss_pred             hccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHHhhCCEEEEecCCC--------cc-
Q 024297          172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKADVVVCCLSLN--------KQ-  238 (269)
Q Consensus       172 l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aDvvv~~lp~t--------~~-  238 (269)
                      +..+|++|.++.+..-.......   ...      .+.....+    ...+++++++++|||....=..        .+ 
T Consensus       176 ~~~~G~~v~~~~P~~~~p~~~~~---~~~------~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~~~e~~~er  246 (335)
T 1dxh_A          176 GAKLGMDVRIAAPKALWPHDEFV---AQC------KKFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVSMGEPVEAWGER  246 (335)
T ss_dssp             HHHTTCEEEEECCGGGSCCHHHH---HHH------HHHHHHHTCEEEEESCHHHHTTTCSEEEECCCSCSSSCGGGCHHH
T ss_pred             HHHcCCEEEEECCcccCCCHHHH---HHH------HHHHHHcCCeEEEEeCHHHHhCCCCEEEeCCccccCccchhhHHH
Confidence            99999999999864322111000   000      00000111    2478999999999999854310        00 


Q ss_pred             ----ccCcCCHHHHhhhC-CCCcEEEEcc
Q 024297          239 ----TVKLCSSSLSSKSM-FFATYVVFMF  262 (269)
Q Consensus       239 ----t~~li~~~~l~~~m-k~ga~lIN~~  262 (269)
                          ...-+|.+.++ .+ ||+++|.-+.
T Consensus       247 ~~~~~~y~v~~~ll~-~a~~~~ai~mHcL  274 (335)
T 1dxh_A          247 IKELLPYQVNMEIMK-ATGNPRAKFMHCL  274 (335)
T ss_dssp             HHHHGGGCBCHHHHH-TTCCSSCEEEECS
T ss_pred             HHHhhcceeCHHHHH-hccCCCeEEECCC
Confidence                23578999999 99 9999998764

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=97.37  E-value=0.0012  Score=59.83  Aligned_cols=147  Identities=12%  Similarity=0.041  Sum_probs=93.2

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEe-cCchHHHHHHHh
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILG-FGNIGVELAKRL  172 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG-~G~iG~~~a~~l  172 (269)
                      .+...+|+|.|..+.   +..++  .+|+-++.+.+.++              .|..+.|.+|+++| .+++.+.++..+
T Consensus       113 lA~~~~vPVINag~~---~~HPt--QaLaDl~TI~E~~~--------------~G~~l~glkva~vGD~~rva~Sl~~~~  173 (355)
T 4a8p_A          113 LANCATIPVINGMSD---YNHPT--QELGDLCTMVEHLP--------------EGKKLEDCKVVFVGDATQVCFSLGLIT  173 (355)
T ss_dssp             HHHHCSSCEEECCCS---SCCHH--HHHHHHHHHHHTCC--------------TTCCGGGCEEEEESCCCHHHHHHHHHH
T ss_pred             HHHhCCCCEEeCCCC---CCCcH--HHHHHHHHHHHHhh--------------cCCCCCCCEEEEECCCchhHHHHHHHH
Confidence            345668999998664   45666  66666666665420              02268999999999 578999999999


Q ss_pred             ccCCCEEEEEcCCCCCccccccccc-hhhhccccccccccccCCCCCHHHHHhhCCEEEEec--CC-C-c----c-----
Q 024297          173 RPFGVKIIATKRSWASHSQVSCQSS-ALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL--SL-N-K----Q-----  238 (269)
Q Consensus       173 ~~~G~~V~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l--p~-t-~----~-----  238 (269)
                      ..+|++|.++.+..-.......... ..+-.+|      .......+++ +++++|||..-+  +. . .    +     
T Consensus       174 ~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G------~~v~~~~d~~-av~~aDVVytd~w~smgq~~~~~~er~~~~  246 (355)
T 4a8p_A          174 TKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSG------GSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKVF  246 (355)
T ss_dssp             HHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHS------CEEEEECCGG-GGTTCSEEEECCSSEETTEECCHHHHHHHH
T ss_pred             HHcCCEEEEECCCccCCCHHHHHHHHHHHHHcC------CeEEEECCHH-HHcCCCEEEecccccCcchhhhhHHHHHHh
Confidence            9999999999875432111000000 0000001      0011236788 999999999743  10 1 1    1     


Q ss_pred             c-cCcCCHHHHhhhCCCCcEEEEcc---CCCCc
Q 024297          239 T-VKLCSSSLSSKSMFFATYVVFMF---QGHGV  267 (269)
Q Consensus       239 t-~~li~~~~l~~~mk~ga~lIN~~---RG~~v  267 (269)
                      . ..-+|.+.++ .+|++++|.-+.   ||.=|
T Consensus       247 ~~~y~vt~ell~-~ak~dai~MHcLPa~Rg~EI  278 (355)
T 4a8p_A          247 YPKYQVNQEMMD-RAGANCKFMHCLPATRGEEV  278 (355)
T ss_dssp             TTTTCBCHHHHH-HHCTTCEEEECSCCCBTTTB
T ss_pred             ccccccCHHHHH-hcCCCcEEECCCCCCCCCee
Confidence            1 2668999999 899999998876   56433

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=97.36  E-value=0.00098  Score=60.70  Aligned_cols=140  Identities=16%  Similarity=0.104  Sum_probs=91.1

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecC--chHHHHHHH
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG--NIGVELAKR  171 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G--~iG~~~a~~  171 (269)
                      .+...+|+|.|.-+.   +..++  .+|+-++.+.+.+                 ..+.|++|+++|=+  ++++.++..
T Consensus       143 lA~~s~vPVINa~~~---~~HPt--QaLaDl~Ti~E~~-----------------G~l~glkva~vGD~~nnva~Sl~~~  200 (365)
T 4amu_A          143 LVKYSGVPVWNGLTD---DEHPT--QIIADFMTMKEKF-----------------GNLKNKKIVFIGDYKNNVGVSTMIG  200 (365)
T ss_dssp             HHHHHCSCEEEEECS---SCCHH--HHHHHHHHHHHHH-----------------SSCTTCEEEEESSTTSHHHHHHHHH
T ss_pred             HHHhCCCCEEeCCCC---CCCcH--HHHHHHHHHHHHh-----------------CCCCCCEEEEECCCCcchHHHHHHH
Confidence            345568999998654   44666  6666666666543                 23899999999976  889999999


Q ss_pred             hccCCCEEEEEcCCCCCc--ccccc-ccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec--CCCcc--------
Q 024297          172 LRPFGVKIIATKRSWASH--SQVSC-QSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL--SLNKQ--------  238 (269)
Q Consensus       172 l~~~G~~V~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l--p~t~~--------  238 (269)
                      +..+|++|.++.+..-..  ..... .-..++-.+|      .......+++++++++|||..-+  +...+        
T Consensus       201 ~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g------~~i~~~~d~~eav~~aDVVytd~W~smg~~~~~~~er~  274 (365)
T 4amu_A          201 AAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNG------GSLRFSTDKILAAQDADVIYTDVWVSLGEPFELFDKRI  274 (365)
T ss_dssp             HHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHS------CEEEEESCHHHHTTTCSEEEECCSCCTTCCHHHHHHHH
T ss_pred             HHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcC------CEEEEECCHHHHhcCCCEEEecccccCCchhhhHHHHH
Confidence            999999999998643211  00000 0000000001      00112368999999999999842  11211        


Q ss_pred             ---ccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          239 ---TVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       239 ---t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                         ...-+|.+.++ .+|++++|.-+.
T Consensus       275 ~~~~~y~vt~ell~-~a~~dai~MHcL  300 (365)
T 4amu_A          275 GELKNFQVDMNMIK-AAKNDVIFLHCL  300 (365)
T ss_dssp             HHHTTCCBCHHHHH-HSCTTCEEEECS
T ss_pred             HHhcccccCHHHHH-hcCCCcEEECCC
Confidence               13568999999 999999998765

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.35  E-value=2.5e-05  Score=68.48  Aligned_cols=101  Identities=13%  Similarity=0.090  Sum_probs=61.8

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH-hhCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-SKAD  227 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aD  227 (269)
                      .++.+++++|+|.|.+|++++..|...|.+|++++|+.++.......   +.. .+.    .    ...+++++. .++|
T Consensus       115 ~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~---~~~-~~~----~----~~~~~~~~~~~~~D  182 (272)
T 1p77_A          115 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAER---FQP-YGN----I----QAVSMDSIPLQTYD  182 (272)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHH---HGG-GSC----E----EEEEGGGCCCSCCS
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---ccc-cCC----e----EEeeHHHhccCCCC
Confidence            45789999999999999999999999999999999986442111000   000 000    0    001122222 3899


Q ss_pred             EEEEecCCCcccc-CcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          228 VVVCCLSLNKQTV-KLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       228 vvv~~lp~t~~t~-~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +||++.|...... .-++.+    .++++.+++++.-.+
T Consensus       183 ivIn~t~~~~~~~~~~i~~~----~l~~~~~v~D~~y~p  217 (272)
T 1p77_A          183 LVINATSAGLSGGTASVDAE----ILKLGSAFYDMQYAK  217 (272)
T ss_dssp             EEEECCCC-------CCCHH----HHHHCSCEEESCCCT
T ss_pred             EEEECCCCCCCCCCCCCCHH----HcCCCCEEEEeeCCC
Confidence            9999998654311 013433    345688888887654

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=97.35  E-value=0.00024  Score=64.88  Aligned_cols=71  Identities=18%  Similarity=0.278  Sum_probs=49.5

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      .+.+++|+|+|.|.+|+.+++.++.+|++|+++|+++.......   .+        ......+.+.+.+.++++++|+|
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~---ad--------~~~~~~~~d~~~l~~~~~~~dvi   77 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYV---AH--------EFIQAKYDDEKALNQLGQKCDVI   77 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGG---SS--------EEEECCTTCHHHHHHHHHHCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhh---CC--------EEEECCCCCHHHHHHHHHhCCcc
Confidence            46789999999999999999999999999999997654321100   00        00111111234577888899988


Q ss_pred             EE
Q 024297          230 VC  231 (269)
Q Consensus       230 v~  231 (269)
                      +.
T Consensus        78 ~~   79 (377)
T 3orq_A           78 TY   79 (377)
T ss_dssp             EE
T ss_pred             ee
Confidence            55

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.32  E-value=6e-05  Score=67.37  Aligned_cols=77  Identities=14%  Similarity=0.094  Sum_probs=47.9

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      .++|+|||.|.||..+|..|...|. +|..+|++........   .+...... ............++ +.++.||+|++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~---~~l~~~~~-~~~~~~~i~~t~d~-~a~~~aDiVi~   78 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKA---LDITHSMV-MFGSTSKVIGTDDY-ADISGSDVVII   78 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHH---HHHHHHHH-HHTCCCCEEEESCG-GGGTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHH---HHHHhhhh-hcCCCcEEEECCCH-HHhCCCCEEEE
Confidence            3689999999999999999998888 9999998764321100   00000000 00000000011455 67899999999


Q ss_pred             ecC
Q 024297          232 CLS  234 (269)
Q Consensus       232 ~lp  234 (269)
                      +++
T Consensus        79 avg   81 (317)
T 2ewd_A           79 TAS   81 (317)
T ss_dssp             CCC
T ss_pred             eCC
Confidence            985

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=97.32  E-value=0.0019  Score=57.10  Aligned_cols=125  Identities=14%  Similarity=0.034  Sum_probs=84.7

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec---CchHHHHHH
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF---GNIGVELAK  170 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~---G~iG~~~a~  170 (269)
                      .+...+|+|.|.....  +..++  .+|+-++.+.+.+                 ..+.|.+|+++|=   +++.+.++.
T Consensus       108 la~~~~vPVINAG~g~--~~HPt--QaLaDl~Ti~e~~-----------------g~l~gl~va~vGDl~~~rva~Sl~~  166 (291)
T 3d6n_B          108 IVKSLNLRLVNAGDGT--HQHPS--QGLIDFFTIKEHF-----------------GEVKDLRVLYVGDIKHSRVFRSGAP  166 (291)
T ss_dssp             HHHTCSSEEEEEEETT--TBCHH--HHHHHHHHHHHHH-----------------SCCTTCEEEEESCCTTCHHHHHHHH
T ss_pred             HHHhCCCCEEeCccCC--CcCcH--HHHHHHHHHHHHh-----------------CCcCCcEEEEECCCCCCchHHHHHH
Confidence            3455679999944321  44666  6677777776653                 3589999999996   999999999


Q ss_pred             HhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEEecCCCccc---------
Q 024297          171 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQT---------  239 (269)
Q Consensus       171 ~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~~lp~t~~t---------  239 (269)
                      .+..+|++|.++.+..-..             ++     ....+  ...+++++++++|||.. +-...+-         
T Consensus       167 ~~~~~g~~v~~~~P~~~~p-------------~~-----~~~~g~~~~~d~~eav~~aDvvy~-~~~q~er~~~~~~~~~  227 (291)
T 3d6n_B          167 LLNMFGAKIGVCGPKTLIP-------------RD-----VEVFKVDVFDDVDKGIDWADVVIW-LRLQKERQKENYIPSE  227 (291)
T ss_dssp             HHHHTTCEEEEESCGGGSC-------------TT-----GGGGCEEEESSHHHHHHHCSEEEE-CCCCTHHHHTTSSSCH
T ss_pred             HHHHCCCEEEEECCchhCC-------------ch-----HHHCCCEEEcCHHHHhCCCCEEEE-eCcccCccccccchhH
Confidence            9999999999998643211             00     00111  24789999999999999 5533221         


Q ss_pred             -----cCcCCHHHHhhhCCCCcEEEEcc
Q 024297          240 -----VKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       240 -----~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                           ..-+|.+.++ ++|   +|.-+.
T Consensus       228 ~~~~~~y~v~~~~l~-~a~---i~mH~l  251 (291)
T 3d6n_B          228 SSYFKQFGLTKERFE-KVK---LYMHPG  251 (291)
T ss_dssp             HHHHHHHSBCHHHHT-TCC---CEECSS
T ss_pred             HHHHhhcCcCHHHHH-hcc---cccCCC
Confidence                 2356777777 665   555443

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=97.32  E-value=0.00061  Score=61.37  Aligned_cols=137  Identities=12%  Similarity=0.061  Sum_probs=92.0

Q ss_pred             HhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhc-HHHHHHHHHhCCCCCCccccccCCEEEEEecC--chHHHHHHH
Q 024297           95 ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK-QNEMRMAIEQKKLGVPTGETLLGKTVFILGFG--NIGVELAKR  171 (269)
Q Consensus        95 ~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~-~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G--~iG~~~a~~  171 (269)
                      +...+|+|.|.-+.   +..++  .+|+-++.+.++ +                |..+.|.+|+++|=|  ++++.++..
T Consensus       117 A~~~~vPVINa~~~---~~HPt--Q~LaDl~Ti~e~~~----------------g~~l~gl~ia~vGD~~~~va~Sl~~~  175 (333)
T 1duv_G          117 AEYASVPVWNGLTN---EFHPT--QLLADLLTMQEHLP----------------GKAFNEMTLVYAGDARNNMGNSMLEA  175 (333)
T ss_dssp             HHHHSSCEEESCCS---SCCHH--HHHHHHHHHHHHST----------------TCCGGGCEEEEESCTTSHHHHHHHHH
T ss_pred             HHhCCCCeEcCCCC---CCCch--HHHHHHHHHHHHhc----------------CCCCCCcEEEEECCCccchHHHHHHH
Confidence            34457999997653   55676  666666766654 2                226899999999975  999999999


Q ss_pred             hccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHHhhCCEEEEecCCC-----c--c--
Q 024297          172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKADVVVCCLSLN-----K--Q--  238 (269)
Q Consensus       172 l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aDvvv~~lp~t-----~--~--  238 (269)
                      +..+|++|.++.+..-.......   ...      .+.....+    ...+++++++++|||....=..     +  .  
T Consensus       176 ~~~~G~~v~~~~P~~~~p~~~~~---~~~------~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~~~~~~~er  246 (333)
T 1duv_G          176 AALTGLDLRLVAPQACWPEAALV---TEC------RALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAER  246 (333)
T ss_dssp             HHHHCCEEEEECCGGGCCCHHHH---HHH------HHHHHHTTCEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHH
T ss_pred             HHHcCCEEEEECCcccCCCHHHH---HHH------HHHHHHcCCeEEEEECHHHHhCCCCEEEeCCccccCccccchHHH
Confidence            99999999999864322110000   000      00000111    2478999999999999854310     0  0  


Q ss_pred             ----ccCcCCHHHHhhhC-CCCcEEEEcc
Q 024297          239 ----TVKLCSSSLSSKSM-FFATYVVFMF  262 (269)
Q Consensus       239 ----t~~li~~~~l~~~m-k~ga~lIN~~  262 (269)
                          ...-+|.+.++ .+ |++++|.-+.
T Consensus       247 ~~~~~~y~v~~~ll~-~a~~~~ai~mHcL  274 (333)
T 1duv_G          247 IALLREYQVNSKMMQ-LTGNPEVKFLHCL  274 (333)
T ss_dssp             HHHHGGGCBCHHHHH-TTCCTTCEEEECS
T ss_pred             HHHhhccccCHHHHH-hccCCCcEEECCC
Confidence                23578999999 99 9999998765

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=97.30  E-value=0.0012  Score=60.01  Aligned_cols=137  Identities=15%  Similarity=0.088  Sum_probs=93.0

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecC--chHHHHHHH
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG--NIGVELAKR  171 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G--~iG~~~a~~  171 (269)
                      .+...+|+|.|.-+.   +..++  .+|+-++.+.+.+                 ..+.|.+|+++|=|  ++++.++..
T Consensus       139 lA~~s~vPVINa~~~---~~HPt--QaLaDl~Ti~E~~-----------------g~l~gl~va~vGD~~~rva~Sl~~~  196 (359)
T 2w37_A          139 LARDSGVPVWNGLTD---EWHPT--QMLADFMTVKENF-----------------GKLQGLTLTFMGDGRNNVANSLLVT  196 (359)
T ss_dssp             HHHHSSSCEEEEECS---SCCHH--HHHHHHHHHHHHH-----------------SCCTTCEEEEESCTTSHHHHHHHHH
T ss_pred             HHHhCCCCEEcCCCC---CCCcc--HHHHHHHHHHHHh-----------------CCcCCeEEEEECCCccchHHHHHHH
Confidence            345668999997654   55676  6677777776653                 35899999999975  999999999


Q ss_pred             hccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHHhhCCEEEEecCC--Cc----c---
Q 024297          172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKADVVVCCLSL--NK----Q---  238 (269)
Q Consensus       172 l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aDvvv~~lp~--t~----~---  238 (269)
                      +..+|++|.++.+..-.......   ...      .+.....+    ...+++++++++|||....=.  ..    +   
T Consensus       197 ~~~lG~~v~~~~P~~l~p~~~~~---~~~------~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~ee~~er~~  267 (359)
T 2w37_A          197 GAILGVNIHIVAPKALFPTEETQ---NIA------KGFAEKSGAKLVITDDLDEGLKGSNVVYTDVWVSMGESNWEERVK  267 (359)
T ss_dssp             HHHHTCEEEEECCGGGSCCHHHH---HHH------HHHHHHHTCCEEEESCHHHHHTTCSEEEECCSCCTTCTTHHHHHH
T ss_pred             HHHcCCEEEEECCccccCCHHHH---HHH------HHHHHHcCCeEEEEeCHHHHhcCCCEEEEcccccccccchHHHHH
Confidence            99999999999864322110000   000      00000111    247899999999999985431  00    0   


Q ss_pred             --ccCcCCHHHHhhhCC---CCcEEEEcc
Q 024297          239 --TVKLCSSSLSSKSMF---FATYVVFMF  262 (269)
Q Consensus       239 --t~~li~~~~l~~~mk---~ga~lIN~~  262 (269)
                        ...-+|.+.++ .+|   ++++|.-+.
T Consensus       268 ~~~~y~v~~ell~-~ak~~~~dai~MHcL  295 (359)
T 2w37_A          268 ELTPYQVNMEAMK-KTGTPDDQLIFMHCL  295 (359)
T ss_dssp             HHGGGCBCHHHHH-TTCCCGGGCEEEECS
T ss_pred             HhhccccCHHHHH-hhCCCCCCEEEECCC
Confidence              24677999999 889   899998765

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.30  E-value=0.00026  Score=63.72  Aligned_cols=77  Identities=16%  Similarity=0.083  Sum_probs=50.9

Q ss_pred             CEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccC---CCCCHHHHHhhCCEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASKADVV  229 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~aDvv  229 (269)
                      .+|+|||.|.+|..+|..|...|. +|..+|++.+.......   +.  .+. .. ......   ...++++.+++||+|
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~---~l--~~~-~~-~~~~~~~i~~t~d~~ea~~~aDiV   82 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKAL---DL--SHV-TS-VVDTNVSVRAEYSYEAALTGADCV   82 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHH---HH--HHH-HH-HTTCCCCEEEECSHHHHHTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHH---HH--Hhh-hh-ccCCCCEEEEeCCHHHHhCCCCEE
Confidence            589999999999999999998887 99999987643211000   00  000 00 000011   126788889999999


Q ss_pred             EEec--CCCc
Q 024297          230 VCCL--SLNK  237 (269)
Q Consensus       230 v~~l--p~t~  237 (269)
                      +++.  |..+
T Consensus        83 i~a~g~p~~~   92 (331)
T 1pzg_A           83 IVTAGLTKVP   92 (331)
T ss_dssp             EECCSCSSCT
T ss_pred             EEccCCCCCC
Confidence            9998  5443

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.30  E-value=8.3e-05  Score=64.42  Aligned_cols=113  Identities=19%  Similarity=0.251  Sum_probs=67.4

Q ss_pred             HHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCcccccccc-----chhh--------
Q 024297          135 RMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQS-----SALA--------  200 (269)
Q Consensus       135 ~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~-----~~~~--------  200 (269)
                      .+++.-..|.......|.+++|.|+|.|.+|..+++.|...|. +++.+|...-.. .....+     .+..        
T Consensus        10 ~Rq~~l~~~g~~~q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~-sNL~Rq~l~~~~diG~~Ka~~~~   88 (251)
T 1zud_1           10 SRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHL-SNLQRQILFTTEDIDRPKSQVSQ   88 (251)
T ss_dssp             HHHHTSTTTHHHHHHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCG-GGTTTCTTCCGGGTTSBHHHHHH
T ss_pred             hhhcchhhcCHHHHHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCccc-ccCCCCccCChhhCCCHHHHHHH
Confidence            3333334465444467999999999999999999999999998 789987643110 000000     0000        


Q ss_pred             --h--cc-ccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297          201 --V--KN-GIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS  249 (269)
Q Consensus       201 --~--~~-~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~  249 (269)
                        +  .| +.--.........+++.++++++|+|+.+.. +.+++..+++...+
T Consensus        89 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~  141 (251)
T 1zud_1           89 QRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVA  141 (251)
T ss_dssp             HHHHHHCTTSEEEEECSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHH
Confidence              0  00 0000000000112356788999999999987 66778888775544

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.28  E-value=0.00021  Score=64.57  Aligned_cols=66  Identities=11%  Similarity=0.162  Sum_probs=48.4

Q ss_pred             CEEEEEecCchHHHHHHHhccC-CCEEE-EEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHH--hhCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA--SKAD  227 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell--~~aD  227 (269)
                      .+|||||+|.||+..++.++.. +++|. ++|++..+..                 ......+  .+.++++++  .+.|
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~-----------------~~~~~~g~~~~~~~~~~l~~~~~D   68 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKRE-----------------KFGKRYNCAGDATMEALLAREDVE   68 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHH-----------------HHHHHHTCCCCSSHHHHHHCSSCC
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHH-----------------HHHHHcCCCCcCCHHHHhcCCCCC
Confidence            4899999999999999999987 88866 6677554311                 1111111  357899999  5699


Q ss_pred             EEEEecCCC
Q 024297          228 VVVCCLSLN  236 (269)
Q Consensus       228 vvv~~lp~t  236 (269)
                      +|++++|..
T Consensus        69 ~V~i~tp~~   77 (354)
T 3db2_A           69 MVIITVPND   77 (354)
T ss_dssp             EEEECSCTT
T ss_pred             EEEEeCChH
Confidence            999999854

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=97.27  E-value=0.002  Score=58.39  Aligned_cols=153  Identities=14%  Similarity=0.029  Sum_probs=91.2

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec-CchHHHHHHHh
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF-GNIGVELAKRL  172 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~-G~iG~~~a~~l  172 (269)
                      .+...+|+|.|..+.   +..++  .+|+-++.+.+.+......    .-.......+.|.+|+++|= -++.+.++..+
T Consensus       138 lA~~s~vPVINag~d---~~HPt--QaLaDl~TI~E~~G~~~~~----~~~~~~~~~l~glkva~vGD~~nva~Sl~~~l  208 (353)
T 3sds_A          138 LAKHSSVPVINALCD---TFHPL--QAIADFLTIHESFASQSAT----HGTHPSSLGLEGLKIAWVGDANNVLFDLAIAA  208 (353)
T ss_dssp             HHHHCSSCEEEEECS---SCCHH--HHHHHHHHHHHHTC------------CTTCCSCTTCEEEEESCCCHHHHHHHHHH
T ss_pred             HHhhCCCCEEECCCC---CCCcH--HHHHHHHHHHHHhCCCccc----ccccccccccCCCEEEEECCCchHHHHHHHHH
Confidence            345678999998653   34566  5666666666543210000    00112334589999999994 46888889999


Q ss_pred             ccCCCEEEEEcCCCCCccccccccc-hhh--hccccccccccccCCCCCHHHHHhhCCEEEEec--CCCcc---------
Q 024297          173 RPFGVKIIATKRSWASHSQVSCQSS-ALA--VKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL--SLNKQ---------  238 (269)
Q Consensus       173 ~~~G~~V~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l--p~t~~---------  238 (269)
                      ..+|++|.++.+..-.......... ..+  ..+|      .......+++++++++|||..-.  +...+         
T Consensus       209 ~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g------~~~~~~~d~~eav~~aDVvytd~w~smg~E~~~~~r~~~  282 (353)
T 3sds_A          209 TKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSP------GNLTQTTVPEVAVKDADVIVTDTWISMGQETEKIKRLEA  282 (353)
T ss_dssp             HHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSC------CCEEEESCHHHHTTTCSEEEECCC--------CHHHHHH
T ss_pred             HHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCC------CeEEEECCHHHHhcCCCEEEeCCccCCchhhHHHHHHHH
Confidence            9999999999875432111000000 000  0000      00012368999999999998753  22111         


Q ss_pred             -ccCcCCHHHHhhh--CCCCcEEEEcc
Q 024297          239 -TVKLCSSSLSSKS--MFFATYVVFMF  262 (269)
Q Consensus       239 -t~~li~~~~l~~~--mk~ga~lIN~~  262 (269)
                       ...-++.+.++ .  +|++++|.-+.
T Consensus       283 ~~~y~vt~ell~-~~~ak~~ai~MHcL  308 (353)
T 3sds_A          283 FKDFKVTSELAK-RGGAKENWKFMHCL  308 (353)
T ss_dssp             TTTCCBCHHHHH-HHTCCTTCEEEECS
T ss_pred             hhCceecHHHHh-hcccCCCcEEECCC
Confidence             12568999999 8  89999998776

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.25  E-value=0.00011  Score=65.34  Aligned_cols=75  Identities=20%  Similarity=0.246  Sum_probs=47.5

Q ss_pred             CEEEEEecCchHHHHHHHhccCC--CEEEEEcCCCCCccccccccchhhhcccccccccc-ccC-CCCCHHHHHhhCCEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKG-CHEDIFEFASKADVV  229 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~l~ell~~aDvv  229 (269)
                      ++|+|||.|.||..+|..|...|  .+|..+|++..+......   ++  .++  ..... ... ...++ +.+++||+|
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~---~l--~~~--~~~~~~~~~~~~~d~-~~~~~aDvV   73 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQI---DF--QDA--MANLEAHGNIVINDW-AALADADVV   73 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHH---HH--HHH--GGGSSSCCEEEESCG-GGGTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHH---HH--Hhh--hhhcCCCeEEEeCCH-HHhCCCCEE
Confidence            48999999999999999998778  699999987543111000   00  000  00000 000 01345 678899999


Q ss_pred             EEecCCC
Q 024297          230 VCCLSLN  236 (269)
Q Consensus       230 v~~lp~t  236 (269)
                      ++++|..
T Consensus        74 iiav~~~   80 (309)
T 1hyh_A           74 ISTLGNI   80 (309)
T ss_dssp             EECCSCG
T ss_pred             EEecCCc
Confidence            9999853

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=97.23  E-value=0.0024  Score=57.44  Aligned_cols=152  Identities=11%  Similarity=0.043  Sum_probs=95.5

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecC--chHHHHHHH
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG--NIGVELAKR  171 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G--~iG~~~a~~  171 (269)
                      .+...+|+|.|..+.   +..++  .+|+-++.+.+.+..          .......+.|.+|+++|=+  ++.+.++..
T Consensus       117 lA~~~~vPVINag~~---~~HPt--QaLaDl~Ti~e~~g~----------~~~~~~~l~gl~va~vGD~~~~va~Sl~~~  181 (328)
T 3grf_A          117 MAQHASVPCINALDD---FGHPL--QMVCDFMTIKEKFTA----------AGEFSNGFKGIKFAYCGDSMNNVTYDLMRG  181 (328)
T ss_dssp             HHHHCSSCEEESSCS---SCCHH--HHHHHHHHHHHHHHH----------TTCCTTTGGGCCEEEESCCSSHHHHHHHHH
T ss_pred             HHHhCCCCEEeCCCC---CCCcH--HHHHHHHHHHHHhCC----------ccccccccCCcEEEEeCCCCcchHHHHHHH
Confidence            345668999998664   45666  667777777665421          0111246999999999965  899999999


Q ss_pred             hccCCCEEEEEcCCCCC--ccccc-cccchhhhc--cccccccccccCCCCCHHHHHhhCCEEEEec----CCCcc----
Q 024297          172 LRPFGVKIIATKRSWAS--HSQVS-CQSSALAVK--NGIIDDLVDEKGCHEDIFEFASKADVVVCCL----SLNKQ----  238 (269)
Q Consensus       172 l~~~G~~V~~~~~~~~~--~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l----p~t~~----  238 (269)
                      +..+|++|.++.+..-.  ..... ..-..++-.  +|.      ......+++++++++|||...+    ...++    
T Consensus       182 ~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~------~v~~~~d~~eav~~aDvvytd~W~sm~iq~er~~~  255 (328)
T 3grf_A          182 CALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGG------SIKIFHDCKKGCEGVDVVYTDSWMSYHITKEQKEA  255 (328)
T ss_dssp             HHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCC------EEEEESSHHHHHTTCSEEEECCCC--------CCT
T ss_pred             HHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCC------eEEEEcCHHHHhcCCCEEEecCccccCCcHHHHHH
Confidence            99999999999864322  10000 000000000  110      0012468999999999998742    11111    


Q ss_pred             -----ccCcCCHHHHhhhCCCCcEEEEcc---CCCCc
Q 024297          239 -----TVKLCSSSLSSKSMFFATYVVFMF---QGHGV  267 (269)
Q Consensus       239 -----t~~li~~~~l~~~mk~ga~lIN~~---RG~~v  267 (269)
                           ...-+|.+.++ .+|++++|.-+.   ||.=|
T Consensus       256 ~~~~~~~y~vt~~~l~-~a~~~ai~mH~lPa~Rg~EI  291 (328)
T 3grf_A          256 RLKVLTPFQVDDAVMA-VTSKRSIFMNCLPATRGEEQ  291 (328)
T ss_dssp             HHHHHGGGCBCHHHHT-TSCTTCEEEECSCCCTTTTB
T ss_pred             HHHHhcCCCCCHHHHH-hcCCCCEEECCCCCCCCCcc
Confidence                 13568999999 999999998876   66533

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.23  E-value=0.00015  Score=67.95  Aligned_cols=77  Identities=16%  Similarity=0.248  Sum_probs=53.6

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccc-------cccccc---cC---CCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII-------DDLVDE---KG---CHED  218 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~---~~---~~~~  218 (269)
                      .-.+|+|||+|-+|..+|..+...|++|+++|.+..+-..         +..|..       ++...+   .+   ...+
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~---------ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~   90 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVER---------LRAGRPHIYEPGLEEALGRALSSGRLSFAES   90 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHH---------HHTTCCSSCCTTHHHHHHHHHHTTCEEECSS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHH---------HHCCCCCCCCCCHHHHHHHHHHcCCeeEEcC
Confidence            3468999999999999999999999999999987543111         111110       111111   11   2357


Q ss_pred             HHHHHhhCCEEEEecCCCcc
Q 024297          219 IFEFASKADVVVCCLSLNKQ  238 (269)
Q Consensus       219 l~ell~~aDvvv~~lp~t~~  238 (269)
                      .++.++.||++++|+| ||.
T Consensus        91 ~~~ai~~ad~~~I~Vp-TP~  109 (444)
T 3vtf_A           91 AEEAVAATDATFIAVG-TPP  109 (444)
T ss_dssp             HHHHHHTSSEEEECCC-CCB
T ss_pred             HHHHHhcCCceEEEec-CCC
Confidence            8899999999999999 553

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.23  E-value=0.00024  Score=62.80  Aligned_cols=67  Identities=15%  Similarity=0.173  Sum_probs=48.5

Q ss_pred             CCEEEEEecCchHHH-HHHHhcc-CCCEEE-EEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCC
Q 024297          153 GKTVFILGFGNIGVE-LAKRLRP-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  227 (269)
Q Consensus       153 g~~vgIiG~G~iG~~-~a~~l~~-~G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  227 (269)
                      -.+|||||+|.||+. .++.+.. -+++|. ++|++..+..                 .....++  .+.++++++.+.|
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~a~~~~~~~~~~~~~ll~~~D   68 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKRE-----------------KICSDYRIMPFDSIESLAKKCD   68 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHH-----------------HHHHHHTCCBCSCHHHHHTTCS
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHH-----------------HHHHHcCCCCcCCHHHHHhcCC
Confidence            368999999999996 8888876 478877 6777654311                 1111111  2578999999999


Q ss_pred             EEEEecCCC
Q 024297          228 VVVCCLSLN  236 (269)
Q Consensus       228 vvv~~lp~t  236 (269)
                      +|++++|..
T Consensus        69 ~V~i~tp~~   77 (308)
T 3uuw_A           69 CIFLHSSTE   77 (308)
T ss_dssp             EEEECCCGG
T ss_pred             EEEEeCCcH
Confidence            999998843

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.22  E-value=0.00021  Score=64.91  Aligned_cols=98  Identities=18%  Similarity=0.178  Sum_probs=64.9

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      .|++|.|+|.|.||+.+++.++.+|++|++++++..+.......       -| .+..++ ....+.+.++....|+|+.
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~-------lG-a~~v~~-~~~~~~~~~~~~~~D~vid  257 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKN-------FG-ADSFLV-SRDQEQMQAAAGTLDGIID  257 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHT-------SC-CSEEEE-TTCHHHHHHTTTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-------cC-CceEEe-ccCHHHHHHhhCCCCEEEE
Confidence            68899999999999999999999999999999876542110000       00 011111 0011123444456899999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      ++.....     -...++ .|+++..+|+++-.
T Consensus       258 ~~g~~~~-----~~~~~~-~l~~~G~iv~~g~~  284 (366)
T 1yqd_A          258 TVSAVHP-----LLPLFG-LLKSHGKLILVGAP  284 (366)
T ss_dssp             CCSSCCC-----SHHHHH-HEEEEEEEEECCCC
T ss_pred             CCCcHHH-----HHHHHH-HHhcCCEEEEEccC
Confidence            9874321     245778 89999999998753

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.21  E-value=6.6e-05  Score=66.78  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=30.5

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      ++|+|||.|.||..+|..|. .|.+|++++|+..
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~   35 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQE   35 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHH
Confidence            68999999999999999999 9999999998753

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.20  E-value=0.00017  Score=64.76  Aligned_cols=66  Identities=15%  Similarity=0.180  Sum_probs=48.3

Q ss_pred             CEEEEEecCchHHHHHHHhccC-CCEEE-EEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHh--hCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--KAD  227 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--~aD  227 (269)
                      .+|||||+|.||+..++.+... +++|+ ++|++..+..                 .....++  .+.++++++.  +.|
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~a~~~g~~~~~~~~~~l~~~~~D   67 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQ-----------------RLAEANGAEAVASPDEVFARDDID   67 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHH-----------------HHHHTTTCEEESSHHHHTTCSCCC
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHH-----------------HHHHHcCCceeCCHHHHhcCCCCC
Confidence            4899999999999999998876 78877 5776554311                 1111111  3478999998  899


Q ss_pred             EEEEecCCC
Q 024297          228 VVVCCLSLN  236 (269)
Q Consensus       228 vvv~~lp~t  236 (269)
                      +|++++|..
T Consensus        68 ~V~i~tp~~   76 (344)
T 3euw_A           68 GIVIGSPTS   76 (344)
T ss_dssp             EEEECSCGG
T ss_pred             EEEEeCCch
Confidence            999999843

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.19  E-value=0.00023  Score=62.35  Aligned_cols=91  Identities=14%  Similarity=0.113  Sum_probs=60.7

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccC-CC-CCHHHHHhhCCE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CH-EDIFEFASKADV  228 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~l~ell~~aDv  228 (269)
                      .++++.|||.|.+|++++..|...|+ +|++++|+.++...                 +..... .. .++.  +.++|+
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~-----------------la~~~~~~~~~~~~--~~~~Di  178 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQY-----------------LAALYGYAYINSLE--NQQADI  178 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHH-----------------HHHHHTCEEESCCT--TCCCSE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH-----------------HHHHcCCccchhhh--cccCCE
Confidence            46899999999999999999999998 79999998654211                 111110 00 1122  468999


Q ss_pred             EEEecCCCcccc-----CcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          229 VVCCLSLNKQTV-----KLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       229 vv~~lp~t~~t~-----~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      ||++.|......     -.+..+    .++++.+++++.-.+
T Consensus       179 vInaTp~gm~~~~~~~~~~~~~~----~l~~~~~v~DlvY~P  216 (271)
T 1npy_A          179 LVNVTSIGMKGGKEEMDLAFPKA----FIDNASVAFDVVAMP  216 (271)
T ss_dssp             EEECSSTTCTTSTTTTSCSSCHH----HHHHCSEEEECCCSS
T ss_pred             EEECCCCCccCccccCCCCCCHH----HcCCCCEEEEeecCC
Confidence            999999654211     124433    345588899887644

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.19  E-value=0.0002  Score=61.00  Aligned_cols=98  Identities=14%  Similarity=0.084  Sum_probs=61.7

Q ss_pred             ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       147 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      ..-++.|++|.|||.|.+|...++.|...|++|+++++...+......       ..+.+ .....  .+  -.+.+..+
T Consensus        25 ifl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~-------~~~~i-~~i~~--~~--~~~dL~~a   92 (223)
T 3dfz_A           25 VMLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWE-------AKGQL-RVKRK--KV--GEEDLLNV   92 (223)
T ss_dssp             EEECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHH-------HTTSC-EEECS--CC--CGGGSSSC
T ss_pred             cEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH-------HcCCc-EEEEC--CC--CHhHhCCC
Confidence            446899999999999999999999999999999999976443211100       01111 01111  11  12446789


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |+|+.+.. .+    -+|..... ..+ ..++||+..
T Consensus        93 dLVIaAT~-d~----~~N~~I~~-~ak-~gi~VNvvD  122 (223)
T 3dfz_A           93 FFIVVATN-DQ----AVNKFVKQ-HIK-NDQLVNMAS  122 (223)
T ss_dssp             SEEEECCC-CT----HHHHHHHH-HSC-TTCEEEC--
T ss_pred             CEEEECCC-CH----HHHHHHHH-HHh-CCCEEEEeC
Confidence            98887743 22    33554444 566 667888864

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.18  E-value=0.00021  Score=63.86  Aligned_cols=66  Identities=21%  Similarity=0.246  Sum_probs=48.0

Q ss_pred             CEEEEEecCchHHHHHHHhccC-CCEEE-EEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHh--hCCE
Q 024297          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS--KADV  228 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~--~aDv  228 (269)
                      .+|||||+|.||+..++.+... +++|. ++|++..+..                 ......+ .+.++++++.  +.|+
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~~D~   66 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAE-----------------AIAGAYGCEVRTIDAIEAAADIDA   66 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHH-----------------HHHHHTTCEECCHHHHHHCTTCCE
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHH-----------------HHHHHhCCCcCCHHHHhcCCCCCE
Confidence            4899999999999999999875 88877 5777554311                 0111111 1578999998  8999


Q ss_pred             EEEecCCC
Q 024297          229 VVCCLSLN  236 (269)
Q Consensus       229 vv~~lp~t  236 (269)
                      |++++|..
T Consensus        67 V~i~tp~~   74 (331)
T 4hkt_A           67 VVICTPTD   74 (331)
T ss_dssp             EEECSCGG
T ss_pred             EEEeCCch
Confidence            99998843

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.16  E-value=0.0001  Score=61.86  Aligned_cols=76  Identities=16%  Similarity=0.121  Sum_probs=48.2

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH-HhhCCEEEEe
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDvvv~~  232 (269)
                      ++|.|+|+|.+|+.+|+.|...|.+|+++++++.........       .|. .-..........+.++ +.++|+|+++
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~-------~~~-~~i~gd~~~~~~l~~a~i~~ad~vi~~   72 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK-------LKA-TIIHGDGSHKEILRDAEVSKNDVVVIL   72 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH-------SSS-EEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH-------cCC-eEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence            368999999999999999999999999999876432110000       000 0000011111234444 6789999999


Q ss_pred             cCCCc
Q 024297          233 LSLNK  237 (269)
Q Consensus       233 lp~t~  237 (269)
                      +|...
T Consensus        73 ~~~d~   77 (218)
T 3l4b_C           73 TPRDE   77 (218)
T ss_dssp             CSCHH
T ss_pred             cCCcH
Confidence            88543

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*

Probab=97.16  E-value=0.0034  Score=56.23  Aligned_cols=128  Identities=7%  Similarity=-0.039  Sum_probs=90.0

Q ss_pred             HhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCcc-ccccCCEEEE-----EecCchHHHH
Q 024297           95 ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTG-ETLLGKTVFI-----LGFGNIGVEL  168 (269)
Q Consensus        95 ~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~-~~l~g~~vgI-----iG~G~iG~~~  168 (269)
                      ++..+|+|.|..+.   +..++  .+|+-++.+.+.+                | ..+. .+|++     +|=+++.+.+
T Consensus       131 A~~~~vPVINa~~~---~~HPt--QaLaDl~Ti~e~~----------------g~~~l~-l~ia~a~~~~vGD~rva~Sl  188 (324)
T 1js1_X          131 IQHSGRPVFSMEAA---TRHPL--QSFADLITIEEYK----------------KTARPK-VVMTWAPHPRPLPQAVPNSF  188 (324)
T ss_dssp             HHHSSSCEEESSCS---SCCHH--HHHHHHHHHHHHC----------------SSSSCE-EEEECCCCSSCCCSHHHHHH
T ss_pred             HhhCCCCEEECCCC---CCCcH--HHHHHHHHHHHHc----------------CCCCee-EEEEEEcccccCCcchHHHH
Confidence            44567999997663   45666  6666666666542                2 1467 89999     9999999999


Q ss_pred             HHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCC--------c---
Q 024297          169 AKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLN--------K---  237 (269)
Q Consensus       169 a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t--------~---  237 (269)
                      +..+..+|++|.++.+..-....                ..........+++++++++|||....=-.        +   
T Consensus       189 ~~~~~~~G~~v~~~~P~~~~~~~----------------~~~~~~~~~~d~~eav~~aDvvy~~~w~s~g~~~~~~~~~r  252 (324)
T 1js1_X          189 AEWMNATDYEFVITHPEGYELDP----------------KFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILST  252 (324)
T ss_dssp             HHHHHTSSSEEEEECCTTCCCCH----------------HHHTTCEEESCHHHHHTTCSEEEECCCCCCSTTCTTCCCCC
T ss_pred             HHHHHHCCCEEEEeCCcccCCCh----------------hhccceEEECCHHHHhCCCCEEEecCcccCCCccccchHHH
Confidence            99999999999999874432110                11111112478999999999999843200        0   


Q ss_pred             cccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          238 QTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       238 ~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ....-++.+.++ ++| +++|.-+.
T Consensus       253 ~~~y~vt~e~l~-~a~-~ai~MHcL  275 (324)
T 1js1_X          253 DRNWTVGDRQMA-VTN-NAYFMHCL  275 (324)
T ss_dssp             CTTSSBCHHHHT-TSS-SCEEECCS
T ss_pred             hcCcccCHHHHH-hcC-CcEEECCC
Confidence            124678999999 889 99998776

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.14  E-value=0.00045  Score=61.50  Aligned_cols=76  Identities=16%  Similarity=0.187  Sum_probs=47.2

Q ss_pred             CEEEEEecCchHHHHHHHhcc--CCCEEEEEcCCCCCccccccccchhhhcccccccc-ccccCCCCCHHHHHhhCCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL-VDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~--~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ell~~aDvvv  230 (269)
                      .+|+|||.|.+|..+|..|..  +|.+|..+|++..+... ...  +  ..+...... ........++++ ++.||+|+
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~-~~~--~--l~~~~~~~~~~~~i~~t~d~~~-l~~aDvVi   74 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQG-KAL--D--MYESGPVGLFDTKVTGSNDYAD-TANSDIVI   74 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHH-HHH--H--HHTTHHHHTCCCEEEEESCGGG-GTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHH-HHH--h--HHhhhhcccCCcEEEECCCHHH-HCCCCEEE
Confidence            379999999999999999885  58999999997643211 000  0  000000000 000001145666 89999999


Q ss_pred             EecCC
Q 024297          231 CCLSL  235 (269)
Q Consensus       231 ~~lp~  235 (269)
                      +++|.
T Consensus        75 iav~~   79 (310)
T 1guz_A           75 ITAGL   79 (310)
T ss_dssp             ECCSC
T ss_pred             EeCCC
Confidence            99983

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=97.14  E-value=0.00039  Score=63.04  Aligned_cols=64  Identities=16%  Similarity=0.176  Sum_probs=47.3

Q ss_pred             CEEEEEecCchHHHHHHHhccC-CCEEEE-EcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHh--hCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--KAD  227 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--~aD  227 (269)
                      .+|||||+|.||+..++.++.. +++|.+ +|++..+..                  .....+  .+.++++++.  +.|
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~------------------~a~~~g~~~~~~~~~ll~~~~~D   67 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKRE------------------AAAQKGLKIYESYEAVLADEKVD   67 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHH------------------HHHTTTCCBCSCHHHHHHCTTCC
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHH------------------HHHhcCCceeCCHHHHhcCCCCC
Confidence            5899999999999999998877 788765 566543311                  011111  3578999998  789


Q ss_pred             EEEEecCC
Q 024297          228 VVVCCLSL  235 (269)
Q Consensus       228 vvv~~lp~  235 (269)
                      +|++++|.
T Consensus        68 ~V~i~tp~   75 (359)
T 3e18_A           68 AVLIATPN   75 (359)
T ss_dssp             EEEECSCG
T ss_pred             EEEEcCCc
Confidence            99999884

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=97.14  E-value=0.0018  Score=57.65  Aligned_cols=136  Identities=11%  Similarity=0.080  Sum_probs=89.7

Q ss_pred             hHhcCCcEEEecCC-CCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec---CchHHHHH
Q 024297           94 AATRCGIKVARIPG-DVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF---GNIGVELA  169 (269)
Q Consensus        94 ~~~~~gI~v~n~~~-~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~---G~iG~~~a  169 (269)
                      .+...+|+|.|..+ .   +..++  .+|+-++.+.+++                 ..+.|.||+++|=   |++.+.++
T Consensus       113 lA~~~~vPVINag~g~---~~HPt--Q~LaDl~Ti~e~~-----------------g~l~glkva~vGD~~~~rva~Sl~  170 (306)
T 4ekn_B          113 ASEYSQVPIINAGDGS---NQHPT--QTLLDLYTIMREI-----------------GRIDGIKIAFVGDLKYGRTVHSLV  170 (306)
T ss_dssp             HHHHCSSCEEESCSSS---SCCHH--HHHHHHHHHHHHH-----------------SCSTTCEEEEESCTTTCHHHHHHH
T ss_pred             HHHhCCCCEEeCCCCC---CcCcH--HHHHHHHHHHHHh-----------------CCcCCCEEEEEcCCCCCcHHHHHH
Confidence            34556899999853 3   44666  6666777776653                 3589999999996   58999999


Q ss_pred             HHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHHhhCCEEEEecCCC------cc
Q 024297          170 KRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKADVVVCCLSLN------KQ  238 (269)
Q Consensus       170 ~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aDvvv~~lp~t------~~  238 (269)
                      ..+..+ |++|.++.+..-......             .+...+.+    ...+++++++++|||....--.      .+
T Consensus       171 ~~~~~~~G~~v~~~~P~~~~~~~~~-------------~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~~q~er~~~~~e  237 (306)
T 4ekn_B          171 YALSLFENVEMYFVSPKELRLPKDI-------------IEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQKERFPDPNE  237 (306)
T ss_dssp             HHHHTSSSCEEEEECCGGGCCCHHH-------------HHHHHHTTCCEEEESCGGGCCTTCSEEEECCCCGGGCCSHHH
T ss_pred             HHHHhcCCCEEEEECCcccccCHHH-------------HHHHHHcCCEEEEEcCHHHHhcCCCEEEeCCcccccCCCHHH
Confidence            999999 999999986432110000             00011111    2368889999999998753210      11


Q ss_pred             c-----cCcCCHHHHhhhCCCCcEEEEcc-CCCCc
Q 024297          239 T-----VKLCSSSLSSKSMFFATYVVFMF-QGHGV  267 (269)
Q Consensus       239 t-----~~li~~~~l~~~mk~ga~lIN~~-RG~~v  267 (269)
                      .     ..-+|.+.++ .  ++++|.-+. ||.=|
T Consensus       238 ~~~~~~~y~v~~~~l~-~--~~ai~mH~lPRg~EI  269 (306)
T 4ekn_B          238 YEKVKGSYKIKREYVE-G--KKFIIMHPLPRVDEI  269 (306)
T ss_dssp             HHHHHHHHCBCHHHHT-T--CCCEEECCSCCSSSB
T ss_pred             HHHhccCcEECHHHHc-C--CCCEEECCCCCCCee
Confidence            1     2557888888 5  788887665 66533

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.13  E-value=0.00021  Score=64.54  Aligned_cols=66  Identities=18%  Similarity=0.244  Sum_probs=48.0

Q ss_pred             CCEEEEEecCchHHHHHHHhccC--CCEEE-EEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHh--h
Q 024297          153 GKTVFILGFGNIGVELAKRLRPF--GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--K  225 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~--G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--~  225 (269)
                      -.+|||||+|.||+..++.+...  +++|. ++|++..+...                 .....+  .+.++++++.  +
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~-----------------~~~~~~~~~~~~~~~ll~~~~   75 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKA-----------------AVERTGARGHASLTDMLAQTD   75 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHH-----------------HHHHHCCEEESCHHHHHHHCC
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHH-----------------HHHHcCCceeCCHHHHhcCCC
Confidence            35899999999999999999876  78866 67776543111                 111111  3478999998  7


Q ss_pred             CCEEEEecCC
Q 024297          226 ADVVVCCLSL  235 (269)
Q Consensus       226 aDvvv~~lp~  235 (269)
                      .|+|++++|.
T Consensus        76 ~D~V~i~tp~   85 (354)
T 3q2i_A           76 ADIVILTTPS   85 (354)
T ss_dssp             CSEEEECSCG
T ss_pred             CCEEEECCCc
Confidence            8999999884

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.13  E-value=0.00027  Score=66.71  Aligned_cols=82  Identities=16%  Similarity=0.251  Sum_probs=51.3

Q ss_pred             ccccccCCEEEEEecCchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh
Q 024297          147 TGETLLGKTVFILGFGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK  225 (269)
Q Consensus       147 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  225 (269)
                      .+.++.+++|+|+|.|.+|+.+++.|... |.+|++++|+..+.......       .+ +..........+++.+++++
T Consensus        17 ~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~-------~~-~~~~~~D~~d~~~l~~~l~~   88 (467)
T 2axq_A           17 IEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKP-------SG-SKAISLDVTDDSALDKVLAD   88 (467)
T ss_dssp             ------CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG-------GT-CEEEECCTTCHHHHHHHHHT
T ss_pred             cccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh-------cC-CcEEEEecCCHHHHHHHHcC
Confidence            34678899999999999999999999987 78999999975442110000       00 00000011122357788899


Q ss_pred             CCEEEEecCCC
Q 024297          226 ADVVVCCLSLN  236 (269)
Q Consensus       226 aDvvv~~lp~t  236 (269)
                      +|+||+++|..
T Consensus        89 ~DvVIn~tp~~   99 (467)
T 2axq_A           89 NDVVISLIPYT   99 (467)
T ss_dssp             SSEEEECSCGG
T ss_pred             CCEEEECCchh
Confidence            99999999854

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.11  E-value=0.0003  Score=62.97  Aligned_cols=75  Identities=17%  Similarity=0.199  Sum_probs=46.9

Q ss_pred             CEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCCccccccccchhhhcccccccccccc-CCCCCHHHHHhhCCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCHEDIFEFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDvvv  230 (269)
                      ++|+|||.|.||..+|..|...|.  +|..+|++........ .  .+  .++.  ...... ....+ .+.++.||+|+
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~-~--~l--~~~~--~~~~~~~i~~~d-~~~~~~aDvVi   72 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDA-L--DL--IHGT--PFTRRANIYAGD-YADLKGSDVVI   72 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHH-H--HH--HHHG--GGSCCCEEEECC-GGGGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHH-H--HH--Hhhh--hhcCCcEEEeCC-HHHhCCCCEEE
Confidence            479999999999999999998888  9999998753311100 0  00  0000  000000 01123 35578999999


Q ss_pred             EecCCC
Q 024297          231 CCLSLN  236 (269)
Q Consensus       231 ~~lp~t  236 (269)
                      +++|..
T Consensus        73 iav~~~   78 (319)
T 1a5z_A           73 VAAGVP   78 (319)
T ss_dssp             ECCCCC
T ss_pred             EccCCC
Confidence            999853

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.11  E-value=0.00058  Score=61.37  Aligned_cols=74  Identities=18%  Similarity=0.184  Sum_probs=47.8

Q ss_pred             CEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhcccccccc--ccccCCCCCHHHHHhhCCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDL--VDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~aDvvv  230 (269)
                      ++|+|||.|.+|..+|..+...|. +|..+|++........ .  +.  .+. ....  ........++ +.+++||+|+
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~-~--~l--~~~-~~~~~~~~~i~~t~d~-~al~~aD~VI   87 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKA-L--DL--NHC-MALIGSPAKIFGENNY-EYLQNSDVVI   87 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHH-H--HH--HHH-HHHHTCCCCEEEESCG-GGGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHH-H--HH--HhH-hhccCCCCEEEECCCH-HHHCCCCEEE
Confidence            699999999999999999998888 9999999764321100 0  00  000 0000  0000011456 6789999999


Q ss_pred             EecC
Q 024297          231 CCLS  234 (269)
Q Consensus       231 ~~lp  234 (269)
                      ++++
T Consensus        88 ~avg   91 (328)
T 2hjr_A           88 ITAG   91 (328)
T ss_dssp             ECCS
T ss_pred             EcCC
Confidence            9984

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.10  E-value=0.00031  Score=63.10  Aligned_cols=65  Identities=20%  Similarity=0.332  Sum_probs=47.6

Q ss_pred             CEEEEEecCchHHHHHHHhccC-CCEEE-EEcCCCCCccccccccchhhhccccccccccccC---CCCCHHHHHh--hC
Q 024297          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--KA  226 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~a  226 (269)
                      .+|||||+|.||+..++.+... +++|. ++|++..+..                 ......+   .+.++++++.  ++
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~~~~~~~~~~~~~~~~ll~~~~~   65 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLR-----------------EMKEKLGVEKAYKDPHELIEDPNV   65 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHH-----------------HHHHHHTCSEEESSHHHHHHCTTC
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHH-----------------HHHHHhCCCceeCCHHHHhcCCCC
Confidence            4799999999999999999875 78877 5677654311                 1111111   2478999998  89


Q ss_pred             CEEEEecCC
Q 024297          227 DVVVCCLSL  235 (269)
Q Consensus       227 Dvvv~~lp~  235 (269)
                      |+|++++|.
T Consensus        66 D~V~i~tp~   74 (344)
T 3ezy_A           66 DAVLVCSST   74 (344)
T ss_dssp             CEEEECSCG
T ss_pred             CEEEEcCCC
Confidence            999999884

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=97.08  E-value=0.00062  Score=60.78  Aligned_cols=65  Identities=8%  Similarity=0.131  Sum_probs=46.8

Q ss_pred             CEEEEEecCchHHHHHHHhccC-CCEEE-EEcCCCCCccccccccchhhhccccccccccccC---CCCCHHHHHh--hC
Q 024297          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--KA  226 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~a  226 (269)
                      .+|||||+|.||+..++.++.. +++|. ++|++..+...                 .....+   .+.++++++.  +.
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~-----------------~a~~~~~~~~~~~~~~ll~~~~~   68 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQA-----------------FANKYHLPKAYDKLEDMLADESI   68 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC--------------------CCCCSCEESCHHHHHTCTTC
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHH-----------------HHHHcCCCcccCCHHHHhcCCCC
Confidence            5899999999999999988765 56765 56776654211                 111111   2478999998  89


Q ss_pred             CEEEEecCC
Q 024297          227 DVVVCCLSL  235 (269)
Q Consensus       227 Dvvv~~lp~  235 (269)
                      |+|++++|.
T Consensus        69 D~V~i~tp~   77 (329)
T 3evn_A           69 DVIYVATIN   77 (329)
T ss_dssp             CEEEECSCG
T ss_pred             CEEEECCCc
Confidence            999999884

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.08  E-value=0.00033  Score=62.67  Aligned_cols=66  Identities=12%  Similarity=0.048  Sum_probs=48.2

Q ss_pred             CEEEEEecCchHHHHHHHhccC-CCEEE-EEcCCCCCccccccccchhhhcccccccccccc---CCCCCHHHHHh--hC
Q 024297          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK---GCHEDIFEFAS--KA  226 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ell~--~a  226 (269)
                      .+|||||+|.||+..++.++.. +++|. ++|++..+..                 ......   ..+.++++++.  +.
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~~~~~~~~~~~~~~~~ll~~~~~   68 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQ-----------------KMAKELAIPVAYGSYEELCKDETI   68 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHH-----------------HHHHHTTCCCCBSSHHHHHHCTTC
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHH-----------------HHHHHcCCCceeCCHHHHhcCCCC
Confidence            5899999999999999999875 77877 5676654311                 111111   13578999998  89


Q ss_pred             CEEEEecCCC
Q 024297          227 DVVVCCLSLN  236 (269)
Q Consensus       227 Dvvv~~lp~t  236 (269)
                      |+|++++|..
T Consensus        69 D~V~i~tp~~   78 (330)
T 3e9m_A           69 DIIYIPTYNQ   78 (330)
T ss_dssp             SEEEECCCGG
T ss_pred             CEEEEcCCCH
Confidence            9999998843

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=97.06  E-value=0.0008  Score=60.82  Aligned_cols=101  Identities=14%  Similarity=0.198  Sum_probs=53.5

Q ss_pred             EEEEEecCchHHHHHHHhccC-CCEEEEEcC-CCCCccccccccchhhhccc-cccccccccC--CCCCHHHHHhhCCEE
Q 024297          155 TVFILGFGNIGVELAKRLRPF-GVKIIATKR-SWASHSQVSCQSSALAVKNG-IIDDLVDEKG--CHEDIFEFASKADVV  229 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~l~ell~~aDvv  229 (269)
                      +|||+|+|.||+.+++.+... +++|.++.. +.......... .++.+..+ +........+  ...++++++.++|+|
T Consensus         3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~-~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV   81 (340)
T 1b7g_O            3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHR-RGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (340)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHH-TTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHh-cCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence            799999999999999998865 678766553 22110000000 00000011 0011111111  123677778899999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +.+.|..      ...+.....++.|+.+|..+
T Consensus        82 ~~aTp~~------~s~~~a~~~~~aG~kvV~~s  108 (340)
T 1b7g_O           82 VDTTPNG------VGAQYKPIYLQLQRNAIFQG  108 (340)
T ss_dssp             EECCSTT------HHHHHHHHHHHTTCEEEECT
T ss_pred             EECCCCc------hhHHHHHHHHHcCCeEEEeC
Confidence            9998733      22223222445676555553

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=97.04  E-value=0.0011  Score=61.98  Aligned_cols=103  Identities=17%  Similarity=0.171  Sum_probs=63.7

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccc------------------c
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDD------------------L  209 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~  209 (269)
                      +.++.|+||.|=|+|++|+.+|+.|...|++|++++.+...          ...++|+..+                  .
T Consensus       230 ~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~----------i~d~~Gid~e~l~~l~e~k~~~~g~v~~~  299 (450)
T 4fcc_A          230 GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGT----------VVDESGFTKEKLARLIEIKSSRDGRVADY  299 (450)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEE----------EECTTCCCHHHHHHHHHHHTSTTCCHHHH
T ss_pred             CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCce----------EEeCCCCCHHHHHHHHHHhcccCCccccc
Confidence            45799999999999999999999999999999887643211          0001111000                  0


Q ss_pred             ccccC-CCCCHHHHH-hhCCEEEEecCCCccccCcCCHHHHhhhCCCC--cEEEEccCCCC
Q 024297          210 VDEKG-CHEDIFEFA-SKADVVVCCLSLNKQTVKLCSSSLSSKSMFFA--TYVVFMFQGHG  266 (269)
Q Consensus       210 ~~~~~-~~~~l~ell-~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~g--a~lIN~~RG~~  266 (269)
                      ....+ ...+-++++ -+|||++=|     .+.+.||.+... .++.+  .++++-+=+++
T Consensus       300 ~~~~g~~~~~~~~i~~~~~DI~iPc-----Al~~~I~~~~a~-~L~a~g~k~IaEgAN~p~  354 (450)
T 4fcc_A          300 AKEFGLVYLEGQQPWSVPVDIALPC-----ATQNELDVDAAH-QLIANGVKAVAEGANMPT  354 (450)
T ss_dssp             HHHHTCEEEETCCGGGSCCSEEEEC-----SCTTCBCHHHHH-HHHHTTCCEEECCSSSCB
T ss_pred             cccCCcEEecCcccccCCccEEeec-----cccccccHHHHH-HHHhcCceEEecCCCCCC
Confidence            00000 000001112 279998887     466889998888 77653  46777665554

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=97.03  E-value=0.00036  Score=55.00  Aligned_cols=87  Identities=10%  Similarity=0.142  Sum_probs=58.5

Q ss_pred             cCCEEEEEec----CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          152 LGKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       152 ~g~~vgIiG~----G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      .-++|+|||.    |++|..+++.|+..|++|+.+++.....                  +.. ....+.+++++-...|
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~------------------~i~-G~~~~~sl~el~~~vD   72 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE------------------ELF-GEEAVASLLDLKEPVD   72 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS------------------EET-TEECBSSGGGCCSCCS
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccC------------------cCC-CEEecCCHHHCCCCCC
Confidence            3568999999    8999999999999999977777641110                  010 0012356777777899


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      ++++++|. +....++.+ ..+ . ..++++++.
T Consensus        73 lavi~vp~-~~~~~v~~~-~~~-~-gi~~i~~~~  102 (140)
T 1iuk_A           73 ILDVFRPP-SALMDHLPE-VLA-L-RPGLVWLQS  102 (140)
T ss_dssp             EEEECSCH-HHHTTTHHH-HHH-H-CCSCEEECT
T ss_pred             EEEEEeCH-HHHHHHHHH-HHH-c-CCCEEEEcC
Confidence            99999995 566677643 444 3 333555543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.97  E-value=0.00021  Score=66.33  Aligned_cols=98  Identities=18%  Similarity=0.246  Sum_probs=59.0

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH-HhhCCEEEE
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKADVVVC  231 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDvvv~  231 (269)
                      +.+|.|+|+|.+|+.+++.|...|.+|+++|+++..-.....        .| ..-........+.|.++ +.+||+|++
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~--------~g-~~vi~GDat~~~~L~~agi~~A~~viv   74 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK--------FG-MKVFYGDATRMDLLESAGAAKAEVLIN   74 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH--------TT-CCCEESCTTCHHHHHHTTTTTCSEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh--------CC-CeEEEcCCCCHHHHHhcCCCccCEEEE
Confidence            356899999999999999999999999999987653111000        00 00011111111224444 678999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +++....+..+  ....+ .+.|...+|--+
T Consensus        75 ~~~~~~~n~~i--~~~ar-~~~p~~~Iiara  102 (413)
T 3l9w_A           75 AIDDPQTNLQL--TEMVK-EHFPHLQIIARA  102 (413)
T ss_dssp             CCSSHHHHHHH--HHHHH-HHCTTCEEEEEE
T ss_pred             CCCChHHHHHH--HHHHH-HhCCCCeEEEEE
Confidence            99854333222  33444 566665555433

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=96.95  E-value=0.0012  Score=58.63  Aligned_cols=66  Identities=15%  Similarity=0.141  Sum_probs=45.8

Q ss_pred             CEEEEEecCchHHH-HHHHhcc-CCCEEE-EEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCE
Q 024297          154 KTVFILGFGNIGVE-LAKRLRP-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV  228 (269)
Q Consensus       154 ~~vgIiG~G~iG~~-~a~~l~~-~G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDv  228 (269)
                      .+|||||+|.||+. +++.+.. -|++|. ++|++..+...                 .....+  .+.+++++..+.|+
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~-----------------~~~~~g~~~~~~~~~l~~~~D~   68 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALP-----------------ICESWRIPYADSLSSLAASCDA   68 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHH-----------------HHHHHTCCBCSSHHHHHTTCSE
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHH-----------------HHHHcCCCccCcHHHhhcCCCE
Confidence            48999999999996 8887765 478876 78877654211                 111111  23567777678999


Q ss_pred             EEEecCCC
Q 024297          229 VVCCLSLN  236 (269)
Q Consensus       229 vv~~lp~t  236 (269)
                      |++++|..
T Consensus        69 V~i~tp~~   76 (319)
T 1tlt_A           69 VFVHSSTA   76 (319)
T ss_dssp             EEECSCTT
T ss_pred             EEEeCCch
Confidence            99999843

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.93  E-value=0.00082  Score=56.54  Aligned_cols=79  Identities=22%  Similarity=0.230  Sum_probs=51.4

Q ss_pred             ccccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccc-cccccccCCCCCHHHHHh
Q 024297          147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII-DDLVDEKGCHEDIFEFAS  224 (269)
Q Consensus       147 ~~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ell~  224 (269)
                      ....+.|++|.|.|. |.||+++++.|...|++|++++|+..+......        .+ + .-...+. . +++.+.+.
T Consensus        15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--------~~-~~~~~~~Dl-~-~~~~~~~~   83 (236)
T 3e8x_A           15 ENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--------RG-ASDIVVANL-E-EDFSHAFA   83 (236)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------TT-CSEEEECCT-T-SCCGGGGT
T ss_pred             cccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--------CC-CceEEEccc-H-HHHHHHHc
Confidence            346799999999997 999999999999999999999997654211000        00 0 0000011 1 56778888


Q ss_pred             hCCEEEEecCCC
Q 024297          225 KADVVVCCLSLN  236 (269)
Q Consensus       225 ~aDvvv~~lp~t  236 (269)
                      .+|+|+.+....
T Consensus        84 ~~D~vi~~ag~~   95 (236)
T 3e8x_A           84 SIDAVVFAAGSG   95 (236)
T ss_dssp             TCSEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            999999887654

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.93  E-value=0.00031  Score=59.50  Aligned_cols=94  Identities=13%  Similarity=0.126  Sum_probs=56.1

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH-HhhCCEEEE
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKADVVVC  231 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDvvv~  231 (269)
                      .+++.|+|+|.+|+.+++.|...|. |+++++++.......         .| +.-........+.|.++ +.++|.|++
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~---------~~-~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR---------SG-ANFVHGDPTRVSDLEKANVRGARAVIV   77 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH---------TT-CEEEESCTTCHHHHHHTTCTTCSEEEE
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh---------cC-CeEEEcCCCCHHHHHhcCcchhcEEEE
Confidence            4679999999999999999999999 999998654311000         01 00011111111234444 779999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEE
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVF  260 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN  260 (269)
                      +.|....  .+.-....+ .+.++..+|.
T Consensus        78 ~~~~d~~--n~~~~~~a~-~~~~~~~iia  103 (234)
T 2aef_A           78 DLESDSE--TIHCILGIR-KIDESVRIIA  103 (234)
T ss_dssp             CCSCHHH--HHHHHHHHH-HHCSSSEEEE
T ss_pred             cCCCcHH--HHHHHHHHH-HHCCCCeEEE
Confidence            9874422  233333445 6666644443

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.92  E-value=0.0032  Score=58.38  Aligned_cols=101  Identities=23%  Similarity=0.212  Sum_probs=63.5

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEE-cCCCCCccccccccchhhhccccccccc----cc------c-CC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLV----DE------K-GC  215 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~------~-~~  215 (269)
                      +.++.|+||.|-|+|++|+.+|+.|..+|++|+++ |.+..-           ..++|+..+..    ..      + ..
T Consensus       216 g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~i-----------yd~~GlD~~~l~~~~~~~g~i~~~~a~  284 (424)
T 3k92_A          216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGL-----------YNPDGLDIPYLLDKRDSFGMVTNLFTD  284 (424)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEE-----------ECTTCCCHHHHHHHCCSSSCCGGGCSC
T ss_pred             CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcE-----------ECCCCCCHHHHHHHHHHhCCCCCCCcE
Confidence            46799999999999999999999999999998654 433110           01122110000    00      0 12


Q ss_pred             CCCHHHHHh-hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297          216 HEDIFEFAS-KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       216 ~~~l~ell~-~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      ..+-++++. +|||++=|.     +.+.|+.+... .++ -.+++--+=|++
T Consensus       285 ~~~~~~i~~~~~DIliPcA-----~~n~I~~~~a~-~l~-ak~V~EgAN~p~  329 (424)
T 3k92_A          285 VITNEELLEKDCDILVPAA-----ISNQITAKNAH-NIQ-ASIVVERANGPT  329 (424)
T ss_dssp             CBCHHHHHHSCCSEEEECS-----CSSCBCTTTGG-GCC-CSEEECCSSSCB
T ss_pred             EecCccceeccccEEeecC-----cccccChhhHh-hcC-ceEEEcCCCCCC
Confidence            224456555 899998874     45788888777 663 445555555543

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.92  E-value=0.0012  Score=53.73  Aligned_cols=75  Identities=16%  Similarity=0.143  Sum_probs=51.2

Q ss_pred             CCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          153 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       153 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      +++|.|+|. |.||+++++.|...|.+|++++|+..+.....         ...+.-...+....+++.++++.+|+|+.
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~~~d~vi~   73 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEG---------PRPAHVVVGDVLQAADVDKTVAGQDAVIV   73 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSS---------CCCSEEEESCTTSHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhccccc---------CCceEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            479999997 99999999999999999999998764421100         00000011111133467788999999998


Q ss_pred             ecCCC
Q 024297          232 CLSLN  236 (269)
Q Consensus       232 ~lp~t  236 (269)
                      +....
T Consensus        74 ~a~~~   78 (206)
T 1hdo_A           74 LLGTR   78 (206)
T ss_dssp             CCCCT
T ss_pred             CccCC
Confidence            87644

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.91  E-value=0.00052  Score=64.36  Aligned_cols=78  Identities=19%  Similarity=0.215  Sum_probs=50.7

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      .+++|+|+|.|.||+.+++.|...|.+|.+++|+..+.......     +  +.+..........+++.++++++|+|++
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~-----~--~~~~~~~~Dv~d~~~l~~~l~~~DvVIn   74 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAG-----V--QHSTPISLDVNDDAALDAEVAKHDLVIS   74 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTT-----C--TTEEEEECCTTCHHHHHHHHTTSSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHh-----c--CCceEEEeecCCHHHHHHHHcCCcEEEE
Confidence            46899999999999999999999999999999875431110000     0  0000000011122356788889999999


Q ss_pred             ecCCC
Q 024297          232 CLSLN  236 (269)
Q Consensus       232 ~lp~t  236 (269)
                      +.|..
T Consensus        75 ~a~~~   79 (450)
T 1ff9_A           75 LIPYT   79 (450)
T ss_dssp             CCC--
T ss_pred             CCccc
Confidence            99854

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.90  E-value=0.00095  Score=56.33  Aligned_cols=102  Identities=18%  Similarity=0.113  Sum_probs=63.4

Q ss_pred             ccCCEEEEEe-cCchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          151 LLGKTVFILG-FGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       151 l~g~~vgIiG-~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      ...++|.|.| .|.||+++++.|...| ++|++++|+..+......         ..+.....+....++++++++.+|+
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~---------~~~~~~~~Dl~d~~~~~~~~~~~D~   91 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYP---------TNSQIIMGDVLNHAALKQAMQGQDI   91 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCC---------TTEEEEECCTTCHHHHHHHHTTCSE
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccccc---------CCcEEEEecCCCHHHHHHHhcCCCE
Confidence            4457899999 7999999999999999 899999987654211100         0000111112234567888999999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCC-C-cEEEEccCC
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFF-A-TYVVFMFQG  264 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~-g-a~lIN~~RG  264 (269)
                      |+.+......  .......+. .|+. + ..|||++-.
T Consensus        92 vv~~a~~~~~--~~~~~~~~~-~~~~~~~~~iV~iSS~  126 (236)
T 3qvo_A           92 VYANLTGEDL--DIQANSVIA-AMKACDVKRLIFVLSL  126 (236)
T ss_dssp             EEEECCSTTH--HHHHHHHHH-HHHHTTCCEEEEECCC
T ss_pred             EEEcCCCCch--hHHHHHHHH-HHHHcCCCEEEEEecc
Confidence            9988764321  111233444 4542 2 468888753

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.90  E-value=0.00078  Score=62.49  Aligned_cols=71  Identities=18%  Similarity=0.196  Sum_probs=49.2

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      -+.+++|+|+|-|.+|+.+++.++.+|++|+++|+++.....   +     +.+   ......+...+.+.++++++|+|
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~---~-----~ad---~~~~~~~~d~~~l~~~a~~~D~V  100 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAG---A-----VAD---RHLRAAYDDEAALAELAGLCEAV  100 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHH---H-----HSS---EEECCCTTCHHHHHHHHHHCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchh---h-----hCC---EEEECCcCCHHHHHHHHhcCCEE
Confidence            468999999999999999999999999999999976543111   0     000   00111111234577788899998


Q ss_pred             EE
Q 024297          230 VC  231 (269)
Q Consensus       230 v~  231 (269)
                      +.
T Consensus       101 ~~  102 (419)
T 4e4t_A          101 ST  102 (419)
T ss_dssp             EE
T ss_pred             EE
Confidence            83

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.88  E-value=0.00048  Score=57.36  Aligned_cols=98  Identities=14%  Similarity=0.077  Sum_probs=60.8

Q ss_pred             CEEEEEe-cCchHHHHHHHhc-cCCCEEEEEcCCCC-CccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          154 KTVFILG-FGNIGVELAKRLR-PFGVKIIATKRSWA-SHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~-~~G~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      |+|.|.| .|.||+++++.|. ..|++|++++|+.. +... ..      -....+.....+....+++.++++.+|+|+
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~-~~------~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv   78 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPP-EI------IDHERVTVIEGSFQNPGXLEQAVTNAEVVF   78 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCH-HH------HTSTTEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchh-hc------cCCCceEEEECCCCCHHHHHHHHcCCCEEE
Confidence            6799999 6999999999999 89999999998754 2110 00      000000011111223356788899999999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCC-C-cEEEEccC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFF-A-TYVVFMFQ  263 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~-g-a~lIN~~R  263 (269)
                      .+.... ...   ....+. .|+. + ..|||++-
T Consensus        79 ~~ag~~-n~~---~~~~~~-~~~~~~~~~iv~iSs  108 (221)
T 3r6d_A           79 VGAMES-GSD---MASIVK-ALSRXNIRRVIGVSM  108 (221)
T ss_dssp             ESCCCC-HHH---HHHHHH-HHHHTTCCEEEEEEE
T ss_pred             EcCCCC-Chh---HHHHHH-HHHhcCCCeEEEEee
Confidence            988642 111   344455 5543 2 36777764

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.88  E-value=0.00091  Score=60.41  Aligned_cols=98  Identities=22%  Similarity=0.195  Sum_probs=63.9

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCC-CHHHHH-hhCCEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE-DIFEFA-SKADVV  229 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ell-~~aDvv  229 (269)
                      .|++|.|+|.|.+|+.+++.++.+|++|++++++..+......        -| .+..++.  ... ++.+.+ ...|+|
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~--------lG-a~~v~~~--~~~~~~~~~~~~~~D~v  247 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK--------MG-ADHYIAT--LEEGDWGEKYFDTFDLI  247 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH--------HT-CSEEEEG--GGTSCHHHHSCSCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH--------cC-CCEEEcC--cCchHHHHHhhcCCCEE
Confidence            5789999999999999999999999999999987655211110        01 0111110  011 333333 468999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +.++..++  ...+. ..++ .++++..++.++..
T Consensus       248 id~~g~~~--~~~~~-~~~~-~l~~~G~iv~~g~~  278 (360)
T 1piw_A          248 VVCASSLT--DIDFN-IMPK-AMKVGGRIVSISIP  278 (360)
T ss_dssp             EECCSCST--TCCTT-TGGG-GEEEEEEEEECCCC
T ss_pred             EECCCCCc--HHHHH-HHHH-HhcCCCEEEEecCC
Confidence            99987521  12223 3567 89999999998753

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=96.87  E-value=0.00099  Score=60.32  Aligned_cols=64  Identities=17%  Similarity=0.191  Sum_probs=46.3

Q ss_pred             CEEEEEecCchHHH-HHHHhccC-CCEEE-EEcCCCCCccccccccchhhhccccccccccccC---CCCCHHHHHhhC-
Q 024297          154 KTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASKA-  226 (269)
Q Consensus       154 ~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~a-  226 (269)
                      .+|||||+|.||+. .++.+... +++|. ++|++..+..                 .....+.   .+.++++++.+. 
T Consensus         6 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~a~~~~~~~~~~~~~~ll~~~~   68 (359)
T 3m2t_A            6 IKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERAR-----------------RVHRFISDIPVLDNVPAMLNQVP   68 (359)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHG-----------------GGGGTSCSCCEESSHHHHHHHSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHH-----------------HHHHhcCCCcccCCHHHHhcCCC
Confidence            58999999999995 88888776 78876 6677654321                 1111111   347899999865 


Q ss_pred             -CEEEEecC
Q 024297          227 -DVVVCCLS  234 (269)
Q Consensus       227 -Dvvv~~lp  234 (269)
                       |+|++++|
T Consensus        69 vD~V~i~tp   77 (359)
T 3m2t_A           69 LDAVVMAGP   77 (359)
T ss_dssp             CSEEEECSC
T ss_pred             CCEEEEcCC
Confidence             99999988

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.85  E-value=0.00042  Score=62.77  Aligned_cols=97  Identities=14%  Similarity=0.211  Sum_probs=62.7

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC---CCccccccccchhhhccccccccccccCC--CCCHHHHHh
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW---ASHSQVSCQSSALAVKNGIIDDLVDEKGC--HEDIFEFAS  224 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~  224 (269)
                      .+.|++|.|+|.|.||+.+++.++.+|++|++++++.   .+.....        .-| ++.. +  ..  .+.+.+.-.
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~--------~~g-a~~v-~--~~~~~~~~~~~~~  245 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIE--------ETK-TNYY-N--SSNGYDKLKDSVG  245 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHH--------HHT-CEEE-E--CTTCSHHHHHHHC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHH--------HhC-Ccee-c--hHHHHHHHHHhCC
Confidence            5669999999999999999999999999999999876   3311100        001 0111 1  11  011222113


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ..|+|+.++...+..   + ...+. .|+++..+|+++-
T Consensus       246 ~~d~vid~~g~~~~~---~-~~~~~-~l~~~G~iv~~g~  279 (366)
T 2cdc_A          246 KFDVIIDATGADVNI---L-GNVIP-LLGRNGVLGLFGF  279 (366)
T ss_dssp             CEEEEEECCCCCTHH---H-HHHGG-GEEEEEEEEECSC
T ss_pred             CCCEEEECCCChHHH---H-HHHHH-HHhcCCEEEEEec
Confidence            589999998643211   1 44667 8999999999874

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=96.84  E-value=0.00053  Score=60.89  Aligned_cols=34  Identities=24%  Similarity=0.244  Sum_probs=30.7

Q ss_pred             CEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWA  187 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~  187 (269)
                      ++|+|||.|.+|..+|..+...|.  +|..+|++..
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~   36 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDED   36 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHH
Confidence            489999999999999999998888  9999998653

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.84  E-value=0.0012  Score=57.92  Aligned_cols=83  Identities=16%  Similarity=0.179  Sum_probs=53.3

Q ss_pred             ccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       149 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      .++.|+++.|+| .|.+|+++++.|...|++|++++|+..+.......   +.-..+ ..-...+....+++.++++++|
T Consensus       115 ~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~---~~~~~~-~~~~~~D~~~~~~~~~~~~~~D  190 (287)
T 1lu9_A          115 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADS---VNKRFK-VNVTAAETADDASRAEAVKGAH  190 (287)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---HHHHHT-CCCEEEECCSHHHHHHHTTTCS
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHH---HHhcCC-cEEEEecCCCHHHHHHHHHhCC
Confidence            347889999999 99999999999999999999999875431111000   000000 0000001112234678888999


Q ss_pred             EEEEecCC
Q 024297          228 VVVCCLSL  235 (269)
Q Consensus       228 vvv~~lp~  235 (269)
                      +||++.+.
T Consensus       191 vlVn~ag~  198 (287)
T 1lu9_A          191 FVFTAGAI  198 (287)
T ss_dssp             EEEECCCT
T ss_pred             EEEECCCc
Confidence            99999874

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.82  E-value=0.0058  Score=56.99  Aligned_cols=100  Identities=21%  Similarity=0.201  Sum_probs=61.4

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEc-CCCCCccccccccchhhhccccccccc----cc------c--C
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK-RSWASHSQVSCQSSALAVKNGIIDDLV----DE------K--G  214 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~------~--~  214 (269)
                      +.++.|++|.|.|+|++|+.+|+.|..+|++|+++. .+..-           ..++|+-.+..    ..      +  .
T Consensus       230 g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i-----------~dp~Gld~~~l~~~~~~~g~i~~y~~a  298 (440)
T 3aog_A          230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTV-----------YNEAGIDPYDLLRHVQEFGGVRGYPKA  298 (440)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEE-----------ECTTCCCHHHHHHHHHHTSSSTTCTTS
T ss_pred             CCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEE-----------ECCCCCCHHHHHHHHHhcCCcccCCCc
Confidence            457999999999999999999999999999998544 32110           00111100000    00      0  0


Q ss_pred             CCCCHHHHHh-hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          215 CHEDIFEFAS-KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       215 ~~~~l~ell~-~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      ...+-++++. +||+++-|..     .+.++.+... .++ ..+++--+=++
T Consensus       299 ~~i~~~ei~~~~~DIlvPcA~-----~n~i~~~na~-~l~-ak~VvEgAN~p  343 (440)
T 3aog_A          299 EPLPAADFWGLPVEFLVPAAL-----EKQITEQNAW-RIR-ARIVAEGANGP  343 (440)
T ss_dssp             EECCHHHHTTCCCSEEEECSS-----SSCBCTTTGG-GCC-CSEEECCSSSC
T ss_pred             eEcCchhhhcCCCcEEEecCC-----cCccchhhHH-HcC-CcEEEecCccc
Confidence            1223456665 8999998853     4667777766 663 44555444444

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=96.82  E-value=0.0008  Score=56.98  Aligned_cols=68  Identities=16%  Similarity=0.169  Sum_probs=42.3

Q ss_pred             CEEEEEecCchHHHHHHH--hccCCCEEE-EEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          154 KTVFILGFGNIGVELAKR--LRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~--l~~~G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      .+|+|||.|++|+++++.  +...|++|. ++|.++.+.....              ....-. ..+++++++++.|+++
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i--------------~gv~V~-~~~dl~eli~~~D~Vi  150 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEV--------------GGVPVY-NLDDLEQHVKDESVAI  150 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEE--------------TTEEEE-EGGGHHHHCSSCCEEE
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHh--------------cCCeee-chhhHHHHHHhCCEEE
Confidence            479999999999999994  345688754 6666655421110              001101 2467999998779999


Q ss_pred             EecCCC
Q 024297          231 CCLSLN  236 (269)
Q Consensus       231 ~~lp~t  236 (269)
                      +++|..
T Consensus       151 IAvPs~  156 (215)
T 2vt3_A          151 LTVPAV  156 (215)
T ss_dssp             ECSCHH
T ss_pred             EecCch
Confidence            999843

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=96.82  E-value=0.00076  Score=59.99  Aligned_cols=64  Identities=17%  Similarity=0.201  Sum_probs=45.0

Q ss_pred             EEEEEecCchHHHH-HHHhccCCCEEE-EEcCCCCCccccccccchhhhccccccccccccC---CCCCHHHHHh--hCC
Q 024297          155 TVFILGFGNIGVEL-AKRLRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--KAD  227 (269)
Q Consensus       155 ~vgIiG~G~iG~~~-a~~l~~~G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~aD  227 (269)
                      +|||||+|.||+.. ++.+...|++|. ++|++..+..                 .....++   .+.+++++++  ++|
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~-----------------~~~~~~g~~~~~~~~~~~l~~~~~D   64 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGA-----------------AYATENGIGKSVTSVEELVGDPDVD   64 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHH-----------------HHHHHTTCSCCBSCHHHHHTCTTCC
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHH-----------------HHHHHcCCCcccCCHHHHhcCCCCC
Confidence            79999999999997 776665788876 6677654311                 1111111   3468999997  599


Q ss_pred             EEEEecCC
Q 024297          228 VVVCCLSL  235 (269)
Q Consensus       228 vvv~~lp~  235 (269)
                      +|++++|.
T Consensus        65 ~V~i~tp~   72 (332)
T 2glx_A           65 AVYVSTTN   72 (332)
T ss_dssp             EEEECSCG
T ss_pred             EEEEeCCh
Confidence            99999983

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.81  E-value=0.0012  Score=59.12  Aligned_cols=74  Identities=12%  Similarity=0.061  Sum_probs=47.4

Q ss_pred             CEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccc--cCCCCCHHHHHhhCCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE--KGCHEDIFEFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~aDvvv  230 (269)
                      ++|+|||.|.+|..+|..+...|. +|..+|++..+......   +.  .+. .......  .....++ +.++.||+|+
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~---~l--~~~-~~~~~~~~~i~~t~d~-~al~~aD~Vi   77 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKAL---DT--SHT-NVMAYSNCKVSGSNTY-DDLAGADVVI   77 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHH---HH--HTH-HHHHTCCCCEEEECCG-GGGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH---HH--Hhh-hhhcCCCcEEEECCCH-HHhCCCCEEE
Confidence            589999999999999999998887 89999987643110000   00  000 0000000  0011456 6789999999


Q ss_pred             EecC
Q 024297          231 CCLS  234 (269)
Q Consensus       231 ~~lp  234 (269)
                      ++.+
T Consensus        78 ~a~g   81 (322)
T 1t2d_A           78 VTAG   81 (322)
T ss_dssp             ECCS
T ss_pred             EeCC
Confidence            9984

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=96.80  E-value=0.0038  Score=57.91  Aligned_cols=36  Identities=42%  Similarity=0.503  Sum_probs=32.8

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEc
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK  183 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~  183 (269)
                      +.++.|++|.|.|+|++|+.+++.|..+|++|+++.
T Consensus       205 g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavs  240 (421)
T 1v9l_A          205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVS  240 (421)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEE
Confidence            567999999999999999999999999999998544

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=96.80  E-value=0.00042  Score=61.50  Aligned_cols=65  Identities=11%  Similarity=0.152  Sum_probs=45.9

Q ss_pred             CEEEEEecCchHHHHHHHhccC-CCEEE-EEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh--hCCEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADVV  229 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDvv  229 (269)
                      .+|||||+|.||+..++.+... ++++. ++|++..+...                 .......+.+++++++  ++|+|
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~-----------------~~~~~~~~~~~~~~l~~~~~D~V   73 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLAL-----------------VPPGCVIESDWRSVVSAPEVEAV   73 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTT-----------------CCTTCEEESSTHHHHTCTTCCEE
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHH-----------------HHhhCcccCCHHHHhhCCCCCEE
Confidence            4899999999999999998875 67754 77776433110                 0000112467889886  89999


Q ss_pred             EEecCC
Q 024297          230 VCCLSL  235 (269)
Q Consensus       230 v~~lp~  235 (269)
                      ++++|.
T Consensus        74 ~i~tp~   79 (315)
T 3c1a_A           74 IIATPP   79 (315)
T ss_dssp             EEESCG
T ss_pred             EEeCCh
Confidence            999884

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.78  E-value=0.0013  Score=54.69  Aligned_cols=73  Identities=19%  Similarity=0.235  Sum_probs=50.8

Q ss_pred             CEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCC-CCCHHHHHhhCCEEEE
Q 024297          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC-HEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDvvv~  231 (269)
                      ++|.|.| .|.||+.+++.|...|++|++++|+..+.....           .+.-...+... .+++.++++++|+|+.
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-----------~~~~~~~D~~d~~~~~~~~~~~~d~vi~   69 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYN-----------NVKAVHFDVDWTPEEMAKQLHGMDAIIN   69 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCT-----------TEEEEECCTTSCHHHHHTTTTTCSEEEE
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcC-----------CceEEEecccCCHHHHHHHHcCCCEEEE
Confidence            3789999 899999999999999999999999865421100           00001111112 3457778889999999


Q ss_pred             ecCCCc
Q 024297          232 CLSLNK  237 (269)
Q Consensus       232 ~lp~t~  237 (269)
                      +.....
T Consensus        70 ~ag~~~   75 (219)
T 3dqp_A           70 VSGSGG   75 (219)
T ss_dssp             CCCCTT
T ss_pred             CCcCCC
Confidence            887554

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.78  E-value=0.00096  Score=59.76  Aligned_cols=96  Identities=19%  Similarity=0.175  Sum_probs=62.7

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH----hhCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA----SKAD  227 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell----~~aD  227 (269)
                      .|++|.|+|.|.+|+.+++.++.+|++|++++++..+.....        .-| ++..++ . ...++.+.+    ...|
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~--------~lG-a~~~~d-~-~~~~~~~~~~~~~~~~d  232 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK--------ELG-ADLVVN-P-LKEDAAKFMKEKVGGVH  232 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH--------HTT-CSEEEC-T-TTSCHHHHHHHHHSSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--------HCC-CCEEec-C-CCccHHHHHHHHhCCCC
Confidence            578999999999999999999999999999998654421110        001 011111 0 112343333    4589


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +|+.+....+    . -...++ .|+++..+++++..
T Consensus       233 ~vid~~g~~~----~-~~~~~~-~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          233 AAVVTAVSKP----A-FQSAYN-SIRRGGACVLVGLP  263 (339)
T ss_dssp             EEEESSCCHH----H-HHHHHH-HEEEEEEEEECCCC
T ss_pred             EEEECCCCHH----H-HHHHHH-HhhcCCEEEEeccc
Confidence            9999876321    1 244677 89999999998754

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=96.78  E-value=0.001  Score=52.58  Aligned_cols=83  Identities=13%  Similarity=0.089  Sum_probs=56.2

Q ss_pred             CCEEEEEec----CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          153 GKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       153 g~~vgIiG~----G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      -++|+|||.    |++|..+++.|+..|++|+.+++....    .              ....   .+.+++++....|+
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~----i--------------~G~~---~y~sl~~l~~~vDl   80 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEE----V--------------LGRK---CYPSVLDIPDKIEV   80 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE----E--------------TTEE---CBSSGGGCSSCCSE
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCe----E--------------CCee---ccCCHHHcCCCCCE
Confidence            579999999    799999999999999998777764311    0              0111   23567777778999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEE
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVF  260 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN  260 (269)
                      +++++|. +....++.+ ..+ . ...+++++
T Consensus        81 vvi~vp~-~~~~~vv~~-~~~-~-gi~~i~~~  108 (144)
T 2d59_A           81 VDLFVKP-KLTMEYVEQ-AIK-K-GAKVVWFQ  108 (144)
T ss_dssp             EEECSCH-HHHHHHHHH-HHH-H-TCSEEEEC
T ss_pred             EEEEeCH-HHHHHHHHH-HHH-c-CCCEEEEC
Confidence            9999985 455555533 333 2 23345544

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.77  E-value=0.00066  Score=61.00  Aligned_cols=93  Identities=13%  Similarity=0.167  Sum_probs=62.3

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      -.|.+|.|+|.|.+|+.+++.++.+|++|++++++..+......        -| .+...      .+.+.+.+..|+|+
T Consensus       175 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~--------lG-a~~v~------~~~~~~~~~~D~vi  239 (348)
T 3two_A          175 TKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS--------MG-VKHFY------TDPKQCKEELDFII  239 (348)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH--------TT-CSEEE------SSGGGCCSCEEEEE
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh--------cC-CCeec------CCHHHHhcCCCEEE
Confidence            35789999999999999999999999999999987765321110        01 01111      01111122789999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      -++....    . -...++ .++++..++.+|-.
T Consensus       240 d~~g~~~----~-~~~~~~-~l~~~G~iv~~G~~  267 (348)
T 3two_A          240 STIPTHY----D-LKDYLK-LLTYNGDLALVGLP  267 (348)
T ss_dssp             ECCCSCC----C-HHHHHT-TEEEEEEEEECCCC
T ss_pred             ECCCcHH----H-HHHHHH-HHhcCCEEEEECCC
Confidence            8876321    2 234677 89999999998753

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=96.77  E-value=0.00059  Score=60.70  Aligned_cols=65  Identities=14%  Similarity=0.206  Sum_probs=43.2

Q ss_pred             CEEEEEecCchHH-HHHHHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccC--C-CCCHHHHH-hhCC
Q 024297          154 KTVFILGFGNIGV-ELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--C-HEDIFEFA-SKAD  227 (269)
Q Consensus       154 ~~vgIiG~G~iG~-~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~l~ell-~~aD  227 (269)
                      .+|||||+|.||+ ..++.+... +++|.++|++..+...                 ....++  . ..+..+++ .++|
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~-----------------~a~~~g~~~~~~~~~~~l~~~~D   65 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGT-----------------LATRYRVSATCTDYRDVLQYGVD   65 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHH-----------------HHHHTTCCCCCSSTTGGGGGCCS
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHH-----------------HHHHcCCCccccCHHHHhhcCCC
Confidence            3799999999998 588888765 7888888886543211                 111111  1 22333444 6899


Q ss_pred             EEEEecCC
Q 024297          228 VVVCCLSL  235 (269)
Q Consensus       228 vvv~~lp~  235 (269)
                      +|++++|.
T Consensus        66 ~V~i~tp~   73 (323)
T 1xea_A           66 AVMIHAAT   73 (323)
T ss_dssp             EEEECSCG
T ss_pred             EEEEECCc
Confidence            99999983

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.77  E-value=0.0032  Score=57.03  Aligned_cols=98  Identities=19%  Similarity=0.229  Sum_probs=63.3

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----  224 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----  224 (269)
                      -.|++|.|+|.|.+|+.+++.++.+|+ +|++++++..+......        -| ++..++......++.+.+.     
T Consensus       191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~--------lG-a~~vi~~~~~~~~~~~~~~~~~~~  261 (374)
T 1cdo_A          191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV--------FG-ATDFVNPNDHSEPISQVLSKMTNG  261 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH--------TT-CCEEECGGGCSSCHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH--------hC-CceEEeccccchhHHHHHHHHhCC
Confidence            357899999999999999999999999 89999987654211100        01 0111111000124554443     


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCC-cEEEEccC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFA-TYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~g-a~lIN~~R  263 (269)
                      ..|+|+.++... +   . -...++ .++++ ..+|.++-
T Consensus       262 g~D~vid~~g~~-~---~-~~~~~~-~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          262 GVDFSLECVGNV-G---V-MRNALE-SCLKGWGVSVLVGW  295 (374)
T ss_dssp             CBSEEEECSCCH-H---H-HHHHHH-TBCTTTCEEEECSC
T ss_pred             CCCEEEECCCCH-H---H-HHHHHH-HhhcCCcEEEEEcC
Confidence            489999987632 1   1 134677 89999 88888874

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=96.76  E-value=0.0012  Score=59.66  Aligned_cols=67  Identities=21%  Similarity=0.284  Sum_probs=48.1

Q ss_pred             cCCEEEEEecCchHHHHHHHhc-c-CCCEEE-EEcCCCCCccccccccchhhhcccccccccccc----CCCCCHHHHHh
Q 024297          152 LGKTVFILGFGNIGVELAKRLR-P-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK----GCHEDIFEFAS  224 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~-~-~G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~ell~  224 (269)
                      .-.+|||||+|.||+..++.+. . -+++|. ++|++..+...                 ....+    ..+.++++++.
T Consensus        22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~-----------------~a~~~g~~~~~~~~~~~ll~   84 (357)
T 3ec7_A           22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQA-----------------ALDKYAIEAKDYNDYHDLIN   84 (357)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHH-----------------HHHHHTCCCEEESSHHHHHH
T ss_pred             CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHH-----------------HHHHhCCCCeeeCCHHHHhc
Confidence            3458999999999999999887 5 478876 57776654211                 11111    13478999998


Q ss_pred             --hCCEEEEecCC
Q 024297          225 --KADVVVCCLSL  235 (269)
Q Consensus       225 --~aDvvv~~lp~  235 (269)
                        +.|+|++++|.
T Consensus        85 ~~~~D~V~i~tp~   97 (357)
T 3ec7_A           85 DKDVEVVIITASN   97 (357)
T ss_dssp             CTTCCEEEECSCG
T ss_pred             CCCCCEEEEcCCc
Confidence              58999999884

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.75  E-value=0.0029  Score=57.28  Aligned_cols=97  Identities=18%  Similarity=0.196  Sum_probs=62.8

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----h
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  225 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  225 (269)
                      .|++|.|+|.|.+|+.+++.++.+|+ +|++++++..+......        -| ++..++......++.+.+.     .
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~--------lG-a~~vi~~~~~~~~~~~~~~~~~~~g  261 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE--------VG-ATECVNPQDYKKPIQEVLTEMSNGG  261 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH--------TT-CSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH--------hC-CceEecccccchhHHHHHHHHhCCC
Confidence            57899999999999999999999999 89999987654211100        01 0111110000134544443     4


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCC-cEEEEccC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFA-TYVVFMFQ  263 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~g-a~lIN~~R  263 (269)
                      .|+|+.++... ++    -...++ .++++ ..++.++-
T Consensus       262 ~D~vid~~g~~-~~----~~~~~~-~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          262 VDFSFEVIGRL-DT----MVTALS-CCQEAYGVSVIVGV  294 (374)
T ss_dssp             BSEEEECSCCH-HH----HHHHHH-HBCTTTCEEEECSC
T ss_pred             CcEEEECCCCH-HH----HHHHHH-HhhcCCcEEEEecc
Confidence            89999998632 11    134677 89999 88888873

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.75  E-value=0.0011  Score=59.21  Aligned_cols=65  Identities=20%  Similarity=0.250  Sum_probs=45.9

Q ss_pred             CEEEEEecCchHHHHHHHhc-c-CCCEEE-EEcCCCCCccccccccchhhhccccccccccccC---CCCCHHHHHh--h
Q 024297          154 KTVFILGFGNIGVELAKRLR-P-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--K  225 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~-~-~G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~  225 (269)
                      .+|||||+|.||+..++.++ . -|++|+ ++|++..+..                 .....++   .+.++++++.  +
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~-----------------~~a~~~g~~~~~~~~~~~l~~~~   71 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLE-----------------WAKNELGVETTYTNYKDMIDTEN   71 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHH-----------------HHHHTTCCSEEESCHHHHHTTSC
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHH-----------------HHHHHhCCCcccCCHHHHhcCCC
Confidence            58999999999999999887 5 488854 5677654311                 0111111   2367899997  6


Q ss_pred             CCEEEEecCC
Q 024297          226 ADVVVCCLSL  235 (269)
Q Consensus       226 aDvvv~~lp~  235 (269)
                      +|+|++++|.
T Consensus        72 ~D~V~i~tp~   81 (346)
T 3cea_A           72 IDAIFIVAPT   81 (346)
T ss_dssp             CSEEEECSCG
T ss_pred             CCEEEEeCCh
Confidence            9999999884

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=96.74  E-value=0.0009  Score=60.06  Aligned_cols=65  Identities=18%  Similarity=0.218  Sum_probs=46.6

Q ss_pred             CEEEEEecCchHHHHHHHhc-c-CCCEEE-EEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHHhh-
Q 024297          154 KTVFILGFGNIGVELAKRLR-P-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASK-  225 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~-~-~G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~-  225 (269)
                      .+|||||+|.||+..++.+. . -+++|. ++|++..+..                 .....++    .+.++++++.+ 
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~-----------------~~~~~~g~~~~~~~~~~~ll~~~   65 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQ-----------------KVVEQYQLNATVYPNDDSLLADE   65 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHH-----------------HHHHHTTCCCEEESSHHHHHHCT
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHH-----------------HHHHHhCCCCeeeCCHHHHhcCC
Confidence            47999999999999999888 5 478876 5676543311                 1111111    34789999986 


Q ss_pred             -CCEEEEecCC
Q 024297          226 -ADVVVCCLSL  235 (269)
Q Consensus       226 -aDvvv~~lp~  235 (269)
                       .|+|++++|.
T Consensus        66 ~~D~V~i~tp~   76 (344)
T 3mz0_A           66 NVDAVLVTSWG   76 (344)
T ss_dssp             TCCEEEECSCG
T ss_pred             CCCEEEECCCc
Confidence             8999999884

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=96.73  E-value=0.00047  Score=62.25  Aligned_cols=68  Identities=16%  Similarity=0.152  Sum_probs=47.4

Q ss_pred             cCCEEEEEecCchHH-HHHHHhccC-CCEEE-EEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHh--
Q 024297          152 LGKTVFILGFGNIGV-ELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--  224 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~-~~a~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--  224 (269)
                      .-.+|||||+|.||+ ..++.+... +++|. ++|++..+..                 .....++  ...++++++.  
T Consensus        26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~a~~~g~~~~~~~~~ll~~~   88 (350)
T 3rc1_A           26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAK-----------------RFTERFGGEPVEGYPALLERD   88 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHH-----------------HHHHHHCSEEEESHHHHHTCT
T ss_pred             CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHH-----------------HHHHHcCCCCcCCHHHHhcCC
Confidence            346899999999998 788888876 88876 5676543311                 1111111  2368999997  


Q ss_pred             hCCEEEEecCCC
Q 024297          225 KADVVVCCLSLN  236 (269)
Q Consensus       225 ~aDvvv~~lp~t  236 (269)
                      +.|+|++++|..
T Consensus        89 ~~D~V~i~tp~~  100 (350)
T 3rc1_A           89 DVDAVYVPLPAV  100 (350)
T ss_dssp             TCSEEEECCCGG
T ss_pred             CCCEEEECCCcH
Confidence            589999998843

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.72  E-value=0.0011  Score=57.47  Aligned_cols=70  Identities=21%  Similarity=0.412  Sum_probs=48.7

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh-CCEEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK-ADVVV  230 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-aDvvv  230 (269)
                      .+++|.|.|.|.||+.+++.|...|.+|++++|+..+.....             .-...+....+++.++++. +|+|+
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-------------~~~~~Dl~d~~~~~~~~~~~~d~vi   68 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGV-------------QTLIADVTRPDTLASIVHLRPEILV   68 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTC-------------CEEECCTTCGGGCTTGGGGCCSEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCC-------------ceEEccCCChHHHHHhhcCCCCEEE
Confidence            357899999999999999999999999999999765411100             0011111133455666776 99998


Q ss_pred             EecC
Q 024297          231 CCLS  234 (269)
Q Consensus       231 ~~lp  234 (269)
                      .+..
T Consensus        69 h~a~   72 (286)
T 3gpi_A           69 YCVA   72 (286)
T ss_dssp             ECHH
T ss_pred             EeCC
Confidence            8764

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=96.71  E-value=0.0088  Score=55.84  Aligned_cols=139  Identities=15%  Similarity=0.082  Sum_probs=94.1

Q ss_pred             CCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCC
Q 024297           98 CGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV  177 (269)
Q Consensus        98 ~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~  177 (269)
                      ..|++.|.-      ..-+|=-+++.+++.+|-.                ++.+.+.+|.|.|.|.-|-.+|+++...|.
T Consensus       186 ~~ipvFnDD------~qGTA~V~lAgllnAlki~----------------gk~l~d~riV~~GAGaAGigia~ll~~~G~  243 (487)
T 3nv9_A          186 CDIPVWHDD------QQGTASVTLAGLLNALKLV----------------KKDIHECRMVFIGAGSSNTTCLRLIVTAGA  243 (487)
T ss_dssp             CSSCEEETT------THHHHHHHHHHHHHHHHHH----------------TCCGGGCCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             ccCCccccc------cchHHHHHHHHHHHHHHHh----------------CCChhhcEEEEECCCHHHHHHHHHHHHcCC
Confidence            378888863      2456778888999988853                688999999999999999999999999998


Q ss_pred             ---EEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhC
Q 024297          178 ---KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSM  252 (269)
Q Consensus       178 ---~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~m  252 (269)
                         +|+.+|+..--.....+. .++. ++..-.+......  ...+|.++++.+|+++-+-  +. ..+.++++.++ .|
T Consensus       244 ~~~~i~l~D~~Gli~~~R~~l-~~~~-~~~~k~~~A~~~n~~~~~~L~eav~~adVlIG~S--~~-~pg~ft~e~V~-~M  317 (487)
T 3nv9_A          244 DPKKIVMFDSKGSLHNGREDI-KKDT-RFYRKWEICETTNPSKFGSIAEACVGADVLISLS--TP-GPGVVKAEWIK-SM  317 (487)
T ss_dssp             CGGGEEEEETTEECCTTCHHH-HHCG-GGHHHHHHHHHSCTTCCCSHHHHHTTCSEEEECC--CS-SCCCCCHHHHH-TS
T ss_pred             CcccEEEEeccccccCCcchh-hhhc-ccHHHHHHHHhcccccCCCHHHHHhcCCEEEEec--cc-CCCCCCHHHHH-hh
Confidence               799999864211000000 0000 0000000111111  3458999999999777653  11 14899999999 99


Q ss_pred             CCCcEEEEccCC
Q 024297          253 FFATYVVFMFQG  264 (269)
Q Consensus       253 k~ga~lIN~~RG  264 (269)
                      .+..++.=.|..
T Consensus       318 a~~PIIFaLSNP  329 (487)
T 3nv9_A          318 GEKPIVFCCANP  329 (487)
T ss_dssp             CSSCEEEECCSS
T ss_pred             cCCCEEEECCCC
Confidence            999988876653

>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}

Probab=96.71  E-value=0.012  Score=54.10  Aligned_cols=138  Identities=12%  Similarity=0.017  Sum_probs=86.0

Q ss_pred             CcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec-----C---chHHHHHH
Q 024297           99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF-----G---NIGVELAK  170 (269)
Q Consensus        99 gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~-----G---~iG~~~a~  170 (269)
                      .++|.|.-+.   +..++  .+|+-++.+.+++         |.     -..+.|++|+|+|-     |   ++.+.++.
T Consensus       156 ~~PVINal~d---~~HPt--QaLaDl~TI~E~~---------G~-----~~~l~Glkva~vgd~~~~~G~~nnVa~Sli~  216 (399)
T 3q98_A          156 RPALVNLQCD---IDHPT--QSMADLAWLREHF---------GS-----LENLKGKKIAMTWAYSPSYGKPLSVPQGIIG  216 (399)
T ss_dssp             CCEEEEEECS---SCCHH--HHHHHHHHHHHHH---------SS-----SGGGTTCEEEEECCCCSSCCCCTHHHHHHHH
T ss_pred             CCcEEeCCCC---CcCcH--HHHHHHHHHHHHh---------CC-----ccccCCCEEEEEEecccccCcchHHHHHHHH
Confidence            3589998654   55676  6666777766653         11     12588999999973     4   68899999


Q ss_pred             HhccCCCEEEEEcCCCCCcccccccc-chhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCC-------------
Q 024297          171 RLRPFGVKIIATKRSWASHSQVSCQS-SALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLN-------------  236 (269)
Q Consensus       171 ~l~~~G~~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t-------------  236 (269)
                      .+..+|++|.++.+..-...+..... ..++-.+|      .......+++++++.+|||..-+=..             
T Consensus       217 ~~~~lG~~v~~~~P~~~~~~~~~~~~a~~~a~~~G------~~i~~~~d~~eav~~aDvVytd~W~Smg~~~er~~~~~~  290 (399)
T 3q98_A          217 LMTRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASG------GSFRQVTSMEEAFKDADIVYPKSWAPYKVMEERTELLRA  290 (399)
T ss_dssp             HHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHT------CEEEEESCHHHHHTTCSEEEECCCCCHHHHHHHHHHHHT
T ss_pred             HHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC------CEEEEEcCHHHHhCCCCEEEecCccccchhhhhhhhccc
Confidence            99999999999987532111100000 00000011      00112468999999999998864100             


Q ss_pred             ------------------ccccCcCCHHHHhhhCC-CCcEEEEcc
Q 024297          237 ------------------KQTVKLCSSSLSSKSMF-FATYVVFMF  262 (269)
Q Consensus       237 ------------------~~t~~li~~~~l~~~mk-~ga~lIN~~  262 (269)
                                        .-...-+|.+.++ ..+ ++++|.-+.
T Consensus       291 ~~~~~~~~~e~~~~~r~~~~~~yqVn~elm~-~a~~~daifMHcL  334 (399)
T 3q98_A          291 NDHEGLKALEKQCLAQNAQHKDWHCTEEMME-LTRDGEALYMHCL  334 (399)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTTTCCBCHHHHH-TSGGGCCEECCCS
T ss_pred             cchhhhhhhhhhhhHHHHHccCcEECHHHHh-hcCCCCcEEECCC
Confidence                              0013568999999 887 488887654

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.70  E-value=0.0053  Score=56.99  Aligned_cols=106  Identities=21%  Similarity=0.184  Sum_probs=58.3

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC-Cccccccccchhhhccccccccc----cccC--------
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA-SHSQVSCQSSALAVKNGIIDDLV----DEKG--------  214 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~--------  214 (269)
                      +.++.|++|.|.|+|++|+.+|+.|..+|++|+++..+.. +..-      ....++|+..+..    ...+        
T Consensus       207 g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G------~i~d~~Gld~~~l~~~~~~~g~i~~~~~a  280 (421)
T 2yfq_A          207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNY------ALYNENGIDFKELLAYKEANKTLIGFPGA  280 (421)
T ss_dssp             TCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSB------CCBCSSCCCHHHHHHHHHHHCC-------
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccce------EEECCCCCCHHHHHHHHHhcCCcccCCCc
Confidence            4579999999999999999999999999999996543331 0000      0011122100000    0000        


Q ss_pred             CCCCHHHHHh-hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297          215 CHEDIFEFAS-KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       215 ~~~~l~ell~-~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      ...+-++++. +|||++-|.     +.+.|+.+... .+ ...+++-.+=|++
T Consensus       281 ~~i~~~~~~~~~~DIliP~A-----~~n~i~~~~A~-~l-~ak~VvEgAN~P~  326 (421)
T 2yfq_A          281 ERITDEEFWTKEYDIIVPAA-----LENVITGERAK-TI-NAKLVCEAANGPT  326 (421)
T ss_dssp             --------------CEEECS-----CSSCSCHHHHT-TC-CCSEEECCSSSCS
T ss_pred             eEeCccchhcCCccEEEEcC-----CcCcCCcccHH-Hc-CCeEEEeCCcccc
Confidence            1111223333 799998884     35778888877 77 3556666666554

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.69  E-value=0.0011  Score=59.99  Aligned_cols=61  Identities=25%  Similarity=0.376  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCC
Q 024297          115 SCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (269)
Q Consensus       115 ~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  185 (269)
                      ..||.+.-+=|-+.|-          .-|.......+++++|.|+|.|.+|.++|+.|...|. +++.+|+.
T Consensus         6 ~~~~~~~~lnl~lm~w----------Rll~~~g~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A            6 KIADQSVDLNLKLMKW----------RILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             HHHHHHHHHHHHHHHH----------HTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             HHHHHHHHHHHHHHHH----------hhcchhhHHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            4566655544444331          2233333467999999999999999999999999998 79998864

>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}

Probab=96.69  E-value=0.0057  Score=56.64  Aligned_cols=133  Identities=16%  Similarity=0.117  Sum_probs=86.9

Q ss_pred             CcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccc--cccCCEEEEEe-----cCc---hHHHH
Q 024297           99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGE--TLLGKTVFILG-----FGN---IGVEL  168 (269)
Q Consensus        99 gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~--~l~g~~vgIiG-----~G~---iG~~~  168 (269)
                      .++|.|..+.   +..++  .+|+-++.+.+.+                |.  .+.|++|+|+|     +|.   +.+.+
T Consensus       153 ~~PVINa~~~---~~HPt--QaLaDl~TI~E~~----------------G~l~~l~Glkva~vgd~~~s~Gd~nnVa~Sl  211 (418)
T 2yfk_A          153 RPTLVNLQCD---IDHPT--QAMADALHLIHEF----------------GGIENLKGKKVAMTWAYSPSYGKPLSVPQGI  211 (418)
T ss_dssp             CCEEEEEEES---SCCHH--HHHHHHHHHHHHT----------------TSSGGGTTCEEEEECCCCSSSCCCSHHHHHH
T ss_pred             CCeEEeCCCC---ccChH--HHHHHHHHHHHHh----------------CCccccCCCEEEEEeccccccCccchHHHHH
Confidence            5679997653   55677  6677777766642                22  38899999997     354   99999


Q ss_pred             HHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHHhhCCEEEEecCCC--------
Q 024297          169 AKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKADVVVCCLSLN--------  236 (269)
Q Consensus       169 a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aDvvv~~lp~t--------  236 (269)
                      +..+..+|++|.++.+..-...+...   ..+      .......+    ...+++++++++|||...+=..        
T Consensus       212 i~~l~~lG~~v~l~~P~~~~~~p~~~---~~a------~~~a~~~G~~v~~~~d~~eav~~ADVVytd~W~sm~~Q~ER~  282 (418)
T 2yfk_A          212 VGLMTRLGMDVVLAHPEGYEIMPEVE---EVA------KKNAAEFGGNFTKTNSMAEAFKDADVVYPKSWAPFAAMEKRT  282 (418)
T ss_dssp             HHHHGGGTCEEEEECCTTCCCCHHHH---HHH------HHHHHHHSSEEEEESCHHHHHTTCSEEEECCCCCHHHHHHHH
T ss_pred             HHHHHHcCCEEEEECCccccCCHHHH---HHH------HHHHHHcCCEEEEEcCHHHHhcCCCEEEEccccchhHHHHHh
Confidence            99999999999999875321111000   000      00000111    2478999999999999863100        


Q ss_pred             -----------------------ccccCcCCHHHHhhhCCC-CcEEEEcc
Q 024297          237 -----------------------KQTVKLCSSSLSSKSMFF-ATYVVFMF  262 (269)
Q Consensus       237 -----------------------~~t~~li~~~~l~~~mk~-ga~lIN~~  262 (269)
                                             .....-+|.+.++ .+|+ +++|.-+.
T Consensus       283 ~~~~~g~~~~~~~~~~~~~~~~~~~~~y~vt~elm~-~ak~~dai~MHcL  331 (418)
T 2yfk_A          283 ELYGNGDQAGIDQLEQELLSQNKKHKDWECTEELMK-TTKDGKALYMHCL  331 (418)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHGGGTTCCBCHHHHH-TSGGGCCEECCCS
T ss_pred             hhhccccchhhhhhhhhhhhHHHHHhhcCCCHHHHH-hcCCCCeEEECCC
Confidence                                   0123577999999 8886 89887665

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.67  E-value=0.00068  Score=60.91  Aligned_cols=95  Identities=20%  Similarity=0.158  Sum_probs=62.4

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh------
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS------  224 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~------  224 (269)
                      .|++|.|+|.|.+|+.+++.++.+|+ +|++++++..+......        -| .+...+ . ...++.+.+.      
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~--------~G-a~~~~~-~-~~~~~~~~v~~~~~g~  235 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK--------VG-ADYVIN-P-FEEDVVKEVMDITDGN  235 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH--------HT-CSEEEC-T-TTSCHHHHHHHHTTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH--------hC-CCEEEC-C-CCcCHHHHHHHHcCCC
Confidence            78999999999999999999999999 99999987543211100        00 001111 0 1134443332      


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ..|+|+.++...+    . -...++ .++++..+++++-
T Consensus       236 g~D~vid~~g~~~----~-~~~~~~-~l~~~G~iv~~g~  268 (348)
T 2d8a_A          236 GVDVFLEFSGAPK----A-LEQGLQ-AVTPAGRVSLLGL  268 (348)
T ss_dssp             CEEEEEECSCCHH----H-HHHHHH-HEEEEEEEEECCC
T ss_pred             CCCEEEECCCCHH----H-HHHHHH-HHhcCCEEEEEcc
Confidence            4899999986321    1 134677 8999999999874

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.67  E-value=0.0031  Score=57.07  Aligned_cols=98  Identities=13%  Similarity=0.180  Sum_probs=63.1

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----  224 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----  224 (269)
                      -.|.+|.|+|.|.+|+.+++.++.+|+ +|++++++..+......        -| ++..++......++.+.+.     
T Consensus       189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~--------lG-a~~vi~~~~~~~~~~~~v~~~~~~  259 (373)
T 2fzw_A          189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE--------FG-ATECINPQDFSKPIQEVLIEMTDG  259 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH--------HT-CSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH--------cC-CceEeccccccccHHHHHHHHhCC
Confidence            357899999999999999999999999 89999987654211100        01 0111110000124544443     


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCC-cEEEEccC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFA-TYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~g-a~lIN~~R  263 (269)
                      ..|+|+.++... .   . -...++ .++++ ..++.++-
T Consensus       260 g~D~vid~~g~~-~---~-~~~~~~-~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          260 GVDYSFECIGNV-K---V-MRAALE-ACHKGWGVSVVVGV  293 (373)
T ss_dssp             CBSEEEECSCCH-H---H-HHHHHH-TBCTTTCEEEECSC
T ss_pred             CCCEEEECCCcH-H---H-HHHHHH-hhccCCcEEEEEec
Confidence            489999987632 1   1 144677 89999 89988873

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=96.67  E-value=0.0015  Score=61.15  Aligned_cols=76  Identities=12%  Similarity=0.025  Sum_probs=47.1

Q ss_pred             cCCEEEEEecCch--HHHHHHHhcc----CCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh
Q 024297          152 LGKTVFILGFGNI--GVELAKRLRP----FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK  225 (269)
Q Consensus       152 ~g~~vgIiG~G~i--G~~~a~~l~~----~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  225 (269)
                      ...+|+|||.|++  |..+++.+..    .| +|..+|+....-.. ...... .+.     ..........+++++++.
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~-~~~~~~-~l~-----~~~~~I~~TtD~~eAl~d   75 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQK-NEVIGN-HSG-----NGRWRYEAVSTLKKALSA   75 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHH-HHHHHT-TST-----TSCEEEEEESSHHHHHTT
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHH-HHHHHH-HHh-----ccCCeEEEECCHHHHhcC
Confidence            4569999999997  5788776653    47 99999987533110 000000 000     000011123689999999


Q ss_pred             CCEEEEecCC
Q 024297          226 ADVVVCCLSL  235 (269)
Q Consensus       226 aDvvv~~lp~  235 (269)
                      ||+|+.+++-
T Consensus        76 ADfVI~airv   85 (450)
T 3fef_A           76 ADIVIISILP   85 (450)
T ss_dssp             CSEEEECCCS
T ss_pred             CCEEEecccc
Confidence            9999999963

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.67  E-value=0.00068  Score=60.04  Aligned_cols=46  Identities=26%  Similarity=0.408  Sum_probs=34.6

Q ss_pred             CCCCC-CccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCC
Q 024297          141 KKLGV-PTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (269)
Q Consensus       141 ~~w~~-~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~  186 (269)
                      ..|.. .....|++++|.|||.|.+|..+++.|...|. +++.+|...
T Consensus        23 ~~~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           23 KRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             ---------CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             cccChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            34654 34567999999999999999999999999997 899998643

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.67  E-value=0.0036  Score=58.59  Aligned_cols=97  Identities=19%  Similarity=0.197  Sum_probs=66.7

Q ss_pred             cccccCCEEEEEecC----------chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCC
Q 024297          148 GETLLGKTVFILGFG----------NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE  217 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G----------~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (269)
                      +..+.|++|+|+|+.          +-...+++.|...|++|.+||+...+...                ..........
T Consensus       317 ~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~----------------~~~~~~~~~~  380 (446)
T 4a7p_A          317 GGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQAS----------------KMLTDVEFVE  380 (446)
T ss_dssp             TSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHG----------------GGCSSCCBCS
T ss_pred             cccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhHH----------------HhcCCceEec
Confidence            456899999999987          78899999999999999999986532100                0110111235


Q ss_pred             CHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          218 DIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       218 ~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      ++.+.++.+|+|+++.+..+ .+. ++.+.+.+.|+. .++++. |+
T Consensus       381 ~~~~~~~~ad~vvi~t~~~~-f~~-~d~~~~~~~~~~-~~i~D~-r~  423 (446)
T 4a7p_A          381 NPYAAADGADALVIVTEWDA-FRA-LDLTRIKNSLKS-PVLVDL-RN  423 (446)
T ss_dssp             CHHHHHTTBSEEEECSCCTT-TTS-CCHHHHHTTBSS-CBEECS-SC
T ss_pred             ChhHHhcCCCEEEEeeCCHH-hhc-CCHHHHHHhcCC-CEEEEC-CC
Confidence            78899999999999987542 233 455555535653 566664 54

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.65  E-value=0.0011  Score=60.37  Aligned_cols=96  Identities=16%  Similarity=0.212  Sum_probs=61.7

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      .|.+|.|+|.|.+|+.+++.++.+|++|++++++..+......        -| .+..++ ....+.++++....|+|+.
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~--------lG-a~~vi~-~~~~~~~~~~~~g~Dvvid  263 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA--------LG-ADEVVN-SRNADEMAAHLKSFDFILN  263 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------HT-CSEEEE-TTCHHHHHTTTTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------cC-CcEEec-cccHHHHHHhhcCCCEEEE
Confidence            5789999999999999999999999999999987654211100        00 001111 0000112222346899999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ++....    .+ ...++ .++++..+|.++-
T Consensus       264 ~~g~~~----~~-~~~~~-~l~~~G~iv~~G~  289 (369)
T 1uuf_A          264 TVAAPH----NL-DDFTT-LLKRDGTMTLVGA  289 (369)
T ss_dssp             CCSSCC----CH-HHHHT-TEEEEEEEEECCC
T ss_pred             CCCCHH----HH-HHHHH-HhccCCEEEEecc
Confidence            886321    12 34677 8999999998874

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.63  E-value=0.0023  Score=53.12  Aligned_cols=73  Identities=16%  Similarity=0.227  Sum_probs=50.5

Q ss_pred             CEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      ++|.|.| .|.||+.+++.|...|.+|++++|+..+.....          ..+.-...+....+++.++++++|+|+.+
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----------~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   74 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN----------EHLKVKKADVSSLDEVCEVCKGADAVISA   74 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCC----------TTEEEECCCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhcc----------CceEEEEecCCCHHHHHHHhcCCCEEEEe
Confidence            6899999 599999999999999999999999765421100          00001111122345678899999999988


Q ss_pred             cCCC
Q 024297          233 LSLN  236 (269)
Q Consensus       233 lp~t  236 (269)
                      ....
T Consensus        75 a~~~   78 (227)
T 3dhn_A           75 FNPG   78 (227)
T ss_dssp             CCC-
T ss_pred             CcCC
Confidence            7544

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.63  E-value=0.0033  Score=56.90  Aligned_cols=97  Identities=19%  Similarity=0.260  Sum_probs=62.5

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----h
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  225 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  225 (269)
                      .|.+|.|+|.|.+|+.+++.++.+|+ +|++++++..+......        -| ++..++......++.+.+.     .
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~--------lG-a~~vi~~~~~~~~~~~~i~~~t~gg  261 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE--------LG-ATECLNPKDYDKPIYEVICEKTNGG  261 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH--------TT-CSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH--------cC-CcEEEecccccchHHHHHHHHhCCC
Confidence            57899999999999999999999999 89999987654211100        01 0111110000123544443     4


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCC-cEEEEccC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFA-TYVVFMFQ  263 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~g-a~lIN~~R  263 (269)
                      .|+|+-++... ++   + ...++ .++++ ..++.++-
T Consensus       262 ~Dvvid~~g~~-~~---~-~~~~~-~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          262 VDYAVECAGRI-ET---M-MNALQ-STYCGSGVTVVLGL  294 (373)
T ss_dssp             BSEEEECSCCH-HH---H-HHHHH-TBCTTTCEEEECCC
T ss_pred             CCEEEECCCCH-HH---H-HHHHH-HHhcCCCEEEEEcc
Confidence            79999987631 11   1 34677 89999 88888873

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.62  E-value=0.0041  Score=56.38  Aligned_cols=97  Identities=14%  Similarity=0.214  Sum_probs=62.1

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----h
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  225 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  225 (269)
                      .|.+|.|+|.|.+|+.+++.++.+|+ +|++++++..+......        -| ++..++......++.+.+.     .
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~--------lG-a~~vi~~~~~~~~~~~~v~~~~~~g  265 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA--------LG-ATDCLNPRELDKPVQDVITELTAGG  265 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH--------TT-CSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH--------hC-CcEEEccccccchHHHHHHHHhCCC
Confidence            57899999999999999999999999 89999987654211100        01 0111111000123444433     4


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCC-cEEEEccC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFA-TYVVFMFQ  263 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~g-a~lIN~~R  263 (269)
                      .|+|+-++... +   .+ ...++ .++++ ..++.++-
T Consensus       266 ~Dvvid~~G~~-~---~~-~~~~~-~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          266 VDYSLDCAGTA-Q---TL-KAAVD-CTVLGWGSCTVVGA  298 (376)
T ss_dssp             BSEEEESSCCH-H---HH-HHHHH-TBCTTTCEEEECCC
T ss_pred             ccEEEECCCCH-H---HH-HHHHH-HhhcCCCEEEEECC
Confidence            89999987521 1   11 34677 89998 88888763

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=96.61  E-value=0.0018  Score=58.37  Aligned_cols=97  Identities=20%  Similarity=0.187  Sum_probs=62.7

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      .|.+|.|+|.|.+|+.+++.++.+|++|++++++..+.......       -| .+..++ ....+.+.++....|+|+-
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~-------lG-a~~vi~-~~~~~~~~~~~~g~D~vid  250 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQD-------LG-ADDYVI-GSDQAKMSELADSLDYVID  250 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTT-------SC-CSCEEE-TTCHHHHHHSTTTEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH-------cC-Cceeec-cccHHHHHHhcCCCCEEEE
Confidence            68899999999999999999999999999999876542111000       00 011111 0011123333346899999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ++....    . -...++ .++++..++.++-
T Consensus       251 ~~g~~~----~-~~~~~~-~l~~~G~iv~~G~  276 (357)
T 2cf5_A          251 TVPVHH----A-LEPYLS-LLKLDGKLILMGV  276 (357)
T ss_dssp             CCCSCC----C-SHHHHT-TEEEEEEEEECSC
T ss_pred             CCCChH----H-HHHHHH-HhccCCEEEEeCC
Confidence            886321    1 244677 8999999998874

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=96.60  E-value=0.016  Score=52.69  Aligned_cols=142  Identities=14%  Similarity=0.078  Sum_probs=88.3

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec--CchHHHHHHH
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF--GNIGVELAKR  171 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~--G~iG~~~a~~  171 (269)
                      .+...+|+|.|.-+.   +..++  .+|+-++.+.++.               .+..+.|.+|+++|=  +++++.++..
T Consensus       142 la~~s~vPVING~g~---~~HPt--QaL~Dl~Ti~e~~---------------~~~~l~gl~ia~vGD~~~~va~S~~~~  201 (358)
T 4h31_A          142 LGAFAGVPVWNGLTD---EFHPT--QILADFLTMLEHS---------------QGKALADIQFAYLGDARNNVGNSLMVG  201 (358)
T ss_dssp             HHHHSSSCEEESCCS---SCCHH--HHHHHHHHHHHTT---------------TTCCGGGCEEEEESCTTSHHHHHHHHH
T ss_pred             hhhhccCceECCCCc---CCCch--HHHHHHHHHHHHh---------------cCCCcCceEEEecCCCCcccchHHHHH
Confidence            355678999994333   45666  5666666665432               235799999999994  5899999999


Q ss_pred             hccCCCEEEEEcCCCCCccccc-cccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCC----cc--------
Q 024297          172 LRPFGVKIIATKRSWASHSQVS-CQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLN----KQ--------  238 (269)
Q Consensus       172 l~~~G~~V~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t----~~--------  238 (269)
                      +..+|++|.++.+..-...... ..-..++..+|      .......++++.++++|||..-.=-.    ++        
T Consensus       202 ~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g------~~v~~~~d~~eav~~aDvvyt~~w~s~~~~~~~~~~~~~~  275 (358)
T 4h31_A          202 AAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTG------GKITLTENVAEGVQGCDFLYTDVWVSMGESPEAWDERVAL  275 (358)
T ss_dssp             HHHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHT------CEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHH
T ss_pred             HHhcCceEEEeCCcccCCCHHHHHHHHHHHHHcC------CcceeccCHHHHhccCcEEEEEEEEEcccCchhHHHHHHH
Confidence            9999999999986432111000 00000000001      00112468999999999998643211    11        


Q ss_pred             -ccCcCCHHHHhhh-CCCCcEEEEcc
Q 024297          239 -TVKLCSSSLSSKS-MFFATYVVFMF  262 (269)
Q Consensus       239 -t~~li~~~~l~~~-mk~ga~lIN~~  262 (269)
                       ...-++.+.++ . .||+++|.-+.
T Consensus       276 ~~~y~v~~~~l~-~~ak~~~i~mH~L  300 (358)
T 4h31_A          276 MKPYQVNMNVLK-QTGNPNVKFMHCL  300 (358)
T ss_dssp             HGGGCBCHHHHH-HTTCTTCEEEECS
T ss_pred             HhCcccCHHHHH-hcCCCCcEEECCC
Confidence             12457888888 5 47899887654

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=96.59  E-value=0.0032  Score=53.73  Aligned_cols=46  Identities=20%  Similarity=0.302  Sum_probs=32.8

Q ss_pred             CCCCccccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          143 LGVPTGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       143 w~~~~~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      |..+.-....+|++.|.|. |.||+++|+.|...|++|++.+|+..+
T Consensus        12 ~~~~~~~~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~   58 (251)
T 3orf_A           12 SGLVPRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENP   58 (251)
T ss_dssp             ----------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             ccccccccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            4433334556899999995 689999999999999999999998755

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.58  E-value=0.00082  Score=55.16  Aligned_cols=95  Identities=19%  Similarity=0.199  Sum_probs=60.4

Q ss_pred             cCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHH-HH---Hh--
Q 024297          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF-EF---AS--  224 (269)
Q Consensus       152 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-el---l~--  224 (269)
                      .|++|.|+| .|.||+.+++.++..|++|++++++..+... ..       ..|. ....+ ... .+.. .+   ..  
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~-~~-------~~g~-~~~~d-~~~-~~~~~~~~~~~~~~  106 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREM-LS-------RLGV-EYVGD-SRS-VDFADEILELTDGY  106 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHH-HH-------TTCC-SEEEE-TTC-STHHHHHHHHTTTC
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHH-HH-------HcCC-CEEee-CCc-HHHHHHHHHHhCCC
Confidence            578999999 6999999999999999999999986543111 00       0010 01111 111 2222 22   21  


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      ..|+|+.+..  .+    .-...++ .|+++..+|+++-.
T Consensus       107 ~~D~vi~~~g--~~----~~~~~~~-~l~~~G~~v~~g~~  139 (198)
T 1pqw_A          107 GVDVVLNSLA--GE----AIQRGVQ-ILAPGGRFIELGKK  139 (198)
T ss_dssp             CEEEEEECCC--TH----HHHHHHH-TEEEEEEEEECSCG
T ss_pred             CCeEEEECCc--hH----HHHHHHH-HhccCCEEEEEcCC
Confidence            3799998763  11    1245677 89999999999753

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.58  E-value=0.0018  Score=59.50  Aligned_cols=97  Identities=21%  Similarity=0.257  Sum_probs=60.9

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----  224 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----  224 (269)
                      -.|.+|.|+|.|.+|..+++.++.+|+ +|++++++..+......        -| ++..++.  ...++.+.+.     
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~--------lG-a~~vi~~--~~~~~~~~i~~~t~g  280 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE--------LG-ADHVIDP--TKENFVEAVLDYTNG  280 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH--------HT-CSEEECT--TTSCHHHHHHHHTTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH--------cC-CCEEEcC--CCCCHHHHHHHHhCC
Confidence            468899999999999999999999999 99999876544211100        00 0111111  1133433332     


Q ss_pred             -hCCEEEEecCCCccccCcCCHHHHhhhC----CCCcEEEEccC
Q 024297          225 -KADVVVCCLSLNKQTVKLCSSSLSSKSM----FFATYVVFMFQ  263 (269)
Q Consensus       225 -~aDvvv~~lp~t~~t~~li~~~~l~~~m----k~ga~lIN~~R  263 (269)
                       ..|+|+-++.....+.    ...++ .+    +++..++.+|-
T Consensus       281 ~g~D~vid~~g~~~~~~----~~~~~-~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          281 LGAKLFLEATGVPQLVW----PQIEE-VIWRARGINATVAIVAR  319 (404)
T ss_dssp             CCCSEEEECSSCHHHHH----HHHHH-HHHHCSCCCCEEEECSC
T ss_pred             CCCCEEEECCCCcHHHH----HHHHH-HHHhccCCCcEEEEeCC
Confidence             4899999986321111    22344 55    99999998874

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.56  E-value=0.0035  Score=56.24  Aligned_cols=97  Identities=21%  Similarity=0.233  Sum_probs=62.3

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCC-CC---CHHHHHh---
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC-HE---DIFEFAS---  224 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~l~ell~---  224 (269)
                      .|++|.|+|.|.+|+.+++.++.+|++|++++++..+.....        .-| ++..++ ... .+   .+.+...   
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~--------~lG-a~~~~~-~~~~~~~~~~i~~~~~~~~  237 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK--------NCG-ADVTLV-VDPAKEEESSIIERIRSAI  237 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH--------HTT-CSEEEE-CCTTTSCHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH--------HhC-CCEEEc-CcccccHHHHHHHHhcccc
Confidence            578999999999999999999999999999987654421110        001 011111 111 12   2333332   


Q ss_pred             --hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          225 --KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       225 --~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                        ..|+|+.++... .   . -...++ .++++..+|.++-+
T Consensus       238 g~g~D~vid~~g~~-~---~-~~~~~~-~l~~~G~iv~~G~~  273 (352)
T 1e3j_A          238 GDLPNVTIDCSGNE-K---C-ITIGIN-ITRTGGTLMLVGMG  273 (352)
T ss_dssp             SSCCSEEEECSCCH-H---H-HHHHHH-HSCTTCEEEECSCC
T ss_pred             CCCCCEEEECCCCH-H---H-HHHHHH-HHhcCCEEEEEecC
Confidence              489999987632 1   1 134677 89999999998743

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=96.54  E-value=0.0025  Score=57.18  Aligned_cols=68  Identities=15%  Similarity=0.182  Sum_probs=44.6

Q ss_pred             CEEEEEecCchHHH-HHH-Hhcc-CCCEEE-EEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh--CC
Q 024297          154 KTVFILGFGNIGVE-LAK-RLRP-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--AD  227 (269)
Q Consensus       154 ~~vgIiG~G~iG~~-~a~-~l~~-~G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aD  227 (269)
                      .+|||||+|.||+. .+. .+.. -+++|. ++|++..+. ....              .......+.++++++.+  .|
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~-~~~~--------------~~~~~~~~~~~~~ll~~~~~D   67 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAP--------------IYSHIHFTSDLDEVLNDPDVK   67 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGG-GGSG--------------GGTTCEEESCTHHHHTCTTEE
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHH-HHHH--------------hcCCCceECCHHHHhcCCCCC
Confidence            47999999999996 566 4444 488877 677765442 1110              00000134789999986  89


Q ss_pred             EEEEecCCC
Q 024297          228 VVVCCLSLN  236 (269)
Q Consensus       228 vvv~~lp~t  236 (269)
                      +|++++|..
T Consensus        68 ~V~i~tp~~   76 (345)
T 3f4l_A           68 LVVVCTHAD   76 (345)
T ss_dssp             EEEECSCGG
T ss_pred             EEEEcCChH
Confidence            999998843

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=96.53  E-value=0.0013  Score=58.66  Aligned_cols=65  Identities=12%  Similarity=0.171  Sum_probs=45.4

Q ss_pred             CEEEEEecCchHHHHHHHhccCC---CEEE-EEcCCCCCccccccccchhhhccccccccccccC---CCCCHHHHHh--
Q 024297          154 KTVFILGFGNIGVELAKRLRPFG---VKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--  224 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G---~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--  224 (269)
                      .++||||+|.||+..++.++..+   ++|. +++++..+..                 ......+   .+.++++++.  
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~-----------------~~a~~~~~~~~~~~~~~ll~~~   65 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAK-----------------EFAQKHDIPKAYGSYEELAKDP   65 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHH-----------------HHHHHHTCSCEESSHHHHHHCT
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHH-----------------HHHHHcCCCcccCCHHHHhcCC
Confidence            48999999999999999998764   5655 4566543311                 1111111   2478999998  


Q ss_pred             hCCEEEEecCC
Q 024297          225 KADVVVCCLSL  235 (269)
Q Consensus       225 ~aDvvv~~lp~  235 (269)
                      +.|+|++++|.
T Consensus        66 ~vD~V~i~tp~   76 (334)
T 3ohs_X           66 NVEVAYVGTQH   76 (334)
T ss_dssp             TCCEEEECCCG
T ss_pred             CCCEEEECCCc
Confidence            69999999884

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.53  E-value=0.0015  Score=57.86  Aligned_cols=34  Identities=21%  Similarity=0.324  Sum_probs=31.1

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCC--EEEEEcCCC
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSW  186 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~  186 (269)
                      .++|+|||.|.+|..+|..|...|.  +|+.+|++.
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4689999999999999999998888  999999864

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.52  E-value=0.0034  Score=56.98  Aligned_cols=98  Identities=18%  Similarity=0.244  Sum_probs=63.3

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----  224 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----  224 (269)
                      -.|.+|.|+|.|.+|..+++.++.+|+ +|++++++..+......        -| ++..++......++.+.+.     
T Consensus       192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~--------lG-a~~vi~~~~~~~~~~~~i~~~~~g  262 (378)
T 3uko_A          192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK--------FG-VNEFVNPKDHDKPIQEVIVDLTDG  262 (378)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT--------TT-CCEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH--------cC-CcEEEccccCchhHHHHHHHhcCC
Confidence            368899999999999999999999999 89999987765221110        00 0111111101234544444     


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCC-cEEEEccC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFA-TYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~g-a~lIN~~R  263 (269)
                      ..|+|+-++... +   .+ ...++ .++++ ..++.+|-
T Consensus       263 g~D~vid~~g~~-~---~~-~~~~~-~l~~g~G~iv~~G~  296 (378)
T 3uko_A          263 GVDYSFECIGNV-S---VM-RAALE-CCHKGWGTSVIVGV  296 (378)
T ss_dssp             CBSEEEECSCCH-H---HH-HHHHH-TBCTTTCEEEECSC
T ss_pred             CCCEEEECCCCH-H---HH-HHHHH-HhhccCCEEEEEcc
Confidence            389999987621 1   11 34677 89996 88888773

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.51  E-value=0.0026  Score=57.31  Aligned_cols=97  Identities=19%  Similarity=0.234  Sum_probs=60.7

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHH-HHH----h
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIF-EFA----S  224 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~-ell----~  224 (269)
                      .|.+|.|+|.|.+|+.+++.++.+|+ +|++++++..+.....        .-| ++..++... ...++. ++.    .
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~--------~lG-a~~vi~~~~~~~~~~~~~i~~~~~~  241 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK--------EIG-ADLVLQISKESPQEIARKVEGQLGC  241 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH--------HTT-CSEEEECSSCCHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH--------HhC-CCEEEcCcccccchHHHHHHHHhCC
Confidence            57899999999999999999999999 9999997654321110        001 011111000 001122 221    2


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ..|+|+.++... .   .+ ...++ .++++..++.++-
T Consensus       242 g~D~vid~~g~~-~---~~-~~~~~-~l~~~G~iv~~G~  274 (356)
T 1pl8_A          242 KPEVTIECTGAE-A---SI-QAGIY-ATRSGGTLVLVGL  274 (356)
T ss_dssp             CCSEEEECSCCH-H---HH-HHHHH-HSCTTCEEEECSC
T ss_pred             CCCEEEECCCCh-H---HH-HHHHH-HhcCCCEEEEEec
Confidence            489999987632 1   11 34677 8999999999874

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.51  E-value=0.0041  Score=54.95  Aligned_cols=83  Identities=14%  Similarity=0.045  Sum_probs=54.7

Q ss_pred             ccccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-
Q 024297          147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-  224 (269)
Q Consensus       147 ~~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-  224 (269)
                      ....+.+++|.|.|. |.||+++++.|...|++|++++|+..........   .    ..+.-...+....+++.+++. 
T Consensus        14 ~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~---l----~~v~~~~~Dl~d~~~~~~~~~~   86 (330)
T 2pzm_A           14 LVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPP---V----AGLSVIEGSVTDAGLLERAFDS   86 (330)
T ss_dssp             CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCS---C----TTEEEEECCTTCHHHHHHHHHH
T ss_pred             CcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhc---c----CCceEEEeeCCCHHHHHHHHhh
Confidence            346789999999996 9999999999999999999999865432100000   0    000001111112345778888 


Q ss_pred             -hCCEEEEecCCC
Q 024297          225 -KADVVVCCLSLN  236 (269)
Q Consensus       225 -~aDvvv~~lp~t  236 (269)
                       ..|+|+.+....
T Consensus        87 ~~~D~vih~A~~~   99 (330)
T 2pzm_A           87 FKPTHVVHSAAAY   99 (330)
T ss_dssp             HCCSEEEECCCCC
T ss_pred             cCCCEEEECCccC
Confidence             899999887643

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.51  E-value=0.00081  Score=60.08  Aligned_cols=74  Identities=19%  Similarity=0.236  Sum_probs=46.1

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCCccccccccchhhhcccccccccccc--C--CCCCHHHHHhhC
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--G--CHEDIFEFASKA  226 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~l~ell~~a  226 (269)
                      -++|+|||.|.||..+|..++..|.  +|..+|++.... ....  .++       .+.....  .  -..+..+.+++|
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~-~~~~--~dl-------~~~~~~~~~~~~i~~~~~~al~~a   75 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKA-IGDA--MDF-------NHGKVFAPKPVDIWHGDYDDCRDA   75 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH-HHHH--HHH-------HHHTTSSSSCCEEEECCGGGTTTC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchH-HHHH--hhH-------HHHhhhcCCCeEEEcCcHHHhCCC
Confidence            3699999999999999999886564  899999875321 1100  000       0000000  0  001224568999


Q ss_pred             CEEEEecCCC
Q 024297          227 DVVVCCLSLN  236 (269)
Q Consensus       227 Dvvv~~lp~t  236 (269)
                      |+|+++.|..
T Consensus        76 DvViia~~~~   85 (316)
T 1ldn_A           76 DLVVICAGAN   85 (316)
T ss_dssp             SEEEECCSCC
T ss_pred             CEEEEcCCCC
Confidence            9999998743

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.50  E-value=0.0034  Score=56.36  Aligned_cols=105  Identities=12%  Similarity=0.098  Sum_probs=59.5

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      ...++|+|||.|.+|..+|..|...|. +|..+|++..+.......-.....+.+    .........+. +.++.||+|
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~----~~~~v~~t~d~-~a~~~aDiV   79 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDG----FDAKFTGANDY-AAIEGADVV   79 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHT----CCCCEEEESSG-GGGTTCSEE
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcC----CCCEEEEeCCH-HHHCCCCEE
Confidence            456799999999999999999987777 999999876542100000000000000    00000011344 778999999


Q ss_pred             EEecCCCccccCc-----C--CHH-------HHhhhCCCCcEEEEcc
Q 024297          230 VCCLSLNKQTVKL-----C--SSS-------LSSKSMFFATYVVFMF  262 (269)
Q Consensus       230 v~~lp~t~~t~~l-----i--~~~-------~l~~~mk~ga~lIN~~  262 (269)
                      +++.+. |...+.     +  |..       .+. ...|++++|+++
T Consensus        80 Iiaag~-p~k~G~~R~dl~~~N~~i~~~i~~~i~-~~~p~a~iivvt  124 (324)
T 3gvi_A           80 IVTAGV-PRKPGMSRDDLLGINLKVMEQVGAGIK-KYAPEAFVICIT  124 (324)
T ss_dssp             EECCSC-CCC-----CHHHHHHHHHHHHHHHHHH-HHCTTCEEEECC
T ss_pred             EEccCc-CCCCCCCHHHHHHhhHHHHHHHHHHHH-HHCCCeEEEecC
Confidence            999762 332222     1  111       222 235788988876

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=96.49  E-value=0.0024  Score=57.10  Aligned_cols=102  Identities=13%  Similarity=0.145  Sum_probs=57.0

Q ss_pred             CEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      .+|+|+|.|.||..+|..+...|.  +|..+|++..+.....-.-.....+.+. ....    ...+..+.+++||+|++
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~-~~~v----~~~~~~~a~~~aDvVii   75 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGF-DTRV----TGTNDYGPTEDSDVCII   75 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTC-CCEE----EEESSSGGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCC-CcEE----EECCCHHHhCCCCEEEE
Confidence            479999999999999999887676  9999998765421000000000000000 0000    00133567899999999


Q ss_pred             ecCCCccccCc-----C--CH-------HHHhhhCCCCcEEEEcc
Q 024297          232 CLSLNKQTVKL-----C--SS-------SLSSKSMFFATYVVFMF  262 (269)
Q Consensus       232 ~lp~t~~t~~l-----i--~~-------~~l~~~mk~ga~lIN~~  262 (269)
                      +.+. +...+.     +  |.       +.+. ...|+++++|++
T Consensus        76 ~ag~-~~kpG~~R~dl~~~N~~i~~~i~~~i~-~~~p~a~vivvt  118 (314)
T 3nep_X           76 TAGL-PRSPGMSRDDLLAKNTEIVGGVTEQFV-EGSPDSTIIVVA  118 (314)
T ss_dssp             CCCC--------CHHHHHHHHHHHHHHHHHHH-TTCTTCEEEECC
T ss_pred             CCCC-CCCCCCCHHHHHHhhHHHHHHHHHHHH-HhCCCcEEEecC
Confidence            9763 322222     1  11       1233 346788999886

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=96.49  E-value=0.018  Score=53.33  Aligned_cols=101  Identities=19%  Similarity=0.200  Sum_probs=61.6

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEE-EEcCCCCCccccccccchhhhccccccccc----cccCC----CCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLV----DEKGC----HED  218 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~  218 (269)
                      +.++.|++|.|.|+|++|+.+|+.|...|++|+ +.|.+..           ...++|+-.+..    ...+.    ..+
T Consensus       213 g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~-----------i~dp~Gld~~~l~~~~~~~g~v~~~~~~  281 (419)
T 3aoe_E          213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGG-----------MYAPEGLDVAEVLSAYEATGSLPRLDLA  281 (419)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEE-----------EECTTCCCHHHHHHHHHHHSSCSCCCBC
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCe-----------EECCCCCCHHHHHHHHHhhCCcceeecc
Confidence            457999999999999999999999999999999 4443211           001122100000    00000    001


Q ss_pred             HHHHH-hhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297          219 IFEFA-SKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       219 l~ell-~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      -++++ -.||+++-|.     +.+.|+.+... .++ -.+++.-+=+++
T Consensus       282 ~~e~~~~~~DVliP~A-----~~n~i~~~~A~-~l~-ak~V~EgAN~p~  323 (419)
T 3aoe_E          282 PEEVFGLEAEVLVLAA-----REGALDGDRAR-QVQ-AQAVVEVANFGL  323 (419)
T ss_dssp             TTTGGGSSCSEEEECS-----CTTCBCHHHHT-TCC-CSEEEECSTTCB
T ss_pred             chhhhccCceEEEecc-----cccccccchHh-hCC-ceEEEECCCCcC
Confidence            12233 3899999884     45778888777 774 346666665553

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.49  E-value=0.0014  Score=58.54  Aligned_cols=96  Identities=17%  Similarity=0.119  Sum_probs=62.1

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh----hC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS----KA  226 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~----~a  226 (269)
                      -.|++|.|+|.|.+|..+++.++.+|++|++++++..+.....        .-| .+..++.  ...++.+.+.    ..
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~--------~lG-a~~~i~~--~~~~~~~~~~~~~g~~  233 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLAR--------RLG-AEVAVNA--RDTDPAAWLQKEIGGA  233 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHH--------HTT-CSEEEET--TTSCHHHHHHHHHSSE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH--------HcC-CCEEEeC--CCcCHHHHHHHhCCCC
Confidence            3678999999999999999999999999999998654421110        001 0111111  1134443333    57


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |+++.+.... +   .+ ...++ .++++..++.++-
T Consensus       234 d~vid~~g~~-~---~~-~~~~~-~l~~~G~iv~~G~  264 (340)
T 3s2e_A          234 HGVLVTAVSP-K---AF-SQAIG-MVRRGGTIALNGL  264 (340)
T ss_dssp             EEEEESSCCH-H---HH-HHHHH-HEEEEEEEEECSC
T ss_pred             CEEEEeCCCH-H---HH-HHHHH-HhccCCEEEEeCC
Confidence            9998886521 1   11 34667 8999999998863

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=96.48  E-value=0.0025  Score=53.69  Aligned_cols=67  Identities=9%  Similarity=0.050  Sum_probs=44.4

Q ss_pred             CEEEEEecCchHHHHHHH--hccCCCEEE-EEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-hCCEE
Q 024297          154 KTVFILGFGNIGVELAKR--LRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-KADVV  229 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~--l~~~G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDvv  229 (269)
                      .+|+|+|.|++|+++++.  ... |++|. ++|.++.+.....              ....-. ..++++++++ +.|+|
T Consensus        81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i--------------~gv~V~-~~~dl~ell~~~ID~V  144 (211)
T 2dt5_A           81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPV--------------RGGVIE-HVDLLPQRVPGRIEIA  144 (211)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEE--------------TTEEEE-EGGGHHHHSTTTCCEE
T ss_pred             CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhh--------------cCCeee-cHHhHHHHHHcCCCEE
Confidence            589999999999999995  335 88854 5565554321100              000101 2467889887 59999


Q ss_pred             EEecCCC
Q 024297          230 VCCLSLN  236 (269)
Q Consensus       230 v~~lp~t  236 (269)
                      ++++|..
T Consensus       145 iIA~Ps~  151 (211)
T 2dt5_A          145 LLTVPRE  151 (211)
T ss_dssp             EECSCHH
T ss_pred             EEeCCch
Confidence            9999844

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.48  E-value=0.0021  Score=57.58  Aligned_cols=96  Identities=14%  Similarity=0.093  Sum_probs=63.0

Q ss_pred             cCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----h
Q 024297          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  225 (269)
Q Consensus       152 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  225 (269)
                      .|++|.|+|. |.||+.+++.++..|++|++++++..+.....        .-| ..... ......++.+.+.     .
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~--------~~g-~~~~~-d~~~~~~~~~~~~~~~~~~  238 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFR--------SIG-GEVFI-DFTKEKDIVGAVLKATDGG  238 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHH--------HTT-CCEEE-ETTTCSCHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHH--------HcC-CceEE-ecCccHhHHHHHHHHhCCC
Confidence            5789999999 89999999999999999999998765421110        001 01111 1111245555554     4


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      .|+|+.+....+    . -...++ .|+++..+|+++-
T Consensus       239 ~D~vi~~~g~~~----~-~~~~~~-~l~~~G~iv~~g~  270 (347)
T 2hcy_A          239 AHGVINVSVSEA----A-IEASTR-YVRANGTTVLVGM  270 (347)
T ss_dssp             EEEEEECSSCHH----H-HHHHTT-SEEEEEEEEECCC
T ss_pred             CCEEEECCCcHH----H-HHHHHH-HHhcCCEEEEEeC
Confidence            799998875211    1 234567 8899999999874

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=96.47  E-value=0.0015  Score=63.06  Aligned_cols=37  Identities=27%  Similarity=0.539  Sum_probs=34.1

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  185 (269)
                      ..|.+++|.|||.|.+|..+|+.|...|. +++.+|..
T Consensus       323 ~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D  360 (598)
T 3vh1_A          323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG  360 (598)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            67999999999999999999999999998 79999753

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.47  E-value=0.003  Score=51.98  Aligned_cols=97  Identities=16%  Similarity=0.118  Sum_probs=58.7

Q ss_pred             CEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      ++|.|+| .|.||+.+++.|...|.+|++++|+..+... .        ..+ +.-...+....++  +.+..+|+|+.+
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~-~--------~~~-~~~~~~D~~d~~~--~~~~~~d~vi~~   68 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQ-T--------HKD-INILQKDIFDLTL--SDLSDQNVVVDA   68 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHH-H--------CSS-SEEEECCGGGCCH--HHHTTCSEEEEC
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhh-c--------cCC-CeEEeccccChhh--hhhcCCCEEEEC
Confidence            4789999 5999999999999999999999997643110 0        000 0001111111122  778999999999


Q ss_pred             cCCCccccC---cCCHHHHhhhCCC--CcEEEEccC
Q 024297          233 LSLNKQTVK---LCSSSLSSKSMFF--ATYVVFMFQ  263 (269)
Q Consensus       233 lp~t~~t~~---li~~~~l~~~mk~--ga~lIN~~R  263 (269)
                      ...+.....   ......++ .|+.  ...+|+++-
T Consensus        69 ag~~~~~~~~~~~~~~~l~~-a~~~~~~~~~v~~SS  103 (221)
T 3ew7_A           69 YGISPDEAEKHVTSLDHLIS-VLNGTVSPRLLVVGG  103 (221)
T ss_dssp             CCSSTTTTTSHHHHHHHHHH-HHCSCCSSEEEEECC
T ss_pred             CcCCccccchHHHHHHHHHH-HHHhcCCceEEEEec
Confidence            875433211   11233555 5554  356777654

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.47  E-value=0.0026  Score=56.33  Aligned_cols=99  Identities=9%  Similarity=0.023  Sum_probs=59.6

Q ss_pred             CEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCCccc-c--ccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQ-V--SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      .+|+|||.|.+|..+|..|...|.  +|..+|++...... .  ..+ ....++..      .......+ .+.++.||+
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~-~~~~~~~~------~~i~~t~d-~~a~~~aDi   72 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAH-AAAGIDKY------PKIVGGAD-YSLLKGSEI   72 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHH-HHHTTTCC------CEEEEESC-GGGGTTCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHh-hhhhcCCC------CEEEEeCC-HHHhCCCCE
Confidence            479999999999999999987777  99999987643110 0  000 00000000      00001134 778999999


Q ss_pred             EEEecCCCccccCc-----C--CH-------HHHhhhCCCCcEEEEcc
Q 024297          229 VVCCLSLNKQTVKL-----C--SS-------SLSSKSMFFATYVVFMF  262 (269)
Q Consensus       229 vv~~lp~t~~t~~l-----i--~~-------~~l~~~mk~ga~lIN~~  262 (269)
                      |+++.+. +...+.     +  |.       +.+. ...|++++|+++
T Consensus        73 VViaag~-~~kpG~~R~dl~~~N~~i~~~i~~~i~-~~~p~a~iivvs  118 (294)
T 1oju_A           73 IVVTAGL-ARKPGMTRLDLAHKNAGIIKDIAKKIV-ENAPESKILVVT  118 (294)
T ss_dssp             EEECCCC-CCCSSCCHHHHHHHHHHHHHHHHHHHH-TTSTTCEEEECS
T ss_pred             EEECCCC-CCCCCCcHHHHHHHHHHHHHHHHHHHH-hhCCCeEEEEeC
Confidence            9999763 322222     1  11       1234 457889999886

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=96.47  E-value=0.0013  Score=57.76  Aligned_cols=93  Identities=13%  Similarity=0.148  Sum_probs=60.3

Q ss_pred             cCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCC-CCHHHHHhhCCEE
Q 024297          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH-EDIFEFASKADVV  229 (269)
Q Consensus       152 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ell~~aDvv  229 (269)
                      .|++|.|+|. |.+|+.+++.++.+|++|++++++..+......        -| .+...+ . .. .++.+.+...|++
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~--------~g-a~~~~~-~-~~~~~~~~~~~~~d~v  193 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA--------LG-AEEAAT-Y-AEVPERAKAWGGLDLV  193 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH--------TT-CSEEEE-G-GGHHHHHHHTTSEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh--------cC-CCEEEE-C-CcchhHHHHhcCceEE
Confidence            5789999998 999999999999999999999987554211100        00 000110 0 01 1233334678999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +. +.. +    . -...++ .|+++..++.++-
T Consensus       194 id-~g~-~----~-~~~~~~-~l~~~G~~v~~g~  219 (302)
T 1iz0_A          194 LE-VRG-K----E-VEESLG-LLAHGGRLVYIGA  219 (302)
T ss_dssp             EE-CSC-T----T-HHHHHT-TEEEEEEEEEC--
T ss_pred             EE-CCH-H----H-HHHHHH-hhccCCEEEEEeC
Confidence            98 753 1    1 245677 8999999998874

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=96.46  E-value=0.0025  Score=56.90  Aligned_cols=82  Identities=18%  Similarity=0.183  Sum_probs=51.7

Q ss_pred             CEEEEEecCchHHHHHHHhccC-CCEE-EEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPF-GVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~-G~~V-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      .+|+|||+|+||+.+++.+... ++++ .++|++.... ..      +    |     ..   ...++++++.++|+|++
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~-~~------~----g-----v~---~~~d~~~ll~~~DvVii   64 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD-TK------T----P-----VF---DVADVDKHADDVDVLFL   64 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS-SS------S----C-----EE---EGGGGGGTTTTCSEEEE
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHh-hc------C----C-----Cc---eeCCHHHHhcCCCEEEE
Confidence            4799999999999999999876 6775 4677654331 00      0    0     00   12455666688999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEE
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVF  260 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN  260 (269)
                      +.|....     -..... .++.|.-+|.
T Consensus        65 atp~~~h-----~~~~~~-al~aG~~Vv~   87 (320)
T 1f06_A           65 CMGSATD-----IPEQAP-KFAQFACTVD   87 (320)
T ss_dssp             CSCTTTH-----HHHHHH-HHTTTSEEEC
T ss_pred             cCCcHHH-----HHHHHH-HHHCCCEEEE
Confidence            9874321     122233 5666765443

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.46  E-value=0.002  Score=57.81  Aligned_cols=94  Identities=21%  Similarity=0.184  Sum_probs=60.9

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----  224 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----  224 (269)
                      -.|++|.|+|. |.||+.+++.++.+|++|++++++..+......        -| .+...+ . . .++.+.+.     
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~--------~g-a~~v~~-~-~-~~~~~~v~~~~~~  225 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKS--------VG-ADIVLP-L-E-EGWAKAVREATGG  225 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------HT-CSEEEE-S-S-TTHHHHHHHHTTT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh--------cC-CcEEec-C-c-hhHHHHHHHHhCC
Confidence            36889999998 999999999999999999999986654211100        00 011111 1 1 33433332     


Q ss_pred             -hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 -KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 -~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                       ..|+++.+....     . -...+. .++++..++.+|.
T Consensus       226 ~g~Dvvid~~g~~-----~-~~~~~~-~l~~~G~iv~~G~  258 (342)
T 4eye_A          226 AGVDMVVDPIGGP-----A-FDDAVR-TLASEGRLLVVGF  258 (342)
T ss_dssp             SCEEEEEESCC-------C-HHHHHH-TEEEEEEEEEC--
T ss_pred             CCceEEEECCchh-----H-HHHHHH-hhcCCCEEEEEEc
Confidence             489999987631     1 245677 8999999998873

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.45  E-value=0.0044  Score=55.36  Aligned_cols=74  Identities=15%  Similarity=0.206  Sum_probs=45.3

Q ss_pred             CEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv  230 (269)
                      .+|+|||.|.+|..++..+...|.  +|..+|.+..+.....   .++  .+..  ....... ...+ .+.++.||+|+
T Consensus         8 ~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~---~dl--~~~~--~~~~~~~i~~~~-~~a~~~aDvVi   79 (318)
T 1y6j_A            8 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEA---MDI--NHGL--PFMGQMSLYAGD-YSDVKDCDVIV   79 (318)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHH---HHH--TTSC--CCTTCEEEC--C-GGGGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHH---HHH--HHhH--HhcCCeEEEECC-HHHhCCCCEEE
Confidence            589999999999999999988787  9999998764421100   000  0000  0000000 1123 45689999999


Q ss_pred             EecCC
Q 024297          231 CCLSL  235 (269)
Q Consensus       231 ~~lp~  235 (269)
                      ++.+.
T Consensus        80 i~~g~   84 (318)
T 1y6j_A           80 VTAGA   84 (318)
T ss_dssp             ECCCC
T ss_pred             EcCCC
Confidence            99874

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=96.45  E-value=0.0026  Score=57.25  Aligned_cols=66  Identities=14%  Similarity=0.070  Sum_probs=45.5

Q ss_pred             CEEEEEecCchHHH-HHHHhccC-CCEEE-EEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh--CCE
Q 024297          154 KTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADV  228 (269)
Q Consensus       154 ~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDv  228 (269)
                      .+|||||+|.+|+. .+..++.. +++|. ++|++..+..                 ........+.++++++.+  .|+
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~-----------------~~~~~~~~~~~~~~ll~~~~vD~   70 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH-----------------ADWPAIPVVSDPQMLFNDPSIDL   70 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH-----------------TTCSSCCEESCHHHHHHCSSCCE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH-----------------hhCCCCceECCHHHHhcCCCCCE
Confidence            48999999999997 78877766 78876 5565543210                 000001134789999986  899


Q ss_pred             EEEecCCC
Q 024297          229 VVCCLSLN  236 (269)
Q Consensus       229 vv~~lp~t  236 (269)
                      |+++.|..
T Consensus        71 V~i~tp~~   78 (352)
T 3kux_A           71 IVIPTPND   78 (352)
T ss_dssp             EEECSCTT
T ss_pred             EEEeCChH
Confidence            99998844

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.45  E-value=0.0032  Score=56.42  Aligned_cols=37  Identities=22%  Similarity=0.215  Sum_probs=31.9

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  188 (269)
                      ..++|+|||.|.+|..+|..+...|. +|..+|++..+
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~   41 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGM   41 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHH
Confidence            45799999999999999999987666 99999987654

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.43  E-value=0.0016  Score=59.20  Aligned_cols=96  Identities=25%  Similarity=0.269  Sum_probs=63.1

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh----
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK----  225 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~----  225 (269)
                      -.|.+|.|+|.|.+|+.+++.++.+|+ +|++++++..+.....        .-| ++..++ . ...++.+.+.+    
T Consensus       181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~--------~lG-a~~vi~-~-~~~~~~~~i~~~~~~  249 (370)
T 4ej6_A          181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAE--------EVG-ATATVD-P-SAGDVVEAIAGPVGL  249 (370)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH--------HHT-CSEEEC-T-TSSCHHHHHHSTTSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH--------HcC-CCEEEC-C-CCcCHHHHHHhhhhc
Confidence            357899999999999999999999999 8999987654421100        000 011111 0 12455555544    


Q ss_pred             ----CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          226 ----ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       226 ----aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                          .|+|+-++.. ++   .+ ...++ .++++..++.+|-
T Consensus       250 ~~gg~Dvvid~~G~-~~---~~-~~~~~-~l~~~G~vv~~G~  285 (370)
T 4ej6_A          250 VPGGVDVVIECAGV-AE---TV-KQSTR-LAKAGGTVVILGV  285 (370)
T ss_dssp             STTCEEEEEECSCC-HH---HH-HHHHH-HEEEEEEEEECSC
T ss_pred             cCCCCCEEEECCCC-HH---HH-HHHHH-HhccCCEEEEEec
Confidence                7999988752 11   11 34677 8999999998874

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.43  E-value=0.0021  Score=58.08  Aligned_cols=95  Identities=16%  Similarity=0.129  Sum_probs=62.6

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHH----HHh--
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE----FAS--  224 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll~--  224 (269)
                      -.|++|.|+|.|.+|..+++.++.+|++|++++++..+......        -| ++..++  ....++.+    +..  
T Consensus       188 ~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~--------lG-a~~vi~--~~~~~~~~~v~~~~~g~  256 (363)
T 3uog_A          188 RAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFA--------LG-ADHGIN--RLEEDWVERVYALTGDR  256 (363)
T ss_dssp             CTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH--------HT-CSEEEE--TTTSCHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHH--------cC-CCEEEc--CCcccHHHHHHHHhCCC
Confidence            36889999999999999999999999999999976543211100        01 011121  11123333    332  


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ..|+|+-++. . +   . -...++ .++++..++.+|-
T Consensus       257 g~D~vid~~g-~-~---~-~~~~~~-~l~~~G~iv~~G~  288 (363)
T 3uog_A          257 GADHILEIAG-G-A---G-LGQSLK-AVAPDGRISVIGV  288 (363)
T ss_dssp             CEEEEEEETT-S-S---C-HHHHHH-HEEEEEEEEEECC
T ss_pred             CceEEEECCC-h-H---H-HHHHHH-HhhcCCEEEEEec
Confidence            5899999876 2 1   1 244677 8999999998874

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.42  E-value=0.003  Score=56.13  Aligned_cols=74  Identities=16%  Similarity=0.087  Sum_probs=46.8

Q ss_pred             CEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccc--cCCCCCHHHHHhhCCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE--KGCHEDIFEFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~aDvvv  230 (269)
                      ++|+|||.|.+|..++..+...|. +|..+|.+..+.....   .++  .++. ......  .....+. +.++.||+|+
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~---~dl--~~~~-~~~~~~~~i~~t~d~-~a~~~aD~Vi   75 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKA---LDL--YEAS-PIEGFDVRVTGTNNY-ADTANSDVIV   75 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHH---HHH--HTTH-HHHTCCCCEEEESCG-GGGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHH---HhH--HHhH-hhcCCCeEEEECCCH-HHHCCCCEEE
Confidence            589999999999999999988886 8999998754311000   000  0000 000000  0011455 6689999999


Q ss_pred             EecC
Q 024297          231 CCLS  234 (269)
Q Consensus       231 ~~lp  234 (269)
                      ++.+
T Consensus        76 ~a~g   79 (309)
T 1ur5_A           76 VTSG   79 (309)
T ss_dssp             ECCC
T ss_pred             EcCC
Confidence            9986

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=96.42  E-value=0.002  Score=58.36  Aligned_cols=65  Identities=15%  Similarity=0.206  Sum_probs=44.9

Q ss_pred             CEEEEEecCchHHH-HHHHhccC-CCEEE-EEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh--hCCE
Q 024297          154 KTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV  228 (269)
Q Consensus       154 ~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDv  228 (269)
                      .+|||||+|.||+. .++.++.. +++|. ++|++..+..                 ........+.++++++.  +.|+
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~~~~~~~~~~~~~ll~~~~~D~   70 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVK-----------------RDLPDVTVIASPEAAVQHPDVDL   70 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH-----------------HHCTTSEEESCHHHHHTCTTCSE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH-----------------hhCCCCcEECCHHHHhcCCCCCE
Confidence            48999999999997 77777766 78876 5566543210                 00000013478999998  7899


Q ss_pred             EEEecCC
Q 024297          229 VVCCLSL  235 (269)
Q Consensus       229 vv~~lp~  235 (269)
                      |+++.|.
T Consensus        71 V~i~tp~   77 (364)
T 3e82_A           71 VVIASPN   77 (364)
T ss_dssp             EEECSCG
T ss_pred             EEEeCCh
Confidence            9999884

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.41  E-value=0.0033  Score=56.68  Aligned_cols=67  Identities=15%  Similarity=0.121  Sum_probs=44.3

Q ss_pred             cCCEEEEEecCchHHHHHHHhccC--------CCEEEE-EcCCCCCccccccccchhhhccccccccccccC---CCCCH
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPF--------GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDI  219 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~--------G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l  219 (269)
                      +--+|||||+|.||+.-++.++.+        +++|.+ +|++..+..                 ....+++   .+.++
T Consensus        24 kkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~-----------------~~a~~~g~~~~y~d~   86 (393)
T 4fb5_A           24 KPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAE-----------------ARAGEFGFEKATADW   86 (393)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHH-----------------HHHHHHTCSEEESCH
T ss_pred             CCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHH-----------------HHHHHhCCCeecCCH
Confidence            345899999999999887766653        567665 566554421                 1112222   24789


Q ss_pred             HHHHh--hCCEEEEecCC
Q 024297          220 FEFAS--KADVVVCCLSL  235 (269)
Q Consensus       220 ~ell~--~aDvvv~~lp~  235 (269)
                      +++|+  +.|+|+++.|.
T Consensus        87 ~ell~~~~iDaV~IatP~  104 (393)
T 4fb5_A           87 RALIADPEVDVVSVTTPN  104 (393)
T ss_dssp             HHHHHCTTCCEEEECSCG
T ss_pred             HHHhcCCCCcEEEECCCh
Confidence            99997  57999999883

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=96.40  E-value=0.005  Score=55.66  Aligned_cols=93  Identities=15%  Similarity=0.029  Sum_probs=53.9

Q ss_pred             CEEEEEe-cCchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILG-FGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      .+|+|+| +|.||+.+++.|.... ++|.++........ ...  +.+....|.     .. ....++++ +..+|+|+.
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~-~~~--~~~~~~~g~-----~~-~~~~~~~~-~~~vDvV~~   74 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGE-PVH--FVHPNLRGR-----TN-LKFVPPEK-LEPADILVL   74 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTS-BGG--GTCGGGTTT-----CC-CBCBCGGG-CCCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCc-hhH--HhCchhcCc-----cc-ccccchhH-hcCCCEEEE
Confidence            5899999 8999999999998764 58777765322211 110  000000000     00 01122333 478999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ++|...      ..+.....++.|+.+|..+
T Consensus        75 a~g~~~------s~~~a~~~~~aG~~VId~S   99 (345)
T 2ozp_A           75 ALPHGV------FAREFDRYSALAPVLVDLS   99 (345)
T ss_dssp             CCCTTH------HHHTHHHHHTTCSEEEECS
T ss_pred             cCCcHH------HHHHHHHHHHCCCEEEEcC
Confidence            998442      2333332567788888876

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.39  E-value=0.0029  Score=56.10  Aligned_cols=75  Identities=11%  Similarity=0.081  Sum_probs=49.4

Q ss_pred             ccccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh
Q 024297          147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK  225 (269)
Q Consensus       147 ~~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  225 (269)
                      ......+++|.|.|. |.||+.+++.|...|++|++++|+......               .....+....+++.+++..
T Consensus        13 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~---------------~~~~~Dl~d~~~~~~~~~~   77 (347)
T 4id9_A           13 GLVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGG---------------EEVVGSLEDGQALSDAIMG   77 (347)
T ss_dssp             --------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCC---------------SEEESCTTCHHHHHHHHTT
T ss_pred             cccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCc---------------cEEecCcCCHHHHHHHHhC
Confidence            346789999999997 999999999999999999999987643100               0111112233567888999


Q ss_pred             CCEEEEecCCC
Q 024297          226 ADVVVCCLSLN  236 (269)
Q Consensus       226 aDvvv~~lp~t  236 (269)
                      +|+|+.+....
T Consensus        78 ~d~vih~A~~~   88 (347)
T 4id9_A           78 VSAVLHLGAFM   88 (347)
T ss_dssp             CSEEEECCCCC
T ss_pred             CCEEEECCccc
Confidence            99999876544

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=96.38  E-value=0.0021  Score=56.98  Aligned_cols=83  Identities=19%  Similarity=0.151  Sum_probs=49.9

Q ss_pred             CEEEEEecCchHHHHHHHhcc-CCCEEE-EEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRP-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~-~G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      .+|||||+|.||+.+++.++. -+++|. ++|+++.+...           .|     .. ....+++.+. .++|+|++
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~-----------~g-----~~-~~~~~~l~~~-~~~DvVii   71 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF-----------EL-----QP-FRVVSDIEQL-ESVDVALV   71 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC------------------CC-----TT-SCEESSGGGS-SSCCEEEE
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH-----------cC-----CC-cCCHHHHHhC-CCCCEEEE
Confidence            589999999999999999886 478887 57876543110           01     00 1123455454 78999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEE
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVF  260 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN  260 (269)
                      +.|...   +.  +-... .++.|.-+|.
T Consensus        72 atp~~~---h~--~~~~~-al~aG~~Vi~   94 (304)
T 3bio_A           72 CSPSRE---VE--RTALE-ILKKGICTAD   94 (304)
T ss_dssp             CSCHHH---HH--HHHHH-HHTTTCEEEE
T ss_pred             CCCchh---hH--HHHHH-HHHcCCeEEE
Confidence            987322   21  11223 5666766664

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=96.37  E-value=0.0015  Score=58.45  Aligned_cols=94  Identities=20%  Similarity=0.188  Sum_probs=62.9

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----h
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  225 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  225 (269)
                      .|++|.|+|.|.+|+.+++.++.+|+ +|++++++..+....... .         +..++.  ...++.+.+.     .
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a---------~~v~~~--~~~~~~~~~~~~~~~g  231 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A---------DRLVNP--LEEDLLEVVRRVTGSG  231 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C---------SEEECT--TTSCHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H---------HhccCc--CccCHHHHHHHhcCCC
Confidence            78999999999999999999999999 999999865432111000 0         011110  1134544443     4


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      .|+|+.++...+.     -...++ .|+++..++.+|-
T Consensus       232 ~D~vid~~g~~~~-----~~~~~~-~l~~~G~iv~~g~  263 (343)
T 2dq4_A          232 VEVLLEFSGNEAA-----IHQGLM-ALIPGGEARILGI  263 (343)
T ss_dssp             EEEEEECSCCHHH-----HHHHHH-HEEEEEEEEECCC
T ss_pred             CCEEEECCCCHHH-----HHHHHH-HHhcCCEEEEEec
Confidence            7999999863111     144677 8999999998874

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.35  E-value=0.0066  Score=55.16  Aligned_cols=96  Identities=17%  Similarity=0.131  Sum_probs=56.1

Q ss_pred             cCCEEEEEe-cCchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          152 LGKTVFILG-FGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       152 ~g~~vgIiG-~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      ...+|+|+| +|.+|+.+++.|.... ++|.++....... ....  +.+....|..   ..+. ...+ ++.+..+|+|
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g-~~~~--~~~~~~~~~v---~~dl-~~~~-~~~~~~vDvV   86 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAG-QSME--SVFPHLRAQK---LPTL-VSVK-DADFSTVDAV   86 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTT-SCHH--HHCGGGTTSC---CCCC-BCGG-GCCGGGCSEE
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcC-CCHH--HhCchhcCcc---cccc-eecc-hhHhcCCCEE
Confidence            346899999 9999999999998765 5888876533221 1100  0000001100   0000 0112 4455789999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +.|+|..      ...+..... +.|+.+|+.+
T Consensus        87 f~atp~~------~s~~~a~~~-~aG~~VId~s  112 (359)
T 1xyg_A           87 FCCLPHG------TTQEIIKEL-PTALKIVDLS  112 (359)
T ss_dssp             EECCCTT------THHHHHHTS-CTTCEEEECS
T ss_pred             EEcCCch------hHHHHHHHH-hCCCEEEECC
Confidence            9998832      235555524 7788888876

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=96.33  E-value=0.0064  Score=54.19  Aligned_cols=65  Identities=8%  Similarity=0.169  Sum_probs=46.1

Q ss_pred             CEEEEEecCchHH-HHHHHhccCCCEE-EEEcCCCCCccccccccchhhhcccccccccccc---CCCCCHHHHHh--hC
Q 024297          154 KTVFILGFGNIGV-ELAKRLRPFGVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK---GCHEDIFEFAS--KA  226 (269)
Q Consensus       154 ~~vgIiG~G~iG~-~~a~~l~~~G~~V-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ell~--~a  226 (269)
                      .+|||||+|.+|. ..++.++..|++| -++|++..+...                 ....+   ..+.++++++.  +.
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~-----------------~a~~~~~~~~~~~~~~ll~~~~~   67 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAK-----------------FTSLFPSVPFAASAEQLITDASI   67 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHH-----------------HHHHSTTCCBCSCHHHHHTCTTC
T ss_pred             cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHH-----------------HHHhcCCCcccCCHHHHhhCCCC
Confidence            4899999999996 6777776568996 577777654211                 11111   13578999997  68


Q ss_pred             CEEEEecCC
Q 024297          227 DVVVCCLSL  235 (269)
Q Consensus       227 Dvvv~~lp~  235 (269)
                      |+|++++|.
T Consensus        68 D~V~i~tp~   76 (336)
T 2p2s_A           68 DLIACAVIP   76 (336)
T ss_dssp             CEEEECSCG
T ss_pred             CEEEEeCCh
Confidence            999999884

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=96.32  E-value=0.0069  Score=53.73  Aligned_cols=67  Identities=13%  Similarity=0.149  Sum_probs=45.2

Q ss_pred             CEEEEEec-CchHHHHHHHhccCCCEEE-EEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH--------
Q 024297          154 KTVFILGF-GNIGVELAKRLRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA--------  223 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell--------  223 (269)
                      .++||||+ |.||+..++.++..+.+|. ++|++.... ...              ........+.++++++        
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~--------------~~~~~~~~~~~~~~ll~~~~~l~~   68 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVG-LVD--------------SFFPEAEFFTEPEAFEAYLEDLRD   68 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGG--------------GTCTTCEEESCHHHHHHHHHHHHH
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHH--------------hhCCCCceeCCHHHHHHHhhhhcc
Confidence            58999999 6899999999998898854 556654431 100              0000011246778877        


Q ss_pred             --hhCCEEEEecCC
Q 024297          224 --SKADVVVCCLSL  235 (269)
Q Consensus       224 --~~aDvvv~~lp~  235 (269)
                        ++.|+|+++.|.
T Consensus        69 ~~~~vD~V~I~tP~   82 (312)
T 3o9z_A           69 RGEGVDYLSIASPN   82 (312)
T ss_dssp             TTCCCSEEEECSCG
T ss_pred             cCCCCcEEEECCCc
Confidence              578999999884

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.31  E-value=0.0043  Score=52.03  Aligned_cols=77  Identities=26%  Similarity=0.368  Sum_probs=52.3

Q ss_pred             ccCCEEEEEe-cCchHHHHHHHhccCCC--EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          151 LLGKTVFILG-FGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       151 l~g~~vgIiG-~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      +.+++|.|.| .|.||+++++.|...|+  +|++++|+..+.......        + +.....+....+++.++++..|
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~--------~-~~~~~~D~~d~~~~~~~~~~~d   86 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYK--------N-VNQEVVDFEKLDDYASAFQGHD   86 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGG--------G-CEEEECCGGGGGGGGGGGSSCS
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccC--------C-ceEEecCcCCHHHHHHHhcCCC
Confidence            5678999999 69999999999999999  999999876542110000        0 0000011112356777788999


Q ss_pred             EEEEecCCC
Q 024297          228 VVVCCLSLN  236 (269)
Q Consensus       228 vvv~~lp~t  236 (269)
                      +|+.+....
T Consensus        87 ~vi~~ag~~   95 (242)
T 2bka_A           87 VGFCCLGTT   95 (242)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCcc
Confidence            999987643

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=96.30  E-value=0.0039  Score=58.92  Aligned_cols=79  Identities=13%  Similarity=0.047  Sum_probs=46.7

Q ss_pred             CCEEEEEecCch--HHHHHHHhc---cC-CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          153 GKTVFILGFGNI--GVELAKRLR---PF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       153 g~~vgIiG~G~i--G~~~a~~l~---~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      ..+|+|||.|++  |.++|..+.   ++ |.+|..+|++..+....... .....+...   .........++.+.++.|
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~-~~~~l~~~~---~~~~I~~ttD~~eal~dA   78 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTI-AKKYVEEVG---ADLKFEKTMNLDDVIIDA   78 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHH-HHHHHHHTT---CCCEEEEESCHHHHHTTC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHH-HHHHhccCC---CCcEEEEECCHHHHhCCC
Confidence            468999999997  566566553   34 88999999876431111000 000000000   000011235788899999


Q ss_pred             CEEEEecCC
Q 024297          227 DVVVCCLSL  235 (269)
Q Consensus       227 Dvvv~~lp~  235 (269)
                      |+|++++|.
T Consensus        79 D~VIiaagv   87 (480)
T 1obb_A           79 DFVINTAMV   87 (480)
T ss_dssp             SEEEECCCT
T ss_pred             CEEEECCCc
Confidence            999999973

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=96.30  E-value=0.0027  Score=57.51  Aligned_cols=99  Identities=16%  Similarity=0.036  Sum_probs=53.7

Q ss_pred             CEEEEEe-cCchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhccc---cc-cccccccCCCCCHHHHHh-hC
Q 024297          154 KTVFILG-FGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNG---II-DDLVDEKGCHEDIFEFAS-KA  226 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~l~ell~-~a  226 (269)
                      .+|+|+| +|.+|+.+++.|... +++|.++.++.........    -.++..   .+ ....+-.....+.+++++ .+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYK----DACYWFQDRDIPENIKDMVVIPTDPKHEEFEDV   84 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHH----HHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTC
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHH----HhcccccccccccCceeeEEEeCCHHHHhcCCC
Confidence            4899999 999999999999876 4688777543221111100    000000   00 000000000013344456 89


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|+.++|..      ...+.....++.|+.+|+.+
T Consensus        85 DvV~~atp~~------~~~~~a~~~~~aG~~VId~s  114 (354)
T 1ys4_A           85 DIVFSALPSD------LAKKFEPEFAKEGKLIFSNA  114 (354)
T ss_dssp             CEEEECCCHH------HHHHHHHHHHHTTCEEEECC
T ss_pred             CEEEECCCch------HHHHHHHHHHHCCCEEEECC
Confidence            9999998832      22333332456788888775

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=96.29  E-value=0.0033  Score=54.05  Aligned_cols=72  Identities=14%  Similarity=0.117  Sum_probs=51.2

Q ss_pred             cCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       152 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      .+|+|.|.| .|.||+++++.|...|++|++.+|+..+....            .+.....+....+++.+++++.|+|+
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~------------~~~~~~~Dl~d~~~~~~~~~~~D~vi   69 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGP------------NEECVQCDLADANAVNAMVAGCDGIV   69 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCT------------TEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCC------------CCEEEEcCCCCHHHHHHHHcCCCEEE
Confidence            467899999 79999999999999999999999986542100            00011112223456788899999999


Q ss_pred             EecCC
Q 024297          231 CCLSL  235 (269)
Q Consensus       231 ~~lp~  235 (269)
                      .+.-.
T Consensus        70 ~~Ag~   74 (267)
T 3rft_A           70 HLGGI   74 (267)
T ss_dssp             ECCSC
T ss_pred             ECCCC
Confidence            87643

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=96.27  E-value=0.0021  Score=63.95  Aligned_cols=107  Identities=14%  Similarity=0.120  Sum_probs=66.2

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhh----hccccccc---cccccCCCCCHHHHHhhC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALA----VKNGIIDD---LVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~l~ell~~a  226 (269)
                      ++|||||.|.||..+|..+...|++|+.+|++...-..... .....    ...+....   .........++ +.+++|
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~a  394 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKK-IITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV  394 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHH-HHHHHHHHHHHHHHTTTCCCCCCCEEEESCG-GGGGSC
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHH-HHHHHHHHHHHhccccchhhhhhhhcccCcH-HHHhhC
Confidence            79999999999999999999999999999987543111000 00000    00000000   00000011233 347899


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |+||=++|-+.+.+.-+-++.=+ .++++++|-...-
T Consensus       395 DlVIEAV~E~l~iK~~vf~~le~-~~~~~aIlASNTS  430 (742)
T 3zwc_A          395 DLVVEAVFEDMNLKKKVFAELSA-LCKPGAFLCTNTS  430 (742)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHH-HSCTTCEEEECCS
T ss_pred             CEEEEeccccHHHHHHHHHHHhh-cCCCCceEEecCC
Confidence            99999999777766544443444 7999998876543

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.27  E-value=0.0024  Score=57.40  Aligned_cols=104  Identities=16%  Similarity=0.094  Sum_probs=57.7

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      -.+++|+|||.|.||..+|..+...|.  +|..+|++..+..-..   .++  .+.  ........-..+..+.++.||+
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a---~DL--~~~--~~~~~~~~i~~~~~~a~~~aDi   79 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDA---IDL--EDA--LPFTSPKKIYSAEYSDAKDADL   79 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHH---HHH--HTT--GGGSCCCEEEECCGGGGTTCSE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHH---hhH--hhh--hhhcCCcEEEECcHHHhcCCCE
Confidence            356799999999999999999987776  9999998643211000   000  000  0000000001223466899999


Q ss_pred             EEEecCCCc---ccc-CcC--CH-------HHHhhhCCCCcEEEEcc
Q 024297          229 VVCCLSLNK---QTV-KLC--SS-------SLSSKSMFFATYVVFMF  262 (269)
Q Consensus       229 vv~~lp~t~---~t~-~li--~~-------~~l~~~mk~ga~lIN~~  262 (269)
                      |+++.....   .|| .++  |.       +.+. ...|++++++++
T Consensus        80 Vvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~-~~~p~a~ilvvt  125 (326)
T 3vku_A           80 VVITAGAPQKPGETRLDLVNKNLKILKSIVDPIV-DSGFNGIFLVAA  125 (326)
T ss_dssp             EEECCCCC----------------CHHHHHHHHH-TTTCCSEEEECS
T ss_pred             EEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHH-hcCCceEEEEcc
Confidence            999865321   122 223  11       1233 345788998876

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.26  E-value=0.0019  Score=57.98  Aligned_cols=99  Identities=17%  Similarity=0.155  Sum_probs=58.4

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCCccc---cccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQ---VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      .++|+|||.|.||..+|..|...|.  +|..+|++..+...   +..+..++. +.+.  ..      ..+..+.+++||
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~-~~~v--~i------~~~~~~a~~~aD   75 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFA-PQPV--KT------SYGTYEDCKDAD   75 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGS-SSCC--EE------EEECGGGGTTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccc-cCCe--EE------EeCcHHHhCCCC
Confidence            5689999999999999999987776  99999986433110   010000000 0000  00      011235689999


Q ss_pred             EEEEecCCCccccCc-----C--CH-------HHHhhhCCCCcEEEEcc
Q 024297          228 VVVCCLSLNKQTVKL-----C--SS-------SLSSKSMFFATYVVFMF  262 (269)
Q Consensus       228 vvv~~lp~t~~t~~l-----i--~~-------~~l~~~mk~ga~lIN~~  262 (269)
                      +|+++.+. |+..+.     +  |.       +.+. ...|++++++++
T Consensus        76 vVvi~ag~-p~kpG~~R~dL~~~N~~Iv~~i~~~I~-~~~p~a~vlvvt  122 (326)
T 3pqe_A           76 IVCICAGA-NQKPGETRLELVEKNLKIFKGIVSEVM-ASGFDGIFLVAT  122 (326)
T ss_dssp             EEEECCSC-CCCTTCCHHHHHHHHHHHHHHHHHHHH-HTTCCSEEEECS
T ss_pred             EEEEeccc-CCCCCccHHHHHHHHHHHHHHHHHHHH-HhcCCeEEEEcC
Confidence            99999863 332222     1  11       1233 346788999886

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=96.26  E-value=0.0019  Score=62.56  Aligned_cols=44  Identities=25%  Similarity=0.376  Sum_probs=37.2

Q ss_pred             CCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCC
Q 024297          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (269)
Q Consensus       143 w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~  186 (269)
                      |.......+++++|.|||.|.+|..+|+.|...|. +++.+|...
T Consensus       316 lp~~g~ekL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          316 LPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             CTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             cchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            44433457999999999999999999999999998 799999743

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=96.24  E-value=0.014  Score=49.85  Aligned_cols=37  Identities=24%  Similarity=0.451  Sum_probs=33.1

Q ss_pred             cccCCEEEEEec-Cc--hHHHHHHHhccCCCEEEEEcCCC
Q 024297          150 TLLGKTVFILGF-GN--IGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~--iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      ++.||++.|.|. |.  ||+++|+.|...|++|++.+|+.
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   43 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE   43 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence            578999999997 44  99999999999999999998864

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=96.24  E-value=0.027  Score=52.15  Aligned_cols=101  Identities=22%  Similarity=0.172  Sum_probs=61.3

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhcc-CCCEEEEEcCCCCCccccccccchhhhccccccccc----------ccc--C
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRP-FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV----------DEK--G  214 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~--~  214 (269)
                      |.++.|++|.|.|+|++|+.+++.|.. .|++|+++..+...          +..++|+..+..          ..+  .
T Consensus       204 g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~----------i~dp~Gld~~~l~~~~~~~g~l~~y~~a  273 (415)
T 2tmg_A          204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGG----------IYNPEGFDVEELIRYKKEHGTVVTYPKG  273 (415)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCE----------EECTTCCCHHHHHHHHHHSSCSTTCSSS
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCe----------EECCCCCCHHHHHHHHHhhCCcccCCCc
Confidence            467999999999999999999999998 99999855432110          001112100000          000  0


Q ss_pred             CCCCHHHHHh-hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          215 CHEDIFEFAS-KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       215 ~~~~l~ell~-~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      ...+-++++. .||+++-|..     .+.++.+... .++ ..+++--+=++
T Consensus       274 ~~~~~~eil~~~~DIliP~A~-----~n~i~~~~a~-~l~-ak~V~EgAN~p  318 (415)
T 2tmg_A          274 ERITNEELLELDVDILVPAAL-----EGAIHAGNAE-RIK-AKAVVEGANGP  318 (415)
T ss_dssp             EEECHHHHTTCSCSEEEECSS-----TTSBCHHHHT-TCC-CSEEECCSSSC
T ss_pred             eEcCchhhhcCCCcEEEecCC-----cCccCcccHH-HcC-CeEEEeCCCcc
Confidence            1123456655 8999998863     4667887777 663 34444444433

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=96.24  E-value=0.0028  Score=57.19  Aligned_cols=71  Identities=13%  Similarity=0.180  Sum_probs=45.4

Q ss_pred             CEEEEEecCchHHHHHHHhccC-CCEEE-EEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh--hCCEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADVV  229 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDvv  229 (269)
                      .+|||||+|.||+..++.+... ++++. +++++..+.....       -..|.    ......+.++++++.  +.|+|
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a-------~~~~~----~~~~~~~~~~~~ll~~~~~D~V   75 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFA-------TANNY----PESTKIHGSYESLLEDPEIDAL   75 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHH-------HHTTC----CTTCEEESSHHHHHHCTTCCEE
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHH-------HHhCC----CCCCeeeCCHHHHhcCCCCCEE
Confidence            4899999999999999988865 67764 5676543311000       00000    000012468999997  59999


Q ss_pred             EEecCC
Q 024297          230 VCCLSL  235 (269)
Q Consensus       230 v~~lp~  235 (269)
                      ++++|.
T Consensus        76 ~i~tp~   81 (362)
T 1ydw_A           76 YVPLPT   81 (362)
T ss_dssp             EECCCG
T ss_pred             EEcCCh
Confidence            999883

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.22  E-value=0.0019  Score=57.59  Aligned_cols=96  Identities=19%  Similarity=0.201  Sum_probs=62.2

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----  224 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----  224 (269)
                      -.|++|.|+|. |.||+.+++.++..|++|++++++..+.......       -| .+...+ . ...++.+.+.     
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~-------~g-~~~~~~-~-~~~~~~~~~~~~~~~  217 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEE-------LG-FDGAID-Y-KNEDLAAGLKRECPK  217 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT-------TC-CSEEEE-T-TTSCHHHHHHHHCTT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------cC-CCEEEE-C-CCHHHHHHHHHhcCC
Confidence            46889999998 9999999999999999999999865432111000       00 011111 1 1134444333     


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ..|+|+.+... +    . -...+. .++++..+|.+|-
T Consensus       218 ~~d~vi~~~g~-~----~-~~~~~~-~l~~~G~iv~~G~  249 (336)
T 4b7c_A          218 GIDVFFDNVGG-E----I-LDTVLT-RIAFKARIVLCGA  249 (336)
T ss_dssp             CEEEEEESSCH-H----H-HHHHHT-TEEEEEEEEECCC
T ss_pred             CceEEEECCCc-c----h-HHHHHH-HHhhCCEEEEEee
Confidence            38999888752 1    1 244677 8999999998874

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=96.22  E-value=0.0028  Score=57.32  Aligned_cols=65  Identities=14%  Similarity=0.091  Sum_probs=44.6

Q ss_pred             CEEEEEecCchHHH-HHHHhccC-CCEEE-EEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh--CCE
Q 024297          154 KTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADV  228 (269)
Q Consensus       154 ~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDv  228 (269)
                      .+|||||+|.||+. .+..++.. +++|. ++|++..+. .                ........+.++++++.+  .|+
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~-~----------------~~~~~~~~~~~~~~ll~~~~vD~   68 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELS-K----------------ERYPQASIVRSFKELTEDPEIDL   68 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGG-G----------------TTCTTSEEESCSHHHHTCTTCCE
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHH-H----------------HhCCCCceECCHHHHhcCCCCCE
Confidence            48999999999997 67777665 78876 556654331 0                000000124688999986  899


Q ss_pred             EEEecCC
Q 024297          229 VVCCLSL  235 (269)
Q Consensus       229 vv~~lp~  235 (269)
                      |+++.|.
T Consensus        69 V~i~tp~   75 (362)
T 3fhl_A           69 IVVNTPD   75 (362)
T ss_dssp             EEECSCG
T ss_pred             EEEeCCh
Confidence            9999884

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.21  E-value=0.0022  Score=57.42  Aligned_cols=64  Identities=16%  Similarity=0.181  Sum_probs=43.7

Q ss_pred             EEEEEecCchHHH-HHHHhccC-CCEEEE-EcCCCCCccccccccchhhhccccccccccccC---CCCCHHHHHh--hC
Q 024297          155 TVFILGFGNIGVE-LAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--KA  226 (269)
Q Consensus       155 ~vgIiG~G~iG~~-~a~~l~~~-G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~a  226 (269)
                      ++||||+|.||+. .+..++.. +++|.+ +|++..+..                 ....+++   .+.+++++|+  +.
T Consensus        25 rigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~-----------------~~a~~~g~~~~y~d~~ell~~~~i   87 (350)
T 4had_A           25 RFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAR-----------------EMADRFSVPHAFGSYEEMLASDVI   87 (350)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHH-----------------HHHHHHTCSEEESSHHHHHHCSSC
T ss_pred             EEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHH-----------------HHHHHcCCCeeeCCHHHHhcCCCC
Confidence            8999999999986 46666654 788775 566543311                 1112222   2578999996  47


Q ss_pred             CEEEEecCC
Q 024297          227 DVVVCCLSL  235 (269)
Q Consensus       227 Dvvv~~lp~  235 (269)
                      |+|+++.|.
T Consensus        88 DaV~I~tP~   96 (350)
T 4had_A           88 DAVYIPLPT   96 (350)
T ss_dssp             SEEEECSCG
T ss_pred             CEEEEeCCC
Confidence            999999883

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.21  E-value=0.0024  Score=56.86  Aligned_cols=95  Identities=17%  Similarity=0.156  Sum_probs=62.0

Q ss_pred             ccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----
Q 024297          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----  224 (269)
Q Consensus       151 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----  224 (269)
                      -.|++|.|+| .|.||+.+++.++.+|++|++++++..+.....        .-| .+...+ . ...++.+.+.     
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~--------~~g-a~~~~~-~-~~~~~~~~~~~~~~~  215 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAK--------EYG-AEYLIN-A-SKEDILRQVLKFTNG  215 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH--------HTT-CSEEEE-T-TTSCHHHHHHHHTTT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--------HcC-CcEEEe-C-CCchHHHHHHHHhCC
Confidence            3688999999 899999999999999999999998654321100        001 011111 1 1133333322     


Q ss_pred             -hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 -KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 -~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                       ..|+|+.+...     .. -...+. .++++..++.+|-
T Consensus       216 ~g~D~vid~~g~-----~~-~~~~~~-~l~~~G~iv~~G~  248 (334)
T 3qwb_A          216 KGVDASFDSVGK-----DT-FEISLA-ALKRKGVFVSFGN  248 (334)
T ss_dssp             SCEEEEEECCGG-----GG-HHHHHH-HEEEEEEEEECCC
T ss_pred             CCceEEEECCCh-----HH-HHHHHH-HhccCCEEEEEcC
Confidence             47999988762     11 244677 8999999999874

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=96.20  E-value=0.0026  Score=57.42  Aligned_cols=66  Identities=15%  Similarity=0.130  Sum_probs=45.0

Q ss_pred             CEEEEEecCchHHH-HHHHhccC-CCEEE-EEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh--hCCE
Q 024297          154 KTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV  228 (269)
Q Consensus       154 ~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDv  228 (269)
                      .+|||||+|.||+. .+..++.. +++|. ++|++..+.   .              ........+.++++++.  +.|+
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~---~--------------~~~~~~~~~~~~~~ll~~~~vD~   68 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEV---K--------------RDFPDAEVVHELEEITNDPAIEL   68 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHH---H--------------HHCTTSEEESSTHHHHTCTTCCE
T ss_pred             ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHH---H--------------hhCCCCceECCHHHHhcCCCCCE
Confidence            48999999999997 78878766 78876 455543220   0              00000113478899998  7899


Q ss_pred             EEEecCCC
Q 024297          229 VVCCLSLN  236 (269)
Q Consensus       229 vv~~lp~t  236 (269)
                      |+++.|..
T Consensus        69 V~i~tp~~   76 (358)
T 3gdo_A           69 VIVTTPSG   76 (358)
T ss_dssp             EEECSCTT
T ss_pred             EEEcCCcH
Confidence            99999843

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.20  E-value=0.002  Score=58.09  Aligned_cols=95  Identities=18%  Similarity=0.183  Sum_probs=62.5

Q ss_pred             ccCCEEEEE-ecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----
Q 024297          151 LLGKTVFIL-GFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----  224 (269)
Q Consensus       151 l~g~~vgIi-G~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----  224 (269)
                      -.|++|.|+ |.|.||+.+++.++..|++|++++++..+......        -| .+...+ . ...++.+.+.     
T Consensus       166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~--------lG-a~~~~~-~-~~~~~~~~~~~~~~~  234 (353)
T 4dup_A          166 TEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACER--------LG-AKRGIN-Y-RSEDFAAVIKAETGQ  234 (353)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH--------HT-CSEEEE-T-TTSCHHHHHHHHHSS
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh--------cC-CCEEEe-C-CchHHHHHHHHHhCC
Confidence            367899999 68999999999999999999999986544211100        00 001111 1 1234444443     


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ..|+++.+... +    . -...+. .++++..++.++-
T Consensus       235 g~Dvvid~~g~-~----~-~~~~~~-~l~~~G~iv~~g~  266 (353)
T 4dup_A          235 GVDIILDMIGA-A----Y-FERNIA-SLAKDGCLSIIAF  266 (353)
T ss_dssp             CEEEEEESCCG-G----G-HHHHHH-TEEEEEEEEECCC
T ss_pred             CceEEEECCCH-H----H-HHHHHH-HhccCCEEEEEEe
Confidence            48999998762 1    2 244677 8999999999873

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.20  E-value=0.0042  Score=53.95  Aligned_cols=83  Identities=18%  Similarity=0.191  Sum_probs=50.7

Q ss_pred             CCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          153 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       153 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      .++|.|.|. |.+|+.+++.|...|.+|++.+|+......+.....-..+...++.-...+....+++.++++.+|+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            468999996 9999999999999999999999875431000000000000000111111112233568888999999998


Q ss_pred             ecCC
Q 024297          232 CLSL  235 (269)
Q Consensus       232 ~lp~  235 (269)
                      +.+.
T Consensus        84 ~a~~   87 (308)
T 1qyc_A           84 TVGS   87 (308)
T ss_dssp             CCCG
T ss_pred             CCcc
Confidence            8764

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.19  E-value=0.0024  Score=57.39  Aligned_cols=96  Identities=19%  Similarity=0.158  Sum_probs=61.2

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH----h-
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA----S-  224 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell----~-  224 (269)
                      -.|.+|.|+|.|.+|..+++.++.+|+ +|++++++..+......        -| ++..++.  ...++.+.+    . 
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~--------lG-a~~vi~~--~~~~~~~~v~~~t~g  233 (352)
T 3fpc_A          165 KLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE--------YG-ATDIINY--KNGDIVEQILKATDG  233 (352)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH--------HT-CCEEECG--GGSCHHHHHHHHTTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH--------hC-CceEEcC--CCcCHHHHHHHHcCC
Confidence            357899999999999999999999999 79999876543111100        00 0011110  112333322    2 


Q ss_pred             -hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 -KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 -~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                       ..|+|+.+....+    . -...++ .++++..++.++-
T Consensus       234 ~g~D~v~d~~g~~~----~-~~~~~~-~l~~~G~~v~~G~  267 (352)
T 3fpc_A          234 KGVDKVVIAGGDVH----T-FAQAVK-MIKPGSDIGNVNY  267 (352)
T ss_dssp             CCEEEEEECSSCTT----H-HHHHHH-HEEEEEEEEECCC
T ss_pred             CCCCEEEECCCChH----H-HHHHHH-HHhcCCEEEEecc
Confidence             3899998875321    1 244677 8999999998873

>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*

Probab=96.18  E-value=0.071  Score=48.37  Aligned_cols=147  Identities=12%  Similarity=-0.004  Sum_probs=89.5

Q ss_pred             hHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec-------CchHH
Q 024297           94 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF-------GNIGV  166 (269)
Q Consensus        94 ~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~-------G~iG~  166 (269)
                      .+....|+|.|. |.   +..++  .+|+=++.+.+++               ...++.|++++++|.       .++.+
T Consensus       152 ~a~~~~vPVIN~-g~---~~HPt--QaL~Dl~Ti~e~~---------------G~~dl~g~kv~~~~~~~gd~~~~~Va~  210 (359)
T 3kzn_A          152 FAKYSPVPVINM-ET---ITHPC--QELAHALALQEHF---------------GTPDLRGKKYVLTWTYHPKPLNTAVAN  210 (359)
T ss_dssp             HHHHCSSCEEES-SS---SCCHH--HHHHHHHHHHHHH---------------TSSCCTTCEEEEEECCCSSCCCSHHHH
T ss_pred             HHHhCCCcccCc-cc---ccCch--HHHHHHHHHHHHc---------------CCccccCCeEEEEEeecCCccccchhh
Confidence            355578999996 43   44666  6777777776654               114689999999985       36899


Q ss_pred             HHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCc------c--
Q 024297          167 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNK------Q--  238 (269)
Q Consensus       167 ~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~------~--  238 (269)
                      .++..+..+|++|.++.+.+.-.....  .......+  +...........+++++++++|||....=-..      +  
T Consensus       211 S~~~~~~~~g~~v~~~~P~~~~~~~~~--~~~~~~~~--~~~~g~~i~~~~d~~eav~~aDvvyt~r~q~~r~~~~~~~~  286 (359)
T 3kzn_A          211 SALTIATRMGMDVTLLCPTPDYILDER--YMDWAAQN--VAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFFGNWEPE  286 (359)
T ss_dssp             HHHHHHHHTTCEEEEECSSGGGCCCHH--HHHHHHHH--HHHHSCEEEEECCHHHHHTTCSEEEEECCCCGGGTTCCTTH
T ss_pred             hhHHHHHhccccEEEEecccccCCCHH--HHHHHHHH--HHhhCCCcccccCHHHHhcCCeEEEEEEEEEeecccchhhh
Confidence            999999999999999987421100000  00000000  00000001124689999999999988643111      0  


Q ss_pred             -------ccCcCCHHHHhhhCCCCcEEEEcc---CCCCc
Q 024297          239 -------TVKLCSSSLSSKSMFFATYVVFMF---QGHGV  267 (269)
Q Consensus       239 -------t~~li~~~~l~~~mk~ga~lIN~~---RG~~v  267 (269)
                             ....++++.++  ++++++|.-+.   ||.=|
T Consensus       287 ~~~~~~~~~y~v~~~l~~--~~~~ai~MHplP~~Rg~EI  323 (359)
T 3kzn_A          287 KPIRDQYQHFIVDERKMA--LTNNGVFSHCLPLRRNVKA  323 (359)
T ss_dssp             HHHHGGGGGGSBCHHHHH--TSSSCEEECCSCCCBTTTB
T ss_pred             HHHHHHHhccChHHHHhc--CCCCCEEECCCCCCCCCCc
Confidence                   11256776665  56789988776   77433

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=96.18  E-value=0.0014  Score=58.31  Aligned_cols=70  Identities=14%  Similarity=0.283  Sum_probs=44.5

Q ss_pred             CEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      ++|+|||.|.+|..+|..+...|.  +|..+|.+........    ++..-..      .......++ +.++.||+|+.
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~----dl~~~~~------~~i~~t~d~-~~l~~aD~Vi~   83 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATM----DLEIFNL------PNVEISKDL-SASAHSKVVIF   83 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHH----HHHHHTC------TTEEEESCG-GGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHH----HHhhhcC------CCeEEeCCH-HHHCCCCEEEE
Confidence            799999999999999998887777  9999998764211111    1100000      000011455 66899999999


Q ss_pred             ecC
Q 024297          232 CLS  234 (269)
Q Consensus       232 ~lp  234 (269)
                      +..
T Consensus        84 aag   86 (303)
T 2i6t_A           84 TVN   86 (303)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            973

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.17  E-value=0.002  Score=58.33  Aligned_cols=95  Identities=9%  Similarity=0.069  Sum_probs=61.2

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----h
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  225 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  225 (269)
                      .|++|.|+|.|.+|+.+++.++.+|+ +|++++++..+.....        .-| .+..++ . ...++.+.+.     .
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~--------~lG-a~~vi~-~-~~~~~~~~~~~~~~gg  258 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK--------QLG-ATHVIN-S-KTQDPVAAIKEITDGG  258 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH--------HHT-CSEEEE-T-TTSCHHHHHHHHTTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH--------HcC-CCEEec-C-CccCHHHHHHHhcCCC
Confidence            57899999999999999999999999 7999987654421110        001 011111 0 1134433333     3


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      .|+|+.++... +   . -...++ .++++..++.++-
T Consensus       259 ~D~vid~~g~~-~---~-~~~~~~-~l~~~G~iv~~G~  290 (371)
T 1f8f_A          259 VNFALESTGSP-E---I-LKQGVD-ALGILGKIAVVGA  290 (371)
T ss_dssp             EEEEEECSCCH-H---H-HHHHHH-TEEEEEEEEECCC
T ss_pred             CcEEEECCCCH-H---H-HHHHHH-HHhcCCEEEEeCC
Confidence            79999887621 1   1 134677 8999999998874

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=96.17  E-value=0.0087  Score=53.20  Aligned_cols=67  Identities=15%  Similarity=0.153  Sum_probs=44.8

Q ss_pred             CEEEEEec-CchHHHHHHHhccCCCEEE-EEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH--------
Q 024297          154 KTVFILGF-GNIGVELAKRLRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA--------  223 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell--------  223 (269)
                      .++||||+ |.||+..++.++..|.++. ++|++.... . ..             ........+.++++++        
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~-~~-------------~~~~~~~~~~~~~~ll~~~~~l~~   68 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVG-I-ID-------------SISPQSEFFTEFEFFLDHASNLKR   68 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-G-GG-------------GTCTTCEEESSHHHHHHHHHHHTT
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHH-H-HH-------------hhCCCCcEECCHHHHHHhhhhhhh
Confidence            58999999 7899999999998898855 555554331 0 00             0000011246778877        


Q ss_pred             ---hhCCEEEEecCC
Q 024297          224 ---SKADVVVCCLSL  235 (269)
Q Consensus       224 ---~~aDvvv~~lp~  235 (269)
                         ++.|+|+++.|.
T Consensus        69 ~~~~~vD~V~I~tP~   83 (318)
T 3oa2_A           69 DSATALDYVSICSPN   83 (318)
T ss_dssp             STTTSCCEEEECSCG
T ss_pred             ccCCCCcEEEECCCc
Confidence               578999999884

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=96.17  E-value=0.0089  Score=56.40  Aligned_cols=34  Identities=35%  Similarity=0.599  Sum_probs=31.8

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEc
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK  183 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~  183 (269)
                      ++.|+||.|-|+|++|+.+|+.|..+|++|+++.
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavs  274 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVG  274 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            5899999999999999999999999999998754

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.16  E-value=0.0025  Score=56.95  Aligned_cols=95  Identities=15%  Similarity=0.149  Sum_probs=61.8

Q ss_pred             ccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----
Q 024297          151 LLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----  224 (269)
Q Consensus       151 l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----  224 (269)
                      -.|++|.|+|.| .||+.+++.++.+|++|++++++..+......        -| .+..++ . ...++.+.+.     
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~--------lg-a~~~~~-~-~~~~~~~~~~~~~~~  211 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR--------LG-AAYVID-T-STAPLYETVMELTNG  211 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH--------HT-CSEEEE-T-TTSCHHHHHHHHTTT
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh--------CC-CcEEEe-C-CcccHHHHHHHHhCC
Confidence            367899999998 89999999999999999999987655211110        00 011111 1 1133333322     


Q ss_pred             -hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 -KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 -~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                       ..|+|+.++... .+     .+.+. .++++..++.+|-
T Consensus       212 ~g~Dvvid~~g~~-~~-----~~~~~-~l~~~G~iv~~G~  244 (340)
T 3gms_A          212 IGADAAIDSIGGP-DG-----NELAF-SLRPNGHFLTIGL  244 (340)
T ss_dssp             SCEEEEEESSCHH-HH-----HHHHH-TEEEEEEEEECCC
T ss_pred             CCCcEEEECCCCh-hH-----HHHHH-HhcCCCEEEEEee
Confidence             479999887522 11     33556 8999999999874

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.16  E-value=0.007  Score=52.89  Aligned_cols=39  Identities=28%  Similarity=0.295  Sum_probs=34.9

Q ss_pred             ccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       149 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      ..+.||++.|.|. |.||+++|+.|...|++|++.+++..
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~   82 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEE   82 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            4689999999995 78999999999999999999998754

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.15  E-value=0.0015  Score=60.26  Aligned_cols=79  Identities=16%  Similarity=0.260  Sum_probs=49.8

Q ss_pred             CEEEEEecCchHHHHHHHhccCC---CEEEEEcCCCCCccccccccchhhhcc-ccccccccccCCCCCHHHHHhh--CC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFG---VKIIATKRSWASHSQVSCQSSALAVKN-GIIDDLVDEKGCHEDIFEFASK--AD  227 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ell~~--aD  227 (269)
                      ++|+|+|.|.||+.+++.|...|   .+|.+++|+..+.......   +.-.. ..+..........+++++++++  +|
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~---l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~D   78 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQS---IKAKGYGEIDITTVDADSIEELVALINEVKPQ   78 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHH---HHHTTCCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHH---hhhhcCCceEEEEecCCCHHHHHHHHHhhCCC
Confidence            58999999999999999999887   4999999876542111100   00000 0000001111123568888888  89


Q ss_pred             EEEEecCC
Q 024297          228 VVVCCLSL  235 (269)
Q Consensus       228 vvv~~lp~  235 (269)
                      +|+++.|.
T Consensus        79 vVin~ag~   86 (405)
T 4ina_A           79 IVLNIALP   86 (405)
T ss_dssp             EEEECSCG
T ss_pred             EEEECCCc
Confidence            99999873

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.15  E-value=0.0026  Score=56.55  Aligned_cols=96  Identities=16%  Similarity=0.083  Sum_probs=62.5

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----  224 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----  224 (269)
                      -.|++|.|+|. |.||+.+++.++..|++|++++++..+.... ..       -| .....+ .....++.+.+.     
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~~-------~g-~~~~~d-~~~~~~~~~~~~~~~~~  213 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQ-------IG-FDAAFN-YKTVNSLEEALKKASPD  213 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HH-------TT-CSEEEE-TTSCSCHHHHHHHHCTT
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-Hh-------cC-CcEEEe-cCCHHHHHHHHHHHhCC
Confidence            36889999998 9999999999999999999999764331110 00       01 001111 111144554443     


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ..|+|+.+... +    . -...++ .++++..++.+|-
T Consensus       214 ~~d~vi~~~g~-~----~-~~~~~~-~l~~~G~~v~~g~  245 (333)
T 1v3u_A          214 GYDCYFDNVGG-E----F-LNTVLS-QMKDFGKIAICGA  245 (333)
T ss_dssp             CEEEEEESSCH-H----H-HHHHHT-TEEEEEEEEECCC
T ss_pred             CCeEEEECCCh-H----H-HHHHHH-HHhcCCEEEEEec
Confidence            37999988752 1    1 245677 8999999998873

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.14  E-value=0.008  Score=53.77  Aligned_cols=79  Identities=19%  Similarity=0.206  Sum_probs=51.2

Q ss_pred             ccccCCEEEEEe-cCchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhh
Q 024297          149 ETLLGKTVFILG-FGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASK  225 (269)
Q Consensus       149 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~  225 (269)
                      ..+.+++|.|.| .|-||+.+++.|... |++|++++|+..+......        ...+.-...+.. ....+.++++.
T Consensus        20 ~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~--------~~~v~~~~~Dl~~d~~~~~~~~~~   91 (372)
T 3slg_A           20 GSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVK--------HERMHFFEGDITINKEWVEYHVKK   91 (372)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGG--------STTEEEEECCTTTCHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhcc--------CCCeEEEeCccCCCHHHHHHHhcc
Confidence            457789999999 699999999999987 9999999997654211100        000011111111 23457788899


Q ss_pred             CCEEEEecCC
Q 024297          226 ADVVVCCLSL  235 (269)
Q Consensus       226 aDvvv~~lp~  235 (269)
                      +|+|+.+...
T Consensus        92 ~d~Vih~A~~  101 (372)
T 3slg_A           92 CDVILPLVAI  101 (372)
T ss_dssp             CSEEEECBCC
T ss_pred             CCEEEEcCcc
Confidence            9999876543

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=96.14  E-value=0.0026  Score=59.15  Aligned_cols=72  Identities=17%  Similarity=0.145  Sum_probs=45.3

Q ss_pred             CEEEEEecCchHH-HHHHHhccC-CCEEE-EEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh--hCCE
Q 024297          154 KTVFILGFGNIGV-ELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV  228 (269)
Q Consensus       154 ~~vgIiG~G~iG~-~~a~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDv  228 (269)
                      .+|||||+|.||+ .+++.+... +++|. ++|++..+......       ..|. ..  .....+.++++++.  +.|+
T Consensus        84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~-------~~g~-~~--~~~~~~~~~~~ll~~~~vD~  153 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAA-------EYGV-DP--RKIYDYSNFDKIAKDPKIDA  153 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHH-------HTTC-CG--GGEECSSSGGGGGGCTTCCE
T ss_pred             eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHH-------HhCC-Cc--ccccccCCHHHHhcCCCCCE
Confidence            5899999999997 899988875 67864 66765433110000       0000 00  00002467888887  7999


Q ss_pred             EEEecCC
Q 024297          229 VVCCLSL  235 (269)
Q Consensus       229 vv~~lp~  235 (269)
                      |++++|.
T Consensus       154 V~iatp~  160 (433)
T 1h6d_A          154 VYIILPN  160 (433)
T ss_dssp             EEECSCG
T ss_pred             EEEcCCc
Confidence            9999884

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=96.13  E-value=0.0036  Score=53.93  Aligned_cols=34  Identities=15%  Similarity=0.390  Sum_probs=27.5

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEE-EcCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIA-TKRSWA  187 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~-~~~~~~  187 (269)
                      .+|+|+|+|+||+.+++.+...+.++.+ ++++..
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~   38 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPK   38 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCcc
Confidence            4899999999999999999876557665 676543

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=96.12  E-value=0.019  Score=52.01  Aligned_cols=94  Identities=17%  Similarity=0.106  Sum_probs=55.5

Q ss_pred             CEEEEEe-cCchHHHHHHHhccCC------CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          154 KTVFILG-FGNIGVELAKRLRPFG------VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~G------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      .+|+|+| .|.+|+.+.++|...+      .+|..+.+..........     ..++  .....+-.....+. +.+..+
T Consensus        10 ~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~-----~~~~--l~~~~~~~~~~~~~-~~~~~~   81 (352)
T 2nqt_A           10 TKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGE-----HHPH--LTPLAHRVVEPTEA-AVLGGH   81 (352)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGG-----TCTT--CGGGTTCBCEECCH-HHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhh-----hccc--ccccceeeeccCCH-HHhcCC
Confidence            5899999 9999999999998876      477777532211000000     0000  00000000001122 345699


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|+.++|..      ...+... .++.|+.+|..+
T Consensus        82 DvVf~alg~~------~s~~~~~-~~~~G~~vIDlS  110 (352)
T 2nqt_A           82 DAVFLALPHG------HSAVLAQ-QLSPETLIIDCG  110 (352)
T ss_dssp             SEEEECCTTS------CCHHHHH-HSCTTSEEEECS
T ss_pred             CEEEECCCCc------chHHHHH-HHhCCCEEEEEC
Confidence            9999999844      3566666 557788888876

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.12  E-value=0.0045  Score=54.26  Aligned_cols=38  Identities=24%  Similarity=0.251  Sum_probs=34.8

Q ss_pred             ccccCCEEEEEecC---chHHHHHHHhccCCCEEEEEcCCC
Q 024297          149 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       149 ~~l~g~~vgIiG~G---~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      ..+.||++.|.|.+   .||+++|+.|...|++|++.+|+.
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~   66 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE   66 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence            46899999999986   899999999999999999999874

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.08  E-value=0.0041  Score=53.54  Aligned_cols=70  Identities=20%  Similarity=0.234  Sum_probs=47.4

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      .++|.|.|.|.||+.+++.|...|++|++++|+..+.....        ..+ +.-.   ..+..+++  +.++|+|+.+
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--------~~~-~~~~---~~D~~d~~--~~~~d~vi~~   70 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIR--------ASG-AEPL---LWPGEEPS--LDGVTHLLIS   70 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH--------HTT-EEEE---ESSSSCCC--CTTCCEEEEC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh--------hCC-CeEE---Eecccccc--cCCCCEEEEC
Confidence            47899999999999999999999999999998764311000        000 0000   11223343  7899999988


Q ss_pred             cCCC
Q 024297          233 LSLN  236 (269)
Q Consensus       233 lp~t  236 (269)
                      ....
T Consensus        71 a~~~   74 (286)
T 3ius_A           71 TAPD   74 (286)
T ss_dssp             CCCB
T ss_pred             CCcc
Confidence            7654

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.06  E-value=0.0024  Score=56.70  Aligned_cols=95  Identities=20%  Similarity=0.164  Sum_probs=61.8

Q ss_pred             ccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----
Q 024297          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----  224 (269)
Q Consensus       151 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----  224 (269)
                      -.|++|.|+| .|.+|+.+++.++..|++|++++++..+.....        .-| .+...+ . ...++.+.+.     
T Consensus       139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~--------~~G-a~~~~~-~-~~~~~~~~~~~~~~~  207 (325)
T 3jyn_A          139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAK--------ALG-AWETID-Y-SHEDVAKRVLELTDG  207 (325)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH--------HHT-CSEEEE-T-TTSCHHHHHHHHTTT
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--------HcC-CCEEEe-C-CCccHHHHHHHHhCC
Confidence            3688999999 899999999999999999999998654321110        001 011111 1 1133333322     


Q ss_pred             -hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 -KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 -~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                       ..|+|+.++..     .. -...+. .++++..++.++-
T Consensus       208 ~g~Dvvid~~g~-----~~-~~~~~~-~l~~~G~iv~~g~  240 (325)
T 3jyn_A          208 KKCPVVYDGVGQ-----DT-WLTSLD-SVAPRGLVVSFGN  240 (325)
T ss_dssp             CCEEEEEESSCG-----GG-HHHHHT-TEEEEEEEEECCC
T ss_pred             CCceEEEECCCh-----HH-HHHHHH-HhcCCCEEEEEec
Confidence             47999988752     12 234677 8999999999874

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=96.05  E-value=0.0071  Score=51.64  Aligned_cols=40  Identities=23%  Similarity=0.218  Sum_probs=35.3

Q ss_pred             ccccccCCEEEEEec---CchHHHHHHHhccCCCEEEEEcCCC
Q 024297          147 TGETLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       147 ~~~~l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      ....+.+|++.|.|.   |.||+++|+.|...|++|++.+|+.
T Consensus         8 ~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~   50 (271)
T 3ek2_A            8 HMGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGD   50 (271)
T ss_dssp             -CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecch
Confidence            346789999999996   5899999999999999999999874

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=96.04  E-value=0.0048  Score=52.05  Aligned_cols=70  Identities=16%  Similarity=0.156  Sum_probs=46.2

Q ss_pred             cCCEEEEEecCchHHHHHHHh--ccCCCEEE-EEcCCCC-Cccc-cccccchhhhccccccccccccCCCCCHHHHHhh-
Q 024297          152 LGKTVFILGFGNIGVELAKRL--RPFGVKII-ATKRSWA-SHSQ-VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK-  225 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l--~~~G~~V~-~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-  225 (269)
                      ...+|+|+|.|++|+++++.+  ...|+++. ++|.++. +.-. ..         +|     ..-. ..+++++++++ 
T Consensus        83 ~~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i---------~G-----vpV~-~~~dL~~~v~~~  147 (212)
T 3keo_A           83 STTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTE---------DG-----IPVY-GISTINDHLIDS  147 (212)
T ss_dssp             SCEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCT---------TC-----CBEE-EGGGHHHHC-CC
T ss_pred             CCCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeE---------CC-----eEEe-CHHHHHHHHHHc
Confidence            346899999999999999983  45688855 5666554 3110 00         11     1111 24678898884 


Q ss_pred             -CCEEEEecCCC
Q 024297          226 -ADVVVCCLSLN  236 (269)
Q Consensus       226 -aDvvv~~lp~t  236 (269)
                       .|++++++|..
T Consensus       148 ~Id~vIIAvPs~  159 (212)
T 3keo_A          148 DIETAILTVPST  159 (212)
T ss_dssp             SCCEEEECSCGG
T ss_pred             CCCEEEEecCch
Confidence             89999999954

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.03  E-value=0.0025  Score=57.59  Aligned_cols=94  Identities=15%  Similarity=0.073  Sum_probs=61.7

Q ss_pred             cCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----h
Q 024297          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  225 (269)
Q Consensus       152 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  225 (269)
                      .|++|.|+| .|.+|+.+++.++.+|++|++++++..+......        -| .+...+ . ...++.+.+.     .
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~--------~G-a~~~~~-~-~~~~~~~~~~~~~~~g  231 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS--------LG-CDRPIN-Y-KTEPVGTVLKQEYPEG  231 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH--------TT-CSEEEE-T-TTSCHHHHHHHHCTTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH--------cC-CcEEEe-c-CChhHHHHHHHhcCCC
Confidence            578999999 7999999999999999999999986433111000        00 011111 0 1234444443     4


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      .|+|+.++..     .. -...++ .|+++..+|.++-
T Consensus       232 ~D~vid~~g~-----~~-~~~~~~-~l~~~G~iv~~g~  262 (362)
T 2c0c_A          232 VDVVYESVGG-----AM-FDLAVD-ALATKGRLIVIGF  262 (362)
T ss_dssp             EEEEEECSCT-----HH-HHHHHH-HEEEEEEEEECCC
T ss_pred             CCEEEECCCH-----HH-HHHHHH-HHhcCCEEEEEeC
Confidence            7999998762     11 244677 8999999998874

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.01  E-value=0.0061  Score=52.64  Aligned_cols=42  Identities=21%  Similarity=0.337  Sum_probs=35.1

Q ss_pred             ccccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       147 ~~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ...++.||++.|.|. |.||+++|+.|...|++|++++++...
T Consensus         8 ~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~   50 (269)
T 3vtz_A            8 HMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKS   50 (269)
T ss_dssp             --CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--
T ss_pred             cccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence            346799999999995 689999999999999999999987654

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.01  E-value=0.0041  Score=55.50  Aligned_cols=101  Identities=16%  Similarity=0.151  Sum_probs=58.5

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCCccccccccchhhhccccccccc-cccCCCCCHHHHHhhCCEE
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDvv  229 (269)
                      ..+|+|||.|++|..++..+...|.  +|..+|.+..+.....   .++  .++  .... ....-..+..+.++.||+|
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~---~dl--~~~--~~~~~~~~~v~~~~~~a~~~aDvV   78 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDV---MDL--KHA--TPYSPTTVRVKAGEYSDCHDADLV   78 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHH---HHH--HHH--GGGSSSCCEEEECCGGGGTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhh---hhH--Hhh--hhhcCCCeEEEeCCHHHhCCCCEE
Confidence            4699999999999999998886664  8999998643211000   000  000  0000 0000001235668999999


Q ss_pred             EEecCCCccccCc-------CCH-------HHHhhhCCCCcEEEEcc
Q 024297          230 VCCLSLNKQTVKL-------CSS-------SLSSKSMFFATYVVFMF  262 (269)
Q Consensus       230 v~~lp~t~~t~~l-------i~~-------~~l~~~mk~ga~lIN~~  262 (269)
                      +++.+.. ...+.       .|.       +.+. ...|++++||++
T Consensus        79 vi~ag~~-~~~g~~r~dl~~~n~~i~~~i~~~i~-~~~p~a~viv~t  123 (317)
T 3d0o_A           79 VICAGAA-QKPGETRLDLVSKNLKIFKSIVGEVM-ASKFDGIFLVAT  123 (317)
T ss_dssp             EECCCCC-CCTTCCHHHHHHHHHHHHHHHHHHHH-HTTCCSEEEECS
T ss_pred             EECCCCC-CCCCCcHHHHHHHHHHHHHHHHHHHH-HhCCCcEEEEec
Confidence            9998743 22221       011       1233 347899999875

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=95.99  E-value=0.0078  Score=52.99  Aligned_cols=64  Identities=16%  Similarity=0.198  Sum_probs=45.8

Q ss_pred             CCEEEEEec-CchHHHHHHHhccCCCEEE-EEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh--hCCE
Q 024297          153 GKTVFILGF-GNIGVELAKRLRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV  228 (269)
Q Consensus       153 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDv  228 (269)
                      ..+|+|+|+ |++|+.+++.++..|++++ .+++..... ..               ....   .+.+++++..  ..|+
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~-~~---------------~G~~---vy~sl~el~~~~~~D~   67 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGT-TH---------------LGLP---VFNTVREAVAATGATA   67 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC-EE---------------TTEE---EESSHHHHHHHHCCCE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccc-ee---------------CCee---ccCCHHHHhhcCCCCE
Confidence            468999999 9999999999998899844 555532110 00               0000   2467889888  8999


Q ss_pred             EEEecCC
Q 024297          229 VVCCLSL  235 (269)
Q Consensus       229 vv~~lp~  235 (269)
                      +++++|.
T Consensus        68 viI~tP~   74 (288)
T 2nu8_A           68 SVIYVPA   74 (288)
T ss_dssp             EEECCCG
T ss_pred             EEEecCH
Confidence            9999984

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=95.96  E-value=0.016  Score=51.64  Aligned_cols=75  Identities=20%  Similarity=0.155  Sum_probs=47.1

Q ss_pred             CEEEEEec-CchHHHHHHHhccCC--CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          154 KTVFILGF-GNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      .+|+|+|. |.+|+.++..|...|  .+|..+|+...+ ....    ++  .+..............++++.++.||+|+
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~-~~a~----dL--~~~~~~~~l~~~~~t~d~~~a~~~aDvVv   73 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP-GVAA----DL--SHIETRATVKGYLGPEQLPDCLKGCDVVV   73 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHH-HHHH----HH--TTSSSSCEEEEEESGGGHHHHHTTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccH-HHHH----HH--hccCcCceEEEecCCCCHHHHhCCCCEEE
Confidence            37999998 999999999998777  689999986511 1100    00  00000000000000146888999999999


Q ss_pred             EecCC
Q 024297          231 CCLSL  235 (269)
Q Consensus       231 ~~lp~  235 (269)
                      ++...
T Consensus        74 i~ag~   78 (314)
T 1mld_A           74 IPAGV   78 (314)
T ss_dssp             ECCSC
T ss_pred             ECCCc
Confidence            99763

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=95.96  E-value=0.0031  Score=56.83  Aligned_cols=30  Identities=30%  Similarity=0.526  Sum_probs=25.5

Q ss_pred             CEEEEEecCchHHHHHHHhcc-CCCEEEEEc
Q 024297          154 KTVFILGFGNIGVELAKRLRP-FGVKIIATK  183 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~-~G~~V~~~~  183 (269)
                      .+|||+|+|.||+.+++.|.. -+++|.++.
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~   32 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVS   32 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEE
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEE
Confidence            379999999999999999886 478877664

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.95  E-value=0.0049  Score=53.53  Aligned_cols=84  Identities=18%  Similarity=0.159  Sum_probs=50.8

Q ss_pred             CCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCcccc-ccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          153 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQV-SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       153 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      +++|.|.|. |.+|+.+++.|...|++|++.+|+......+ .....-..+...++.-...+....+++.++++.+|+|+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   81 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI   81 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence            578999995 9999999999999999999999875110000 00000000000001111111223456888899999999


Q ss_pred             EecCCC
Q 024297          231 CCLSLN  236 (269)
Q Consensus       231 ~~lp~t  236 (269)
                      .+.+..
T Consensus        82 ~~a~~~   87 (307)
T 2gas_A           82 CAAGRL   87 (307)
T ss_dssp             ECSSSS
T ss_pred             ECCccc
Confidence            887643

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=95.92  E-value=0.018  Score=52.21  Aligned_cols=103  Identities=18%  Similarity=0.114  Sum_probs=56.9

Q ss_pred             CEEEEEecCchHHHHHHHhccC-CCEEEEEcC-CCCCcc--ccccccchhhhcccccc----cc-c--cc--cCCCCCHH
Q 024297          154 KTVFILGFGNIGVELAKRLRPF-GVKIIATKR-SWASHS--QVSCQSSALAVKNGIID----DL-V--DE--KGCHEDIF  220 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~----~~-~--~~--~~~~~~l~  220 (269)
                      .+|||+|+|.||+.+.+.|... .++|.+++. ......  ....-.+.+.-.+|.+.    .+ +  ..  .....+.+
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~dp~   97 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPA   97 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSCGG
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCChH
Confidence            3899999999999999998876 789888774 221100  00000000000011000    00 0  00  00111233


Q ss_pred             HH-H--hhCCEEEEecCCCccccCcCCHHHHhhhCCCCc--EEEEcc
Q 024297          221 EF-A--SKADVVVCCLSLNKQTVKLCSSSLSSKSMFFAT--YVVFMF  262 (269)
Q Consensus       221 el-l--~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga--~lIN~~  262 (269)
                      ++ .  ..+|+|+.++|      +..+.+...+.++.|+  ++|..+
T Consensus        98 ~i~w~~~~vDvV~eatg------~~~s~e~a~~~l~~GakkvVId~p  138 (354)
T 3cps_A           98 EIPWGASGAQIVCESTG------VFTTEEKASLHLKGGAKKVIISAP  138 (354)
T ss_dssp             GCCHHHHTCCEEEECSS------SCCSHHHHGGGGTTTCSEEEESSC
T ss_pred             HCCcccCCCCEEEECCC------chhhHHHHHHHHHcCCcEEEEeCC
Confidence            32 1  47999999987      4555666665788898  888775

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=95.92  E-value=0.0088  Score=53.54  Aligned_cols=93  Identities=12%  Similarity=0.050  Sum_probs=60.1

Q ss_pred             CCEEEEE-ecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH------hh
Q 024297          153 GKTVFIL-GFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA------SK  225 (269)
Q Consensus       153 g~~vgIi-G~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~  225 (269)
                      +++|.|. |.|.||+.+++.++.+|++|++++++..+......        -| .+..++.  ...++.+.+      ..
T Consensus       165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~--------~G-a~~~~~~--~~~~~~~~v~~~~~~~g  233 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKD--------IG-AAHVLNE--KAPDFEATLREVMKAEQ  233 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHH--------HT-CSEEEET--TSTTHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------cC-CCEEEEC--CcHHHHHHHHHHhcCCC
Confidence            3677665 89999999999999999999999986654211100        00 0111111  113333332      25


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      .|+++.++.. +   .+  ...+. .++++..+|++|-
T Consensus       234 ~D~vid~~g~-~---~~--~~~~~-~l~~~G~iv~~G~  264 (349)
T 3pi7_A          234 PRIFLDAVTG-P---LA--SAIFN-AMPKRARWIIYGR  264 (349)
T ss_dssp             CCEEEESSCH-H---HH--HHHHH-HSCTTCEEEECCC
T ss_pred             CcEEEECCCC-h---hH--HHHHh-hhcCCCEEEEEec
Confidence            9999998752 1   11  55778 9999999999873

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.92  E-value=0.015  Score=54.90  Aligned_cols=92  Identities=11%  Similarity=0.094  Sum_probs=65.7

Q ss_pred             ccccCCEEEEEecC----------chHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCC
Q 024297          149 ETLLGKTVFILGFG----------NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED  218 (269)
Q Consensus       149 ~~l~g~~vgIiG~G----------~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (269)
                      ..+.|++|+|+|+-          +=...+++.|...|++|.+||+.....                 ..    ..-..+
T Consensus       349 ~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~-----------------~~----~~~~~~  407 (478)
T 3g79_A          349 KKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNY-----------------PG----VEISDN  407 (478)
T ss_dssp             CCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCB-----------------TT----BCEESC
T ss_pred             cCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccc-----------------cC----cceecC
Confidence            46899999999963          457899999999999999999865420                 00    011257


Q ss_pred             HHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCC-CCcEEEEccCC
Q 024297          219 IFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMF-FATYVVFMFQG  264 (269)
Q Consensus       219 l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk-~ga~lIN~~RG  264 (269)
                      +.+.++.+|+|+++.+.. +.+. ++.+.+...|+ +..++++. |+
T Consensus       408 ~~~~~~~ad~vvi~t~~~-~f~~-~d~~~~~~~~~~~~~~i~D~-rn  451 (478)
T 3g79_A          408 LEEVVRNADAIVVLAGHS-AYSS-LKADWAKKVSAKANPVIIDG-RN  451 (478)
T ss_dssp             HHHHHTTCSEEEECSCCH-HHHS-CCHHHHHHHHCCSSCEEEES-SS
T ss_pred             HHHHHhcCCEEEEecCCH-HHHh-hhHHHHHHHhccCCCEEEEC-CC
Confidence            899999999999997643 3333 35555543677 37788874 55

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=95.91  E-value=0.0076  Score=50.43  Aligned_cols=76  Identities=20%  Similarity=0.085  Sum_probs=51.0

Q ss_pred             ccCCEEEEEe-cCchHHHHHHHhccC--CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          151 LLGKTVFILG-FGNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       151 l~g~~vgIiG-~G~iG~~~a~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      ..+++|.|.| .|.||+++++.|...  |++|++.+|+..+.. ..        . ..+.-...+....+++.+++++.|
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~-~~--------~-~~~~~~~~D~~d~~~~~~~~~~~d   71 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKE-KI--------G-GEADVFIGDITDADSINPAFQGID   71 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHH-HT--------T-CCTTEEECCTTSHHHHHHHHTTCS
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchh-hc--------C-CCeeEEEecCCCHHHHHHHHcCCC
Confidence            3578999999 699999999999988  899999998643210 00        0 000001111113356788899999


Q ss_pred             EEEEecCCC
Q 024297          228 VVVCCLSLN  236 (269)
Q Consensus       228 vvv~~lp~t  236 (269)
                      +|+.+....
T Consensus        72 ~vi~~a~~~   80 (253)
T 1xq6_A           72 ALVILTSAV   80 (253)
T ss_dssp             EEEECCCCC
T ss_pred             EEEEecccc
Confidence            999887543

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.91  E-value=0.021  Score=49.25  Aligned_cols=38  Identities=24%  Similarity=0.205  Sum_probs=34.2

Q ss_pred             ccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCC
Q 024297          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       149 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      ..+.||++.|.|. |.||+++|+.|...|++|++++++.
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~   44 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICH   44 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccc
Confidence            4689999999995 6899999999999999999999863

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=95.88  E-value=0.0065  Score=54.59  Aligned_cols=66  Identities=11%  Similarity=0.130  Sum_probs=43.7

Q ss_pred             CEEEEEecCchHH-HHHHHhccC-CCEEE-EEcCCCCCccccccccchhhhccccccccc--cccCCCCCHHHHHhh--C
Q 024297          154 KTVFILGFGNIGV-ELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLV--DEKGCHEDIFEFASK--A  226 (269)
Q Consensus       154 ~~vgIiG~G~iG~-~~a~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~--a  226 (269)
                      .+|||||+|.||+ ..+..++.. +++|. +++++ ..  ...      +       ...  .....+.++++++.+  .
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~-~~--~~~------a-------~~~~~~~~~~~~~~~~ll~~~~~   66 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH-VN--EKA------A-------APFKEKGVNFTADLNELLTDPEI   66 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT-CC--HHH------H-------HHHHTTTCEEESCTHHHHSCTTC
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC-HH--HHH------H-------HhhCCCCCeEECCHHHHhcCCCC
Confidence            3899999999999 677777765 78876 55655 11  100      0       000  000134688999985  8


Q ss_pred             CEEEEecCC
Q 024297          227 DVVVCCLSL  235 (269)
Q Consensus       227 Dvvv~~lp~  235 (269)
                      |+|+++.|.
T Consensus        67 D~V~i~tp~   75 (349)
T 3i23_A           67 ELITICTPA   75 (349)
T ss_dssp             CEEEECSCG
T ss_pred             CEEEEeCCc
Confidence            999999884

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=95.87  E-value=0.0075  Score=52.33  Aligned_cols=75  Identities=15%  Similarity=0.071  Sum_probs=50.1

Q ss_pred             CCEEEEEec-CchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          153 GKTVFILGF-GNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       153 g~~vgIiG~-G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      .++|.|.|. |.+|+.+++.|...| ++|.+.+|+..+.....       +...++.-...+....+++.++++.+|+|+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~-------l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi   77 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKE-------LRLQGAEVVQGDQDDQVIMELALNGAYATF   77 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHH-------HHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHH-------HHHCCCEEEEecCCCHHHHHHHHhcCCEEE
Confidence            578999997 999999999999888 99999999765421000       000000111111223456788899999999


Q ss_pred             EecC
Q 024297          231 CCLS  234 (269)
Q Consensus       231 ~~lp  234 (269)
                      .+.+
T Consensus        78 ~~a~   81 (299)
T 2wm3_A           78 IVTN   81 (299)
T ss_dssp             ECCC
T ss_pred             EeCC
Confidence            8764

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=95.85  E-value=0.012  Score=51.88  Aligned_cols=82  Identities=20%  Similarity=0.149  Sum_probs=50.5

Q ss_pred             cccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh-
Q 024297          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK-  225 (269)
Q Consensus       148 ~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-  225 (269)
                      ...+.+++|.|.| .|.||+.+++.|...|++|++++|+..........   +    ..+.-...+....+++.++++. 
T Consensus        16 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~---~----~~~~~~~~Dl~d~~~~~~~~~~~   88 (333)
T 2q1w_A           16 PRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKD---H----PNLTFVEGSIADHALVNQLIGDL   88 (333)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCC---C----TTEEEEECCTTCHHHHHHHHHHH
T ss_pred             eecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhh---c----CCceEEEEeCCCHHHHHHHHhcc
Confidence            3567889999998 69999999999999999999999875432110000   0    0000011111123457788888 


Q ss_pred             -CCEEEEecCCC
Q 024297          226 -ADVVVCCLSLN  236 (269)
Q Consensus       226 -aDvvv~~lp~t  236 (269)
                       +|+|+.+....
T Consensus        89 ~~D~vih~A~~~  100 (333)
T 2q1w_A           89 QPDAVVHTAASY  100 (333)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCcEEEECceec
Confidence             99999887543

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.85  E-value=0.0089  Score=55.95  Aligned_cols=97  Identities=15%  Similarity=0.163  Sum_probs=66.2

Q ss_pred             cccccCCEEEEEec----------CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccccc-ccCCC
Q 024297          148 GETLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCH  216 (269)
Q Consensus       148 ~~~l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  216 (269)
                      +..+.|++|+|+|+          -+-...+++.|...|++|.+||+...+...                .... .....
T Consensus       313 ~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~----------------~~~~~~~~~~  376 (450)
T 3gg2_A          313 KGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQ----------------KRLGDKVEYT  376 (450)
T ss_dssp             TTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHH----------------HHHGGGSEEC
T ss_pred             cccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHH----------------HhcCccceec
Confidence            35689999999997          356789999999999999999986532100                0000 01123


Q ss_pred             CCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          217 EDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       217 ~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      .++.+.++.+|+|+++.+.. +.+. ++.+.+.+.|+ +.++++. |+
T Consensus       377 ~~~~~~~~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~-~~~i~D~-r~  420 (450)
T 3gg2_A          377 TDMYDAVRGAEALFHVTEWK-EFRM-PDWSALSQAMA-ASLVIDG-RN  420 (450)
T ss_dssp             SSHHHHTTTCSCEEECSCCG-GGSS-CCHHHHHHHSS-SCEEEES-SC
T ss_pred             CCHHHHhcCCCEEEEccCCH-HHhh-cCHHHHHHhcC-CCEEEEC-CC
Confidence            57889999999999998754 3333 35555553566 5567774 54

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=95.84  E-value=0.035  Score=51.65  Aligned_cols=87  Identities=15%  Similarity=0.123  Sum_probs=64.4

Q ss_pred             cccCCEEEEEec----------CchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCC
Q 024297          150 TLLGKTVFILGF----------GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED  218 (269)
Q Consensus       150 ~l~g~~vgIiG~----------G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (269)
                      .+.|++|+|+|+          -+-...+++.|... |++|.+||+.....                        ....+
T Consensus       312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~------------------------~~~~~  367 (431)
T 3ojo_A          312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD------------------------FVEHD  367 (431)
T ss_dssp             HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT------------------------TBCST
T ss_pred             hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc------------------------cccCC
Confidence            478999999996          35688999999998 99999999865431                        01256


Q ss_pred             HHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          219 IFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       219 l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +.+.++.+|+|+++.+.. +.+.+ +.+.++ .|+ +.++++. |+-
T Consensus       368 ~~~~~~~ad~vvi~t~~~-~f~~~-d~~~~~-~~~-~~~i~D~-r~~  409 (431)
T 3ojo_A          368 MSHAVKDASLVLILSDHS-EFKNL-SDSHFD-KMK-HKVIFDT-KNV  409 (431)
T ss_dssp             THHHHTTCSEEEECSCCG-GGTSC-CGGGGT-TCS-SCEEEES-SCC
T ss_pred             HHHHHhCCCEEEEecCCH-HHhcc-CHHHHH-hCC-CCEEEEC-CCC
Confidence            789999999999998744 33333 445566 777 6677775 553

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=95.82  E-value=0.004  Score=55.89  Aligned_cols=77  Identities=19%  Similarity=0.153  Sum_probs=46.5

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      ..+|+|||.|++|..++..+...+.  +|..+|....+.....   .++  .+.  ........-..+-.+.++.||+|+
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~---~dl--~~~--~~~~~~~~i~~~~~~a~~~aDvVi   81 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDA---IDL--SNA--LPFTSPKKIYSAEYSDAKDADLVV   81 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHH---HHH--HTT--GGGSCCCEEEECCGGGGGGCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHH---HHH--HHH--HHhcCCeEEEECCHHHhCCCCEEE
Confidence            3699999999999999999886665  8999998643311100   000  000  000000000012356689999999


Q ss_pred             EecCCC
Q 024297          231 CCLSLN  236 (269)
Q Consensus       231 ~~lp~t  236 (269)
                      ++.+..
T Consensus        82 i~ag~~   87 (326)
T 2zqz_A           82 ITAGAP   87 (326)
T ss_dssp             ECCCCC
T ss_pred             EcCCCC
Confidence            998743

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.82  E-value=0.0024  Score=57.21  Aligned_cols=96  Identities=14%  Similarity=0.154  Sum_probs=60.4

Q ss_pred             cCCEEEEEecCchHHHHHHHhccC--CCEEEEEcCCCCCccccccccchhhhccccccccccccCC-CCCHHHHHh--hC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC-HEDIFEFAS--KA  226 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~--~a  226 (269)
                      .|.+|.|+|.|.+|+.+++.++.+  |++|++++++..+......        -| .+..++. .. .+...++..  ..
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~--------lG-a~~vi~~-~~~~~~~~~~~~g~g~  239 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE--------LG-ADYVSEM-KDAESLINKLTDGLGA  239 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH--------HT-CSEEECH-HHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH--------hC-CCEEecc-ccchHHHHHhhcCCCc
Confidence            789999999999999999999999  9999999976544211100        00 0001100 00 001222222  57


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |+|+.++... +   . -...++ .++++..++.++-
T Consensus       240 D~vid~~g~~-~---~-~~~~~~-~l~~~G~iv~~g~  270 (344)
T 2h6e_A          240 SIAIDLVGTE-E---T-TYNLGK-LLAQEGAIILVGM  270 (344)
T ss_dssp             EEEEESSCCH-H---H-HHHHHH-HEEEEEEEEECCC
T ss_pred             cEEEECCCCh-H---H-HHHHHH-HhhcCCEEEEeCC
Confidence            9999998632 1   1 144677 8999999998874

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=95.82  E-value=0.0044  Score=55.74  Aligned_cols=101  Identities=8%  Similarity=-0.038  Sum_probs=59.6

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCCcccc---ccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQV---SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      ..++|+|||.|.||..+|..+...|.  +|..+|.+..+....   ..+...+  +.      ........+.++ +++|
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~--~~------~~~i~~t~d~~~-~~da   90 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLF--LH------TAKIVSGKDYSV-SAGS   90 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGG--SC------CSEEEEESSSCS-CSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhc--cc------CCeEEEcCCHHH-hCCC
Confidence            56899999999999999999987777  999999865321100   0000000  00      000001134444 8999


Q ss_pred             CEEEEecCCCc---ccc-CcCCH---------HHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNK---QTV-KLCSS---------SLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~---~t~-~li~~---------~~l~~~mk~ga~lIN~~  262 (269)
                      |+|+++.....   .|| .++..         +.+. ...|++++++++
T Consensus        91 DiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~-k~~P~a~ilvvt  138 (330)
T 3ldh_A           91 KLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIV-KHSPDCLKELHP  138 (330)
T ss_dssp             SEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHH-HHCTTCEEEECS
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHH-hhCCCceEEeCC
Confidence            99999865321   122 12211         1334 347889999876

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=95.81  E-value=0.0052  Score=53.83  Aligned_cols=77  Identities=25%  Similarity=0.336  Sum_probs=50.2

Q ss_pred             CEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      ++|.|+| .|.+|+.+++.|...|.+|++.+|+..........   +. ..| +.-...+....+++.++++.+|+|+.+
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~---l~-~~~-v~~v~~Dl~d~~~l~~a~~~~d~vi~~   86 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDE---FQ-SLG-AIIVKGELDEHEKLVELMKKVDVVISA   86 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHH---HH-HTT-CEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHH---hh-cCC-CEEEEecCCCHHHHHHHHcCCCEEEEC
Confidence            5899999 59999999999999999999999876421110000   00 001 011111122345688899999999988


Q ss_pred             cCC
Q 024297          233 LSL  235 (269)
Q Consensus       233 lp~  235 (269)
                      .+.
T Consensus        87 a~~   89 (318)
T 2r6j_A           87 LAF   89 (318)
T ss_dssp             CCG
T ss_pred             Cch
Confidence            763

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=95.80  E-value=0.012  Score=53.02  Aligned_cols=31  Identities=29%  Similarity=0.380  Sum_probs=26.8

Q ss_pred             CEEEEEecCchHHHHHHHhccC-CCEEEEEcC
Q 024297          154 KTVFILGFGNIGVELAKRLRPF-GVKIIATKR  184 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~  184 (269)
                      .+|||+|+|.||+.+++.+... +++|.+++.
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d   35 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVND   35 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEEC
Confidence            3899999999999999998875 788887764

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.80  E-value=0.0091  Score=52.90  Aligned_cols=85  Identities=19%  Similarity=0.117  Sum_probs=53.1

Q ss_pred             cccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcc---ccccccccccCCCCCHHHHHhh
Q 024297          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKN---GIIDDLVDEKGCHEDIFEFASK  225 (269)
Q Consensus       150 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~ell~~  225 (269)
                      .+.+++|.|.| .|-||+.+++.|...|.+|++++|+.............. ...   +.+.-...+....+++.++++.
T Consensus        22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~  100 (351)
T 3ruf_A           22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTL-VSTEQWSRFCFIEGDIRDLTTCEQVMKG  100 (351)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHT-SCHHHHTTEEEEECCTTCHHHHHHHTTT
T ss_pred             CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhc-cccccCCceEEEEccCCCHHHHHHHhcC
Confidence            36789999999 599999999999999999999998765422111000000 000   0000111112233457788889


Q ss_pred             CCEEEEecCC
Q 024297          226 ADVVVCCLSL  235 (269)
Q Consensus       226 aDvvv~~lp~  235 (269)
                      +|+|+.+...
T Consensus       101 ~d~Vih~A~~  110 (351)
T 3ruf_A          101 VDHVLHQAAL  110 (351)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            9999888753

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=95.79  E-value=0.011  Score=51.56  Aligned_cols=71  Identities=18%  Similarity=0.193  Sum_probs=49.1

Q ss_pred             CCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          153 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       153 g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      +++|.|.| .|.||+.+++.|...|.+|++++|+... .. ..         + +.-...+.. .+++.++++.+|+|+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~-~~---------~-~~~~~~Dl~-~~~~~~~~~~~d~Vih   68 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGN-KA-IN---------D-YEYRVSDYT-LEDLINQLNDVDAVVH   68 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC----------------C-CEEEECCCC-HHHHHHHTTTCSEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCc-cc-CC---------c-eEEEEcccc-HHHHHHhhcCCCEEEE
Confidence            47899999 6999999999999999999999998322 11 10         0 001111122 3567788899999998


Q ss_pred             ecCCC
Q 024297          232 CLSLN  236 (269)
Q Consensus       232 ~lp~t  236 (269)
                      +....
T Consensus        69 ~a~~~   73 (311)
T 3m2p_A           69 LAATR   73 (311)
T ss_dssp             CCCCC
T ss_pred             ccccC
Confidence            87643

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=95.78  E-value=0.017  Score=52.22  Aligned_cols=96  Identities=19%  Similarity=0.215  Sum_probs=59.7

Q ss_pred             ccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh---hC
Q 024297          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS---KA  226 (269)
Q Consensus       151 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~a  226 (269)
                      -.|++|.|+| .|.+|+.+++.++.+|++|++.++ ..+. ....       .-| .+..++ . ...++.+.+.   ..
T Consensus       182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~~~~-~~~~-------~lG-a~~v~~-~-~~~~~~~~~~~~~g~  249 (375)
T 2vn8_A          182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-QDAS-ELVR-------KLG-ADDVID-Y-KSGSVEEQLKSLKPF  249 (375)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-GGGH-HHHH-------HTT-CSEEEE-T-TSSCHHHHHHTSCCB
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-hHHH-HHHH-------HcC-CCEEEE-C-CchHHHHHHhhcCCC
Confidence            3688999999 799999999999999999999873 2221 1110       001 011111 1 1134444333   58


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |+++.++.....+   + ...+. .++++..+|.++-
T Consensus       250 D~vid~~g~~~~~---~-~~~~~-~l~~~G~iv~~g~  281 (375)
T 2vn8_A          250 DFILDNVGGSTET---W-APDFL-KKWSGATYVTLVT  281 (375)
T ss_dssp             SEEEESSCTTHHH---H-GGGGB-CSSSCCEEEESCC
T ss_pred             CEEEECCCChhhh---h-HHHHH-hhcCCcEEEEeCC
Confidence            9999987632110   1 23566 7899999998874

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=95.77  E-value=0.012  Score=52.92  Aligned_cols=80  Identities=14%  Similarity=0.188  Sum_probs=45.5

Q ss_pred             CEEEEEecCchHHHHHHHhccC-CCEEEEEc-CCCCCccccccccchhhhc-ccccccc---cc--ccCCCCCHHHHHhh
Q 024297          154 KTVFILGFGNIGVELAKRLRPF-GVKIIATK-RSWASHSQVSCQSSALAVK-NGIIDDL---VD--EKGCHEDIFEFASK  225 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~--~~~~~~~l~ell~~  225 (269)
                      .+|||+|+|.||+.+++.+... +++|.++. ++.+........   +.++ ++.....   +.  ......+.++++.+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~---~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~   79 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKE---LGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEK   79 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHH---TTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTT
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHh---cCccccccccccceeccCCceEEcCcHHHhccC
Confidence            3799999999999999998875 67876654 432211000000   0000 0000000   00  01123578888889


Q ss_pred             CCEEEEecCCC
Q 024297          226 ADVVVCCLSLN  236 (269)
Q Consensus       226 aDvvv~~lp~t  236 (269)
                      .|+|+.+.|..
T Consensus        80 vDvV~~aTp~~   90 (334)
T 2czc_A           80 VDIIVDATPGG   90 (334)
T ss_dssp             CSEEEECCSTT
T ss_pred             CCEEEECCCcc
Confidence            99999998843

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=95.76  E-value=0.0077  Score=51.40  Aligned_cols=71  Identities=7%  Similarity=0.149  Sum_probs=49.5

Q ss_pred             CEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      ++|.|.|. |.||+.+++.|...|++|++++|+..+...           .+ +.-...+....+++.++++..|+|+.+
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----------~~-~~~~~~Dl~d~~~~~~~~~~~d~vi~~   70 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAE-----------AH-EEIVACDLADAQAVHDLVKDCDGIIHL   70 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCCC-----------TT-EEECCCCTTCHHHHHHHHTTCSEEEEC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccccC-----------CC-ccEEEccCCCHHHHHHHHcCCCEEEEC
Confidence            58999997 999999999999999999999997653210           00 000111111234577889999999988


Q ss_pred             cCCC
Q 024297          233 LSLN  236 (269)
Q Consensus       233 lp~t  236 (269)
                      ....
T Consensus        71 a~~~   74 (267)
T 3ay3_A           71 GGVS   74 (267)
T ss_dssp             CSCC
T ss_pred             CcCC
Confidence            7543

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=95.76  E-value=0.0037  Score=57.04  Aligned_cols=65  Identities=20%  Similarity=0.197  Sum_probs=45.8

Q ss_pred             CEEEEEecC-chHHHHHHHhccC-CCEEE-EEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhh--C
Q 024297          154 KTVFILGFG-NIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK--A  226 (269)
Q Consensus       154 ~~vgIiG~G-~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~--a  226 (269)
                      .+|||||+| .+|+..+..+... +++|. ++|++..+..                 .....++  .+.++++++.+  .
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~a~~~g~~~~~~~~ell~~~~v   65 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRE-----------------RFGKEYGIPVFATLAEMMQHVQM   65 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHH-----------------HHHHHHTCCEESSHHHHHHHSCC
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHH-----------------HHHHHcCCCeECCHHHHHcCCCC
Confidence            489999999 9999999988865 67866 5566543311                 1111111  34789999985  8


Q ss_pred             CEEEEecCC
Q 024297          227 DVVVCCLSL  235 (269)
Q Consensus       227 Dvvv~~lp~  235 (269)
                      |+|+++.|.
T Consensus        66 D~V~i~tp~   74 (387)
T 3moi_A           66 DAVYIASPH   74 (387)
T ss_dssp             SEEEECSCG
T ss_pred             CEEEEcCCc
Confidence            999999884

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=95.75  E-value=0.0071  Score=51.94  Aligned_cols=40  Identities=30%  Similarity=0.339  Sum_probs=35.4

Q ss_pred             ccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       149 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ..+.+|++.|.|. |.||+++|+.|...|++|++.+|+..+
T Consensus        24 ~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   64 (260)
T 3un1_A           24 MRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKP   64 (260)
T ss_dssp             HHTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCC
T ss_pred             hCcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            4588999999995 789999999999999999999987654

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=95.74  E-value=0.012  Score=51.35  Aligned_cols=38  Identities=16%  Similarity=0.125  Sum_probs=34.0

Q ss_pred             ccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       149 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      ..+.||++.|.| .|.||+++|+.|...|++|++.+++.
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~   83 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPA   83 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            468999999999 47899999999999999999998763

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=95.74  E-value=0.011  Score=53.11  Aligned_cols=81  Identities=15%  Similarity=0.145  Sum_probs=52.6

Q ss_pred             ccccCCEEEEEec-CchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          149 ETLLGKTVFILGF-GNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       149 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      ..+.+++|.|.|. |.||+.+++.|...| .+|++++|+.........       ....+.-...+....+++.++++.+
T Consensus        28 ~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~-------~~~~v~~~~~Dl~d~~~l~~~~~~~  100 (377)
T 2q1s_A           28 SKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVP-------DHPAVRFSETSITDDALLASLQDEY  100 (377)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSC-------CCTTEEEECSCTTCHHHHHHCCSCC
T ss_pred             HHhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhcc-------CCCceEEEECCCCCHHHHHHHhhCC
Confidence            3578899999995 999999999999999 999999987544211100       0000000111111223466777899


Q ss_pred             CEEEEecCCC
Q 024297          227 DVVVCCLSLN  236 (269)
Q Consensus       227 Dvvv~~lp~t  236 (269)
                      |+|+.+....
T Consensus       101 d~Vih~A~~~  110 (377)
T 2q1s_A          101 DYVFHLATYH  110 (377)
T ss_dssp             SEEEECCCCS
T ss_pred             CEEEECCCcc
Confidence            9999887543

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=95.74  E-value=0.012  Score=51.70  Aligned_cols=37  Identities=32%  Similarity=0.410  Sum_probs=32.9

Q ss_pred             cCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       152 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .+++|.|.|. |.||+.+++.|...|++|++++|+..+
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~   39 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGE   39 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCST
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcc
Confidence            5789999996 999999999999999999999987654

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=95.74  E-value=0.017  Score=50.54  Aligned_cols=71  Identities=17%  Similarity=0.155  Sum_probs=45.7

Q ss_pred             CEEEEEe-cCchHHHHHHHhcc-CCCEEEE-EcCCCCCcc-ccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          154 KTVFILG-FGNIGVELAKRLRP-FGVKIIA-TKRSWASHS-QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~-~G~~V~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      .+|+|+| +|.||+.+++.+.. -++++.+ ++++..+.. .....      .-|    .........++++++.++|+|
T Consensus         8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~ge------l~g----~~~gv~v~~dl~~ll~~~DVV   77 (272)
T 4f3y_A            8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGA------FLG----KQTGVALTDDIERVCAEADYL   77 (272)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTT------TTT----CCCSCBCBCCHHHHHHHCSEE
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHH------HhC----CCCCceecCCHHHHhcCCCEE
Confidence            5899999 99999999998874 5888776 576543210 00000      000    000011247899999999999


Q ss_pred             EEecC
Q 024297          230 VCCLS  234 (269)
Q Consensus       230 v~~lp  234 (269)
                      +-+.+
T Consensus        78 IDfT~   82 (272)
T 4f3y_A           78 IDFTL   82 (272)
T ss_dssp             EECSC
T ss_pred             EEcCC
Confidence            98764

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.74  E-value=0.005  Score=54.56  Aligned_cols=94  Identities=15%  Similarity=0.142  Sum_probs=60.4

Q ss_pred             cCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh------
Q 024297          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS------  224 (269)
Q Consensus       152 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~------  224 (269)
                      .|++|.|+| .|.||+.+++.++..|++|++++++..+......        -| .+...+ . ...++.+.+.      
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~--------~g-~~~~~~-~-~~~~~~~~~~~~~~~~  208 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK--------AG-AWQVIN-Y-REEDLVERLKEITGGK  208 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH--------HT-CSEEEE-T-TTSCHHHHHHHHTTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH--------cC-CCEEEE-C-CCccHHHHHHHHhCCC
Confidence            588999999 7999999999999999999999986533111000        00 001111 1 1123322221      


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ..|+|+.+..  .+   . -...++ .|+++..++.++-
T Consensus       209 ~~D~vi~~~g--~~---~-~~~~~~-~l~~~G~iv~~g~  240 (327)
T 1qor_A          209 KVRVVYDSVG--RD---T-WERSLD-CLQRRGLMVSFGN  240 (327)
T ss_dssp             CEEEEEECSC--GG---G-HHHHHH-TEEEEEEEEECCC
T ss_pred             CceEEEECCc--hH---H-HHHHHH-HhcCCCEEEEEec
Confidence            4799998875  22   1 244677 8999999998874

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=95.73  E-value=0.011  Score=52.82  Aligned_cols=61  Identities=20%  Similarity=0.229  Sum_probs=44.3

Q ss_pred             cCCEEEEEecCchHH-HHHHHhccC-CCEEEE-EcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh---
Q 024297          152 LGKTVFILGFGNIGV-ELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK---  225 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~-~~a~~l~~~-G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---  225 (269)
                      .-.+|||||+|.||+ ..++.++.. +++|.+ +|++..+.                   ...   .+.++++++.+   
T Consensus        24 ~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~~-------------------g~~---~~~~~~~ll~~~~~   81 (330)
T 4ew6_A           24 SPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTVE-------------------GVN---SYTTIEAMLDAEPS   81 (330)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCCT-------------------TSE---EESSHHHHHHHCTT
T ss_pred             CCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhhc-------------------CCC---ccCCHHHHHhCCCC
Confidence            346899999999998 688888765 788665 55543220                   111   24689999876   


Q ss_pred             CCEEEEecC
Q 024297          226 ADVVVCCLS  234 (269)
Q Consensus       226 aDvvv~~lp  234 (269)
                      .|+|+++.|
T Consensus        82 vD~V~i~tp   90 (330)
T 4ew6_A           82 IDAVSLCMP   90 (330)
T ss_dssp             CCEEEECSC
T ss_pred             CCEEEEeCC
Confidence            899999988

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=95.73  E-value=0.0045  Score=56.32  Aligned_cols=97  Identities=19%  Similarity=0.150  Sum_probs=60.7

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCH----HHHHh-
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDI----FEFAS-  224 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l----~ell~-  224 (269)
                      .|++|.|+|.|.+|+.+++.++.+| .+|++++++..+.....        .-| ++..++... ...++    .++.. 
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~--------~lG-a~~vi~~~~~~~~~~~~~v~~~~~g  265 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE--------EIG-ADLTLNRRETSVEERRKAIMDITHG  265 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH--------HTT-CSEEEETTTSCHHHHHHHHHHHTTT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH--------HcC-CcEEEeccccCcchHHHHHHHHhCC
Confidence            5789999999999999999999999 59999998654421110        001 011111000 01122    22222 


Q ss_pred             -hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 -KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 -~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                       ..|+|+.++....    . -...++ .++++..+|.+|-
T Consensus       266 ~g~Dvvid~~g~~~----~-~~~~~~-~l~~~G~iv~~G~  299 (380)
T 1vj0_A          266 RGADFILEATGDSR----A-LLEGSE-LLRRGGFYSVAGV  299 (380)
T ss_dssp             SCEEEEEECSSCTT----H-HHHHHH-HEEEEEEEEECCC
T ss_pred             CCCcEEEECCCCHH----H-HHHHHH-HHhcCCEEEEEec
Confidence             4799999876321    1 134677 8999999998874

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=95.72  E-value=0.004  Score=53.41  Aligned_cols=72  Identities=18%  Similarity=0.160  Sum_probs=46.6

Q ss_pred             EEEEEec-CchHHHHHHHhccC--CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          155 TVFILGF-GNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       155 ~vgIiG~-G~iG~~~a~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      +|.|.|. |.||+.+++.|...  |++|++++|+..+... ..       ..+ +.-...+....+++.++++.+|+|+.
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~-~~-------~~~-~~~~~~D~~d~~~~~~~~~~~d~vi~   71 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQA-LA-------AQG-ITVRQADYGDEAALTSALQGVEKLLL   71 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHH-HH-------HTT-CEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhh-hh-------cCC-CeEEEcCCCCHHHHHHHHhCCCEEEE
Confidence            4789996 99999999999988  9999999987654210 00       000 00011111133467888999999988


Q ss_pred             ecCC
Q 024297          232 CLSL  235 (269)
Q Consensus       232 ~lp~  235 (269)
                      +...
T Consensus        72 ~a~~   75 (286)
T 2zcu_A           72 ISSS   75 (286)
T ss_dssp             CC--
T ss_pred             eCCC
Confidence            7653

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=95.71  E-value=0.013  Score=52.78  Aligned_cols=29  Identities=24%  Similarity=0.413  Sum_probs=24.5

Q ss_pred             EEEEEecCchHHHHHHHhccC---CCEEEEEc
Q 024297          155 TVFILGFGNIGVELAKRLRPF---GVKIIATK  183 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~---G~~V~~~~  183 (269)
                      +|||+|+|.||+.+.+.|...   .++|.+++
T Consensus         3 kVgInG~G~IGr~llR~l~~~~~p~~eivaIn   34 (337)
T 1rm4_O            3 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVIN   34 (337)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSCSEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence            799999999999999998765   45777665

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=95.70  E-value=0.0045  Score=55.71  Aligned_cols=105  Identities=10%  Similarity=-0.000  Sum_probs=61.4

Q ss_pred             cCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCcc-ccccccchhhhccccccccccc-cCCCCCHHHHHhhCCE
Q 024297          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHS-QVSCQSSALAVKNGIIDDLVDE-KGCHEDIFEFASKADV  228 (269)
Q Consensus       152 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~~aDv  228 (269)
                      .+++|.|.| .|.||+.+++.|...|++|++.+|+..+.. ....       ..+.+.....+ ....+++.++++.+|+
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~-------~~~~v~~v~~D~l~d~~~l~~~~~~~d~   76 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQ-------AIPNVTLFQGPLLNNVPLMDTLFEGAHL   76 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHH-------TSTTEEEEESCCTTCHHHHHHHHTTCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHh-------hcCCcEEEECCccCCHHHHHHHHhcCCE
Confidence            367899999 599999999999999999999998765410 0000       00000011111 2233457888999999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCC-CC--cEEEEccCC
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMF-FA--TYVVFMFQG  264 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk-~g--a~lIN~~RG  264 (269)
                      |+.+...............++ .++ .|  ..||+++-.
T Consensus        77 Vi~~a~~~~~~~~~~~~~l~~-aa~~~g~v~~~V~~SS~  114 (352)
T 1xgk_A           77 AFINTTSQAGDEIAIGKDLAD-AAKRAGTIQHYIYSSMP  114 (352)
T ss_dssp             EEECCCSTTSCHHHHHHHHHH-HHHHHSCCSEEEEEECC
T ss_pred             EEEcCCCCCcHHHHHHHHHHH-HHHHcCCccEEEEeCCc
Confidence            997664321111122233444 443 23  367777643

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=95.69  E-value=0.012  Score=52.81  Aligned_cols=30  Identities=30%  Similarity=0.419  Sum_probs=25.9

Q ss_pred             EEEEEecCchHHHHHHHhccC-CCEEEEEcC
Q 024297          155 TVFILGFGNIGVELAKRLRPF-GVKIIATKR  184 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~  184 (269)
                      +|||+|+|.||+.+.+.|... .++|.+++.
T Consensus         3 kVgI~G~G~iG~~l~R~l~~~~~veiv~i~~   33 (330)
T 1gad_O            3 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND   33 (330)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHcCCCeEEEEEcC
Confidence            799999999999999998765 578887764

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.66  E-value=0.009  Score=53.09  Aligned_cols=83  Identities=16%  Similarity=0.003  Sum_probs=51.0

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh--hCC
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KAD  227 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aD  227 (269)
                      ...++|.|.|. |.+|+.+++.|...|.+|++++|+.............  .....+.-...+....+++.++++  .+|
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~--l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d   85 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKA--LEDKGAIIVYGLINEQEAMEKILKEHEID   85 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHH--HHHTTCEEEECCTTCHHHHHHHHHHTTCC
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHH--HHhCCcEEEEeecCCHHHHHHHHhhCCCC
Confidence            34678999997 9999999999999999999999976321110000000  000000111112223456888999  999


Q ss_pred             EEEEecCC
Q 024297          228 VVVCCLSL  235 (269)
Q Consensus       228 vvv~~lp~  235 (269)
                      +|+.+...
T Consensus        86 ~Vi~~a~~   93 (346)
T 3i6i_A           86 IVVSTVGG   93 (346)
T ss_dssp             EEEECCCG
T ss_pred             EEEECCch
Confidence            99988764

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=95.66  E-value=0.0042  Score=55.64  Aligned_cols=93  Identities=17%  Similarity=0.286  Sum_probs=59.8

Q ss_pred             cCCEEEEE-ecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----h
Q 024297          152 LGKTVFIL-GFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  225 (269)
Q Consensus       152 ~g~~vgIi-G~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  225 (269)
                      .|++|.|+ |.|.+|+.+++.++.+|++|++++++..+......        -| .+..+.   ..+++.+.+.     .
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~--------lG-a~~vi~---~~~~~~~~~~~~~~~g  217 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKK--------MG-ADIVLN---HKESLLNQFKTQGIEL  217 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHH--------HT-CSEEEC---TTSCHHHHHHHHTCCC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh--------cC-CcEEEE---CCccHHHHHHHhCCCC
Confidence            68999999 79999999999999999999999986543211100        00 011111   1123444333     3


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      .|+|+.++.. +.   .+ ...++ .++++..+|.++
T Consensus       218 ~Dvv~d~~g~-~~---~~-~~~~~-~l~~~G~iv~~~  248 (346)
T 3fbg_A          218 VDYVFCTFNT-DM---YY-DDMIQ-LVKPRGHIATIV  248 (346)
T ss_dssp             EEEEEESSCH-HH---HH-HHHHH-HEEEEEEEEESS
T ss_pred             ccEEEECCCc-hH---HH-HHHHH-HhccCCEEEEEC
Confidence            7999888652 11   11 34567 899999888875

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=95.66  E-value=0.0065  Score=54.31  Aligned_cols=94  Identities=19%  Similarity=0.200  Sum_probs=61.2

Q ss_pred             cCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHH----HH--h
Q 024297          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE----FA--S  224 (269)
Q Consensus       152 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll--~  224 (269)
                      .|++|.|+|. |.+|+.+++.++.+|++|++++++..+......        -| .+...+ . ...++.+    +.  .
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~--------~g-a~~~~d-~-~~~~~~~~~~~~~~~~  234 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA--------LG-ADETVN-Y-THPDWPKEVRRLTGGK  234 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH--------HT-CSEEEE-T-TSTTHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh--------cC-CCEEEc-C-CcccHHHHHHHHhCCC
Confidence            5789999999 999999999999999999999986543211100        01 011111 1 1123322    22  2


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ..|+|+.+.. . +   . -...++ .|+++..++.++.
T Consensus       235 ~~d~vi~~~g-~-~---~-~~~~~~-~l~~~G~~v~~g~  266 (343)
T 2eih_A          235 GADKVVDHTG-A-L---Y-FEGVIK-ATANGGRIAIAGA  266 (343)
T ss_dssp             CEEEEEESSC-S-S---S-HHHHHH-HEEEEEEEEESSC
T ss_pred             CceEEEECCC-H-H---H-HHHHHH-hhccCCEEEEEec
Confidence            5799998875 2 2   1 244677 8999999998874

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=95.66  E-value=0.0042  Score=55.54  Aligned_cols=100  Identities=14%  Similarity=0.113  Sum_probs=56.2

Q ss_pred             CEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      .+|+|||.|++|..++..+...+.  +|..+|....+.....   .++  .+.  ........-..+-.+.++.||+|++
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~---~dl--~~~--~~~~~~~~v~~~~~~a~~~aDvVii   78 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDA---LDL--EDA--QAFTAPKKIYSGEYSDCKDADLVVI   78 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHH---HHH--HGG--GGGSCCCEEEECCGGGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHH---HHH--HHH--HHhcCCeEEEECCHHHhCCCCEEEE
Confidence            689999999999999999886665  8999998643311000   000  000  0000000000123566899999999


Q ss_pred             ecCCCccccCc-------CCH-------HHHhhhCCCCcEEEEcc
Q 024297          232 CLSLNKQTVKL-------CSS-------SLSSKSMFFATYVVFMF  262 (269)
Q Consensus       232 ~lp~t~~t~~l-------i~~-------~~l~~~mk~ga~lIN~~  262 (269)
                      +.+.. ...+.       .|.       +.+. ...|++++||++
T Consensus        79 ~ag~~-~~~g~~R~dl~~~n~~i~~~i~~~i~-~~~p~a~iiv~t  121 (318)
T 1ez4_A           79 TAGAP-QKPGESRLDLVNKNLNILSSIVKPVV-DSGFDGIFLVAA  121 (318)
T ss_dssp             CCCC-----------CHHHHHHHHHHHHHHHH-HTTCCSEEEECS
T ss_pred             CCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHH-HhCCCeEEEEeC
Confidence            98743 22211       011       1233 347899999874

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=95.66  E-value=0.0037  Score=55.80  Aligned_cols=96  Identities=15%  Similarity=0.171  Sum_probs=61.1

Q ss_pred             cCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----h
Q 024297          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  225 (269)
Q Consensus       152 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  225 (269)
                      .|++|.|+|. |.+|+.+++.++..|++|++++++..+.......       -| .....+ .....++.+.+.     .
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~-------~g-~~~~~d-~~~~~~~~~~~~~~~~~~  225 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTK-------FG-FDDAFN-YKEESDLTAALKRCFPNG  225 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT-------SC-CSEEEE-TTSCSCSHHHHHHHCTTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------cC-CceEEe-cCCHHHHHHHHHHHhCCC
Confidence            5789999997 9999999999999999999999865431111000       01 011111 111123433333     4


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      .|+|+.+... +    . -...+. .++++..++.+|-
T Consensus       226 ~d~vi~~~g~-~----~-~~~~~~-~l~~~G~~v~~G~  256 (345)
T 2j3h_A          226 IDIYFENVGG-K----M-LDAVLV-NMNMHGRIAVCGM  256 (345)
T ss_dssp             EEEEEESSCH-H----H-HHHHHT-TEEEEEEEEECCC
T ss_pred             CcEEEECCCH-H----H-HHHHHH-HHhcCCEEEEEcc
Confidence            7999988752 1    1 244677 8899999998863

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=95.65  E-value=0.012  Score=53.94  Aligned_cols=73  Identities=18%  Similarity=0.181  Sum_probs=48.1

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      ....+++|+|+|-|..|+.+++.++.+|++|++++ +........   .     +.. ......+.+.+.+.++++++|+
T Consensus        20 ~mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~---a-----d~~-~~~~~~~~d~~~l~~~a~~~d~   89 (403)
T 3k5i_A           20 HMWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADNSPAKQI---S-----AHD-GHVTGSFKEREAVRQLAKTCDV   89 (403)
T ss_dssp             -CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STTCTTGGG---C-----CSS-CCEESCTTCHHHHHHHHTTCSE
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCCCcHHHh---c-----ccc-ceeecCCCCHHHHHHHHHhCCE
Confidence            33568999999999999999999999999999999 543311110   0     000 0011112233457788899998


Q ss_pred             EEE
Q 024297          229 VVC  231 (269)
Q Consensus       229 vv~  231 (269)
                      |+.
T Consensus        90 i~~   92 (403)
T 3k5i_A           90 VTA   92 (403)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.64  E-value=0.0056  Score=55.98  Aligned_cols=100  Identities=18%  Similarity=0.148  Sum_probs=62.1

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCC----HHHHHh-
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED----IFEFAS-  224 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~ell~-  224 (269)
                      -.|.+|.|+|.|.+|..+++.++.+|+ +|++++++..+.....        .-| + +.++ ....+.    +.++.. 
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~--------~lG-a-~~i~-~~~~~~~~~~~~~~~~g  252 (398)
T 2dph_A          184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS--------DAG-F-ETID-LRNSAPLRDQIDQILGK  252 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH--------TTT-C-EEEE-TTSSSCHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH--------HcC-C-cEEc-CCCcchHHHHHHHHhCC
Confidence            357899999999999999999999999 9999998654421110        011 0 1111 111111    222222 


Q ss_pred             -hCCEEEEecCCCcc----------ccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 -KADVVVCCLSLNKQ----------TVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 -~aDvvv~~lp~t~~----------t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                       ..|+|+-++.....          ....+ .+.++ .++++..++.+|-
T Consensus       253 ~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~-~~~~~-~l~~gG~iv~~G~  300 (398)
T 2dph_A          253 PEVDCGVDAVGFEAHGLGDEANTETPNGAL-NSLFD-VVRAGGAIGIPGI  300 (398)
T ss_dssp             SCEEEEEECSCTTCBCSGGGTTSBCTTHHH-HHHHH-HEEEEEEEECCSC
T ss_pred             CCCCEEEECCCCccccccccccccccHHHH-HHHHH-HHhcCCEEEEecc
Confidence             48999999863310          00012 34677 8999999988874

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=95.63  E-value=0.011  Score=54.00  Aligned_cols=99  Identities=19%  Similarity=0.240  Sum_probs=61.4

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH----h--
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA----S--  224 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell----~--  224 (269)
                      .|.+|.|+|.|.+|..+++.++.+|+ +|++++++..+.....        .-| + +.+. ....+++.+.+    .  
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~--------~lG-a-~~i~-~~~~~~~~~~v~~~t~g~  253 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK--------AQG-F-EIAD-LSLDTPLHEQIAALLGEP  253 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH--------HTT-C-EEEE-TTSSSCHHHHHHHHHSSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHH--------HcC-C-cEEc-cCCcchHHHHHHHHhCCC
Confidence            57899999999999999999999999 7999987654421110        001 0 1111 11112233322    2  


Q ss_pred             hCCEEEEecCCCcccc-----------CcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 KADVVVCCLSLNKQTV-----------KLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~-----------~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ..|+|+-++.......           ..+ .+.++ .++++..++.+|-
T Consensus       254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~-~~~~~-~l~~~G~iv~~G~  301 (398)
T 1kol_A          254 EVDCAVDAVGFEARGHGHEGAKHEAPATVL-NSLMQ-VTRVAGKIGIPGL  301 (398)
T ss_dssp             CEEEEEECCCTTCBCSSTTGGGSBCTTHHH-HHHHH-HEEEEEEEEECSC
T ss_pred             CCCEEEECCCCcccccccccccccchHHHH-HHHHH-HHhcCCEEEEecc
Confidence            4799999986431000           012 34677 8999999888873

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=95.63  E-value=0.017  Score=48.14  Aligned_cols=37  Identities=27%  Similarity=0.236  Sum_probs=32.0

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      .+.+|++.|.|. |.||+++|+.|...|++|++.+|+.
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   40 (223)
T 3uce_A            3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQT   40 (223)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGG
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCc
Confidence            367899999995 7899999999999999999999864

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=95.61  E-value=0.01  Score=51.29  Aligned_cols=44  Identities=25%  Similarity=0.252  Sum_probs=34.3

Q ss_pred             CCCCccccccCCEEEEEec-Cc--hHHHHHHHhccCCCEEEEEcCCC
Q 024297          143 LGVPTGETLLGKTVFILGF-GN--IGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       143 w~~~~~~~l~g~~vgIiG~-G~--iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      |.......+.||++.|.|. |.  ||+++|+.|...|++|++.+|+.
T Consensus        16 ~~~~~M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           16 PRGSHMGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             ------CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CCCCcccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            3334456789999999996 44  99999999999999999999876

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=95.61  E-value=0.0061  Score=54.82  Aligned_cols=94  Identities=16%  Similarity=0.126  Sum_probs=60.3

Q ss_pred             cCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh------
Q 024297          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS------  224 (269)
Q Consensus       152 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~------  224 (269)
                      .|++|.|+| .|.||+.+++.++..|++|++++++..+.... ..   +    | .+...+ . ...++.+.+.      
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~---~----g-~~~~~~-~-~~~~~~~~~~~~~~~~  230 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMA-EK---L----G-AAAGFN-Y-KKEDFSEATLKFTKGA  230 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HH---H----T-CSEEEE-T-TTSCHHHHHHHHTTTS
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HH---c----C-CcEEEe-c-CChHHHHHHHHHhcCC
Confidence            578999999 79999999999999999999999865432111 00   0    0 000111 1 1123322221      


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ..|+++.+... +    . -...++ .|+++..++.++-
T Consensus       231 ~~d~vi~~~G~-~----~-~~~~~~-~l~~~G~iv~~G~  262 (354)
T 2j8z_A          231 GVNLILDCIGG-S----Y-WEKNVN-CLALDGRWVLYGL  262 (354)
T ss_dssp             CEEEEEESSCG-G----G-HHHHHH-HEEEEEEEEECCC
T ss_pred             CceEEEECCCc-h----H-HHHHHH-hccCCCEEEEEec
Confidence            47999988752 1    1 234677 8999999998874

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=95.60  E-value=0.007  Score=56.31  Aligned_cols=73  Identities=15%  Similarity=0.118  Sum_probs=45.6

Q ss_pred             CEEEEEecCchHHHHHHHhccC-CCEEE-EEcCCCCCccccccccchhhhccccccccccccCCCC----CHHHHHh--h
Q 024297          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE----DIFEFAS--K  225 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~ell~--~  225 (269)
                      .+|||||+|.||+..++.+... |++|. ++|++..+.......   +. ..|     ......+.    +++++++  +
T Consensus        21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~---~~-~~g-----~~~~~~~~~~~~~~~~ll~~~~   91 (444)
T 2ixa_A           21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEI---LK-KNG-----KKPAKVFGNGNDDYKNMLKDKN   91 (444)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHH---HH-HTT-----CCCCEEECSSTTTHHHHTTCTT
T ss_pred             ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHH---HH-hcC-----CCCCceeccCCCCHHHHhcCCC
Confidence            5899999999999999988875 78865 566654331110000   00 000     00000134    8999997  5


Q ss_pred             CCEEEEecCC
Q 024297          226 ADVVVCCLSL  235 (269)
Q Consensus       226 aDvvv~~lp~  235 (269)
                      .|+|++++|.
T Consensus        92 vD~V~i~tp~  101 (444)
T 2ixa_A           92 IDAVFVSSPW  101 (444)
T ss_dssp             CCEEEECCCG
T ss_pred             CCEEEEcCCc
Confidence            8999999883

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.60  E-value=0.011  Score=48.80  Aligned_cols=97  Identities=22%  Similarity=0.217  Sum_probs=57.3

Q ss_pred             CEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      ++|.|.|. |.||+.+++.|...|.+|++++|+..+.....        ..+ +.-...+....++  +.+..+|+|+.+
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--------~~~-~~~~~~D~~d~~~--~~~~~~d~vi~~   69 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRL--------GAT-VATLVKEPLVLTE--ADLDSVDAVVDA   69 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHT--------CTT-SEEEECCGGGCCH--HHHTTCSEEEEC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccccc--------CCC-ceEEecccccccH--hhcccCCEEEEC
Confidence            36899997 99999999999999999999998754311000        000 0001111111122  778899999998


Q ss_pred             cCCC--ccc---cCcCCHHHHhhhCC-CCcEEEEcc
Q 024297          233 LSLN--KQT---VKLCSSSLSSKSMF-FATYVVFMF  262 (269)
Q Consensus       233 lp~t--~~t---~~li~~~~l~~~mk-~ga~lIN~~  262 (269)
                      ....  +..   .-......++ .|+ .+..+|+++
T Consensus        70 ag~~~~~~~~~~n~~~~~~l~~-a~~~~~~~~v~~S  104 (224)
T 3h2s_A           70 LSVPWGSGRGYLHLDFATHLVS-LLRNSDTLAVFIL  104 (224)
T ss_dssp             CCCCTTSSCTHHHHHHHHHHHH-TCTTCCCEEEEEC
T ss_pred             CccCCCcchhhHHHHHHHHHHH-HHHHcCCcEEEEe
Confidence            7653  111   0011233455 554 346777775

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=95.60  E-value=0.0081  Score=54.96  Aligned_cols=72  Identities=17%  Similarity=0.098  Sum_probs=47.2

Q ss_pred             CCEEEEEecCc---hHHHHHHHhccCC-CEEEE--EcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh-
Q 024297          153 GKTVFILGFGN---IGVELAKRLRPFG-VKIIA--TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK-  225 (269)
Q Consensus       153 g~~vgIiG~G~---iG~~~a~~l~~~G-~~V~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-  225 (269)
                      -.+|||||+|.   ||+..+..++..+ ++|.+  +|++..+......       ..|     ......+.++++++.+ 
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~-------~~g-----~~~~~~~~~~~~ll~~~   79 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGE-------QLG-----VDSERCYADYLSMFEQE   79 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHH-------HTT-----CCGGGBCSSHHHHHHHH
T ss_pred             cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHH-------HhC-----CCcceeeCCHHHHHhcc
Confidence            45899999999   9999988877664 78774  5776543211000       000     0000124789999986 


Q ss_pred             ------CCEEEEecCCC
Q 024297          226 ------ADVVVCCLSLN  236 (269)
Q Consensus       226 ------aDvvv~~lp~t  236 (269)
                            .|+|+++.|..
T Consensus        80 ~~~~~~vD~V~i~tp~~   96 (398)
T 3dty_A           80 ARRADGIQAVSIATPNG   96 (398)
T ss_dssp             TTCTTCCSEEEEESCGG
T ss_pred             cccCCCCCEEEECCCcH
Confidence                  89999998843

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=95.57  E-value=0.0036  Score=58.70  Aligned_cols=40  Identities=18%  Similarity=0.253  Sum_probs=36.2

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      ..++.|++|.|+|.|.+|...++.|...|++|+++++...
T Consensus         7 ~~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~   46 (457)
T 1pjq_A            7 FCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFI   46 (457)
T ss_dssp             EECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCC
T ss_pred             EEECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCC
Confidence            3578999999999999999999999999999999997543

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=95.56  E-value=0.016  Score=52.23  Aligned_cols=31  Identities=29%  Similarity=0.341  Sum_probs=26.3

Q ss_pred             CEEEEEecCchHHHHHHHhccC-CCEEEEEcC
Q 024297          154 KTVFILGFGNIGVELAKRLRPF-GVKIIATKR  184 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~  184 (269)
                      .+|||+|+|.||+.+++.+... +++|.+++.
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d   35 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIND   35 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecC
Confidence            3899999999999999998754 689887764

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.55  E-value=0.015  Score=52.27  Aligned_cols=31  Identities=26%  Similarity=0.409  Sum_probs=26.1

Q ss_pred             CEEEEEecCchHHHHHHHhccC---CCEEEEEcC
Q 024297          154 KTVFILGFGNIGVELAKRLRPF---GVKIIATKR  184 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~---G~~V~~~~~  184 (269)
                      .+|||+|+|.||+.+.+.|...   .++|.+++.
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~   34 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAIND   34 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEc
Confidence            3799999999999999998765   578887764

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=95.54  E-value=0.022  Score=49.95  Aligned_cols=61  Identities=20%  Similarity=0.207  Sum_probs=42.7

Q ss_pred             CEEEEEecCchHHHHHHHhcc----CCCEEEE-EcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh--hC
Q 024297          154 KTVFILGFGNIGVELAKRLRP----FGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KA  226 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~----~G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~a  226 (269)
                      .+|||||+|.||+..++.+..    -++++.+ ++++...  .               ....    ...++++++.  +.
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a--~---------------~~g~----~~~~~~ell~~~~v   66 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG--S---------------LDEV----RQISLEDALRSQEI   66 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC--E---------------ETTE----EBCCHHHHHHCSSE
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHH--H---------------HcCC----CCCCHHHHhcCCCC
Confidence            489999999999999998876    3677664 4443211  0               0001    1368999997  68


Q ss_pred             CEEEEecCC
Q 024297          227 DVVVCCLSL  235 (269)
Q Consensus       227 Dvvv~~lp~  235 (269)
                      |+|+++.|.
T Consensus        67 D~V~i~tp~   75 (294)
T 1lc0_A           67 DVAYICSES   75 (294)
T ss_dssp             EEEEECSCG
T ss_pred             CEEEEeCCc
Confidence            999999884

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=95.53  E-value=0.0099  Score=51.21  Aligned_cols=74  Identities=15%  Similarity=0.080  Sum_probs=49.9

Q ss_pred             CEEEEEe-cCchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILG-FGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      ++|.|.| .|.||+.+++.|... |.+|.+.+|+..+.....         ...+.-...+....+++.++++.+|+|+.
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~---------~~~v~~~~~D~~d~~~l~~~~~~~d~vi~   71 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDW---------RGKVSVRQLDYFNQESMVEAFKGMDTVVF   71 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGG---------BTTBEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhh---------hCCCEEEEcCCCCHHHHHHHHhCCCEEEE
Confidence            3688999 599999999999987 999999998765421100         00001111122234568889999999998


Q ss_pred             ecCCC
Q 024297          232 CLSLN  236 (269)
Q Consensus       232 ~lp~t  236 (269)
                      +.+..
T Consensus        72 ~a~~~   76 (289)
T 3e48_A           72 IPSII   76 (289)
T ss_dssp             CCCCC
T ss_pred             eCCCC
Confidence            87643

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=95.52  E-value=0.0067  Score=54.31  Aligned_cols=66  Identities=18%  Similarity=0.177  Sum_probs=46.0

Q ss_pred             CCEEEEEecC-chHHHHHHHhccC--CCEE-EEEcCCCCCccccccccchhhhccccccccccccC---CCCCHHHHHh-
Q 024297          153 GKTVFILGFG-NIGVELAKRLRPF--GVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS-  224 (269)
Q Consensus       153 g~~vgIiG~G-~iG~~~a~~l~~~--G~~V-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~-  224 (269)
                      -.+|||||+| .+|+..++.++..  +++| -++|++..+..                 .....++   .+.++++++. 
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~-----------------~~a~~~~~~~~~~~~~~ll~~   80 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAE-----------------EFAKMVGNPAVFDSYEELLES   80 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHH-----------------HHHHHHSSCEEESCHHHHHHS
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHH-----------------HHHHHhCCCcccCCHHHHhcC
Confidence            3589999999 8999999988876  5776 45666543311                 1111111   2478999997 


Q ss_pred             -hCCEEEEecCC
Q 024297          225 -KADVVVCCLSL  235 (269)
Q Consensus       225 -~aDvvv~~lp~  235 (269)
                       +.|+|+++.|.
T Consensus        81 ~~vD~V~i~tp~   92 (340)
T 1zh8_A           81 GLVDAVDLTLPV   92 (340)
T ss_dssp             SCCSEEEECCCG
T ss_pred             CCCCEEEEeCCc
Confidence             58999999873

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=95.52  E-value=0.0051  Score=55.77  Aligned_cols=39  Identities=31%  Similarity=0.446  Sum_probs=34.8

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~  186 (269)
                      ...|.+++|.|+|.|.+|.++|+.|...|. +++.+|+..
T Consensus       113 q~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          113 QDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             HHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             HHHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            357899999999999999999999999998 799998643

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.51  E-value=0.0074  Score=54.31  Aligned_cols=98  Identities=18%  Similarity=0.170  Sum_probs=61.0

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCCCccccccccchhhhccccccccccccC---CCCCHHHHHh--
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--  224 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--  224 (269)
                      -.|++|.|+|.|.+|+.+++.++.+|++ |++++++..+.......        +  +.......   ...++.+.+.  
T Consensus       178 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l--------~--~~~~~~~~~~~~~~~~~~~v~~~  247 (363)
T 3m6i_A          178 RLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI--------C--PEVVTHKVERLSAEESAKKIVES  247 (363)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH--------C--TTCEEEECCSCCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh--------c--hhcccccccccchHHHHHHHHHH
Confidence            3578999999999999999999999997 99998765442111000        0  00000000   0112222221  


Q ss_pred             ----hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          225 ----KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       225 ----~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                          ..|+++-++... .   .+ ...++ .++++..++.+|-+
T Consensus       248 t~g~g~Dvvid~~g~~-~---~~-~~~~~-~l~~~G~iv~~G~~  285 (363)
T 3m6i_A          248 FGGIEPAVALECTGVE-S---SI-AAAIW-AVKFGGKVFVIGVG  285 (363)
T ss_dssp             TSSCCCSEEEECSCCH-H---HH-HHHHH-HSCTTCEEEECCCC
T ss_pred             hCCCCCCEEEECCCCh-H---HH-HHHHH-HhcCCCEEEEEccC
Confidence                479999987521 1   11 34677 89999999998743

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=95.50  E-value=0.0041  Score=55.52  Aligned_cols=93  Identities=14%  Similarity=0.129  Sum_probs=56.1

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH-HhhCCEEEE
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKADVVVC  231 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDvvv~  231 (269)
                      .+++.|+|+|.+|+.+++.|...|. |++++++++...  ... .+..+-.|       +....+.|+++ +++||.|++
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~--~~~-~~~~~i~g-------d~~~~~~L~~a~i~~a~~vi~  183 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK--VLR-SGANFVHG-------DPTRVSDLEKANVRGARAVIV  183 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH--HHH-TTCEEEES-------CTTSHHHHHHTCSTTEEEEEE
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh--HHh-CCcEEEEe-------CCCCHHHHHhcChhhccEEEE
Confidence            5689999999999999999999999 999998764421  100 00101111       11122335555 778999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEE
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVV  259 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lI  259 (269)
                      +.+...  .++.-....+ .+.+...+|
T Consensus       184 ~~~~d~--~n~~~~~~ar-~~~~~~~ii  208 (336)
T 1lnq_A          184 DLESDS--ETIHCILGIR-KIDESVRII  208 (336)
T ss_dssp             CCSSHH--HHHHHHHHHH-TTCTTSEEE
T ss_pred             cCCccH--HHHHHHHHHH-HHCCCCeEE
Confidence            987432  2333333445 566654433

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=95.49  E-value=0.014  Score=51.89  Aligned_cols=73  Identities=19%  Similarity=0.226  Sum_probs=44.9

Q ss_pred             EEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhcccccccccc-ccC--CCCCHHHHHhhCCEEE
Q 024297          155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKG--CHEDIFEFASKADVVV  230 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~l~ell~~aDvvv  230 (269)
                      +|+|||.|.+|..++..+...|. +|..+|++..+.....   .++.  +.  ..... ...  ...+. +.++.||+|+
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~---~dl~--~~--~~~~~~~~~i~~t~d~-~a~~~aD~Vi   72 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEA---LDLA--HA--AAELGVDIRISGSNSY-EDMRGSDIVL   72 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHH---HHHH--HH--HHHHTCCCCEEEESCG-GGGTTCSEEE
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHH---HHHH--Hh--hhhcCCCeEEEECCCH-HHhCCCCEEE
Confidence            58999999999999998876676 7999998754321100   0000  00  00000 000  11344 5789999999


Q ss_pred             EecCC
Q 024297          231 CCLSL  235 (269)
Q Consensus       231 ~~lp~  235 (269)
                      ++.+.
T Consensus        73 ~~ag~   77 (308)
T 2d4a_B           73 VTAGI   77 (308)
T ss_dssp             ECCSC
T ss_pred             EeCCC
Confidence            99774

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=95.49  E-value=0.007  Score=53.78  Aligned_cols=94  Identities=17%  Similarity=0.178  Sum_probs=60.3

Q ss_pred             cCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHH----HHHh--
Q 024297          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF----EFAS--  224 (269)
Q Consensus       152 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----ell~--  224 (269)
                      .|++|.|+|. |.||+.+++.++..|++|++++++..+..... .   +    | .+...+ . ...++.    ++..  
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~-~---~----g-~~~~~d-~-~~~~~~~~i~~~~~~~  213 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETAR-K---L----G-CHHTIN-Y-STQDFAEVVREITGGK  213 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-H---H----T-CSEEEE-T-TTSCHHHHHHHHHTTC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-H---c----C-CCEEEE-C-CCHHHHHHHHHHhCCC
Confidence            5789999995 99999999999999999999998653311100 0   0    0 001111 1 112222    2221  


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ..|+|+.+...     .. -...++ .++++..+|.++-
T Consensus       214 ~~d~vi~~~g~-----~~-~~~~~~-~l~~~G~iv~~g~  245 (333)
T 1wly_A          214 GVDVVYDSIGK-----DT-LQKSLD-CLRPRGMCAAYGH  245 (333)
T ss_dssp             CEEEEEECSCT-----TT-HHHHHH-TEEEEEEEEECCC
T ss_pred             CCeEEEECCcH-----HH-HHHHHH-hhccCCEEEEEec
Confidence            47999988753     11 245677 8999999998874

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=95.49  E-value=0.0078  Score=52.08  Aligned_cols=87  Identities=22%  Similarity=0.213  Sum_probs=53.7

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEE-EEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      -...+|+++|+|+||+.+++.  . ++++. +|+   ++.                 .++  ......++++++.++|+|
T Consensus        10 ~~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k~-----------------gel--gv~a~~d~d~lla~pD~V   64 (253)
T 1j5p_A           10 HHHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RIS-----------------KDI--PGVVRLDEFQVPSDVSTV   64 (253)
T ss_dssp             -CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SSC-----------------CCC--SSSEECSSCCCCTTCCEE
T ss_pred             cccceEEEECcCHHHHHHHhc--C-CcEEEEEEe---ccc-----------------ccc--CceeeCCHHHHhhCCCEE
Confidence            356799999999999999998  4 88754 444   221                 011  000124566777788988


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCcc
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVS  268 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vd  268 (269)
                      +=|.+.     .-+.+.... .|+.|.-+|-++=|.+.|
T Consensus        65 Ve~A~~-----~av~e~~~~-iL~aG~dvv~~S~gaLad   97 (253)
T 1j5p_A           65 VECASP-----EAVKEYSLQ-ILKNPVNYIIISTSAFAD   97 (253)
T ss_dssp             EECSCH-----HHHHHHHHH-HTTSSSEEEECCGGGGGS
T ss_pred             EECCCH-----HHHHHHHHH-HHHCCCCEEEcChhhhcC
Confidence            877631     122222334 778888888777665543

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=95.48  E-value=0.027  Score=48.52  Aligned_cols=61  Identities=21%  Similarity=0.265  Sum_probs=44.9

Q ss_pred             CEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh--CCEEE
Q 024297          154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVV  230 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDvvv  230 (269)
                      ++|.|.|. |.||+.+++.|. .|++|++++|+....                    ..+....+++.+++++  +|+|+
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~--------------------~~D~~d~~~~~~~~~~~~~d~vi   59 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSKEF--------------------CGDFSNPKGVAETVRKLRPDVIV   59 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCSSS--------------------CCCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccccc--------------------cccCCCHHHHHHHHHhcCCCEEE
Confidence            37899996 999999999999 899999999865210                    0111123457788876  99988


Q ss_pred             EecCC
Q 024297          231 CCLSL  235 (269)
Q Consensus       231 ~~lp~  235 (269)
                      .+...
T Consensus        60 h~a~~   64 (299)
T 1n2s_A           60 NAAAH   64 (299)
T ss_dssp             ECCCC
T ss_pred             ECccc
Confidence            87654

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=95.48  E-value=0.011  Score=53.19  Aligned_cols=30  Identities=27%  Similarity=0.416  Sum_probs=26.3

Q ss_pred             EEEEEecCchHHHHHHHhccC-CCEEEEEcC
Q 024297          155 TVFILGFGNIGVELAKRLRPF-GVKIIATKR  184 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~  184 (269)
                      +|||+|+|.||+.+.+.|... .++|.+++.
T Consensus         3 kVgI~G~G~iGr~l~R~l~~~~~veivain~   33 (334)
T 3cmc_O            3 KVGINGFGRIGRNVFRAALKNPDIEVVAVND   33 (334)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhCCCCeEEEEEeC
Confidence            799999999999999998876 678887764

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=95.47  E-value=0.018  Score=50.16  Aligned_cols=66  Identities=14%  Similarity=0.158  Sum_probs=41.3

Q ss_pred             CCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh--CCEE
Q 024297          153 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVV  229 (269)
Q Consensus       153 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDvv  229 (269)
                      +++|.|.|. |.||+.+++.|...|++|++++|+.... . .               ...+....+++.++++.  .|+|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~-~---------------~~~Dl~d~~~~~~~~~~~~~d~v   64 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARP-K-F---------------EQVNLLDSNAVHHIIHDFQPHVI   64 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CHHHHHHHCCSEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCC-C-e---------------EEecCCCHHHHHHHHHhhCCCEE
Confidence            579999996 9999999999999999999999764320 0 0               00111123567777775  8999


Q ss_pred             EEecCC
Q 024297          230 VCCLSL  235 (269)
Q Consensus       230 v~~lp~  235 (269)
                      +.+...
T Consensus        65 ih~A~~   70 (315)
T 2ydy_A           65 VHCAAE   70 (315)
T ss_dssp             EECC--
T ss_pred             EECCcc
Confidence            887653

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=95.47  E-value=0.0099  Score=53.72  Aligned_cols=31  Identities=26%  Similarity=0.523  Sum_probs=26.3

Q ss_pred             CEEEEEecCchHHHHHHHhccC-CCEEEEEcC
Q 024297          154 KTVFILGFGNIGVELAKRLRPF-GVKIIATKR  184 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~  184 (269)
                      .+|||+|+|.||+.+++.+... +++|.+++.
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d   34 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTK   34 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEec
Confidence            3899999999999999998765 688777754

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=95.46  E-value=0.017  Score=50.87  Aligned_cols=64  Identities=17%  Similarity=0.231  Sum_probs=46.2

Q ss_pred             CCEEEEEec-CchHHHHHHHhccCCCEEE-EEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh--hCCE
Q 024297          153 GKTVFILGF-GNIGVELAKRLRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV  228 (269)
Q Consensus       153 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDv  228 (269)
                      ..+|+|+|+ |++|+.+++.++..|++++ .+++......  .              ...   ..+.+++++..  ..|+
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~~--i--------------~G~---~vy~sl~el~~~~~~Dv   67 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGME--V--------------LGV---PVYDTVKEAVAHHEVDA   67 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE--E--------------TTE---EEESSHHHHHHHSCCSE
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCce--E--------------CCE---EeeCCHHHHhhcCCCCE
Confidence            468999998 9999999999998899844 6665431100  0              001   12467889888  8999


Q ss_pred             EEEecCC
Q 024297          229 VVCCLSL  235 (269)
Q Consensus       229 vv~~lp~  235 (269)
                      +++++|.
T Consensus        68 ~Ii~vp~   74 (288)
T 1oi7_A           68 SIIFVPA   74 (288)
T ss_dssp             EEECCCH
T ss_pred             EEEecCH
Confidence            9999983

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.46  E-value=0.024  Score=51.05  Aligned_cols=76  Identities=18%  Similarity=0.111  Sum_probs=51.3

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      ..+++|.|.|. |.||+.+++.|...|++|++++|+..+......        .+ +.-...+....+++.++++.+|+|
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~-v~~~~~Dl~d~~~~~~~~~~~d~V   97 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDM--------FC-DEFHLVDLRVMENCLKVTEGVDHV   97 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGG--------TC-SEEEECCTTSHHHHHHHHTTCSEE
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhcc--------CC-ceEEECCCCCHHHHHHHhCCCCEE
Confidence            35789999997 999999999999999999999987654211000        00 000111111234577888999999


Q ss_pred             EEecCC
Q 024297          230 VCCLSL  235 (269)
Q Consensus       230 v~~lp~  235 (269)
                      +.+...
T Consensus        98 ih~A~~  103 (379)
T 2c5a_A           98 FNLAAD  103 (379)
T ss_dssp             EECCCC
T ss_pred             EECcee
Confidence            887653

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=95.45  E-value=0.012  Score=51.53  Aligned_cols=82  Identities=18%  Similarity=0.225  Sum_probs=50.2

Q ss_pred             CCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCC-CCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          153 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW-ASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       153 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      .++|.|.|. |.+|+.+++.|...|++|.+.+|+. ........... ..+....+.-...+....+++.++++.+|+|+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l-~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi   82 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLR-EEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVI   82 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHH-HHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHH-HHhhcCCcEEEEecCCCHHHHHHHHcCCCEEE
Confidence            468999995 9999999999999999999999875 21100000000 00000001111111223456888999999999


Q ss_pred             EecCC
Q 024297          231 CCLSL  235 (269)
Q Consensus       231 ~~lp~  235 (269)
                      .+...
T Consensus        83 ~~a~~   87 (321)
T 3c1o_A           83 SALPF   87 (321)
T ss_dssp             ECCCG
T ss_pred             ECCCc
Confidence            88763

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=95.44  E-value=0.017  Score=51.24  Aligned_cols=88  Identities=16%  Similarity=0.118  Sum_probs=53.3

Q ss_pred             ccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccc-hhhh-ccccccccccccCCCCCHHHHHhh
Q 024297          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSS-ALAV-KNGIIDDLVDEKGCHEDIFEFASK  225 (269)
Q Consensus       149 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~l~ell~~  225 (269)
                      .++.+++|.|.|. |.||+.+++.|...|++|++++|+............ .+.- ....+.-...+....+++.+++..
T Consensus        23 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~  102 (352)
T 1sb8_A           23 LPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAG  102 (352)
T ss_dssp             HHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTT
T ss_pred             cCccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcC
Confidence            3477899999997 999999999999999999999986542111000000 0000 000000011111123457788889


Q ss_pred             CCEEEEecCCC
Q 024297          226 ADVVVCCLSLN  236 (269)
Q Consensus       226 aDvvv~~lp~t  236 (269)
                      +|+|+.+....
T Consensus       103 ~d~vih~A~~~  113 (352)
T 1sb8_A          103 VDYVLHQAALG  113 (352)
T ss_dssp             CSEEEECCSCC
T ss_pred             CCEEEECCccc
Confidence            99999887643

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=95.42  E-value=0.01  Score=53.38  Aligned_cols=95  Identities=9%  Similarity=0.063  Sum_probs=60.6

Q ss_pred             ccCCEEEEEecCchHHHH-HHHh-ccCCCE-EEEEcCCCC---CccccccccchhhhccccccccccccCCCCC---HHH
Q 024297          151 LLGKTVFILGFGNIGVEL-AKRL-RPFGVK-IIATKRSWA---SHSQVSCQSSALAVKNGIIDDLVDEKGCHED---IFE  221 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~-a~~l-~~~G~~-V~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~e  221 (269)
                      ..+.+|.|+|.|.+|..+ ++.+ +.+|++ |++++++..   +.....        .-| ++..  ... ..+   +.+
T Consensus       171 ~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~--------~lG-a~~v--~~~-~~~~~~i~~  238 (357)
T 2b5w_A          171 WDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIE--------ELD-ATYV--DSR-QTPVEDVPD  238 (357)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHH--------HTT-CEEE--ETT-TSCGGGHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHH--------HcC-Cccc--CCC-ccCHHHHHH
Confidence            344899999999999999 9999 999997 999998765   321110        001 0111  111 123   333


Q ss_pred             HHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          222 FASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       222 ll~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +-...|+|+-++... .   . -...++ .++++..++.++-
T Consensus       239 ~~gg~Dvvid~~g~~-~---~-~~~~~~-~l~~~G~iv~~g~  274 (357)
T 2b5w_A          239 VYEQMDFIYEATGFP-K---H-AIQSVQ-ALAPNGVGALLGV  274 (357)
T ss_dssp             HSCCEEEEEECSCCH-H---H-HHHHHH-HEEEEEEEEECCC
T ss_pred             hCCCCCEEEECCCCh-H---H-HHHHHH-HHhcCCEEEEEeC
Confidence            301479999887521 1   1 134677 8999999998874

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.40  E-value=0.017  Score=50.56  Aligned_cols=84  Identities=19%  Similarity=0.162  Sum_probs=52.1

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhh-cccccccc-ccccCCCCCHHHHHhhC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV-KNGIIDDL-VDEKGCHEDIFEFASKA  226 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~l~ell~~a  226 (269)
                      .+.+++|.|.|. |.||+.+++.|...|++|++++|+..+.......   +.- ..+.+.-. ..+.....+++++++..
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~   84 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKR---WDAKYPGRFETAVVEDMLKQGAYDEVIKGA   84 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---HHHHSTTTEEEEECSCTTSTTTTTTTTTTC
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHH---hhccCCCceEEEEecCCcChHHHHHHHcCC
Confidence            467899999997 9999999999999999999999864321000000   000 00000001 11122345677778899


Q ss_pred             CEEEEecCCC
Q 024297          227 DVVVCCLSLN  236 (269)
Q Consensus       227 Dvvv~~lp~t  236 (269)
                      |+|+.+....
T Consensus        85 d~vih~A~~~   94 (342)
T 1y1p_A           85 AGVAHIASVV   94 (342)
T ss_dssp             SEEEECCCCC
T ss_pred             CEEEEeCCCC
Confidence            9998876543

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A

Probab=95.40  E-value=0.12  Score=49.19  Aligned_cols=132  Identities=12%  Similarity=0.078  Sum_probs=89.9

Q ss_pred             CCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhcc---
Q 024297           98 CGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRP---  174 (269)
Q Consensus        98 ~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~---  174 (269)
                      ..|++.|.-      ..-+|=-+++.+++.+|-.                ++.+.+.+|.|.|.|..|-.+|+++..   
T Consensus       249 ~~ipvFnDD------iqGTa~V~lAgllnAlki~----------------gk~l~d~riv~~GAGaAg~gia~ll~~~~~  306 (555)
T 1gq2_A          249 NKYCTFNDD------IQGTASVAVAGLLAALRIT----------------KNRLSDHTVLFQGAGEAALGIANLIVMAMQ  306 (555)
T ss_dssp             TTSEEEETT------THHHHHHHHHHHHHHHHHH----------------TSCGGGCCEEEECCSHHHHHHHHHHHHHHH
T ss_pred             ccCCEecCc------cchHHHHHHHHHHHHHHHh----------------CCChhhcEEEEECCCHHHHHHHHHHHHHHH
Confidence            368888863      2457778899999988863                678999999999999999999999987   


Q ss_pred             -CCC-------EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh--CCEEEEecCCCccccCcCC
Q 024297          175 -FGV-------KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVVCCLSLNKQTVKLCS  244 (269)
Q Consensus       175 -~G~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDvvv~~lp~t~~t~~li~  244 (269)
                       .|.       +|+.+|+..--.....+.      .... ...........+|.++++.  +|+++-+-    ..-+.++
T Consensus       307 ~~G~~~eeA~~~i~~~D~~Gli~~~r~~l------~~~k-~~~A~~~~~~~~L~eav~~vkp~vlIG~S----~~~g~ft  375 (555)
T 1gq2_A          307 KEGVSKEEAIKRIWMVDSKGLIVKGRASL------TPEK-EHFAHEHCEMKNLEDIVKDIKPTVLIGVA----AIGGAFT  375 (555)
T ss_dssp             HHTCCHHHHHTTEEEEETTEECBTTCSSC------CTTG-GGGCBSCCCCCCHHHHHHHHCCSEEEECS----CCTTCSC
T ss_pred             HcCCChHHHhCcEEEEECCCeeeCCCCCc------hHHH-HHHHhhcCCCCCHHHHHhhcCCCEEEEec----CCCCCCC
Confidence             684       699999754321100000      0000 1112211123579999995  99888762    1238999


Q ss_pred             HHHHhhhCC---CCcEEEEccC
Q 024297          245 SSLSSKSMF---FATYVVFMFQ  263 (269)
Q Consensus       245 ~~~l~~~mk---~ga~lIN~~R  263 (269)
                      ++.++ .|.   +..++.=.|.
T Consensus       376 ~evv~-~Ma~~~~~PIIFaLSN  396 (555)
T 1gq2_A          376 QQILQ-DMAAFNKRPIIFALSN  396 (555)
T ss_dssp             HHHHH-HHHHHCSSCEEEECCS
T ss_pred             HHHHH-HHHhcCCCCEEEECCC
Confidence            99999 997   5666665554

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=95.38  E-value=0.0089  Score=52.02  Aligned_cols=47  Identities=21%  Similarity=0.249  Sum_probs=39.2

Q ss_pred             CCCCCccccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          142 KLGVPTGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       142 ~w~~~~~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .|......++.||++.|.|. |.||+++|+.|...|++|++.+|+..+
T Consensus         5 ~~~~~~~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~   52 (291)
T 3rd5_A            5 GWTAADLPSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRK   52 (291)
T ss_dssp             CCCGGGCCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCChhhccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            35544446789999999995 789999999999999999999987543

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=95.38  E-value=0.0061  Score=55.93  Aligned_cols=65  Identities=20%  Similarity=0.170  Sum_probs=43.9

Q ss_pred             CEEEEEecCchHHHHHHHhccC---------CCEEEE-EcCCCCCccccccccchhhhccccccccccccC---CCCCHH
Q 024297          154 KTVFILGFGNIGVELAKRLRPF---------GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIF  220 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~---------G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~  220 (269)
                      -+|||||+|.||+..++.++..         +++|.+ +|++..+..                 ....+++   .+.+++
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~-----------------~~a~~~~~~~~y~d~~   89 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAE-----------------RHAAKLGAEKAYGDWR   89 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHH-----------------HHHHHHTCSEEESSHH
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHH-----------------HHHHHcCCCeEECCHH
Confidence            3899999999999888777643         567665 455443311                 1111122   247899


Q ss_pred             HHHh--hCCEEEEecCC
Q 024297          221 EFAS--KADVVVCCLSL  235 (269)
Q Consensus       221 ell~--~aDvvv~~lp~  235 (269)
                      ++|+  +.|+|+++.|.
T Consensus        90 ~ll~~~~vD~V~I~tp~  106 (412)
T 4gqa_A           90 ELVNDPQVDVVDITSPN  106 (412)
T ss_dssp             HHHHCTTCCEEEECSCG
T ss_pred             HHhcCCCCCEEEECCCc
Confidence            9997  57999999883

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=95.36  E-value=0.023  Score=49.86  Aligned_cols=73  Identities=18%  Similarity=0.126  Sum_probs=47.5

Q ss_pred             CEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      ++|.|.| .|.||+.+++.|...|++|++++|+..+... ..        +..+.-...+....+++.++++.+|+|+.+
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-l~--------~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~   84 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQR-LA--------YLEPECRVAEMLDHAGLERALRGLDGVIFS   84 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGG-GG--------GGCCEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhh-hc--------cCCeEEEEecCCCHHHHHHHHcCCCEEEEC
Confidence            5899999 5999999999999999999999987654211 00        000000111111334577888899999888


Q ss_pred             cCC
Q 024297          233 LSL  235 (269)
Q Consensus       233 lp~  235 (269)
                      ...
T Consensus        85 a~~   87 (342)
T 2x4g_A           85 AGY   87 (342)
T ss_dssp             ---
T ss_pred             Ccc
Confidence            654

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.35  E-value=0.0067  Score=56.93  Aligned_cols=36  Identities=25%  Similarity=0.317  Sum_probs=32.5

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .++|.|+|+|.+|+.+|+.|...|.+|+++|.++..
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~   38 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDR   38 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
Confidence            468999999999999999999999999999986543

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=95.35  E-value=0.032  Score=50.41  Aligned_cols=94  Identities=14%  Similarity=0.052  Sum_probs=58.6

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----  224 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----  224 (269)
                      -.|.+|.|+|. |.+|+.+++.++.+|++|++.. +..+.. ..       -.-| ++..++.  ...++.+.+.     
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~-~~-------~~lG-a~~vi~~--~~~~~~~~v~~~t~g  230 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFD-LA-------KSRG-AEEVFDY--RAPNLAQTIRTYTKN  230 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHH-HH-------HHTT-CSEEEET--TSTTHHHHHHHHTTT
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHH-HH-------HHcC-CcEEEEC--CCchHHHHHHHHccC
Confidence            57899999999 8999999999999999999885 333211 10       0011 0111111  1234443333     


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhC-CCCcEEEEcc
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSM-FFATYVVFMF  262 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~m-k~ga~lIN~~  262 (269)
                      ..|+++-++... .   .+ ...++ .+ +++..++.++
T Consensus       231 ~~d~v~d~~g~~-~---~~-~~~~~-~l~~~~G~iv~~g  263 (371)
T 3gqv_A          231 NLRYALDCITNV-E---ST-TFCFA-AIGRAGGHYVSLN  263 (371)
T ss_dssp             CCCEEEESSCSH-H---HH-HHHHH-HSCTTCEEEEESS
T ss_pred             CccEEEECCCch-H---HH-HHHHH-HhhcCCCEEEEEe
Confidence            379999887621 1   11 33566 78 6889999887

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=95.34  E-value=0.034  Score=48.83  Aligned_cols=80  Identities=20%  Similarity=0.125  Sum_probs=49.8

Q ss_pred             CCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          153 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       153 g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      +++|.|.| .|-||+.+++.|...|++|.++.|+.......... ..+. ..+.+.-...+.....++.++++.+|+|+.
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~-~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih   86 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHL-LELQ-ELGDLKIFRADLTDELSFEAPIAGCDFVFH   86 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHH-HHHG-GGSCEEEEECCTTTSSSSHHHHTTCSEEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHH-HhcC-CCCcEEEEecCCCChHHHHHHHcCCCEEEE
Confidence            68999999 79999999999999999999988765431100000 0000 000001111122234678889999999887


Q ss_pred             ecC
Q 024297          232 CLS  234 (269)
Q Consensus       232 ~lp  234 (269)
                      +..
T Consensus        87 ~A~   89 (338)
T 2rh8_A           87 VAT   89 (338)
T ss_dssp             ESS
T ss_pred             eCC
Confidence            653

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=95.34  E-value=0.022  Score=50.78  Aligned_cols=38  Identities=24%  Similarity=0.358  Sum_probs=34.3

Q ss_pred             cccCCEEEEEe-cCchHHHHHHHhcc--CCCEEEEEcCCCC
Q 024297          150 TLLGKTVFILG-FGNIGVELAKRLRP--FGVKIIATKRSWA  187 (269)
Q Consensus       150 ~l~g~~vgIiG-~G~iG~~~a~~l~~--~G~~V~~~~~~~~  187 (269)
                      ++.+++|.|.| .|-||+.+++.|..  .|++|++++|+..
T Consensus         7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~   47 (362)
T 3sxp_A            7 ELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS   47 (362)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCC
T ss_pred             hcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCc
Confidence            57899999996 59999999999999  8999999998654

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=95.33  E-value=0.013  Score=54.70  Aligned_cols=37  Identities=22%  Similarity=0.384  Sum_probs=32.9

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEE-EEcC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKII-ATKR  184 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~  184 (269)
                      +.++.|+||.|-|+|++|+.+|+.|...|++|+ +.|.
T Consensus       234 g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~  271 (456)
T 3r3j_A          234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDS  271 (456)
T ss_dssp             TCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECS
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            467999999999999999999999999999987 4543

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=95.33  E-value=0.0073  Score=56.01  Aligned_cols=97  Identities=19%  Similarity=0.072  Sum_probs=60.7

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-C-------------
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-C-------------  215 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------  215 (269)
                      -.|++|.|+|. |.||+.+++.++..|++|++++++..+......        -| ++..+.... .             
T Consensus       219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~--------lG-a~~~i~~~~~~~~~~~~~~~~~~~  289 (447)
T 4a0s_A          219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRA--------LG-CDLVINRAELGITDDIADDPRRVV  289 (447)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH--------TT-CCCEEEHHHHTCCTTGGGCHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh--------cC-CCEEEecccccccccccccccccc
Confidence            46889999998 999999999999999999999875443111100        00 000000000 0             


Q ss_pred             ------CCCHHHHHh-hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          216 ------HEDIFEFAS-KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       216 ------~~~l~ell~-~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                            ...+.++.. ..|+|+.++..  .   . -...+. .++++..+|+++-
T Consensus       290 ~~~~~~~~~v~~~~g~g~Dvvid~~G~--~---~-~~~~~~-~l~~~G~iv~~G~  337 (447)
T 4a0s_A          290 ETGRKLAKLVVEKAGREPDIVFEHTGR--V---T-FGLSVI-VARRGGTVVTCGS  337 (447)
T ss_dssp             HHHHHHHHHHHHHHSSCCSEEEECSCH--H---H-HHHHHH-HSCTTCEEEESCC
T ss_pred             hhhhHHHHHHHHHhCCCceEEEECCCc--h---H-HHHHHH-HHhcCCEEEEEec
Confidence                  011222222 48999998752  1   1 244677 8999999999973

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=95.32  E-value=0.0075  Score=54.26  Aligned_cols=64  Identities=16%  Similarity=0.142  Sum_probs=40.5

Q ss_pred             CEEEEEecCchHHHHHHHhccC---------CCEEEE-EcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH
Q 024297          154 KTVFILGFGNIGVELAKRLRPF---------GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA  223 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~---------G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  223 (269)
                      -+|||||+|.||+.+++.+...         +++|.+ ++++..+. ...             . ...   ..+++++++
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~-~~~-------------~-~~~---~~~d~~~ll   65 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKP-RAI-------------P-QEL---LRAEPFDLL   65 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSC-CSS-------------C-GGG---EESSCCCCT
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHh-hcc-------------C-ccc---ccCCHHHHh
Confidence            3799999999999999988654         466544 45543321 000             0 000   123455666


Q ss_pred             hhCCEEEEecCCC
Q 024297          224 SKADVVVCCLSLN  236 (269)
Q Consensus       224 ~~aDvvv~~lp~t  236 (269)
                       +.|+|+.+.|..
T Consensus        66 -~iDvVve~t~~~   77 (332)
T 2ejw_A           66 -EADLVVEAMGGV   77 (332)
T ss_dssp             -TCSEEEECCCCS
T ss_pred             -CCCEEEECCCCc
Confidence             999999998743

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=95.32  E-value=0.0091  Score=51.15  Aligned_cols=37  Identities=24%  Similarity=0.327  Sum_probs=33.1

Q ss_pred             ccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       151 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      +.+|++.|.| .|.||+++++.|...|++|++++|+..
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   42 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLE   42 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHH
Confidence            6789999999 589999999999999999999998653

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=95.31  E-value=0.0073  Score=54.02  Aligned_cols=83  Identities=17%  Similarity=0.226  Sum_probs=52.9

Q ss_pred             ccccCCEEEEEe-cCchHHHHHHHhccC-CC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh
Q 024297          149 ETLLGKTVFILG-FGNIGVELAKRLRPF-GV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK  225 (269)
Q Consensus       149 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~-G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  225 (269)
                      ..+.+++|.|.| .|.||+++++.|... |. +|++++|+..+......     .+.+..+.....+....+++.++++.
T Consensus        17 ~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~-----~~~~~~v~~~~~Dl~d~~~l~~~~~~   91 (344)
T 2gn4_A           17 NMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAM-----EFNDPRMRFFIGDVRDLERLNYALEG   91 (344)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHH-----HHCCTTEEEEECCTTCHHHHHHHTTT
T ss_pred             HhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHH-----HhcCCCEEEEECCCCCHHHHHHHHhc
Confidence            447899999999 599999999999998 98 99999986432100000     00000001111111133457788889


Q ss_pred             CCEEEEecCCC
Q 024297          226 ADVVVCCLSLN  236 (269)
Q Consensus       226 aDvvv~~lp~t  236 (269)
                      .|+|+.+....
T Consensus        92 ~D~Vih~Aa~~  102 (344)
T 2gn4_A           92 VDICIHAAALK  102 (344)
T ss_dssp             CSEEEECCCCC
T ss_pred             CCEEEECCCCC
Confidence            99998887543

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=95.30  E-value=0.027  Score=48.87  Aligned_cols=82  Identities=17%  Similarity=0.117  Sum_probs=51.3

Q ss_pred             CCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccc-cccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          153 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQ-VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       153 g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      .++|.|.| .|.+|+.+++.|...|.+|++.+|+...... .......  +...++.-...+....+++.++++.+|+|+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi   81 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLY--FKQLGAKLIEASLDDHQRLVDALKQVDVVI   81 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHH--HHTTTCEEECCCSSCHHHHHHHHTTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHH--HHhCCeEEEeCCCCCHHHHHHHHhCCCEEE
Confidence            46899999 5999999999999999999999987543100 0000000  000001111111223356888999999999


Q ss_pred             EecCCC
Q 024297          231 CCLSLN  236 (269)
Q Consensus       231 ~~lp~t  236 (269)
                      .+....
T Consensus        82 ~~a~~~   87 (313)
T 1qyd_A           82 SALAGG   87 (313)
T ss_dssp             ECCCCS
T ss_pred             ECCccc
Confidence            987654

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*

Probab=95.27  E-value=0.12  Score=49.64  Aligned_cols=132  Identities=8%  Similarity=0.024  Sum_probs=89.3

Q ss_pred             CCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhcc---
Q 024297           98 CGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRP---  174 (269)
Q Consensus        98 ~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~---  174 (269)
                      ..|++.|.-      ..-+|--+++.+++.+|-.                ++.+.+.+|.|.|.|..|-.+|+++..   
T Consensus       287 ~~ipvFnDD------iqGTA~V~lAgllnAlki~----------------gk~l~d~riv~~GAGaAgigia~ll~~~m~  344 (605)
T 1o0s_A          287 DKYTMFNDD------IQGTASVIVAGLLTCTRVT----------------KKLVSQEKYLFFGAGAASTGIAEMIVHQMQ  344 (605)
T ss_dssp             TTSEEEEHH------HHHHHHHHHHHHHHHHHHH----------------CCCGGGCCEEEECCSHHHHHHHHHHHHHHH
T ss_pred             cCCCeeCcc------cchHHHHHHHHHHHHHHHh----------------CCChhhcEEEEECCCHHHHHHHHHHHHHHH
Confidence            368888752      2456778888899888853                688999999999999999999999987   


Q ss_pred             -CCC-------EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh--CCEEEEecCCCccccCcCC
Q 024297          175 -FGV-------KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVVCCLSLNKQTVKLCS  244 (269)
Q Consensus       175 -~G~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDvvv~~lp~t~~t~~li~  244 (269)
                       .|.       +|+.+|+..--.....+.      .... ...........+|.++++.  +|+++-+-    ..-+.++
T Consensus       345 ~~Gl~~eeA~~~i~~vD~~Gli~~~r~~l------~~~k-~~~A~~~~~~~~L~eav~~vkpdVlIG~S----~~~g~ft  413 (605)
T 1o0s_A          345 NEGISKEEACNRIYLMDIDGLVTKNRKEM------NPRH-VQFAKDMPETTSILEVIRAARPGALIGAS----TVRGAFN  413 (605)
T ss_dssp             TTTCCHHHHHHTEEEEETTEECBTTCSSC------CGGG-TTTCBSSCCCCCHHHHHHHHCCSEEEECS----SCTTCSC
T ss_pred             HcCCChhhhhCeEEEEECCCceeCCCCCc------hHHH-HHHHhhcCCCCCHHHHHhhcCCCEEEEec----CCCCCCC
Confidence             785       599999754321100000      0000 0111111123579999995  99888762    1238999


Q ss_pred             HHHHhhhCC---CCcEEEEccC
Q 024297          245 SSLSSKSMF---FATYVVFMFQ  263 (269)
Q Consensus       245 ~~~l~~~mk---~ga~lIN~~R  263 (269)
                      ++.++ .|.   +..++.=.|.
T Consensus       414 ~evv~-~Ma~~~~~PIIFaLSN  434 (605)
T 1o0s_A          414 EEVIR-AMAEINERPIIFALSN  434 (605)
T ss_dssp             HHHHH-HHHHHCSSCEEEECCS
T ss_pred             HHHHH-HHHhcCCCCEEEECCC
Confidence            99999 996   5666665553

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=95.27  E-value=0.0076  Score=54.20  Aligned_cols=94  Identities=19%  Similarity=0.321  Sum_probs=60.2

Q ss_pred             cCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHH----HHh--
Q 024297          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE----FAS--  224 (269)
Q Consensus       152 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll~--  224 (269)
                      .|++|.|+|. |.+|+.+++.++..|++|++++++..+.....        .-| .+...+ . ...++.+    ...  
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~--------~~g-a~~~~d-~-~~~~~~~~~~~~~~~~  238 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL--------QNG-AHEVFN-H-REVNYIDKIKKYVGEK  238 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH--------HTT-CSEEEE-T-TSTTHHHHHHHHHCTT
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHH--------HcC-CCEEEe-C-CCchHHHHHHHHcCCC
Confidence            5789999997 99999999999999999999998654321100        001 001111 1 1123322    222  


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ..|+|+.+... +    .+ ...++ .++++..++.+|-
T Consensus       239 ~~D~vi~~~G~-~----~~-~~~~~-~l~~~G~iv~~g~  270 (351)
T 1yb5_A          239 GIDIIIEMLAN-V----NL-SKDLS-LLSHGGRVIVVGS  270 (351)
T ss_dssp             CEEEEEESCHH-H----HH-HHHHH-HEEEEEEEEECCC
T ss_pred             CcEEEEECCCh-H----HH-HHHHH-hccCCCEEEEEec
Confidence            58999988752 1    12 34577 8999999988874

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=95.26  E-value=0.0093  Score=51.20  Aligned_cols=73  Identities=14%  Similarity=0.090  Sum_probs=48.4

Q ss_pred             CEEEEEec-CchHHHHHHHhccC--CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          154 KTVFILGF-GNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      ++|.|.|. |.||+.+++.|...  |++|++++|+..+... ..        ...+.-...+....+++.++++.+|+|+
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~-l~--------~~~~~~~~~D~~d~~~l~~~~~~~d~vi   71 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAST-LA--------DQGVEVRHGDYNQPESLQKAFAGVSKLL   71 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHH-HH--------HTTCEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhH-Hh--------hcCCeEEEeccCCHHHHHHHHhcCCEEE
Confidence            46889996 99999999999998  9999999987644210 00        0000001111113346778889999998


Q ss_pred             EecCC
Q 024297          231 CCLSL  235 (269)
Q Consensus       231 ~~lp~  235 (269)
                      .+...
T Consensus        72 ~~a~~   76 (287)
T 2jl1_A           72 FISGP   76 (287)
T ss_dssp             ECCCC
T ss_pred             EcCCC
Confidence            87653

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=95.25  E-value=0.044  Score=49.11  Aligned_cols=98  Identities=19%  Similarity=0.108  Sum_probs=52.2

Q ss_pred             EEEEEecCchHHHHHHHhcc---------CCCEEEEEcCCCCCccccccccchhhhccccccccccccCC--CCCHHHHH
Q 024297          155 TVFILGFGNIGVELAKRLRP---------FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC--HEDIFEFA  223 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~---------~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell  223 (269)
                      +|||||+|.||+.+++.+..         .+.+|.++..+........+....+.       ........  ..++++++
T Consensus         4 rvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~-------~~~~~~~~~~~~d~~~ll   76 (327)
T 3do5_A            4 KIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALR-------MKRETGMLRDDAKAIEVV   76 (327)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHH-------HHHHHSSCSBCCCHHHHH
T ss_pred             EEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHh-------hhccCccccCCCCHHHHh
Confidence            79999999999999998875         47787666532211110000000000       00000011  23899998


Q ss_pred             hh--CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          224 SK--ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       224 ~~--aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      .+  .|+|+.+.|....+-. .-.-... .|+.|.-+|..
T Consensus        77 ~~~~iDvVv~~tp~~~h~~~-a~~~~~~-aL~aGkhVv~~  114 (327)
T 3do5_A           77 RSADYDVLIEASVTRVDGGE-GVNYIRE-ALKRGKHVVTS  114 (327)
T ss_dssp             HHSCCSEEEECCCCC----C-HHHHHHH-HHTTTCEEEEC
T ss_pred             cCCCCCEEEECCCCcccchh-HHHHHHH-HHHCCCeEEec
Confidence            74  8999999884422111 0111234 67777666543

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.25  E-value=0.0062  Score=53.42  Aligned_cols=38  Identities=29%  Similarity=0.333  Sum_probs=33.8

Q ss_pred             cccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       150 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      .+.||++.|.| .|.||+++|+.|...|++|++.+|+..
T Consensus        23 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~   61 (297)
T 1xhl_A           23 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNED   61 (297)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            47899999998 679999999999999999999998754

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.24  E-value=0.057  Score=48.87  Aligned_cols=91  Identities=16%  Similarity=0.132  Sum_probs=56.4

Q ss_pred             CEEEEEe-cCchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEE
Q 024297          154 KTVFILG-FGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv  230 (269)
                      .+|||+| .|-+|+++.++|... ..++..+.........-.+     .+|+     ...+.. ...+.++++.++|+|+
T Consensus        14 ~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~-----~~p~-----~~~~l~~~~~~~~~~~~~~Dvvf   83 (351)
T 1vkn_A           14 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEE-----IFPS-----TLENSILSEFDPEKVSKNCDVLF   83 (351)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHH-----HCGG-----GCCCCBCBCCCHHHHHHHCSEEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHH-----hChh-----hccCceEEeCCHHHhhcCCCEEE
Confidence            4899998 799999999999976 3477666532211110000     0000     000110 1124566668999999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +++|.      -.+++... .+ .|+.+|+.+
T Consensus        84 ~alp~------~~s~~~~~-~~-~g~~VIDlS  107 (351)
T 1vkn_A           84 TALPA------GASYDLVR-EL-KGVKIIDLG  107 (351)
T ss_dssp             ECCST------THHHHHHT-TC-CSCEEEESS
T ss_pred             ECCCc------HHHHHHHH-Hh-CCCEEEECC
Confidence            99983      34566666 66 899999987

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=95.24  E-value=0.022  Score=51.10  Aligned_cols=35  Identities=23%  Similarity=0.281  Sum_probs=32.1

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      |||+|+|-|..|.++++.++.+|++|+++|.++..
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~~   36 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQA   36 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            79999999999999999999999999999976643

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=95.22  E-value=0.021  Score=50.85  Aligned_cols=68  Identities=12%  Similarity=0.029  Sum_probs=44.4

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEE-EcCCCCCccccccccchhhhcccccccccccc----CCCCCHHHHHhh--C
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEK----GCHEDIFEFASK--A  226 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~ell~~--a  226 (269)
                      .+|||||+|.+|+..++.+ .-+++|.+ +|++.........             ....++    ..+.++++++.+  .
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ll~~~~v   68 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLE-------------KAISEMNIKPKKYNNWWEMLEKEKP   68 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHH-------------HHHHTTTCCCEECSSHHHHHHHHCC
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHH-------------HHHHHcCCCCcccCCHHHHhcCCCC
Confidence            4899999999999887777 66888775 5665422111110             010000    135789999985  8


Q ss_pred             CEEEEecCC
Q 024297          227 DVVVCCLSL  235 (269)
Q Consensus       227 Dvvv~~lp~  235 (269)
                      |+|+++.|.
T Consensus        69 D~V~I~tp~   77 (337)
T 3ip3_A           69 DILVINTVF   77 (337)
T ss_dssp             SEEEECSSH
T ss_pred             CEEEEeCCc
Confidence            999999873

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=95.22  E-value=0.028  Score=47.68  Aligned_cols=38  Identities=24%  Similarity=0.377  Sum_probs=33.9

Q ss_pred             cccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       150 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      ++.+|++.|.| .|.||+++++.|...|++|++.+|+..
T Consensus         4 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~   42 (250)
T 2fwm_X            4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFT   42 (250)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchh
Confidence            37789999999 589999999999999999999998754

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=95.21  E-value=0.025  Score=45.92  Aligned_cols=61  Identities=16%  Similarity=0.308  Sum_probs=43.7

Q ss_pred             CC-EEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh---CC
Q 024297          153 GK-TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK---AD  227 (269)
Q Consensus       153 g~-~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aD  227 (269)
                      +| ++.|.| .|.||+++++.|. .|++|++.+|+....                    ..+....+++++++++   .|
T Consensus         2 ~kM~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~~~--------------------~~D~~~~~~~~~~~~~~~~~d   60 (202)
T 3d7l_A            2 NAMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSGDV--------------------TVDITNIDSIKKMYEQVGKVD   60 (202)
T ss_dssp             CSCEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSSSE--------------------ECCTTCHHHHHHHHHHHCCEE
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCccce--------------------eeecCCHHHHHHHHHHhCCCC
Confidence            45 789998 6899999999999 999999999865310                    0011123456666665   79


Q ss_pred             EEEEecC
Q 024297          228 VVVCCLS  234 (269)
Q Consensus       228 vvv~~lp  234 (269)
                      +|+.+.-
T Consensus        61 ~vi~~ag   67 (202)
T 3d7l_A           61 AIVSATG   67 (202)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9988764

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.20  E-value=0.014  Score=54.46  Aligned_cols=37  Identities=24%  Similarity=0.353  Sum_probs=34.5

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      ++.+++|.|||+|..|.++|+.|+..|++|+++|...
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            4679999999999999999999999999999999854

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=95.20  E-value=0.022  Score=49.23  Aligned_cols=38  Identities=37%  Similarity=0.420  Sum_probs=33.2

Q ss_pred             ccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCC
Q 024297          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       149 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      ..+.||++.|.|. |.||+++|+.|...|++|++.+++.
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~   65 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNA   65 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4589999999995 6899999999999999999986543

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=95.19  E-value=0.024  Score=48.18  Aligned_cols=39  Identities=13%  Similarity=0.274  Sum_probs=34.6

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .+.||++.|.|. |.||+++|+.|...|++|++++|+...
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   43 (257)
T 3tpc_A            4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPA   43 (257)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            478999999995 789999999999999999999987654

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=95.18  E-value=0.0063  Score=55.59  Aligned_cols=65  Identities=14%  Similarity=0.196  Sum_probs=45.4

Q ss_pred             CCEEEEEecCchHHHHHHHhccC--CCEEEE-EcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCC
Q 024297          153 GKTVFILGFGNIGVELAKRLRPF--GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  227 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~--G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  227 (269)
                      -.+|||||.| +|+.-++.++..  ++++.+ ++++.++..                 .....++  .+.++++++.+.|
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~-----------------~~a~~~gv~~~~~~~~l~~~~D   68 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSR-----------------ELAHAFGIPLYTSPEQITGMPD   68 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHH-----------------HHHHHTTCCEESSGGGCCSCCS
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHH-----------------HHHHHhCCCEECCHHHHhcCCC
Confidence            4589999999 799988888765  688764 566544321                 1112222  2467888999999


Q ss_pred             EEEEecCC
Q 024297          228 VVVCCLSL  235 (269)
Q Consensus       228 vvv~~lp~  235 (269)
                      ++++++|.
T Consensus        69 ~v~i~~p~   76 (372)
T 4gmf_A           69 IACIVVRS   76 (372)
T ss_dssp             EEEECCC-
T ss_pred             EEEEECCC
Confidence            99999884

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.18  E-value=0.016  Score=50.64  Aligned_cols=39  Identities=23%  Similarity=0.442  Sum_probs=35.8

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      ...+.|++|.|+|.|.+|...++.|...|++|+++++..
T Consensus         8 ~~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A            8 AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             EEEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            357899999999999999999999999999999999754

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=95.17  E-value=0.01  Score=52.83  Aligned_cols=99  Identities=12%  Similarity=0.044  Sum_probs=56.8

Q ss_pred             CEEEEEecCchHHHHHHHhccCC--CEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv  230 (269)
                      +||+|||.|++|..++..+...+  -+|..+|....+.....   .++  .+.  ........ ...+ .+.++.||+|+
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a---~dl--~~~--~~~~~~~~v~~~~-~~a~~~aD~Vi   72 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHA---EDI--LHA--TPFAHPVWVWAGS-YGDLEGARAVV   72 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHH---HHH--HTT--GGGSCCCEEEECC-GGGGTTEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHH---HHH--HHh--HhhcCCeEEEECC-HHHhCCCCEEE
Confidence            48999999999999999888655  58999998643211000   000  000  00000000 1123 56689999999


Q ss_pred             EecCCCccccCc-------CCHH-------HHhhhCCCCcEEEEcc
Q 024297          231 CCLSLNKQTVKL-------CSSS-------LSSKSMFFATYVVFMF  262 (269)
Q Consensus       231 ~~lp~t~~t~~l-------i~~~-------~l~~~mk~ga~lIN~~  262 (269)
                      ++.+.. ...+.       .|..       .+. ...|++++||++
T Consensus        73 i~ag~~-~~~g~~r~dl~~~n~~i~~~i~~~i~-~~~p~a~iiv~t  116 (310)
T 2xxj_A           73 LAAGVA-QRPGETRLQLLDRNAQVFAQVVPRVL-EAAPEAVLLVAT  116 (310)
T ss_dssp             ECCCCC-CCTTCCHHHHHHHHHHHHHHHHHHHH-HHCTTCEEEECS
T ss_pred             ECCCCC-CCCCcCHHHHHHhhHHHHHHHHHHHH-HHCCCcEEEEec
Confidence            998743 22222       0111       222 236889999874

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=95.16  E-value=0.038  Score=51.98  Aligned_cols=101  Identities=16%  Similarity=0.125  Sum_probs=65.3

Q ss_pred             cccCCEEEEEec----------CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccc------ccc
Q 024297          150 TLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV------DEK  213 (269)
Q Consensus       150 ~l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  213 (269)
                      .+.|++|+|+|+          .+-...+++.|...|++|.+||+...+......    +       ....      ...
T Consensus       332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~----~-------~~~~~~~~~~~~~  400 (481)
T 2o3j_A          332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLND----L-------ASVTSAQDVERLI  400 (481)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHH----H-------HHHSCHHHHHHHE
T ss_pred             ccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHH----H-------HhhhccccccCce
Confidence            589999999996          578899999999999999999986542100000    0       0000      000


Q ss_pred             CCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          214 GCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       214 ~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      ....++.+.++.+|+|+++.... +.+. ++.+.+...|+...++++. |+
T Consensus       401 ~~~~~~~~~~~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~~~~~i~D~-r~  448 (481)
T 2o3j_A          401 TVESDPYAAARGAHAIVVLTEWD-EFVE-LNYSQIHNDMQHPAAIFDG-RL  448 (481)
T ss_dssp             EEESSHHHHHTTCSEEEECSCCG-GGTT-SCHHHHHHHSCSSCEEEES-SS
T ss_pred             eecCCHHHHHcCCCEEEEcCCcH-Hhhc-cCHHHHHHhcCCCCEEEEC-CC
Confidence            01256788899999999998754 3333 3555554367765566664 44

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=95.16  E-value=0.026  Score=50.09  Aligned_cols=81  Identities=15%  Similarity=0.156  Sum_probs=51.0

Q ss_pred             cccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh--C
Q 024297          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--A  226 (269)
Q Consensus       150 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--a  226 (269)
                      .+.+++|.|.| .|.||+.+++.|...|++|++++|+..+.......   .. ..+.+.-...+.....++.+++..  .
T Consensus         6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~   81 (357)
T 1rkx_A            6 FWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFET---AR-VADGMQSEIGDIRDQNKLLESIREFQP   81 (357)
T ss_dssp             HHTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHH---TT-TTTTSEEEECCTTCHHHHHHHHHHHCC
T ss_pred             hhCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHh---hc-cCCceEEEEccccCHHHHHHHHHhcCC
Confidence            36788999999 69999999999999999999999876542110000   00 000000011111123456777776  7


Q ss_pred             CEEEEecC
Q 024297          227 DVVVCCLS  234 (269)
Q Consensus       227 Dvvv~~lp  234 (269)
                      |+|+.+..
T Consensus        82 d~vih~A~   89 (357)
T 1rkx_A           82 EIVFHMAA   89 (357)
T ss_dssp             SEEEECCS
T ss_pred             CEEEECCC
Confidence            99988765

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=95.15  E-value=0.013  Score=53.95  Aligned_cols=72  Identities=17%  Similarity=0.129  Sum_probs=45.9

Q ss_pred             CCEEEEEecCc---hHHHHHHHhccCC-CEEE--EEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh-
Q 024297          153 GKTVFILGFGN---IGVELAKRLRPFG-VKII--ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK-  225 (269)
Q Consensus       153 g~~vgIiG~G~---iG~~~a~~l~~~G-~~V~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-  225 (269)
                      -.+|||||+|.   ||+..+..++..+ ++|.  ++|++..+......       ..|     ......+.++++++.. 
T Consensus        37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~-------~~g-----~~~~~~~~~~~~ll~~~  104 (417)
T 3v5n_A           37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGR-------ELG-----LDPSRVYSDFKEMAIRE  104 (417)
T ss_dssp             CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHH-------HHT-----CCGGGBCSCHHHHHHHH
T ss_pred             cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHH-------HcC-----CCcccccCCHHHHHhcc
Confidence            35899999999   9999888777654 7876  45776543211000       000     0000124789999987 


Q ss_pred             ------CCEEEEecCCC
Q 024297          226 ------ADVVVCCLSLN  236 (269)
Q Consensus       226 ------aDvvv~~lp~t  236 (269)
                            .|+|+++.|..
T Consensus       105 ~~~~~~vD~V~I~tp~~  121 (417)
T 3v5n_A          105 AKLKNGIEAVAIVTPNH  121 (417)
T ss_dssp             HHCTTCCSEEEECSCTT
T ss_pred             cccCCCCcEEEECCCcH
Confidence                  89999998843

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=95.15  E-value=0.011  Score=50.86  Aligned_cols=39  Identities=26%  Similarity=0.335  Sum_probs=34.6

Q ss_pred             cccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ++.+|++.|.| .|.||+++++.|...|++|++.+|+..+
T Consensus        31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~   70 (279)
T 3ctm_A           31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPA   70 (279)
T ss_dssp             CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            47899999998 6799999999999999999999987643

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=95.13  E-value=0.023  Score=50.82  Aligned_cols=75  Identities=17%  Similarity=0.119  Sum_probs=46.9

Q ss_pred             CEEEEEec-CchHHHHHHHhccCCC-------EEEEEcCC----CCCccccccccchhhhccccccccccccCCCCCHHH
Q 024297          154 KTVFILGF-GNIGVELAKRLRPFGV-------KIIATKRS----WASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE  221 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  221 (269)
                      .+|+|+|. |.+|+.++..|...|+       +|..+|+.    ..+.....   .++  .+... ..........++.+
T Consensus         6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~---~dl--~~~~~-~~~~~i~~~~~~~~   79 (329)
T 1b8p_A            6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVM---MEI--DDCAF-PLLAGMTAHADPMT   79 (329)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHH---HHH--HTTTC-TTEEEEEEESSHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhH---HHH--hhhcc-cccCcEEEecCcHH
Confidence            58999997 9999999999987775       89999986    21100000   000  00000 00011112367889


Q ss_pred             HHhhCCEEEEecC
Q 024297          222 FASKADVVVCCLS  234 (269)
Q Consensus       222 ll~~aDvvv~~lp  234 (269)
                      .++.||+|+.+..
T Consensus        80 al~~aD~Vi~~ag   92 (329)
T 1b8p_A           80 AFKDADVALLVGA   92 (329)
T ss_dssp             HTTTCSEEEECCC
T ss_pred             HhCCCCEEEEeCC
Confidence            9999999998865

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=95.13  E-value=0.012  Score=53.26  Aligned_cols=77  Identities=17%  Similarity=0.144  Sum_probs=48.6

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCC--CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      +.+++|+|||. |.+|+.+|..+..+|  .+|..+|....+.....   .++  .++....  .......++.+.++.||
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a---~DL--~~~~~~~--~~i~~t~d~~~al~dAD   78 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVA---EEI--RHCGFEG--LNLTFTSDIKEALTDAK   78 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHH---HHH--HHHCCTT--CCCEEESCHHHHHTTEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHH---Hhh--hhCcCCC--CceEEcCCHHHHhCCCC
Confidence            45789999998 999999998887777  48999998643211000   000  0000000  00001257888899999


Q ss_pred             EEEEecC
Q 024297          228 VVVCCLS  234 (269)
Q Consensus       228 vvv~~lp  234 (269)
                      +|+++..
T Consensus        79 vVvitaG   85 (343)
T 3fi9_A           79 YIVSSGG   85 (343)
T ss_dssp             EEEECCC
T ss_pred             EEEEccC
Confidence            9999864

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=95.12  E-value=0.013  Score=55.24  Aligned_cols=71  Identities=13%  Similarity=0.148  Sum_probs=46.6

Q ss_pred             CCEEEEEec----CchHHHHHHHhccC--CCEEE-EEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-
Q 024297          153 GKTVFILGF----GNIGVELAKRLRPF--GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-  224 (269)
Q Consensus       153 g~~vgIiG~----G~iG~~~a~~l~~~--G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-  224 (269)
                      -.+|||||+    |.||+..++.++..  +++|. ++|++..+......       ..|     ......+.+++++++ 
T Consensus        39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~-------~~g-----~~~~~~~~d~~ell~~  106 (479)
T 2nvw_A           39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIE-------QLQ-----LKHATGFDSLESFAQY  106 (479)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHH-------HTT-----CTTCEEESCHHHHHHC
T ss_pred             cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHH-------HcC-----CCcceeeCCHHHHhcC
Confidence            358999999    99999999998876  78865 56665433110000       000     000002478999996 


Q ss_pred             -hCCEEEEecCC
Q 024297          225 -KADVVVCCLSL  235 (269)
Q Consensus       225 -~aDvvv~~lp~  235 (269)
                       +.|+|++++|.
T Consensus       107 ~~vD~V~I~tp~  118 (479)
T 2nvw_A          107 KDIDMIVVSVKV  118 (479)
T ss_dssp             TTCSEEEECSCH
T ss_pred             CCCCEEEEcCCc
Confidence             68999999883

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=95.11  E-value=0.013  Score=50.39  Aligned_cols=39  Identities=26%  Similarity=0.376  Sum_probs=33.6

Q ss_pred             cccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCC
Q 024297          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       148 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      ...+.||++.|.|. |.||+++|+.|...|++|++.+++.
T Consensus        13 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~   52 (270)
T 3is3_A           13 PGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANS   52 (270)
T ss_dssp             TTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence            35689999999995 6899999999999999999976643

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=95.11  E-value=0.024  Score=48.44  Aligned_cols=40  Identities=25%  Similarity=0.399  Sum_probs=33.4

Q ss_pred             ccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       149 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ..+.+|++.|.| .|.||+++|+.|...|++|++.+|+..+
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   57 (253)
T 2nm0_A           17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEP   57 (253)
T ss_dssp             ---CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHh
Confidence            568899999999 5799999999999999999999987544

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=95.07  E-value=0.0089  Score=53.63  Aligned_cols=95  Identities=17%  Similarity=0.202  Sum_probs=60.4

Q ss_pred             cC--CEEEEEec-CchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh---
Q 024297          152 LG--KTVFILGF-GNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS---  224 (269)
Q Consensus       152 ~g--~~vgIiG~-G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---  224 (269)
                      .|  ++|.|+|. |.||+.+++.++..|+ +|++++++..+.......       -| .+...+ . ...++.+.+.   
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~-------~g-~~~~~d-~-~~~~~~~~~~~~~  227 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE-------LG-FDAAIN-Y-KKDNVAEQLRESC  227 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-------SC-CSEEEE-T-TTSCHHHHHHHHC
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH-------cC-CceEEe-c-CchHHHHHHHHhc
Confidence            46  89999998 9999999999999999 999999865331111000       01 001111 1 1134433333   


Q ss_pred             --hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 --KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 --~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                        ..|+|+.+...     .. -...++ .++++..+|.+|-
T Consensus       228 ~~~~d~vi~~~G~-----~~-~~~~~~-~l~~~G~iv~~G~  261 (357)
T 2zb4_A          228 PAGVDVYFDNVGG-----NI-SDTVIS-QMNENSHIILCGQ  261 (357)
T ss_dssp             TTCEEEEEESCCH-----HH-HHHHHH-TEEEEEEEEECCC
T ss_pred             CCCCCEEEECCCH-----HH-HHHHHH-HhccCcEEEEECC
Confidence              37999988751     11 244677 8999999988864

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=95.06  E-value=0.033  Score=48.51  Aligned_cols=62  Identities=19%  Similarity=0.238  Sum_probs=46.9

Q ss_pred             cCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh--hCCE
Q 024297          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV  228 (269)
Q Consensus       152 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDv  228 (269)
                      .+++|.|.| .|.||+.+++.|...|++|++++++..-                   +.    ...+++.++++  .+|+
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-------------------D~----~d~~~~~~~~~~~~~d~   58 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDEL-------------------NL----LDSRAVHDFFASERIDQ   58 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTC-------------------CT----TCHHHHHHHHHHHCCSE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccC-------------------Cc----cCHHHHHHHHHhcCCCE
Confidence            357899999 5999999999999999999998865321                   01    12245777888  8999


Q ss_pred             EEEecCCC
Q 024297          229 VVCCLSLN  236 (269)
Q Consensus       229 vv~~lp~t  236 (269)
                      |+.+....
T Consensus        59 vih~a~~~   66 (321)
T 1e6u_A           59 VYLAAAKV   66 (321)
T ss_dssp             EEECCCCC
T ss_pred             EEEcCeec
Confidence            98887544

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=95.04  E-value=0.033  Score=47.74  Aligned_cols=40  Identities=28%  Similarity=0.290  Sum_probs=35.0

Q ss_pred             ccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       149 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .++.+|++.|.| .|.||+++|+.|...|++|++.+|+..+
T Consensus         4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~   44 (264)
T 2dtx_A            4 SDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG   44 (264)
T ss_dssp             GGGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc
Confidence            357899999998 6899999999999999999999987543

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=95.03  E-value=0.021  Score=48.48  Aligned_cols=39  Identities=21%  Similarity=0.283  Sum_probs=34.9

Q ss_pred             cccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ++.+|++.|.| .|.||+++++.|...|++|++++|+..+
T Consensus         9 ~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~   48 (265)
T 2o23_A            9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSG   48 (265)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSS
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHh
Confidence            47899999998 5899999999999999999999987654

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=95.00  E-value=0.011  Score=52.67  Aligned_cols=98  Identities=16%  Similarity=0.158  Sum_probs=61.2

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccCC-CCCHHHHHh--hC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC-HEDIFEFAS--KA  226 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~--~a  226 (269)
                      -.|.+|.|+|.|.+|+.+++.++.+ |.+|++++++..+.....        .-| ++........ .+.+.++..  ..
T Consensus       170 ~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~--------~lG-a~~~i~~~~~~~~~v~~~t~g~g~  240 (345)
T 3jv7_A          170 GPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAR--------EVG-ADAAVKSGAGAADAIRELTGGQGA  240 (345)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH--------HTT-CSEEEECSTTHHHHHHHHHGGGCE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH--------HcC-CCEEEcCCCcHHHHHHHHhCCCCC
Confidence            4588999999999999999999988 789999988765421110        001 0111111000 011223333  58


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |+++-++... .   .+ ...++ .++++..++.++-
T Consensus       241 d~v~d~~G~~-~---~~-~~~~~-~l~~~G~iv~~G~  271 (345)
T 3jv7_A          241 TAVFDFVGAQ-S---TI-DTAQQ-VVAVDGHISVVGI  271 (345)
T ss_dssp             EEEEESSCCH-H---HH-HHHHH-HEEEEEEEEECSC
T ss_pred             eEEEECCCCH-H---HH-HHHHH-HHhcCCEEEEECC
Confidence            9999987632 1   22 34677 8999999998873

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.99  E-value=0.022  Score=50.74  Aligned_cols=35  Identities=20%  Similarity=0.260  Sum_probs=31.6

Q ss_pred             CCEEEEEecCchHHH-HHHHhccCCCEEEEEcCCCC
Q 024297          153 GKTVFILGFGNIGVE-LAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       153 g~~vgIiG~G~iG~~-~a~~l~~~G~~V~~~~~~~~  187 (269)
                      .++|.|||.|.+|.. +|+.|+..|++|.++|.+..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            478999999999995 99999999999999998654

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=94.99  E-value=0.023  Score=48.96  Aligned_cols=41  Identities=27%  Similarity=0.453  Sum_probs=34.5

Q ss_pred             cccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       148 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ...+.||++.|.|. |.||+++|+.|...|++|++.+|+...
T Consensus        23 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~   64 (266)
T 3uxy_A           23 MQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAG   64 (266)
T ss_dssp             ---CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTT
T ss_pred             hhCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            35689999999995 679999999999999999999987654

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=94.99  E-value=0.018  Score=52.11  Aligned_cols=30  Identities=23%  Similarity=0.393  Sum_probs=25.6

Q ss_pred             CEEEEEe-cCchHHHHHHHhccC-CCEEEEEc
Q 024297          154 KTVFILG-FGNIGVELAKRLRPF-GVKIIATK  183 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~~  183 (269)
                      .+|||+| +|.+|+.+.+.|... .++|.++.
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~   36 (350)
T 2ep5_A            5 IKVSLLGSTGMVGQKMVKMLAKHPYLELVKVS   36 (350)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             cEEEEECcCCHHHHHHHHHHHhCCCcEEEEEe
Confidence            5899999 899999999999876 46887774

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=94.98  E-value=0.031  Score=49.26  Aligned_cols=83  Identities=14%  Similarity=0.024  Sum_probs=49.4

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCC--CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh-
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK-  225 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-  225 (269)
                      ...+++|.|.|. |.||+.+++.|...|  .+|++.++...........  .. ..+..+.-...+....+++.++++. 
T Consensus        21 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~--~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~   97 (346)
T 4egb_A           21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVK--SI-QDHPNYYFVKGEIQNGELLEHVIKER   97 (346)
T ss_dssp             ---CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGT--TT-TTCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhh--hh-ccCCCeEEEEcCCCCHHHHHHHHhhc
Confidence            367789999997 999999999999988  8899998765322111000  00 0000000011111133457788887 


Q ss_pred             -CCEEEEecCC
Q 024297          226 -ADVVVCCLSL  235 (269)
Q Consensus       226 -aDvvv~~lp~  235 (269)
                       +|+|+.+...
T Consensus        98 ~~d~Vih~A~~  108 (346)
T 4egb_A           98 DVQVIVNFAAE  108 (346)
T ss_dssp             TCCEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence             9999887653

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=94.97  E-value=0.022  Score=51.38  Aligned_cols=94  Identities=14%  Similarity=0.181  Sum_probs=60.6

Q ss_pred             cCCEEEEEe-cCchHHHHHHHhcc-CCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----
Q 024297          152 LGKTVFILG-FGNIGVELAKRLRP-FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----  224 (269)
Q Consensus       152 ~g~~vgIiG-~G~iG~~~a~~l~~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----  224 (269)
                      .|++|.|+| .|.+|+.+++.++. .|.+|++++++..+.....        .-| .+..++   ..+++.+.+.     
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~--------~lG-ad~vi~---~~~~~~~~v~~~~~~  238 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVK--------SLG-AHHVID---HSKPLAAEVAALGLG  238 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH--------HTT-CSEEEC---TTSCHHHHHHTTCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH--------HcC-CCEEEe---CCCCHHHHHHHhcCC
Confidence            688999999 99999999999998 5999999998654321110        000 011111   1124444443     


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ..|+|+-++...    ..+ ...++ .++++..++.++.
T Consensus       239 g~Dvvid~~g~~----~~~-~~~~~-~l~~~G~iv~~g~  271 (363)
T 4dvj_A          239 APAFVFSTTHTD----KHA-AEIAD-LIAPQGRFCLIDD  271 (363)
T ss_dssp             CEEEEEECSCHH----HHH-HHHHH-HSCTTCEEEECSC
T ss_pred             CceEEEECCCch----hhH-HHHHH-HhcCCCEEEEECC
Confidence            478888876411    112 34677 8999999998853

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=94.95  E-value=0.0093  Score=51.59  Aligned_cols=40  Identities=20%  Similarity=0.261  Sum_probs=34.8

Q ss_pred             ccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       149 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .++.||++.|.| .|.||+++|+.|...|++|++++|+..+
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   47 (281)
T 3svt_A            7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDK   47 (281)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             cCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            358899999999 5789999999999999999999987543

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=94.93  E-value=0.02  Score=54.74  Aligned_cols=86  Identities=15%  Similarity=0.191  Sum_probs=55.6

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH-HhhCCEEEEe
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDvvv~~  232 (269)
                      +++.|+|+|.+|+.+|+.|...|.+|+++|.++.......      .+       ...+....+.|+++ ++++|.++.+
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~------~~-------i~gD~t~~~~L~~agi~~ad~vi~~  415 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDH------VV-------VYGDATVGQTLRQAGIDRASGIIVT  415 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSS------CE-------EESCSSSSTHHHHHTTTSCSEEEEC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcC------CE-------EEeCCCCHHHHHhcCccccCEEEEE
Confidence            7899999999999999999999999999998876532110      00       11111122334433 6799999999


Q ss_pred             cCCCccccCcCCHHHHhhhCCCC
Q 024297          233 LSLNKQTVKLCSSSLSSKSMFFA  255 (269)
Q Consensus       233 lp~t~~t~~li~~~~l~~~mk~g  255 (269)
                      .+..+  .+++-....+ .+.+.
T Consensus       416 ~~~d~--~ni~~~~~ak-~l~~~  435 (565)
T 4gx0_A          416 TNDDS--TNIFLTLACR-HLHSH  435 (565)
T ss_dssp             CSCHH--HHHHHHHHHH-HHCSS
T ss_pred             CCCch--HHHHHHHHHH-HHCCC
Confidence            87542  2333333333 55555

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=94.92  E-value=0.014  Score=50.86  Aligned_cols=40  Identities=25%  Similarity=0.176  Sum_probs=32.8

Q ss_pred             cccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       148 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      ..++.+|++.|.|. |.||+++|+.|...|++|++++|+..
T Consensus        23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   63 (283)
T 3v8b_A           23 MMNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRT   63 (283)
T ss_dssp             ----CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             hcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35688999999994 78999999999999999999998754

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=94.92  E-value=0.0045  Score=54.81  Aligned_cols=94  Identities=15%  Similarity=0.164  Sum_probs=61.9

Q ss_pred             ccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCC-HHHHHhhCCE
Q 024297          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED-IFEFASKADV  228 (269)
Q Consensus       151 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell~~aDv  228 (269)
                      -.|.+|.|+| .|.+|+.+++.++.+|++|++.++.. + .....       .-| ++..++ . ...+ +.+.+...|+
T Consensus       151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~-~-~~~~~-------~lG-a~~~i~-~-~~~~~~~~~~~g~D~  218 (321)
T 3tqh_A          151 KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKR-N-HAFLK-------ALG-AEQCIN-Y-HEEDFLLAISTPVDA  218 (321)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHH-H-HHHHH-------HHT-CSEEEE-T-TTSCHHHHCCSCEEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccc-h-HHHHH-------HcC-CCEEEe-C-CCcchhhhhccCCCE
Confidence            4678999997 99999999999999999999887432 1 11000       001 011111 1 1233 6666678999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ++-++.. +    .+ ...++ .++++..++.++.
T Consensus       219 v~d~~g~-~----~~-~~~~~-~l~~~G~iv~~g~  246 (321)
T 3tqh_A          219 VIDLVGG-D----VG-IQSID-CLKETGCIVSVPT  246 (321)
T ss_dssp             EEESSCH-H----HH-HHHGG-GEEEEEEEEECCS
T ss_pred             EEECCCc-H----HH-HHHHH-hccCCCEEEEeCC
Confidence            9998752 1    12 55778 8999999998853

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=94.90  E-value=0.087  Score=52.70  Aligned_cols=96  Identities=14%  Similarity=0.088  Sum_probs=63.9

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh----
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS----  224 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~----  224 (269)
                      --.|.+|.|+|. |.+|+..++.++.+|++|++.+.+.+. . ....        | .+..+..  ...++.+.+.    
T Consensus       343 l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~k~-~-~l~l--------g-a~~v~~~--~~~~~~~~i~~~t~  409 (795)
T 3slk_A          343 LRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASEDKW-Q-AVEL--------S-REHLASS--RTCDFEQQFLGATG  409 (795)
T ss_dssp             CCTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGGGG-G-GSCS--------C-GGGEECS--SSSTHHHHHHHHSC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChHHh-h-hhhc--------C-hhheeec--CChhHHHHHHHHcC
Confidence            347899999996 999999999999999999998865421 1 0000        0 0111111  1234444332    


Q ss_pred             --hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          225 --KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       225 --~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                        ..|+|+.++..     ..+ .+.++ .++++..||.+|...
T Consensus       410 g~GvDvVld~~gg-----~~~-~~~l~-~l~~~Gr~v~iG~~~  445 (795)
T 3slk_A          410 GRGVDVVLNSLAG-----EFA-DASLR-MLPRGGRFLELGKTD  445 (795)
T ss_dssp             SSCCSEEEECCCT-----TTT-HHHHT-SCTTCEEEEECCSTT
T ss_pred             CCCeEEEEECCCc-----HHH-HHHHH-HhcCCCEEEEecccc
Confidence              48999998752     122 56788 999999999998543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	269
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	2e-12
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	3e-10
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	3e-08
d1gdha2	129	c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog	3e-07
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	9e-07
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	9e-07
d1sc6a2	132	c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh	2e-06
d1ygya2	130	c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy	2e-06
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	3e-06
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	1e-05
d1hwxa1	293	c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (	1e-04
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	6e-04
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	0.001
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	0.002
d1c1da1	201	c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {R	0.002

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 61.1 bits (148), Expect = 2e-12
 Identities = 16/126 (12%), Positives = 41/126 (32%), Gaps = 13/126 (10%)

Query: 13  TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYH----LCVVKTMRLDS 68
           T++            + KE+   +  ++V+       P+ +A       + V + +   +
Sbjct: 1   TKIFAYAIR-EDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIA 59

Query: 69  NCISRANQMKLIM--QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLG 126
             +       +       VG++ +D+  A   G ++  +P        S     +  M+ 
Sbjct: 60  ETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPV------YSYTTHAVRNMVV 113

Query: 127 LLRKQN 132
                N
Sbjct: 114 KAFDNN 119

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 54.2 bits (130), Expect = 3e-10
 Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 32/134 (23%)

Query: 46  ISDVPDVIANYHL---CVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKV 102
           +     ++    L         R+ +  +++  ++K I     GL+ +   +     + V
Sbjct: 17  LRKYFKIVRGGDLGNVEAALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPP-HVTV 75

Query: 103 ARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG 162
           A   G    N      +   +++  +R                          +     G
Sbjct: 76  AGNAG---SNGYGNERVWRQMVMEAVR-------------------------NLITYATG 107

Query: 163 NIGVELAKRLRPFG 176
                +AKR    G
Sbjct: 108 GRPRNIAKREDYIG 121

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 49.2 bits (117), Expect = 3e-08
 Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
             +  T+ L    + +   +++I++ G G + +DI +A   GI V  +P      +    
Sbjct: 47  ALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVP----AASVYSE 102

Query: 118 ELTIYLMLGLLRK 130
           + +I +     R+
Sbjct: 103 QASIEMREEAARE 115

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 46.1 bits (109), Expect = 3e-07
 Identities = 15/75 (20%), Positives = 25/75 (33%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L  +               +K I  + +G + +D++A    GIKV   P   T      A
Sbjct: 49  LITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMA 108

Query: 118 ELTIYLMLGLLRKQN 132
                L+  L    +
Sbjct: 109 HQANDLIDALFGGAD 123

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 46.1 bits (109), Expect = 9e-07
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 46  ISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARI 105
           + D   VI+           L    I++A  +KL +  G+G + VD+ +A    + VA +
Sbjct: 87  LVDADVVISQPFWPAY----LTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEV 142

Query: 106 PGDVTGNAASCAELTIYLML 125
                 N+ +      Y   
Sbjct: 143 TY---CNSTTLTAQARYAAG 159

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 45.1 bits (106), Expect = 9e-07
 Identities = 10/113 (8%), Positives = 36/113 (31%), Gaps = 9/113 (7%)

Query: 33  LQNYPSIQVDVVPISDVPDV---IANYH-LCVVKTMRLDSNCISRANQMKLI--MQFGVG 86
                   ++        +       +  +  ++T    +    + +   +       VG
Sbjct: 19  WAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVG 78

Query: 87  LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIE 139
            + +D+ A  + GI+++ +P        +   +  + +  L+    +   + E
Sbjct: 79  TDNIDMTAMKQYGIRLSNVPA---YTETAVHNMVYFSLQHLVDFLTKGETSTE 128

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 14/135 (10%)

Query: 9   DKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPIS----DVPDVIANYHLCVVKTM 64
           +K+  + L         H    E L+      ++    +     + + I + H   +++ 
Sbjct: 1   EKDKIKFLLVEG----VHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSR 56

Query: 65  RL-DSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
                + I+ A ++  I  F +G   VD++AA + GI V   P   T       E     
Sbjct: 57  THLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQ---EAQENIGLE 113

Query: 124 MLGLLRKQ--NEMRM 136
           + G L K   N   +
Sbjct: 114 VAGKLIKYSDNGSTL 128

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 39  IQVDVVPISDVPDVIA---NYHLCVVKTMRLDSNCI-SRANQMKLIMQFGVGLEGVDINA 94
           ++V  V   D   ++A        +V++       + + A ++K++ + GVGL+ VD++A
Sbjct: 23  VEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDA 82

Query: 95  ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK 142
           AT  G+ V   P      + + A+      +    +       +    
Sbjct: 83  ATARGVLVVNAPTS---ASTAEAQDRAGTDVAESVRLALAGEFVPDAV 127

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 44.5 bits (104), Expect = 3e-06
 Identities = 33/149 (22%), Positives = 51/149 (34%), Gaps = 21/149 (14%)

Query: 115 SCAELTIYLMLGLLRKQNEMRMAIEQKK-----LGVPTGETLLGKTVFILGFGNIGVELA 169
           + AE+ + L+LG  R+  E    I  +           GE L  KT+ I GFG+IG  LA
Sbjct: 4   ATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALA 63

Query: 170 KRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229
           KR + F + I       AS S  +                  +   H+ +    S +   
Sbjct: 64  KRAQGFDMDIDYFDTHRASSSDEASY----------------QATFHDSLDSLLSVSQFF 107

Query: 230 VCCLSLNKQTVKLCSSSLSSKSMFFATYV 258
                   +T    + +        A  V
Sbjct: 108 SLNAPSTPETRYFFNKATIKSLPQGAIVV 136

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 33/151 (21%), Positives = 56/151 (37%), Gaps = 20/151 (13%)

Query: 112 NAASCAELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELA 169
           N  S AE  + L+L   R+      ++ +   K    +G  + GKTV ++G G IG  +A
Sbjct: 1   NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVA 60

Query: 170 KRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229
           +R+  FG  ++A                   V       L  E    +D+    ++AD +
Sbjct: 61  QRIAAFGAYVVAYDPY---------------VSPARAAQLGIELLSLDDLL---ARADFI 102

Query: 230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVF 260
              L    +T  L      +K+      V  
Sbjct: 103 SVHLPKTPETAGLIDKEALAKTKPGVIIVNA 133

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 293

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 8/105 (7%)

Query: 134 MRMAIEQKKLGVPTG--ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT---KRSWAS 188
           +   IE        G       KT  + GFGN+G+   + L  FG K +A      S  +
Sbjct: 15  IENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWN 74

Query: 189 HSQVSCQSS-ALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232
              +  +      +++G I      K     I E     D+++  
Sbjct: 75  PDGIDPKELEDFKLQHGTILGFPKAKIYEGSILE--VDCDILIPA 117

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 6e-04
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186
           T   + GK   + G+G++G   A+ LR FG ++I T+   
Sbjct: 18  TDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP 57

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 27/140 (19%), Positives = 42/140 (30%), Gaps = 20/140 (14%)

Query: 115 SCAELTIYLMLGLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAK 170
           S AE  + ++L L+R         R         V     L    V  +  G IG+ + +
Sbjct: 2   SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLR 61

Query: 171 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230
           RL PF V +  T R     S     +                   H    +     DVV 
Sbjct: 62  RLAPFDVHLHYTDRHRLPESVEKELNLT----------------WHATREDMYPVCDVVT 105

Query: 231 CCLSLNKQTVKLCSSSLSSK 250
               L+ +T  + +      
Sbjct: 106 LNCPLHPETEHMINDETLKL 125

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 22/157 (14%), Positives = 46/157 (29%), Gaps = 11/157 (7%)

Query: 115 SCAELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           + AE        +LR+   M   + +   +     G  +  + V ++G G+IG    + +
Sbjct: 3   AIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIM 62

Query: 173 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK---------GCHEDIFEFA 223
             FG K+I          +                D++              +++     
Sbjct: 63  EGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKM 122

Query: 224 SKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVF 260
            +  V+V                L S  +F     V+
Sbjct: 123 KQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVY 159

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Length = 201

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 134 MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           M+  +  + LG     +L G TV + G G +G  LA      G +++
Sbjct: 13  MKATVAHRGLG-----SLDGLTVLVQGLGAVGGSLASLAAEAGAQLL 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.89
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.86
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.83
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.83
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.79
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.77
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.75
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.75
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.57
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.35
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.25
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.1
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.02
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	98.93
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.88
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.85
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.8
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.77
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	98.74
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.68
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	98.64
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	98.62
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	98.61
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.55
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	98.52
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	98.44
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.42
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.35
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.32
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.32
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.32
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.29
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.25
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.24
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.17
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.14
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.05
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.99
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.97
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.96
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.92
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.91
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.9
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.85
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.81
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.81
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.79
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.74
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.67
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	97.58
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.57
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.54
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.5
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.47
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.45
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.43
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.42
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.4
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.3
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	97.3
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.3
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.29
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	97.28
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.27
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.25
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.22
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.17
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.16
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.14
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.09
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.04
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.04
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.02
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.95
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	96.93
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.92
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.91
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	96.88
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	96.87
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.87
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.85
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	96.81
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.73
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.7
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.7
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.68
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	96.66
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.62
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.59
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.57
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	96.54
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.49
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.36
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.35
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.35
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.34
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	96.32
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.25
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.23
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	96.19
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.16
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	96.12
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.12
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.05
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.04
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.03
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.01
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.01
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.94
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	95.93
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.93
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	95.92
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.89
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	95.88
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.87
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	95.87
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.77
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.75
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.71
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	95.68
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	95.68
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.67
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.66
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.66
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	95.61
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.6
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.59
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.53
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	95.52
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.5
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.49
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.48
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.44
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.43
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	95.41
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.4
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.38
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	95.37
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	95.37
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	95.35
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	95.33
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	95.33
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.32
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	95.29
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	95.28
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	95.25
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	95.2
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.19
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.18
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	95.13
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	95.09
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.08
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.06
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.0
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.99
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	94.98
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.95
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	94.87
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	94.84
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.82
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	94.82
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	94.73
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.72
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	94.71
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	94.65
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.63
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	94.59
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	94.59
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.55
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	94.53
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	94.53
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	94.49
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	94.47
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.44
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	94.43
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	94.38
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.35
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	94.34
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	94.32
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	94.27
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	94.25
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	94.24
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.23
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	94.22
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.21
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	94.16
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.14
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	94.12
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.06
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	94.06
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	94.05
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	94.02
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	94.0
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	93.99
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	93.98
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.95
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	93.91
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	93.89
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	93.87
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	93.83
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	93.82
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	93.79
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	93.77
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	93.68
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.66
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	93.44
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	93.42
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	93.3
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	93.27
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	93.26
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	93.22
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	93.16
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	93.15
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	93.14
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	93.13
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	93.06
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	93.01
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	92.87
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	92.83
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	92.81
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	92.68
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	92.66
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	92.58
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	92.51
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	92.43
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	92.37
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	92.31
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	92.24
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	92.24
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	92.24
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	92.22
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	92.22
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	92.13
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	92.13
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.06
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	92.02
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	91.98
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	91.96
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	91.93
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	91.93
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	91.91
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	91.86
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	91.81
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	91.76
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	91.75
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	91.71
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	91.59
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	91.59
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	91.56
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.5
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	91.48
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	91.41
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.23
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	91.22
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	90.81
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	90.81
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	90.74
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.72
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	90.62
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	90.57
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	90.48
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	90.36
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	90.35
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	90.33
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	90.32
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.27
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	90.03
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.99
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	89.9
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	89.79
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	89.61
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	89.56
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	89.46
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	89.36
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.18
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	89.12
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	89.08
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	89.04
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	88.97
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	88.89
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	88.77
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.7
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	88.68
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	88.62
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	88.59
d2vjma1	427	Formyl-CoA transferase {Oxalobacter formigenes [Ta	88.37
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	88.3
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	88.15
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	88.14
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	87.87
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	87.87
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	87.79
d1xk7a1	402	Crotonobetainyl-CoA:carnitine CoA-transferase, Cai	87.78
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	87.77
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	87.72
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	87.66
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	87.6
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	87.37
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.18
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	87.13
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	87.11
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	86.94
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	86.92
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.86
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	86.7
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	86.61
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	86.6
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.54
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	86.46
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	86.31
d1js1x2	161	Transcarbamylase-like protein {Bacteroides fragili	86.2
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	86.18
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	86.12
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	86.09
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	86.01
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	85.61
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	85.52
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	85.47
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	85.29
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	85.19
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	85.13
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	84.99
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	84.96
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	84.59
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	84.57
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	84.54
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	84.44
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	84.42
d1q7ea_	417	Hypothetical protein YfdW {Escherichia coli [TaxId	84.42
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	84.41
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	83.81
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	82.99
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	82.78
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	82.51
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	82.32
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	82.15
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	81.26
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	80.47
d1x74a1	359	2-methylacyl-CoA racemase Mcr {Mycobacterium tuber	80.43
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	80.4

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.7e-36  Score=252.72  Aligned_cols=139  Identities=21%  Similarity=0.230  Sum_probs=124.6

Q ss_pred             CcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC--CccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCc
Q 024297          112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (269)
Q Consensus       112 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~  189 (269)
                      |+.+||||+++++|++.|++..+++.++++.|..  ..+.++.|+++||+|+|+||+++|+++++|||+|++||++..+.
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~~~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~   80 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPA   80 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHH
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccccccccccceeeeeccccchhHHHHHHhhhccceEEeecCCCChh
Confidence            5689999999999999999999999999999975  36789999999999999999999999999999999999876541


Q ss_pred             cccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          190 SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                                        ..........++++++++||+|++|||+|++|+++||++.|+ +||+|++|||+|||++|||
T Consensus        81 ------------------~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~-~mk~~a~lIN~sRG~iVde  141 (184)
T d1ygya1          81 ------------------RAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALA-KTKPGVIIVNAARGGLVDE  141 (184)
T ss_dssp             ------------------HHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHT-TSCTTEEEEECSCTTSBCH
T ss_pred             ------------------HHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHh-hhCCCceEEEecchhhhhh
Confidence                              111111135789999999999999999999999999999999 9999999999999999996

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=2.9e-35  Score=246.82  Aligned_cols=138  Identities=18%  Similarity=0.218  Sum_probs=122.2

Q ss_pred             chHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC---------CccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcC
Q 024297          114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---------PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (269)
Q Consensus       114 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~---------~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~  184 (269)
                      ++|||++++++|++.|++..+++.++++.|..         ..+.+|.|+||||||+|+||+++|+++++|||+|++||+
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~   80 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP   80 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccC
Confidence            47999999999999999999999999999975         347899999999999999999999999999999999998


Q ss_pred             CCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          185 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      .......                 .........++++++++||+|++|+|+|++|+++||++.|+ +||+|++|||+|||
T Consensus        81 ~~~~~~~-----------------~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~-~mk~~a~lIN~sRG  142 (193)
T d1mx3a1          81 YLSDGVE-----------------RALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVK-QMRQGAFLVNTARG  142 (193)
T ss_dssp             TSCTTHH-----------------HHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHT-TSCTTEEEEECSCT
T ss_pred             cccccch-----------------hhhccccccchhhccccCCEEEEeecccccchhhhhHHHHh-ccCCCCeEEecCCc
Confidence            7654210                 00011134689999999999999999999999999999999 99999999999999


Q ss_pred             CCccC
Q 024297          265 HGVSF  269 (269)
Q Consensus       265 ~~vde  269 (269)
                      ++|||
T Consensus       143 ~ivde  147 (193)
T d1mx3a1         143 GLVDE  147 (193)
T ss_dssp             TSBCH
T ss_pred             eEEcH
Confidence            99996

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=3.5e-35  Score=247.01  Aligned_cols=136  Identities=18%  Similarity=0.216  Sum_probs=121.4

Q ss_pred             chHHHHHHHHHHHHhhcHHHHHHHHHhCCC--CCCccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccc
Q 024297          114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKL--GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ  191 (269)
Q Consensus       114 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w--~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~  191 (269)
                      ++||||+++++|+++|++..+++.++++.|  ....|++|.|+||||||+|+||+.+|+++++|||+|++||+...+.  
T Consensus         2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~~~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~--   79 (197)
T d1j4aa1           2 NAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--   79 (197)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--
T ss_pred             CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcCCCcCccccCCeEEEecccccchhHHHhHhhhcccccccCcccccc--
Confidence            579999999999999999999999999865  4457899999999999999999999999999999999999875431  


Q ss_pred             cccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          192 VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                                       .........++++++++||+|++|+|+|++|+++||++.|+ .||+|++|||+|||++|||
T Consensus        80 -----------------~~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~-~mk~~a~lIN~sRG~ivde  139 (197)
T d1j4aa1          80 -----------------LEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIA-KMKQDVVIVNVSRGPLVDT  139 (197)
T ss_dssp             -----------------HHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHH-HSCTTEEEEECSCGGGBCH
T ss_pred             -----------------cccceeeeccccccccccccccccCCccccccccccHHHHh-hhCCccEEEecCchhhhhh
Confidence                             11111234789999999999999999999999999999999 9999999999999999996

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=8.5e-35  Score=245.24  Aligned_cols=135  Identities=19%  Similarity=0.164  Sum_probs=121.9

Q ss_pred             chHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC---CccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcc
Q 024297          114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS  190 (269)
Q Consensus       114 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~---~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~  190 (269)
                      ++||||+++++|++.|++..+++.++++.|..   ..+++|.|+||||||+|+||+.+|++|++|||+|++||++.....
T Consensus         3 ~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~   82 (199)
T d1dxya1           3 AAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD   82 (199)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC
T ss_pred             hHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcccCcccccccceeeeeeecccccccccccccccceeeeccCCccchhh
Confidence            67999999999999999999999999999963   457899999999999999999999999999999999998764411


Q ss_pred             ccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          191 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      .                    ......++++++++||+|++|+|+|++|+++||++.|+ +||+|++|||+|||++|||
T Consensus        83 ~--------------------~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~-~mk~~a~lIN~aRG~vvde  140 (199)
T d1dxya1          83 H--------------------PDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFN-LMKPGAIVINTARPNLIDT  140 (199)
T ss_dssp             C--------------------TTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHH-HSCTTEEEEECSCTTSBCH
T ss_pred             h--------------------cchhHHHHHHHHHhcccceeeecccccccccccHHHhh-ccCCceEEEecccHhhhhh
Confidence            0                    01134689999999999999999999999999999999 9999999999999999996

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=1.3e-34  Score=242.61  Aligned_cols=139  Identities=26%  Similarity=0.253  Sum_probs=122.3

Q ss_pred             chHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC-----CccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       114 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .+|||++++++|++.|++.++++.++++.|..     ..++++.|+++||||+|+||+.+|+++++|||+|++||+....
T Consensus         3 ~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   82 (191)
T d1gdha1           3 VATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRAS   82 (191)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCC
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhccccccccccccc
Confidence            57999999999999999999999999999963     2578999999999999999999999999999999999987654


Q ss_pred             ccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCcc
Q 024297          189 HSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVS  268 (269)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vd  268 (269)
                      ....                ........+++++++++||+|++|+|+|++|+++||++.|+ .||+|++|||+|||++||
T Consensus        83 ~~~~----------------~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~-~mk~~a~lIN~sRG~ivd  145 (191)
T d1gdha1          83 SSDE----------------ASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIK-SLPQGAIVVNTARGDLVD  145 (191)
T ss_dssp             HHHH----------------HHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHT-TSCTTEEEEECSCGGGBC
T ss_pred             cchh----------------hcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhh-CcCCccEEEecCCccchh
Confidence            2110                11111134789999999999999999999999999999999 999999999999999999


Q ss_pred             C
Q 024297          269 F  269 (269)
Q Consensus       269 e  269 (269)
                      |
T Consensus       146 e  146 (191)
T d1gdha1         146 N  146 (191)
T ss_dssp             H
T ss_pred             h
Confidence            6

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-34  Score=241.50  Aligned_cols=137  Identities=21%  Similarity=0.169  Sum_probs=121.7

Q ss_pred             CcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC--ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCc
Q 024297          112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (269)
Q Consensus       112 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~  189 (269)
                      |+++||||+++++|++.|+++.+++.++++.|...  .+.++.+++|||+|+|.||+.+|+++++|||+|++||+.....
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~   80 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP   80 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccccccccccceEEEEeecccchhhhhhhcccccceEeeccccccch
Confidence            57899999999999999999999999999999754  4578999999999999999999999999999999999865431


Q ss_pred             cccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          190 SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      .                    .......++++++++||+|++|+|+|++|+++||++.|+ +||++++|||+|||++|||
T Consensus        81 ~--------------------~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~-~mk~~a~lIN~aRG~lvde  139 (188)
T d1sc6a1          81 L--------------------GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEIS-LMKPGSLLINASRGTVVDI  139 (188)
T ss_dssp             C--------------------TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHH-HSCTTEEEEECSCSSSBCH
T ss_pred             h--------------------hhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHh-hCCCCCEEEEcCcHHhhhh
Confidence            1                    111134689999999999999999999999999999999 9999999999999999996

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=1.7e-34  Score=239.90  Aligned_cols=134  Identities=22%  Similarity=0.258  Sum_probs=121.0

Q ss_pred             cchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC-ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccc
Q 024297          113 AASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP-TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ  191 (269)
Q Consensus       113 ~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~-~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~  191 (269)
                      |++||||+++++|++.|++..+++.++++.|... ....+.|++|||||+|.||+.+|+++++|||+|++||+++.... 
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~~~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~~-   79 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGP-   79 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSCCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSS-
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCcccCceEEEeccccccccceeeeeccccccccccccccccc-
Confidence            4789999999999999999999999999999764 33579999999999999999999999999999999998764310 


Q ss_pred             cccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          192 VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                                        .   ....++++++++||+|++|+|+|++|+++||++.|+ .||+|++|||+|||++|||
T Consensus        80 ------------------~---~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~-~mk~~ailIN~~RG~ivd~  135 (181)
T d1qp8a1          80 ------------------W---RFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLA-LMAEDAVFVNVGRAEVLDR  135 (181)
T ss_dssp             ------------------S---CCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHT-TSCTTCEEEECSCGGGBCH
T ss_pred             ------------------e---eeeechhhhhhccchhhcccccccccccccccceee-eccccceEEeccccccccc
Confidence                              0   123689999999999999999999999999999999 9999999999999999996

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=9.2e-34  Score=236.87  Aligned_cols=138  Identities=20%  Similarity=0.186  Sum_probs=121.6

Q ss_pred             hHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC----CccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcc
Q 024297          115 SCAELTIYLMLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS  190 (269)
Q Consensus       115 ~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~----~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~  190 (269)
                      +||||+++++|++.|++..+++.++++.|..    ..+.++.|++|||+|+|+||+++|++|++|||+|.+|++...+..
T Consensus         2 sVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~   81 (188)
T d2naca1           2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES   81 (188)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHH
T ss_pred             cHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcccCCcceeccccceeeccccccchhhhhhhhccCceEEEEeecccccc
Confidence            6999999999999999999999999999974    246789999999999999999999999999999999998765421


Q ss_pred             ccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCccC
Q 024297          191 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVSF  269 (269)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vde  269 (269)
                      ..                .........++++++++||+|++|+|+|++|+++||++.|+ +||+|++|||+|||++|||
T Consensus        82 ~~----------------~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~-~mk~ga~lIN~aRG~ivd~  143 (188)
T d2naca1          82 VE----------------KELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLK-LFKRGAYIVNTARGKLCDR  143 (188)
T ss_dssp             HH----------------HHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHT-TSCTTEEEEECSCGGGBCH
T ss_pred             cc----------------ccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHH-hCCCCCEEEecCchhhhhH
Confidence            10                00011135789999999999999999999999999999999 9999999999999999996

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.89  E-value=2.9e-24  Score=168.57  Aligned_cols=127  Identities=17%  Similarity=0.186  Sum_probs=104.3

Q ss_pred             CcceEEEeCCCCCCchhhHHHHHhcCCCeEEee-CCCCChhhhcCCceEEEEe-CCCCCHHHHhcCCCceEEEEccccCC
Q 024297           11 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLE   88 (269)
Q Consensus        11 ~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~d   88 (269)
                      +|+|||++++..+...    +.+++.-++.+.. .+.+++.+.++++|+++++ ..+++++.++.+|+||+|++.|+|+|
T Consensus         1 sMpkvli~~~~~~~~~----~~L~~~~~v~~~~~~~~~el~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d   76 (130)
T d1ygya2           1 SLPVVLIADKLAPSTV----AALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLD   76 (130)
T ss_dssp             CCCEEEECSSCCGGGG----TTSCSSSEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCCT
T ss_pred             CCCEEEEECCCCHHHH----HHHhCCcEEEECCCCCHHHHHHHcCCCEEEEEcCcccchHHHHhhcccceEEeeeccccc
Confidence            5899999998655432    2344332333332 3456778889999988774 56899999999999999999999999


Q ss_pred             ccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCC
Q 024297           89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG  144 (269)
Q Consensus        89 ~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~  144 (269)
                      +||+++|+++||.|+|+|++   ++.+|||++++++|++.|++..+.+.+|++.|-
T Consensus        77 ~IDl~~~~~~gI~V~n~p~~---~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~~  129 (130)
T d1ygya2          77 NVDVDAATARGVLVVNAPTS---ASTAEAQDRAGTDVAESVRLALAGEFVPDAVNV  129 (130)
T ss_dssp             TBCHHHHHHTTCEEECCTTS---SCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCSC
T ss_pred             chhHHHHHHCCceEEecCCC---CcHHHHHHHHHHHHHHHhhHHHHhhhcccCccC
Confidence            99999999999999999998   789999999999999999998877777777663

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.86  E-value=1.9e-24  Score=167.41  Aligned_cols=121  Identities=17%  Similarity=0.219  Sum_probs=97.5

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEeeCCCCChhhhcCCceEEEEeCCCCCHHHHhcCCCceEEEEccccCCccch
Q 024297           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDI   92 (269)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~   92 (269)
                      |||++..+..+   + .++.++.+.  ++..  .    ..++++|++++  ++++++.++++|+||||++.++|+||+|+
T Consensus         1 Mki~v~~~lp~---e-~~e~L~~~~--~v~~--~----~d~~~~d~~l~--~~~~~~~l~~~~~Lk~i~~~~aG~D~i~~   66 (121)
T d1qp8a2           1 MELYVNFELPP---E-AEEELRKYF--KIVR--G----GDLGNVEAALV--SRITAEELAKMPRLKFIQVVTAGLDHLPW   66 (121)
T ss_dssp             CEEECCSCCCH---H-HHHHHHTTC--EEEC--S----SCCTTBCCCCB--SCCCHHHHHHCTTCCCEEBSSSCCTTSCC
T ss_pred             CEEEEeCCCCH---H-HHHHhhhcc--eEee--c----ccccccceeee--eccCHHHHhcCCCceEEEecccCcCCCCH
Confidence            68888888532   2 234443321  2221  1    22567887765  68999999999999999999999999999


Q ss_pred             hhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHh
Q 024297           93 NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL  172 (269)
Q Consensus        93 ~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l  172 (269)
                      +.++ +||.|+|++|+   |+.+||||+++++|++.|+                         ++|+|+|+||+++|+++
T Consensus        67 ~~~~-~~i~v~n~~g~---~~~~vae~~~~~il~~~r~-------------------------l~i~G~G~iG~~iA~r~  117 (121)
T d1qp8a2          67 ESIP-PHVTVAGNAGS---NGYGNERVWRQMVMEAVRN-------------------------LITYATGGRPRNIAKRE  117 (121)
T ss_dssp             TTSC-TTSCEECCCSS---SSSSCHHHHHHHHHHHHHH-------------------------HHHHHTTSCCSCBCCGG
T ss_pred             HHhc-cCeEEEECCCC---ChHHHHHHHHHHHHHhcCC-------------------------EEEEcCCHHHHHHHHHH
Confidence            9884 69999999998   8899999999999999984                         57999999999999999


Q ss_pred             ccCC
Q 024297          173 RPFG  176 (269)
Q Consensus       173 ~~~G  176 (269)
                      ++||
T Consensus       118 ~a~G  121 (121)
T d1qp8a2         118 DYIG  121 (121)
T ss_dssp             GTC-
T ss_pred             HhcC
Confidence            9998

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.83  E-value=1.4e-20  Score=147.39  Aligned_cols=117  Identities=11%  Similarity=0.227  Sum_probs=96.6

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEeeC---CCCChhhhcCCceEEEE-eCCCCCHHHHhcCC--CceEEEEcccc
Q 024297           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV---PISDVPDVIANYHLCVV-KTMRLDSNCISRAN--QMKLIMQFGVG   86 (269)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~dv~i~-~~~~~~~~~l~~~~--~Lk~I~~~~aG   86 (269)
                      |||+++.. .+.+.++++++.+.+ ++++...   ..++..+.++++|++++ ...++++++++++|  +||+|+..|+|
T Consensus         1 MKIl~~~~-~~~e~~~l~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~~vG   78 (131)
T d1dxya2           1 MKIIAYGA-RVDEIQYFKQWAKDT-GNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVG   78 (131)
T ss_dssp             CEEEECSC-CTTTHHHHHHHHHHH-CCEEEECSSCCCTTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSC
T ss_pred             CEEEEEec-CcCcHHHHHHHHHHc-CeEEEEcCCCCCHHHHHHhcCCCEEEEecCCCCCHHHHhhcccCCeEEEEEcccc
Confidence            78988865 355567777777655 3344332   34677788899997766 45789999999865  89999999999


Q ss_pred             CCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHH
Q 024297           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM  134 (269)
Q Consensus        87 ~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~  134 (269)
                      +||+|+++++++||+|+|+|++   ++.+|||++++++|++.|++.+.
T Consensus        79 ~d~ID~~~a~~~gI~V~n~P~~---~~~aVAE~~~~~~l~l~R~l~~~  123 (131)
T d1dxya2          79 TDNIDMTAMKQYGIRLSNVPAY---TETAVHNMVYFSLQHLVDFLTKG  123 (131)
T ss_dssp             CTTBCHHHHHHTTCEEECCTTS---SHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cccccccccccceEEEEeCCCC---CchhHHHHHHHHHHHHHcchHHH
Confidence            9999999999999999999999   77999999999999999998764

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=3.4e-21  Score=151.10  Aligned_cols=116  Identities=22%  Similarity=0.282  Sum_probs=91.3

Q ss_pred             CCCcceEEEeCCCCCCchhhHHHHHhcCC--CeEEe--eCCCCChhhhcCCceEEEEe-CCCCCHHHHhcCCCceEEEEc
Q 024297            9 DKNITRVLFCGPHFPASHNYTKEYLQNYP--SIQVD--VVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQF   83 (269)
Q Consensus         9 ~~~~~~vl~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~~~Lk~I~~~   83 (269)
                      ++++||||++++.++..    .+.+++..  .++..  ..+++++.+.++++|++++. ..++++++++.+|+||+|+.+
T Consensus         1 ek~kmKILv~d~i~~~a----~~~L~~~g~~~v~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~i~~~p~Lk~I~~~   76 (132)
T d1sc6a2           1 EKDKIKFLLVEGVHQKA----LESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAF   76 (132)
T ss_dssp             CCSSCCEEECSCCCHHH----HHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEEC
T ss_pred             CCCCCEEEEECCCCHHH----HHHHHhCCCEEEEeCCCCCCHHHHHHhhcCCcEEEEecccccChhhhhccccceeEEEe
Confidence            46889999999975542    23343322  22222  23566778899999988774 568999999999999999999


Q ss_pred             cccCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcH
Q 024297           84 GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQ  131 (269)
Q Consensus        84 ~aG~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~  131 (269)
                      |+|+|+||+++|+++||+|+|+|++   ++.+|||++++++++..|++
T Consensus        77 gvG~D~IDl~aa~~~gI~V~ntp~~---~~~svAe~~~lml~~~~~~~  121 (132)
T d1sc6a2          77 AIGTNQVDLDAAAKRGIPVFNAPFS---STQEAQENIGLEVAGKLIKY  121 (132)
T ss_dssp             SSCCTTBCHHHHHHTTCCEECCTTT---CSHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCHHHHHhCCCEEEECCCC---chhHHHHHHHHHHHHHhhHH
Confidence            9999999999999999999999998   77999998776665544444

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.79  E-value=1.9e-19  Score=141.45  Aligned_cols=121  Identities=14%  Similarity=0.202  Sum_probs=99.9

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEeeCC---CCChhhhcCCceEEEE-eCCCCCHHHHhcC--CCceEEEEcccc
Q 024297           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVV-KTMRLDSNCISRA--NQMKLIMQFGVG   86 (269)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~dv~i~-~~~~~~~~~l~~~--~~Lk~I~~~~aG   86 (269)
                      .||++.... +.+.++++++.+.++++++...+   .+++.+.++++|++++ ...++++++++.+  ++||+|++.|+|
T Consensus         1 ~KI~~f~~~-~~e~~~~e~~~~~~~~v~v~~~~~~~~~e~~~~~~~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~vG   79 (134)
T d1j4aa2           1 TKIFAYAIR-EDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVG   79 (134)
T ss_dssp             CEEEECSCC-GGGHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSC
T ss_pred             CeEEEEecc-cccHHHHHHHHHhCCCEEEEECCCCCCHHHHHHhcCCCEEEEecCCCcCHHHHhhhcccCeeEEEEccCC
Confidence            378888664 56778889999998888887543   3567788899998776 4688999999975  479999999999


Q ss_pred             CCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCC
Q 024297           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKL  143 (269)
Q Consensus        87 ~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w  143 (269)
                      +||||+++++++||+|+|+|++      ++||+++++||++.|+++.   .+.+++|
T Consensus        80 ~d~ID~~aa~~~gI~V~N~P~~------svae~a~~~ml~l~r~~~~---~~~~~k~  127 (134)
T d1j4aa2          80 VDNIDMAKAKELGFQITNVPVY------SYTTHAVRNMVVKAFDNNL---ELVEGKE  127 (134)
T ss_dssp             CTTBCHHHHHHTTCEEECCCCS------CCBHHHHHHHHHHHHHHHH---HHHTTCC
T ss_pred             cCccCHHHHHhCCeEEEECCCC------cHHHHHHHHHHHHHHHHhH---HHhhhhc
Confidence            9999999999999999999986      3799999999999998754   4444443

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.77  E-value=1.3e-19  Score=141.58  Aligned_cols=111  Identities=14%  Similarity=0.239  Sum_probs=85.2

Q ss_pred             cceEEEeCCCCCCchhhHHHHHhcCCCeEEee----CCCCChhhhcCCceEEEEe-CCCCCHHHHhcCC-CceEEEEccc
Q 024297           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV----VPISDVPDVIANYHLCVVK-TMRLDSNCISRAN-QMKLIMQFGV   85 (269)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~dv~i~~-~~~~~~~~l~~~~-~Lk~I~~~~a   85 (269)
                      ++|||++.+..+   ..++.+.+.| ++.+..    .+.+++.+.++++|+++++ ..++++++++++| +||+|+++|+
T Consensus         1 K~kVlit~~~~~---~~~~~l~~~~-~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~gv   76 (129)
T d1gdha2           1 KKKILITWPLPE---AAMARARESY-DVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSI   76 (129)
T ss_dssp             CCEEEESSCCCH---HHHHHHHTTS-EEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESS
T ss_pred             CCEEEEeCCCCH---HHHHHHHcCC-cEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeeeeccc
Confidence            589999988533   2333333333 333322    2345677888999987764 5799999999997 7999999999


Q ss_pred             cCCccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhh
Q 024297           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR  129 (269)
Q Consensus        86 G~d~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R  129 (269)
                      |+||+|+++++++||+|+|+||+   ++.+|||+++.+++.+.+
T Consensus        77 G~d~ID~~~a~~~gI~V~ntpg~---~~~aVAE~A~~~~~l~~~  117 (129)
T d1gdha2          77 GFDHIDLDACKARGIKVGNAPHG---ATQAREDMAHQANDLIDA  117 (129)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCS---BHHHHHHHHHHHHHHHHH
T ss_pred             CCccccHHHHHhCCCEEEECCCC---CchHHHHHHHHHHHHHHH
Confidence            99999999999999999999998   889999976655555444

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.75  E-value=1.3e-18  Score=136.23  Aligned_cols=119  Identities=14%  Similarity=0.245  Sum_probs=91.7

Q ss_pred             cceEEEeCCCCCCchhhHHHHHhcCCCeEEee-CCCCChhh-hcCCceEEEE-eCCCCCHHHHhcCCCceEEEEccccCC
Q 024297           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPD-VIANYHLCVV-KTMRLDSNCISRANQMKLIMQFGVGLE   88 (269)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~dv~i~-~~~~~~~~~l~~~~~Lk~I~~~~aG~d   88 (269)
                      ||+|++.+.....   .....++.+..+.+.. .+.+++.+ .+.+++.+++ ...+++++.++++|+||+|+..|+|+|
T Consensus         1 mP~v~~ld~~d~~---~e~~~L~~~~~v~~~~~~s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~~~Lk~I~~~g~G~d   77 (133)
T d1mx3a2           1 MPLVALLDGRDCT---VEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFD   77 (133)
T ss_dssp             CCEEEESSCSCCT---TTHHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSCCT
T ss_pred             CCEEEEecCCcch---hhHHHhcccceEEEecCCChHHHHHHHhccCcEEEEEeCCCcCHHHHhhCCCCeEEEEcCCCcc
Confidence            5778888764222   2245666665555432 33444443 4556775555 468999999999999999999999999


Q ss_pred             ccchhhHhcCCcEEEecCCCCCCCcchHHHHHHHHHHHHhhcHHHHHHH
Q 024297           89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMA  137 (269)
Q Consensus        89 ~id~~~~~~~gI~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~  137 (269)
                      |+|+++++++||.|+|+|++   +. ++|||+++++|++.|++++..+.
T Consensus        78 ~iD~~~~~~~gI~v~n~p~~---~~-~vAE~a~~lil~~~R~i~~a~~g  122 (133)
T d1mx3a2          78 NIDIKSAGDLGIAVCNVPAA---SV-YSEQASIEMREEAAREIRRAITG  122 (133)
T ss_dssp             TBCHHHHHHTTCEEECCCST---TH-CCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cEeeeeheeCCEEEEcCCCC---Cc-hhHHHHHHHHHHHHhhHHHHHhc
Confidence            99999999999999999997   54 57999999999999999876443

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.75  E-value=2.8e-19  Score=145.76  Aligned_cols=111  Identities=19%  Similarity=0.258  Sum_probs=91.2

Q ss_pred             HHHHHhcCCCeEEeeC-----CCCChhhhcCCceEEEEe---CCCCCHHHHhcCCCceEEEEccccCCccchhhHhcCCc
Q 024297           29 TKEYLQNYPSIQVDVV-----PISDVPDVIANYHLCVVK---TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGI  100 (269)
Q Consensus        29 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~dv~i~~---~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI  100 (269)
                      +++++++. ++++...     +.+++.+.+.++|++++.   ..++++|.|+++|+||+|+..++|+||+|+++++++||
T Consensus        59 lr~~Le~~-GhelV~~sd~~~~~~el~k~l~DADivI~~pf~~~~lt~e~i~~ap~LKlI~~~g~G~D~VDl~aa~e~gI  137 (186)
T d2naca2          59 LRKYLESN-GHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNV  137 (186)
T ss_dssp             CHHHHHHT-TCEEEEESCCSSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTC
T ss_pred             HHHHHHHC-CCEEEEecCCCCChHHHHhhcccCCEEEEecccccccCHHHHhcCccceEEEEeccCCccccHHHHHhCCC
Confidence            47777665 4454432     234567889999999985   46899999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCCcchHHHHH--------HHHHHHHhhcHHHHHHHHHhCCC
Q 024297          101 KVARIPGDVTGNAASCAELT--------IYLMLGLLRKQNEMRMAIEQKKL  143 (269)
Q Consensus       101 ~v~n~~~~~~~~~~~vAE~~--------l~~~L~~~R~~~~~~~~~~~~~w  143 (269)
                      .|+|+||+   |+.+||||+        +++++...|++...+..+++|+|
T Consensus       138 ~V~n~pg~---n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~  185 (186)
T d2naca2         138 TVAEVTYC---NSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL  185 (186)
T ss_dssp             EEEECTTT---THCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEE
T ss_pred             EEEECCCc---CcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccc
Confidence            99999999   889999999        77777778887666655555555

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.5e-15  Score=121.84  Aligned_cols=94  Identities=19%  Similarity=0.209  Sum_probs=77.9

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      +..+.||+++|+|||.||+.+|+++++|||+|+++++.+.+..++                 .-.-.....++++++.+|
T Consensus        19 ~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A-----------------~~dG~~v~~~~~a~~~ad   81 (163)
T d1li4a1          19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQA-----------------AMEGYEVTTMDEACQEGN   81 (163)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------------HHTTCEECCHHHHTTTCS
T ss_pred             CceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHh-----------------hcCceEeeehhhhhhhcc
Confidence            467999999999999999999999999999999999876442111                 011113468999999999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +++++.    .++++|+.+.|+ +||+|+++.|++.
T Consensus        82 ivvtaT----Gn~~vI~~eh~~-~MKdgaIL~N~Gh  112 (163)
T d1li4a1          82 IFVTTT----GCIDIILGRHFE-QMKDDAIVCNIGH  112 (163)
T ss_dssp             EEEECS----SCSCSBCHHHHT-TCCTTEEEEECSS
T ss_pred             EEEecC----CCccchhHHHHH-hccCCeEEEEecc
Confidence            988874    478999999999 9999999999974

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.35  E-value=6.8e-13  Score=105.73  Aligned_cols=96  Identities=20%  Similarity=0.177  Sum_probs=79.1

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      ...+.||++.|+|||.+|+.+|++|+++|++|++++..+-+..++.                 -+-....+++++++.+|
T Consensus        18 ~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~-----------------mdGf~v~~~~~a~~~aD   80 (163)
T d1v8ba1          18 DFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAV-----------------MEGFNVVTLDEIVDKGD   80 (163)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH-----------------TTTCEECCHHHHTTTCS
T ss_pred             CceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHH-----------------hcCCccCchhHccccCc
Confidence            3569999999999999999999999999999999997654421111                 11114578999999999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +++.+..    .+++|+.+.|. .||+|+++.|+|...
T Consensus        81 i~vTaTG----n~~vI~~~h~~-~MKdgaIl~N~GHfd  113 (163)
T d1v8ba1          81 FFITCTG----NVDVIKLEHLL-KMKNNAVVGNIGHFD  113 (163)
T ss_dssp             EEEECCS----SSSSBCHHHHT-TCCTTCEEEECSSTT
T ss_pred             EEEEcCC----CCccccHHHHH-HhhCCeEEEeccccc
Confidence            9999965    45799999999 999999999999764

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.25  E-value=1.3e-12  Score=104.57  Aligned_cols=92  Identities=16%  Similarity=0.234  Sum_probs=73.3

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEEEe
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~~  232 (269)
                      .+|||||+|.||+.+|++|...|++|++|||++++..                 ....... ...+..++++++|+|+++
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~-----------------~~~~~~~~~~~~~~e~~~~~d~ii~~   63 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIA-----------------DVIAAGAETASTAKAIAEQCDVIITM   63 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHH-----------------HHHHTTCEECSSHHHHHHHCSEEEEC
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhH-----------------HHHHhhhhhcccHHHHHhCCCeEEEE
Confidence            4799999999999999999999999999999865421                 1111111 346899999999999999


Q ss_pred             cCCCccccCcCC--HHHHhhhCCCCcEEEEccC
Q 024297          233 LSLNKQTVKLCS--SSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       233 lp~t~~t~~li~--~~~l~~~mk~ga~lIN~~R  263 (269)
                      +|..++.+.++.  ...+. .+++|.++|+++-
T Consensus        64 v~~~~~v~~v~~~~~~~~~-~~~~g~iiid~sT   95 (161)
T d1vpda2          64 LPNSPHVKEVALGENGIIE-GAKPGTVLIDMSS   95 (161)
T ss_dssp             CSSHHHHHHHHHSTTCHHH-HCCTTCEEEECSC
T ss_pred             cCCHHHHHHHHhCCcchhh-ccCCCCEEEECCC
Confidence            998888877652  33677 8999999999864

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.10  E-value=1.7e-11  Score=97.97  Aligned_cols=93  Identities=19%  Similarity=0.193  Sum_probs=72.2

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEEEe
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~~  232 (269)
                      ++|||||+|.||.++|++|...|++|.+|||+..+...                 ...... ...++.+++.++|+|+++
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~-----------------~~~~~~~~~~~~~e~~~~~diii~~   64 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDG-----------------LVAAGASAARSARDAVQGADVVISM   64 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHH-----------------HHHTTCEECSSHHHHHTSCSEEEEC
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhh-----------------hhhhhccccchhhhhccccCeeeec
Confidence            58999999999999999999999999999987654211                 111111 346789999999999999


Q ss_pred             cCCCccccCcCC--HHHHhhhCCCCcEEEEccCC
Q 024297          233 LSLNKQTVKLCS--SSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       233 lp~t~~t~~li~--~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +|..+..+.++.  ...+. .+++|.++|+++=.
T Consensus        65 v~~~~~~~~v~~~~~~~~~-~l~~g~iiid~st~   97 (162)
T d3cuma2          65 LPASQHVEGLYLDDDGLLA-HIAPGTLVLECSTI   97 (162)
T ss_dssp             CSCHHHHHHHHHSTTCHHH-HSCTTCEEEECSCC
T ss_pred             ccchhhHHHHHhccccccc-cCCCCCEEEECCCC
Confidence            998877666542  33566 89999999998743

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.02  E-value=2.2e-11  Score=97.29  Aligned_cols=92  Identities=20%  Similarity=0.283  Sum_probs=67.0

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l  233 (269)
                      .+|||||+|.||..+|+.|+..|.+|++|||+...... .       ...|.    .+   ...+..+.+++||+|++++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~-a-------~~~~~----~~---~~~~~~~~~~~~DiIilav   65 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEK-A-------VERQL----VD---EAGQDLSLLQTAKIIFLCT   65 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH-H-------HHTTS----CS---EEESCGGGGTTCSEEEECS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHH-H-------HHhhc----cc---eeeeecccccccccccccC
Confidence            47999999999999999999999999999987543111 0       01111    11   1122335789999999999


Q ss_pred             CCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          234 SLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       234 p~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |. .++..++++ ... .+++++++++++-
T Consensus        66 p~-~~~~~vl~~-l~~-~l~~~~iv~~~~s   92 (165)
T d2f1ka2          66 PI-QLILPTLEK-LIP-HLSPTAIVTDVAS   92 (165)
T ss_dssp             CH-HHHHHHHHH-HGG-GSCTTCEEEECCS
T ss_pred             cH-hhhhhhhhh-hhh-hcccccceeeccc
Confidence            94 467777754 566 8999999999863

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=98.93  E-value=1.6e-10  Score=93.39  Aligned_cols=102  Identities=11%  Similarity=0.110  Sum_probs=73.0

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEe
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~  232 (269)
                      .++|||||+|.||..+|++|...|++|++|||++++...-..        ++.............++.+.+..+|+++++
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~--------~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~   73 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA--------NEAKGTKVLGAHSLEEMVSKLKKPRRIILL   73 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHH--------TTTTTSSCEECSSHHHHHHHBCSSCEEEEC
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH--------hccccccccchhhhhhhhhhhcccceEEEe
Confidence            468999999999999999999999999999998765211100        000000000011234566778889999999


Q ss_pred             cCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          233 LSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       233 lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +|..+++...++ ..+. .+++|.++|+++-.
T Consensus        74 ~~~~~~v~~v~~-~l~~-~~~~g~iiid~sT~  103 (176)
T d2pgda2          74 VKAGQAVDNFIE-KLVP-LLDIGDIIIDGGNS  103 (176)
T ss_dssp             SCTTHHHHHHHH-HHHH-HCCTTCEEEECSCC
T ss_pred             cCchHHHHHHHH-HHHh-ccccCcEEEecCcc
Confidence            998887777654 4777 89999999998743

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.88  E-value=9.5e-10  Score=87.87  Aligned_cols=108  Identities=20%  Similarity=0.176  Sum_probs=79.0

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      ...-.+|.|||.|..|.+.++.++.+|++|.++|.+..+......     .+..    ...........+++.+++||+|
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~-----~~~~----~~~~~~~~~~~l~~~~~~aDiv   99 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLET-----LFGS----RVELLYSNSAEIETAVAEADLL   99 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-----HHGG----GSEEEECCHHHHHHHHHTCSEE
T ss_pred             CCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHH-----hhcc----cceeehhhhhhHHHhhccCcEE
Confidence            466789999999999999999999999999999987554211100     0000    0000011234689999999999


Q ss_pred             EEecCC-CccccCcCCHHHHhhhCCCCcEEEEcc--CCCCc
Q 024297          230 VCCLSL-NKQTVKLCSSSLSSKSMFFATYVVFMF--QGHGV  267 (269)
Q Consensus       230 v~~lp~-t~~t~~li~~~~l~~~mk~ga~lIN~~--RG~~v  267 (269)
                      |.++-. ...+-.+|+++.++ .||||+++|+++  .|..+
T Consensus       100 I~aalipG~~aP~lIt~~mv~-~Mk~GSVIVDvaidqGG~~  139 (168)
T d1pjca1         100 IGAVLVPGRRAPILVPASLVE-QMRTGSVIVDVAVDQGGCV  139 (168)
T ss_dssp             EECCCCTTSSCCCCBCHHHHT-TSCTTCEEEETTCTTCCSB
T ss_pred             EEeeecCCcccCeeecHHHHh-hcCCCcEEEEeecCCCCcc
Confidence            998642 44667899999999 999999999997  45443

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.85  E-value=1.8e-09  Score=85.85  Aligned_cols=104  Identities=20%  Similarity=0.323  Sum_probs=77.8

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      .++.+++|.|||+|.||+.+++.|...|+ +|++++|+..+......             ........++++.+.+.++|
T Consensus        20 ~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~-------------~~~~~~~~~~~~~~~l~~~D   86 (159)
T d1gpja2          20 GSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELAR-------------DLGGEAVRFDELVDHLARSD   86 (159)
T ss_dssp             SCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH-------------HHTCEECCGGGHHHHHHTCS
T ss_pred             CCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHH-------------hhhcccccchhHHHHhccCC
Confidence            36999999999999999999999999998 79999998655211110             11111224578999999999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCC-----CCcEEEEccCCCCcc
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMF-----FATYVVFMFQGHGVS  268 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk-----~ga~lIN~~RG~~vd  268 (269)
                      +|+++.+   ....+|+++.++..++     +..+||++|...-||
T Consensus        87 ivi~ats---s~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr~vd  129 (159)
T d1gpja2          87 VVVSATA---APHPVIHVDDVREALRKRDRRSPILIIDIANPRDVE  129 (159)
T ss_dssp             EEEECCS---SSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSCSBC
T ss_pred             EEEEecC---CCCccccHhhhHHHHHhcccCCCeEEEeecCCCCcC
Confidence            9999955   5568999988763332     345999999776665

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.80  E-value=3.3e-09  Score=83.56  Aligned_cols=89  Identities=16%  Similarity=0.285  Sum_probs=68.2

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv~  231 (269)
                      .+|||||+|+||+++++.|...|.+|++++|+.++..                 ....+++  ...+.++++.+||+|++
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~-----------------~l~~~~g~~~~~~~~~~~~~~dvIil   63 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSK-----------------EIAEQLALPYAMSHQDLIDQVDLVIL   63 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHH-----------------HHHHHHTCCBCSSHHHHHHTCSEEEE
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHH-----------------hhccccceeeechhhhhhhccceeee
Confidence            4799999999999999999999999999998765421                 1111222  33689999999999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      +++  |+   .+ .+.++ .++++..+|++.-|-.
T Consensus        64 avk--p~---~~-~~vl~-~l~~~~~iis~~agi~   91 (152)
T d2ahra2          64 GIK--PQ---LF-ETVLK-PLHFKQPIISMAAGIS   91 (152)
T ss_dssp             CSC--GG---GH-HHHHT-TSCCCSCEEECCTTCC
T ss_pred             ecc--hH---hH-HHHhh-hcccceeEeccccccc
Confidence            996  22   11 45677 8999999999887643

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.77  E-value=8.8e-09  Score=83.23  Aligned_cols=117  Identities=17%  Similarity=0.260  Sum_probs=75.8

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhh---cc--------ccccccccccC--CC
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV---KN--------GIIDDLVDEKG--CH  216 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~---~~--------~~~~~~~~~~~--~~  216 (269)
                      .+.--+|.|||.|..|.+.++.++++|++|.++|.+........+....|..   .+        |-..+...+..  ..
T Consensus        26 ~V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~  105 (183)
T d1l7da1          26 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  105 (183)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             CcCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence            4566799999999999999999999999999999877653221111000000   00        00000000000  11


Q ss_pred             CCHHHHHhhCCEEEEecCC-CccccCcCCHHHHhhhCCCCcEEEEcc--CCCCc
Q 024297          217 EDIFEFASKADVVVCCLSL-NKQTVKLCSSSLSSKSMFFATYVVFMF--QGHGV  267 (269)
Q Consensus       217 ~~l~ell~~aDvvv~~lp~-t~~t~~li~~~~l~~~mk~ga~lIN~~--RG~~v  267 (269)
                      +.+.+.+++||+|+.++-. ....-.+++++.++ .||||+++|+++  +|..+
T Consensus       106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~-~Mk~GSVIVDvaidqGGn~  158 (183)
T d1l7da1         106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVT-KMKPGSVIIDLAVEAGGNC  158 (183)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHT-TSCTTCEEEETTGGGTCSS
T ss_pred             HHHHHHHHhhhhheeeeecCCcccceeehHHHHH-hcCCCcEEEEEeecCCCcc
Confidence            2466778899999987532 23456789999999 999999999997  55543

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.74  E-value=4.7e-09  Score=82.22  Aligned_cols=79  Identities=22%  Similarity=0.238  Sum_probs=64.0

Q ss_pred             cCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       152 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      .=++|+||| +|.||+.+|+.|+..|++|.+||++...                             ..++.+..+|+++
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~-----------------------------~~~~~~~~~~~v~   58 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-----------------------------VAESILANADVVI   58 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-----------------------------GHHHHHTTCSEEE
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc-----------------------------ccchhhhhccccc
Confidence            346999999 9999999999999999999999986432                             3456788999999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +++|.. ++...+ .+.+. .+++++++++++
T Consensus        59 ~~~~~~-~~~~v~-~~~~~-~~~~~~iiiD~~   87 (152)
T d2pv7a2          59 VSVPIN-LTLETI-ERLKP-YLTENMLLADLT   87 (152)
T ss_dssp             ECSCGG-GHHHHH-HHHGG-GCCTTSEEEECC
T ss_pred             cccchh-hheeee-ecccc-cccCCceEEEec
Confidence            999843 444433 44677 899999999986

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.68  E-value=3.8e-09  Score=84.63  Aligned_cols=104  Identities=18%  Similarity=0.190  Sum_probs=66.7

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEEE
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVC  231 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~  231 (269)
                      .||++|||.|.+|..+|..|...|++|.+|+|++..............+..+  ........ ...++.+.++++|+|++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~e~~~~aD~iii   78 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPG--LAGTAHPDLLTSDIGLAVKDADVILI   78 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSS--CCEEECCSEEESCHHHHHTTCSEEEE
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhh--hhhhhhhhhhhhhhHhHhcCCCEEEE
Confidence            4899999999999999999999999999999865431110000000000000  00000111 23578999999999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      ++| +..++.++.. ... .++++++++-.
T Consensus        79 ~v~-~~~~~~~~~~-i~~-~l~~~~~iv~~  105 (184)
T d1bg6a2          79 VVP-AIHHASIAAN-IAS-YISEGQLIILN  105 (184)
T ss_dssp             CSC-GGGHHHHHHH-HGG-GCCTTCEEEES
T ss_pred             EEc-hhHHHHHHHH-hhh-ccCCCCEEEEe
Confidence            998 4455555433 445 88999987744

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.64  E-value=5.2e-09  Score=82.15  Aligned_cols=67  Identities=24%  Similarity=0.323  Sum_probs=51.6

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l  233 (269)
                      .+|||||+|+||+.+|+.|...|++|+++++...+....                .........+..+++.++|+|++++
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~----------------~~~~~~~~~~~~e~~~~~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIE----------------RARTVGVTETSEEDVYSCPVVISAV   64 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHH----------------HHHHHTCEECCHHHHHTSSEEEECS
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHH----------------hhhcccccccHHHHHhhcCeEEEEe
Confidence            479999999999999999999999999999866542111                1111112356789999999999999


Q ss_pred             CCC
Q 024297          234 SLN  236 (269)
Q Consensus       234 p~t  236 (269)
                      |..
T Consensus        65 ~~~   67 (152)
T d1i36a2          65 TPG   67 (152)
T ss_dssp             CGG
T ss_pred             cCc
Confidence            954

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.62  E-value=2.6e-09  Score=84.38  Aligned_cols=90  Identities=21%  Similarity=0.290  Sum_probs=65.2

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS  234 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp  234 (269)
                      ||||||+|.||..+|++|...|..| +++++.++...                 .........+..+.+.++|++++++|
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~i~~~~   63 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALR-----------------HQEEFGSEAVPLERVAEARVIFTCLP   63 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHH-----------------HHHHHCCEECCGGGGGGCSEEEECCS
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHH-----------------HHHHcCCcccccccccceeEEEeccc
Confidence            6999999999999999999888876 56665544211                 11111222333466779999999999


Q ss_pred             CCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          235 LNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       235 ~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      ..++..... ...+. .++++.++|+++-.
T Consensus        64 ~~~~v~~~~-~~l~~-~~~~~~~iid~sT~   91 (156)
T d2cvza2          64 TTREVYEVA-EALYP-YLREGTYWVDATSG   91 (156)
T ss_dssp             SHHHHHHHH-HHHTT-TCCTTEEEEECSCC
T ss_pred             chhhhhhhh-ccccc-cccccccccccccC
Confidence            777666554 44777 89999999998754

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.61  E-value=5.9e-09  Score=82.96  Aligned_cols=94  Identities=28%  Similarity=0.215  Sum_probs=63.7

Q ss_pred             CEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHH-HHHhhCCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF-EFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-ell~~aDvvv  230 (269)
                      |+|+|||+|.||..+|+.|+..|.  +|++||++.....        .+...+.++..      ..+.. .....+|+|+
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~--------~a~~~~~~~~~------~~~~~~~~~~~~dlIi   67 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESIS--------KAVDLGIIDEG------TTSIAKVEDFSPDFVM   67 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHH--------HHHHTTSCSEE------ESCGGGGGGTCCSEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHH--------HHHHhhcchhh------hhhhhhhhcccccccc
Confidence            479999999999999999998774  8999998754311        11111111111      12222 2335899999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +++|. .++..+++. ... .+++++++++++-.
T Consensus        68 la~p~-~~~~~vl~~-l~~-~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          68 LSSPV-RTFREIAKK-LSY-ILSEDATVTDQGSV   98 (171)
T ss_dssp             ECSCH-HHHHHHHHH-HHH-HSCTTCEEEECCSC
T ss_pred             ccCCc-hhhhhhhhh-hhc-cccccccccccccc
Confidence            99993 355555533 556 89999999999853

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.55  E-value=1.1e-08  Score=81.69  Aligned_cols=92  Identities=23%  Similarity=0.289  Sum_probs=70.5

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCE
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADV  228 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDv  228 (269)
                      -|.+|+|+|||||+-|++-|..|+..|.+|++--|...+..                 ....+.+ ...+++|+.+++|+
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~-----------------~~A~~~Gf~v~~~~eA~~~aDi   75 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATV-----------------AKAEAHGLKVADVKTAVAAADV   75 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHH-----------------HHHHHTTCEEECHHHHHHTCSE
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccH-----------------HHHhhhccccccHHHHhhhcCe
Confidence            47899999999999999999999999999999877654321                 1111122 45789999999999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEE
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVF  260 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN  260 (269)
                      |.+.+|.. ....+..++... .||+|+.+.-
T Consensus        76 im~L~PD~-~q~~vy~~~I~p-~lk~g~~L~F  105 (182)
T d1np3a2          76 VMILTPDE-FQGRLYKEEIEP-NLKKGATLAF  105 (182)
T ss_dssp             EEECSCHH-HHHHHHHHHTGG-GCCTTCEEEE
T ss_pred             eeeecchH-HHHHHHHHhhhh-hcCCCcEEEE
Confidence            99999933 334455566677 9999998763

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=98.52  E-value=3.1e-09  Score=83.26  Aligned_cols=86  Identities=12%  Similarity=0.023  Sum_probs=55.6

Q ss_pred             EEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHhhCCEEEEecC
Q 024297          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLS  234 (269)
Q Consensus       156 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDvvv~~lp  234 (269)
                      |||||+|+||+++++.|+.-+..+.+|+|+..+..                 .+....+ ...++.++++++|+|++++|
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~-----------------~l~~~~~~~~~~~~~~~~~~DiVil~v~   64 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRAR-----------------NLAEVYGGKAATLEKHPELNGVVFVIVP   64 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHH-----------------HHHHHTCCCCCSSCCCCC---CEEECSC
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhc-----------------chhhcccccccchhhhhccCcEEEEecc
Confidence            79999999999999999874444568998765521                 1222222 34567788999999999998


Q ss_pred             CCccccCcCCHHHHhhhC-CCCcEEEEccCCC
Q 024297          235 LNKQTVKLCSSSLSSKSM-FFATYVVFMFQGH  265 (269)
Q Consensus       235 ~t~~t~~li~~~~l~~~m-k~ga~lIN~~RG~  265 (269)
                      .. +.     .+.+. .+ +++.++|+++-+.
T Consensus        65 d~-~i-----~~v~~-~l~~~~~ivi~~s~~~   89 (153)
T d2i76a2          65 DR-YI-----KTVAN-HLNLGDAVLVHCSGFL   89 (153)
T ss_dssp             TT-TH-----HHHHT-TTCCSSCCEEECCSSS
T ss_pred             ch-hh-----hHHHh-hhcccceeeeecccch
Confidence            43 22     33555 55 4789999998654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.44  E-value=2.1e-08  Score=80.44  Aligned_cols=104  Identities=13%  Similarity=0.110  Sum_probs=68.1

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l  233 (269)
                      .+|||||+|.||..+|++|...|++|++|||++++.....+.......     ..........+.+...+..++.+...+
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPF-----AGNLKAFETMEAFAASLKKPRKALILV   76 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTT-----GGGEEECSCHHHHHHHBCSSCEEEECC
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCcccc-----ccchhhhhhhhHHHHhcccceEEEEee
Confidence            579999999999999999999999999999977652111100000000     000000111223445566889999999


Q ss_pred             CCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          234 SLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       234 p~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +........++. ... .++++.++|+++-.
T Consensus        77 ~~~~~~~~~~~~-~~~-~~~~~~iii~~st~  105 (178)
T d1pgja2          77 QAGAATDSTIEQ-LKK-VFEKGDILVDTGNA  105 (178)
T ss_dssp             CCSHHHHHHHHH-HHH-HCCTTCEEEECCCC
T ss_pred             cCcchhhhhhhh-hhh-hccccceecccCcc
Confidence            866665555543 566 79999999998754

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.42  E-value=9.6e-08  Score=78.52  Aligned_cols=94  Identities=17%  Similarity=0.199  Sum_probs=69.0

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHh-hCC
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS-KAD  227 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~-~aD  227 (269)
                      +|.|+||+|-|||++|+.+|+.|..+|++|+++|.....-.                  .....+ ...+.++++. +||
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~------------------~~~~~g~~~~~~~~~~~~~~D   85 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVA------------------HAVALGHTAVALEDVLSTPCD   85 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH------------------HHHHTTCEECCGGGGGGCCCS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHH------------------HHHhhcccccCccccccccce
Confidence            69999999999999999999999999999999997543210                  001111 2345566676 899


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCcc
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGVS  268 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~vd  268 (269)
                      +++-|     .+.+.||++... +++ -.+++--+-+++.+
T Consensus        86 I~iPc-----A~~~~I~~~~a~-~i~-ak~i~e~AN~p~~~  119 (201)
T d1c1da1          86 VFAPC-----AMGGVITTEVAR-TLD-CSVVAGAANNVIAD  119 (201)
T ss_dssp             EEEEC-----SCSCCBCHHHHH-HCC-CSEECCSCTTCBCS
T ss_pred             eeecc-----cccccccHHHHh-hhh-hheeeccCCCCcch
Confidence            98876     356889999999 887 34666666666543

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.35  E-value=4.7e-08  Score=72.84  Aligned_cols=97  Identities=12%  Similarity=0.121  Sum_probs=66.5

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      .-+++||+|+|+|.|.+|..-|+.|..+|++|+++++...+......       ..+.+ ......   . -++.+..++
T Consensus         7 ~l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~-------~~~~i-~~~~~~---~-~~~dl~~~~   74 (113)
T d1pjqa1           7 FCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWA-------NEGML-TLVEGP---F-DETLLDSCW   74 (113)
T ss_dssp             EECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHH-------TTTSC-EEEESS---C-CGGGGTTCS
T ss_pred             EEEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHH-------hcCCc-eeeccC---C-CHHHhCCCc
Confidence            35799999999999999999999999999999999976654221110       01110 011111   1 123467889


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +|+.+..     ..-+|.+..+ .+|+..++||++
T Consensus        75 lv~~at~-----d~~~n~~i~~-~a~~~~ilVNv~  103 (113)
T d1pjqa1          75 LAIAATD-----DDTVNQRVSD-AAESRRIFCNVV  103 (113)
T ss_dssp             EEEECCS-----CHHHHHHHHH-HHHHTTCEEEET
T ss_pred             EEeecCC-----CHHHHHHHHH-HHHHcCCEEEeC
Confidence            8887743     2455777777 888899999975

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.32  E-value=2.5e-08  Score=81.30  Aligned_cols=108  Identities=13%  Similarity=0.111  Sum_probs=66.4

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l  233 (269)
                      ++|+|||.|.+|.++|..|...|.+|..|+|+.+.............+..+.  .+........+++++++++|+|++++
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~--~l~~~i~~t~~l~~a~~~ad~iiiav   85 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGV--QLASNITFTSDVEKAYNGAEIILFVI   85 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTC--BCCTTEEEESCHHHHHTTCSCEEECS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhccccccccccc--ccccccccchhhhhccCCCCEEEEcC
Confidence            5799999999999999999999999999998643211100001111111111  11111112368999999999999999


Q ss_pred             CCCccccCcCCHHH---HhhhCCCCcEEEEccCC
Q 024297          234 SLNKQTVKLCSSSL---SSKSMFFATYVVFMFQG  264 (269)
Q Consensus       234 p~t~~t~~li~~~~---l~~~mk~ga~lIN~~RG  264 (269)
                      | +...+.++.+-.   -....+++..+|+++.|
T Consensus        86 P-s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          86 P-TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             C-HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             c-HHHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence            9 334444432210   01023567788888877

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=2.6e-06  Score=67.46  Aligned_cols=77  Identities=14%  Similarity=0.181  Sum_probs=65.5

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||+|.|||-+. +|+.++.+|...|++|+.++...                              .++.+.+++|
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t------------------------------~~l~~~~~~A   81 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT------------------------------KNLRHHVENA   81 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC------------------------------SCHHHHHHHC
T ss_pred             CcccccceEEEEeccccccHHHHHHHHHhhcccccccccc------------------------------chhHHHHhhh
Confidence            4679999999999998 99999999999999999886321                              4678889999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|+.++.-    .+++..+    .+|+|+++|++|
T Consensus        82 DivI~a~G~----p~~i~~~----~vk~g~vvIDvG  109 (166)
T d1b0aa1          82 DLLIVAVGK----PGFIPGD----WIKEGAIVIDVG  109 (166)
T ss_dssp             SEEEECSCC----TTCBCTT----TSCTTCEEEECC
T ss_pred             hHhhhhccC----ccccccc----ccCCCcEEEecC
Confidence            999999862    3777764    578999999987

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.32  E-value=2.2e-08  Score=78.45  Aligned_cols=89  Identities=21%  Similarity=0.295  Sum_probs=58.2

Q ss_pred             CEEEEEecCchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvvv  230 (269)
                      .+|||||+|+||+++++.|...| .+|.+++|+.++...                 +..+.+  ...+.++ +.++|+|+
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~-----------------l~~~~~~~~~~~~~~-v~~~Div~   62 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRER-----------------LEKELGVETSATLPE-LHSDDVLI   62 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHH-----------------HHHHTCCEEESSCCC-CCTTSEEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHH-----------------hhhhccccccccccc-ccccceEE
Confidence            47999999999999999887666 899999998654211                 111111  1123333 57899999


Q ss_pred             EecCCCccccCcCCHHHHhhhC-CCCcEEEEccCCCCc
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSM-FFATYVVFMFQGHGV  267 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~m-k~ga~lIN~~RG~~v  267 (269)
                      ++++. .+.     .+.++ .+ +.+..+|++.-|-.+
T Consensus        63 lavkP-~~~-----~~v~~-~l~~~~~~viS~~ag~~~   93 (152)
T d1yqga2          63 LAVKP-QDM-----EAACK-NIRTNGALVLSVAAGLSV   93 (152)
T ss_dssp             ECSCH-HHH-----HHHHT-TCCCTTCEEEECCTTCCH
T ss_pred             EecCH-HHH-----HHhHH-HHhhcccEEeecccCCCH
Confidence            99962 121     22344 33 356888888777543

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.29  E-value=3.6e-07  Score=75.21  Aligned_cols=96  Identities=20%  Similarity=0.199  Sum_probs=65.8

Q ss_pred             cccC-CEEEEEecCchHHHHHHHhcc------CCCEEEEEcCCCCCccccccccchhhhcccccccccccc-CCCCCHHH
Q 024297          150 TLLG-KTVFILGFGNIGVELAKRLRP------FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCHEDIFE  221 (269)
Q Consensus       150 ~l~g-~~vgIiG~G~iG~~~a~~l~~------~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~e  221 (269)
                      -+.| |+|+|||||+-|++-|..|+.      .|.+|++--|..++......            .+.+... ....+..|
T Consensus        40 ~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~------------~dGf~v~~~~v~~v~E  107 (226)
T d1qmga2          40 AFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEAR------------AAGFSEENGTLGDMWE  107 (226)
T ss_dssp             HTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH------------HTTCCGGGTCEEEHHH
T ss_pred             HhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHH------------HcCCccCCCcccCHHH
Confidence            3578 899999999999999999998      55777666554443211110            0111100 12347889


Q ss_pred             HHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEE
Q 024297          222 FASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVF  260 (269)
Q Consensus       222 ll~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN  260 (269)
                      +.++||+|.+.+|...+ ..+. ++... .||+|+.+.-
T Consensus       108 Av~~ADiVmiLlPDe~Q-~~vy-~~I~p-~Lk~G~~L~F  143 (226)
T d1qmga2         108 TISGSDLVLLLISDSAQ-ADNY-EKVFS-HMKPNSILGL  143 (226)
T ss_dssp             HHHTCSEEEECSCHHHH-HHHH-HHHHH-HSCTTCEEEE
T ss_pred             HHhhCCEEEEecchHHH-HHHH-HHHHH-hcCCCceeee
Confidence            99999999999995433 4455 45777 9999998764

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=3.4e-07  Score=71.61  Aligned_cols=99  Identities=19%  Similarity=0.268  Sum_probs=64.1

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEec
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~l  233 (269)
                      +||+|||.|.||..+|..|...|.+|..++|...+........     .++   ...... ...+..+.+..+|+|++++
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~-----~~~---~~~~~~-~~~~~~~~~~~~D~iii~v   71 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVE-----TDG---SIFNES-LTANDPDFLATSDLLLVTL   71 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEEC-----TTS---CEEEEE-EEESCHHHHHTCSEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhcccc-----CCc---cccccc-cccchhhhhcccceEEEee
Confidence            4899999999999999999999999999999776532111000     000   000000 1234457788999999999


Q ss_pred             CCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          234 SLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       234 p~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +. .++...+.. ... .+++++.++.+.-|
T Consensus        72 ka-~~~~~~~~~-l~~-~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          72 KA-WQVSDAVKS-LAS-TLPVTTPILLIHNG   99 (167)
T ss_dssp             CG-GGHHHHHHH-HHT-TSCTTSCEEEECSS
T ss_pred             cc-cchHHHHHh-hcc-ccCcccEEeeccCc
Confidence            84 455544322 334 66778877776443

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=5e-06  Score=66.09  Aligned_cols=77  Identities=13%  Similarity=0.149  Sum_probs=65.6

Q ss_pred             cccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.||+|.|||-+. +|+.+|.+|...|++|+.++...                              .++.+.+++|
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t------------------------------~~l~~~~~~a   83 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT------------------------------AHLDEEVNKG   83 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------------------------SSHHHHHTTC
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhccCceEEEeccc------------------------------ccHHHHHhhc
Confidence            5679999999999987 89999999999999999987532                              3577889999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|++++.-    .+++..+    ..|+|+++|++|
T Consensus        84 Divi~a~G~----~~~i~~~----~vk~g~iviDvg  111 (170)
T d1a4ia1          84 DILVVATGQ----PEMVKGE----WIKPGAIVIDCG  111 (170)
T ss_dssp             SEEEECCCC----TTCBCGG----GSCTTCEEEECC
T ss_pred             cchhhcccc----ccccccc----cccCCCeEeccC
Confidence            999999873    3677763    578999999998

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=7.1e-07  Score=63.90  Aligned_cols=39  Identities=23%  Similarity=0.315  Sum_probs=36.0

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      +++||+|+|+|+|..|+++|+.|...|++|+++|.+..+
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            578999999999999999999999999999999986654

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.14  E-value=4.3e-07  Score=72.98  Aligned_cols=105  Identities=18%  Similarity=0.155  Sum_probs=63.9

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcc-ccc-cccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS-QVS-CQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      ++|+|||.|.+|.++|..|...|.+|..|.|..++.. ... .......++...   ........++++++++++|+|++
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~ad~Ii~   77 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKL---NGVEIFWPEQLEKCLENAEVVLL   77 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCC---CSEEEECGGGHHHHHTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchh---ccccccccccHHHHHhccchhhc
Confidence            4899999999999999999999999999987433210 000 000000000000   00001124689999999999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      ++| +...+..+.+ ... .+++. .+|.+..|-
T Consensus        78 avp-s~~~~~~~~~-l~~-~l~~~-~ii~~tkg~  107 (180)
T d1txga2          78 GVS-TDGVLPVMSR-ILP-YLKDQ-YIVLISKGL  107 (180)
T ss_dssp             CSC-GGGHHHHHHH-HTT-TCCSC-EEEECCCSE
T ss_pred             ccc-hhhhHHHHHh-hcc-ccccc-eecccccCc
Confidence            999 4455555443 333 56555 555555663

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.05  E-value=1.3e-05  Score=63.75  Aligned_cols=107  Identities=15%  Similarity=0.184  Sum_probs=70.2

Q ss_pred             ccccccCCEEEEEecCch-HHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccccccc--CCCCCHHHHH
Q 024297          147 TGETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--GCHEDIFEFA  223 (269)
Q Consensus       147 ~~~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~ell  223 (269)
                      .|.++.||++.|||-+++ |+.+|.+|...|+.|+.++.+......   ...+....+    ......  ...+.+++..
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~lk~~~   95 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFT---RGESLKLNK----HHVEDLGEYSEDLLKKCS   95 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEE---SCCCSSCCC----CEEEEEEECCHHHHHHHH
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccc---cccceeeee----eccccccccchhHHhhcc
Confidence            466899999999998875 999999999999999998754221000   000000000    000001  1223488889


Q ss_pred             hhCCEEEEecCCCccccCc-CCHHHHhhhCCCCcEEEEccCCCCcc
Q 024297          224 SKADVVVCCLSLNKQTVKL-CSSSLSSKSMFFATYVVFMFQGHGVS  268 (269)
Q Consensus       224 ~~aDvvv~~lp~t~~t~~l-i~~~~l~~~mk~ga~lIN~~RG~~vd  268 (269)
                      .++|+|+.++|-.    ++ +..+    ..|+|+++||+|-....+
T Consensus        96 ~~aDIvIsavG~p----~~~i~~d----~ik~GavvIDvGi~~~~~  133 (171)
T d1edza1          96 LDSDVVITGVPSE----NYKFPTE----YIKEGAVCINFACTKNFS  133 (171)
T ss_dssp             HHCSEEEECCCCT----TCCBCTT----TSCTTEEEEECSSSCCBC
T ss_pred             ccCCEEEEccCCC----ccccChh----hcccCceEeecccccccc
Confidence            9999999999833    33 5553    568999999998655443

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=5.4e-07  Score=73.28  Aligned_cols=110  Identities=15%  Similarity=0.091  Sum_probs=69.7

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcccccc---ccchhhhccccc----------cccccccCCCCCHH
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC---QSSALAVKNGII----------DDLVDEKGCHEDIF  220 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~---~~~~~~~~~~~~----------~~~~~~~~~~~~l~  220 (269)
                      ++|+|||.|.||+.+|..+...|++|+.+|++++.......   .........+..          +..........++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~   84 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   84 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence            69999999999999999999999999999987643111100   000000000100          00001111346788


Q ss_pred             HHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          221 EFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       221 ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +.+++||+|+=++|-+.+.+.-+-++.=+ .++++++|....-+
T Consensus        85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~-~~~~~~ilasnTS~  127 (192)
T d1f0ya2          85 SVVHSTDLVVEAIVENLKVKNELFKRLDK-FAAEHTIFASNTSS  127 (192)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTT-TSCTTCEEEECCSS
T ss_pred             hhhcccceehhhcccchhHHHHHHHHHhh-hcccCceeeccCcc
Confidence            99999999999999776655433343333 68888888765443

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.97  E-value=1.9e-06  Score=65.25  Aligned_cols=77  Identities=14%  Similarity=0.298  Sum_probs=52.4

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH-HhhCCEEEEe
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDvvv~~  232 (269)
                      |++.|+|+|.+|+.+|+.|...|.+|+++|.+++........         +...........+.|.++ +.++|.|+++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~---------~~~~~~gd~~~~~~l~~a~i~~a~~vi~~   71 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY---------ATHAVIANATEENELLSLGIRNFEYVIVA   71 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT---------CSEEEECCTTCTTHHHHHTGGGCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh---------CCcceeeecccchhhhccCCccccEEEEE
Confidence            578999999999999999999999999999876542111110         001111111233456666 7899999999


Q ss_pred             cCCCccc
Q 024297          233 LSLNKQT  239 (269)
Q Consensus       233 lp~t~~t  239 (269)
                      +|...++
T Consensus        72 ~~~~~~~   78 (134)
T d2hmva1          72 IGANIQA   78 (134)
T ss_dssp             CCSCHHH
T ss_pred             cCchHHh
Confidence            9855443

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=5.8e-06  Score=61.17  Aligned_cols=39  Identities=31%  Similarity=0.479  Sum_probs=34.9

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ...+.||||||.|..|+.++..++.+|++|+++|++...
T Consensus         8 ~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2           8 RPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             STTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            345678999999999999999999999999999987765

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=8.8e-06  Score=65.09  Aligned_cols=113  Identities=15%  Similarity=0.093  Sum_probs=71.3

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.++.+++|.|+|.|..|++++..|...|+ +|+.++|+.+...........+....+. ...........++.+.+.++
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   91 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDC-VVTVTDLADQQAFAEALASA   91 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSC-EEEEEETTCHHHHHHHHHTC
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCc-ceEeeecccccchhhhhccc
Confidence            457899999999999999999999999998 7999999876422111000000000000 00011111234567788999


Q ss_pred             CEEEEecCCCccc---cCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          227 DVVVCCLSLNKQT---VKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       227 Dvvv~~lp~t~~t---~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      |+||++.|.....   ..++.  .+. .++++.+++++.-.
T Consensus        92 diiIN~Tp~G~~~~~~~~~~~--~~~-~~~~~~~v~Di~Y~  129 (182)
T d1vi2a1          92 DILTNGTKVGMKPLENESLVN--DIS-LLHPGLLVTECVYN  129 (182)
T ss_dssp             SEEEECSSTTSTTSCSCCSCC--CGG-GSCTTCEEEECCCS
T ss_pred             ceeccccCCccccccchhhhh--HHH-hhhcchhhHHhhcC
Confidence            9999999865432   22221  235 68889999988643

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.91  E-value=4.7e-06  Score=69.47  Aligned_cols=94  Identities=19%  Similarity=0.207  Sum_probs=65.8

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC-CCCCHHHHHh-hC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS-KA  226 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~-~a  226 (269)
                      .+|.|+||.|-|||++|+.+|+.|...|++|++.|.+...-                 .......+ ...+.++++. .|
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~-----------------~~~~~~~g~~~~~~~~~~~~~c   97 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAV-----------------SAAVAEEGADAVAPNAIYGVTC   97 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH-----------------HHHHHHHCCEECCGGGTTTCCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHH-----------------HHHHHhcCCcccCCcccccccc
Confidence            57999999999999999999999999999999998754321                 01111111 1233344444 89


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      ||++-|     ...+.||.+... .++- .+++-.+-.++
T Consensus        98 DIl~Pc-----A~~~~I~~~~~~-~l~a-k~Ive~ANn~~  130 (230)
T d1leha1          98 DIFAPC-----ALGAVLNDFTIP-QLKA-KVIAGSADNQL  130 (230)
T ss_dssp             SEEEEC-----SCSCCBSTTHHH-HCCC-SEECCSCSCCB
T ss_pred             cEeccc-----ccccccChHHhh-ccCc-cEEEecccCCC
Confidence            999988     466889998888 8873 35554443443

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.90  E-value=3.4e-06  Score=66.56  Aligned_cols=101  Identities=19%  Similarity=0.146  Sum_probs=66.1

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      -.|.+|.|+|.|.+|...++.++.+|++|++++++..+.....+        -| .+.........+..+......|+++
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~--------lG-a~~~i~~~~~~~~~~~~~~~~d~vi   96 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK--------MG-ADHYIATLEEGDWGEKYFDTFDLIV   96 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH--------HT-CSEEEEGGGTSCHHHHSCSCEEEEE
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhc--------cC-CcEEeeccchHHHHHhhhcccceEE
Confidence            36789999999999999999999999999999998765321110        11 0111111111122444555789999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      .++.....  ..++ ..++ .++++..++++|-.
T Consensus        97 ~~~~~~~~--~~~~-~~~~-~l~~~G~iv~~G~~  126 (168)
T d1piwa2          97 VCASSLTD--IDFN-IMPK-AMKVGGRIVSISIP  126 (168)
T ss_dssp             ECCSCSTT--CCTT-TGGG-GEEEEEEEEECCCC
T ss_pred             EEecCCcc--chHH-HHHH-HhhccceEEEeccc
Confidence            88763221  1123 3677 89999999999743

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.85  E-value=8.6e-06  Score=66.19  Aligned_cols=81  Identities=20%  Similarity=0.315  Sum_probs=51.3

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccccc---c---cCCCCCHHHHHhhCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD---E---KGCHEDIFEFASKAD  227 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~l~ell~~aD  227 (269)
                      ++|+|||+|.+|..+|..|...|++|++||.+...-...-....++. ..+. .+...   .   .....++.+++..||
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~-e~~~-~~~l~~~~~~~~~~~~~~~~~~i~~~d   78 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIV-EPGL-EALLQQGRQTGRLSGTTDFKKAVLDSD   78 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSC-CTTH-HHHHHHHHHTTCEEEESCHHHHHHTCS
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCccc-chhh-hhhhhhhhcccccccCCCHHHHHhhCC
Confidence            47999999999999999999999999999976432100000000000 0000 00000   0   012367899999999


Q ss_pred             EEEEecCCCc
Q 024297          228 VVVCCLSLNK  237 (269)
Q Consensus       228 vvv~~lp~t~  237 (269)
                      ++++|+| ||
T Consensus        79 ~i~i~Vp-TP   87 (202)
T d1mv8a2          79 VSFICVG-TP   87 (202)
T ss_dssp             EEEECCC-CC
T ss_pred             EEEEecC-cc
Confidence            9999999 54

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.81  E-value=6e-07  Score=72.59  Aligned_cols=110  Identities=14%  Similarity=0.057  Sum_probs=67.7

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcccccccc---chhhhccccccc-----cccccCCCCCHHHHHhh
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQS---SALAVKNGIIDD-----LVDEKGCHEDIFEFASK  225 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~~l~ell~~  225 (269)
                      ++|+|||.|.||+.+|..+...|++|+.||++.+.-.......   .......+....     .........++ +.+.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~   83 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN   83 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccc-ccccc
Confidence            5799999999999999999999999999998754311110000   000011111000     00000011222 34789


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      +|+|+-++|-+.+.+.=+-++.-+ .++++++|....-+-
T Consensus        84 adlViEav~E~l~~K~~lf~~l~~-~~~~~~IiaSnTS~l  122 (186)
T d1wdka3          84 VDLVVEAVVENPKVKQAVLAEVEN-HVREDAILASNTSTI  122 (186)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHT-TSCTTCEEEECCSSS
T ss_pred             cceeeeeecchHHHHHHHHHHHHh-hcCCCeeEEeccccc
Confidence            999999999887766544454445 789999988766543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.81  E-value=7.2e-06  Score=64.10  Aligned_cols=78  Identities=18%  Similarity=0.191  Sum_probs=52.9

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      ++|+|.|||.|.||+.+|+.|...|.+|+++||+..+.......       .+..............+++.+..+|+++.
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~i~   73 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAG-------VQHSTPISLDVNDDAALDAEVAKHDLVIS   73 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTT-------CTTEEEEECCTTCHHHHHHHHTTSSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhc-------ccccccccccccchhhhHhhhhccceeEe
Confidence            47999999999999999999999999999999987653211110       00000000111122356788889999999


Q ss_pred             ecCCC
Q 024297          232 CLSLN  236 (269)
Q Consensus       232 ~lp~t  236 (269)
                      +.|..
T Consensus        74 ~~~~~   78 (182)
T d1e5qa1          74 LIPYT   78 (182)
T ss_dssp             CSCGG
T ss_pred             eccch
Confidence            88743

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=6.1e-06  Score=65.30  Aligned_cols=101  Identities=16%  Similarity=0.141  Sum_probs=66.7

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHH-HHh
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFE-FAS  224 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~e-ll~  224 (269)
                      +..+.||+|.|+|.|..+++++..|...|++|++++|+.++......              .+....  ...++++ ...
T Consensus        13 ~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~--------------~~~~~~~~~~~~~~~~~~~   78 (170)
T d1nyta1          13 SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAK--------------LFAHTGSIQALSMDELEGH   78 (170)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH--------------HTGGGSSEEECCSGGGTTC
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHH--------------HHhhccccccccccccccc
Confidence            35688999999999999999999999999999999998765321111              000000  0111221 235


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      ++|+||++.|......  .....++ .++++++++++--.+
T Consensus        79 ~~dliIN~Tp~G~~~~--~~~~~~~-~~~~~~~v~D~vY~P  116 (170)
T d1nyta1          79 EFDLIINATSSGISGD--IPAIPSS-LIHPGIYCYDMFYQK  116 (170)
T ss_dssp             CCSEEEECCSCGGGTC--CCCCCGG-GCCTTCEEEESCCCS
T ss_pred             ccceeecccccCcccC--CCCCcHH-HhccCcEEEEeecCC
Confidence            7999999998764322  1222345 688889988875443

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.74  E-value=1.6e-05  Score=63.88  Aligned_cols=106  Identities=16%  Similarity=0.128  Sum_probs=69.2

Q ss_pred             cccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       148 ~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.+|+||++.|.| -|.||+++|+.|...|++|+.++|+.++.......   +. .+..............++++++.+.
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~~~d~~~~~~~~~~~~~i   93 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADS---VN-KRFKVNVTAAETADDASRAEAVKGA   93 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---HH-HHHTCCCEEEECCSHHHHHHHTTTC
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHH---HH-hccchhhhhhhcccHHHHHHHhcCc
Confidence            5789999999999 79999999999999999999999986542111110   00 0000000001111335678889999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      |+|+++.+...   ..++.+.++ .+..--++.++
T Consensus        94 Dilin~Ag~g~---~~~~~e~~~-~~~~~nv~~~~  124 (191)
T d1luaa1          94 HFVFTAGAIGL---ELLPQAAWQ-NESSIEIVADY  124 (191)
T ss_dssp             SEEEECCCTTC---CCBCHHHHH-TCTTCCEEEEC
T ss_pred             CeeeecCcccc---ccCCHHHHH-hhhcceeehhH
Confidence            99998865322   356777777 66655444443

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.67  E-value=7.3e-05  Score=62.49  Aligned_cols=102  Identities=23%  Similarity=0.168  Sum_probs=63.6

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccc---------------ccc
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL---------------VDE  212 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~  212 (269)
                      +.+|.|+||.|-|||++|+.+|+.|...|++|++++.....-          ..++|+..+.               ...
T Consensus        26 ~~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i----------~~~~Gld~~~l~~~~~~~~~~~~~~~~~   95 (242)
T d1v9la1          26 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVA----------YRKEGLNVELIQKNKGLTGPALVELFTT   95 (242)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEE----------ECTTCCCTHHHHHTTTSCHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccc----------cccccccHHHHHHHhhcchhhHHHhhhh
Confidence            357999999999999999999999999999999877432110          0001110000               000


Q ss_pred             -cC-C-CCCHHHHHh-hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297          213 -KG-C-HEDIFEFAS-KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       213 -~~-~-~~~l~ell~-~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                       .. . ..+-++++. .|||++-|.     ..+.|+.+... +++- .+++--+=+++
T Consensus        96 ~~~~~~~~~~~~i~~~~~DIliPcA-----~~~~I~~~~a~-~i~a-k~IvegAN~p~  146 (242)
T d1v9la1          96 KDNAEFVKNPDAIFKLDVDIFVPAA-----IENVIRGDNAG-LVKA-RLVVEGANGPT  146 (242)
T ss_dssp             TSCCCCCSSTTGGGGCCCSEEEECS-----CSSCBCTTTTT-TCCC-SEEECCSSSCB
T ss_pred             ccCceEeeCcchhccccccEEeecc-----hhccccHHHHH-hccc-CEEEecCCCCC
Confidence             00 1 112234444 899999884     55788888777 7763 45555554443

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=2.9e-05  Score=53.49  Aligned_cols=35  Identities=26%  Similarity=0.419  Sum_probs=32.5

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      |||||+|-|..|+.++.-...+|.+|.++|+....
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            69999999999999999999999999999986554

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.57  E-value=3.2e-05  Score=61.40  Aligned_cols=95  Identities=19%  Similarity=0.127  Sum_probs=60.5

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH----Hh-
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF----AS-  224 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~-  224 (269)
                      -.|.+|.|+|.|.||..+++.++.+|+ +|++++++..+.....+        -| ....+. . ...+..+.    .+ 
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~--------lG-a~~vi~-~-~~~~~~~~~~~i~~~   95 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE--------IG-ADLTLN-R-RETSVEERRKAIMDI   95 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH--------TT-CSEEEE-T-TTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCccchhheeccccccccccccccccccccccccc--------cc-ceEEEe-c-cccchHHHHHHHHHh
Confidence            468999999999999999999999998 89999987654211100        00 000110 0 11333332    21 


Q ss_pred             ----hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          225 ----KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       225 ----~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                          ..|+|+-++.. +.+   + +..++ .++++..++-+|
T Consensus        96 ~~~~g~Dvvid~vG~-~~~---~-~~a~~-~l~~~G~iv~~G  131 (182)
T d1vj0a2          96 THGRGADFILEATGD-SRA---L-LEGSE-LLRRGGFYSVAG  131 (182)
T ss_dssp             TTTSCEEEEEECSSC-TTH---H-HHHHH-HEEEEEEEEECC
T ss_pred             hCCCCceEEeecCCc-hhH---H-HHHHH-HhcCCCEEEEEe
Confidence                27999988763 221   1 34567 889998887775

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.54  E-value=0.00015  Score=61.97  Aligned_cols=136  Identities=15%  Similarity=0.135  Sum_probs=76.7

Q ss_pred             chHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccc--
Q 024297          114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ--  191 (269)
Q Consensus       114 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~--  191 (269)
                      .+++--+...+-.++++.......        ....+|.|+||.|-|||++|+.+|+.|...|++|++++.+...-..  
T Consensus         5 eATG~GV~~~~~~~l~~~~~~~~~--------gl~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~   76 (293)
T d1hwxa1           5 SATGRGVFHGIENFIENASYMSIL--------GMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPD   76 (293)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHH--------TCCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTT
T ss_pred             hHhHHHHHHHHHHHHHhcccchhc--------cCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhcccc
Confidence            445555555555555543221111        1235799999999999999999999999999999988643211000  


Q ss_pred             --cccccchhhhccccccccccccCCCCCHHHHHh-hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCCc
Q 024297          192 --VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHGV  267 (269)
Q Consensus       192 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~v  267 (269)
                        ....-..+...+|.+...   ......-++++. .|||++-|     .+.+.|+.+... .++- .+++--+-|++-
T Consensus        77 Gld~~~L~~~~~~~~~~~~~---~~~~~~~~~~~~~~~DIliPa-----A~~~~I~~~~a~-~l~a-k~I~EgAN~P~t  145 (293)
T d1hwxa1          77 GIDPKELEDFKLQHGTILGF---PKAKIYEGSILEVDCDILIPA-----ASEKQLTKSNAP-RVKA-KIIAEGANGPTT  145 (293)
T ss_dssp             CCCHHHHHHHHHTTSSSTTC---TTSCBCCSCGGGCCCSEEEEC-----SSSSCBCTTTGG-GCCC-SEEECCSSSCBC
T ss_pred             ccchHHHHHHHHHcCCeecc---cccccCCcccccCCccEEeec-----cccccccHHHHH-HHhh-CEEeccCCCCCC
Confidence              000000000011111000   000111123344 89999988     466888888888 7763 466666666653

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=6.5e-05  Score=60.44  Aligned_cols=76  Identities=16%  Similarity=0.136  Sum_probs=53.5

Q ss_pred             cCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       152 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      ..|||.|+| .|.+|+++++.|...|++|.++.|++.+......        .+ +.-...+....+++.+++..+|+|+
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~--------~~-~~~~~gD~~d~~~l~~al~~~d~vi   72 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGP--------RP-AHVVVGDVLQAADVDKTVAGQDAVI   72 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSC--------CC-SEEEESCTTSHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccc--------cc-cccccccccchhhHHHHhcCCCEEE
Confidence            468999999 6999999999999999999999997655221110        00 0111112223456888899999999


Q ss_pred             EecCCC
Q 024297          231 CCLSLN  236 (269)
Q Consensus       231 ~~lp~t  236 (269)
                      .++...
T Consensus        73 ~~~g~~   78 (205)
T d1hdoa_          73 VLLGTR   78 (205)
T ss_dssp             ECCCCT
T ss_pred             EEeccC
Confidence            988643

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.47  E-value=8.7e-05  Score=57.89  Aligned_cols=99  Identities=20%  Similarity=0.218  Sum_probs=62.6

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHH---HHHh---
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF---EFAS---  224 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---ell~---  224 (269)
                      -.|.+|.|+|.|.||...++.++.+|++|++++++..+.....+.        |. ...........+..   +.+.   
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~--------ga-~~~~~~~~~~~~~~~~~~~~~~~~   95 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC--------GA-DVTLVVDPAKEEESSIIERIRSAI   95 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT--------TC-SEEEECCTTTSCHHHHHHHHHHHS
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc--------CC-cEEEeccccccccchhhhhhhccc
Confidence            457799999999999999999999999999999876542111100        00 00000000112232   2222   


Q ss_pred             --hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          225 --KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       225 --~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                        .+|+++-+.. .+.   .+ ...++ .++++..++.+|-.
T Consensus        96 g~g~D~vid~~g-~~~---~~-~~a~~-~~~~~G~iv~~G~~  131 (170)
T d1e3ja2          96 GDLPNVTIDCSG-NEK---CI-TIGIN-ITRTGGTLMLVGMG  131 (170)
T ss_dssp             SSCCSEEEECSC-CHH---HH-HHHHH-HSCTTCEEEECSCC
T ss_pred             ccCCceeeecCC-ChH---HH-HHHHH-HHhcCCceEEEecC
Confidence              3799988875 222   22 33567 89999999998854

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=8.6e-05  Score=58.18  Aligned_cols=96  Identities=21%  Similarity=0.241  Sum_probs=62.1

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----  224 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----  224 (269)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++++++..+.....        .-| ++... .. ..++..+..+     
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~--------~~G-a~~~~-~~-~~~~~~~~~~~~~~~   93 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK--------EIG-ADLVL-QI-SKESPQEIARKVEGQ   93 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH--------HTT-CSEEE-EC-SSCCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHH--------HhC-Ccccc-cc-ccccccccccccccc
Confidence            356799999999999999999999999 8999998765421110        001 00000 00 1233333222     


Q ss_pred             ---hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 ---KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 ---~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                         .+|+++-++.. +.   .+ ...++ .+++|..++.+|-
T Consensus        94 ~g~g~Dvvid~~G~-~~---~~-~~a~~-~~~~gG~iv~~G~  129 (171)
T d1pl8a2          94 LGCKPEVTIECTGA-EA---SI-QAGIY-ATRSGGTLVLVGL  129 (171)
T ss_dssp             HTSCCSEEEECSCC-HH---HH-HHHHH-HSCTTCEEEECSC
T ss_pred             CCCCceEEEeccCC-ch---hH-HHHHH-HhcCCCEEEEEec
Confidence               47999999862 22   22 33677 8999999998874

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.42  E-value=2.2e-05  Score=62.35  Aligned_cols=108  Identities=13%  Similarity=0.074  Sum_probs=65.3

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      +.++.||+|.|+|.|..+++++..|...| +|++++|+.++.......   +.....  .... ......++...+..+|
T Consensus        13 ~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~---~~~~~~--~~~~-~~~~~~~~~~~~~~~d   85 (177)
T d1nvta1          13 IGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKE---IAEKLN--KKFG-EEVKFSGLDVDLDGVD   85 (177)
T ss_dssp             HCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHH---HHHHHT--CCHH-HHEEEECTTCCCTTCC
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHH---HHHhhc--hhhh-hhhhhhhhhhccchhh
Confidence            35699999999999999999999998888 999999986652211100   000000  0000 0001234555678899


Q ss_pred             EEEEecCCCcccc-CcCCHHHHhhhCCCCcEEEEccC
Q 024297          228 VVVCCLSLNKQTV-KLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       228 vvv~~lp~t~~t~-~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +++++.|...... ..-..-.+. .++++.+++++.-
T Consensus        86 liIn~tp~g~~~~~~~~~~~~~~-~~~~~~~v~D~~y  121 (177)
T d1nvta1          86 IIINATPIGMYPNIDVEPIVKAE-KLREDMVVMDLIY  121 (177)
T ss_dssp             EEEECSCTTCTTCCSSCCSSCST-TCCSSSEEEECCC
T ss_pred             hhccCCcccccccccccchhhhh-ccCcccceeeecC
Confidence            9999988643211 110111234 5677888887754

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.40  E-value=9.5e-05  Score=64.77  Aligned_cols=93  Identities=12%  Similarity=0.150  Sum_probs=66.8

Q ss_pred             CCEEEEEecCchHHHHHHHhc-cCCC-EEEEEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHHhhC
Q 024297          153 GKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKA  226 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~-~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~a  226 (269)
                      -++++|||.|..++.-++.+. -++. +|.+|+|++.+...-..             ......+    ...+++++++.|
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~-------------~l~~~~g~~v~~~~s~~eav~~A  194 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIA-------------NLKEYSGLTIRRASSVAEAVKGV  194 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHH-------------HHTTCTTCEEEECSSHHHHHTTC
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHH-------------hhhhccCCCceecCCHHHHHhcC
Confidence            369999999999998888765 4776 79999997654211110             0111111    247899999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |+|+.+.+ ++.+..+++.+    .+|||+.+..+|-
T Consensus       195 DIi~t~Ta-s~s~~Pv~~~~----~l~pG~hI~aiGs  226 (340)
T d1x7da_         195 DIITTVTA-DKAYATIITPD----MLEPGMHLNAVGG  226 (340)
T ss_dssp             SEEEECCC-CSSEEEEECGG----GCCTTCEEEECSC
T ss_pred             Cceeeccc-cCCCCcccchh----hcCCCCEEeeccc
Confidence            99999876 45566788873    6789999988863

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.30  E-value=0.00021  Score=56.77  Aligned_cols=100  Identities=13%  Similarity=0.197  Sum_probs=57.3

Q ss_pred             EEEEEecCchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhcccccc---ccccccC--CCCCHHHHHhhCCE
Q 024297          155 TVFILGFGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIID---DLVDEKG--CHEDIFEFASKADV  228 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~l~ell~~aDv  228 (269)
                      ||||.|||+||+.+++.+... +++|.+++...+......  ..-+....+...   ..+.+..  ....+.+++.++|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDi   80 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFI--AHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDI   80 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHH--HHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHH--hcccCcceeccCccceeccccceecCCchhhhhhcCCE
Confidence            799999999999999999865 679888765432211000  000000000000   1111111  23478899999999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+-|.|.      +.+++..+..++.|.-+|=.+
T Consensus        81 ViecTG~------f~~~e~a~~hl~~G~KvIi~~  108 (178)
T d1b7go1          81 VVDTTPN------GVGAQYKPIYLQLQRNAIFQG  108 (178)
T ss_dssp             EEECCST------THHHHHHHHHHHTTCEEEECT
T ss_pred             EEECCCC------cCCHHHHHHHHHcCCEEEEEC
Confidence            9999773      223444444566676555443

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=97.30  E-value=0.00015  Score=61.02  Aligned_cols=37  Identities=41%  Similarity=0.660  Sum_probs=33.7

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~  184 (269)
                      +.++.|+||.|=|||++|+.+|+.|...|++|++++.
T Consensus        31 ~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD   67 (255)
T d1bgva1          31 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSG   67 (255)
T ss_dssp             TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence            4679999999999999999999999999999987653

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.30  E-value=7.4e-05  Score=56.16  Aligned_cols=95  Identities=19%  Similarity=0.170  Sum_probs=56.2

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH-HhhCCEEEEe
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKADVVVCC  232 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDvvv~~  232 (269)
                      .+|.|+|+|.+|+.+|+.|...|.+|+++|.+++.-...... .+.       .-........+.|+++ ++++|.++.+
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~-~~~-------~vi~Gd~~~~~~l~~~~i~~a~~vv~~   72 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE-IDA-------LVINGDCTKIKTLEDAGIEDADMYIAV   72 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-CSS-------EEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh-hhh-------hhccCcccchhhhhhcChhhhhhhccc
Confidence            479999999999999999999999999999876432111000 000       0011111112234444 6789999998


Q ss_pred             cCCCccccCcCCHHHHhhhCCCCcEEE
Q 024297          233 LSLNKQTVKLCSSSLSSKSMFFATYVV  259 (269)
Q Consensus       233 lp~t~~t~~li~~~~l~~~mk~ga~lI  259 (269)
                      .+..+.  +++-....+ .+.+..+++
T Consensus        73 t~~d~~--N~~~~~~~k-~~~~~~iI~   96 (132)
T d1lssa_          73 TGKEEV--NLMSSLLAK-SYGINKTIA   96 (132)
T ss_dssp             CSCHHH--HHHHHHHHH-HTTCCCEEE
T ss_pred             CCcHHH--HHHHHHHHH-HcCCceEEE
Confidence            764322  333333444 566555543

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.29  E-value=7.6e-05  Score=58.72  Aligned_cols=64  Identities=20%  Similarity=0.322  Sum_probs=43.8

Q ss_pred             CEEEEEecCchHHHHHHHhccC-CCEEEE-EcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      -+|||+|+|.||+..++.++.. ++++++ ++++......                   .......++++++.+.|+|++
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~D~Vvi   64 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK-------------------TPVFDVADVDKHADDVDVLFL   64 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS-------------------SCEEEGGGGGGTTTTCSEEEE
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc-------------------cccccchhhhhhccccceEEE
Confidence            4799999999999999999986 788665 4444332110                   000022455666789999999


Q ss_pred             ecCCC
Q 024297          232 CLSLN  236 (269)
Q Consensus       232 ~lp~t  236 (269)
                      +.|..
T Consensus        65 ~tp~~   69 (170)
T d1f06a1          65 CMGSA   69 (170)
T ss_dssp             CSCTT
T ss_pred             eCCCc
Confidence            98854

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.28  E-value=0.00047  Score=57.31  Aligned_cols=101  Identities=26%  Similarity=0.348  Sum_probs=63.2

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhc-cCCCEEEEEcCCCCCccccccccchhhhcccccc-cc---------cccc-C-C
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAVKNGIID-DL---------VDEK-G-C  215 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~-~-~  215 (269)
                      .+|.|+||.|-|||++|..+|+.|. .+|++|+++..+...          ...++|+.. +.         ...+ + .
T Consensus        28 ~~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~----------i~~~~G~d~~~l~~~~~~~~~~~~~~~~~   97 (239)
T d1gtma1          28 DTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGG----------IYNPDGLNADEVLKWKNEHGSVKDFPGAT   97 (239)
T ss_dssp             SCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCE----------EEEEEEECHHHHHHHHHHHSSSTTCTTSE
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccc----------eecCCcCCHHHHHHHHHhccccccCCCCe
Confidence            3599999999999999999999885 689998887643211          000111100 00         0000 0 1


Q ss_pred             CCCHHHHHh-hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297          216 HEDIFEFAS-KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       216 ~~~l~ell~-~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      ..+-++++. +|||++-|.     +.+.|+.+... .++- .+++-.+=+++
T Consensus        98 ~~~~~~i~~~~~DIl~PcA-----~~~~I~~~~a~-~i~a-k~I~e~AN~p~  142 (239)
T d1gtma1          98 NITNEELLELEVDVLAPAA-----IEEVITKKNAD-NIKA-KIVAEVANGPV  142 (239)
T ss_dssp             EECHHHHHHSCCSEEEECS-----CSCCBCTTGGG-GCCC-SEEECCSSSCB
T ss_pred             eecccccccccccEEeecc-----ccccccHHHHH-hccc-cEEEecCCCCC
Confidence            224456666 999999884     56888888887 7753 35555544443

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=0.00021  Score=55.46  Aligned_cols=66  Identities=15%  Similarity=0.144  Sum_probs=45.2

Q ss_pred             CEEEEEecCchHHH-HHHHhccC-CCEEE-EEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCE
Q 024297          154 KTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV  228 (269)
Q Consensus       154 ~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDv  228 (269)
                      .+|||||+|.+|+. .+..++.. +++|. ++|++......                 ....+.  ..+++++++++.|+
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~D~   64 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALP-----------------ICESWRIPYADSLSSLAASCDA   64 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHH-----------------HHHHHTCCBCSSHHHHHTTCSE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhh-----------------hhhcccccccccchhhhhhccc
Confidence            37999999999986 56666654 77865 56666544211                 111111  34678999999999


Q ss_pred             EEEecCCC
Q 024297          229 VVCCLSLN  236 (269)
Q Consensus       229 vv~~lp~t  236 (269)
                      |+++.|..
T Consensus        65 V~I~tp~~   72 (164)
T d1tlta1          65 VFVHSSTA   72 (164)
T ss_dssp             EEECSCTT
T ss_pred             ccccccch
Confidence            99999843

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=5e-05  Score=59.47  Aligned_cols=97  Identities=15%  Similarity=0.208  Sum_probs=62.0

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      -.|.+|.|+|.|.+|...++.++.+|+++++++++..+......        -| .+.... ...........+..|+++
T Consensus        29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~--------lG-ad~~i~-~~~~~~~~~~~~~~D~vi   98 (168)
T d1uufa2          29 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA--------LG-ADEVVN-SRNADEMAAHLKSFDFIL   98 (168)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------HT-CSEEEE-TTCHHHHHTTTTCEEEEE
T ss_pred             CCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhc--------cC-CcEEEE-CchhhHHHHhcCCCceee
Confidence            35789999999999999999999999999999876654211100        00 000111 111111223334689999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      -++... .+   + ...+. .++++..++.+|.
T Consensus        99 d~~g~~-~~---~-~~~~~-~l~~~G~iv~~G~  125 (168)
T d1uufa2          99 NTVAAP-HN---L-DDFTT-LLKRDGTMTLVGA  125 (168)
T ss_dssp             ECCSSC-CC---H-HHHHT-TEEEEEEEEECCC
T ss_pred             eeeecc-hh---H-HHHHH-HHhcCCEEEEecc
Confidence            998632 21   2 33567 8899999888874

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=0.0001  Score=56.68  Aligned_cols=39  Identities=23%  Similarity=0.442  Sum_probs=35.5

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      ...+.||+|.|||.|.+|..-|+.|...|++|+++++..
T Consensus         8 ~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~   46 (150)
T d1kyqa1           8 AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (150)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             heeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            356999999999999999999999999999999997643

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.17  E-value=0.00054  Score=56.71  Aligned_cols=109  Identities=19%  Similarity=0.108  Sum_probs=66.0

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhc-cCCCEEEEEcCCCCCcc----ccccccchhhhccccccccccccC-CCCCHHH
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHS----QVSCQSSALAVKNGIIDDLVDEKG-CHEDIFE  221 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~e  221 (269)
                      +.++.|++|.|-|||++|+.+|+.|. ..|++|++++.+...-.    ........+.-.++.   ...... ...+-++
T Consensus        26 ~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~---~~~~~~~~~~~~~~  102 (234)
T d1b26a1          26 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGT---VVTYPKGERITNEE  102 (234)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSC---STTCSSCEEECHHH
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcc---eeccccceeecccc
Confidence            46799999999999999999999995 68999998774321100    000000000000000   000011 2234567


Q ss_pred             HHh-hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCCC
Q 024297          222 FAS-KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGHG  266 (269)
Q Consensus       222 ll~-~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~~  266 (269)
                      ++. .|||++-|     ...+.|+.+... .++-. +++--+=+++
T Consensus       103 ~~~~~~DI~~Pc-----A~~~~I~~~~a~-~l~~~-~I~e~AN~p~  141 (234)
T d1b26a1         103 LLELDVDILVPA-----ALEGAIHAGNAE-RIKAK-AVVEGANGPT  141 (234)
T ss_dssp             HHTSCCSEEEEC-----SCTTCBCHHHHT-TCCCS-EEECCSSSCB
T ss_pred             ccccccceeecc-----hhcccccHHHHH-Hhhhc-eEeecCCCCC
Confidence            777 99999887     456899999988 88743 5555444443

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.16  E-value=0.00035  Score=55.76  Aligned_cols=74  Identities=16%  Similarity=0.214  Sum_probs=48.0

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccc-------cccccccC----CCCCHHHH
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII-------DDLVDEKG----CHEDIFEF  222 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~----~~~~l~el  222 (269)
                      ++|+|||+|-+|..+|..+ +.|++|++||.+...-..         +++|..       +.......    ...+....
T Consensus         1 MkI~ViGlG~vGl~~a~~~-a~g~~V~g~Din~~~v~~---------l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~   70 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLL-SLQNEVTIVDILPSKVDK---------INNGLSPIQDEYIEYYLKSKQLSIKATLDSKAA   70 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TTTSEEEEECSCHHHHHH---------HHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHH
T ss_pred             CEEEEECCChhHHHHHHHH-HCCCcEEEEECCHHHHHH---------HhhcccccchhhHHHHhhhhhhhhhccchhhhh
Confidence            4799999999999999877 479999999976543110         011110       01111000    12356677


Q ss_pred             HhhCCEEEEecCCCc
Q 024297          223 ASKADVVVCCLSLNK  237 (269)
Q Consensus       223 l~~aDvvv~~lp~t~  237 (269)
                      ..++|++++++|...
T Consensus        71 ~~~~~ii~v~vpt~~   85 (196)
T d1dlja2          71 YKEAELVIIATPTNY   85 (196)
T ss_dssp             HHHCSEEEECCCCCE
T ss_pred             hhccccccccCCccc
Confidence            889999999999443

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.14  E-value=0.00011  Score=57.97  Aligned_cols=94  Identities=15%  Similarity=0.157  Sum_probs=60.7

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHH-HHh-----
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE-FAS-----  224 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~-----  224 (269)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++++++..+.....+.        | .+..+..  ..+++.+ +.+     
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l--------G-a~~~i~~--~~~~~~~~v~~~t~g~   95 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY--------G-ATDILNY--KNGHIEDQVMKLTNGK   95 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH--------T-CSEEECG--GGSCHHHHHHHHTTTS
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh--------C-ccccccc--cchhHHHHHHHHhhcc
Confidence            57899999999999999999999998 799999876542211100        0 0001100  1123333 222     


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ..|+++-++...    ..+ ...+. .++++..++.+|
T Consensus        96 G~D~vid~~g~~----~~~-~~a~~-~~~~~G~iv~~G  127 (174)
T d1jqba2          96 GVDRVIMAGGGS----ETL-SQAVK-MVKPGGIISNIN  127 (174)
T ss_dssp             CEEEEEECSSCT----THH-HHHHH-HEEEEEEEEECC
T ss_pred             CcceEEEccCCH----HHH-HHHHH-HHhcCCEEEEEe
Confidence            279999998632    223 33567 889999998886

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.09  E-value=1.5e-05  Score=63.20  Aligned_cols=100  Identities=15%  Similarity=0.059  Sum_probs=57.9

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      ..+.+++|.|+|.|..|++++..|...+.+|++++|+.++.......   +. ..+.+.       .....+..+.++|+
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~---~~-~~~~~~-------~~~~~~~~~~~~di   82 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAER---FQ-PYGNIQ-------AVSMDSIPLQTYDL   82 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHH---HG-GGSCEE-------EEEGGGCCCSCCSE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHH---Hh-hccccc-------hhhhccccccccce
Confidence            46889999999999999999999888778999999987542111100   00 000000       00011112578999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ||++.|.......  ...... .++++..++++.
T Consensus        83 iIN~tp~g~~~~~--~~~~~~-~~~~~~~~~D~v  113 (171)
T d1p77a1          83 VINATSAGLSGGT--ASVDAE-ILKLGSAFYDMQ  113 (171)
T ss_dssp             EEECCCC---------CCCHH-HHHHCSCEEESC
T ss_pred             eeecccccccccc--cchhhh-hhcccceeeeee
Confidence            9999996532111  111223 445566666654

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.04  E-value=3.9e-05  Score=60.37  Aligned_cols=37  Identities=16%  Similarity=0.265  Sum_probs=33.9

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  188 (269)
                      .+++|.|+|.|..|++++..|...|+ +|.+++|+.++
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~k   53 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKT   53 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHH
Confidence            67899999999999999999999998 79999998764

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.04  E-value=0.00028  Score=61.15  Aligned_cols=90  Identities=16%  Similarity=0.127  Sum_probs=63.7

Q ss_pred             CCEEEEEecCchHHHHHHHhcc-CCC-EEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCE
Q 024297          153 GKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV  228 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDv  228 (269)
                      -++++|||.|..++..++.+.. +.. +|.+|+|+.++...-..              ......  ...+..+.+..||+
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~--------------~~~~~~~~~~~~~~~a~~~aDi  190 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVS--------------YCEDRGISASVQPAEEASRCDV  190 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHH--------------HHHHTTCCEEECCHHHHTSSSE
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHH--------------HHHhcCCccccchhhhhccccE
Confidence            3589999999999999998874 665 79999987654211100              001111  12345677899999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |+.+.   +.+..++..+    .+++|+.++.+|-
T Consensus       191 V~taT---~s~~P~~~~~----~l~~G~hv~~iGs  218 (320)
T d1omoa_         191 LVTTT---PSRKPVVKAE----WVEEGTHINAIGA  218 (320)
T ss_dssp             EEECC---CCSSCCBCGG----GCCTTCEEEECSC
T ss_pred             EEEec---cCcccccchh----hcCCCCeEeecCC
Confidence            99885   4677888863    5789999999873

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.02  E-value=0.00013  Score=56.86  Aligned_cols=35  Identities=37%  Similarity=0.523  Sum_probs=31.9

Q ss_pred             CEEEEE-ecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          154 KTVFIL-GFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       154 ~~vgIi-G~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .||+|+ |.|.||+++|+.|...|++|.+++|++++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~   36 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEK   36 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            479999 89999999999999999999999997654

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.95  E-value=0.00035  Score=53.23  Aligned_cols=102  Identities=11%  Similarity=0.059  Sum_probs=57.9

Q ss_pred             CEEEEEecCchHHHHHHHhccCC--CEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhCCEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVV  229 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDvv  229 (269)
                      .||+|||.|.+|..+|..+...|  -++..+|.+.........   +.   ... ........  ...+..+.+++||+|
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~---d~---~~~-~~~~~~~~~i~~~~~~~~~~dadvv   73 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKAL---DM---YES-GPVGLFDTKVTGSNDYADTANSDIV   73 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHH---HH---HTT-HHHHTCCCEEEEESCGGGGTTCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhh---hh---hcc-cchhcccceEEecCCHHHhcCCeEE
Confidence            47999999999999999988766  489999987754211100   00   000 00000000  112334668999999


Q ss_pred             EEecC--CCc-cccC-cC--CH-------HHHhhhCCCCcEEEEccC
Q 024297          230 VCCLS--LNK-QTVK-LC--SS-------SLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       230 v~~lp--~t~-~t~~-li--~~-------~~l~~~mk~ga~lIN~~R  263 (269)
                      +++.-  ..+ ++|. ++  |.       +.+. ...|.++++|++-
T Consensus        74 vitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~-~~~p~aivivvtN  119 (142)
T d1guza1          74 IITAGLPRKPGMTREDLLMKNAGIVKEVTDNIM-KHSKNPIIIVVSN  119 (142)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHH-HHCSSCEEEECCS
T ss_pred             EEEEecCCCCCCchHHHHHHHHHHHHHHHHHhh-ccCCCeEEEEecC
Confidence            99953  333 1211 01  00       1233 3457888988753

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.93  E-value=0.0012  Score=50.68  Aligned_cols=99  Identities=17%  Similarity=0.184  Sum_probs=65.4

Q ss_pred             ccCCEEEEEec---CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC----CCCCHHHHH
Q 024297          151 LLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  223 (269)
Q Consensus       151 l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  223 (269)
                      |.|+||+++|=   |++.+.++..+..||++++++.+.......               .......+    ...++++.+
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~---------------~~~~~~~~~~~~~~~d~~eai   65 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRAR---------------KEILDELNYPVKEVENPFEVI   65 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCC---------------HHHHTTCCSCEEEESCGGGTG
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccc---------------hhhcccCCCeEEEEeCHHHHh
Confidence            57999999994   569999999999999987665532211000               00111111    235788999


Q ss_pred             hhCCEEEEecCCCc-----------cccCcCCHHHHhhhCCCCcEEEEcc-CCC
Q 024297          224 SKADVVVCCLSLNK-----------QTVKLCSSSLSSKSMFFATYVVFMF-QGH  265 (269)
Q Consensus       224 ~~aDvvv~~lp~t~-----------~t~~li~~~~l~~~mk~ga~lIN~~-RG~  265 (269)
                      +++|+|...--...           .....++.+.++ .++++++|.-+. ||.
T Consensus        66 ~~aDvvy~~~~q~~~~~~~~~~~~~~~~y~v~~~~l~-~~~~~~i~mH~LPR~~  118 (153)
T d1pg5a2          66 NEVDVLYVTRIQKERFVDEMEYEKIKGSYIVSLDLAN-KMKKDSIILHPLPRVN  118 (153)
T ss_dssp             GGCSEEEEECCCSTTSSCHHHHHHHGGGGSBCHHHHH-TSCTTCEEECCSCCSS
T ss_pred             hcCCeEEEeeeeehhccchhHHHHHHHhhhhhHHHHh-ccCCCeEEecCCCCcC
Confidence            99999876521110           123457898999 999999998766 554

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.92  E-value=0.00047  Score=54.36  Aligned_cols=102  Identities=17%  Similarity=0.245  Sum_probs=56.0

Q ss_pred             CEEEEEecCchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhcccccc--ccccccC--CCCCHHHHHhhCCE
Q 024297          154 KTVFILGFGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIID--DLVDEKG--CHEDIFEFASKADV  228 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~l~ell~~aDv  228 (269)
                      ++|||-|||+|||.+.+.+... .++|.+++...+.........-++....+...  .......  ...+..++++++|+
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv   81 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence            4899999999999999988765 47888776432221100000000000000000  0011111  12367888999999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      |+-|.|.      +.+.+..+..++.|+-+|=+
T Consensus        82 ViEcTG~------f~~~~~~~~hl~~G~K~vi~  108 (171)
T d1cf2o1          82 VIDCTPE------GIGAKNLKMYKEKGIKAIFQ  108 (171)
T ss_dssp             EEECCST------THHHHHHHHHHHTTCEEEEC
T ss_pred             EEEccCC------CCCHHHHHHHHHcCCCEEEE
Confidence            9999763      33444444366777665544

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.91  E-value=0.00024  Score=55.13  Aligned_cols=95  Identities=19%  Similarity=0.113  Sum_probs=58.9

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH----HhhC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF----ASKA  226 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~a  226 (269)
                      -.|.+|.|+|.|.+|..+++.++.+|++|+++++++.+.....        .-| .+.....  ..++..+.    ....
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~--------~~G-a~~~i~~--~~~~~~~~~~~~~~g~   94 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELAR--------KLG-ASLTVNA--RQEDPVEAIQRDIGGA   94 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH--------HTT-CSEEEET--TTSCHHHHHHHHHSSE
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhh--------ccC-ccccccc--cchhHHHHHHHhhcCC
Confidence            3578999999999999999999999999999998765421110        001 0111111  11233222    2234


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |.++.+... ++   .+ ...++ .++++..++.+|
T Consensus        95 ~~~i~~~~~-~~---~~-~~~~~-~l~~~G~iv~~G  124 (166)
T d1llua2          95 HGVLVTAVS-NS---AF-GQAIG-MARRGGTIALVG  124 (166)
T ss_dssp             EEEEECCSC-HH---HH-HHHHT-TEEEEEEEEECC
T ss_pred             ccccccccc-ch---HH-HHHHH-HhcCCcEEEEEE
Confidence            666665542 22   22 33667 899999998886

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.88  E-value=0.0023  Score=49.63  Aligned_cols=107  Identities=13%  Similarity=0.059  Sum_probs=68.1

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      +|.|++|+++|= .++.+.++..+..||++|.++.+..-.......   .....++.  ..........+++++++.+|+
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~d~~ea~~~adv   75 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVI---KWAEQNAA--ESGGSFELLHDPVKAVKDADV   75 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHH---HHHHHHHH--HHTCEEEEESCHHHHTTTCSE
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHH---HHHHHhhh--cccceEEEecCHHHHhhhccE
Confidence            588999999994 457799999999999999999874322111000   00000000  000001123689999999999


Q ss_pred             EEEecCCC------cc------ccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          229 VVCCLSLN------KQ------TVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       229 vv~~lp~t------~~------t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |....=..      .+      ....++.+.++ .+|++++|.-..
T Consensus        76 iy~~~~~~~~~~~~~~~~~~~~~~y~v~~~~l~-~ak~~~iimHpl  120 (163)
T d1pvva2          76 IYTDVWASMGQEAEAEERRKIFRPFQVNKDLVK-HAKPDYMFMHCL  120 (163)
T ss_dssp             EEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHH-TSCTTCEEEECS
T ss_pred             EeecceeecccchhhHHHHHHhhhhhHHHHHHH-hhCCCeEEecCC
Confidence            98763111      11      12577899999 999999998765

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.87  E-value=0.00057  Score=52.82  Aligned_cols=76  Identities=16%  Similarity=0.091  Sum_probs=48.6

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccC---CCCCHHHHHhhCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASKAD  227 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~aD  227 (269)
                      +.+||+|||.|.+|+.+|..+...+. ++..+|.+........   .++.  +.  ........   ...+.++.++.||
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a---~Dl~--~~--~~~~~~~~~~~~~~~~~~~~~~ad   78 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKA---LDLS--HV--TSVVDTNVSVRAEYSYEAALTGAD   78 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHH---HHHH--HH--HHHTTCCCCEEEECSHHHHHTTCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHH---HHHh--hh--ccccCCeeEEeccCchhhhhcCCC
Confidence            45799999999999999988876665 8999998765321110   0000  00  00000000   1245778899999


Q ss_pred             EEEEecC
Q 024297          228 VVVCCLS  234 (269)
Q Consensus       228 vvv~~lp  234 (269)
                      +|+++..
T Consensus        79 iVvitag   85 (154)
T d1pzga1          79 CVIVTAG   85 (154)
T ss_dssp             EEEECCS
T ss_pred             eEEEecc
Confidence            9999874

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.85  E-value=0.00038  Score=54.94  Aligned_cols=102  Identities=14%  Similarity=0.174  Sum_probs=57.8

Q ss_pred             CEEEEEecCchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhc---cccccccccccC--CCCCHHHHHhhCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVK---NGIIDDLVDEKG--CHEDIFEFASKAD  227 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~l~ell~~aD  227 (269)
                      .+|||.|||+||+.+++.+... .++|.+++...+......-..-++...   .+.+. ......  ...++.+++.++|
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vD   81 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIP-RFEKEGFEVAGTLNDLLEKVD   81 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHH-HHHHHTCCCSCBHHHHHTTCS
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeeccccccee-eecccCccccchhhhhhccCC
Confidence            4899999999999999988754 578777764322111000000000000   11000 111111  2347888899999


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +|+=|.|      .+.+.+..++.++.|+-.|=+|
T Consensus        82 vViEcTG------~f~~~~~~~~hl~~G~k~Vi~s  110 (172)
T d2czca2          82 IIVDATP------GGIGAKNKPLYEKAGVKAIFQG  110 (172)
T ss_dssp             EEEECCS------TTHHHHHHHHHHHHTCEEEECT
T ss_pred             EEEECCC------CCCCHHHHHHHHHcCCCEEEEC
Confidence            9999966      3334555554677777665544

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.81  E-value=0.00026  Score=55.94  Aligned_cols=71  Identities=14%  Similarity=0.175  Sum_probs=45.0

Q ss_pred             CEEEEEecCchHHHHHHHhccC-CCEEEE-EcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh--hCCEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADVV  229 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDvv  229 (269)
                      -++||||+|.+|+..++.++.. +++|.+ +|++.++... .      +-..+.    ......+.+++++++  +.|+|
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~-~------~~~~~~----~~~~~~~~~~~~ll~~~~iD~v   70 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKA-F------ATANNY----PESTKIHGSYESLLEDPEIDAL   70 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHH-H------HHHTTC----CTTCEEESSHHHHHHCTTCCEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCcccccc-c------hhcccc----ccceeecCcHHHhhhcccccee
Confidence            3799999999999999988865 778775 4665432110 0      000000    000002468999985  57999


Q ss_pred             EEecCC
Q 024297          230 VCCLSL  235 (269)
Q Consensus       230 v~~lp~  235 (269)
                      +++.|.
T Consensus        71 ~I~tp~   76 (184)
T d1ydwa1          71 YVPLPT   76 (184)
T ss_dssp             EECCCG
T ss_pred             eecccc
Confidence            999874

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.73  E-value=0.00043  Score=53.81  Aligned_cols=69  Identities=12%  Similarity=0.200  Sum_probs=43.8

Q ss_pred             CEEEEEecCchHHH-HHHHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-hCCEEE
Q 024297          154 KTVFILGFGNIGVE-LAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-KADVVV  230 (269)
Q Consensus       154 ~~vgIiG~G~iG~~-~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDvvv  230 (269)
                      .+|||||+|.+|+. ....+..+ +.++.++++++.......              ........+.+.++++. +.|+|+
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~--------------~~~~~~~~~~~~~~ll~~~iD~V~   67 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLA--------------TRYRVSATCTDYRDVLQYGVDAVM   67 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHH--------------HHTTCCCCCSSTTGGGGGCCSEEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHH--------------HhcccccccccHHHhcccccceec
Confidence            48999999999976 57777766 678888887654321100              00000112355666665 679999


Q ss_pred             EecCCC
Q 024297          231 CCLSLN  236 (269)
Q Consensus       231 ~~lp~t  236 (269)
                      ++.|..
T Consensus        68 I~tp~~   73 (167)
T d1xeaa1          68 IHAATD   73 (167)
T ss_dssp             ECSCGG
T ss_pred             cccccc
Confidence            998743

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.70  E-value=0.00032  Score=55.03  Aligned_cols=96  Identities=9%  Similarity=0.080  Sum_probs=59.9

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh----
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK----  225 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~----  225 (269)
                      -.|.+|.|+|.|.+|...++.++.+|++ |++.+++..+.....+        -| ....+..  ...++.+.+.+    
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~--------~G-a~~~i~~--~~~~~~~~i~~~t~g   95 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ--------LG-ATHVINS--KTQDPVAAIKEITDG   95 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH--------HT-CSEEEET--TTSCHHHHHHHHTTS
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH--------cC-CeEEEeC--CCcCHHHHHHHHcCC
Confidence            4688999999999999999999999995 5566665543211100        00 0111111  12344444333    


Q ss_pred             -CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          226 -ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       226 -aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                       .|+++-++. +++   .+ +..++ .++++..++.+|-
T Consensus        96 g~D~vid~~G-~~~---~~-~~~~~-~~~~~G~i~~~G~  128 (174)
T d1f8fa2          96 GVNFALESTG-SPE---IL-KQGVD-ALGILGKIAVVGA  128 (174)
T ss_dssp             CEEEEEECSC-CHH---HH-HHHHH-TEEEEEEEEECCC
T ss_pred             CCcEEEEcCC-cHH---HH-HHHHh-cccCceEEEEEee
Confidence             699999876 222   11 34567 8999999988874

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00038  Score=54.46  Aligned_cols=96  Identities=19%  Similarity=0.295  Sum_probs=61.3

Q ss_pred             cCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh------
Q 024297          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS------  224 (269)
Q Consensus       152 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~------  224 (269)
                      .|.+|.|+|. |.+|+...+.++.+|++|++.+++.++... .       -..| .+..+..  ...++.+-+.      
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~-~-------~~~G-a~~vi~~--~~~~~~~~i~~~t~~~   96 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKI-V-------LQNG-AHEVFNH--REVNYIDKIKKYVGEK   96 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHH-H-------HHTT-CSEEEET--TSTTHHHHHHHHHCTT
T ss_pred             CCCEEEEEeccccccccccccccccCccccccccccccccc-c-------cccC-ccccccc--ccccHHHHhhhhhccC
Confidence            6889999995 999999999999999999999876543111 0       0111 0111111  1234433332      


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      ..|+++-++. . +   .+ ...++ .|+++..+|.+|-..
T Consensus        97 g~d~v~d~~g-~-~---~~-~~~~~-~l~~~G~iv~~G~~~  130 (174)
T d1yb5a2          97 GIDIIIEMLA-N-V---NL-SKDLS-LLSHGGRVIVVGSRG  130 (174)
T ss_dssp             CEEEEEESCH-H-H---HH-HHHHH-HEEEEEEEEECCCCS
T ss_pred             CceEEeeccc-H-H---HH-HHHHh-ccCCCCEEEEEecCC
Confidence            2688887764 1 1   22 44678 899999999987543

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.68  E-value=0.00051  Score=52.72  Aligned_cols=35  Identities=29%  Similarity=0.462  Sum_probs=29.9

Q ss_pred             CEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWAS  188 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~  188 (269)
                      |||+|||.|.+|..+|..+...|.  ++..+|.+..+
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~   38 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAK   38 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccch
Confidence            799999999999999998886654  89999986543

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=96.66  E-value=0.012  Score=47.94  Aligned_cols=121  Identities=14%  Similarity=0.110  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCcccccc
Q 024297          116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSC  194 (269)
Q Consensus       116 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~  194 (269)
                      +|--+++.+|+.+|-.                ++.|.+.++.|.|.|+-|-.+|+.+...|. +++.+|+..--+.....
T Consensus         5 TaaV~LAgll~a~~~~----------------g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~   68 (222)
T d1vl6a1           5 TAVVVSAAFLNALKLT----------------EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPE   68 (222)
T ss_dssp             HHHHHHHHHHHHHHHH----------------TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGG
T ss_pred             HHHHHHHHHHHHHHHh----------------CCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCccc
Confidence            5567788888888864                578999999999999999999999998887 69999986322111000


Q ss_pred             -ccchhhhccccccccccc---cCCCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          195 -QSSALAVKNGIIDDLVDE---KGCHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       195 -~~~~~~~~~~~~~~~~~~---~~~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                       ....+.      ......   .....++.+.+..+|++...-     +.+++.++.+. .|.++.++.=.+..
T Consensus        69 ~~~~~~~------~~~~~~~~~~~~~~~l~~~l~g~~~~~g~~-----~~~~~~~e~m~-~~~~rPIIFpLSNP  130 (222)
T d1vl6a1          69 TCLNEYH------LEIARITNPERLSGDLETALEGADFFIGVS-----RGNILKPEWIK-KMSRKPVIFALANP  130 (222)
T ss_dssp             GCSSHHH------HHHHHTSCTTCCCSCHHHHHTTCSEEEECS-----CSSCSCHHHHT-TSCSSCEEEECCSS
T ss_pred             ccccHHH------HHHHhhhcchhhhcchHhhccCcceecccc-----ccccccHHHHh-hcCCCCEEEecCCC
Confidence             000000      000111   112457899999999877663     57899999999 99999888776654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.62  E-value=0.0021  Score=50.32  Aligned_cols=97  Identities=15%  Similarity=0.219  Sum_probs=59.3

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH-----h
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-----S  224 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~  224 (269)
                      -.|.+|.|+|.|.||...++.++.+|+ +|++.+++..+.....+        -| ++................     .
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~--------~G-a~~~i~~~~~~~~~~~~~~~~~~~   97 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA--------LG-ATDCLNPRELDKPVQDVITELTAG   97 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH--------TT-CSEEECGGGCSSCHHHHHHHHHTS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH--------hC-CCcccCCccchhhhhhhHhhhhcC
Confidence            467899999999999999999999998 68888887655221111        01 011111111112333333     2


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCC-cEEEEcc
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFA-TYVVFMF  262 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~g-a~lIN~~  262 (269)
                      ..|+++-+... +++   + .+.+. .++++ ..++.++
T Consensus        98 G~d~vie~~G~-~~~---~-~~a~~-~~~~g~G~~v~vG  130 (174)
T d1e3ia2          98 GVDYSLDCAGT-AQT---L-KAAVD-CTVLGWGSCTVVG  130 (174)
T ss_dssp             CBSEEEESSCC-HHH---H-HHHHH-TBCTTTCEEEECC
T ss_pred             CCcEEEEeccc-chH---H-HHHHH-HhhcCCeEEEecC
Confidence            47999998762 222   2 33566 77875 5666665

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.59  E-value=0.00058  Score=52.66  Aligned_cols=95  Identities=20%  Similarity=0.190  Sum_probs=60.8

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCC----HHHHHhhCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED----IFEFASKAD  227 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~ell~~aD  227 (269)
                      .|.+|.|+|.|.||...++.++.+|++|++++++..+... .       -..| ++.....  ...+    +.+.....|
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~-~-------k~~G-a~~~~~~--~~~~~~~~~~~~~~~~~   95 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLEL-A-------KELG-ADLVVNP--LKEDAAKFMKEKVGGVH   95 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHH-H-------HHTT-CSEEECT--TTSCHHHHHHHHHSSEE
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhh-h-------hhcC-cceeccc--ccchhhhhcccccCCCc
Confidence            5789999999999999999999999999999976654211 0       0011 0111111  1123    334445567


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      .++.+.. .++   .+ ...+. .++++..++.++-
T Consensus        96 ~~v~~~~-~~~---~~-~~a~~-~l~~~G~i~~~g~  125 (168)
T d1rjwa2          96 AAVVTAV-SKP---AF-QSAYN-SIRRGGACVLVGL  125 (168)
T ss_dssp             EEEESSC-CHH---HH-HHHHH-HEEEEEEEEECCC
T ss_pred             eEEeecC-CHH---HH-HHHHH-HhccCCceEeccc
Confidence            7776654 332   22 34677 8999999998863

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.57  E-value=0.0004  Score=54.35  Aligned_cols=91  Identities=12%  Similarity=0.162  Sum_probs=59.7

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCH-H--HHHhhC
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI-F--EFASKA  226 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~--ell~~a  226 (269)
                      -.|++|.|.|. |.+|+..++.++.+|++|++.+++..+.....        .-| ++...    .+.+. .  .....+
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~--------~lG-a~~~i----~~~~~~~~~~~~~g~   92 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL--------ALG-AEEAA----TYAEVPERAKAWGGL   92 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH--------HTT-CSEEE----EGGGHHHHHHHTTSE
T ss_pred             CCCCEEEEEeccccchhhhhhhhccccccccccccccccccccc--------ccc-cceee----ehhhhhhhhhccccc
Confidence            36789999995 99999999999999999999998755421111        001 01111    11222 1  223458


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|+-+..   ++   + ...++ .++++..++.+|
T Consensus        93 D~v~d~~G---~~---~-~~~~~-~l~~~G~~v~~G  120 (171)
T d1iz0a2          93 DLVLEVRG---KE---V-EESLG-LLAHGGRLVYIG  120 (171)
T ss_dssp             EEEEECSC---TT---H-HHHHT-TEEEEEEEEEC-
T ss_pred             cccccccc---hh---H-HHHHH-HHhcCCcEEEEe
Confidence            99988654   21   2 45788 999999999986

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.54  E-value=0.0018  Score=48.64  Aligned_cols=103  Identities=18%  Similarity=0.089  Sum_probs=65.6

Q ss_pred             ccccCCEEEEEec----------CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCC
Q 024297          149 ETLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED  218 (269)
Q Consensus       149 ~~l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (269)
                      ..+.+++|+|+|+          ++-...+++.|...|++|.+||+..+........ ..+ ..+. ...  .......+
T Consensus         9 ~~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~-~~~-~~~~-~~~--~~~~~~~~   83 (136)
T d1mv8a3           9 TSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGAN-KEY-IESK-IPH--VSSLLVSD   83 (136)
T ss_dssp             TTSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSC-HHH-HHHT-SHH--HHTTBCSC
T ss_pred             HhcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhh-hhh-hhhc-ccc--ccceeehh
Confidence            3467899999995          6888999999999999999999743210000000 000 0000 000  00112478


Q ss_pred             HHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          219 IFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       219 l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      +.+++..+|+|+++.+.. +-     ++... .++++.+++++ ||
T Consensus        84 ~~e~i~~~D~ivi~t~h~-~f-----~~l~~-~~~~~~~I~D~-~~  121 (136)
T d1mv8a3          84 LDEVVASSDVLVLGNGDE-LF-----VDLVN-KTPSGKKLVDL-VG  121 (136)
T ss_dssp             HHHHHHHCSEEEECSCCG-GG-----HHHHH-SCCTTCEEEES-SS
T ss_pred             hhhhhhhceEEEEEeCCH-HH-----HHHHH-HhcCCCEEEEC-CC
Confidence            999999999999998743 21     33455 67788899987 55

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.49  E-value=0.00045  Score=54.18  Aligned_cols=94  Identities=18%  Similarity=0.163  Sum_probs=61.2

Q ss_pred             cCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH------h
Q 024297          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA------S  224 (269)
Q Consensus       152 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~  224 (269)
                      .|.+|.|.|. |.+|+.+++.++.+|++|++..++.++..        +.-..| .+..+..  ...++.+-+      .
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~--------~l~~~G-a~~vi~~--~~~~~~~~v~~~t~~~   93 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKRE--------MLSRLG-VEYVGDS--RSVDFADEILELTDGY   93 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHH--------HHHTTC-CSEEEET--TCSTHHHHHHHHTTTC
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeeccccccc--------cccccc-ccccccC--CccCHHHHHHHHhCCC
Confidence            5789999895 99999999999999999999887644311        111111 1111111  123443333      2


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      ..|+++.++..  +   .+ .+.++ .++++..+|++|.
T Consensus        94 g~d~v~d~~g~--~---~~-~~~~~-~l~~~G~~v~~G~  125 (183)
T d1pqwa_          94 GVDVVLNSLAG--E---AI-QRGVQ-ILAPGGRFIELGK  125 (183)
T ss_dssp             CEEEEEECCCT--H---HH-HHHHH-TEEEEEEEEECSC
T ss_pred             CEEEEEecccc--h---HH-HHHHH-HhcCCCEEEEEcc
Confidence            47999988751  1   22 44677 9999999999874

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.36  E-value=0.0014  Score=50.68  Aligned_cols=90  Identities=20%  Similarity=0.154  Sum_probs=53.8

Q ss_pred             CEEEEEecCchHHH-HHHHhccC-CCEEEEE-cCCCCCccccccccchhhhccccccccccccC---CCCCHHHHH----
Q 024297          154 KTVFILGFGNIGVE-LAKRLRPF-GVKIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFA----  223 (269)
Q Consensus       154 ~~vgIiG~G~iG~~-~a~~l~~~-G~~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell----  223 (269)
                      -++||||.|.||+. +.+.++.+ ..++.++ +++......                ......+   ...++++++    
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~----------------~~a~~~~i~~~~~~~d~l~~~~~   68 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGL----------------ARAQRMGVTTTYAGVEGLIKLPE   68 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHH----------------HHHHHTTCCEESSHHHHHHHSGG
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccch----------------hhhhhcCCcccccceeeeeeccc
Confidence            48999999999986 56777765 4466555 555432110                0111111   123455554    


Q ss_pred             -hhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          224 -SKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       224 -~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                       .+.|+|+.++|...   |.=.+..++ ..+.|..+|+.+-
T Consensus        69 ~~~iDiVf~ATpag~---h~~~~~~~~-aa~~G~~VID~s~  105 (157)
T d1nvmb1          69 FADIDFVFDATSASA---HVQNEALLR-QAKPGIRLIDLTP  105 (157)
T ss_dssp             GGGEEEEEECSCHHH---HHHHHHHHH-HHCTTCEEEECST
T ss_pred             ccccCEEEEcCCchh---HHHhHHHHH-HHHcCCEEEEccc
Confidence             36789999977332   221233455 6899999988764

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.35  E-value=0.0013  Score=49.94  Aligned_cols=35  Identities=17%  Similarity=0.178  Sum_probs=28.8

Q ss_pred             CEEEEEecCchHHHHHHHhccC--CCEEEEEcCCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSWAS  188 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~--G~~V~~~~~~~~~  188 (269)
                      .||+|||.|++|..+|..+...  .-++..+|.+..+
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~   37 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKR   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccccc
Confidence            4899999999999999877754  4699999986543

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.35  E-value=0.0022  Score=49.18  Aligned_cols=36  Identities=14%  Similarity=0.167  Sum_probs=30.2

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  188 (269)
                      ..||+|||.|.+|..+|..+...+. ++..+|++...
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~   39 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNM   39 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCc
Confidence            4689999999999999988776554 89999987654

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.34  E-value=0.003  Score=48.09  Aligned_cols=72  Identities=18%  Similarity=0.128  Sum_probs=46.5

Q ss_pred             CEEEEEec-CchHHHHHHHhccCCC--EEEEEcCCCCCccccccccchhhhcccccccccc--ccCCCCCHHHHHhhCCE
Q 024297          154 KTVFILGF-GNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD--EKGCHEDIFEFASKADV  228 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDv  228 (269)
                      .||+|||. |.+|+.+|..+...|.  ++..+|.+..+. ...+.      .+.  .....  ......+..+.++.||+
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~-~a~Dl------~~~--~~~~~~~~~~~~~~~~~~~~~aDi   71 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPG-VAADL------SHI--ETRATVKGYLGPEQLPDCLKGCDV   71 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHH-HHHHH------TTS--SSSCEEEEEESGGGHHHHHTTCSE
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccch-hhHHH------hhh--hhhcCCCeEEcCCChHHHhCCCCE
Confidence            48999995 9999999999997775  799999754321 11100      000  00000  01133567788999999


Q ss_pred             EEEecC
Q 024297          229 VVCCLS  234 (269)
Q Consensus       229 vv~~lp  234 (269)
                      |+++.-
T Consensus        72 vVitag   77 (144)
T d1mlda1          72 VVIPAG   77 (144)
T ss_dssp             EEECCS
T ss_pred             EEECCC
Confidence            999854

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0065  Score=47.11  Aligned_cols=106  Identities=16%  Similarity=0.083  Sum_probs=68.7

Q ss_pred             cccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCCCCCccccc-cccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVS-CQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       150 ~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      +|.|+||+++|=| ++.+.++..+..||+++.++.+......... .....+...+|      .......++++.+..+|
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~------~~i~~~~d~~~~~~~ad   74 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENG------TKLLLTNDPLEAAHGGN   74 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHT------CCEEEESCHHHHHTTCS
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccC------CEEEEEcCHHHHHhhhh
Confidence            4789999999954 4668888888889999999987533211100 00000000000      00112468999999999


Q ss_pred             EEEEecCCCcc------------ccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          228 VVVCCLSLNKQ------------TVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       228 vvv~~lp~t~~------------t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ++....-....            ....++.+.++ .++++++|.-..
T Consensus        75 vi~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~i~MHpl  120 (170)
T d1otha2          75 VLITDTWISMGREEEKKKRLQAFQGYQVTMKTAK-VAASDWTFLHCL  120 (170)
T ss_dssp             EEEECCSSCTTCGGGHHHHHHHTTTCCBCHHHHH-TSCTTCEEEECS
T ss_pred             heeeeceecccchhhhHHHHHHHhhhhhhhhhhh-ccCCceEEecCC
Confidence            99987643221            23567888888 999999998776

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.25  E-value=0.0015  Score=49.73  Aligned_cols=35  Identities=17%  Similarity=0.163  Sum_probs=28.1

Q ss_pred             CEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWAS  188 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~  188 (269)
                      +||+|||.|.+|..+|..+...|.  ++..+|+....
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~   38 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEK   38 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCc
Confidence            589999999999999988876554  89999987654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.23  E-value=0.0008  Score=52.43  Aligned_cols=97  Identities=15%  Similarity=0.137  Sum_probs=61.5

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh-----
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK-----  225 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-----  225 (269)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++++++..+... ..       ..| .+.....  ..++.++.++.     
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~-~~-------~~g-a~~~i~~--~~~~~~~~~~~~~~~g  100 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKL-AE-------RLG-ADHVVDA--RRDPVKQVMELTRGRG  100 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHH-HH-------HTT-CSEEEET--TSCHHHHHHHHTTTCC
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHH-Hh-------hcc-cceeecC--cccHHHHHHHhhCCCC
Confidence            47899999999999999999999986 67888876543111 10       001 0111111  12334444443     


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCCC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQGH  265 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG~  265 (269)
                      .|+++.++... .   .+ ...+. .++++..++.+|-+.
T Consensus       101 ~d~vid~~g~~-~---~~-~~a~~-~l~~~G~iv~~G~~~  134 (172)
T d1h2ba2         101 VNVAMDFVGSQ-A---TV-DYTPY-LLGRMGRLIIVGYGG  134 (172)
T ss_dssp             EEEEEESSCCH-H---HH-HHGGG-GEEEEEEEEECCCSS
T ss_pred             ceEEEEecCcc-h---HH-HHHHH-HHhCCCEEEEEeCcc
Confidence            68999887622 2   12 33567 899999999988553

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=96.19  E-value=0.0056  Score=46.81  Aligned_cols=105  Identities=11%  Similarity=0.036  Sum_probs=67.5

Q ss_pred             ccCCEEEEEec---CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          151 LLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       151 l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      |.|+||+|+|=   +++.+.++..+..||+++.++.+..-........   ....++      .......+++++++.+|
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~---~~~~~~------~~~~~~~d~~~av~~aD   72 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVE---ELREKG------MKVVETTTLEDVIGKLD   72 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHH---HHHHTT------CCEEEESCTHHHHTTCS
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHH---HHHhhc------ccceeecCHHHhhccCc
Confidence            68999999995   7899999999999999999998643221110000   000000      00012468899999999


Q ss_pred             EEEEecCCCcc-----------ccCcCCHHHHhhhCCCCcEEEEcc-CCC
Q 024297          228 VVVCCLSLNKQ-----------TVKLCSSSLSSKSMFFATYVVFMF-QGH  265 (269)
Q Consensus       228 vvv~~lp~t~~-----------t~~li~~~~l~~~mk~ga~lIN~~-RG~  265 (269)
                      +|....-....           ...-++.+.++ .+++.+++.-.. ||.
T Consensus        73 vvy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~mHplPRg~  121 (157)
T d1ml4a2          73 VLYVTRIQKERFPDEQEYLKVKGSYQVNLKVLE-KAKDELRIMHPLPRVD  121 (157)
T ss_dssp             EEEECCCCGGGSSSHHHHHTTTTCCCBCTTGGG-GSCTTCEEECCSCCSS
T ss_pred             EEEeeccccccccchhhHHhhcchhccCHHHHh-hcCCCeEEecCCCcCc
Confidence            98877542111           12345677777 888888876655 443

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.16  E-value=0.0031  Score=49.36  Aligned_cols=38  Identities=21%  Similarity=0.422  Sum_probs=34.6

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  188 (269)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|+++|++..+
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~k   66 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDK   66 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHH
Confidence            468899999999999999999999995 89999988766

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=96.12  E-value=0.0032  Score=51.64  Aligned_cols=83  Identities=18%  Similarity=0.191  Sum_probs=50.2

Q ss_pred             cCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       152 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      +-|||.|+|. |.||+.+++.|...|.+|++++|+....................+.-..........+.+.+..+|.++
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi   81 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVI   81 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeee
Confidence            3578999995 999999999999999999999987654321110000000001111111111223345668888999888


Q ss_pred             EecC
Q 024297          231 CCLS  234 (269)
Q Consensus       231 ~~lp  234 (269)
                      .+.+
T Consensus        82 ~~~~   85 (307)
T d1qyca_          82 STVG   85 (307)
T ss_dssp             ECCC
T ss_pred             eccc
Confidence            7765

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.12  E-value=0.0017  Score=50.99  Aligned_cols=65  Identities=20%  Similarity=0.245  Sum_probs=42.7

Q ss_pred             CEEEEEecCchHHH-HHHHhccCC--CEEE-EEcCCCCCccccccccchhhhccccccccccccC---CCCCHHHHHh--
Q 024297          154 KTVFILGFGNIGVE-LAKRLRPFG--VKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--  224 (269)
Q Consensus       154 ~~vgIiG~G~iG~~-~a~~l~~~G--~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--  224 (269)
                      -+|||||+|.+|+. .+..++.++  ++|. ++|++..+. .                ......+   .+.+++++++  
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~-~----------------~~~~~~~~~~~~~~~~ell~~~   66 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHA-E----------------EFAKMVGNPAVFDSYEELLESG   66 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHH-H----------------HHHHHHSSCEEESCHHHHHHSS
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhh-h----------------hhhccccccceeeeeecccccc
Confidence            47999999999987 477777653  5766 456654331 1                1111111   2478999987  


Q ss_pred             hCCEEEEecCC
Q 024297          225 KADVVVCCLSL  235 (269)
Q Consensus       225 ~aDvvv~~lp~  235 (269)
                      +.|+|+++.|.
T Consensus        67 ~id~v~I~tp~   77 (181)
T d1zh8a1          67 LVDAVDLTLPV   77 (181)
T ss_dssp             CCSEEEECCCG
T ss_pred             ccceeeccccc
Confidence            47889999874

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.05  E-value=0.0032  Score=45.97  Aligned_cols=34  Identities=29%  Similarity=0.406  Sum_probs=31.6

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      ++|.|||.|.+|-++|..|..+|.+|+.+.+...
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR   56 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence            7899999999999999999999999999998643

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.04  E-value=0.0028  Score=46.58  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=31.5

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      +++.|||.|-||-++|..|..+|++|+.+.+...
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence            6899999999999999999999999999987654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.03  E-value=0.0044  Score=48.88  Aligned_cols=41  Identities=15%  Similarity=0.160  Sum_probs=36.6

Q ss_pred             ccccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       147 ~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      .-+....|+|+|||.|..|.+.|..|...|++|+.|++...
T Consensus        37 ~~~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          37 ILPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             CCSCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             cCCCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            34567789999999999999999999999999999998654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.01  E-value=0.0018  Score=45.85  Aligned_cols=37  Identities=19%  Similarity=0.246  Sum_probs=32.1

Q ss_pred             cCCEEEEEecCchH-HHHHHHhccCCCEEEEEcCCCCC
Q 024297          152 LGKTVFILGFGNIG-VELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       152 ~g~~vgIiG~G~iG-~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ..+++=+||.|.+| .++|+.|+..|++|.++|+...+
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~   44 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGV   44 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSH
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCCh
Confidence            46789999999999 55699999999999999987544

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.01  E-value=0.0047  Score=51.10  Aligned_cols=91  Identities=18%  Similarity=0.138  Sum_probs=55.2

Q ss_pred             CCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEE
Q 024297          153 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       153 g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~  231 (269)
                      -+||.|+| .|.||+.+++.|...|.+|+++.|+............ ..+.+.++.-........+.+.+.+..++.++.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~-~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~   81 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQML-LYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS   81 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHH-HHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHH-hhhccCCcEEEEeecccchhhhhhccCcchhhh
Confidence            35799999 5999999999999999999999987654221100000 000111111111112233557788899999999


Q ss_pred             ecCCCccccCcCC
Q 024297          232 CLSLNKQTVKLCS  244 (269)
Q Consensus       232 ~lp~t~~t~~li~  244 (269)
                      +.+.........+
T Consensus        82 ~~~~~~~~~~~~~   94 (312)
T d1qyda_          82 ALAGGVLSHHILE   94 (312)
T ss_dssp             CCCCSSSSTTTTT
T ss_pred             hhhhcccccchhh
Confidence            8875544444443

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.94  E-value=0.0032  Score=45.73  Aligned_cols=34  Identities=29%  Similarity=0.524  Sum_probs=31.6

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      +++.|||.|.+|-++|..+..+|.+|+.+.+...
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            7899999999999999999999999999987654

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.93  E-value=0.0041  Score=48.44  Aligned_cols=73  Identities=10%  Similarity=0.020  Sum_probs=43.3

Q ss_pred             CEEEEEecCchH--HHHHHHhcc---CC-CEEEEEcCCCCCccc-cccccchhhhcccccccccccc------CCCCCHH
Q 024297          154 KTVFILGFGNIG--VELAKRLRP---FG-VKIIATKRSWASHSQ-VSCQSSALAVKNGIIDDLVDEK------GCHEDIF  220 (269)
Q Consensus       154 ~~vgIiG~G~iG--~~~a~~l~~---~G-~~V~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~  220 (269)
                      .||.|||.|++|  ..++..++.   +. -+|..+|.+..+... ..+...         .......      ....+..
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~---------~~~~~~~~~~~~~~~~td~~   72 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALA---------KRMVEKAGVPIEIHLTLDRR   72 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHH---------HHHHHHTTCCCEEEEESCHH
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHH---------HHHHHhcCCCceeeecCCch
Confidence            489999999876  445554443   33 489999987543211 110000         0001111      1236788


Q ss_pred             HHHhhCCEEEEecCC
Q 024297          221 EFASKADVVVCCLSL  235 (269)
Q Consensus       221 ell~~aDvvv~~lp~  235 (269)
                      +.++.||+|+++...
T Consensus        73 ~al~gaDvVv~ta~~   87 (169)
T d1s6ya1          73 RALDGADFVTTQFRV   87 (169)
T ss_dssp             HHHTTCSEEEECCCT
T ss_pred             hhcCCCCEEEEcccc
Confidence            999999999999863

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.93  E-value=0.0034  Score=50.77  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=32.0

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      +|+|.|||.|.-|...|..|+..|++|++++++.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            6899999999999999999999999999999754

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.92  E-value=0.0026  Score=49.29  Aligned_cols=74  Identities=8%  Similarity=-0.087  Sum_probs=42.7

Q ss_pred             CEEEEEecCchHHHHHH-----HhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          154 KTVFILGFGNIGVELAK-----RLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~-----~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      .||.|||.|++|...+-     ....+ +-++..+|.+..+.....+    +  .+.... .........+..+.++.||
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d----~--~~~~~~-~~~~~~~t~~~~~~l~~aD   73 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVD----F--VKRLVK-DRFKVLISDTFEGAVVDAK   73 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHH----H--HHHHHT-TSSEEEECSSHHHHHTTCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHH----H--HHhhhc-cCceEEEecCcccccCCCC
Confidence            37999999999866653     22223 4589999987654211100    0  000000 0000012357889999999


Q ss_pred             EEEEecC
Q 024297          228 VVVCCLS  234 (269)
Q Consensus       228 vvv~~lp  234 (269)
                      +|+++.-
T Consensus        74 vVVita~   80 (162)
T d1up7a1          74 YVIFQFR   80 (162)
T ss_dssp             EEEECCC
T ss_pred             EEEEecc
Confidence            9999864

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.89  E-value=0.0066  Score=47.26  Aligned_cols=39  Identities=21%  Similarity=0.354  Sum_probs=34.7

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  188 (269)
                      --.|.+|.|+|.|.+|...++.++.+|+ +|++.|++..+
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~k   64 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDK   64 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHH
Confidence            3577899999999999999999999997 79999987665

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.019  Score=48.85  Aligned_cols=137  Identities=15%  Similarity=0.115  Sum_probs=87.2

Q ss_pred             CcEEEecC-CCCCCCcchHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEec---CchHHHHHHHhcc
Q 024297           99 GIKVARIP-GDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF---GNIGVELAKRLRP  174 (269)
Q Consensus        99 gI~v~n~~-~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~---G~iG~~~a~~l~~  174 (269)
                      .|+|.|.. +.   +..++  .+|+-++.+...+                 ..+.|++|+++|-   +++.+.++..+..
T Consensus       121 ~vPVINAg~~~---~~HP~--Q~LaD~~Ti~e~~-----------------g~l~~~~i~~vGD~~~~~v~~S~~~~~~~  178 (310)
T d1tuga1         121 NVPVLNAGDGS---NQHPT--QTLLDLFTIQETQ-----------------GRLDNLHVAMVGDLKYGRTVHSLTQALAK  178 (310)
T ss_dssp             TSCEEEEEETT---SCCHH--HHHHHHHHHHHHH-----------------SCSSSCEEEEESCTTTCHHHHHHHHHHTT
T ss_pred             CccEEECCCCc---ccchH--HHHHHHHHHHHHc-----------------CCcccceEEEEeccccCcchHHHHHHHHh
Confidence            69999974 33   34677  6677777776653                 3599999999996   7899999999999


Q ss_pred             CC-CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCCc----------cccCcC
Q 024297          175 FG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNK----------QTVKLC  243 (269)
Q Consensus       175 ~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t~----------~t~~li  243 (269)
                      +| ++|.++.+..-......   ....-.+|.      ......++++.++++|+|....--..          ....-+
T Consensus       179 ~~~~~~~i~~P~~~~~~~~~---~~~~~~~~~------~~~~~~d~~~a~~~aDvvy~~~~~~e~~~~~~~~~~~~~~~v  249 (310)
T d1tuga1         179 FDGNRFYFIAPDALAMPQYI---LDMLDEKGI------AWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVL  249 (310)
T ss_dssp             SSSCEEEEECCGGGCCCHHH---HHHHHTTTC------CEEEESCGGGTTTTCSEEEECCCCGGGSCHHHHHTTTTSSCB
T ss_pred             ccCceEEEeCCcccccchhc---ccccccccc------eeeeeechhhhccCCceeeecccchhhhcccchhhhhhhhhh
Confidence            85 78998876432111000   000000000      00023678899999999886421110          112457


Q ss_pred             CHHHHhhhCCCCcEEEEcc-CCCCc
Q 024297          244 SSSLSSKSMFFATYVVFMF-QGHGV  267 (269)
Q Consensus       244 ~~~~l~~~mk~ga~lIN~~-RG~~v  267 (269)
                      +.+.++ .++++++|.-+. ||.=|
T Consensus       250 ~~~~l~-~a~~~~i~MHcLPRg~EI  273 (310)
T d1tuga1         250 RASDLH-NAKANMKVLHPLPRVDEI  273 (310)
T ss_dssp             CGGGGT-TSCSSCEEECCSCCSSSB
T ss_pred             hHHHHh-cCCCCcEEeeCCCCCCEe
Confidence            888899 899999987654 66433

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.87  E-value=0.0073  Score=46.70  Aligned_cols=39  Identities=21%  Similarity=0.405  Sum_probs=34.6

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCc
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASH  189 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~  189 (269)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.+++..+.
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~   66 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF   66 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHH
Confidence            477899999999999999999999985 899999887663

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=95.87  E-value=0.0037  Score=47.91  Aligned_cols=94  Identities=18%  Similarity=0.117  Sum_probs=64.5

Q ss_pred             cCCEEEEEec---CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          152 LGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       152 ~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      .|.+|+++|=   +++++.++..+..||++|.++.+..-...                .   .......++++.++.+|+
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~----------------~---~~~~~~~~~~ea~~~aDv   62 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDE----------------E---NTFGTYVSMDEAVESSDV   62 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhcc----------------c---cceeEEEechhccccCce
Confidence            5889999994   68999999999999999999876432210                0   111134678899999999


Q ss_pred             EEEecCCCcc-----------ccCcCCHHHHhhhCCCCcEEEEcc---CCC
Q 024297          229 VVCCLSLNKQ-----------TVKLCSSSLSSKSMFFATYVVFMF---QGH  265 (269)
Q Consensus       229 vv~~lp~t~~-----------t~~li~~~~l~~~mk~ga~lIN~~---RG~  265 (269)
                      |...-.-...           ...-++.+.+. .++++++|.-+.   ||.
T Consensus        63 iy~~r~q~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~MH~LP~~Rg~  112 (151)
T d2at2a2          63 VMLLRIQNERHQSAVSQEGYLNKYGLTVERAE-RMKRHAIIMHPAPVNRGV  112 (151)
T ss_pred             eeeeEEEEcccccchhhHHhhhhhcchhhhhh-hcccCeEEecCCccccCC
Confidence            8776332111           11234556667 788999988765   663

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0016  Score=53.45  Aligned_cols=40  Identities=20%  Similarity=0.256  Sum_probs=35.7

Q ss_pred             ccccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          149 ETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       149 ~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ++|+||++.|.|.+ .||+++|+.|...|++|++.+|+.+.
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~   41 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSG   41 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            47999999999955 59999999999999999999987654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0045  Score=44.94  Aligned_cols=34  Identities=32%  Similarity=0.360  Sum_probs=31.5

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      +++.|||.|.+|-++|..|+.+|.+|+.+.+...
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence            6899999999999999999999999999998653

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.71  E-value=0.0032  Score=50.22  Aligned_cols=37  Identities=30%  Similarity=0.452  Sum_probs=32.8

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  188 (269)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++++++..+
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~r   62 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPAR   62 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchh
Confidence            57799999999999999999999988 89999887654

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.68  E-value=0.026  Score=43.07  Aligned_cols=106  Identities=13%  Similarity=0.085  Sum_probs=63.3

Q ss_pred             ccCCEEEEEe-c-CchHHHHHHHhccCCCEEEEEcCCCCCccccc-cccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          151 LLGKTVFILG-F-GNIGVELAKRLRPFGVKIIATKRSWASHSQVS-CQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       151 l~g~~vgIiG-~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      |.|++|+++| . .++.+.++..+..||++|..+.+..-...... .....+...++      .......++++.++.+|
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~------~~i~~~~d~~~ai~~aD   74 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETD------GSVSFTSNLEEALAGAD   74 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHC------CEEEEESCHHHHHTTCS
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcC------CceEEEecHHHhhhhhh
Confidence            5799999999 3 68999999999999999999986432111000 00000000000      01112368999999999


Q ss_pred             EEEEecCCCcc------------ccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          228 VVVCCLSLNKQ------------TVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       228 vvv~~lp~t~~------------t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +|....--...            ....++.+.+...+|++++|.-+.
T Consensus        75 viyt~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~l  121 (161)
T d1vlva2          75 VVYTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL  121 (161)
T ss_dssp             EEEECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             heeccceeeecccccchhhhccccceeeeehhhhcccCCCeeEecCC
Confidence            99886532110            112233444442578899988765

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.68  E-value=0.012  Score=42.22  Aligned_cols=63  Identities=17%  Similarity=0.149  Sum_probs=46.5

Q ss_pred             cCCEEEEEec----------CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHH
Q 024297          152 LGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE  221 (269)
Q Consensus       152 ~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  221 (269)
                      ..|+|||+|+          .+-.-.+.+.|...|++|.+|||......                  .........++++
T Consensus        14 ~~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~------------------~~~~~~~~~~l~~   75 (108)
T d1dlja3          14 PVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE------------------SEDQSVLVNDLEN   75 (108)
T ss_dssp             SSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC------------------TTCCSEECCCHHH
T ss_pred             CCCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhH------------------hccCCEEEeCHHH
Confidence            3368999995          57788999999999999999998765421                  1000112368999


Q ss_pred             HHhhCCEEEEe
Q 024297          222 FASKADVVVCC  232 (269)
Q Consensus       222 ll~~aDvvv~~  232 (269)
                      ++..+|+|+..
T Consensus        76 ~~~~sDiII~~   86 (108)
T d1dlja3          76 FKKQANIIVTN   86 (108)
T ss_dssp             HHHHCSEEECS
T ss_pred             HHhhCCEEEEc
Confidence            99999977754

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.67  E-value=0.0014  Score=54.97  Aligned_cols=38  Identities=32%  Similarity=0.302  Sum_probs=34.1

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+|+.+
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~   40 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSE   40 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999995 56999999999999999999998754

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.66  E-value=0.0036  Score=43.69  Aligned_cols=36  Identities=17%  Similarity=0.264  Sum_probs=31.5

Q ss_pred             CCEEEEEecCchHH-HHHHHhccCCCEEEEEcCCCCC
Q 024297          153 GKTVFILGFGNIGV-ELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       153 g~~vgIiG~G~iG~-~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      +++|=+||.|.+|. ++|+.|+..|++|.++|+...+
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~   37 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETE   37 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCCh
Confidence            36788999999998 7799999999999999987544

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.66  E-value=0.0029  Score=49.53  Aligned_cols=95  Identities=16%  Similarity=0.096  Sum_probs=61.8

Q ss_pred             cCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH---h--h
Q 024297          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA---S--K  225 (269)
Q Consensus       152 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~--~  225 (269)
                      .|.+|.|.|. |.+|+.+++.++..|++|++..++.++... .       -..| .+..+.. .+....+..+   .  .
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~-~-------~~~G-a~~vi~~-~~~~~~~~~~~~~~~~G   98 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAY-L-------KQIG-FDAAFNY-KTVNSLEEALKKASPDG   98 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH-H-------HHTT-CSEEEET-TSCSCHHHHHHHHCTTC
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHH-H-------Hhhh-hhhhccc-ccccHHHHHHHHhhcCC
Confidence            6889999998 669999999999999999999876543111 0       0111 1112211 1222233333   2  3


Q ss_pred             CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          226 ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      .|+|+-++.  .+   . -.+.++ .++++..++.+|.
T Consensus        99 vd~v~D~vG--~~---~-~~~~~~-~l~~~G~~v~~G~  129 (182)
T d1v3va2          99 YDCYFDNVG--GE---F-LNTVLS-QMKDFGKIAICGA  129 (182)
T ss_dssp             EEEEEESSC--HH---H-HHHHGG-GEEEEEEEEECCC
T ss_pred             CceeEEecC--ch---h-hhhhhh-hccCCCeEEeecc
Confidence            899999885  12   1 245778 9999999999875

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.61  E-value=0.0035  Score=51.42  Aligned_cols=40  Identities=28%  Similarity=0.477  Sum_probs=35.9

Q ss_pred             ccccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          149 ETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       149 ~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ++|.||++.|.|.+ .||+++|+.|...|++|++.+|+...
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   43 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA   43 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch
Confidence            46899999999976 59999999999999999999997655

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.60  E-value=0.0052  Score=44.85  Aligned_cols=34  Identities=21%  Similarity=0.309  Sum_probs=31.5

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      +++.|||.|-||-++|..+..+|++|+.+.+...
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            7899999999999999999999999999987653

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.59  E-value=0.0032  Score=48.95  Aligned_cols=37  Identities=19%  Similarity=0.231  Sum_probs=32.9

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWAS  188 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~  188 (269)
                      .+|+|.|||.|..|-.+|..|..+|++ |++++++...
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence            578999999999999999999999994 9999976543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.53  E-value=0.0034  Score=46.16  Aligned_cols=35  Identities=20%  Similarity=0.380  Sum_probs=32.3

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      +++.|||.|-||-++|+.+..+|++|+.+.++...
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI   60 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence            68999999999999999999999999999986644

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=95.52  E-value=0.0034  Score=50.94  Aligned_cols=74  Identities=15%  Similarity=0.085  Sum_probs=44.4

Q ss_pred             cCCEEEEEecCchHHH-HHHHhccC-CCEEE-EEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh--hC
Q 024297          152 LGKTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KA  226 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~-~a~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~a  226 (269)
                      +--+|||||+|.+|+. ++..++.. +++|. ++|+++++......       ..++..   .....+.++++++.  +.
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~-------~~~i~~---~~~~~~~d~~ell~~~~i  101 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAA-------EYGVDP---RKIYDYSNFDKIAKDPKI  101 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHH-------HTTCCG---GGEECSSSGGGGGGCTTC
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHH-------hhcccc---ccccccCchhhhcccccc
Confidence            3458999999999974 66766665 78877 56665543211000       001000   00113467888886  57


Q ss_pred             CEEEEecCC
Q 024297          227 DVVVCCLSL  235 (269)
Q Consensus       227 Dvvv~~lp~  235 (269)
                      |+|+++.|.
T Consensus       102 D~V~I~tp~  110 (221)
T d1h6da1         102 DAVYIILPN  110 (221)
T ss_dssp             CEEEECSCG
T ss_pred             eeeeeccch
Confidence            899999873

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.50  E-value=0.0096  Score=45.79  Aligned_cols=94  Identities=14%  Similarity=0.188  Sum_probs=55.8

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-----
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----  224 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----  224 (269)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.+++..+.....+        -| .+..+......++..+.++     
T Consensus        27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~--------lG-a~~~i~~~~~~~~~~~~~~~~~~~   97 (176)
T d2fzwa2          27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE--------FG-ATECINPQDFSKPIQEVLIEMTDG   97 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH--------HT-CSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH--------hC-CcEEEeCCchhhHHHHHHHHHcCC
Confidence            467899999999999999999999997 67777776554211110        00 0111111112244554443     


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEE
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVV  259 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lI  259 (269)
                      ..|+++-++.. +.   . .+..+. .+++|..++
T Consensus        98 g~D~vid~~G~-~~---~-~~~~~~-~~~~g~~~~  126 (176)
T d2fzwa2          98 GVDYSFECIGN-VK---V-MRAALE-ACHKGWGVS  126 (176)
T ss_dssp             CBSEEEECSCC-HH---H-HHHHHH-TBCTTTCEE
T ss_pred             CCcEeeecCCC-HH---H-HHHHHH-hhcCCceeE
Confidence            47999998752 22   2 133455 677764443

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0063  Score=44.74  Aligned_cols=34  Identities=32%  Similarity=0.333  Sum_probs=31.7

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      |++.|||.|.||-++|..|..+|.+|+.+.++..
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            7899999999999999999999999999998653

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.48  E-value=0.0017  Score=49.47  Aligned_cols=35  Identities=20%  Similarity=0.280  Sum_probs=29.0

Q ss_pred             CEEEEEecCchHHHHHHHhccCC--CEEEEEcCCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWAS  188 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~  188 (269)
                      .||+|||.|.+|..+|..+...|  -++..+|.+...
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~   38 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKER   38 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecccc
Confidence            48999999999999998887555  489999986543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.44  E-value=0.003  Score=48.73  Aligned_cols=95  Identities=16%  Similarity=0.178  Sum_probs=58.5

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCC-HHHHHh---
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED-IFEFAS---  224 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell~---  224 (269)
                      -.|.+|.|+|. |.+|..+++.++..|. +|++++++..+... ..       ..| ++.... . ...+ .++..+   
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~-~~-------~~G-a~~~i~-~-~~~~~~~~~~~~~~   94 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEA-AK-------RAG-ADYVIN-A-SMQDPLAEIRRITE   94 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHH-HH-------HHT-CSEEEE-T-TTSCHHHHHHHHTT
T ss_pred             CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHH-HH-------HcC-Cceeec-c-CCcCHHHHHHHHhh
Confidence            35789999995 9999999999999985 89999877544211 10       011 001111 1 1123 333332   


Q ss_pred             --hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          225 --KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       225 --~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                        ..|+++-+.. .++   .++ ..+. .++++..++.+|
T Consensus        95 ~~~~d~vid~~g-~~~---~~~-~a~~-~l~~~G~iv~~G  128 (170)
T d1jvba2          95 SKGVDAVIDLNN-SEK---TLS-VYPK-ALAKQGKYVMVG  128 (170)
T ss_dssp             TSCEEEEEESCC-CHH---HHT-TGGG-GEEEEEEEEECC
T ss_pred             cccchhhhcccc-cch---HHH-hhhh-hcccCCEEEEec
Confidence              3788888875 222   222 2466 889999988886

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.43  E-value=0.0037  Score=45.93  Aligned_cols=32  Identities=22%  Similarity=0.352  Sum_probs=29.8

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  185 (269)
                      +++.|||.|.||-++|..|+.+|.+|+.+.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            57999999999999999999999999999764

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.41  E-value=0.007  Score=44.16  Aligned_cols=82  Identities=15%  Similarity=0.270  Sum_probs=55.9

Q ss_pred             CEEEEEe----cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          154 KTVFILG----FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       154 ~~vgIiG----~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      |+|+|+|    -|+.|..+.+.|+.+|++|+.++++...-                  ....   .+.++.++-..-|++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i------------------~G~~---~y~sl~~lp~~~D~v   60 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI------------------EGLK---CYRSVRELPKDVDVI   60 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE------------------TTEE---CBSSGGGSCTTCCEE
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc------------------cCcc---ccccchhccccceEE
Confidence            6899999    56889999999999999999998754320                  1111   346777777788999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEE
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVF  260 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN  260 (269)
                      ++++| .+.+..++.+ ..+  +...++++.
T Consensus        61 vi~vp-~~~~~~~l~~-~~~--~g~k~v~~~   87 (116)
T d1y81a1          61 VFVVP-PKVGLQVAKE-AVE--AGFKKLWFQ   87 (116)
T ss_dssp             EECSC-HHHHHHHHHH-HHH--TTCCEEEEC
T ss_pred             EEEeC-HHHHHHHHHH-HHh--cCCceEEec
Confidence            99998 3344444443 333  333455544

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.40  E-value=0.008  Score=43.51  Aligned_cols=37  Identities=22%  Similarity=0.229  Sum_probs=33.5

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      ..+++|.|+|.|.+|-++|..|..+|.+|+.+.+...
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence            3578999999999999999999999999999998653

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.38  E-value=0.0047  Score=51.12  Aligned_cols=38  Identities=24%  Similarity=0.225  Sum_probs=33.8

Q ss_pred             cccCCEEEEEec-C--chHHHHHHHhccCCCEEEEEcCCCC
Q 024297          150 TLLGKTVFILGF-G--NIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       150 ~l~g~~vgIiG~-G--~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      -|.||++.|.|. |  .||.++|+.|...|++|+..+|+..
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            388999999996 4  5999999999999999999998743

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.37  E-value=0.0072  Score=46.71  Aligned_cols=62  Identities=18%  Similarity=0.186  Sum_probs=39.2

Q ss_pred             CEEEEEecCchHHHHHHHhccCC----CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh--hCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KAD  227 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aD  227 (269)
                      -+|||||+|.+|+..++.++...    ..|...+..  +.....              ...    ...++++++.  +.|
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~--~~~~~~--------------~~~----~~~~~~e~l~~~~iD   67 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSR--RELGSL--------------DEV----RQISLEDALRSQEID   67 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECS--SCCCEE--------------TTE----EBCCHHHHHHCSSEE
T ss_pred             cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccch--HHHHHh--------------hcc----CcCCHHHHHhCCCcc
Confidence            37999999999999999888653    333333221  110000              000    2357889887  568


Q ss_pred             EEEEecCC
Q 024297          228 VVVCCLSL  235 (269)
Q Consensus       228 vvv~~lp~  235 (269)
                      +|+++.|.
T Consensus        68 ~V~I~tp~   75 (172)
T d1lc0a1          68 VAYICSES   75 (172)
T ss_dssp             EEEECSCG
T ss_pred             hhhhcccc
Confidence            89999874

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=95.37  E-value=0.0037  Score=48.48  Aligned_cols=93  Identities=15%  Similarity=0.133  Sum_probs=57.7

Q ss_pred             cCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh------
Q 024297          152 LGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS------  224 (269)
Q Consensus       152 ~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~------  224 (269)
                      .|++|.|+|.|. +|+.+++.++.+|++|++.+++..+.+...+        -| .+..++ + ...++.+-+.      
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~--------lG-a~~vi~-~-~~~d~~~~v~~~t~g~   96 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK--------AG-AWQVIN-Y-REEDLVERLKEITGGK   96 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH--------HT-CSEEEE-T-TTSCHHHHHHHHTTTC
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh--------cC-CeEEEE-C-CCCCHHHHHHHHhCCC
Confidence            578999996555 9999999999999999999987655321110        01 011111 1 1234433332      


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ..|+|+-++.  .++    -...+. .++++..++..+
T Consensus        97 g~d~v~d~~g--~~~----~~~~~~-~l~~~G~~v~~g  127 (179)
T d1qora2          97 KVRVVYDSVG--RDT----WERSLD-CLQRRGLMVSFG  127 (179)
T ss_dssp             CEEEEEECSC--GGG----HHHHHH-TEEEEEEEEECC
T ss_pred             CeEEEEeCcc--HHH----HHHHHH-HHhcCCeeeecc
Confidence            3588777764  222    134667 788888777765

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.35  E-value=0.013  Score=48.03  Aligned_cols=38  Identities=26%  Similarity=0.434  Sum_probs=33.9

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      +|.||++.|.|. +.||+++|+.|...|++|++++|+.+
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNS   40 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            488999999996 46999999999999999999998653

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.33  E-value=0.029  Score=43.81  Aligned_cols=90  Identities=17%  Similarity=0.149  Sum_probs=54.7

Q ss_pred             EEEEEe-cCchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccc-cCCCCCHHHHHhhCCEEEE
Q 024297          155 TVFILG-FGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KGCHEDIFEFASKADVVVC  231 (269)
Q Consensus       155 ~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~~aDvvv~  231 (269)
                      +|||+| .|-+|+++.++|..+ ..+|.++..+........     ..+|+     .... .....+.+++..++|+|++
T Consensus         3 kVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~-----~~~p~-----~~~~~~~~~~~~~~~~~~~dvvf~   72 (176)
T d1vkna1           3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLE-----EIFPS-----TLENSILSEFDPEKVSKNCDVLFT   72 (176)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHH-----HHCGG-----GCCCCBCBCCCHHHHHHHCSEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCccc-----ccCch-----hhccccccccCHhHhccccceEEE
Confidence            799999 799999999999875 457666643222111110     00111     1111 1123567788889999999


Q ss_pred             ecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          232 CLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       232 ~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ++|...      ..+... .. .+..+|+.|
T Consensus        73 a~p~~~------s~~~~~-~~-~~~~VIDlS   95 (176)
T d1vkna1          73 ALPAGA------SYDLVR-EL-KGVKIIDLG   95 (176)
T ss_dssp             CCSTTH------HHHHHT-TC-CSCEEEESS
T ss_pred             ccccHH------HHHHHH-hh-ccceEEecC
Confidence            999542      233444 43 578888876

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.33  E-value=0.02  Score=45.03  Aligned_cols=107  Identities=14%  Similarity=0.023  Sum_probs=64.9

Q ss_pred             cccCCEEEEEe-c-CchHHHHHHHhccCCCEEEEEcCCCCCccccc-cccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          150 TLLGKTVFILG-F-GNIGVELAKRLRPFGVKIIATKRSWASHSQVS-CQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       150 ~l~g~~vgIiG-~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      .|.|.||+++| . .++.+.++..+..||++|.++.+..-...... .....+.-..|      .......++++.++.+
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~------~~~~~~~d~~eai~~a   75 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESG------AKLTLTEDPKEAVKGV   75 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHT------CEEEEESCHHHHTTTC
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccC------CeEEEEeChhhccccc
Confidence            58899999999 3 58999999999999999999987432110000 00000000000      0011236899999999


Q ss_pred             CEEEEecCCCcc-------------ccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          227 DVVVCCLSLNKQ-------------TVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       227 Dvvv~~lp~t~~-------------t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      |+|....=-...             ....++.+.+...++++++|.-+.
T Consensus        76 DvVyt~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          76 DFVHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             SEEEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             cEEEeehhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            998876531111             112344444432678999998765

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.32  E-value=0.0022  Score=53.75  Aligned_cols=37  Identities=30%  Similarity=0.344  Sum_probs=33.4

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      |.||++.|.|. +.||+++|+.|...|++|++.+|+.+
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   39 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNED   39 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            78999999996 46999999999999999999998754

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.29  E-value=0.011  Score=46.18  Aligned_cols=96  Identities=17%  Similarity=0.095  Sum_probs=61.8

Q ss_pred             cccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH---
Q 024297          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA---  223 (269)
Q Consensus       148 ~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---  223 (269)
                      +....|.+|.|.| .|.+|....|.++.+|++|++..++..+.....         ..+.+.....   ....++..   
T Consensus        27 g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~---------~lGa~~vi~~---~~~~~~~~~~~   94 (176)
T d1xa0a2          27 GLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR---------VLGAKEVLAR---EDVMAERIRPL   94 (176)
T ss_dssp             TCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH---------HTTCSEEEEC---C---------C
T ss_pred             CCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHH---------hcccceeeec---chhHHHHHHHh
Confidence            4556789999999 699999999999999999999998776632111         1111111111   11112221   


Q ss_pred             --hhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          224 --SKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       224 --~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                        +..|+|+-++...      .-...+. .|+++..++.++
T Consensus        95 ~~~gvD~vid~vgg~------~~~~~l~-~l~~~Griv~~G  128 (176)
T d1xa0a2          95 DKQRWAAAVDPVGGR------TLATVLS-RMRYGGAVAVSG  128 (176)
T ss_dssp             CSCCEEEEEECSTTT------THHHHHH-TEEEEEEEEECS
T ss_pred             hccCcCEEEEcCCch------hHHHHHH-HhCCCceEEEee
Confidence              2568888877521      2345778 899999999887

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=95.28  E-value=0.022  Score=43.47  Aligned_cols=105  Identities=14%  Similarity=0.052  Sum_probs=64.9

Q ss_pred             ccCCEEEEEec---CchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC
Q 024297          151 LLGKTVFILGF---GNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (269)
Q Consensus       151 l~g~~vgIiG~---G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (269)
                      +.|.+|+++|=   |++.+.++..+..||. .++++.+.........   ....-.+|      .......+++++++++
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~---~~~~~~~~------~~~~~~~d~~~a~~~a   72 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYI---LDMLDEKG------IAWSLHSSIEEVMAEV   72 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHH---HHHHHHTT------CCEEECSCSTTTGGGC
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHH---HHHHhhhc------cccccccCHHHHhCcC
Confidence            67999999994   6699999999999975 5666654322211000   00000011      0011236788999999


Q ss_pred             CEEEEecCCCc----------cccCcCCHHHHhhhCCCCcEEEEcc-CCC
Q 024297          227 DVVVCCLSLNK----------QTVKLCSSSLSSKSMFFATYVVFMF-QGH  265 (269)
Q Consensus       227 Dvvv~~lp~t~----------~t~~li~~~~l~~~mk~ga~lIN~~-RG~  265 (269)
                      |+|....--..          .....++.+.++ .++++++|.-+. ||.
T Consensus        73 Dvvy~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~a~~~~i~mHcLPRg~  121 (160)
T d1ekxa2          73 DILYMTRVQKERLDPSEYANVKAQFVLRASDLH-NAKANMKVLHPLPRVD  121 (160)
T ss_dssp             SEEEECCCCGGGCCGGGGGGCSCSCCBCGGGGT-TCCTTCEEECCSCCSS
T ss_pred             ceEEeecccccccchHHHHHHHHHhhccHHHHH-hcCcceeeecCCCcCC
Confidence            99987633211          122445777888 899999988765 554

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=95.25  E-value=0.0031  Score=49.73  Aligned_cols=100  Identities=17%  Similarity=0.228  Sum_probs=58.6

Q ss_pred             ccCCEEEEE--ecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcccccccccccc-CCCCC----HHHHH
Q 024297          151 LLGKTVFIL--GFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCHED----IFEFA  223 (269)
Q Consensus       151 l~g~~vgIi--G~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----l~ell  223 (269)
                      -.|.++.|+  |.|.+|+...+.++.+|++|++..++.+..+.....     ++.-+.+..+... ....+    +.++.
T Consensus        27 ~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~-----~~~lGad~vi~~~~~~~~~~~~~v~~~~  101 (189)
T d1gu7a2          27 TPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVAS-----LKELGATQVITEDQNNSREFGPTIKEWI  101 (189)
T ss_dssp             CTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHH-----HHHHTCSEEEEHHHHHCGGGHHHHHHHH
T ss_pred             CCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhh-----hhhccccEEEeccccchhHHHHHHHHHH
Confidence            357788888  679999999999999999999987765442110000     0000000111000 00111    22222


Q ss_pred             ----hhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          224 ----SKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       224 ----~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                          ...|+++-++. .+.     ....++ .|+++..+|.+|
T Consensus       102 ~~~g~~vdvv~D~vg-~~~-----~~~~~~-~l~~~G~~v~~G  137 (189)
T d1gu7a2         102 KQSGGEAKLALNCVG-GKS-----STGIAR-KLNNNGLMLTYG  137 (189)
T ss_dssp             HHHTCCEEEEEESSC-HHH-----HHHHHH-TSCTTCEEEECC
T ss_pred             hhccCCceEEEECCC-cch-----hhhhhh-hhcCCcEEEEEC
Confidence                23788888764 111     245678 999999999986

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.20  E-value=0.0043  Score=50.61  Aligned_cols=37  Identities=24%  Similarity=0.307  Sum_probs=33.5

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      |+||++.|.|. +.||+++|+.|...|++|++.+|+.+
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~   39 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEE   39 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            78999999996 56999999999999999999998753

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.19  E-value=0.0092  Score=43.70  Aligned_cols=37  Identities=24%  Similarity=0.265  Sum_probs=33.2

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      ..+++|.|||.|-+|-++|..|..+|.+|+.+.+...
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence            3568999999999999999999999999999987653

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.18  E-value=0.0028  Score=48.15  Aligned_cols=33  Identities=9%  Similarity=0.135  Sum_probs=29.8

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      .+.|+|+|.+|+.+++.|...|.+|++++..++
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~   37 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPE   37 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccch
Confidence            478999999999999999999999999987653

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.13  E-value=0.02  Score=43.34  Aligned_cols=68  Identities=21%  Similarity=0.284  Sum_probs=39.6

Q ss_pred             CEEEEEec-CchHHHHHHHhcc---C-CCEEEEEcCCCCCccccccccchhhhccccccccccccC--CCCCHHHHHhhC
Q 024297          154 KTVFILGF-GNIGVELAKRLRP---F-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKA  226 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~---~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~a  226 (269)
                      |+|||||. |-+|+.+.++|..   | -.++.++..+........     +         ......  ...+. +.++.+
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~-----~---------~~~~~~~~~~~~~-~~~~~~   66 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPS-----F---------GGTTGTLQDAFDL-EALKAL   66 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCG-----G---------GTCCCBCEETTCH-HHHHTC
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccccc-----c---------cCCceeeecccch-hhhhcC
Confidence            58999995 9999999986643   3 346766654433211100     0         000000  11222 346899


Q ss_pred             CEEEEecCCC
Q 024297          227 DVVVCCLSLN  236 (269)
Q Consensus       227 Dvvv~~lp~t  236 (269)
                      |++++++|..
T Consensus        67 DivF~a~~~~   76 (146)
T d1t4ba1          67 DIIVTCQGGD   76 (146)
T ss_dssp             SEEEECSCHH
T ss_pred             cEEEEecCch
Confidence            9999999843

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=95.09  E-value=0.0051  Score=46.21  Aligned_cols=88  Identities=10%  Similarity=0.127  Sum_probs=60.1

Q ss_pred             cCCEEEEEec----CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          152 LGKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       152 ~g~~vgIiG~----G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      .-|+|+|||.    ++.|..+.+.|+.+|+++..+.++....                  +. .....+.++.++-..-|
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~------------------~i-~g~~~~~~l~~i~~~iD   72 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE------------------EL-FGEEAVASLLDLKEPVD   72 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS------------------EE-TTEECBSSGGGCCSCCS
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccc------------------ee-eceecccchhhccCCCc
Confidence            4579999996    7899999999999999999998754321                  11 11113456777667789


Q ss_pred             EEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          228 VVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       228 vvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      ++++++| .+.+..++.+ ..+  +...++++..|
T Consensus        73 ~v~v~~p-~~~v~~~v~~-~~~--~g~k~i~~q~G  103 (136)
T d1iuka_          73 ILDVFRP-PSALMDHLPE-VLA--LRPGLVWLQSG  103 (136)
T ss_dssp             EEEECSC-HHHHTTTHHH-HHH--HCCSCEEECTT
T ss_pred             eEEEecc-HHHHHHHHHH-HHh--hCCCeEEEecC
Confidence            9999998 4455556554 333  34456666543

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.08  E-value=0.011  Score=44.72  Aligned_cols=33  Identities=33%  Similarity=0.403  Sum_probs=27.0

Q ss_pred             CEEEEEe-cCchHHHHHHHhc---cCCCEEEEEcCCC
Q 024297          154 KTVFILG-FGNIGVELAKRLR---PFGVKIIATKRSW  186 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~---~~G~~V~~~~~~~  186 (269)
                      .||+||| .|.+|+.+|..+.   .++-++..+|...
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            4899999 5999999998764   4577999999743

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.06  E-value=0.011  Score=43.33  Aligned_cols=36  Identities=31%  Similarity=0.385  Sum_probs=32.8

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      .++++.|||.|-+|-++|..|+..|.+|+.+.+...
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence            357999999999999999999999999999998654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.00  E-value=0.0088  Score=45.22  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=31.3

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCC--CEEEEEcCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFG--VKIIATKRSW  186 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~  186 (269)
                      +||+|.|||.|.+|-++|..|+.+|  .+|+.+++.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            5899999999999999999999876  5899998765

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.99  E-value=0.0084  Score=44.21  Aligned_cols=33  Identities=21%  Similarity=0.349  Sum_probs=31.1

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      +++.|||.|-||-++|..+..+|.+|+.+.+..
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence            689999999999999999999999999999764

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.0023  Score=53.07  Aligned_cols=40  Identities=20%  Similarity=0.393  Sum_probs=35.5

Q ss_pred             cccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       148 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      |..|.||++.|.|. +.||+++|+.|...|++|++.+|+.+
T Consensus         1 g~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   41 (250)
T d1ydea1           1 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDES   41 (250)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            34689999999995 78999999999999999999998654

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.95  E-value=0.013  Score=42.69  Aligned_cols=34  Identities=32%  Similarity=0.409  Sum_probs=31.3

Q ss_pred             CCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      ++++.|||.|.+|-++|..|..+|.+|+.+.+..
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence            3689999999999999999999999999999754

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.87  E-value=0.017  Score=47.10  Aligned_cols=34  Identities=29%  Similarity=0.444  Sum_probs=30.6

Q ss_pred             CCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCC
Q 024297          153 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       153 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      +++|.|.|. |-||+.+++.|...|.+|++++|+.
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            367999996 9999999999999999999999753

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=94.84  E-value=0.029  Score=42.53  Aligned_cols=92  Identities=20%  Similarity=0.167  Sum_probs=48.3

Q ss_pred             CEEEEEe-cCchHHHHHHHhcc---C-CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          154 KTVFILG-FGNIGVELAKRLRP---F-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~---~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      .+||||| .|-+|+++.++|..   + ..++..+..+........     +.  .   .....  ....+ .+.+.++|+
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~-----~~--~---~~~~~--~~~~~-~~~~~~~Dv   67 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPN-----FG--K---DAGML--HDAFD-IESLKQLDA   67 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCC-----SS--S---CCCBC--EETTC-HHHHTTCSE
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccc-----cC--C---cceee--ecccc-hhhhccccE
Confidence            4799999 79999999997753   2 356666543322111100     00  0   00000  01122 255789999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +++|+|.. .+..+. ...++  -...+++|+.|
T Consensus        68 vF~alp~~-~s~~~~-~~l~~--~g~~~~VIDlS   97 (147)
T d1mb4a1          68 VITCQGGS-YTEKVY-PALRQ--AGWKGYWIDAA   97 (147)
T ss_dssp             EEECSCHH-HHHHHH-HHHHH--TTCCSEEEESS
T ss_pred             EEEecCch-HHHHHh-HHHHH--cCCceEEEeCC
Confidence            99999943 222222 11222  23345677765

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.82  E-value=0.011  Score=42.69  Aligned_cols=34  Identities=24%  Similarity=0.429  Sum_probs=31.5

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      +++.|||.|.+|-++|..|..+|.+|+.+.+...
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence            7899999999999999999999999999987643

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.82  E-value=0.0086  Score=47.10  Aligned_cols=72  Identities=21%  Similarity=0.177  Sum_probs=44.8

Q ss_pred             CEEEEEe-cCchHHHHHHHhccCCC--EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          154 KTVFILG-FGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      +||.|.| .|.||+++++.|...|.  .|+...|++.+....          .....-.........++.++++.+|.|+
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~----------~~~~~~~~~d~~~~~~~~~~~~~~d~vi   73 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI----------GGEADVFIGDITDADSINPAFQGIDALV   73 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT----------TCCTTEEECCTTSHHHHHHHHTTCSEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc----------cCCcEEEEeeeccccccccccccceeeE
Confidence            5899999 79999999999998885  466666654321100          0000001111113346778889999988


Q ss_pred             EecCC
Q 024297          231 CCLSL  235 (269)
Q Consensus       231 ~~lp~  235 (269)
                      .+...
T Consensus        74 ~~a~~   78 (252)
T d2q46a1          74 ILTSA   78 (252)
T ss_dssp             ECCCC
T ss_pred             EEEee
Confidence            77643

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=94.73  E-value=0.018  Score=48.77  Aligned_cols=38  Identities=26%  Similarity=0.325  Sum_probs=34.5

Q ss_pred             ccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       151 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ..||+|.|.| .|-||+.+++.|...|++|++++|+..+
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   44 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            4789999999 7889999999999999999999987654

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.72  E-value=0.015  Score=46.93  Aligned_cols=37  Identities=24%  Similarity=0.189  Sum_probs=33.3

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      ...++|.|||.|..|..+|..|...|.+|++++++..
T Consensus         2 ~~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           2 PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3567999999999999999999999999999998654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.011  Score=48.52  Aligned_cols=40  Identities=23%  Similarity=0.302  Sum_probs=36.1

Q ss_pred             ccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          149 ETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ++|.||++.|.|.++ ||+++|+.|...|++|+.++|+.++
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~   43 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHG   43 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            579999999999766 9999999999999999999997654

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.015  Score=46.92  Aligned_cols=75  Identities=28%  Similarity=0.397  Sum_probs=50.6

Q ss_pred             ccCCEEEEEe-cCchHHHHHHHhccCCC--EEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          151 LLGKTVFILG-FGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       151 l~g~~vgIiG-~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      ..+++|.|.| .|-||+.+++.|...|.  +|++++|++.+.......       +  +.....+....+++.+.+..+|
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~-------~--i~~~~~D~~~~~~~~~~~~~~d   82 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYK-------N--VNQEVVDFEKLDDYASAFQGHD   82 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGG-------G--CEEEECCGGGGGGGGGGGSSCS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccc-------e--eeeeeecccccccccccccccc
Confidence            5788999999 89999999999988775  899999876542221110       0  0000111113356777888999


Q ss_pred             EEEEecC
Q 024297          228 VVVCCLS  234 (269)
Q Consensus       228 vvv~~lp  234 (269)
                      +++.++.
T Consensus        83 ~vi~~~~   89 (232)
T d2bkaa1          83 VGFCCLG   89 (232)
T ss_dssp             EEEECCC
T ss_pred             ccccccc
Confidence            9988764

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.63  E-value=0.012  Score=44.62  Aligned_cols=37  Identities=22%  Similarity=0.313  Sum_probs=31.5

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWA  187 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~  187 (269)
                      -.++||+|||.|.+|..+|..+...|.  ++..+|+...
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~   42 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANES   42 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccc
Confidence            467899999999999999998886554  8999998654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=94.59  E-value=0.011  Score=48.86  Aligned_cols=39  Identities=23%  Similarity=0.421  Sum_probs=35.3

Q ss_pred             cccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ++.||++.|.|.++ ||+++|+.|...|++|++.+|+..+
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAAD   45 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTT
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            68999999999665 9999999999999999999998755

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=94.59  E-value=0.046  Score=42.64  Aligned_cols=94  Identities=18%  Similarity=0.177  Sum_probs=51.2

Q ss_pred             CCEEEEEe-cCchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          153 GKTVFILG-FGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       153 g~~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      .-+|||+| .|-+|+++.++|... .+++.+...........     ...+++-.   ...........++...++|+++
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~Dvvf   76 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQF-----GSVFPHLI---TQDLPNLVAVKDADFSNVDAVF   76 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCH-----HHHCGGGT---TSCCCCCBCGGGCCGGGCSEEE
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCcc-----cccccccc---ccccccchhhhhhhhcccceee
Confidence            34799999 799999999999986 56766654222111110     01111100   0000001223345578999999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      +++|..      ...+... .+.....+|..
T Consensus        77 ~alp~~------~s~~~~~-~l~~~~~~v~~  100 (183)
T d2cvoa1          77 CCLPHG------TTQEIIK-GLPQELKIVDL  100 (183)
T ss_dssp             ECCSSS------HHHHHHH-TSCSSCEEEEC
T ss_pred             eccccc------hHHHHHH-HHHhcCccccc
Confidence            999843      3344555 44444444443

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.55  E-value=0.016  Score=44.65  Aligned_cols=40  Identities=13%  Similarity=0.209  Sum_probs=34.0

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWAS  188 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~  188 (269)
                      ..+..+||+|||.|++|..+|..+...|.  ++..+|.+.+.
T Consensus        16 ~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~   57 (160)
T d1i0za1          16 ATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDK   57 (160)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHH
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccch
Confidence            44667899999999999999999997776  89999986543

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=94.53  E-value=0.012  Score=44.67  Aligned_cols=36  Identities=17%  Similarity=0.219  Sum_probs=31.1

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCC--CEEEEEcCCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWA  187 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~  187 (269)
                      ..+||+|||.|.+|..+|..|...|  -+|..+|+...
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~   41 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKD   41 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccc
Confidence            4679999999999999999988766  58999998654

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=94.53  E-value=0.014  Score=46.49  Aligned_cols=35  Identities=31%  Similarity=0.333  Sum_probs=32.0

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      +.++|.|||.|-.|-.+|..|...|.+|+++++..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            34689999999999999999999999999999854

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.49  E-value=0.0059  Score=50.64  Aligned_cols=39  Identities=26%  Similarity=0.237  Sum_probs=34.4

Q ss_pred             cccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .|.||++.|.| .+.||+++|+.|...|++|++.+|+.++
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~   41 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAER   41 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            37899999998 5789999999999999999999987543

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.47  E-value=0.01  Score=44.01  Aligned_cols=33  Identities=21%  Similarity=0.370  Sum_probs=26.9

Q ss_pred             CEEEEEec-CchHHHHHHHhccCCCEEE-EEcCCC
Q 024297          154 KTVFILGF-GNIGVELAKRLRPFGVKII-ATKRSW  186 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~-~~~~~~  186 (269)
                      .+|+|+|+ |+||+++++.+...|+++. .++++.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~   35 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG   35 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc
Confidence            47999996 9999999999999999865 445443

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.44  E-value=0.014  Score=48.19  Aligned_cols=39  Identities=23%  Similarity=0.433  Sum_probs=35.3

Q ss_pred             cccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      +|+||++.|.| .+.||+++|+.|...|++|++.+|+..+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~   42 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKE   42 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            68999999999 6779999999999999999999987643

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.43  E-value=0.015  Score=47.75  Aligned_cols=39  Identities=21%  Similarity=0.440  Sum_probs=34.4

Q ss_pred             ccccCCEEEEEecC---chHHHHHHHhccCCCEEEEEcCCCC
Q 024297          149 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       149 ~~l~g~~vgIiG~G---~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      .+|.||++.|.|.+   .||+++|+.|...|++|++.+++..
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            46899999999975   5999999999999999999887643

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.08  Score=44.54  Aligned_cols=120  Identities=9%  Similarity=0.093  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccCCC-----------EEEEEcC
Q 024297          116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-----------KIIATKR  184 (269)
Q Consensus       116 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-----------~V~~~~~  184 (269)
                      +|=-+++.+++.+|-.                ++.|.+.+|.|.|.|.-|-.+|+.+...+.           +|+.+|+
T Consensus         4 Ta~V~lAglinAlki~----------------gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~   67 (294)
T d1pj3a1           4 TAAVALAGLLAAQKVI----------------SKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDK   67 (294)
T ss_dssp             HHHHHHHHHHHHHHHH----------------CCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEET
T ss_pred             HHHHHHHHHHHHHHHh----------------CCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeC
Confidence            4557788888888753                678999999999999999999998775433           4999997


Q ss_pred             CCCCccccccccchhhhccccccccccccC---CCCCHHHHHh--hCCEEEEecCCCccccCcCCHHHHhhh---CCCCc
Q 024297          185 SWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--KADVVVCCLSLNKQTVKLCSSSLSSKS---MFFAT  256 (269)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~aDvvv~~lp~t~~t~~li~~~~l~~~---mk~ga  256 (269)
                      ..--.....+....+       ...+....   ...+|.++++  +.|+++-+..    .-++++++.++ .   |.+..
T Consensus        68 ~Glv~~~r~~~~~~~-------k~~~a~~~~~~~~~~L~e~i~~~kptvliG~S~----~~g~ft~evi~-~Ma~~~~~P  135 (294)
T d1pj3a1          68 YGLLVKGRKAKIDSY-------QEPFTHSAPESIPDTFEDAVNILKPSTIIGVAG----AGRLFTPDVIR-AMASINERP  135 (294)
T ss_dssp             TEECBTTCSSCCCTT-------TGGGCBCCCSSCCSSHHHHHHHHCCSEEEECCC----SSCCSCHHHHH-HHHHHCSSC
T ss_pred             CCCccCCCCcccHHH-------HHHhhccccccchhHHHHHHHhcCCceEEEecC----CCCcCCHHHHH-HHHhcCCCc
Confidence            542110000000000       01111111   2247899887  8888877741    23788998875 4   45788


Q ss_pred             EEEEccC
Q 024297          257 YVVFMFQ  263 (269)
Q Consensus       257 ~lIN~~R  263 (269)
                      ++.=.|.
T Consensus       136 IIFaLSN  142 (294)
T d1pj3a1         136 VIFALSN  142 (294)
T ss_dssp             EEEECCS
T ss_pred             EEEEccC
Confidence            8776654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.35  E-value=0.021  Score=42.27  Aligned_cols=36  Identities=17%  Similarity=0.250  Sum_probs=32.8

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      .+++|.|||.|-+|-++|..|...|.+|+.+++...
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence            357999999999999999999999999999998654

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=94.34  E-value=0.014  Score=47.88  Aligned_cols=39  Identities=21%  Similarity=0.342  Sum_probs=34.0

Q ss_pred             cccCCEEEEEec-Cc--hHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILGF-GN--IGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~--iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      -|.||++.|.|. |+  ||+++|+.|...|++|+..+++..+
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~   44 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLR   44 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHH
Confidence            389999999995 54  9999999999999999999876543

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=94.32  E-value=0.015  Score=43.70  Aligned_cols=35  Identities=23%  Similarity=0.247  Sum_probs=29.9

Q ss_pred             CEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  188 (269)
                      +||+|||.|.+|..+|..+...+. ++..+|...+.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~   37 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGV   37 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecccc
Confidence            599999999999999998876654 89999987654

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=94.27  E-value=0.016  Score=47.69  Aligned_cols=46  Identities=15%  Similarity=0.121  Sum_probs=39.2

Q ss_pred             CCHHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccCC
Q 024297          217 EDIFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQG  264 (269)
Q Consensus       217 ~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~RG  264 (269)
                      .+..|+++++|+|++++|..+.+..++ ++... .+++|+++++++-.
T Consensus       133 ~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~-~l~~g~Iiid~STi  178 (242)
T d2b0ja2         133 SDDREAVEGADIVITWLPKGNKQPDII-KKFAD-AIPEGAIVTHACTI  178 (242)
T ss_dssp             SCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGG-GSCTTCEEEECSSS
T ss_pred             CCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHh-hCCCCcEEEecCCC
Confidence            789999999999999999766677777 44777 99999999998753

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=94.25  E-value=0.014  Score=48.01  Aligned_cols=35  Identities=29%  Similarity=0.255  Sum_probs=32.0

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      .-|+|.|||.|..|-..|..|...|.+|++++++.
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            44799999999999999999999999999999754

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=94.24  E-value=0.0093  Score=50.85  Aligned_cols=82  Identities=20%  Similarity=0.143  Sum_probs=49.6

Q ss_pred             ccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccc-cccccCCCCCHHHHHhhCCE
Q 024297          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDD-LVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       151 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ell~~aDv  228 (269)
                      -.||+|.|.| .|-||+.+++.|...|++|++..|+..+... .....+. ...+.... .........++++++..+|+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~-~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   86 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLAN-LQKRWDA-KYPGRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHHHHHH-HSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHH-HHHhhhc-cccccccEEEeccccchhhhhhhcccchh
Confidence            4599999999 5669999999999999999998876433110 0000000 00000000 11112234567788899998


Q ss_pred             EEEecC
Q 024297          229 VVCCLS  234 (269)
Q Consensus       229 vv~~lp  234 (269)
                      |+.+.-
T Consensus        87 v~~~a~   92 (342)
T d1y1pa1          87 VAHIAS   92 (342)
T ss_dssp             EEECCC
T ss_pred             hhhhcc
Confidence            876654

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.23  E-value=0.027  Score=43.30  Aligned_cols=38  Identities=16%  Similarity=0.278  Sum_probs=32.0

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCC
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWA  187 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~  187 (269)
                      .+...||+|||.|.+|..+|..+...|.  ++..+|.+..
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~   55 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTD   55 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHH
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCch
Confidence            3556799999999999999999887665  8999998654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=94.22  E-value=0.0043  Score=51.04  Aligned_cols=38  Identities=32%  Similarity=0.425  Sum_probs=33.6

Q ss_pred             cccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       150 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      +|.||++.|.| .+.||+++|+.|...|++|+.++|+.+
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~   39 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSEN   39 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            47899999999 456999999999999999999998754

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.21  E-value=0.0056  Score=50.18  Aligned_cols=99  Identities=17%  Similarity=0.227  Sum_probs=59.8

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhcc-cccc-----cc---------ccc
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKN-GIID-----DL---------VDE  212 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~---------~~~  212 (269)
                      ..|++++|.|+|.|.+|..+|+.|...|. +++.+|...-. ......+.-|...+ |...     +.         ...
T Consensus        26 ~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve-~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~  104 (247)
T d1jw9b_          26 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVS-LSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITP  104 (247)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCC-GGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEE
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccc-hhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhh
Confidence            45999999999999999999999999999 79998853222 11111111011000 0000     00         000


Q ss_pred             cC---CCCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297          213 KG---CHEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS  249 (269)
Q Consensus       213 ~~---~~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~  249 (269)
                      ..   ......+.+...|+++.+.+ +.+++.++++...+
T Consensus       105 ~~~~~~~~~~~~~~~~~divid~~d-~~~~~~~in~~~~~  143 (247)
T d1jw9b_         105 VNALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFA  143 (247)
T ss_dssp             ECSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHH
T ss_pred             hhhhhhhccccccccccceeeeccc-hhhhhhhHHHHHHH
Confidence            11   12345677888999888876 45677777775544

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=94.16  E-value=0.016  Score=48.32  Aligned_cols=40  Identities=23%  Similarity=0.419  Sum_probs=36.5

Q ss_pred             ccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       149 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .+|+||++.|.| .|.||+++|+.|...|++|++.+|+..+
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~   61 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDV   61 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence            589999999999 7899999999999999999999987543

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.14  E-value=0.033  Score=44.74  Aligned_cols=39  Identities=28%  Similarity=0.292  Sum_probs=35.3

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      ..-.+++|.|||.|..|-..|..|+..|++|+.++++..
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            456889999999999999999999999999999997654

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.12  E-value=0.0036  Score=49.33  Aligned_cols=95  Identities=15%  Similarity=0.094  Sum_probs=59.8

Q ss_pred             cCCEEEEEe-cCchHHHHHHHhccCCCE-EEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh----
Q 024297          152 LGKTVFILG-FGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK----  225 (269)
Q Consensus       152 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~----  225 (269)
                      .+++|.|.| .|.+|+.++|.++.+|++ |++++.+.++....        ....+.+..++.  ..+++.+.+++    
T Consensus        30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l--------~~~~gad~vi~~--~~~~~~~~~~~~~~~   99 (187)
T d1vj1a2          30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFL--------TSELGFDAAVNY--KTGNVAEQLREACPG   99 (187)
T ss_dssp             SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHH--------HHHSCCSEEEET--TSSCHHHHHHHHCTT
T ss_pred             CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhh--------hhcccceEEeec--cchhHHHHHHHHhcc
Confidence            347899999 599999999999999995 55555443321100        001111111111  33567777776    


Q ss_pred             -CCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          226 -ADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       226 -aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                       .|+|+-++-.  +   . -...++ .++++..++.+|.
T Consensus       100 GvDvv~D~vGg--~---~-~~~~~~-~l~~~G~iv~~G~  131 (187)
T d1vj1a2         100 GVDVYFDNVGG--D---I-SNTVIS-QMNENSHIILCGQ  131 (187)
T ss_dssp             CEEEEEESSCH--H---H-HHHHHT-TEEEEEEEEEC--
T ss_pred             CceEEEecCCc--h---h-HHHHhh-hccccccEEEecc
Confidence             8999988741  1   1 244778 8999999998875

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.06  E-value=0.019  Score=47.44  Aligned_cols=38  Identities=32%  Similarity=0.418  Sum_probs=34.1

Q ss_pred             cccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCCCC
Q 024297          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       150 ~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      .|.||++.|.|.+ .||+++|+.|...|++|++++|+.+
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNRE   40 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5899999999964 5999999999999999999998754

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.019  Score=46.91  Aligned_cols=39  Identities=28%  Similarity=0.473  Sum_probs=34.6

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .|.||++.|.|. +.||+++|+.|...|++|++++|+.++
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~   43 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQAD   43 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence            589999999994 569999999999999999999987543

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.05  E-value=0.014  Score=44.16  Aligned_cols=89  Identities=13%  Similarity=0.071  Sum_probs=50.2

Q ss_pred             CEEEEEec-CchHHHHHHHhc--cC-CCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEE
Q 024297          154 KTVFILGF-GNIGVELAKRLR--PF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~--~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvv  229 (269)
                      .+|||+|. |-+|+++.+.|.  .+ ..++..+..+........     +..+     +..    ....-.+...++|++
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~-----~~~~-----~~~----~~~~~~~~~~~~d~v   68 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG-----FAES-----SLR----VGDVDSFDFSSVGLA   68 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE-----ETTE-----EEE----CEEGGGCCGGGCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCccee-----eccc-----cch----hccchhhhhccceEE
Confidence            57999995 999999999995  33 346665543222211100     0000     000    001112335789999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +.++|...      ..+...+..+.|..+|+.+
T Consensus        69 f~a~p~~~------s~~~~~~~~~~g~~VID~S   95 (144)
T d2hjsa1          69 FFAAAAEV------SRAHAERARAAGCSVIDLS   95 (144)
T ss_dssp             EECSCHHH------HHHHHHHHHHTTCEEEETT
T ss_pred             EecCCcch------hhhhccccccCCceEEeec
Confidence            99988322      2333332456788888876

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.02  E-value=0.022  Score=42.77  Aligned_cols=62  Identities=15%  Similarity=0.165  Sum_probs=47.9

Q ss_pred             cCCEEEEEec----CchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCC
Q 024297          152 LGKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (269)
Q Consensus       152 ~g~~vgIiG~----G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (269)
                      .-|+|+|||.    ++.|..+++.|+.+|++|+.+++....-                  ....   .+.++.++-..-|
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i------------------~G~~---~~~sl~dlp~~iD   76 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV------------------LGRK---CYPSVLDIPDKIE   76 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE------------------TTEE---CBSSGGGCSSCCS
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc------------------CCCc---ccccccccCccce
Confidence            4579999995    5799999999999999999999764320                  1111   3467777777889


Q ss_pred             EEEEecC
Q 024297          228 VVVCCLS  234 (269)
Q Consensus       228 vvv~~lp  234 (269)
                      ++++++|
T Consensus        77 ~v~i~vp   83 (139)
T d2d59a1          77 VVDLFVK   83 (139)
T ss_dssp             EEEECSC
T ss_pred             EEEEEeC
Confidence            9999988

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=94.00  E-value=0.02  Score=47.24  Aligned_cols=39  Identities=28%  Similarity=0.371  Sum_probs=34.8

Q ss_pred             cccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      +|.||++.|.|.+ .||+++|+.|...|++|+.++|+.++
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~   41 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEE   41 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            5899999999965 59999999999999999999987643

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=93.99  E-value=0.02  Score=46.66  Aligned_cols=39  Identities=26%  Similarity=0.354  Sum_probs=34.8

Q ss_pred             cccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .|.||++.|.|.++ ||+++|+.|...|++|++.+|+.++
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~   41 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERL   41 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            38999999999766 9999999999999999999987654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=93.98  E-value=0.069  Score=40.66  Aligned_cols=38  Identities=24%  Similarity=0.359  Sum_probs=33.3

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  188 (269)
                      -.|.+|.|+|.|.+|...++.++.+|. +|++.+++..+
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~r   65 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDK   65 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHH
Confidence            467899999999999999999998776 79999987765

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.95  E-value=0.012  Score=43.22  Aligned_cols=86  Identities=14%  Similarity=0.136  Sum_probs=47.4

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHH----HhhCCEE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF----ASKADVV  229 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDvv  229 (269)
                      |.+.|+|+|.+|+.+++.|++.+  |.+++.++........  .++.+       .   .+...+-+-+    +.+|+.+
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~~--i~vi~~d~~~~~~~~~--~~~~~-------i---~Gd~~~~~~L~~a~i~~A~~v   66 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGSE--VFVLAEDENVRKKVLR--SGANF-------V---HGDPTRVSDLEKANVRGARAV   66 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGGG--EEEEESCTTHHHHHHH--TTCEE-------E---ESCTTSHHHHHHTTCTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHcCCC--CEEEEcchHHHHHHHh--cCccc-------c---ccccCCHHHHHHhhhhcCcEE
Confidence            45789999999999999998665  5556655443211110  01100       1   1222232222    5689999


Q ss_pred             EEecCCCccccCcCCHHHHhhhCCCCc
Q 024297          230 VCCLSLNKQTVKLCSSSLSSKSMFFAT  256 (269)
Q Consensus       230 v~~lp~t~~t~~li~~~~l~~~mk~ga  256 (269)
                      +++.+....  .+.-....+ .+.|..
T Consensus        67 i~~~~~d~~--n~~~~~~~r-~~~~~~   90 (129)
T d2fy8a1          67 IVNLESDSE--TIHCILGIR-KIDESV   90 (129)
T ss_dssp             EECCSSHHH--HHHHHHHHH-HHCSSS
T ss_pred             EEeccchhh--hHHHHHHHH-HHCCCc
Confidence            998874433  333333444 555553

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.016  Score=47.93  Aligned_cols=40  Identities=38%  Similarity=0.567  Sum_probs=35.3

Q ss_pred             ccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          149 ETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ..|.||++.|.|.++ ||+++|+.|...|++|++.+|+.++
T Consensus        10 ~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~   50 (269)
T d1xu9a_          10 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKET   50 (269)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            349999999999665 9999999999999999999997543

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=93.89  E-value=0.019  Score=47.77  Aligned_cols=37  Identities=32%  Similarity=0.453  Sum_probs=33.5

Q ss_pred             ccccCCEEEEEecC---chHHHHHHHhccCCCEEEEEcCC
Q 024297          149 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS  185 (269)
Q Consensus       149 ~~l~g~~vgIiG~G---~iG~~~a~~l~~~G~~V~~~~~~  185 (269)
                      -+|.||++.|.|.+   .||+++|+.|...|++|++.+++
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            46999999999986   59999999999999999998764

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=93.87  E-value=0.02  Score=46.66  Aligned_cols=38  Identities=21%  Similarity=0.321  Sum_probs=33.8

Q ss_pred             cccCCEEEEEecCc---hHHHHHHHhccCCCEEEEEcCCCC
Q 024297          150 TLLGKTVFILGFGN---IGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       150 ~l~g~~vgIiG~G~---iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      -|.||++.|.|.++   ||+++|+.|...|++|++.+++..
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            38999999999764   999999999999999999998744

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.83  E-value=0.032  Score=41.25  Aligned_cols=72  Identities=13%  Similarity=0.193  Sum_probs=52.2

Q ss_pred             ccCCEEEEEec----CchHHHHHHHhccCC-CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhh
Q 024297          151 LLGKTVFILGF----GNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK  225 (269)
Q Consensus       151 l~g~~vgIiG~----G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  225 (269)
                      +.=++|+|||.    |+.|..+.+.|+..| .+|+.++++...-                  ....   .+.++.++-..
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i------------------~G~~---~y~sl~dlp~~   64 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV------------------QGVK---AYKSVKDIPDE   64 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE------------------TTEE---CBSSTTSCSSC
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc------------------CCeE---eecchhhcCCC
Confidence            45589999996    899999999999766 6999999765320                  1111   34566676678


Q ss_pred             CCEEEEecCCCccccCcCC
Q 024297          226 ADVVVCCLSLNKQTVKLCS  244 (269)
Q Consensus       226 aDvvv~~lp~t~~t~~li~  244 (269)
                      .|++++++| .+.+..++.
T Consensus        65 vDlvvi~vp-~~~~~~~~~   82 (129)
T d2csua1          65 IDLAIIVVP-KRFVKDTLI   82 (129)
T ss_dssp             CSEEEECSC-HHHHHHHHH
T ss_pred             CceEEEecC-hHHhHHHHH
Confidence            999999998 445555553

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.82  E-value=0.022  Score=46.76  Aligned_cols=39  Identities=21%  Similarity=0.437  Sum_probs=34.7

Q ss_pred             cccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      +|.||++.|.|.+ .||+++|+.|...|++|++++|+.++
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   41 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEE   41 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            5899999999964 59999999999999999999987544

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=93.79  E-value=0.032  Score=47.75  Aligned_cols=33  Identities=33%  Similarity=0.333  Sum_probs=28.6

Q ss_pred             CEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      |+|.|.| .|-||+.+++.|...|.+|++++|..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5677888 89999999999999999999999854

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=93.77  E-value=0.015  Score=48.00  Aligned_cols=39  Identities=18%  Similarity=0.200  Sum_probs=33.6

Q ss_pred             cccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      +|.||+|.|.|.+ .||+++|+.|...|++|++..|+.+.
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~   41 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVEN   41 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            4899999999966 59999999999999998888766543

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.68  E-value=0.022  Score=44.34  Aligned_cols=100  Identities=20%  Similarity=0.151  Sum_probs=54.2

Q ss_pred             CEEEEEe-cCchHHHHHHHhccC-CCEEEEEcCCCCCccccccccchhhhccccccccccc-cCCCCCHHHHHhhCCEEE
Q 024297          154 KTVFILG-FGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KGCHEDIFEFASKADVVV  230 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~~aDvvv  230 (269)
                      .+|+|+| .|-+|+++.++|... .++|............ .+. .....++-  ...... .....+.......+|+++
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~a-Gk~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~dvvf   77 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDA-GKL-ISDLHPQL--KGIVDLPLQPMSDVRDFSADVDVVF   77 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTT-TCB-HHHHCGGG--TTTCCCBEEEESCGGGTCTTCCEEE
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccc-ccc-cccccccc--ccccccccccchhhhhhhcccceee
Confidence            3799999 899999999999987 7787665321111000 000 00000000  000000 001234445567899999


Q ss_pred             EecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          231 CCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       231 ~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      +++|...      ..+...+..+.+..+|+.+-
T Consensus        78 ~alp~~~------s~~~~~~~~~~~~~vIDlSa  104 (179)
T d2g17a1          78 LATAHEV------SHDLAPQFLQAGCVVFDLSG  104 (179)
T ss_dssp             ECSCHHH------HHHHHHHHHHTTCEEEECSS
T ss_pred             ccccchh------HHHHhhhhhhcCceeecccc
Confidence            9998322      23333324567888888763

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.66  E-value=0.026  Score=46.54  Aligned_cols=39  Identities=23%  Similarity=0.388  Sum_probs=34.8

Q ss_pred             cccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      +|.||++.|.|.+ .||+++|+.|...|++|++.+|+.++
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   44 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKE   44 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            6899999999975 59999999999999999999987543

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=93.44  E-value=0.058  Score=44.40  Aligned_cols=78  Identities=13%  Similarity=-0.052  Sum_probs=52.6

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      ..|++|++||+-    ...+.++..|+++.++++++..-.                  .     .....++++++||+|+
T Consensus       120 ~~g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~gd------------------~-----p~~~~~~lLp~aD~vi  172 (251)
T d2h1qa1         120 VKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEEGD------------------Y-----PLPASEFILPECDYVY  172 (251)
T ss_dssp             TTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCTTC------------------E-----EGGGHHHHGGGCSEEE
T ss_pred             cCCCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCCCC------------------C-----CchHHHHhhhcCCEEE
Confidence            478999999875    455667788899999999764411                  0     1134678899999998


Q ss_pred             EecCCCccccCcCC---HHHHhhhCCCCcEEEEcc
Q 024297          231 CCLSLNKQTVKLCS---SSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       231 ~~lp~t~~t~~li~---~~~l~~~mk~ga~lIN~~  262 (269)
                      ++--      .++|   ...|+ +.|+.+.+|=+|
T Consensus       173 iTGs------TlvN~Tl~~LL~-~~~~a~~vvl~G  200 (251)
T d2h1qa1         173 ITCA------SVVDKTLPRLLE-LSRNARRITLVG  200 (251)
T ss_dssp             EETH------HHHHTCHHHHHH-HTTTSSEEEEES
T ss_pred             EEec------hhhcCCHHHHHH-hCCcCCEEEEEC
Confidence            8852      2332   22566 677776665544

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=93.42  E-value=0.11  Score=43.97  Aligned_cols=120  Identities=10%  Similarity=0.065  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccC----CC-------EEEEEcC
Q 024297          116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF----GV-------KIIATKR  184 (269)
Q Consensus       116 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~----G~-------~V~~~~~  184 (269)
                      +|=-+++.+++.+|-.                ++.|.+.+|.|.|.|.-|-.+|+.+...    |.       +|+.+|+
T Consensus         4 Ta~V~lAglinAlki~----------------gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~   67 (308)
T d1o0sa1           4 TASVIVAGLLTCTRVT----------------KKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDI   67 (308)
T ss_dssp             HHHHHHHHHHHHHHHH----------------CCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEET
T ss_pred             HHHHHHHHHHHHHHHh----------------CCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeC
Confidence            4556778888888753                6789999999999999999999887654    32       3999997


Q ss_pred             CCCCccccccccchhhhccccccccccccCCCCCHHHHHhhC--CEEEEecCCCccccCcCCHHHHhhhCC---CCcEEE
Q 024297          185 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA--DVVVCCLSLNKQTVKLCSSSLSSKSMF---FATYVV  259 (269)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--Dvvv~~lp~t~~t~~li~~~~l~~~mk---~ga~lI  259 (269)
                      ..--.....+. .++     . ...........+|.++++..  ++++-+.    ...++++++.++ .|.   +..++.
T Consensus        68 ~Glv~~~r~d~-~~~-----k-~~~a~~~~~~~~l~~~i~~~kptvliG~s----~~~g~ft~evv~-~Ma~~~~~PIIF  135 (308)
T d1o0sa1          68 DGLVTKNRKEM-NPR-----H-VQFAKDMPETTSILEVIRAARPGALIGAS----TVRGAFNEEVIR-AMAEINERPIIF  135 (308)
T ss_dssp             TEECBTTCSSC-CGG-----G-TTTCBSSCCCCCHHHHHHHHCCSEEEECS----SCTTCSCHHHHH-HHHHHCSSCEEE
T ss_pred             CCCccCCCccc-CHH-----H-HHHHHhcccCCcHHHHHhccccccEEecc----cccCCCCHHHHH-HHHhhCCCcEEE
Confidence            54321110000 000     0 11222222345788888754  6766653    234889999887 664   777776


Q ss_pred             EccC
Q 024297          260 FMFQ  263 (269)
Q Consensus       260 N~~R  263 (269)
                      =.|.
T Consensus       136 aLSN  139 (308)
T d1o0sa1         136 ALSN  139 (308)
T ss_dssp             ECCS
T ss_pred             EccC
Confidence            6554

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.30  E-value=0.032  Score=45.49  Aligned_cols=38  Identities=24%  Similarity=0.276  Sum_probs=33.9

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      |.||++.|.|. +.||+++|+.|...|++|+.++|+.++
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~   41 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGP   41 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            78999999996 559999999999999999999987543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.27  E-value=0.022  Score=47.03  Aligned_cols=40  Identities=28%  Similarity=0.329  Sum_probs=35.1

Q ss_pred             ccccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          149 ETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .+|+||++.|.|.++ ||+++|+.|...|++|+.++|+..+
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~   44 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYE   44 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            368999999999654 9999999999999999999987543

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=93.26  E-value=0.021  Score=44.29  Aligned_cols=71  Identities=15%  Similarity=0.157  Sum_probs=43.4

Q ss_pred             CCEEEEEecCchHHHHH---HHhc--cC-CCEEEEEcCCCCCccccccccchhhhccccccccccccC------CCCCHH
Q 024297          153 GKTVFILGFGNIGVELA---KRLR--PF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG------CHEDIF  220 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a---~~l~--~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~  220 (269)
                      +.||+|||.|++|...+   ..++  .+ +-+|..+|.+..+.......   .       ........      ...+.+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~---~-------~~~~~~~~~~~~i~~~td~~   71 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTI---A-------KKYVEEVGADLKFEKTMNLD   71 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHH---H-------HHHHHHTTCCCEEEEESCHH
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHH---H-------HHHHHhcCCCeEEEEeCChh
Confidence            46999999999997643   2333  33 45999999875432110000   0       00011111      236899


Q ss_pred             HHHhhCCEEEEec
Q 024297          221 EFASKADVVVCCL  233 (269)
Q Consensus       221 ell~~aDvvv~~l  233 (269)
                      +.++.||+|+++.
T Consensus        72 eaL~dad~Vv~~~   84 (171)
T d1obba1          72 DVIIDADFVINTA   84 (171)
T ss_dssp             HHHTTCSEEEECC
T ss_pred             hcccCCCeEeeec
Confidence            9999999999875

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=93.22  E-value=0.035  Score=45.37  Aligned_cols=39  Identities=28%  Similarity=0.254  Sum_probs=34.5

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+++..+
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~   41 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP   41 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence            489999999996 469999999999999999999987643

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.16  E-value=0.041  Score=46.53  Aligned_cols=36  Identities=19%  Similarity=0.296  Sum_probs=32.6

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      ..|+|.|||.|-.|..+|..|+..|.+|++++.+..
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            368999999999999999999999999999997543

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.15  E-value=0.025  Score=46.78  Aligned_cols=40  Identities=30%  Similarity=0.384  Sum_probs=35.8

Q ss_pred             cccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       148 ~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      ..+|.||++.|.| .+.||+++|+.|...|++|++++++..
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~   53 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANST   53 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            4579999999999 789999999999999999999887643

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=93.14  E-value=0.019  Score=38.72  Aligned_cols=38  Identities=16%  Similarity=0.309  Sum_probs=33.1

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      -.+.+|.|.|. |.+|....+.++.+|++|+++.+++++
T Consensus        30 ~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k   68 (77)
T d1o8ca2          30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST   68 (77)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred             cCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHH
Confidence            46778999886 999999999999999999999876644

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=93.13  E-value=0.029  Score=44.98  Aligned_cols=33  Identities=27%  Similarity=0.352  Sum_probs=30.5

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      .+|.|||.|..|...|..|...|++|++++++.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            379999999999999999999999999999764

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=93.06  E-value=0.022  Score=46.33  Aligned_cols=73  Identities=14%  Similarity=0.119  Sum_probs=41.3

Q ss_pred             ccCCEEEEEecCch----HHHHHHHhccC--CCEEEE-EcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH
Q 024297          151 LLGKTVFILGFGNI----GVELAKRLRPF--GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA  223 (269)
Q Consensus       151 l~g~~vgIiG~G~i----G~~~a~~l~~~--G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  223 (269)
                      -+--+|||||+|.+    ++.....++..  +++|.+ +|++.........       ..+     ......++++++++
T Consensus        14 ~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~-------~~~-----~~~~~~~~~~~~l~   81 (237)
T d2nvwa1          14 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIE-------QLQ-----LKHATGFDSLESFA   81 (237)
T ss_dssp             GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHH-------HTT-----CTTCEEESCHHHHH
T ss_pred             CCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHH-------hcc-----cccceeecchhhcc
Confidence            34468999999985    44444445443  678775 6665433111000       000     00011247899998


Q ss_pred             h--hCCEEEEecCC
Q 024297          224 S--KADVVVCCLSL  235 (269)
Q Consensus       224 ~--~aDvvv~~lp~  235 (269)
                      .  +-|+|+++.|.
T Consensus        82 ~~~~iD~V~i~tp~   95 (237)
T d2nvwa1          82 QYKDIDMIVVSVKV   95 (237)
T ss_dssp             HCTTCSEEEECSCH
T ss_pred             cccccceeeccCCC
Confidence            6  56789999873

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.01  E-value=0.078  Score=44.90  Aligned_cols=74  Identities=19%  Similarity=0.149  Sum_probs=47.6

Q ss_pred             cCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEE
Q 024297          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (269)
Q Consensus       152 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv  230 (269)
                      .+++|.|.| .|-||+.+++.|...|.+|+++|+...........       +.  .-..........+.++++.+|.|+
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~-------~~--~~~~~D~~~~~~~~~~~~~~d~Vi   84 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMF-------CD--EFHLVDLRVMENCLKVTEGVDHVF   84 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGT-------CS--EEEECCTTSHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcc-------cC--cEEEeechhHHHHHHHhhcCCeEe
Confidence            678899999 89999999999999999999998755442111100       00  000001112234566777899877


Q ss_pred             EecC
Q 024297          231 CCLS  234 (269)
Q Consensus       231 ~~lp  234 (269)
                      .+..
T Consensus        85 h~a~   88 (363)
T d2c5aa1          85 NLAA   88 (363)
T ss_dssp             ECCC
T ss_pred             eccc
Confidence            6653

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.87  E-value=0.049  Score=44.68  Aligned_cols=40  Identities=25%  Similarity=0.425  Sum_probs=35.7

Q ss_pred             cccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       148 ~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      ...++||++.|.| .+.||+++|+.|...|++|++++|+..
T Consensus         5 M~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~   45 (257)
T d1xg5a_           5 MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVG   45 (257)
T ss_dssp             CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3569999999999 567999999999999999999998754

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.83  E-value=0.039  Score=45.09  Aligned_cols=39  Identities=18%  Similarity=0.231  Sum_probs=34.6

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+|+.++
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~   42 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEE   42 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            489999999996 569999999999999999999987643

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=92.81  E-value=0.04  Score=45.41  Aligned_cols=39  Identities=28%  Similarity=0.360  Sum_probs=34.2

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+|+.++
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   42 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDH   42 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            489999999994 569999999999999999999986543

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=92.68  E-value=0.044  Score=44.82  Aligned_cols=39  Identities=21%  Similarity=0.250  Sum_probs=34.9

Q ss_pred             cccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .|.||++.|.| .+.||+++|+.|...|++|++.+++.+.
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~   41 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG   41 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            38899999999 6789999999999999999999987643

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.66  E-value=0.05  Score=43.97  Aligned_cols=35  Identities=26%  Similarity=0.420  Sum_probs=31.6

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      +.++|.|||.|--|...|..|...|.+|+++..+.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            45679999999999999999999999999998654

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=92.58  E-value=0.032  Score=45.82  Aligned_cols=37  Identities=30%  Similarity=0.376  Sum_probs=32.6

Q ss_pred             ccCCEEEEEecCc-hHHHHHHHhccCCCEEEEEcCCCC
Q 024297          151 LLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       151 l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      |.||++.|.|.++ ||+++|+.|...|++|++.+|+..
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~   39 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDA   39 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            6899998888655 999999999999999999998753

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.51  E-value=0.14  Score=39.91  Aligned_cols=34  Identities=32%  Similarity=0.377  Sum_probs=28.9

Q ss_pred             CEEEEEec-CchHHHHHHHhccCCC--EEEEEcCCCC
Q 024297          154 KTVFILGF-GNIGVELAKRLRPFGV--KIIATKRSWA  187 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~~  187 (269)
                      |+|.|+|. |-||+.+++.|...|.  +|+...|+..
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~   39 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKAL   39 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCch
Confidence            79999997 9999999999998887  6777776543

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.43  E-value=0.046  Score=45.99  Aligned_cols=40  Identities=23%  Similarity=0.394  Sum_probs=35.1

Q ss_pred             ccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       149 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ..|.||++.|.|. +.||+++|+.|...|++|++.+|+.++
T Consensus         8 g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~   48 (297)
T d1yxma1           8 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLER   48 (297)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            3499999999995 559999999999999999999987543

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=92.37  E-value=0.052  Score=41.90  Aligned_cols=76  Identities=14%  Similarity=0.100  Sum_probs=42.7

Q ss_pred             CCEEEEEecCchHHHH--HHHh---ccC-CCEEEEEcCCCCCccccccccchhhhcccccccccc--ccCCCCCHHHHHh
Q 024297          153 GKTVFILGFGNIGVEL--AKRL---RPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD--EKGCHEDIFEFAS  224 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~--a~~l---~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~  224 (269)
                      .-||.|||.|++|...  ...+   ..+ +-+|..+|...++..... .......     .....  ......+..+.++
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~d~~eal~   76 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIA-GACDVFI-----REKAPDIEFAATTDPEEAFT   76 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHH-HHHHHHH-----HHHCTTSEEEEESCHHHHHS
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHH-HHHHHHH-----HHhCCCcceEecCChhhccC
Confidence            3589999999987542  2333   233 348999998765421000 0000000     00000  0112468899999


Q ss_pred             hCCEEEEecC
Q 024297          225 KADVVVCCLS  234 (269)
Q Consensus       225 ~aDvvv~~lp  234 (269)
                      .||+|+++.-
T Consensus        77 ~AD~Vvitag   86 (167)
T d1u8xx1          77 DVDFVMAHIR   86 (167)
T ss_dssp             SCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            9999999964

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.31  E-value=0.037  Score=45.38  Aligned_cols=37  Identities=30%  Similarity=0.436  Sum_probs=32.0

Q ss_pred             ccccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCC
Q 024297          149 ETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRS  185 (269)
Q Consensus       149 ~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~  185 (269)
                      +.|.||++.|.|.+ .||+++|+.|...|++|++..++
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~   39 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS   39 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence            56999999999955 59999999999999999886544

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.24  E-value=0.04  Score=45.22  Aligned_cols=38  Identities=26%  Similarity=0.335  Sum_probs=34.2

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      |.||++.|.|. +.||+++|+.|...|++|++.+|+.++
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~   41 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEA   41 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            78999999996 779999999999999999999987543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=92.24  E-value=0.051  Score=44.62  Aligned_cols=38  Identities=29%  Similarity=0.342  Sum_probs=33.8

Q ss_pred             ccCCEEEEEecC-chHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          151 LLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       151 l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      |.||++.|.|.+ .||+++|+.|...|++|++.+|+.++
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   40 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEG   40 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            789999999965 59999999999999999999987543

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=92.24  E-value=0.04  Score=45.40  Aligned_cols=39  Identities=31%  Similarity=0.387  Sum_probs=35.0

Q ss_pred             ccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       149 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      ++|.||++.|.| .+.||+++|+.|...|++|++.+|+.+
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~   42 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE   42 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            579999999998 577999999999999999999998754

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.22  E-value=0.067  Score=43.07  Aligned_cols=37  Identities=14%  Similarity=0.171  Sum_probs=32.5

Q ss_pred             cCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       152 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .||+|.|.|. |.||+++|+.|...|++|..+++...+
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~   38 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE   38 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            4899999996 569999999999999999999876544

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.22  E-value=0.053  Score=45.32  Aligned_cols=33  Identities=24%  Similarity=0.414  Sum_probs=29.5

Q ss_pred             CEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      |+|.|.| .|-||+.+++.|...|.+|+++++..
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~   35 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFF   35 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            7899998 68899999999999999999998643

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.13  E-value=0.041  Score=44.84  Aligned_cols=38  Identities=29%  Similarity=0.309  Sum_probs=34.0

Q ss_pred             ccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       151 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      |.||++.|.| .+.||+++|+.|...|++|++.+|+.++
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~   42 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESK   42 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            8999998887 6789999999999999999999987543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=92.13  E-value=0.052  Score=44.99  Aligned_cols=38  Identities=29%  Similarity=0.407  Sum_probs=34.3

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      |.||++.|.|. +.||+++|+.|...|++|++++|+.++
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   41 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAER   41 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            78999999995 789999999999999999999987543

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.06  E-value=0.062  Score=37.94  Aligned_cols=39  Identities=21%  Similarity=0.304  Sum_probs=33.1

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      ..+..||+|+|||.|+.|..+|.-+...+.+|++..+..
T Consensus        27 ~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          27 PELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             GGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             hhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            467999999999999999999999998888866655543

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.02  E-value=0.053  Score=45.72  Aligned_cols=38  Identities=18%  Similarity=0.319  Sum_probs=33.7

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+++.+
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD   42 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            488999999995 45999999999999999999998654

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.98  E-value=0.077  Score=41.98  Aligned_cols=34  Identities=15%  Similarity=0.200  Sum_probs=29.7

Q ss_pred             CEEEEEecCchHHHHHHHhc--cCCCEEEEEcCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLR--PFGVKIIATKRSWA  187 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~--~~G~~V~~~~~~~~  187 (269)
                      .+|+|||.|..|...|+.|.  .+|++|++|++...
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            38999999999999999885  57999999998754

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=91.96  E-value=0.047  Score=44.77  Aligned_cols=39  Identities=26%  Similarity=0.373  Sum_probs=34.4

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+|+.++
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   47 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADA   47 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            489999999996 569999999999999999999987543

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=91.93  E-value=0.045  Score=46.30  Aligned_cols=80  Identities=14%  Similarity=0.071  Sum_probs=50.6

Q ss_pred             cCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCC-CCHHHHHhhCCEE
Q 024297          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH-EDIFEFASKADVV  229 (269)
Q Consensus       152 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ell~~aDvv  229 (269)
                      ..|||.|+| .|.||+.+++.|.+.|++|.+..|+..+.....     .....+ +.-...+.... +.++.++..+|++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~-----~~~~~~-v~~~~gD~~d~~~~~~~a~~~~~~~   75 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEE-----LQAIPN-VTLFQGPLLNNVPLMDTLFEGAHLA   75 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHH-----HHTSTT-EEEEESCCTTCHHHHHHHHTTCSEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhh-----hcccCC-CEEEEeeCCCcHHHHHHHhcCCceE
Confidence            368999999 699999999999999999999998765421100     000001 01011111111 2366788889988


Q ss_pred             EEecCCCc
Q 024297          230 VCCLSLNK  237 (269)
Q Consensus       230 v~~lp~t~  237 (269)
                      ....+...
T Consensus        76 ~~~~~~~~   83 (350)
T d1xgka_          76 FINTTSQA   83 (350)
T ss_dssp             EECCCSTT
T ss_pred             Eeeccccc
Confidence            88776443

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.93  E-value=0.078  Score=43.24  Aligned_cols=40  Identities=28%  Similarity=0.238  Sum_probs=35.0

Q ss_pred             ccccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       149 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ..|.||++.|.|. +.||+++|+.|...|++|+.++|+.++
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~   46 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKS   46 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence            4688999999996 579999999999999999999987543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.91  E-value=0.044  Score=44.89  Aligned_cols=38  Identities=29%  Similarity=0.360  Sum_probs=33.8

Q ss_pred             cccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       150 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+++.+
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~   41 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEA   41 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999995 46999999999999999999998754

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=91.86  E-value=0.073  Score=41.40  Aligned_cols=107  Identities=14%  Similarity=0.094  Sum_probs=63.8

Q ss_pred             ccccCCEEEEEecC--chHHHHHHHhccCCCEEEEEcCCCCCccccc-cccchhhhccccccccccccCCCCCHHHHHhh
Q 024297          149 ETLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVS-CQSSALAVKNGIIDDLVDEKGCHEDIFEFASK  225 (269)
Q Consensus       149 ~~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  225 (269)
                      +++.+.+|+++|=|  ++.+.++..+..||++|.++.+..-...... .....+...+|      .......++++.++.
T Consensus         1 k~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g------~~~~~~~d~~~a~~~   74 (183)
T d1duvg2           1 KAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNG------GNITLTEDVAKGVEG   74 (183)
T ss_dssp             CCGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTT------CEEEEESCHHHHHTT
T ss_pred             CCcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcC------CceEEEechhhcccc
Confidence            35789999999954  7999999999999999999986432211000 00000000000      001124689999999


Q ss_pred             CCEEEEecCCCc----c----------ccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          226 ADVVVCCLSLNK----Q----------TVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       226 aDvvv~~lp~t~----~----------t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +|+|....=...    +          ....++..... ..+++++|.-+.
T Consensus        75 aDvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~MH~L  124 (183)
T d1duvg2          75 ADFIYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQL-TGNPEVKFLHCL  124 (183)
T ss_dssp             CSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHT-TCCTTCEEEECS
T ss_pred             CCEEEEEehhhhhhhhhhhhhhhhhhcccccccHHHHh-cccCCeEEEccC
Confidence            999987643110    0          01233343444 678888887754

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.81  E-value=0.057  Score=40.46  Aligned_cols=35  Identities=14%  Similarity=-0.054  Sum_probs=29.2

Q ss_pred             CEEEEEecCchHHHHHHHhccCCC--EEEEEcCCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWAS  188 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~  188 (269)
                      .||+|||.|.+|..+|..+...|.  ++..+|.+.+.
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~   37 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDL   37 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccch
Confidence            489999999999999998886554  89999976543

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=91.76  E-value=0.025  Score=43.59  Aligned_cols=32  Identities=31%  Similarity=0.373  Sum_probs=25.0

Q ss_pred             CEEEEEec-CchHHHHHHHhcc-CCCEEEE-EcCC
Q 024297          154 KTVFILGF-GNIGVELAKRLRP-FGVKIIA-TKRS  185 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~-~G~~V~~-~~~~  185 (269)
                      -+|+|+|+ |+||+++++.+.. -++++.+ +++.
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~   39 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALERE   39 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecc
Confidence            47999995 9999999998875 5888654 4443

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=91.75  E-value=0.076  Score=44.66  Aligned_cols=34  Identities=24%  Similarity=0.220  Sum_probs=29.0

Q ss_pred             CEEEEEecCchHHHHHHHhccC--CCEEEEEcCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSWA  187 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~--G~~V~~~~~~~~  187 (269)
                      |+|+|||.|..|-.+|..|+..  +.+|++++++..
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            6899999999999999888654  469999998743

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=91.71  E-value=0.048  Score=42.29  Aligned_cols=32  Identities=28%  Similarity=0.486  Sum_probs=29.3

Q ss_pred             EEEEEecCchHHHHHHHhccCCC-EEEEEcCCC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~  186 (269)
                      +|.|||.|-.|...|..|...|. +|++++++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            68999999999999999999997 699999764

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=91.59  E-value=0.047  Score=44.62  Aligned_cols=37  Identities=32%  Similarity=0.424  Sum_probs=33.6

Q ss_pred             ccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       151 l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      |.||++.|.| .+.||+++|+.|...|++|++++|+.+
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   41 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSD   41 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            8999999999 566999999999999999999998754

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.59  E-value=0.092  Score=39.23  Aligned_cols=39  Identities=23%  Similarity=0.262  Sum_probs=33.4

Q ss_pred             ccccCCEEEEE--ecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          149 ETLLGKTVFIL--GFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       149 ~~l~g~~vgIi--G~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      +...++.+.|+  |.|-||-++|..|..+|++|+++.+...
T Consensus        35 ~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          35 KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             CSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             ccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            44567788777  8899999999999999999999998653

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=91.56  E-value=0.33  Score=40.63  Aligned_cols=120  Identities=13%  Similarity=0.115  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCccccccCCEEEEEecCchHHHHHHHhccC----CC-------EEEEEcC
Q 024297          116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF----GV-------KIIATKR  184 (269)
Q Consensus       116 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~----G~-------~V~~~~~  184 (269)
                      +|=-+++.+|+.+|-.                ++.|.+.++.|.|.|.-|-.+|+.+...    |+       +|+.+|+
T Consensus         4 TaaV~lAglinAlki~----------------gk~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~   67 (298)
T d1gq2a1           4 TASVAVAGLLAALRIT----------------KNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDS   67 (298)
T ss_dssp             HHHHHHHHHHHHHHHH----------------TSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEET
T ss_pred             HHHHHHHHHHHHHHHh----------------CCCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeC
Confidence            4556788888888753                6789999999999999999999988743    32       6899987


Q ss_pred             CCCCccccccccchhhhccccccccccccCCCCCHHHHHhh--CCEEEEecCCCccccCcCCHHHHhhh---CCCCcEEE
Q 024297          185 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVVCCLSLNKQTVKLCSSSLSSKS---MFFATYVV  259 (269)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDvvv~~lp~t~~t~~li~~~~l~~~---mk~ga~lI  259 (269)
                      ..--.....+.       +.--...........++.++.+.  .++++-...    .-++++++.++ .   |.+..++.
T Consensus        68 kGlv~~~R~~l-------~~~k~~~a~~~~~~~~l~~~i~~vkptvliG~s~----~~g~ft~evv~-~ma~~~~~PIIF  135 (298)
T d1gq2a1          68 KGLIVKGRASL-------TPEKEHFAHEHCEMKNLEDIVKDIKPTVLIGVAA----IGGAFTQQILQ-DMAAFNKRPIIF  135 (298)
T ss_dssp             TEECBTTCSSC-------CTTGGGGCBSCCCCCCHHHHHHHHCCSEEEECSC----CTTCSCHHHHH-HHHHHCSSCEEE
T ss_pred             CCcccCCCccc-------CHHHHHHHHHhhhhhhhHHHhhccChheeEeccc----ccCcCCHHHHH-HHHhhCCCCEEE
Confidence            54321110000       00001122222244578887774  667777642    23889998665 4   45777777


Q ss_pred             EccC
Q 024297          260 FMFQ  263 (269)
Q Consensus       260 N~~R  263 (269)
                      =.|.
T Consensus       136 aLSN  139 (298)
T d1gq2a1         136 ALSN  139 (298)
T ss_dssp             ECCS
T ss_pred             EccC
Confidence            6654

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=91.50  E-value=0.035  Score=43.09  Aligned_cols=30  Identities=27%  Similarity=0.479  Sum_probs=27.2

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~  184 (269)
                      +|||=|||+|||.+.+.+...+.+|.+.+.
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd   31 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVND   31 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEECC
Confidence            799999999999999999888889888875

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=91.48  E-value=0.07  Score=38.08  Aligned_cols=34  Identities=24%  Similarity=0.241  Sum_probs=28.7

Q ss_pred             CEEEEEecCchHHHHHHHhc---cCCCEEEEEcCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLR---PFGVKIIATKRSWA  187 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~---~~G~~V~~~~~~~~  187 (269)
                      +++.|||.|.+|-++|..+.   ..|.+|+.+.+...
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence            78999999999999997644   56999999987543

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.41  E-value=0.072  Score=43.46  Aligned_cols=38  Identities=24%  Similarity=0.328  Sum_probs=33.1

Q ss_pred             ccCCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       151 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      +.||++.|.|. +.||+++|+.|...|++|+..+|+.++
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   39 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEA   39 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            46899999996 559999999999999999999987543

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=91.23  E-value=0.045  Score=42.33  Aligned_cols=31  Identities=32%  Similarity=0.450  Sum_probs=27.6

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  185 (269)
                      +|||=|||+||+.+.|.+..-+.+|.+++..
T Consensus         2 kigINGfGRIGR~~~R~l~~~~i~iv~INd~   32 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILHSRGVEVALINDL   32 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             EEEEECCcHHHHHHHHHHhcCCCEEEEECCC
Confidence            7999999999999999888778998888753

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.22  E-value=0.028  Score=42.67  Aligned_cols=90  Identities=16%  Similarity=0.128  Sum_probs=50.2

Q ss_pred             CCEEEEEec-CchHHHHHHHhccCC---CEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCE
Q 024297          153 GKTVFILGF-GNIGVELAKRLRPFG---VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (269)
Q Consensus       153 g~~vgIiG~-G~iG~~~a~~l~~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDv  228 (269)
                      |-+|||+|. |-+|+++.++|....   .++.++..+.......     .+..++         .......++...+.|+
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~-----~~~~~~---------~~~~~~~~~~~~~~d~   66 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSL-----KFKDQD---------ITIEETTETAFEGVDI   66 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEE-----EETTEE---------EEEEECCTTTTTTCSE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccc-----cccCCc---------ccccccchhhhhhhhh
Confidence            458999996 999999999997664   3455554221110000     000000         0011122234568999


Q ss_pred             EEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          229 VVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       229 vv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +++++|... +     .+...+..++|..+|+.|
T Consensus        67 ~f~~~~~~~-s-----~~~~~~~~~~~~~VIDlS   94 (154)
T d2gz1a1          67 ALFSAGSST-S-----AKYAPYAVKAGVVVVDNT   94 (154)
T ss_dssp             EEECSCHHH-H-----HHHHHHHHHTTCEEEECS
T ss_pred             hhhccCccc-h-----hhHHhhhccccceehhcC
Confidence            999988332 2     222221556788888876

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.81  E-value=0.079  Score=42.17  Aligned_cols=36  Identities=14%  Similarity=0.273  Sum_probs=31.4

Q ss_pred             CCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          153 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       153 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      +|++.|.|. +.||+++|+.|...|++|++.+++.+.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            478888885 789999999999999999999987654

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.81  E-value=0.078  Score=38.74  Aligned_cols=65  Identities=11%  Similarity=0.102  Sum_probs=39.8

Q ss_pred             EEEEEecCchHHHHHHHhc-cCCCEEEE-EcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHh-hCCEEEE
Q 024297          155 TVFILGFGNIGVELAKRLR-PFGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-KADVVVC  231 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~-~~G~~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDvvv~  231 (269)
                      +|.|+|+|++|+++++.+. .-|+++++ +|..+...-...         +|     ..-+ ..+.++++.+ ..++.+.
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I---------~G-----i~V~-~~~~l~~~~~~~i~iai~   69 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPV---------RG-----GVIE-HVDLLPQRVPGRIEIALL   69 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEE---------TT-----EEEE-EGGGHHHHSTTTCCEEEE
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEE---------CC-----EEEe-cHHHHHHHHhhcccEEEE
Confidence            7999999999999999765 45888554 554443321111         11     1001 2356666665 4577777


Q ss_pred             ecC
Q 024297          232 CLS  234 (269)
Q Consensus       232 ~lp  234 (269)
                      ++|
T Consensus        70 ~i~   72 (126)
T d2dt5a2          70 TVP   72 (126)
T ss_dssp             CSC
T ss_pred             eCC
Confidence            777

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=90.74  E-value=0.061  Score=41.42  Aligned_cols=36  Identities=17%  Similarity=0.093  Sum_probs=32.3

Q ss_pred             ccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      -+++.|.|||-|..|...|..+..+|++|+++++..
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            457789999999999999999999999999998643

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=90.72  E-value=0.12  Score=43.46  Aligned_cols=33  Identities=24%  Similarity=0.303  Sum_probs=29.1

Q ss_pred             CEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      ++|.|+| .|-||+.+++.|...|.+|+++|+..
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~   34 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLC   34 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            4688888 79999999999999999999998643

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=90.62  E-value=0.062  Score=40.68  Aligned_cols=32  Identities=34%  Similarity=0.326  Sum_probs=27.4

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEc
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATK  183 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~  183 (269)
                      ++++|.|||.|.+|-++|..|+.+|.+|.++.
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~   33 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRL   33 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEE
Confidence            46799999999999999999999998755544

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.57  E-value=0.088  Score=39.51  Aligned_cols=33  Identities=24%  Similarity=0.288  Sum_probs=28.6

Q ss_pred             CEEEEEec-CchHHHHHHHhccCCC--EEEEEcCCC
Q 024297          154 KTVFILGF-GNIGVELAKRLRPFGV--KIIATKRSW  186 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~  186 (269)
                      .||+|||. |.+|+.+|..+...|.  ++..+|+..
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            47999995 9999999999998774  899999764

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.48  E-value=0.11  Score=41.61  Aligned_cols=34  Identities=26%  Similarity=0.309  Sum_probs=30.7

Q ss_pred             EEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~  188 (269)
                      +|.|||.|-.|..+|..|+..|. +|.+++++...
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   37 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            79999999999999999999996 99999986544

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.36  E-value=0.082  Score=40.69  Aligned_cols=31  Identities=26%  Similarity=0.278  Sum_probs=29.3

Q ss_pred             EEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       156 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      |.|||.|-.|..+|..|...|.+|++++++.
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            7899999999999999999999999999864

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=90.35  E-value=0.15  Score=38.97  Aligned_cols=40  Identities=18%  Similarity=0.240  Sum_probs=35.0

Q ss_pred             ccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       149 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ....+.+|.|.| .|.+|...+|.++.+|++|++..++.++
T Consensus        20 ~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k   60 (167)
T d1tt7a2          20 LSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREA   60 (167)
T ss_dssp             CCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSST
T ss_pred             CCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHH
Confidence            445677899999 5999999999999999999999987765

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.33  E-value=0.3  Score=38.92  Aligned_cols=65  Identities=18%  Similarity=0.132  Sum_probs=47.7

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhcc--------------------CCC-EEEEEcCCCCCccccccccchhhhccccc
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRP--------------------FGV-KIIATKRSWASHSQVSCQSSALAVKNGII  206 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~--------------------~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (269)
                      ...+.|++|.|||-|+++-=+|+.|..                    .|. +|..+.|.....                 
T Consensus        34 ~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~-----------------   96 (225)
T d1cjca1          34 APDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQ-----------------   96 (225)
T ss_dssp             CCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGG-----------------
T ss_pred             CccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHh-----------------
Confidence            356789999999999999999998876                    576 699988765331                 


Q ss_pred             cccccccCCCCCHHHHHhhCCEEEEecC
Q 024297          207 DDLVDEKGCHEDIFEFASKADVVVCCLS  234 (269)
Q Consensus       207 ~~~~~~~~~~~~l~ell~~aDvvv~~lp  234 (269)
                           ...+..++.++....++-+..-|
T Consensus        97 -----~~ft~~Elre~~~~~~~~~~~~~  119 (225)
T d1cjca1          97 -----VAFTIKELREMIQLPGTRPMLDP  119 (225)
T ss_dssp             -----CCCCHHHHHHHHTCTTEEEECCG
T ss_pred             -----CCCCchhhhcccccCCCcceech
Confidence                 11134567788888887665533

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=90.32  E-value=0.24  Score=35.86  Aligned_cols=40  Identities=25%  Similarity=0.217  Sum_probs=35.5

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      +.-.+||+|+|+|.|..+-..|..|..+.-+|+.+.|...
T Consensus        22 ~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          22 GFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             GGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             hHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            3446899999999999999999999999999999987543

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=90.27  E-value=0.11  Score=40.01  Aligned_cols=31  Identities=26%  Similarity=0.384  Sum_probs=26.0

Q ss_pred             EEEEEecCchHHHHHHHhcc---CCCEEEEEcCC
Q 024297          155 TVFILGFGNIGVELAKRLRP---FGVKIIATKRS  185 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~---~G~~V~~~~~~  185 (269)
                      +|||=|||+||+.+.+.+..   .+.+|.+++..
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~   35 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDL   35 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECS
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEeccC
Confidence            79999999999999998763   45788888753

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=90.03  E-value=0.15  Score=40.93  Aligned_cols=38  Identities=16%  Similarity=0.226  Sum_probs=31.8

Q ss_pred             ccccCCEEEEEe-----------------cCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          149 ETLLGKTVFILG-----------------FGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       149 ~~l~g~~vgIiG-----------------~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      .+|.|++|.|-+                 -|.+|.++|+.+..+|++|+++.-..
T Consensus         2 ~dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~   56 (223)
T d1u7za_           2 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPV   56 (223)
T ss_dssp             CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             cccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhccc
Confidence            357788887766                 58999999999999999999987543

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=89.99  E-value=0.11  Score=40.31  Aligned_cols=31  Identities=23%  Similarity=0.403  Sum_probs=25.1

Q ss_pred             EEEEEecCchHHHHHHHhcc---CCCEEEEEcCC
Q 024297          155 TVFILGFGNIGVELAKRLRP---FGVKIIATKRS  185 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~---~G~~V~~~~~~  185 (269)
                      +|||=|||+||+.+.|.+..   ...+|.+++..
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~   35 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDT   35 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECT
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCC
Confidence            79999999999999997663   34788887753

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.90  E-value=0.065  Score=43.75  Aligned_cols=32  Identities=28%  Similarity=0.399  Sum_probs=30.2

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      +|.|||.|..|..+|..|+..|.+|+++++.+
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            58999999999999999999999999999865

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.79  E-value=0.12  Score=42.62  Aligned_cols=35  Identities=26%  Similarity=0.315  Sum_probs=30.8

Q ss_pred             CEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      |+|.|.| .|-||+.+++.|...|++|++++|....
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~   36 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSS   36 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCc
Confidence            6889998 6889999999999999999999986543

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=89.56  E-value=0.35  Score=40.14  Aligned_cols=34  Identities=29%  Similarity=0.313  Sum_probs=28.4

Q ss_pred             CEEEEEe-cCchHHHHHHHhccCC-CEEEEEcCCCC
Q 024297          154 KTVFILG-FGNIGVELAKRLRPFG-VKIIATKRSWA  187 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~G-~~V~~~~~~~~  187 (269)
                      ++|.|.| .|-||+.+++.|...| .+|+++|+...
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~   36 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD   36 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCG
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCc
Confidence            3688888 6889999999999888 59999987543

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.46  E-value=0.22  Score=36.89  Aligned_cols=33  Identities=30%  Similarity=0.392  Sum_probs=28.3

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      .||.|||.|.+|-++|..|+. +.+|+.+++...
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~   33 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPV   33 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEecccc
Confidence            479999999999999999975 679999987543

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=89.36  E-value=0.16  Score=39.22  Aligned_cols=98  Identities=9%  Similarity=0.070  Sum_probs=57.5

Q ss_pred             ccccCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHH-hhC
Q 024297          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-SKA  226 (269)
Q Consensus       149 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~a  226 (269)
                      ....+.+|.|.| .|.+|+...|.++.+|++|+++.++.++......         .+.+..+.. ......+.+. ...
T Consensus        28 ~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~---------lGad~vi~~-~~~~~~~~l~~~~~   97 (177)
T d1o89a2          28 VRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKS---------LGASRVLPR-DEFAESRPLEKQVW   97 (177)
T ss_dssp             CCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH---------HTEEEEEEG-GGSSSCCSSCCCCE
T ss_pred             CCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHh---------hcccccccc-ccHHHHHHHHhhcC
Confidence            334555787777 5999999999999999999999987665221110         000111110 0000111111 124


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEccC
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMFQ  263 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~R  263 (269)
                      |.++-++..  .   . -.+.++ .|+++..+|++|.
T Consensus        98 ~~vvD~Vgg--~---~-~~~~l~-~l~~~Griv~~G~  127 (177)
T d1o89a2          98 AGAIDTVGD--K---V-LAKVLA-QMNYGGCVAACGL  127 (177)
T ss_dssp             EEEEESSCH--H---H-HHHHHH-TEEEEEEEEECCC
T ss_pred             CeeEEEcch--H---H-HHHHHH-HhccccceEeecc
Confidence            777666531  1   1 245777 8999999999874

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=89.18  E-value=0.16  Score=39.05  Aligned_cols=32  Identities=28%  Similarity=0.364  Sum_probs=27.5

Q ss_pred             EEEEEecCchHHHHHHHhccC-CCEEEEEcCCC
Q 024297          155 TVFILGFGNIGVELAKRLRPF-GVKIIATKRSW  186 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~~~  186 (269)
                      +|||=|||+|||.+.|.+... .++|.+++...
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd~~   35 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDLL   35 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSS
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCC
Confidence            799999999999999988865 67988888643

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.12  E-value=0.39  Score=37.89  Aligned_cols=40  Identities=25%  Similarity=0.522  Sum_probs=32.7

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhc--------------------cCCC-EEEEEcCCCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLR--------------------PFGV-KIIATKRSWA  187 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~--------------------~~G~-~V~~~~~~~~  187 (269)
                      ...+.|++|.|||-|+++-=+|+.|.                    ..|. +|..+.|...
T Consensus        34 ~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          34 SPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             CCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            35678999999999999999998776                    5777 5888877543

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.08  E-value=0.13  Score=41.13  Aligned_cols=36  Identities=17%  Similarity=0.309  Sum_probs=31.1

Q ss_pred             CCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          153 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       153 g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      +.+|.|.| -|.||+++|+.|...|++|+.++++..+
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~   38 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND   38 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence            45677888 6789999999999999999999987654

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.04  E-value=0.074  Score=47.14  Aligned_cols=98  Identities=19%  Similarity=0.217  Sum_probs=59.6

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchhhhcc-cccc-----ccccc----------
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKN-GIID-----DLVDE----------  212 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~----------  212 (269)
                      -|.+++|.|||+|.+|.++++.|...|. ++..+|...-.. .....+.-|+..+ |...     +....          
T Consensus        34 ~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~-sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~  112 (426)
T d1yovb1          34 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDV-SNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPH  112 (426)
T ss_dssp             HHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCG-GGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEE
T ss_pred             HHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcch-hhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEee
Confidence            3788999999999999999999999998 799998633221 1110000000000 0000     00000          


Q ss_pred             cCC-CCCHHHHHhhCCEEEEecCCCccccCcCCHHHHh
Q 024297          213 KGC-HEDIFEFASKADVVVCCLSLNKQTVKLCSSSLSS  249 (269)
Q Consensus       213 ~~~-~~~l~ell~~aDvvv~~lp~t~~t~~li~~~~l~  249 (269)
                      ... .+..+++++++|+|+.++- +.++|..+|...+.
T Consensus       113 ~~~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~  149 (426)
T d1yovb1         113 FNKIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLIS  149 (426)
T ss_dssp             CSCGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHH
T ss_pred             eccccchHHHHHHhcchheeccC-cHHHHHHHHHHHHH
Confidence            001 1223578999999999887 56778888886655

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=88.97  E-value=0.16  Score=41.87  Aligned_cols=31  Identities=26%  Similarity=0.394  Sum_probs=27.2

Q ss_pred             EEEEEe-cCchHHHHHHHhccCCCEEEEEcCC
Q 024297          155 TVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (269)
Q Consensus       155 ~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~  185 (269)
                      ||.|.| .|-||+.+++.|...|++|+++|+.
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~   33 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNL   33 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            677777 7889999999999999999999853

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=88.89  E-value=0.048  Score=41.29  Aligned_cols=22  Identities=32%  Similarity=0.362  Sum_probs=19.1

Q ss_pred             CEEEEEec-CchHHHHHHHhccC
Q 024297          154 KTVFILGF-GNIGVELAKRLRPF  175 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~~  175 (269)
                      .+|.|+|. |.+|+.+|..|...
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~   27 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAG   27 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhc
Confidence            38999996 99999999988753

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=88.77  E-value=0.12  Score=41.55  Aligned_cols=32  Identities=19%  Similarity=0.144  Sum_probs=29.7

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      -|.|||.|-+|..+|..|...|.+|+++++..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            48999999999999999999999999999854

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=88.70  E-value=0.15  Score=39.42  Aligned_cols=32  Identities=25%  Similarity=0.407  Sum_probs=25.5

Q ss_pred             CEEEEEecCchHHHHHHHhcc----CCCEEEEEcCC
Q 024297          154 KTVFILGFGNIGVELAKRLRP----FGVKIIATKRS  185 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~----~G~~V~~~~~~  185 (269)
                      .+|||=|||+||+.+.|.+..    -..+|.+.+..
T Consensus         2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~   37 (173)
T d1obfo1           2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDL   37 (173)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECS
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCC
Confidence            379999999999999998753    35678887753

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=88.68  E-value=0.17  Score=40.54  Aligned_cols=35  Identities=26%  Similarity=0.292  Sum_probs=28.8

Q ss_pred             CEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      |.|.|.|. +.||+++|+.|...|++|++.+++..+
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~   37 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE   37 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH
Confidence            45667774 669999999999999999999986543

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.62  E-value=0.13  Score=38.75  Aligned_cols=75  Identities=16%  Similarity=0.114  Sum_probs=43.1

Q ss_pred             CEEEEEec-CchHHHHHHHhcc---CC----CEEEEEcCCCCCcc-cccccc-chhhhccccccccccccCCCCCHHHHH
Q 024297          154 KTVFILGF-GNIGVELAKRLRP---FG----VKIIATKRSWASHS-QVSCQS-SALAVKNGIIDDLVDEKGCHEDIFEFA  223 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~---~G----~~V~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ell  223 (269)
                      .+|.|||. |.+|+.+|..|..   ||    ..+..+|....... ...... .+..++      .........+..+.+
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~   77 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP------LLKDVIATDKEEIAF   77 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCT------TEEEEEEESCHHHHT
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccc------cccccccCccccccc
Confidence            38999995 9999999998763   33    25777775443211 000000 000000      000011235778999


Q ss_pred             hhCCEEEEecC
Q 024297          224 SKADVVVCCLS  234 (269)
Q Consensus       224 ~~aDvvv~~lp  234 (269)
                      +++|+|+++.-
T Consensus        78 ~~~dvVVitag   88 (154)
T d5mdha1          78 KDLDVAILVGS   88 (154)
T ss_dssp             TTCSEEEECCS
T ss_pred             CCceEEEEecc
Confidence            99999999864

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=88.59  E-value=0.15  Score=39.79  Aligned_cols=30  Identities=20%  Similarity=0.277  Sum_probs=28.3

Q ss_pred             EEEEecCchHHHHHHHhccCCCEEEEEcCC
Q 024297          156 VFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (269)
Q Consensus       156 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  185 (269)
                      |.|||.|..|...|..+..+|.+|..+++.
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999999864

>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Formyl-CoA transferase
species: Oxalobacter formigenes [TaxId: 847]

Probab=88.37  E-value=0.93  Score=39.04  Aligned_cols=113  Identities=13%  Similarity=0.032  Sum_probs=70.6

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCcccc-------ccccchhhhccccccccccccC---CCCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV-------SCQSSALAVKNGIIDDLVDEKG---CHED  218 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~---~~~~  218 (269)
                      +.|.|-+|.=++-.-.|-..+++|..+|++|+=+.+........       ...+.-|...|-+=....-.+.   ..+-
T Consensus         2 ~PL~GirVld~~~~~agp~~~~~LadlGAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~~~   81 (427)
T d2vjma1           2 KPLDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTMFNCNKRSIELDMKTPEGKEL   81 (427)
T ss_dssp             CTTTTCEEEECCCTTHHHHHHHHHHHTTCEEEEEECTTTCSGGGGSSCSSTTSCCHHHHTTCSSCEEEECCTTSHHHHHH
T ss_pred             CCCCCCEEEEcCChhHHHHHHHHHHHhCCeEEEECCCCCCCcccccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHHHH
Confidence            46899999988988888899999999999999998642211000       0000001111100000000011   1124


Q ss_pred             HHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          219 IFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       219 l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +.+|+++|||||-..+...--+-=++.+.++ ...|.-+...++
T Consensus        82 ~~~Lv~~aDv~i~n~~pg~~~rlGL~~~~l~-~~NP~LI~~sis  124 (427)
T d2vjma1          82 LEQMIKKADVMVENFGPGALDRMGFTWEYIQ-ELNPRVILASVK  124 (427)
T ss_dssp             HHHHHHHCSEEEECCSTTHHHHTTCCHHHHH-HHCTTCEEEEEE
T ss_pred             HHHHHHhCCeeeECCCcchHHHcCCCchhhh-hhCCccceeeee
Confidence            7899999999998876443334556899999 889998888773

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=88.30  E-value=0.14  Score=41.69  Aligned_cols=35  Identities=29%  Similarity=0.330  Sum_probs=28.3

Q ss_pred             CEE-EEEec-CchHHHHHHHhccCCCEEEEEcCCCCC
Q 024297          154 KTV-FILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (269)
Q Consensus       154 ~~v-gIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~  188 (269)
                      ||| .|.|. +.||+++|+.|...|++|++.+|+.++
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   37 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDAT   37 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            455 45575 459999999999999999999987543

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=88.15  E-value=0.22  Score=38.84  Aligned_cols=39  Identities=15%  Similarity=0.341  Sum_probs=33.8

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      ..+.||+|.|||.|..|-.+|..+...+.+++..-++..
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~   66 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH   66 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence            568999999999999999999999988888777766543

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=88.14  E-value=0.16  Score=42.44  Aligned_cols=36  Identities=22%  Similarity=0.279  Sum_probs=32.0

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      ....|.|||.|..|-.+|..|+..|.+|+++++...
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            455799999999999999999999999999997643

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.87  E-value=0.27  Score=41.13  Aligned_cols=34  Identities=24%  Similarity=0.282  Sum_probs=28.9

Q ss_pred             CEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      |+|.|.| .|-||+.+++.|...|.+|+++|+...
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~   36 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSN   36 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCC
Confidence            5677777 789999999999999999999986433

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.87  E-value=0.35  Score=34.27  Aligned_cols=34  Identities=24%  Similarity=0.298  Sum_probs=27.6

Q ss_pred             CCEEEEEecCchHHHHHHHhccC---CCEEEEEcCCC
Q 024297          153 GKTVFILGFGNIGVELAKRLRPF---GVKIIATKRSW  186 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l~~~---G~~V~~~~~~~  186 (269)
                      .+++.|||.|.+|-++|..+..+   |.+|+.+.+..
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            36899999999999999766554   56899998754

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.79  E-value=0.2  Score=41.52  Aligned_cols=32  Identities=22%  Similarity=0.381  Sum_probs=29.5

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      .|.|||.|-.|..+|+.|+..|.+|++++.+.
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            58899999999999999999999999999754

>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB
species: Escherichia coli [TaxId: 562]

Probab=87.78  E-value=0.58  Score=40.16  Aligned_cols=111  Identities=10%  Similarity=0.054  Sum_probs=72.2

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhcc-ccccccccccC---CCCCHHHHHh
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKN-GIIDDLVDEKG---CHEDIFEFAS  224 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~l~ell~  224 (269)
                      ..|.|-+|.=++-+--|-..+++|..+|++|+=+.+...... ......-+...| +. ....-.+.   ..+-+.+|++
T Consensus         7 gPL~GirVld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~-~r~~~~~~~~~n~~K-~si~ldl~~~~G~~~~~~Lv~   84 (402)
T d1xk7a1           7 GPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADT-IRVQPNYPQLSRRNL-HALSLNIFKDEGREAFLKLME   84 (402)
T ss_dssp             STTTTCEEEEECCSSHHHHHHHHHHHTTCEEEEEECSSSCCG-GGGSSSHHHHHTTTC-EEEEECTTSHHHHHHHHHHHT
T ss_pred             cCCCCCEEEEeCChhHHHHHHHHHHHhCCeEEEECCCCCCCc-cccCCchhHHhCCCC-eEEEEeCcCHHHHHHHHHHHh
Confidence            359999999999888899999999999999999986432211 001111111111 11 11111111   1234789999


Q ss_pred             hCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          225 KADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       225 ~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +||||+-..+...-.+-=++.+.++ ...|.-+.+.++
T Consensus        85 ~aDv~i~n~rpg~~~~lGl~~~~L~-~~nP~lI~~sis  121 (402)
T d1xk7a1          85 TTDIFIEASKGPAFARRGITDEVLW-QHNPKLVIAHLS  121 (402)
T ss_dssp             TCSEEEEECSSSHHHHTTCCHHHHH-HHCTTCEEEEEE
T ss_pred             hcCCceeeecccccccccccccchh-hccccccceeee
Confidence            9999998875443334456889999 999999888773

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.77  E-value=0.11  Score=40.76  Aligned_cols=34  Identities=15%  Similarity=-0.012  Sum_probs=29.4

Q ss_pred             CEEEEEecCchHHHHHHHhccCC-------CEEEEEcCCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFG-------VKIIATKRSWA  187 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G-------~~V~~~~~~~~  187 (269)
                      .+|+|||.|.-|-+.|..|...|       ++|++|++.+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            48999999999999999987766       68999998653

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=87.72  E-value=0.2  Score=37.33  Aligned_cols=32  Identities=13%  Similarity=0.292  Sum_probs=27.4

Q ss_pred             CEEEEEe-cCchHHHHHHHhccCCC--EEEEEcCC
Q 024297          154 KTVFILG-FGNIGVELAKRLRPFGV--KIIATKRS  185 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~G~--~V~~~~~~  185 (269)
                      .||+||| .|.+|+.+|..+...|.  ++..+|..
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            4899999 69999999999886655  89999964

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=87.66  E-value=0.38  Score=39.36  Aligned_cols=33  Identities=24%  Similarity=0.410  Sum_probs=29.3

Q ss_pred             CCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCC
Q 024297          153 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (269)
Q Consensus       153 g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~  185 (269)
                      -|+|.|.| .|-||+.+++.|...|..|++.+..
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~   35 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR   35 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCc
Confidence            47899999 7999999999999999999888754

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=87.60  E-value=0.17  Score=40.05  Aligned_cols=33  Identities=18%  Similarity=0.248  Sum_probs=30.0

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      -|.|||.|..|..+|..|...|++|+++++...
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            378999999999999999999999999997654

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=87.37  E-value=0.4  Score=38.44  Aligned_cols=31  Identities=32%  Similarity=0.587  Sum_probs=24.7

Q ss_pred             CEEEEEe-cCchHHHHHHHhccCCCEEEEEcCC
Q 024297          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~  185 (269)
                      ++|.|.| .|-||+.+++.|...|..| +.+++
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v-~~~~~   32 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLI-ALDVH   32 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEE-EECTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEE-EEECC
Confidence            4789999 5999999999999988655 44443

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.18  E-value=0.21  Score=38.26  Aligned_cols=30  Identities=23%  Similarity=0.327  Sum_probs=26.2

Q ss_pred             EEEEEecCchHHHHHHHhccC-CCEEEEEcC
Q 024297          155 TVFILGFGNIGVELAKRLRPF-GVKIIATKR  184 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~  184 (269)
                      +|||=|||+|||.+.+.+... ..+|.+++.
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd   32 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAIND   32 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECC
Confidence            799999999999999988854 678888874

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.13  E-value=0.17  Score=41.46  Aligned_cols=37  Identities=24%  Similarity=0.397  Sum_probs=32.0

Q ss_pred             cCCEEEEE--ecCchHHHHHHHhcc-CCCEEEEEcCCCCC
Q 024297          152 LGKTVFIL--GFGNIGVELAKRLRP-FGVKIIATKRSWAS  188 (269)
Q Consensus       152 ~g~~vgIi--G~G~iG~~~a~~l~~-~G~~V~~~~~~~~~  188 (269)
                      +||+|+||  |-+.||+++|+.|.. .|++|+.++|+.++
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~   40 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTR   40 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            58999988  788999999999876 59999999998654

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.11  E-value=0.26  Score=36.03  Aligned_cols=35  Identities=34%  Similarity=0.443  Sum_probs=29.3

Q ss_pred             CCEEEEEecCchHHHHHHHh----ccCCCEEEEEcCCCC
Q 024297          153 GKTVFILGFGNIGVELAKRL----RPFGVKIIATKRSWA  187 (269)
Q Consensus       153 g~~vgIiG~G~iG~~~a~~l----~~~G~~V~~~~~~~~  187 (269)
                      .+++.|||.|-+|-++|..|    +.+|.+|+.+.+...
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            57999999999999988766    468999999987543

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.94  E-value=0.18  Score=42.99  Aligned_cols=31  Identities=23%  Similarity=0.317  Sum_probs=28.3

Q ss_pred             CCEEEEEe-cCchHHHHHHHhccCCCEEEEEc
Q 024297          153 GKTVFILG-FGNIGVELAKRLRPFGVKIIATK  183 (269)
Q Consensus       153 g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~  183 (269)
                      |++|.|.| .|-||+.+++.|...|++|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            78999999 68899999999999999999997

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=86.92  E-value=0.15  Score=39.62  Aligned_cols=32  Identities=25%  Similarity=0.279  Sum_probs=29.0

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      -|.|||.|..|...|..+..+|.+|+++++..
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            37899999999999999999999999998643

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=86.86  E-value=0.23  Score=38.21  Aligned_cols=30  Identities=30%  Similarity=0.371  Sum_probs=25.7

Q ss_pred             EEEEEecCchHHHHHHHhccC-CCEEEEEcC
Q 024297          155 TVFILGFGNIGVELAKRLRPF-GVKIIATKR  184 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~  184 (269)
                      +|||=|||+|||.+.+.+... ..+|.+++.
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd   33 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAIND   33 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEecC
Confidence            799999999999999987754 578888865

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.70  E-value=0.087  Score=47.94  Aligned_cols=43  Identities=21%  Similarity=0.231  Sum_probs=37.1

Q ss_pred             CCCCccccccCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCC
Q 024297          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (269)
Q Consensus       143 w~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~  185 (269)
                      |+......|..++|.|+|+|.+|.++++.|.-.|. +++.+|..
T Consensus        15 wG~~gQ~~L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d   58 (529)
T d1yova1          15 WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGN   58 (529)
T ss_dssp             HHHHHHHHHHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCS
T ss_pred             hhHHHHHHHhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            55445567999999999999999999999999997 79999864

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.61  E-value=0.18  Score=41.15  Aligned_cols=31  Identities=26%  Similarity=0.353  Sum_probs=28.9

Q ss_pred             EEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       156 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      |.|||.|-.|...|..|+..|.+|++++++.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7899999999999999999999999998654

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.60  E-value=0.14  Score=39.39  Aligned_cols=35  Identities=14%  Similarity=0.017  Sum_probs=31.3

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      ..++|.|||.|..|...|..|..+|++|+++++..
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            45789999999999999999999999999998543

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=86.54  E-value=0.27  Score=37.88  Aligned_cols=31  Identities=26%  Similarity=0.380  Sum_probs=26.4

Q ss_pred             EEEEEecCchHHHHHHHhccC-CCEEEEEcCC
Q 024297          155 TVFILGFGNIGVELAKRLRPF-GVKIIATKRS  185 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~~  185 (269)
                      +|||=|||+||+.+.+.+... ..+|.+++..
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaINd~   34 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVNDL   34 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEcCC
Confidence            799999999999999988754 6788888753

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.46  E-value=0.21  Score=39.00  Aligned_cols=32  Identities=22%  Similarity=0.296  Sum_probs=29.1

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      -|.|||.|..|...|..+...|.+|..++...
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            37899999999999999999999999998643

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=86.31  E-value=0.24  Score=38.19  Aligned_cols=75  Identities=16%  Similarity=0.115  Sum_probs=44.3

Q ss_pred             CEEEEEec-CchHHHHHHHhcc---CCC----EEEEEcCCCCCcc-ccccc-cchhhhccccccccccccCCCCCHHHHH
Q 024297          154 KTVFILGF-GNIGVELAKRLRP---FGV----KIIATKRSWASHS-QVSCQ-SSALAVKNGIIDDLVDEKGCHEDIFEFA  223 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~~---~G~----~V~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ell  223 (269)
                      .+|.|+|. |.||+.++.+|..   ||.    .+..+|....... ..... ..+.++      ..........+..+.+
T Consensus        25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~------~~~~~~~~~~~~~~~~   98 (175)
T d7mdha1          25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLY------PLLREVSIGIDPYEVF   98 (175)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC------TTEEEEEEESCHHHHT
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccccc------ccccCccccccchhhc
Confidence            48999996 9999999998873   554    5666675443211 00000 000000      0011111246788999


Q ss_pred             hhCCEEEEecC
Q 024297          224 SKADVVVCCLS  234 (269)
Q Consensus       224 ~~aDvvv~~lp  234 (269)
                      +.+|+|++..-
T Consensus        99 ~~aDvVvi~ag  109 (175)
T d7mdha1          99 EDVDWALLIGA  109 (175)
T ss_dssp             TTCSEEEECCC
T ss_pred             cCCceEEEeec
Confidence            99999999964

>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Transcarbamylase-like protein
species: Bacteroides fragilis [TaxId: 817]

Probab=86.20  E-value=1.5  Score=32.90  Aligned_cols=86  Identities=9%  Similarity=0.020  Sum_probs=53.6

Q ss_pred             hHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccCCCCCHHHHHhhCCEEEEecCCC---cc--
Q 024297          164 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLN---KQ--  238 (269)
Q Consensus       164 iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDvvv~~lp~t---~~--  238 (269)
                      +.+.++..+..||++|.++.+..-....                ..........++.+.++.+|+|..-.--.   ++  
T Consensus        21 Va~S~i~~l~~~G~~v~~~~P~~~~p~~----------------~~~~~~~~~~d~~eav~~aDvI~td~w~s~~~~~~~   84 (161)
T d1js1x2          21 VPNSFAEWMNATDYEFVITHPEGYELDP----------------KFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYG   84 (161)
T ss_dssp             HHHHHHHHHHTSSSEEEEECCTTCCCCH----------------HHHTTCEEESCHHHHHTTCSEEEECCCCCCSTTCTT
T ss_pred             HHHHHHHHHHHcCCEEEEECCcccCCCH----------------HHhCCceEecCHHHHhCCCcceeeehhhhhcchhHH
Confidence            8899999999999999999875332110                11111112468999999999998642111   00  


Q ss_pred             ------ccCcCCHHHHhhhCCCCcEEEEcc---CCCCc
Q 024297          239 ------TVKLCSSSLSSKSMFFATYVVFMF---QGHGV  267 (269)
Q Consensus       239 ------t~~li~~~~l~~~mk~ga~lIN~~---RG~~v  267 (269)
                            ....+++ .+. .++++++|.-++   ||.=|
T Consensus        85 ~~~~~~~~~~~~~-~l~-~~~~dai~MHclPa~Rg~EI  120 (161)
T d1js1x2          85 QILSTDRNWTVGD-RQM-AVTNNAYFMHCLPVRRNMIV  120 (161)
T ss_dssp             CCCCCCTTSSBCH-HHH-TTSSSCEEECCSCCCBTTTB
T ss_pred             HHHHHhhhhhhhH-HHh-hcCCceEEcCCCccccchhc
Confidence                  1122344 445 567789988776   56533

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=86.18  E-value=0.24  Score=39.93  Aligned_cols=33  Identities=24%  Similarity=0.376  Sum_probs=30.0

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      -|.|||.|-+|..+|..|...|.+|+++++...
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~   37 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP   37 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            488999999999999999999999999998543

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=86.12  E-value=0.52  Score=33.98  Aligned_cols=39  Identities=31%  Similarity=0.309  Sum_probs=35.1

Q ss_pred             cccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       148 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      +...+||+|.|+|.|..+-..|..|..+.-+|+.+.|..
T Consensus        25 ~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~   63 (126)
T d1fl2a2          25 GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP   63 (126)
T ss_dssp             GGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSS
T ss_pred             hhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccc
Confidence            456789999999999999999999999999999998754

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=86.09  E-value=0.2  Score=40.92  Aligned_cols=32  Identities=28%  Similarity=0.408  Sum_probs=29.0

Q ss_pred             EEEEEecCchHHHHHHHhccCCC-EEEEEcCCC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~  186 (269)
                      +|.|||.|-+|-++|..|...|. +|++++++.
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            58999999999999999999997 699999864

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=86.01  E-value=0.28  Score=36.87  Aligned_cols=31  Identities=23%  Similarity=0.234  Sum_probs=28.5

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  185 (269)
                      -|.|||.|..|-..|..+..+|++|+.+++.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            3789999999999999999999999999864

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.61  E-value=0.18  Score=44.30  Aligned_cols=107  Identities=13%  Similarity=0.096  Sum_probs=61.3

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCC-EEEEEcCCCCCccccccccchh-------hhccccccc-cccccCCCCCHHHH
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSAL-------AVKNGIIDD-LVDEKGCHEDIFEF  222 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~l~el  222 (269)
                      .|.++.=||.|. |+.+.+.++.+|+ +|++++.++.....+..+...+       ....+...- ...........++.
T Consensus       216 pgd~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~  294 (406)
T d1u2za_         216 KGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL  294 (406)
T ss_dssp             TTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred             CCCEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccc
Confidence            678999999984 7777777788887 8999998754311110000000       000000000 00111122446788


Q ss_pred             HhhCCEEEEecC-CCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          223 ASKADVVVCCLS-LNKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       223 l~~aDvvv~~lp-~t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      +..+|+|.++.- ..++....+ .+.+. .||||+.||..
T Consensus       295 ~~~adVV~inn~~f~~~l~~~L-~ei~r-~LKPGGrIVs~  332 (406)
T d1u2za_         295 IPQCDVILVNNFLFDEDLNKKV-EKILQ-TAKVGCKIISL  332 (406)
T ss_dssp             GGGCSEEEECCTTCCHHHHHHH-HHHHT-TCCTTCEEEES
T ss_pred             cccceEEEEecccCchHHHHHH-HHHHH-hcCCCcEEEEe
Confidence            899999988632 233434444 35788 99999999864

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=85.52  E-value=0.32  Score=39.34  Aligned_cols=35  Identities=26%  Similarity=0.505  Sum_probs=29.6

Q ss_pred             CCEEEEEec-CchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          153 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       153 g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      ||.+.|-|. +.||+++|+.|...|++|++++|+.+
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~   37 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEE   37 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            566677775 45999999999999999999998754

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.47  E-value=0.71  Score=36.81  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=29.7

Q ss_pred             CEEEEEec-CchHHHHHHHhc---cCCCEEEEEcCCCCC
Q 024297          154 KTVFILGF-GNIGVELAKRLR---PFGVKIIATKRSWAS  188 (269)
Q Consensus       154 ~~vgIiG~-G~iG~~~a~~l~---~~G~~V~~~~~~~~~  188 (269)
                      |||.|.|. +.||+++|+.|.   .-|++|+..+|+.++
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~   41 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQ   41 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            68999996 679999999885   469999999998765

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.29  E-value=0.33  Score=38.04  Aligned_cols=32  Identities=25%  Similarity=0.320  Sum_probs=29.3

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      -|.|||.|..|...|..+..+|++|..++...
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            47899999999999999999999999999654

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=85.19  E-value=0.29  Score=37.59  Aligned_cols=33  Identities=21%  Similarity=0.211  Sum_probs=28.4

Q ss_pred             CEEEEEecCchHHHHHHHhccC--CCEEEEEcCCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSW  186 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~--G~~V~~~~~~~  186 (269)
                      +||.|||.|.+|-++|..|+.+  +.+|+.+++..
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            4799999999999999999876  56899998654

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.13  E-value=0.33  Score=35.77  Aligned_cols=30  Identities=17%  Similarity=0.325  Sum_probs=23.8

Q ss_pred             EEEEEe-cCchHHHHHHHhc-cCCCEEE-EEcC
Q 024297          155 TVFILG-FGNIGVELAKRLR-PFGVKII-ATKR  184 (269)
Q Consensus       155 ~vgIiG-~G~iG~~~a~~l~-~~G~~V~-~~~~  184 (269)
                      ||+|+| .|+||+++++.+. .-++++. ++|+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~   33 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDA   33 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence            699999 6999999999876 5688855 4554

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=84.99  E-value=0.22  Score=38.82  Aligned_cols=32  Identities=25%  Similarity=0.351  Sum_probs=29.2

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCEEEEEcCC
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  185 (269)
                      ..|.|||.|..|...|..+..+|.+|..+++.
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            35889999999999999999999999999864

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.96  E-value=0.3  Score=40.59  Aligned_cols=34  Identities=29%  Similarity=0.321  Sum_probs=29.2

Q ss_pred             CEE-EEEe-cCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          154 KTV-FILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       154 ~~v-gIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      |+| .|.| .|-||+.+++.|...|++|++++|...
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~   36 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   36 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            577 5777 678999999999999999999998654

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.59  E-value=0.47  Score=35.47  Aligned_cols=35  Identities=20%  Similarity=0.326  Sum_probs=29.4

Q ss_pred             cCCEEEEEecCchHHHHHHHhccCCCE-EEEEcCCC
Q 024297          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW  186 (269)
Q Consensus       152 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~  186 (269)
                      .+++|.|||-|.+|-..|..+..+|++ |+.+.|..
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            566899999999999999999999984 77776543

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=84.57  E-value=0.32  Score=38.89  Aligned_cols=33  Identities=21%  Similarity=0.298  Sum_probs=30.4

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      .|.|||.|..|...|..|...|.+|++++++..
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~   38 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK   38 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            488999999999999999999999999998754

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=84.54  E-value=0.75  Score=36.76  Aligned_cols=34  Identities=29%  Similarity=0.465  Sum_probs=29.1

Q ss_pred             CCEEEEEe-cCchHHHHHHHhccCCC-EEEEEcCCC
Q 024297          153 GKTVFILG-FGNIGVELAKRLRPFGV-KIIATKRSW  186 (269)
Q Consensus       153 g~~vgIiG-~G~iG~~~a~~l~~~G~-~V~~~~~~~  186 (269)
                      +.++.|.| .|.||+++|+.|...|. +|+.+.|+.
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~   44 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSG   44 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSG
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            45899999 68899999999999998 588887764

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.44  E-value=0.25  Score=37.69  Aligned_cols=29  Identities=17%  Similarity=0.381  Sum_probs=22.2

Q ss_pred             EEEEEecCchHHHHHHHhccC--C--CEEEEEc
Q 024297          155 TVFILGFGNIGVELAKRLRPF--G--VKIIATK  183 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~--G--~~V~~~~  183 (269)
                      +|+|+|+|.+|+.+++.+...  +  .+|.+..
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~   38 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLA   38 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEE
Confidence            689999999999999987742  3  4555554

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=84.42  E-value=0.35  Score=39.80  Aligned_cols=34  Identities=24%  Similarity=0.324  Sum_probs=29.6

Q ss_pred             EEEEEecCchHHHHHHHhc-----cCCCEEEEEcCCCCC
Q 024297          155 TVFILGFGNIGVELAKRLR-----PFGVKIIATKRSWAS  188 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~-----~~G~~V~~~~~~~~~  188 (269)
                      -|.|||.|..|..+|..|.     ..|.+|+++++.+.+
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            4899999999999999995     579999999986544

>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Hypothetical protein YfdW
species: Escherichia coli [TaxId: 562]

Probab=84.42  E-value=1.1  Score=38.46  Aligned_cols=113  Identities=12%  Similarity=0.019  Sum_probs=67.8

Q ss_pred             ccccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccc------c-ccccchhhhccccccccccccC---CCCC
Q 024297          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ------V-SCQSSALAVKNGIIDDLVDEKG---CHED  218 (269)
Q Consensus       149 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~---~~~~  218 (269)
                      +.|.|-+|.=++-.-.|-..+++|..+|++|+=+.+.......      . ...+.-|...|-.=....-.+.   ..+-
T Consensus         3 ~PL~GirVld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~~~   82 (417)
T d1q7ea_           3 TPLQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGKEV   82 (417)
T ss_dssp             CTTTTCEEEECCCTTHHHHHHHHHHHTTCEEEEEECTTTCCGGGTTTCSSTTSCCHHHHTTCTTCEEEECCTTSHHHHHH
T ss_pred             CCCCCCEEEEcCChhHHHHHHHHHHHhCCeEEEECCCCCCCchhccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHHHH
Confidence            4689999999998888999999999999999999853211000      0 0000011111110001111111   1234


Q ss_pred             HHHHHhhCCEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEcc
Q 024297          219 IFEFASKADVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFMF  262 (269)
Q Consensus       219 l~ell~~aDvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~~  262 (269)
                      +.+|+++|||||-..+...--+-=++.+.++ ...|+-+.+.++
T Consensus        83 ~~~Li~~aDv~i~n~~pg~~~rlGl~~~~l~-~~nP~lI~~sis  125 (417)
T d1q7ea_          83 MEKLIREADILVENFHPGAIDHMGFTWEHIQ-EINPRLIFGSIK  125 (417)
T ss_dssp             HHHHHHHCSEEEECCCC-------CCHHHHH-HHCTTCEEEEEE
T ss_pred             HHHHHhcCcccEeccCCCcHhhcCCCHHHHH-hhCCCEEEEeee
Confidence            7799999999998876443334446888999 888998887764

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.41  E-value=0.36  Score=39.82  Aligned_cols=33  Identities=27%  Similarity=0.240  Sum_probs=29.6

Q ss_pred             CEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       154 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      |++.|.| .|-||+.+++.|...|++|++++|..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            6777777 89999999999999999999999854

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.81  E-value=0.34  Score=40.34  Aligned_cols=35  Identities=26%  Similarity=0.278  Sum_probs=30.5

Q ss_pred             cCCEEEEEe-cCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       152 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      .-|++.|.| .|-||+.+++.|...|.+|+++|+..
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~   50 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   50 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            346888888 89999999999999999999998643

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=82.99  E-value=0.36  Score=37.83  Aligned_cols=32  Identities=28%  Similarity=0.245  Sum_probs=29.2

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCCC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~  186 (269)
                      -|.|||.|..|...|..|..+|.+|+.+++..
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            37899999999999999999999999998654

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.78  E-value=0.96  Score=32.77  Aligned_cols=38  Identities=26%  Similarity=0.352  Sum_probs=34.3

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCC
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~  187 (269)
                      -.+||+|.|+|.|+-+-..|..|..+--+|+.+.|...
T Consensus        31 ~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   68 (130)
T d1vdca2          31 IFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDA   68 (130)
T ss_dssp             GGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             HhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccc
Confidence            45799999999999999999999999999999987543

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.51  E-value=0.38  Score=37.18  Aligned_cols=30  Identities=20%  Similarity=0.398  Sum_probs=28.0

Q ss_pred             EEEEecCchHHHHHHHhccCCCEEEEEcCC
Q 024297          156 VFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (269)
Q Consensus       156 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  185 (269)
                      |.|||.|..|...|..+..+|.+|..++..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            779999999999999999999999999853

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.32  E-value=0.33  Score=36.05  Aligned_cols=30  Identities=33%  Similarity=0.485  Sum_probs=26.8

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEE
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKI  179 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V  179 (269)
                      .-.|++|.|||.|.+|..+|..+..+|+++
T Consensus        26 ~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          26 APVGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCCCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             cccCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            346899999999999999999999999863

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=82.15  E-value=0.46  Score=38.50  Aligned_cols=37  Identities=19%  Similarity=0.302  Sum_probs=31.4

Q ss_pred             ccCCEEEEEecCchHHHHHHHhcc-CCCEEEEEcCCCC
Q 024297          151 LLGKTVFILGFGNIGVELAKRLRP-FGVKIIATKRSWA  187 (269)
Q Consensus       151 l~g~~vgIiG~G~iG~~~a~~l~~-~G~~V~~~~~~~~  187 (269)
                      ..+.-|.|||.|.-|..+|..|.. .|.+|.++++.+.
T Consensus        31 ~~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          31 YAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             HTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            455679999999999999998754 7999999997653

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.26  E-value=0.49  Score=38.11  Aligned_cols=39  Identities=23%  Similarity=0.245  Sum_probs=32.2

Q ss_pred             cccCCEEEEEecC-chHHHHHHHhc---cCCCEEEEEcCCCCC
Q 024297          150 TLLGKTVFILGFG-NIGVELAKRLR---PFGVKIIATKRSWAS  188 (269)
Q Consensus       150 ~l~g~~vgIiG~G-~iG~~~a~~l~---~~G~~V~~~~~~~~~  188 (269)
                      .|.||++.|-|.+ .||+++|+.|.   .-|++|+.++|+.++
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~   45 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESM   45 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHH
Confidence            5888888888875 69999999985   469999999987643

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.47  E-value=0.079  Score=41.61  Aligned_cols=25  Identities=24%  Similarity=0.264  Sum_probs=22.4

Q ss_pred             CEEEEEecCchHHHHHHHhccCCCE
Q 024297          154 KTVFILGFGNIGVELAKRLRPFGVK  178 (269)
Q Consensus       154 ~~vgIiG~G~iG~~~a~~l~~~G~~  178 (269)
                      .+|.|||.|-+|..+|..|+..|.+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~   25 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHS   25 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCC
Confidence            4799999999999999999988863

>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: 2-methylacyl-CoA racemase Mcr
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.43  E-value=1.4  Score=36.89  Aligned_cols=105  Identities=16%  Similarity=0.028  Sum_probs=69.1

Q ss_pred             cccCCEEEEEecCchHHHHHHHhccCCCEEEEEcCCCCCccccccccchhhhccccccccccccC---CCCCHHHHHhhC
Q 024297          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASKA  226 (269)
Q Consensus       150 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~a  226 (269)
                      .|.|-+|.=++-+--|-..+++|..+|++|+=+.+..... ....    ..+..|. ..+.-.+.   ..+-+.+|+++|
T Consensus         3 PL~girVld~~~~~agp~~~~~lad~GA~VikvE~p~~~~-~~~~----~~~nr~K-~si~lDl~~~~g~~~~~~Lv~~a   76 (359)
T d1x74a1           3 PLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVD-GISR----DAMLRNR-RIVTADLKSDQGLELALKLIAKA   76 (359)
T ss_dssp             TTTTCEEEEECCSTHHHHHHHHHHHTTCEEEEEECC------CCC----CGGGCSC-EEEECCTTSHHHHHHHHHHHTTC
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHhCCEEEEECCCCCCC-chhh----hhhhCCC-eEEEEeCcCHHHHHHHHHHHhhC
Confidence            5889999999999889999999999999999998643221 1000    1111221 01111111   124578999999


Q ss_pred             CEEEEecCCCccccCcCCHHHHhhhCCCCcEEEEc
Q 024297          227 DVVVCCLSLNKQTVKLCSSSLSSKSMFFATYVVFM  261 (269)
Q Consensus       227 Dvvv~~lp~t~~t~~li~~~~l~~~mk~ga~lIN~  261 (269)
                      |||+-..+...-.+-=++.+.++ ...|+-+.+.+
T Consensus        77 Dv~i~n~~pg~~~~lgl~~~~l~-~~nP~lI~~si  110 (359)
T d1x74a1          77 DVLIEGYRPGVTERLGLGPEECA-KVNDRLIYARM  110 (359)
T ss_dssp             SEEEECSCTTHHHHHTCSHHHHH-HHCTTCEEEEE
T ss_pred             CEEEecCCCCchhhcCCCHHHHH-hhcCCceEEEE
Confidence            99998765443334445899999 89999988876

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.40  E-value=0.51  Score=36.30  Aligned_cols=31  Identities=23%  Similarity=0.367  Sum_probs=28.4

Q ss_pred             EEEEEecCchHHHHHHHhccCCCEEEEEcCC
Q 024297          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (269)
Q Consensus       155 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~  185 (269)
                      -|.|||.|..|...|..+..+|.+|.++++.
T Consensus         5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~   35 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            4789999999999999999999999999764