Citrus Sinensis ID: 024304

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MAPQIDSARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEccccccccccEEEEEEEcccEEEEEEccccccccccHHHHHHHHHHHHHHcccccccEEEEEcccccccccccccHHHccccHHHHHHcccccHHHHHHHHHcccccEEEEEccEEcccHHHHHHHHHHHHHHcccccccccccEEccccccHHHHHHHHHcHHHHHHHHHHcccccHHHHHHccccccccccccHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHcHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHccccccccEEEEEEEccccEEEEEEccHHHHHcccHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEccccHHHHcccccccHcHHHHHcHHHHHHHHHHccccEEEEEccEEEcHHHHHHHHccEEEEEcccEEEcHHHHHccccccccccHHHHHHcHHHHHHHHHHcccEEHHHHHHcccccEEEccccHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MAPQIDSARRRMTAVANHLvpvissdsnsgfiglnnasmndsyhrihgevpshdvvwriacdesgtefTDIIYEKAVGEGIAkitinrpdrrnafrpHTVKELIRAFndarddssvGVIILTgkgteafcsggdqalrtrdgyadyenfgrlnvLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTiaadnaifgqtgpkvgsfdagygssimsrlvgpKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH
Flexible Loop (DISEMBL)
MAPQIDSARRRMTAVANHLVpvissdsnsgFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIakitinrpdrrnafRPHTVKELIrafndarddssVGVIILtgkgteafcsggdQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH
Low Complexity Region (SEG)
MAPQIDSARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH
Disordered region (IsUnstruct)
**************VANHLVPVIS****SGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTK****
Disordered Region (DISOPRED)
************TAVANHL***********************************VVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH
Disordered Region (DISEMBL)
**********RMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH
Disordered Region (DISPRO)
*****DSARRRMTAVANHLVPV*******************************DVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPQIDSARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
Q8GYN9	337	1,4-Dihydroxy-2-naphthoyl	yes	no	0.933	0.744	0.760	1e-112
Q9CLV5	285	1,4-Dihydroxy-2-naphthoyl	yes	no	0.754	0.712	0.650	9e-72
P0ABU0	285	1,4-Dihydroxy-2-naphthoyl	N/A	no	0.739	0.698	0.642	3e-69
P0ABU1	285	1,4-Dihydroxy-2-naphthoyl	yes	no	0.739	0.698	0.642	3e-69
Q7CQ56	285	1,4-Dihydroxy-2-naphthoyl	yes	no	0.739	0.698	0.638	3e-69
P44960	285	1,4-Dihydroxy-2-naphthoyl	yes	no	0.691	0.652	0.680	4e-69
P23966	271	1,4-Dihydroxy-2-naphthoyl	yes	no	0.687	0.682	0.673	4e-68
Q5HQC3	272	1,4-Dihydroxy-2-naphthoyl	yes	no	0.706	0.698	0.661	6e-67
Q4L549	272	1,4-Dihydroxy-2-naphthoyl	yes	no	0.706	0.698	0.661	6e-67
Q49WG8	272	1,4-Dihydroxy-2-naphthoyl	yes	no	0.706	0.698	0.651	7e-67

>sp|Q8GYN9|MENB_ARATH 1,4-Dihydroxy-2-naphthoyl-CoA synthase, peroxisomal OS=Arabidopsis thaliana GN=MENB PE=1 SV=2

 Score =  403 bits (1035), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/255 (76%), Positives = 222/255 (87%), Gaps = 4/255 (1%)

Query: 4   QIDSARRRMTAVANHLVPVISSDSNSGFIGLNNAS-MNDSYHRIHGEVPSHDVVWR---I 59
           ++ SA RR++ V NHL+P+  S + +  + L +AS M+D +H++HGEVP+H+VVW+    
Sbjct: 6   ELGSASRRLSVVTNHLIPIGFSPARADSVELCSASSMDDRFHKVHGEVPTHEVVWKKTDF 65

Query: 60  ACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVI 119
             +    EF DIIYEKA+ EGIAKITINRP+RRNAFRP TVKEL+RAFNDARDDSSVGVI
Sbjct: 66  FGEGDNKEFVDIIYEKALDEGIAKITINRPERRNAFRPQTVKELMRAFNDARDDSSVGVI 125

Query: 120 ILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 179
           ILTGKGT+AFCSGGDQALRT+DGYAD  + GRLNVLDLQVQIRRLPKPVIAMVAGYAVGG
Sbjct: 126 ILTGKGTKAFCSGGDQALRTQDGYADPNDVGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 185

Query: 180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE 239
           GH+LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWF+ RFYTA 
Sbjct: 186 GHILHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFMTRFYTAS 245

Query: 240 EAEKMGLVNTVVPVS 254
           EAEKMGL+NTVVP+ 
Sbjct: 246 EAEKMGLINTVVPLE 260

Involved in the biosynthesis of phylloquinone (vitamin K1). Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA).
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 1EC: .EC: 3EC: .EC: 3EC: 6

>sp|Q9CLV5|MENB_PASMU 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Pasteurella multocida (strain Pm70) GN=menB PE=3 SV=1

 Score =  270 bits (690), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 134/206 (65%), Positives = 161/206 (78%), Gaps = 3/206 (1%)

Query: 51  PSHDVVWR-IACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFND 109
           P  DV++  I   +    +TDI+Y K++ +GIAKITINRP+ RNAFRP TVKE+I+AF D
Sbjct: 4   PKDDVLYAPIEWQDHSEGYTDILYHKSL-DGIAKITINRPEVRNAFRPQTVKEMIQAFAD 62

Query: 110 ARDDSSVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRLPKPV 168
           AR D  +GVI+LTG+G +AFCSGGDQ +R    GY D      LNVLD Q  IR  PKPV
Sbjct: 63  ARFDEQIGVIVLTGQGEKAFCSGGDQKVRGDYGGYQDESGVHHLNVLDFQRDIRTCPKPV 122

Query: 169 IAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228
           +AMVAGYA+GGGHVLHM+CDLTIAADNAIFGQTGPKVGSFD G+G+S M+R+VG KKARE
Sbjct: 123 VAMVAGYAIGGGHVLHMICDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKARE 182

Query: 229 MWFLARFYTAEEAEKMGLVNTVVPVS 254
           +WFL R Y A+EA +MGLVNTVVP +
Sbjct: 183 IWFLCRQYDAKEALEMGLVNTVVPYA 208

Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA).

Pasteurella multocida (strain Pm70) (taxid: 272843)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: 6

>sp|P0ABU0|MENB_ECOLI 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Escherichia coli (strain K12) GN=menB PE=1 SV=1

 Score =  261 bits (668), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 135/210 (64%), Positives = 158/210 (75%), Gaps = 11/210 (5%)

Query: 46  IHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIR 105
           ++  V  HD      C E    F DI YEK+  +GIAKITINRP  RNAFRP TVKE+I+
Sbjct: 9   LYAPVEWHD------CSEG---FEDIRYEKST-DGIAKITINRPQVRNAFRPLTVKEMIQ 58

Query: 106 AFNDARDDSSVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRL 164
           A  DAR D ++GVIILTG G +AFCSGGDQ +R    GY D      LNVLD Q QIR  
Sbjct: 59  ALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTC 118

Query: 165 PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224
           PKPV+AMVAGY++GGGHVLHM+CDLTIAADNAIFGQTGPKVGSFD G+G+S M+R+VG K
Sbjct: 119 PKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQK 178

Query: 225 KAREMWFLARFYTAEEAEKMGLVNTVVPVS 254
           KARE+WFL R Y A++A  MGLVNTVVP++
Sbjct: 179 KAREIWFLCRQYDAKQALDMGLVNTVVPLA 208

Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA).

Escherichia coli (strain K12) (taxid: 83333)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: 6

>sp|P0ABU1|MENB_ECOL6 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=menB PE=3 SV=1

 Score =  261 bits (668), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 135/210 (64%), Positives = 158/210 (75%), Gaps = 11/210 (5%)

Query: 46  IHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIR 105
           ++  V  HD      C E    F DI YEK+  +GIAKITINRP  RNAFRP TVKE+I+
Sbjct: 9   LYAPVEWHD------CSEG---FEDIRYEKST-DGIAKITINRPQVRNAFRPLTVKEMIQ 58

Query: 106 AFNDARDDSSVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRL 164
           A  DAR D ++GVIILTG G +AFCSGGDQ +R    GY D      LNVLD Q QIR  
Sbjct: 59  ALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTC 118

Query: 165 PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224
           PKPV+AMVAGY++GGGHVLHM+CDLTIAADNAIFGQTGPKVGSFD G+G+S M+R+VG K
Sbjct: 119 PKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQK 178

Query: 225 KAREMWFLARFYTAEEAEKMGLVNTVVPVS 254
           KARE+WFL R Y A++A  MGLVNTVVP++
Sbjct: 179 KAREIWFLCRQYDAKQALDMGLVNTVVPLA 208

Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA).

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: 6

>sp|Q7CQ56|MENB_SALTY 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=menB PE=1 SV=1

 Score =  261 bits (668), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 134/210 (63%), Positives = 160/210 (76%), Gaps = 11/210 (5%)

Query: 46  IHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIR 105
           ++  V  HD      C E    +TDI YEK+  +GIAKITINRP  RNAFRP TVKE+I+
Sbjct: 9   LYAPVEWHD------CSEG---YTDIRYEKST-DGIAKITINRPQVRNAFRPLTVKEMIQ 58

Query: 106 AFNDARDDSSVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRL 164
           A  DAR D +VGVIILTG+G +AFC+GGDQ +R    GY D      LNVLD Q QIR  
Sbjct: 59  ALADARYDDNVGVIILTGEGDKAFCAGGDQKVRGDYGGYQDDSGVHHLNVLDFQRQIRTC 118

Query: 165 PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224
           PKPV+AMVAGY++GGGHVLHM+CDLTIAA+NAIFGQTGPKVGSFD G+G+S M+R+VG K
Sbjct: 119 PKPVVAMVAGYSIGGGHVLHMMCDLTIAAENAIFGQTGPKVGSFDGGWGASYMARIVGQK 178

Query: 225 KAREMWFLARFYTAEEAEKMGLVNTVVPVS 254
           KARE+WFL R Y A++A  MGLVNTVVP++
Sbjct: 179 KAREIWFLCRQYDAQQALDMGLVNTVVPLA 208

Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA).

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: 6

>sp|P44960|MENB_HAEIN 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=menB PE=3 SV=1

 Score =  261 bits (667), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 128/188 (68%), Positives = 152/188 (80%), Gaps = 2/188 (1%)

Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           ++DI Y K+  +GIAKITINRP+ RNAFRP TVKE++ AF+DAR D ++GVI+LTG+G +
Sbjct: 22  YSDIRYHKST-DGIAKITINRPEVRNAFRPQTVKEMMTAFSDARFDENIGVIVLTGEGEK 80

Query: 128 AFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
           AFCSGGDQ +R    GY D      LNVLD Q  IR  PKPV+AMVAGYA+GGGHVLHM+
Sbjct: 81  AFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRDIRSCPKPVVAMVAGYAIGGGHVLHML 140

Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
           CDLTIAA+NAIFGQTGPKVGSFD G+G+S M+RLVG KKARE+WFL R Y A+EA  MGL
Sbjct: 141 CDLTIAAENAIFGQTGPKVGSFDGGWGASYMARLVGQKKAREIWFLCRQYNAQEALDMGL 200

Query: 247 VNTVVPVS 254
           VNTVVP +
Sbjct: 201 VNTVVPYA 208

Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA).

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: 6

>sp|P23966|MENB_BACSU 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Bacillus subtilis (strain 168) GN=menB PE=1 SV=2

 Score =  258 bits (658), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 126/187 (67%), Positives = 148/187 (79%), Gaps = 2/187 (1%)

Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           + +I+YE     GIAKITINRP+  NAF P TV E+I AF DARDD +VGVI+L G G +
Sbjct: 10  YDEILYETY--NGIAKITINRPEVHNAFTPKTVAEMIDAFADARDDQNVGVIVLAGAGDK 67

Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
           AFCSGGDQ +R   GY   +   RLNVLDLQ  IR +PKPV+AMV+GYA+GGGHVLH+VC
Sbjct: 68  AFCSGGDQKVRGHGGYVGDDQIPRLNVLDLQRLIRVIPKPVVAMVSGYAIGGGHVLHIVC 127

Query: 188 DLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLV 247
           DLTIAADNAIFGQTGPKVGSFDAGYGS  ++R+VG KKARE+W+L R Y A+EA  MGLV
Sbjct: 128 DLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLV 187

Query: 248 NTVVPVS 254
           NTVVP+ 
Sbjct: 188 NTVVPLE 194

Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA).

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: 6

>sp|Q5HQC3|MENB_STAEQ 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=menB PE=3 SV=1

 Score =  254 bits (648), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 127/192 (66%), Positives = 152/192 (79%), Gaps = 2/192 (1%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
           E+  E+ +I YE    EGIAK+TINRP+ RNAF P TV E+I AF+ ARDD +V VI+LT
Sbjct: 6   ETLREYDEIKYE--FFEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLT 63

Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
           G+G +AFCSGGDQ  R   GY   ++  RLNVLDLQ  IR +PKPVIAMV GYA+GGG+V
Sbjct: 64  GEGDKAFCSGGDQKKRGHGGYVGEDDIPRLNVLDLQRLIRVIPKPVIAMVRGYAIGGGNV 123

Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
           L++VCDLTIAADNAIFGQTGPKVGSFDAGYGS  ++R+VG KKARE+W+L R Y A+EA 
Sbjct: 124 LNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEAL 183

Query: 243 KMGLVNTVVPVS 254
            MGLVNTVVP+ 
Sbjct: 184 DMGLVNTVVPLE 195

Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA).

Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (taxid: 176279)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: 6

>sp|Q4L549|MENB_STAHJ 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=menB PE=3 SV=1

 Score =  254 bits (648), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 127/192 (66%), Positives = 151/192 (78%), Gaps = 2/192 (1%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
           E+  E+ +I YE    EGIAK+TINRP+ RNAF P TV E+I AF+ ARDD ++ VIILT
Sbjct: 6   ETLREYDEIKYE--FYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNISVIILT 63

Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
           G+G +AFCSGGDQ  R   GY   +   RLNVLDLQ  IR +PKPVIAMV GYA+GGG+V
Sbjct: 64  GEGDKAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRVIPKPVIAMVRGYAIGGGNV 123

Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
           L++VCDLTIAADNAIFGQTGPKVGSFDAGYGS  ++R+VG KKARE+W+L R Y A+EA 
Sbjct: 124 LNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEAL 183

Query: 243 KMGLVNTVVPVS 254
            MGLVNTVVP+ 
Sbjct: 184 DMGLVNTVVPLD 195

Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA).

Staphylococcus haemolyticus (strain JCSC1435) (taxid: 279808)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: 6

>sp|Q49WG8|MENB_STAS1 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=menB PE=3 SV=1

 Score =  253 bits (647), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 125/192 (65%), Positives = 153/192 (79%), Gaps = 2/192 (1%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
           E+  E+ +I YE  + +GIAK+TINRP+ RNAF P+TV+E+I AF  ARDD  + VIILT
Sbjct: 6   ETIREYKEIKYE--LYDGIAKVTINRPEVRNAFTPNTVQEMIDAFTRARDDQRISVIILT 63

Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
           G+G +AFCSGGDQ +R   GY   +   RLNVLDLQ  IR +PKPV+AMV GYA+GGG+V
Sbjct: 64  GEGDKAFCSGGDQKVRGHGGYVGDDQIPRLNVLDLQRLIRVIPKPVVAMVRGYAIGGGNV 123

Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
           L++VCDLTIAADNAIFGQTGPKVGSFDAGYGS  ++R+VG KKARE+W+L R Y A+EA 
Sbjct: 124 LNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEAL 183

Query: 243 KMGLVNTVVPVS 254
            MGLVNTVVP+ 
Sbjct: 184 DMGLVNTVVPLD 195

Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA).

Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) (taxid: 342451)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
147771137	336	hypothetical protein VITISV_034257 [Viti	0.918	0.735	0.813	1e-117
255568782	335	Naphthoate synthase, putative [Ricinus c	0.940	0.755	0.798	1e-116
225425573	336	PREDICTED: 1,4-Dihydroxy-2-naphthoyl-CoA	0.910	0.729	0.816	1e-116
307135970	333	naphthoate synthase [Cucumis melo subsp.	0.903	0.729	0.815	1e-114
449517563	333	PREDICTED: 1,4-Dihydroxy-2-naphthoyl-CoA	0.903	0.729	0.807	1e-113
449434935	333	PREDICTED: 1,4-Dihydroxy-2-naphthoyl-CoA	0.903	0.729	0.803	1e-112
359806589	339	uncharacterized protein LOC100807101 [Gl	0.929	0.737	0.770	1e-111
297837457	337	hypothetical protein ARALYDRAFT_475277 [	0.940	0.750	0.754	1e-110
30696431	337	naphthoate synthase [Arabidopsis thalian	0.933	0.744	0.760	1e-110
259490362	336	uncharacterized protein LOC100304279 [Ze	0.929	0.744	0.756	1e-110

>gi|147771137|emb|CAN74179.1| hypothetical protein VITISV_034257 [Vitis vinifera]

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/247 (81%), Positives = 220/247 (89%)

Query: 7   SARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGT 66
           +ARRR+ +VA+HL P+ S+  N   +G +  S  DSY R+HGEVP+HDV W  ACDESG 
Sbjct: 12  NARRRLASVAHHLTPLHSTTPNCSSLGFHTTSAPDSYRRVHGEVPTHDVTWNPACDESGK 71

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
            FTDIIYEKAVGE IAKITINRP+RRNAFRP+TVKELIRAFNDARDDSSVGVII TGKGT
Sbjct: 72  AFTDIIYEKAVGEAIAKITINRPERRNAFRPNTVKELIRAFNDARDDSSVGVIIFTGKGT 131

Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
           +AFCSGGDQA R RDGYAD+++FGRLNVLDLQ+QIRRLPKPVIAMVAGYAVGGGHVLHMV
Sbjct: 132 KAFCSGGDQAFRGRDGYADHDDFGRLNVLDLQMQIRRLPKPVIAMVAGYAVGGGHVLHMV 191

Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
           CDLTIAADNAIFGQTGPKVGSFD GYGSSIMSRL+GPKKAREMWF ARFYTA EAEKMGL
Sbjct: 192 CDLTIAADNAIFGQTGPKVGSFDXGYGSSIMSRLIGPKKAREMWFTARFYTASEAEKMGL 251

Query: 247 VNTVVPV 253
           VN VVP+
Sbjct: 252 VNIVVPL 258

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568782|ref|XP_002525362.1| Naphthoate synthase, putative [Ricinus communis] gi|223535325|gb|EEF37000.1| Naphthoate synthase, putative [Ricinus communis]

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/253 (79%), Positives = 223/253 (88%)

Query: 4   QIDSARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDE 63
           ++D+  RR+  V NHL PV  S ++S     N +S+++SYHRIHGEV +  V+W+ ACDE
Sbjct: 8   EMDALGRRLATVTNHLNPVAPSSNHSPIDLSNTSSIDNSYHRIHGEVSNEQVIWKNACDE 67

Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
            G EFTDIIYEKAVGEGIAKITINRP+RRNAFRP TVKE+IRAFNDARDDSS+GVIILTG
Sbjct: 68  YGKEFTDIIYEKAVGEGIAKITINRPERRNAFRPQTVKEMIRAFNDARDDSSIGVIILTG 127

Query: 124 KGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
           KGT+AFCSGGDQ+LRT DGYAD  + GRLNVLDLQVQIRRLPKP+IAMVAGYAVGGGHVL
Sbjct: 128 KGTKAFCSGGDQSLRTADGYADPNDMGRLNVLDLQVQIRRLPKPIIAMVAGYAVGGGHVL 187

Query: 184 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEK 243
           HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTA EAEK
Sbjct: 188 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTASEAEK 247

Query: 244 MGLVNTVVPVSLF 256
           MGLVNTVVP+   
Sbjct: 248 MGLVNTVVPLETL 260

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425573|ref|XP_002267500.1| PREDICTED: 1,4-Dihydroxy-2-naphthoyl-CoA synthase, peroxisomal [Vitis vinifera] gi|297739062|emb|CBI28551.3| unnamed protein product [Vitis vinifera]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/245 (81%), Positives = 219/245 (89%)

Query: 7   SARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGT 66
           +ARRR+ +VA+HL P+ S+  N   +G +  S  DSY R+HGEVP+HDV W  ACDESG 
Sbjct: 12  NARRRLASVAHHLTPLHSTTPNCSSLGFHTTSAPDSYRRVHGEVPTHDVTWNPACDESGK 71

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
            FTDIIYEKAVGE IAKITINRP+RRNAFRP+TVKELIRAFNDARDDSSVGVII TGKGT
Sbjct: 72  AFTDIIYEKAVGEAIAKITINRPERRNAFRPNTVKELIRAFNDARDDSSVGVIIFTGKGT 131

Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
           +AFCSGGDQA R RDGYAD+++FGRLNVLDLQ+QIRRLPKPVIAMVAGYAVGGGHVLHMV
Sbjct: 132 KAFCSGGDQAFRGRDGYADHDDFGRLNVLDLQMQIRRLPKPVIAMVAGYAVGGGHVLHMV 191

Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
           CDLTIAADNAIFGQTGPKVGSFD+GYGSSIMSRL+GPKKAREMWF ARFYTA EAEKMGL
Sbjct: 192 CDLTIAADNAIFGQTGPKVGSFDSGYGSSIMSRLIGPKKAREMWFTARFYTASEAEKMGL 251

Query: 247 VNTVV 251
           VN VV
Sbjct: 252 VNIVV 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307135970|gb|ADN33829.1| naphthoate synthase [Cucumis melo subsp. melo]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/244 (81%), Positives = 221/244 (90%), Gaps = 1/244 (0%)

Query: 10  RRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFT 69
           RR+ ++++HLVP I    N   I L++AS++DSYHR HG V +H VVW IA DE G EFT
Sbjct: 13  RRVASISSHLVP-IPQTPNPDSIHLSSASIDDSYHRKHGTVSTHPVVWSIAGDEFGKEFT 71

Query: 70  DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF 129
           DIIYEKAVGE IAKITINRP+RRNAFRP T+KELIRAFNDARDDSS+GVIILTGKGTEAF
Sbjct: 72  DIIYEKAVGEAIAKITINRPERRNAFRPQTIKELIRAFNDARDDSSIGVIILTGKGTEAF 131

Query: 130 CSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL 189
           CSGGDQALR +DGY+DY++FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH+LHMVCDL
Sbjct: 132 CSGGDQALRKKDGYSDYDDFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHILHMVCDL 191

Query: 190 TIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNT 249
           TIAA+NAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFL RFY+A EA+KMGLVNT
Sbjct: 192 TIAAENAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTRFYSASEADKMGLVNT 251

Query: 250 VVPV 253
           VVP+
Sbjct: 252 VVPL 255

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517563|ref|XP_004165815.1| PREDICTED: 1,4-Dihydroxy-2-naphthoyl-CoA synthase, peroxisomal-like [Cucumis sativus]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/244 (80%), Positives = 220/244 (90%), Gaps = 1/244 (0%)

Query: 10  RRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFT 69
           RR+ ++++HLVP I    N   I L++AS++DSYHR HG V +H VVW  A DE G EFT
Sbjct: 13  RRVASISSHLVP-IPQTPNPDSIHLSSASIDDSYHRKHGTVSTHPVVWSKAGDEFGKEFT 71

Query: 70  DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF 129
           DIIYEKAVGE IAKITINRP+RRNAFRP T+KELIRAFNDARDDSS+GV+ILTGKGTEAF
Sbjct: 72  DIIYEKAVGEAIAKITINRPERRNAFRPQTIKELIRAFNDARDDSSIGVVILTGKGTEAF 131

Query: 130 CSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL 189
           CSGGDQALR +DGY+DY++FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH+LHMVCDL
Sbjct: 132 CSGGDQALRKKDGYSDYDDFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHILHMVCDL 191

Query: 190 TIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNT 249
           TIAA+NAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFL RFY+A EA+KMGLVNT
Sbjct: 192 TIAAENAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTRFYSASEADKMGLVNT 251

Query: 250 VVPV 253
           VVP+
Sbjct: 252 VVPL 255

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434935|ref|XP_004135251.1| PREDICTED: 1,4-Dihydroxy-2-naphthoyl-CoA synthase, peroxisomal-like [Cucumis sativus]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/244 (80%), Positives = 219/244 (89%), Gaps = 1/244 (0%)

Query: 10  RRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFT 69
           RR+ ++++HLVP I    N   I L++AS++DSYHR HG V +  VVW  A DE G EFT
Sbjct: 13  RRVASISSHLVP-IPQTPNPDSIHLSSASIDDSYHRKHGTVSTLPVVWSKAGDEFGKEFT 71

Query: 70  DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF 129
           DIIYEKAVGE IAKITINRP+RRNAFRP T+KELIRAFNDARDDSS+GV+ILTGKGTEAF
Sbjct: 72  DIIYEKAVGEAIAKITINRPERRNAFRPQTIKELIRAFNDARDDSSIGVVILTGKGTEAF 131

Query: 130 CSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL 189
           CSGGDQALR +DGY+DY++FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH+LHMVCDL
Sbjct: 132 CSGGDQALRKKDGYSDYDDFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHILHMVCDL 191

Query: 190 TIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNT 249
           TIAA+NAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFL RFY+A EA+KMGLVNT
Sbjct: 192 TIAAENAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTRFYSASEADKMGLVNT 251

Query: 250 VVPV 253
           VVP+
Sbjct: 252 VVPL 255

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806589|ref|NP_001241269.1| uncharacterized protein LOC100807101 [Glycine max] gi|255639630|gb|ACU20109.1| unknown [Glycine max]

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/253 (77%), Positives = 216/253 (85%), Gaps = 3/253 (1%)

Query: 4   QIDSARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIAC-- 61
            +++A RR+ +V NHL P    ++         +  N+S+ R+HGEVPSHDVVWRI    
Sbjct: 9   HLETATRRLASVTNHLTPSSYHNAPGELAPCLTSGGNNSFRRVHGEVPSHDVVWRIVASD 68

Query: 62  -DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVII 120
            D SG +FTDI+YEKAVGEGIAKI+INRP+RRNAFRPHTVKEL+RAF DARDDSS+GV+I
Sbjct: 69  HDNSGKDFTDIVYEKAVGEGIAKISINRPERRNAFRPHTVKELMRAFTDARDDSSIGVVI 128

Query: 121 LTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGG 180
           LTGKGTEAFCSGGDQALRT DGY+D  +F  LNVLDLQVQIRRLPKPVIAMVAGYAVGGG
Sbjct: 129 LTGKGTEAFCSGGDQALRTNDGYSDNGSFSSLNVLDLQVQIRRLPKPVIAMVAGYAVGGG 188

Query: 181 HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEE 240
           HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFL RFY A E
Sbjct: 189 HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTRFYDAVE 248

Query: 241 AEKMGLVNTVVPV 253
           AEKMGLVNTVVP+
Sbjct: 249 AEKMGLVNTVVPL 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297837457|ref|XP_002886610.1| hypothetical protein ARALYDRAFT_475277 [Arabidopsis lyrata subsp. lyrata] gi|297332451|gb|EFH62869.1| hypothetical protein ARALYDRAFT_475277 [Arabidopsis lyrata subsp. lyrata]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/257 (75%), Positives = 223/257 (86%), Gaps = 4/257 (1%)

Query: 4   QIDSARRRMTAVANHLVPVISSDSNSGFIGLNNAS-MNDSYHRIHGEVPSHDVVWRIA-- 60
           ++ SA RR++ V NHL+P+  + +    + L +AS M+DS+H++HGEVP+H+ VW+ A  
Sbjct: 6   ELGSASRRISVVTNHLIPIGFNPTRVDSVELCSASSMDDSFHKVHGEVPTHEAVWKKAEF 65

Query: 61  -CDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVI 119
             D    EF DIIYEKA+ EGIAKITINRP+RRNAFRP TVKEL+RAFNDARDDSSVGVI
Sbjct: 66  FVDGDNKEFVDIIYEKALDEGIAKITINRPERRNAFRPLTVKELMRAFNDARDDSSVGVI 125

Query: 120 ILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 179
           ILTGKGT+AFCSGGDQALRT+DGYAD  + GRLNVLDLQ+QIRRLPKPVIAMVAGYAVGG
Sbjct: 126 ILTGKGTKAFCSGGDQALRTQDGYADPNDVGRLNVLDLQIQIRRLPKPVIAMVAGYAVGG 185

Query: 180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE 239
           GH+LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWF+ RFYTA 
Sbjct: 186 GHILHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFMTRFYTAS 245

Query: 240 EAEKMGLVNTVVPVSLF 256
           EAEKMGL+NTVVP+ + 
Sbjct: 246 EAEKMGLINTVVPLEML 262

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30696431|ref|NP_176255.2| naphthoate synthase [Arabidopsis thaliana] gi|327488386|sp|Q8GYN9.2|MENB_ARATH RecName: Full=1,4-Dihydroxy-2-naphthoyl-CoA synthase, peroxisomal; Short=DHNS; AltName: Full=Enoyl-CoA hydratase/isomerase D; Short=ECHID; AltName: Full=Naphthoate synthase gi|192571726|gb|ACF04808.1| At1g60550 [Arabidopsis thaliana] gi|332195575|gb|AEE33696.1| naphthoate synthase [Arabidopsis thaliana]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/255 (76%), Positives = 222/255 (87%), Gaps = 4/255 (1%)

Query: 4   QIDSARRRMTAVANHLVPVISSDSNSGFIGLNNAS-MNDSYHRIHGEVPSHDVVWR---I 59
           ++ SA RR++ V NHL+P+  S + +  + L +AS M+D +H++HGEVP+H+VVW+    
Sbjct: 6   ELGSASRRLSVVTNHLIPIGFSPARADSVELCSASSMDDRFHKVHGEVPTHEVVWKKTDF 65

Query: 60  ACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVI 119
             +    EF DIIYEKA+ EGIAKITINRP+RRNAFRP TVKEL+RAFNDARDDSSVGVI
Sbjct: 66  FGEGDNKEFVDIIYEKALDEGIAKITINRPERRNAFRPQTVKELMRAFNDARDDSSVGVI 125

Query: 120 ILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 179
           ILTGKGT+AFCSGGDQALRT+DGYAD  + GRLNVLDLQVQIRRLPKPVIAMVAGYAVGG
Sbjct: 126 ILTGKGTKAFCSGGDQALRTQDGYADPNDVGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 185

Query: 180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE 239
           GH+LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWF+ RFYTA 
Sbjct: 186 GHILHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFMTRFYTAS 245

Query: 240 EAEKMGLVNTVVPVS 254
           EAEKMGL+NTVVP+ 
Sbjct: 246 EAEKMGLINTVVPLE 260

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259490362|ref|NP_001159194.1| uncharacterized protein LOC100304279 [Zea mays] gi|223942561|gb|ACN25364.1| unknown [Zea mays] gi|414881113|tpg|DAA58244.1| TPA: hypothetical protein ZEAMMB73_624046 [Zea mays]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/259 (75%), Positives = 218/259 (84%), Gaps = 9/259 (3%)

Query: 5   IDSARRRMTAVANHLVPVISSDSNSGFIGLNNASM---------NDSYHRIHGEVPSHDV 55
           +D+A RR+  VA HLVP       +G     + +           DSY R+HG+VPS   
Sbjct: 1   MDAAERRLARVAAHLVPSFPVPHATGPPLAPSPAAASSSSSSPAGDSYRRVHGDVPSEPP 60

Query: 56  VWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSS 115
            WR A DESG EF DIIYEKAVGEGIAKITINRPDRRNAFRP TVKEL+RAFNDARDDSS
Sbjct: 61  EWRTATDESGKEFVDIIYEKAVGEGIAKITINRPDRRNAFRPLTVKELMRAFNDARDDSS 120

Query: 116 VGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGY 175
           +GVIILTGKGT+AFCSGGDQALR  DGY D+++FGRLNVLDLQVQIRRLPKPVIAMVAGY
Sbjct: 121 IGVIILTGKGTKAFCSGGDQALRDSDGYVDFDSFGRLNVLDLQVQIRRLPKPVIAMVAGY 180

Query: 176 AVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF 235
           AVGGGHVLHMVCD+TIAA+NAIFGQTGPKVGSFDAGYGSSIMSRLVGPK+AREMWFL+RF
Sbjct: 181 AVGGGHVLHMVCDITIAAENAIFGQTGPKVGSFDAGYGSSIMSRLVGPKRAREMWFLSRF 240

Query: 236 YTAEEAEKMGLVNTVVPVS 254
           YTA+EA+KMGLVNTVVP++
Sbjct: 241 YTADEADKMGLVNTVVPLA 259

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
TAIR|locus:2036626	337	ECHID "enoyl-CoA hydratase/iso	0.929	0.741	0.763	8.8e-102
UNIPROTKB|P0ABU0	285	menB [Escherichia coli K-12 (t	0.724	0.684	0.666	1.8e-64
TIGR_CMR|BA_5109	272	BA_5109 "naphthoate synthase"	0.684	0.676	0.688	7.6e-64
UNIPROTKB|P23966	271	menB "1,4-Dihydroxy-2-naphthoy	0.684	0.678	0.677	2e-63
UNIPROTKB|Q9KQM5	296	VC_1973 "Naphthoate synthase"	0.721	0.655	0.67	5.4e-63
TIGR_CMR|VC_1973	296	VC_1973 "naphthoate synthase"	0.721	0.655	0.67	5.4e-63
TIGR_CMR|SO_4739	300	SO_4739 "naphthoate synthase"	0.702	0.63	0.509	1e-45
UNIPROTKB|O06414	314	menB "1,4-Dihydroxy-2-naphthoy	0.468	0.401	0.525	1e-29
UNIPROTKB|A0QRD3	309	menB "1,4-Dihydroxy-2-naphthoy	0.472	0.411	0.492	1.7e-27
TIGR_CMR|GSU_1377	260	GSU_1377 "3-hydroxybutyryl-CoA	0.646	0.669	0.411	1.1e-25

TAIR|locus:2036626 ECHID "enoyl-CoA hydratase/isomerase D" [Arabidopsis thaliana (taxid:3702)]

 Score = 1009 (360.2 bits), Expect = 8.8e-102, P = 8.8e-102
 Identities = 194/254 (76%), Positives = 222/254 (87%)

Query:     4 QIDSARRRMTAVANHLVPVISSDSNSGFIGLNNAS-MNDSYHRIHGEVPSHDVVWR---I 59
             ++ SA RR++ V NHL+P+  S + +  + L +AS M+D +H++HGEVP+H+VVW+    
Sbjct:     6 ELGSASRRLSVVTNHLIPIGFSPARADSVELCSASSMDDRFHKVHGEVPTHEVVWKKTDF 65

Query:    60 ACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVI 119
               +    EF DIIYEKA+ EGIAKITINRP+RRNAFRP TVKEL+RAFNDARDDSSVGVI
Sbjct:    66 FGEGDNKEFVDIIYEKALDEGIAKITINRPERRNAFRPQTVKELMRAFNDARDDSSVGVI 125

Query:   120 ILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 179
             ILTGKGT+AFCSGGDQALRT+DGYAD  + GRLNVLDLQVQIRRLPKPVIAMVAGYAVGG
Sbjct:   126 ILTGKGTKAFCSGGDQALRTQDGYADPNDVGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 185

Query:   180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE 239
             GH+LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWF+ RFYTA 
Sbjct:   186 GHILHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFMTRFYTAS 245

Query:   240 EAEKMGLVNTVVPV 253
             EAEKMGL+NTVVP+
Sbjct:   246 EAEKMGLINTVVPL 259

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0008935 "1,4-dihydroxy-2-naphthoyl-CoA synthase activity" evidence=IEA;ISS

GO:0009234 "menaquinone biosynthetic process" evidence=IEA

GO:0042371 "vitamin K biosynthetic process" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

UNIPROTKB|P0ABU0 menB [Escherichia coli K-12 (taxid:83333)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 134/201 (66%), Positives = 155/201 (77%)

Query:    55 VVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDS 114
             V W   C E    F DI YEK+  +GIAKITINRP  RNAFRP TVKE+I+A  DAR D 
Sbjct:    13 VEWH-DCSEG---FEDIRYEKST-DGIAKITINRPQVRNAFRPLTVKEMIQALADARYDD 67

Query:   115 SVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173
             ++GVIILTG G +AFCSGGDQ +R    GY D      LNVLD Q QIR  PKPV+AMVA
Sbjct:    68 NIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVA 127

Query:   174 GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLA 233
             GY++GGGHVLHM+CDLTIAADNAIFGQTGPKVGSFD G+G+S M+R+VG KKARE+WFL 
Sbjct:   128 GYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLC 187

Query:   234 RFYTAEEAEKMGLVNTVVPVS 254
             R Y A++A  MGLVNTVVP++
Sbjct:   188 RQYDAKQALDMGLVNTVVPLA 208

GO:0008935 "1,4-dihydroxy-2-naphthoyl-CoA synthase activity" evidence=IEA;IDA

GO:0071890 "bicarbonate binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009234 "menaquinone biosynthetic process" evidence=IEA;IMP

TIGR_CMR|BA_5109 BA_5109 "naphthoate synthase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 128/186 (68%), Positives = 149/186 (80%)

Query:    68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
             + DIIY  +   GIAKI+INRP+  NAFRP TV ELI AF  ARDD++VGVIILTG+G  
Sbjct:    11 YEDIIY--STYNGIAKISINRPEVHNAFRPKTVMELIDAFAHARDDANVGVIILTGEGGR 68

Query:   128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
             AFCSGGDQ +R   GY   +   RLNVLDLQ  IR +PKPVIAMVAGYA+GGGHVLH+VC
Sbjct:    69 AFCSGGDQKVRGHGGYVGDDQIPRLNVLDLQRLIRAIPKPVIAMVAGYAIGGGHVLHIVC 128

Query:   188 DLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLV 247
             DLTIAADNA+FGQTGPKVGSFD GYG+  ++R+VG KKARE+W+L R Y A+EA  MGLV
Sbjct:   129 DLTIAADNAVFGQTGPKVGSFDGGYGAGYLARMVGHKKAREIWYLCRQYNAQEALDMGLV 188

Query:   248 NTVVPV 253
             NTVVP+
Sbjct:   189 NTVVPL 194

GO:0008935 "1,4-dihydroxy-2-naphthoyl-CoA synthase activity" evidence=ISS

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

UNIPROTKB|P23966 menB "1,4-Dihydroxy-2-naphthoyl-CoA synthase" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 126/186 (67%), Positives = 148/186 (79%)

Query:    68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
             + +I+YE     GIAKITINRP+  NAF P TV E+I AF DARDD +VGVI+L G G +
Sbjct:    10 YDEILYETY--NGIAKITINRPEVHNAFTPKTVAEMIDAFADARDDQNVGVIVLAGAGDK 67

Query:   128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
             AFCSGGDQ +R   GY   +   RLNVLDLQ  IR +PKPV+AMV+GYA+GGGHVLH+VC
Sbjct:    68 AFCSGGDQKVRGHGGYVGDDQIPRLNVLDLQRLIRVIPKPVVAMVSGYAIGGGHVLHIVC 127

Query:   188 DLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLV 247
             DLTIAADNAIFGQTGPKVGSFDAGYGS  ++R+VG KKARE+W+L R Y A+EA  MGLV
Sbjct:   128 DLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLV 187

Query:   248 NTVVPV 253
             NTVVP+
Sbjct:   188 NTVVPL 193

GO:0008935 "1,4-dihydroxy-2-naphthoyl-CoA synthase activity" evidence=IDA

GO:0009234 "menaquinone biosynthetic process" evidence=IGC

GO:0071890 "bicarbonate binding" evidence=IDA

UNIPROTKB|Q9KQM5 VC_1973 "Naphthoate synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 134/200 (67%), Positives = 153/200 (76%)

Query:    55 VVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDS 114
             V+W+   D +G ++ DI Y K+  +GIAKITI RP  RNAFRP TVKE+I A  DAR D 
Sbjct:    24 VIWQ---DCTG-DYQDIHYHKS-DDGIAKITIARPQVRNAFRPLTVKEMIHALADARYDD 78

Query:   115 SVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173
              VGVIILTG G +AFCSGGDQ +R    GY D      LNVLD Q QIR  PKPVIA VA
Sbjct:    79 KVGVIILTGLGEDAFCSGGDQKIRGDYGGYRDDSGTHHLNVLDFQRQIRTCPKPVIAAVA 138

Query:   174 GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLA 233
             G+AVGGGHVLHM+CDLTIAA+NA FGQTGPKVGSFD G+G+S M+R+VG KKARE+WFL 
Sbjct:   139 GWAVGGGHVLHMMCDLTIAAENAQFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLC 198

Query:   234 RFYTAEEAEKMGLVNTVVPV 253
             RFY A+EA  MGLVNTVVPV
Sbjct:   199 RFYNAQEALDMGLVNTVVPV 218

GO:0008935 "1,4-dihydroxy-2-naphthoyl-CoA synthase activity" evidence=ISS

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

TIGR_CMR|VC_1973 VC_1973 "naphthoate synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 134/200 (67%), Positives = 153/200 (76%)

Query:    55 VVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDS 114
             V+W+   D +G ++ DI Y K+  +GIAKITI RP  RNAFRP TVKE+I A  DAR D 
Sbjct:    24 VIWQ---DCTG-DYQDIHYHKS-DDGIAKITIARPQVRNAFRPLTVKEMIHALADARYDD 78

Query:   115 SVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173
              VGVIILTG G +AFCSGGDQ +R    GY D      LNVLD Q QIR  PKPVIA VA
Sbjct:    79 KVGVIILTGLGEDAFCSGGDQKIRGDYGGYRDDSGTHHLNVLDFQRQIRTCPKPVIAAVA 138

Query:   174 GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLA 233
             G+AVGGGHVLHM+CDLTIAA+NA FGQTGPKVGSFD G+G+S M+R+VG KKARE+WFL 
Sbjct:   139 GWAVGGGHVLHMMCDLTIAAENAQFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLC 198

Query:   234 RFYTAEEAEKMGLVNTVVPV 253
             RFY A+EA  MGLVNTVVPV
Sbjct:   199 RFYNAQEALDMGLVNTVVPV 218

GO:0008935 "1,4-dihydroxy-2-naphthoyl-CoA synthase activity" evidence=ISS

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

TIGR_CMR|SO_4739 SO_4739 "naphthoate synthase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 104/204 (50%), Positives = 136/204 (66%)

Query:    64 SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
             +G  FTDI Y +A   G  +I INRPD  NAFRP TV EL  A + AR  S VG  +LTG
Sbjct:    18 NGFNFTDITYHRAKAHGTVRIAINRPDCLNAFRPKTVDELYIALDHARQWSDVGCALLTG 77

Query:   124 KGTEA-----FCSGGDQALRTRDGY---------ADYENFGRLNVLDLQVQIRRLPKPVI 169
              G  A     F SGGDQ +R +DGY         AD    GRL++L++Q  IR +PK VI
Sbjct:    78 NGPSAKGQYSFSSGGDQRIRGKDGYKYEGAEEGKADLARMGRLHILEVQRLIRFMPKVVI 137

Query:   170 AMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228
             A+V G+AVGGGH LH+VCDLT+A+ ++AIF QT P V SFD+GYGS+ +++++G K+ARE
Sbjct:   138 AVVPGWAVGGGHSLHVVCDLTLASKEHAIFKQTDPDVASFDSGYGSAYLAKMIGQKRARE 197

Query:   229 MWFLARFYTAEEAEKMGLVNTVVP 252
             ++F    Y+A+EA  MG+VN  VP
Sbjct:   198 IFFCGFNYSADEAFAMGMVNKSVP 221

GO:0008935 "1,4-dihydroxy-2-naphthoyl-CoA synthase activity" evidence=ISS

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

UNIPROTKB|O06414 menB "1,4-Dihydroxy-2-naphthoyl-CoA synthase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 72/137 (52%), Positives = 91/137 (66%)

Query:   125 GTEAFCSGGDQALRTRDGY----------ADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174
             G  AFCSGGDQ +R R GY           D    GRL++L++Q  IR +PK VI +V G
Sbjct:    97 GGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNG 156

Query:   175 YAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLA 233
             +A GGGH LH+VCDLT+A+ + A F QT   VGSFD GYGS+ ++R VG K ARE++FL 
Sbjct:   157 WAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLG 216

Query:   234 RFYTAEEAEKMGLVNTV 250
             R YTAE+  +MG VN V
Sbjct:   217 RTYTAEQMHQMGAVNAV 233

GO:0005886 "plasma membrane" evidence=IDA

GO:0008935 "1,4-dihydroxy-2-naphthoyl-CoA synthase activity" evidence=IDA

GO:0009234 "menaquinone biosynthetic process" evidence=IDA

GO:0034214 "protein hexamerization" evidence=IDA

GO:0051260 "protein homooligomerization" evidence=IPI

UNIPROTKB|A0QRD3 menB "1,4-Dihydroxy-2-naphthoyl-CoA synthase" [Mycobacterium smegmatis str. MC2 155 (taxid:246196)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 68/138 (49%), Positives = 89/138 (64%)

Query:   125 GTEAFCSGGDQALRTRDGY----------ADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174
             G  AFCSGGDQ +R R GY           D    GRL++L++Q  IR +PK VI +V G
Sbjct:    92 GGWAFCSGGDQRIRGRTGYQYASGETAETVDPARAGRLHILEVQRLIRFMPKVVICLVNG 151

Query:   175 YAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLA 233
             +A GGGH LH+ CDLT+A+ ++A F QT   VGSFD G+GS+ ++R  G K ARE++FL 
Sbjct:   152 WAAGGGHSLHVTCDLTLASREHARFKQTDADVGSFDGGFGSAYLARQTGQKFAREIFFLG 211

Query:   234 RFYTAEEAEKMGLVNTVV 251
             R Y A+   +MG VN VV
Sbjct:   212 RAYDAQTMHQMGAVNEVV 229

GO:0008935 "1,4-dihydroxy-2-naphthoyl-CoA synthase activity" evidence=ISS;IDA

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

TIGR_CMR|GSU_1377 GSU_1377 "3-hydroxybutyryl-CoA dehydratase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 72/175 (41%), Positives = 89/175 (50%)

Query:    77 VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
             + EGIA ITINRP   NA  P T+ EL  A         V   ILTG GT+AF +G D A
Sbjct:    10 ISEGIAAITINRPSAMNAMTPATLDELAEAVRRVNGAPEVRAAILTGAGTKAFMAGADIA 69

Query:   137 LRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
                    A   +  R     +   I R PK  IA V GYA+GGG  L M CD+ +A++NA
Sbjct:    70 AMRDMTPAQARDLAR-QAHQIYADIERSPKTFIAAVNGYALGGGCELAMACDIRLASENA 128

Query:   197 IFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
              FGQ    +G      G+  + RLVG  +A EM        A EA ++GLVN VV
Sbjct:   129 KFGQPEINIGIIPGFGGTQRLPRLVGKGRALEMILTGEMIDAREAHRIGLVNRVV 183

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

GO:0019605 "butyrate metabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q49WG8	MENB_STAS1	4, ., 1, ., 3, ., 3, 6	0.6510	0.7063	0.6985	yes	no
Q8NXA0	MENB_STAAW	4, ., 1, ., 3, ., 3, 6	0.6666	0.7063	0.6959	yes	no
Q6GAG7	MENB_STAAS	4, ., 1, ., 3, ., 3, 6	0.6666	0.7063	0.6959	yes	no
Q9CLV5	MENB_PASMU	4, ., 1, ., 3, ., 3, 6	0.6504	0.7546	0.7122	yes	no
Q7A6A9	MENB_STAAN	4, ., 1, ., 3, ., 3, 6	0.6666	0.7063	0.6959	yes	no
Q8CPQ4	MENB_STAES	4, ., 1, ., 3, ., 3, 6	0.6702	0.6914	0.6838	yes	no
Q6GI37	MENB_STAAR	4, ., 1, ., 3, ., 3, 6	0.6666	0.7063	0.6959	yes	no
Q7CQ56	MENB_SALTY	4, ., 1, ., 3, ., 3, 6	0.6380	0.7397	0.6982	yes	no
Q5HH38	MENB_STAAC	4, ., 1, ., 3, ., 3, 6	0.6666	0.7063	0.6959	yes	no
Q99V48	MENB_STAAM	4, ., 1, ., 3, ., 3, 6	0.6666	0.7063	0.6959	yes	no
Q8GYN9	MENB_ARATH	4, ., 1, ., 3, ., 3, 6	0.7607	0.9330	0.7448	yes	no
Q5HQC3	MENB_STAEQ	4, ., 1, ., 3, ., 3, 6	0.6614	0.7063	0.6985	yes	no
P0ABU1	MENB_ECOL6	4, ., 1, ., 3, ., 3, 6	0.6428	0.7397	0.6982	yes	no
P44960	MENB_HAEIN	4, ., 1, ., 3, ., 3, 6	0.6808	0.6914	0.6526	yes	no
P23966	MENB_BACSU	4, ., 1, ., 3, ., 3, 6	0.6737	0.6877	0.6826	yes	no
Q4L549	MENB_STAHJ	4, ., 1, ., 3, ., 3, 6	0.6614	0.7063	0.6985	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.1.3.36	0.914
3rd Layer	4.1.3	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	269
PLN02921	327	PLN02921, PLN02921, naphthoate synthase	1e-170
PRK07396	273	PRK07396, PRK07396, dihydroxynaphthoic acid synthe	1e-133
COG0447	282	COG0447, MenB, Dihydroxynaphthoic acid synthase [C	1e-115
TIGR01929	259	TIGR01929, menB, naphthoate synthase (dihydroxynap	1e-104
PRK08321	302	PRK08321, PRK08321, naphthoate synthase; Validated	2e-85
TIGR03210	256	TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd	5e-71
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	3e-61
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	1e-60
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	5e-48
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	3e-43
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	2e-38
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	3e-36
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	2e-35
PRK05862	257	PRK05862, PRK05862, enoyl-CoA hydratase; Provision	2e-34
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	4e-34
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	2e-32
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	5e-32
PRK06210	272	PRK06210, PRK06210, enoyl-CoA hydratase; Provision	1e-31
PRK08290	288	PRK08290, PRK08290, enoyl-CoA hydratase; Provision	4e-31
PRK08139	266	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	9e-31
PRK07468	262	PRK07468, PRK07468, enoyl-CoA hydratase; Provision	2e-30
PRK06144	262	PRK06144, PRK06144, enoyl-CoA hydratase; Provision	2e-30
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	4e-30
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	5e-29
PRK08260	296	PRK08260, PRK08260, enoyl-CoA hydratase; Provision	7e-29
PRK09120	275	PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata	7e-29
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	1e-27
TIGR03200	360	TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-car	2e-27
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	3e-27
PRK03580	261	PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr	8e-27
PRK05980	260	PRK05980, PRK05980, enoyl-CoA hydratase; Provision	1e-26
PRK07110	249	PRK07110, PRK07110, polyketide biosynthesis enoyl-	2e-26
PRK08258	277	PRK08258, PRK08258, enoyl-CoA hydratase; Provision	3e-26
PRK05870	249	PRK05870, PRK05870, enoyl-CoA hydratase; Provision	4e-26
PRK07511	260	PRK07511, PRK07511, enoyl-CoA hydratase; Provision	9e-26
PRK05864	276	PRK05864, PRK05864, enoyl-CoA hydratase; Provision	3e-25
PRK06142	272	PRK06142, PRK06142, enoyl-CoA hydratase; Provision	9e-24
PRK09674	255	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase;	1e-23
PRK08259	254	PRK08259, PRK08259, enoyl-CoA hydratase; Provision	2e-23
PLN02600	251	PLN02600, PLN02600, enoyl-CoA hydratase	4e-23
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	6e-23
PRK08272	302	PRK08272, PRK08272, enoyl-CoA hydratase; Provision	1e-22
PRK11423	261	PRK11423, PRK11423, methylmalonyl-CoA decarboxylas	2e-22
PRK05869	222	PRK05869, PRK05869, enoyl-CoA hydratase; Validated	2e-22
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	4e-22
PRK07799	263	PRK07799, PRK07799, enoyl-CoA hydratase; Provision	3e-21
PRK08252	254	PRK08252, PRK08252, enoyl-CoA hydratase; Provision	6e-21
PRK05981	266	PRK05981, PRK05981, enoyl-CoA hydratase; Provision	1e-20
PRK07854	243	PRK07854, PRK07854, enoyl-CoA hydratase; Provision	6e-20
PRK08150	255	PRK08150, PRK08150, enoyl-CoA hydratase; Provision	2e-19
PRK07327	268	PRK07327, PRK07327, enoyl-CoA hydratase; Provision	2e-19
PRK07509	262	PRK07509, PRK07509, enoyl-CoA hydratase; Provision	9e-19
PRK06495	257	PRK06495, PRK06495, enoyl-CoA hydratase; Provision	2e-18
PRK07938	249	PRK07938, PRK07938, enoyl-CoA hydratase; Provision	4e-18
PRK05674	265	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr	8e-18
PRK07260	255	PRK07260, PRK07260, enoyl-CoA hydratase; Provision	8e-18
PRK06143	256	PRK06143, PRK06143, enoyl-CoA hydratase; Provision	9e-18
PRK07827	260	PRK07827, PRK07827, enoyl-CoA hydratase; Provision	5e-17
PRK06563	255	PRK06563, PRK06563, enoyl-CoA hydratase; Provision	2e-16
PRK06072	248	PRK06072, PRK06072, enoyl-CoA hydratase; Provision	1e-15
PRK07659	260	PRK07659, PRK07659, enoyl-CoA hydratase; Provision	1e-15
PRK12478	298	PRK12478, PRK12478, enoyl-CoA hydratase; Provision	2e-15
PRK06023	251	PRK06023, PRK06023, enoyl-CoA hydratase; Provision	5e-15
PLN02664	275	PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d	6e-15
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	7e-15
PRK09076	258	PRK09076, PRK09076, enoyl-CoA hydratase; Provision	2e-13
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	5e-13
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	5e-13
PRK08788	287	PRK08788, PRK08788, enoyl-CoA hydratase; Validated	4e-11
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	7e-11
PLN02988	381	PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol	2e-10
PRK05617	342	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol	3e-10
PRK07112	255	PRK07112, PRK07112, polyketide biosynthesis enoyl-	6e-09
PLN02874	379	PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol	2e-08
PLN02157	401	PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol	7e-08
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	2e-07
PLN02851	407	PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol	1e-06
TIGR03189	251	TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecar	3e-06
PLN03214	278	PLN03214, PLN03214, probable enoyl-CoA hydratase/i	2e-05

>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase

 Score =  471 bits (1215), Expect = e-170
 Identities = 194/248 (78%), Positives = 213/248 (85%)

Query: 6   DSARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESG 65
           D+ARRR+  VANHLVP  +  S +     +  +  DSY R+HG+V S  VVWR   D SG
Sbjct: 2   DAARRRLARVANHLVPSANPASMAAARSSSATAPPDSYRRVHGDVSSEPVVWRKVPDGSG 61

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
            EFTDIIYEKAVGEGIAKITINRP+RRNAFRP TVKEL RAFNDARDDSSVGVIILTGKG
Sbjct: 62  KEFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKG 121

Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
           T+AFCSGGDQA+R +DGY   ++ GRLNVLDLQ+QIRRLPKPVIAMVAGYAVGGGH+LHM
Sbjct: 122 TKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHM 181

Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMG 245
           VCDLTIAADNA+FGQTGPKVGSFDAGYGSSIM+RLVG KKAREMWFLARFYTA EA KMG
Sbjct: 182 VCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMG 241

Query: 246 LVNTVVPV 253
           LVNTVVP+
Sbjct: 242 LVNTVVPL 249

Length = 327

>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated

 Score =  376 bits (969), Expect = e-133
 Identities = 135/187 (72%), Positives = 155/187 (82%), Gaps = 2/187 (1%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
           E+ DI+Y+ A  +GIAKITINRP+ RNAFRP TVKE+I AF DARDD ++GVIILTG G 
Sbjct: 11  EYEDILYKSA--DGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGD 68

Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
           +AFCSGGDQ +R   GY D +   RLNVLDLQ  IR  PKPVIAMVAGYA+GGGHVLH+V
Sbjct: 69  KAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLV 128

Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
           CDLTIAADNAIFGQTGPKVGSFD GYG+S ++R+VG KKARE+WFL R Y A+EA  MGL
Sbjct: 129 CDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGL 188

Query: 247 VNTVVPV 253
           VNTVVP+
Sbjct: 189 VNTVVPL 195

Length = 273

>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

 Score =  331 bits (850), Expect = e-115
 Identities = 137/190 (72%), Positives = 153/190 (80%), Gaps = 4/190 (2%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK-- 124
            + DI YEK+V  GIAKITINRP+ RNAFRP TV E+I AF DARDD +VGVI+LTG   
Sbjct: 16  GYEDITYEKSVD-GIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGD 74

Query: 125 GTEAFCSGGDQALRTRD-GYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
           G +AFCSGGDQ +R    GY D +   RLNVLDLQ  IR +PKPVIAMVAGYA+GGGHVL
Sbjct: 75  GDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVL 134

Query: 184 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEK 243
           H+VCDLTIAADNAIFGQTGPKVGSFD GYGSS ++R+VG KKARE+WFL R Y AEEA  
Sbjct: 135 HVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALD 194

Query: 244 MGLVNTVVPV 253
           MGLVNTVVP 
Sbjct: 195 MGLVNTVVPH 204

Length = 282

>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase)

 Score =  303 bits (778), Expect = e-104
 Identities = 131/187 (70%), Positives = 152/187 (81%), Gaps = 1/187 (0%)

Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           F DI YEK+  +GIAKITINRP  RNAFRP TVKE+I+A +DAR+D  +GV+ILTG G +
Sbjct: 1   FEDIRYEKST-DGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDK 59

Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
           AFCSGGDQ +R   GY D     RLNVLD+Q QIR  PKPVIAMV GYA+GGGHVLHM+C
Sbjct: 60  AFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHMMC 119

Query: 188 DLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLV 247
           DLTIAA+NA FGQTGPKVGSFD GYGSS M+R+VG KKARE+WFL R Y A++A  MGLV
Sbjct: 120 DLTIAAENARFGQTGPKVGSFDGGYGSSYMARIVGQKKAREIWFLCRQYDAKQALDMGLV 179

Query: 248 NTVVPVS 254
           NTVVP++
Sbjct: 180 NTVVPLA 186

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259

>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated

 Score =  256 bits (657), Expect = 2e-85
 Identities = 109/206 (52%), Positives = 136/206 (66%), Gaps = 17/206 (8%)

Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
            G +FTDI Y +AV +G  +I  +RP+ RNAFRPHTV EL RA + AR    VG ++LTG
Sbjct: 18  PGFDFTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTG 77

Query: 124 KGTE------AFCSGGDQALRTRDGY----------ADYENFGRLNVLDLQVQIRRLPKP 167
            G        AFCSGGDQ +R RDGY           D    GRL++L++Q  IR +PK 
Sbjct: 78  NGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKV 137

Query: 168 VIAMVAGYAVGGGHVLHMVCDLTIA-ADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226
           VIA+V G+A GGGH LH+VCDLT+A  ++A F QT   VGSFD GYGS+ ++R VG K A
Sbjct: 138 VIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQKFA 197

Query: 227 REMWFLARFYTAEEAEKMGLVNTVVP 252
           RE++FL R Y+AEEA  MG VN VVP
Sbjct: 198 REIFFLGRTYSAEEAHDMGAVNAVVP 223

Length = 302

>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase

 Score =  218 bits (557), Expect = 5e-71
 Identities = 105/185 (56%), Positives = 130/185 (70%), Gaps = 4/185 (2%)

Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           + DI+YEK    GIA I INRP + NAFR  T  ELI A  DA  D  +GVI+L G G +
Sbjct: 1   YEDILYEKR--NGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDK 58

Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
           AFC+GGDQ+  T DG  D      L + +L   IR +PKPVIA V GYA+GGG+VL  +C
Sbjct: 59  AFCTGGDQS--THDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTIC 116

Query: 188 DLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLV 247
           DLTIA++ A FGQ GPKVGS D GYG+++++R+VG KKARE+W+L R YTA+EA  MGLV
Sbjct: 117 DLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLV 176

Query: 248 NTVVP 252
           N VVP
Sbjct: 177 NAVVP 181

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score =  193 bits (492), Expect = 3e-61
 Identities = 73/183 (39%), Positives = 94/183 (51%), Gaps = 2/183 (1%)

Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           +  G+A I ++RP+  NA     + ELI+A      D SV  I+LTG    AF +G D  
Sbjct: 4   LEAGVAVIKLDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTGGP-GAFSAGADIK 62

Query: 137 LRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
               +  A    F  L   DL  ++  LPKPVIA V GYA+GGG  L + CD  IAADNA
Sbjct: 63  EMAAEPLAQQAQF-SLEAQDLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNA 121

Query: 197 IFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLF 256
            FG    K+G      G+  + R++G   A EM    R   A+EA KMGLV+ VVP    
Sbjct: 122 KFGLPEVKLGIIPGAGGTQRLPRIIGVSAALEMLLTGRRIRAQEALKMGLVDKVVPEEQL 181

Query: 257 VAY 259
           V  
Sbjct: 182 VEE 184

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score =  189 bits (483), Expect = 1e-60
 Identities = 77/194 (39%), Positives = 112/194 (57%), Gaps = 4/194 (2%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           ++ E+    G+A IT+NRP++RNA     + EL  A ++A  D  V V++LTG G +AFC
Sbjct: 1   VLVER--DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAG-KAFC 57

Query: 131 SGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL 189
           +G D + L       +        + +L   + RLPKPVIA V G A+GGG  L + CD+
Sbjct: 58  AGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDI 117

Query: 190 TIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNT 249
            IAA++A FG    K+G    G G+  + RLVGP +ARE+    R  +AEEA ++GLV+ 
Sbjct: 118 RIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDE 177

Query: 250 VVPVSLFVAYLMSL 263
           VVP    +A  + L
Sbjct: 178 VVPDEELLAAALEL 191

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score =  159 bits (404), Expect = 5e-48
 Identities = 71/188 (37%), Positives = 105/188 (55%), Gaps = 5/188 (2%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
           T +  I+ E    +GIA IT+NRP++ NA     + EL  A ++A  D  V V++LTG G
Sbjct: 2   TTYETILVE--REDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAG 59

Query: 126 TEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
             AF +G D + L + +     EN  +     L+  +  LPKPVIA V GYA+GGG  L 
Sbjct: 60  K-AFSAGADLKELLSPEDGNAAENLMQPGQDLLR-ALADLPKPVIAAVNGYALGGGLELA 117

Query: 185 MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKM 244
           + CD+ IAA++A FG     +G      G+  + RL+G  +A+E+       +A EA ++
Sbjct: 118 LACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALEL 177

Query: 245 GLVNTVVP 252
           GLV+ VVP
Sbjct: 178 GLVDEVVP 185

Length = 257

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score =  147 bits (373), Expect = 3e-43
 Identities = 74/192 (38%), Positives = 102/192 (53%), Gaps = 17/192 (8%)

Query: 69  TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEA 128
           TD++ E    +G+  ITINRPD++NA      + L  A   A  D +V V++LTG G  A
Sbjct: 5   TDLLVELE--DGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAG-RA 61

Query: 129 FCSGGDQALRTRDGYADYENFGRLNVLDLQV-----QIRRLPKPVIAMVAGYAVGGGHVL 183
           F +GGD            +   +       V      I  LPKPV+A V G AVG G  L
Sbjct: 62  FSAGGDIK-------DFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSL 114

Query: 184 HMVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
            + CDL  A+++A F     K+G   DAG GS+++ RL+G  +A EM  L    +AEEA 
Sbjct: 115 ALACDLVYASESAKFSLPFAKLGLCPDAG-GSALLPRLIGRARAAEMLLLGEPLSAEEAL 173

Query: 243 KMGLVNTVVPVS 254
           ++GLVN VVP +
Sbjct: 174 RIGLVNRVVPAA 185

Length = 259

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score =  134 bits (340), Expect = 2e-38
 Identities = 76/189 (40%), Positives = 109/189 (57%), Gaps = 11/189 (5%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
           E  ++I EK     IA +TINRP   NA    T+KEL    +D  +D +V  +ILTG G 
Sbjct: 2   ELKNVILEKE--GHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGE 59

Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQV--QIRRLPKPVIAMVAGYAVGGGHVLH 184
           +AF +G D +        +   FG   +L  +V  ++  L KPVIA + G+A+GGG  L 
Sbjct: 60  KAFVAGADISEMKDLNEEEGRKFG---LLGNKVFRKLENLDKPVIAAINGFALGGGCELS 116

Query: 185 MVCDLTIAADNAIFGQTGPKVG-SFDAGY-GSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
           M CD+ IA++ A FGQ  P+VG     G+ G+  ++R+VGP KA+E+ +      AEEA 
Sbjct: 117 MACDIRIASEKAKFGQ--PEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEAL 174

Query: 243 KMGLVNTVV 251
           ++GLVN VV
Sbjct: 175 RIGLVNKVV 183

Length = 260

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score =  129 bits (326), Expect = 3e-36
 Identities = 70/179 (39%), Positives = 97/179 (54%), Gaps = 4/179 (2%)

Query: 76  AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD- 134
                +A +T+NRPD RNAF    + EL  AF     D SV  ++L G G +AFC+G D 
Sbjct: 9   EQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAG-KAFCAGADL 67

Query: 135 QALRTRDGYADYENFGRLNVL-DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
             ++   GY+D EN      L D+   I R PKPVIA V G A  GG  L   CD+ +AA
Sbjct: 68  NWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAA 127

Query: 194 DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           D+A+F  +  ++G   A   S  + R +G + AR  +  A  + A EA ++GLV+ VVP
Sbjct: 128 DHAVFCLSEVRLGLIPATI-SPYVIRAMGERAARRYFLTAERFDAAEALRLGLVHEVVP 185

Length = 262

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score =  126 bits (319), Expect = 2e-35
 Identities = 66/193 (34%), Positives = 103/193 (53%), Gaps = 11/193 (5%)

Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
             + KIT+NRP   NA     ++EL        ++++V V+ILTG G +AFC+G D  L+
Sbjct: 12  PHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGAD--LK 69

Query: 139 TRDGYADYENFGRLNVLDLQ---VQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN 195
            R G  + +   R  V  ++     + +LP+PVIA + G A+GGG  L + CD  IAA++
Sbjct: 70  ERAGMNEEQ--VRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAES 127

Query: 196 AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSL 255
           A  G T   +       G+  + RL+G  +A+E+ +  R  +A+EA+++GLV  VVP  L
Sbjct: 128 ASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHL 187

Query: 256 FVAYLMSLTKCQA 268
               L       A
Sbjct: 188 ----LEEKAIEIA 196

Length = 260

>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional

 Score =  124 bits (313), Expect = 2e-34
 Identities = 71/175 (40%), Positives = 92/175 (52%), Gaps = 16/175 (9%)

Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD----QALRT 139
           IT+NRP   NA     + EL  A      D  +G I++TG   +AF +G D      L  
Sbjct: 17  ITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGS-EKAFAAGADIKEMADLSF 75

Query: 140 RDGY-ADY-ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAI 197
            D Y  DY  N+ +         + R+ KPVIA VAGYA+GGG  L M+CD+ IAAD A 
Sbjct: 76  MDVYKGDYITNWEK---------VARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAK 126

Query: 198 FGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           FGQ   K+G      GS  ++R VG  KA ++    R   A EAE+ GLV+ VVP
Sbjct: 127 FGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVP 181

Length = 257

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score =  123 bits (312), Expect = 4e-34
 Identities = 66/179 (36%), Positives = 86/179 (48%), Gaps = 14/179 (7%)

Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD---Q 135
             +  +T+NRP+  NA       EL   F+D   D    V I+TG G +AF +G D   Q
Sbjct: 12  GHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQ 71

Query: 136 ALRTRDGYADYENFGRLNVLDLQVQIRR--LPKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
           A   + G      FG L          R  L KP+IA V G A+GGG  L + CDL +AA
Sbjct: 72  AAGGKRG-WPESGFGGLT--------SRFDLDKPIIAAVNGVAMGGGFELALACDLIVAA 122

Query: 194 DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           +NA F    P+VG      G   + R +G K+A  M    R  TA E  ++G VN VVP
Sbjct: 123 ENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVVP 181

Length = 259

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score =  119 bits (300), Expect = 2e-32
 Identities = 65/199 (32%), Positives = 100/199 (50%), Gaps = 17/199 (8%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           ++ EK    G+ +IT N P R NA      + L +A   A DD ++ V++LTG G +AF 
Sbjct: 13  LLAEKT--GGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFV 70

Query: 131 SGGD-----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
           SG D     ++    +  A YE      V   Q  +    KP IA + GY +GGG  + +
Sbjct: 71  SGADISQFEESRSDAEAVAAYEQ----AVEAAQAALADYAKPTIACIRGYCIGGGMGIAL 126

Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL---VGPKKAREMWFLARFYTAEEAE 242
            CD+ IAA+++ FG    ++G    GYG   +  L   VGP  A+++++ AR + A EA 
Sbjct: 127 ACDIRIAAEDSRFGIPAARLG---LGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEAL 183

Query: 243 KMGLVNTVVPVSLFVAYLM 261
           ++GLV+ V         L 
Sbjct: 184 RIGLVHRVTAADDLETALA 202

Length = 269

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score =  118 bits (297), Expect = 5e-32
 Identities = 69/172 (40%), Positives = 89/172 (51%), Gaps = 5/172 (2%)

Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT 139
           GIA ITINRP   NA     + EL  AF    +D SV VIILTG G  AFCSG D     
Sbjct: 19  GIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSG-RAFCSGVDLTAAE 77

Query: 140 RDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG 199
                D +        D   Q+ R  KP+I  + G+A+  G  + + CD+ +A+  A F 
Sbjct: 78  EVFKGDVK----DVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFI 133

Query: 200 QTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
            T  K G F +   S  +SR++G  +ARE+   A   TAE AE+ GLVN VV
Sbjct: 134 DTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVV 185

Length = 265

>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional

 Score =  117 bits (295), Expect = 1e-31
 Identities = 76/200 (38%), Positives = 101/200 (50%), Gaps = 21/200 (10%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
            +  ++YE A   G+A IT+NRPDR NA+ P    E+  A + A  D +V VI+LTG G 
Sbjct: 3   AYDAVLYEVA-DSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAG- 60

Query: 127 EAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRR------------LPKPVIAMVA 173
             FC+G D   L+T D         R   +   V  RR            L KPVIA + 
Sbjct: 61  RGFCAGADMGELQTIDPSDG----RRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAIN 116

Query: 174 GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSS-IMSRLVGPKKAREMWFL 232
           G   G G    ++CD+  AAD A F     + G   A +G S I+ RLVG   A ++   
Sbjct: 117 GACAGIGLTHALMCDVRFAADGAKFTTAFARRGLI-AEHGISWILPRLVGHANALDLLLS 175

Query: 233 ARFYTAEEAEKMGLVNTVVP 252
           AR + AEEA ++GLVN VVP
Sbjct: 176 ARTFYAEEALRLGLVNRVVP 195

Length = 272

>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional

 Score =  116 bits (293), Expect = 4e-31
 Identities = 75/213 (35%), Positives = 105/213 (49%), Gaps = 36/213 (16%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
            E+  + YE  V   IA+IT+NRP+ RNA     + EL  AF  A  D +V VI+L G G
Sbjct: 1   MEYEYVRYE--VAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAG 58

Query: 126 TEAFCSGGD----QALRTRDGYAD------YENFGRLNV-----------LDLQVQIRRL 164
            + F +G D       R RD   D      ++   +  V           L +  + R L
Sbjct: 59  -KHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDL 117

Query: 165 PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF----GQTG-PKVGSFDAGYGSSIMSR 219
           PKP IA V G  + GG +L  VCDL +A+D+A F     + G P V  F   +       
Sbjct: 118 PKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGIPGVEYFAHPW------- 170

Query: 220 LVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
            +GP+KA+E+ F     TA+EA ++G+VN VVP
Sbjct: 171 ELGPRKAKELLFTGDRLTADEAHRLGMVNRVVP 203

Length = 288

>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated

 Score =  115 bits (289), Expect = 9e-31
 Identities = 67/180 (37%), Positives = 86/180 (47%), Gaps = 16/180 (8%)

Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD----Q 135
           G+A +T+NRP   NA     +  L  A +    D SV V++L   G +AFC+G D    +
Sbjct: 20  GVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAG-KAFCAGHDLKEMR 78

Query: 136 ALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN 195
           A R    +     F R +   +   I  LP+PVIA V G A   G  L   CDL +AAD 
Sbjct: 79  AARGLAYFRAL--FARCS--RVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADT 134

Query: 196 AIFGQTGPKVGSFDAGYGSSIM---SRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           A F   G  +G F     S+ M   SR V  K+A EM     F  A  A + GLVN VVP
Sbjct: 135 ARFAVPGVNIGLF----CSTPMVALSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVVP 190

Length = 266

>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional

 Score =  114 bits (287), Expect = 2e-30
 Identities = 67/177 (37%), Positives = 101/177 (57%), Gaps = 8/177 (4%)

Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD----Q 135
           G+A +T+NRP++ NA     + EL  A      D++V V++LTG G ++FC+GGD    +
Sbjct: 14  GVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAG-KSFCAGGDLGWMR 72

Query: 136 ALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN 195
           A  T D     E   RL ++ L+  +  LPKP+I  + G A GGG  L  VCD+ IA   
Sbjct: 73  AQMTADRATRIEEARRLAMM-LKA-LNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSG 130

Query: 196 AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           A FG T  ++G   A     +++R +G   AR ++  AR + AEEA ++GL++ VVP
Sbjct: 131 ARFGLTETRLGLIPATISPYVVAR-MGEANARRVFMSARLFDAEEAVRLGLLSRVVP 186

Length = 262

>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional

 Score =  113 bits (286), Expect = 2e-30
 Identities = 66/195 (33%), Positives = 93/195 (47%), Gaps = 17/195 (8%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
           T   +++ E  V  GIA+IT NRP  RNA      + L         D S+  ++L G G
Sbjct: 5   TSTDELLLE--VRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAG 62

Query: 126 TEAFCSGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
            +AF +G D    +A  T +    YE      VL     + +L  P IA +AG  VGGG 
Sbjct: 63  DKAFVAGTDIAQFRAFSTAEDAVAYERRID-RVLGA---LEQLRVPTIAAIAGACVGGGA 118

Query: 182 VLHMVCDLTIAADNAIFG----QTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT 237
            +   CDL IA  +A FG    +T   +G+  +    + +  L+G  + ++M F AR   
Sbjct: 119 AIAAACDLRIATPSARFGFPIART---LGNCLSMSNLARLVALLGAARVKDMLFTARLLE 175

Query: 238 AEEAEKMGLVNTVVP 252
           AEEA   GLVN VV 
Sbjct: 176 AEEALAAGLVNEVVE 190

Length = 262

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score =  113 bits (284), Expect = 4e-30
 Identities = 59/174 (33%), Positives = 81/174 (46%), Gaps = 4/174 (2%)

Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
           + +  +T+NRP+ RNA      + L  A  +A  D  V V++LTG    AFC+G D    
Sbjct: 12  DRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGAD-PAFCAGLDLKEL 70

Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
             DG A        N          + KPVI  + G AV GG  L + CD+ IA++ A F
Sbjct: 71  GGDGSAYGAQDALPNPS---PAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARF 127

Query: 199 GQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
             T  +VG       S  + + VG  +AR M     F  A +A + GLV  VVP
Sbjct: 128 ADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVP 181

Length = 258

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score =  110 bits (277), Expect = 5e-29
 Identities = 61/174 (35%), Positives = 88/174 (50%), Gaps = 4/174 (2%)

Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
           +G+A + +NRP+ RNA      ++L   F +  +D  +  I+LTG G + F +G D  ++
Sbjct: 16  DGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTG-GEKVFAAGAD--IK 72

Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
                   E + R +       I + PKPVIA V GYA+GGG  L M  D+ +A ++A F
Sbjct: 73  EFATAGAIEMYLR-HTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASF 131

Query: 199 GQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           GQ   KVG      G+  + R VG  KA  M        A EA  +GLV+ VV 
Sbjct: 132 GQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVE 185

Length = 261

>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional

 Score =  110 bits (278), Expect = 7e-29
 Identities = 72/213 (33%), Positives = 102/213 (47%), Gaps = 41/213 (19%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
            +  I Y+  V +GIA IT+NRPD+ NAF     +ELI AF+ A  D +V  +I+TG G 
Sbjct: 2   TYETIRYD--VADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAG- 58

Query: 127 EAFCSGGD---------------QALRTRDGYADY------ENFGRLNVLDLQVQIRRLP 165
            AFC+G D                     +  AD       +  GR+      ++I    
Sbjct: 59  RAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVT-----LRIFDSL 113

Query: 166 KPVIAMVAGYAVGGGHVLHMVCDLTIAADNA----IFGQTG--PKVGSFDAGYGSSIMSR 219
           KPVIA V G AVG G  + +  D+ +A+  A    +FG+ G  P+  S      S  + R
Sbjct: 114 KPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAAS------SWFLPR 167

Query: 220 LVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           LVG + A E  +  R + A+EA   GLV +V P
Sbjct: 168 LVGLQTALEWVYSGRVFDAQEALDGGLVRSVHP 200

Length = 296

>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated

 Score =  110 bits (276), Expect = 7e-29
 Identities = 68/187 (36%), Positives = 91/187 (48%), Gaps = 20/187 (10%)

Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           V +GIA +T+NRP++RNA  P   +E+I   +    D   GV++LTG G +A+ +G D  
Sbjct: 14  VEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAG-DAWSAGMDLK 72

Query: 137 LRTRDGYADYENFGRLNVLDLQVQIRR-----------LPKPVIAMVAGYAVGGGHVLHM 185
              R+  A  E         LQ +IRR             KP IAMV G+  GGG    +
Sbjct: 73  EYFRETDAQPE--------ILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLV 124

Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMG 245
            CDL IAAD A FG +    G    G  S  M+  VG + A         +T  +A +MG
Sbjct: 125 ACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMG 184

Query: 246 LVNTVVP 252
           LVN  VP
Sbjct: 185 LVNESVP 191

Length = 275

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score =  106 bits (267), Expect = 1e-27
 Identities = 67/195 (34%), Positives = 98/195 (50%), Gaps = 11/195 (5%)

Query: 76  AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQ 135
           A+  G+A +T+NRPD+ N+F     +EL  A +   DD     ++LTG G   FC+G D 
Sbjct: 9   AIEAGVATLTLNRPDKLNSFTREMHRELREALDQVEDDG-ARALLLTGAG-RGFCAGQDL 66

Query: 136 ALRTRDGYADYENFGRLNVLD-----LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
           A R         + G    ++     L  ++R LP PVIA V G A G G  L + CD+ 
Sbjct: 67  ADRDVTPGGAMPDLG--ESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIV 124

Query: 191 IAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNT 249
           +AA +A F Q   K+G   D+G G+  + RLVG  +A  +  L    +AE+AE+ GL+  
Sbjct: 125 LAARSASFIQAFVKIGLVPDSG-GTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLIWR 183

Query: 250 VVPVSLFVAYLMSLT 264
           VV  +        L 
Sbjct: 184 VVDDAALADEAQQLA 198

Length = 262

>gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

 Score =  108 bits (271), Expect = 2e-27
 Identities = 66/206 (32%), Positives = 101/206 (49%), Gaps = 16/206 (7%)

Query: 62  DESGTEFTDIIYEK--------AVGEGI--AKITINRPDRRNAFRPHTVKELIRAFNDAR 111
           +   T    ++YEK         V  G+  A I ++ P + N++    VK +I AF  A 
Sbjct: 9   EHPETVCPGVLYEKRPAKRPDGNVVPGLYNAWIILDNPKQYNSYTTDMVKAIILAFRRAS 68

Query: 112 DDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA----DYENFGRLNVLDLQVQIRRLPKP 167
            D  V  ++ T  G +AFC+GG+      + YA    +Y  + RL   D+   I    KP
Sbjct: 69  SDRDVVAVVFTAVGDKAFCTGGNTK-EYAEYYAGNPQEYRQYMRL-FNDMVSAILGCDKP 126

Query: 168 VIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227
           VI  V G  +GGG  + M  D TIA D A FGQ GPK GS   G  +  +  ++G ++A 
Sbjct: 127 VICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAM 186

Query: 228 EMWFLARFYTAEEAEKMGLVNTVVPV 253
               L   ++A +A+++G++  VVP 
Sbjct: 187 VSGTLCEPWSAHKAKRLGIIMDVVPA 212

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 360

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score =  105 bits (265), Expect = 3e-27
 Identities = 68/195 (34%), Positives = 100/195 (51%), Gaps = 22/195 (11%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAF-RPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF 129
           ++ E+     I  +T+NRP+ RNA      V  L+ A      D SV  +ILTG GT AF
Sbjct: 5   LLVERD--GHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGT-AF 61

Query: 130 CSGGD-QALRTRDGYADYENFGRLNVLDLQVQ----IRRLPK-------PVIAMVAGYAV 177
            SGG+ + +R R G      FG  +  D++      I+R+P        PVIA V G A+
Sbjct: 62  SSGGNVKDMRARVG-----AFG-GSPADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAI 115

Query: 178 GGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT 237
           G G  L  +CD+ IA++ A F ++  K+G      G+ ++ R++G  +A EM F      
Sbjct: 116 GAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAID 175

Query: 238 AEEAEKMGLVNTVVP 252
           A  A + GLV+ VVP
Sbjct: 176 AATALEWGLVSRVVP 190

Length = 266

>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional

 Score =  104 bits (261), Expect = 8e-27
 Identities = 67/175 (38%), Positives = 90/175 (51%), Gaps = 7/175 (4%)

Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-QALR 138
            I +IT++RP + NA    T   +   F + RDD  + V I+TG G + F +G D +A  
Sbjct: 12  SILEITLDRP-KANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAA 70

Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
             +G A   +FG      L  +I  L KPVIA V GYA GGG  L +  D  + ADNA F
Sbjct: 71  --EGEAPDADFGPGGFAGLT-EIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASF 127

Query: 199 GQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
                K+G   D+G G   + + + P  A EM    R   AEEA + G+VN VVP
Sbjct: 128 ALPEAKLGIVPDSG-GVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVP 181

Length = 261

>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional

 Score =  104 bits (260), Expect = 1e-26
 Identities = 63/176 (35%), Positives = 89/176 (50%), Gaps = 3/176 (1%)

Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT 139
           GIA +T+NRP++ NA     +  L+   +    D SV  +ILTG G  AF +G D    +
Sbjct: 12  GIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFS 71

Query: 140 RDGYADYENFGRLNVLDLQVQIRRL---PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
               A  +   R  V   Q    RL   PKPVIA V G A GGG  +     L IA++ A
Sbjct: 72  ASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERA 131

Query: 197 IFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           +F +   ++G      G+  + RL G K+A E+      ++AE A ++GLVN VVP
Sbjct: 132 LFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVVP 187

Length = 260

>gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score =  103 bits (258), Expect = 2e-26
 Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 11/187 (5%)

Query: 69  TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEA 128
             ++  + V EGIA++T+     +NAF      +L  AF+    D    V+ILTG     
Sbjct: 3   MKVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPN-Y 61

Query: 129 FCSGGDQA--LRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
           F +GG Q   L  + G       G     +L       P PVIA + G+A+GGG VL + 
Sbjct: 62  FATGGTQEGLLSLQTGK------GTFTEANLYSLALNCPIPVIAAMQGHAIGGGLVLGLY 115

Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGS-SIMSRLVGPKKAREMWFLARFYTAEEAEKMG 245
            D+ + +  +++     K G F  G G+ +I+   +G    +EM   AR+Y   E +K G
Sbjct: 116 ADIVVLSRESVYTANFMKYG-FTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRG 174

Query: 246 LVNTVVP 252
           +   V+P
Sbjct: 175 VPFPVLP 181

Length = 249

>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional

 Score =  103 bits (259), Expect = 3e-26
 Identities = 59/186 (31%), Positives = 90/186 (48%), Gaps = 15/186 (8%)

Query: 76  AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD- 134
            V +G+A IT+NRP+R+N     +  EL   F +      V  ++LTG G   FCSGGD 
Sbjct: 22  EVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAG-GNFCSGGDV 80

Query: 135 -------QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
                    +   +  A    F R+   DL   +R  P+P+IA V G   G G +L M  
Sbjct: 81  HEIIGPLTKMDMPELLA----FTRMTG-DLVKAMRACPQPIIAAVDGVCAGAGAILAMAS 135

Query: 188 DLTIAADNAIFGQTGPKVGSFDAGYGS-SIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
           DL +   +A       +VG   A  G+ +++ R++G  +A E+ +  R  +AEE E+ G 
Sbjct: 136 DLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGF 195

Query: 247 VNTVVP 252
            N +V 
Sbjct: 196 FNRLVE 201

Length = 277

>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional

 Score =  102 bits (255), Expect = 4e-26
 Identities = 61/180 (33%), Positives = 83/180 (46%), Gaps = 4/180 (2%)

Query: 73  YEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSG 132
               V +G+A IT+N PDRRNA       +L  A   A  D  V  +++TG G  AFC+G
Sbjct: 5   VLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGK-AFCAG 63

Query: 133 GD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTI 191
            D  AL    G    +   R  + D  + +   P P IA V G AVG G  L +  D+ I
Sbjct: 64  ADLTALGAAPGRPAEDGLRR--IYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRI 121

Query: 192 AADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
           A   A+F     K+G    G  + ++ R VGP+ AR        + AE A + GL   V 
Sbjct: 122 AGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA 181

Length = 249

>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional

 Score =  101 bits (254), Expect = 9e-26
 Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD----QALRT 139
           +T++ P  RNA  P      I A N A  D S+  ++LTG G   FC+GG+       R 
Sbjct: 16  LTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAG-GFFCAGGNLNRLLENRA 74

Query: 140 RDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG 199
           +       +   L+  D    IR  PKPVIA V G A G G  L + CDL +AA +A F 
Sbjct: 75  KPPSVQAASIDGLH--DWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFV 132

Query: 200 QTGPKVG-SFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
               KVG + D G GS  ++R +  + A E+    +  +AE    +G+VN + 
Sbjct: 133 MAYVKVGLTPDGG-GSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLA 184

Length = 260

>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional

 Score =  100 bits (251), Expect = 3e-25
 Identities = 66/184 (35%), Positives = 95/184 (51%), Gaps = 16/184 (8%)

Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR- 138
            IA IT+NRP+R N+     +  L  A  +   D+SV V++LTG G   F SG D     
Sbjct: 19  EIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAG-RGFSSGADHKSAG 77

Query: 139 --------TRDGYADYENFGRLNVLD-LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL 189
                   TR  YA       + +LD + + +RRL +PVIA V G A+GGG  L +  D+
Sbjct: 78  VVPHVEGLTRPTYA----LRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADI 133

Query: 190 TIAADNAIFGQTGPKVGSFDAGYG-SSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVN 248
            +A+ +A F   G   G   +  G S ++ R +G  +A E+    R   AEEAE++GLV+
Sbjct: 134 RVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVS 193

Query: 249 TVVP 252
             VP
Sbjct: 194 RQVP 197

Length = 276

>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional

 Score = 96.6 bits (241), Expect = 9e-24
 Identities = 63/201 (31%), Positives = 87/201 (43%), Gaps = 17/201 (8%)

Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
             T +     E A  + +A++T+NRP + NA  P    EL   F     D  V  ++L+G
Sbjct: 1   MMTTYESFTVELA--DHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSG 58

Query: 124 KGTEAFCSGGD--------QALRTRDGYADYENFGRLNVLDLQVQIR---RLPKPVIAMV 172
            G + F  G D          L          +  R  +L LQ  I       KPVIA V
Sbjct: 59  SG-KHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRRE-ILRLQAAINAVADCRKPVIAAV 116

Query: 173 AGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGS-SIMSRLVGPKKAREMWF 231
            G+ +GGG  L   CD+  A+ +A F      +G   A  GS   + R++G    RE+  
Sbjct: 117 QGWCIGGGVDLISACDMRYASADAKFSVREVDLG-MVADVGSLQRLPRIIGDGHLRELAL 175

Query: 232 LARFYTAEEAEKMGLVNTVVP 252
             R   A EAEK+GLVN V  
Sbjct: 176 TGRDIDAAEAEKIGLVNRVYD 196

Length = 272

>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional

 Score = 96.0 bits (239), Expect = 1e-23
 Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 12/194 (6%)

Query: 76  AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQ 135
           +  + +  +T+NRP+ RNA     + +L+     A  D+S+GV ++TG     F +G D 
Sbjct: 7   SRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNA-RFFAAGAD- 64

Query: 136 ALRTRDGYADYENFGRLNVLDLQVQ----IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTI 191
            L      A+ +    LN  D + Q    ++   KP+IA V GYA+G G  L ++CD+ I
Sbjct: 65  -LNE---MAEKDLAATLN--DPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVI 118

Query: 192 AADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
           A +NA FG     +G      G+  + R VG   A +M       TA++A++ GLV+ V 
Sbjct: 119 AGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVF 178

Query: 252 PVSLFVAYLMSLTK 265
           P  L +   + L  
Sbjct: 179 PPELTLERALQLAS 192

Length = 255

>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional

 Score = 95.3 bits (238), Expect = 2e-23
 Identities = 67/182 (36%), Positives = 90/182 (49%), Gaps = 22/182 (12%)

Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFN--DARDDSSVGVIILTGKGTEAFCSGGD-QA 136
            +  + +NRP+ RNA    T   L  AF   DA D +SV V  L G G   FC+G D +A
Sbjct: 12  PVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAV--LWGAG-GTFCAGADLKA 68

Query: 137 LRTRDGYADYENFGRLNVLDLQ------VQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
           + T          GR N L             RL KPVIA V+GYAV GG  L + CDL 
Sbjct: 69  VGT----------GRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLR 118

Query: 191 IAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250
           +A ++A+FG    + G      G+  + RL+G  +A ++    R   A+EA  +GL N V
Sbjct: 119 VAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRV 178

Query: 251 VP 252
           VP
Sbjct: 179 VP 180

Length = 254

>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase

 Score = 94.5 bits (235), Expect = 4e-23
 Identities = 62/182 (34%), Positives = 91/182 (50%), Gaps = 19/182 (10%)

Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT 139
           GI ++ ++RP+ +NA     ++ L  AF   + D+S  V++L       FC+G D   R 
Sbjct: 4   GIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERR 63

Query: 140 RDGYADYENFG---RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
           +   ++ + F    R     L+     L  P IA+V G A+GGG  L + CDL I  + A
Sbjct: 64  KMSPSEVQKFVNSLRSTFSSLEA----LSIPTIAVVEGAALGGGLELALSCDLRICGEEA 119

Query: 197 IFG--QTG----PKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250
           +FG  +TG    P  G      G+  + RLVG  +A+E+ F  R   A EA  MGLVN  
Sbjct: 120 VFGLPETGLAIIPGAG------GTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYC 173

Query: 251 VP 252
           VP
Sbjct: 174 VP 175

Length = 251

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score = 93.9 bits (234), Expect = 6e-23
 Identities = 58/192 (30%), Positives = 85/192 (44%), Gaps = 6/192 (3%)

Query: 76  AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQ 135
            V + +A IT+N P   NA     + EL    +    D +V V+++ G+G   F +G D 
Sbjct: 7   RVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEG-RFFSAGAD- 63

Query: 136 ALRTRDGYADYENFGRLNVLDLQV--QIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
            ++      + E    L  L      ++ +  KPVIA + G A+GGG  L M C +  A 
Sbjct: 64  -IKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFAT 122

Query: 194 DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPV 253
           ++A  G     +G      G+  + R VG  KA EM   +   T  EA K GLVN V P 
Sbjct: 123 ESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPE 182

Query: 254 SLFVAYLMSLTK 265
              +     L K
Sbjct: 183 ETLLDDAKKLAK 194

Length = 257

>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional

 Score = 94.3 bits (235), Expect = 1e-22
 Identities = 63/214 (29%), Positives = 92/214 (42%), Gaps = 32/214 (14%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
                + YE  V   IA+IT+NRP++ NA    T  EL  A   A  D  V VI+++G G
Sbjct: 7   DNLKTMTYE--VTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAG 64

Query: 126 TEAFCSGGD------QALRTRDGYADYENFGRLN---------VLDLQVQIR-------- 162
            + FC+G D       +     G A       +N         ++D Q+  R        
Sbjct: 65  -KGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSL 123

Query: 163 -RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV-GSFDAGYGSSIMSRL 220
               KP +A V GY V GG  + + CD  IAAD+A  G    +V G    G    + +  
Sbjct: 124 WHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATG----MWAYR 179

Query: 221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVS 254
           +GP++A+ + F     T  +A + GL    VP  
Sbjct: 180 LGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPE 213

Length = 302

>gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional

 Score = 92.8 bits (231), Expect = 2e-22
 Identities = 60/183 (32%), Positives = 83/183 (45%), Gaps = 20/183 (10%)

Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-----Q 135
           IA IT N P +RNA     + +L++A +D        VI+    G++ + +G D      
Sbjct: 14  IATITFNNPAKRNALSKVLIDDLMQALSDLNRPEIRVVILRAPSGSKVWSAGHDIHELPS 73

Query: 136 ALRTRDGYAD-YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD 194
             R    Y D      R         I++ PKPVIAMV G   GG   L M CDL IAA 
Sbjct: 74  GGRDPLSYDDPLRQILR--------MIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAAS 125

Query: 195 NAIFGQTGPKVGSFDAGYGSS-IMS--RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
            + F  T   +G     Y  S I++     G    +EM+F A   TA+ A  +G++N VV
Sbjct: 126 TSTFAMTPANLG---VPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVV 182

Query: 252 PVS 254
            V 
Sbjct: 183 EVE 185

Length = 261

>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated

 Score = 91.8 bits (228), Expect = 2e-22
 Identities = 64/190 (33%), Positives = 99/190 (52%), Gaps = 12/190 (6%)

Query: 67  EFTDIIYEKAVGE-GIAKITINRPDRRNAFRPHTVKELIRAFND--ARDDSSVGVIILTG 123
           EF +++      + G+A + ++RP   NA      +E++ A N+   RDD  V  +IL G
Sbjct: 3   EFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDD--VAAVILYG 59

Query: 124 KGTEAFCSGGD-QALRTRDG-YADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
            G E F +G D   LRT     AD     R   +D    +  +PKP +A + GYA+G G 
Sbjct: 60  -GHEIFSAGDDMPELRTLSAQEADTAARVRQQAVD---AVAAIPKPTVAAITGYALGAGL 115

Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEA 241
            L +  D  ++ DN  FG T    G   +G G + ++R  GP +A+E+ F  RF+ AEEA
Sbjct: 116 TLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEA 175

Query: 242 EKMGLVNTVV 251
             +GL++ +V
Sbjct: 176 LALGLIDEMV 185

Length = 222

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 91.8 bits (228), Expect = 4e-22
 Identities = 60/178 (33%), Positives = 85/178 (47%), Gaps = 4/178 (2%)

Query: 76  AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQ 135
           A+  G+A++T+NRPD+ N+F      EL  A      D     ++LTG G   FC+G D 
Sbjct: 4   ALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAG-RGFCAGQDL 61

Query: 136 ALR--TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
           + R  T  G  D           L  ++R LP PV+  V G A G G  L + CD+ +AA
Sbjct: 62  SERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAA 121

Query: 194 DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
           ++A F Q   K+G      G+  + RLVG  +A  +  L     A  A   GL+  VV
Sbjct: 122 ESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVV 179

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional

 Score = 89.8 bits (223), Expect = 3e-21
 Identities = 56/172 (32%), Positives = 90/172 (52%), Gaps = 5/172 (2%)

Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143
           +T+NRP+ RNA     ++ ++ A++   +D  +   ILTG G  AFC+G D    T+   
Sbjct: 18  VTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGG-AFCAGMDLKAATKKPP 76

Query: 144 ADYENFGRLNVLDLQVQI--RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQT 201
            D    G  +   +   +  RRL KP+IA V G A+ GG  +    D+ +A ++A FG +
Sbjct: 77  GDSFKDGSYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGIS 136

Query: 202 GPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
             K   F  G GS++ + R +    A ++    R  TA EA+++GL+  VVP
Sbjct: 137 EAKWSLFPMG-GSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVVP 187

Length = 263

>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional

 Score = 88.5 bits (220), Expect = 6e-21
 Identities = 71/189 (37%), Positives = 89/189 (47%), Gaps = 36/189 (19%)

Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFN--DARDDSSVGVIILTGKGTEAFCSGGDQA 136
             +  ITINRP+ RNA      + L  A +  DA  D SVG  ILTG G   FC+G D  
Sbjct: 11  GRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVG--ILTGAGG-TFCAGMD-- 65

Query: 137 LRTRDGYADYEN-------FGRLNVLDLQVQIRRLP-KPVIAMVAGYAVGGGHVLHMVCD 188
           L+    +A  E        FG L          R P KP+IA V GYA+ GG  L + CD
Sbjct: 66  LK---AFARGERPSIPGRGFGGLT--------ERPPRKPLIAAVEGYALAGGFELALACD 114

Query: 189 LTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK-----KAREMWFLARFYTAEEAEK 243
           L +AA +A FG    K G   AG G   + RL  P+      A E+       TAE A +
Sbjct: 115 LIVAARDAKFGLPEVKRGLVAAGGG---LLRL--PRRIPYHIAMELALTGDMLTAERAHE 169

Query: 244 MGLVNTVVP 252
           +GLVN +  
Sbjct: 170 LGLVNRLTE 178

Length = 254

>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional

 Score = 87.9 bits (218), Expect = 1e-20
 Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 7/179 (3%)

Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDD-SSVGVIILTGKGTEAFCSGGDQALR 138
           G+A +T++ P+  NA     +  L  A +   D  + V  ++LTG G   FC+G +   R
Sbjct: 13  GVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG-RGFCTGANLQGR 71

Query: 139 TRDGYADYENFGRLNVLD-----LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
              G            L+        ++R LP P++  V G A G G    ++ DL + A
Sbjct: 72  GSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCA 131

Query: 194 DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
            +A F Q   ++G    G  + ++ RLVG  +A E+  L     AE A + GLVN VV 
Sbjct: 132 RSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVVD 190

Length = 266

>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional

 Score = 85.8 bits (213), Expect = 6e-20
 Identities = 63/171 (36%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
             +  I + RP+RRNA      +EL  A   A  D S   I+LTG+GT  FC+G D +  
Sbjct: 8   GQVLTIELQRPERRNALNAELCEELREAVRKA-VDESARAIVLTGQGT-VFCAGADLS-- 63

Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
             D YAD  +F    ++++   I   P PVIA + G A+G G  L M CDL + A  A F
Sbjct: 64  -GDVYAD--DFPD-ALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYF 119

Query: 199 GQTGPKVG-SFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVN 248
                K G + D  +    +S LVG  +AR M   A   TAE+A   G+ N
Sbjct: 120 QFPVAKYGIALD-NWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMAN 169

Length = 243

>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional

 Score = 84.7 bits (210), Expect = 2e-19
 Identities = 59/187 (31%), Positives = 86/187 (45%), Gaps = 28/187 (14%)

Query: 78  GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA- 136
             G+A I +NRP +RNA     +  L  AF    +   V  ++L G+G + FC+G D + 
Sbjct: 9   DGGVATIGLNRPAKRNALNDGLIAALRAAFARLPEG--VRAVVLHGEG-DHFCAGLDLSE 65

Query: 137 LRTRDGYAD-------YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL 189
           LR RD           +  F +         I+    PVIA + G  VGGG  L     +
Sbjct: 66  LRERDAGEGMHHSRRWHRVFDK---------IQYGRVPVIAALHGAVVGGGLELASAAHI 116

Query: 190 TIAADNAIF----GQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMG 245
            +A ++  F    GQ G  VG    G GS  + RL+G  +  +M    R Y A+E E++G
Sbjct: 117 RVADESTYFALPEGQRGIFVG----GGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLG 172

Query: 246 LVNTVVP 252
           L   +VP
Sbjct: 173 LAQYLVP 179

Length = 255

>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional

 Score = 84.7 bits (210), Expect = 2e-19
 Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 8/179 (4%)

Query: 78  GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQAL 137
             G+ +I +N P   NA      +EL   + D   D  V V+++ G+G +AF +GGD AL
Sbjct: 19  PPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEG-KAFSAGGDLAL 77

Query: 138 RTRDGYADYENFGRLNVL----DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
              +   D+E   R  V     DL   +    KP+++ + G AVG G V  ++ D++IAA
Sbjct: 78  -VEEMADDFE--VRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAA 134

Query: 194 DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
            +A       ++G     + + +   L G  KA+    L    + EEAE++GLV+  V 
Sbjct: 135 KDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLAVD 193

Length = 268

>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional

 Score = 83.0 bits (206), Expect = 9e-19
 Identities = 65/181 (35%), Positives = 93/181 (51%), Gaps = 11/181 (6%)

Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA-L 137
           +GIA + +NRPD+ NA      +ELI      + D  +  +IL+G+G  AFC+G D   +
Sbjct: 11  DGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGG-AFCAGLDVKSV 69

Query: 138 RTRDGYADYENFGRL----NVLDLQVQI--RRLPKPVIAMVAGYAVGGGHVLHMVCDLTI 191
            +  G A    F RL    N L  +V +  RRLP PVIA + G   GGG  + +  D+ I
Sbjct: 70  ASSPGNAVKLLFKRLPGNAN-LAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRI 128

Query: 192 AADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250
           AA +        K G   D   G+  +  LV    ARE+ + AR ++AEEA ++GLV  V
Sbjct: 129 AAPDTKLSIMEAKWGLVPDMA-GTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHV 187

Query: 251 V 251
            
Sbjct: 188 S 188

Length = 262

>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional

 Score = 81.7 bits (202), Expect = 2e-18
 Identities = 61/194 (31%), Positives = 88/194 (45%), Gaps = 12/194 (6%)

Query: 76  AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQ 135
            V + +A +T++ P   NA       ELI  F++  +   V V++LTG G + FC+G D 
Sbjct: 9   EVSDHVAVVTLDNPPV-NALSRELRDELIAVFDEISERPDVRVVVLTGAG-KVFCAGAD- 65

Query: 136 ALRTR----DGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTI 191
            L+ R     G  D     R    +    IR   KPVIA V G A+G G  L   CD+ +
Sbjct: 66  -LKGRPDVIKGPGDLRAHNRR-TRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIV 123

Query: 192 AADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
           A++NA+FG     VG   AG G   M RL G    R M        A E  + G++   +
Sbjct: 124 ASENAVFGLPEIDVGL--AGGGKHAM-RLFGHSLTRRMMLTGYRVPAAELYRRGVIEACL 180

Query: 252 PVSLFVAYLMSLTK 265
           P    +   M + +
Sbjct: 181 PPEELMPEAMEIAR 194

Length = 257

>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional

 Score = 80.8 bits (200), Expect = 4e-18
 Identities = 55/192 (28%), Positives = 80/192 (41%), Gaps = 27/192 (14%)

Query: 72  IYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCS 131
           I       GIA++T++ P   NA        L  A   A  D    V++L  +G   F +
Sbjct: 3   ITSTTPEPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEG-RGFNA 60

Query: 132 GGD-QALRTRDGYA--------DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
           G D + L+   G+          +  F           +     PVIA V G+ +GGG  
Sbjct: 61  GVDIKELQATPGFTALIDANRGCFAAFR---------AVYECAVPVIAAVHGFCLGGGIG 111

Query: 183 LHMVCDLTIAADNAIFGQTGPKV--GSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEE 240
           L    D+ +A+D+A FG   P+V  G+  A    + + RLV     R ++F A   TA E
Sbjct: 112 LVGNADVIVASDDATFGL--PEVDRGALGAA---THLQRLVPQHLMRALFFTAATITAAE 166

Query: 241 AEKMGLVNTVVP 252
               G V  VVP
Sbjct: 167 LHHFGSVEEVVP 178

Length = 249

>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated

 Score = 80.2 bits (198), Expect = 8e-18
 Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 5/191 (2%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
           ++F  I   +    G A + ++R D+ NAF    ++ELI A +  + D+S+  ++L G+G
Sbjct: 2   SDFQTIELIRD-PRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRG 60

Query: 126 TEAFCSGGDQALRTRDGYADYE-NFGRLNVL-DLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
              F +G D A   +    DY  N      L +L   + RL  P +A+V G A GG   L
Sbjct: 61  RH-FSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGL 119

Query: 184 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEK 243
              CD+ I AD+A F  +  ++G   A   S  + + +G + AR     A  +    A +
Sbjct: 120 ISCCDMAIGADDAQFCLSEVRIGLAPAVI-SPFVVKAIGERAARRYALTAERFDGRRARE 178

Query: 244 MGLVNTVVPVS 254
           +GL+    P +
Sbjct: 179 LGLLAESYPAA 189

Length = 265

>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional

 Score = 80.2 bits (198), Expect = 8e-18
 Identities = 58/189 (30%), Positives = 88/189 (46%), Gaps = 10/189 (5%)

Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           F  IIYE  V + +A +T+NRP+  N F     +E++ A   A +D SV  +++   G +
Sbjct: 1   FEHIIYE--VEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANG-K 57

Query: 128 AFCSGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
            F  GGD    +     D          L V ++   I++LPKPVI  V G   G    +
Sbjct: 58  VFSVGGDLVEMKRAVDEDDVQSLVKIAEL-VNEISFAIKQLPKPVIMCVDGAVAGAAANM 116

Query: 184 HMVCDLTIAADNAIFGQTGPKVG-SFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
            +  D  IA+    F Q    VG + DAG G  +++R +G  +A  +       TAE+A 
Sbjct: 117 AVAADFCIASTKTKFIQAFVGVGLAPDAG-GLFLLTRAIGLNRATHLAMTGEALTAEKAL 175

Query: 243 KMGLVNTVV 251
           + G V  V 
Sbjct: 176 EYGFVYRVA 184

Length = 255

>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional

 Score = 80.1 bits (198), Expect = 9e-18
 Identities = 58/174 (33%), Positives = 81/174 (46%), Gaps = 4/174 (2%)

Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT 139
           G+A +TI      N      +  L +A      D  V V++L G G +AF  G D     
Sbjct: 16  GVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMA 75

Query: 140 RDGYADYENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
               A  E F  RL   DL   +R  P PVIA + G+ +GGG  L   CDL IAA +A F
Sbjct: 76  TLDQASAEAFISRLR--DLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQF 133

Query: 199 GQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           G    +VG   +   ++++ RL+G  + R +        A +A   GLV+ VVP
Sbjct: 134 GMPEVRVG-IPSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVP 186

Length = 256

>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional

 Score = 77.8 bits (192), Expect = 5e-17
 Identities = 54/179 (30%), Positives = 82/179 (45%), Gaps = 14/179 (7%)

Query: 76  AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD- 134
           AV  G+A +T++ P  RNA     V +L      A  D +V  ++LT  G   FC+G D 
Sbjct: 11  AVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGG-TFCAGADL 69

Query: 135 -QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
            +A        D        +  L   I  LPKPVIA + G+   GG  L   CD+ +A 
Sbjct: 70  SEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAG 129

Query: 194 DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK---KAREMWFL--ARFYTAEEAEKMGLV 247
             + F  T  ++     G   +I+S  + P+   +A   ++L   +F  A EA ++GLV
Sbjct: 130 PESTFALTEARI-----GVAPAIISLTLLPRLSPRAAARYYLTGEKF-GAAEAARIGLV 182

Length = 260

>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional

 Score = 76.5 bits (189), Expect = 2e-16
 Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 21/182 (11%)

Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSG-------- 132
           +  I ++RP +RNAF    + +L  A  +   D  + V +L   G E F +G        
Sbjct: 9   VLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHG-EHFTAGLDLADVAP 67

Query: 133 --GDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
                     +G  D                RRL KP++  V GY +  G  L +  D+ 
Sbjct: 68  KLAAGGFPFPEGGID----------PWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIV 117

Query: 191 IAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250
           +AADN  F Q   + G    G  +    +  G   A         + A+EA ++GLV  V
Sbjct: 118 VAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEV 177

Query: 251 VP 252
           VP
Sbjct: 178 VP 179

Length = 255

>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional

 Score = 74.0 bits (182), Expect = 1e-15
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 8/170 (4%)

Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
           EG A +T++RPD+ NA       E I        D  + V+I+TG+G  AFC G D +  
Sbjct: 8   EGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEG-RAFCVGADLSEF 66

Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
             D   D           +  +IR   K  I+ + G   G    + +  D   A+ +  F
Sbjct: 67  APDFAIDLRE----TFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKF 122

Query: 199 GQTGPKVG-SFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLV 247
                ++G + D G  +  + +L G ++  E+  L   +TAEEAE+ GL+
Sbjct: 123 VTAFQRLGLASDTGV-AYFLLKLTG-QRFYEILVLGGEFTAEEAERWGLL 170

Length = 248

>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 12/190 (6%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
           ++   ++ +      +A I +NRP+  NA     +KEL++A      +SS  +++L G G
Sbjct: 3   SKMESVVVKYE--GRVATIMLNRPEALNALDEPMLKELLQAL-KEVAESSAHIVVLRGNG 59

Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI----RRLPKPVIAMVAGYAVGGGH 181
              F +GGD  +       D   F    V++   +I      +PK  I+ + G A G G 
Sbjct: 60  -RGFSAGGDIKMMLSSN--DESKFDG--VMNTISEIVVTLYTMPKLTISAIHGPAAGLGL 114

Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEA 241
            + +  D  IA  +A        +G    G G   + + VG  KA+++ +  +  +A EA
Sbjct: 115 SIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEA 174

Query: 242 EKMGLVNTVV 251
             +GL++ V+
Sbjct: 175 LDLGLIDEVI 184

Length = 260

>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional

 Score = 74.2 bits (182), Expect = 2e-15
 Identities = 54/201 (26%), Positives = 87/201 (43%), Gaps = 20/201 (9%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
            +F  ++Y  A    +A IT+NRP++ N   P    E+  A   A  D  + VI+L G G
Sbjct: 2   PDFQTLLYTTA--GPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAG 59

Query: 126 TEAFCSGGD---------QALRTRDGYADYENFGRLNVLDLQ-----VQIRRLPKPVIAM 171
             AF  G D         +A+ T   +   ++F  +   +       + I R  KPVIA 
Sbjct: 60  -RAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQ 118

Query: 172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWF 231
           V G+ VGG     +  D+ IA+D+A+ G    ++      Y + +    +   K +    
Sbjct: 119 VHGWCVGGASDYALCADIVIASDDAVIGTPYSRMW---GAYLTGMWLYRLSLAKVKWHSL 175

Query: 232 LARFYTAEEAEKMGLVNTVVP 252
             R  T  +A +  L+N  VP
Sbjct: 176 TGRPLTGVQAAEAELINEAVP 196

Length = 298

>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional

 Score = 72.1 bits (177), Expect = 5e-15
 Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 9/184 (4%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE-AF 129
           ++       G+  I  NRP+++NA        + +A   A  D ++   +  G  TE  F
Sbjct: 6   LVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLG--TEGCF 63

Query: 130 CSGGDQA--LRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
            +G D    L    G   + +     +LD  + +    KP+++ V G A+G G  +H+ C
Sbjct: 64  SAGNDMQDFLAAAMGGTSFGS----EILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHC 119

Query: 188 DLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLV 247
           DLT A+  ++F      +        S +  RL+G ++A  +  L   ++AE A++ GL+
Sbjct: 120 DLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLI 179

Query: 248 NTVV 251
             +V
Sbjct: 180 WKIV 183

Length = 251

>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

 Score = 72.2 bits (177), Expect = 6e-15
 Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 21/194 (10%)

Query: 72  IYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCS 131
           I +K+    +  + +NRP +RNA       E  +A +    + +V VIIL+G G + FCS
Sbjct: 9   IIQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAG-DHFCS 67

Query: 132 GGD----QALRTRDGYADYENFG---RLNVLDLQ---VQIRRLPKPVIAMVAGYAVGGGH 181
           G D     ++  +    D    G   R  +  LQ     I +  KPVIA + G  +GGG 
Sbjct: 68  GIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGV 127

Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI--MSRL---VGPKKAREMWFLARFY 236
            +   CD+   +++A F      V   D    + +  + RL   VG   A E+    R +
Sbjct: 128 DIVTACDIRYCSEDAFF-----SVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRF 182

Query: 237 TAEEAEKMGLVNTV 250
           +  EA+++GLV+ V
Sbjct: 183 SGSEAKELGLVSRV 196

Length = 275

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 73.8 bits (182), Expect = 7e-15
 Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 17/187 (9%)

Query: 79  EGIAKITINRPDRR-NAFRPHTVKELIRAFNDARDDSSV-GVIILTGKGTEAFCSGGD-- 134
           + IA ITI+ P  + N  +    +++       R+D  + GV+ ++GK  + F +G D  
Sbjct: 14  DNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGK-PDNFIAGADIN 72

Query: 135 --QALRTRDGYADYENFGRL--NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
              A +T     + E   R    +     +I  LP PV+A + G  +GGG  L + C   
Sbjct: 73  MLAACKTA---QEAEALARQGQQLFA---EIEALPIPVVAAIHGACLGGGLELALACHYR 126

Query: 191 IAADNA--IFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVN 248
           +  D+   + G    ++G      G+  + RL+G   A +M    +   A++A K+GLV+
Sbjct: 127 VCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVD 186

Query: 249 TVVPVSL 255
            VVP S+
Sbjct: 187 DVVPHSI 193

Length = 708

>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional

 Score = 68.0 bits (167), Expect = 2e-13
 Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 18/180 (10%)

Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTR 140
           +A +T+N P   N +   +++ L +   +   D  V  +++TG G + F +G D  L   
Sbjct: 13  VAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGAD--LNL- 68

Query: 141 DGYADYENFGRLNVLDLQVQ--------IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
             +AD    G   V     +        +       IA + GYA+GGG    + CD+ IA
Sbjct: 69  --FAD----GDKAVAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIA 122

Query: 193 ADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
            + A        VG      G+  +  LVG   A+ M        A  A ++GLV  VV 
Sbjct: 123 EEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVE 182

Length = 258

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score = 68.3 bits (167), Expect = 5e-13
 Identities = 59/209 (28%), Positives = 89/209 (42%), Gaps = 24/209 (11%)

Query: 70  DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF 129
             I   A+ +GIA++  + P   N F   T+  L +A +  +  SS+  +ILT  G +AF
Sbjct: 6   KTIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILT-SGKDAF 64

Query: 130 CSGGD---------QALRTRDGYADYEN--FGRLNVLDLQVQIRRLPKPVIAMVAGYAVG 178
             G D                 +  + N  F +L           LP P +A + G A+G
Sbjct: 65  IVGADITEFLGLFALPDAELIQWLLFANSIFNKL---------EDLPVPTVAAINGIALG 115

Query: 179 GGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYT 237
           GG    +  D  IA D A  G    K+G    G+G ++ + R++G   A E     +   
Sbjct: 116 GGCECVLATDFRIADDTAKIGLPETKLGIM-PGFGGTVRLPRVIGADNALEWIASGKENR 174

Query: 238 AEEAEKMGLVNTVV-PVSLFVAYLMSLTK 265
           AE+A K+G V+ VV    L  A L  L  
Sbjct: 175 AEDALKVGAVDAVVTADKLGAAALQLLKD 203

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score = 68.3 bits (167), Expect = 5e-13
 Identities = 49/187 (26%), Positives = 92/187 (49%), Gaps = 13/187 (6%)

Query: 79  EGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSV-GVIILTGKGTEAFCSGGD-- 134
           +GIA +TI+ P ++ N  +     ++    +  + D S+ G+++++GK  + F +G D  
Sbjct: 9   DGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGK-PDNFIAGADIS 67

Query: 135 --QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
              A +T          G+     L  ++  LP PV+A + G  +GGG  L + C   + 
Sbjct: 68  MLAACQTAGEAKALAQQGQ----VLFAELEALPIPVVAAIHGACLGGGLELALACHSRVC 123

Query: 193 ADN--AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250
           +D+   + G    ++G      G+  + RL+G   A +M    +   A++A K+GLV+ V
Sbjct: 124 SDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDV 183

Query: 251 VPVSLFV 257
           VP S+ +
Sbjct: 184 VPQSILL 190

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|236338 PRK08788, PRK08788, enoyl-CoA hydratase; Validated

 Score = 61.5 bits (150), Expect = 4e-11
 Identities = 55/182 (30%), Positives = 75/182 (41%), Gaps = 23/182 (12%)

Query: 88  RPDRRNAFRPHTVKELIRAFNDAR---DDSSVGV--IILTGKGTEAFCSGGDQAL----- 137
           R   R  F    + +++      R   DDS + V   +L       F  GGD AL     
Sbjct: 33  RAQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELI 92

Query: 138 --RTRDGYADYENFGRLNVLDLQVQIRRLPKPV--IAMVAGYAVGGGHVLHMVCDLTIAA 193
               RD    Y    R  V  +    R        IA+V G A+GGG    +     IA 
Sbjct: 93  RAGDRDALLAY---ARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAE 149

Query: 194 DNAIFGQTGPKVGSFD--AGYGS-SIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250
             A  G   P++  F+   G G+ S ++R VGPK A E+    + YTAEE   MGLV+ +
Sbjct: 150 RGAKMGF--PEI-LFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLVDVL 206

Query: 251 VP 252
           V 
Sbjct: 207 VE 208

Length = 287

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 61.8 bits (151), Expect = 7e-11
 Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 13/188 (6%)

Query: 72  IYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSV-GVIILTGKGTEAFC 130
           +    + +GIA++  + P   N     T+  L  A +     S + G+++ + K   AF 
Sbjct: 8   LQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKD--AFI 65

Query: 131 SGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
            G D     +L         +     N   +  ++  LP P +A + GYA+GGG    + 
Sbjct: 66  VGADITEFLSLFAAPEEELSQWLHFAN--SIFNRLEDLPVPTVAAINGYALGGGCECVLA 123

Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLA-RFYTAEEAEKM 244
            D  +A+ +A  G    K+G    G+G ++ + RL+G   A E W  A +   AE+A K+
Sbjct: 124 TDYRVASPDARIGLPETKLGIM-PGFGGTVRLPRLIGADNALE-WIAAGKDVRAEDALKV 181

Query: 245 GLVNTVVP 252
           G V+ VV 
Sbjct: 182 GAVDAVVA 189

Length = 715

>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase

 Score = 60.5 bits (146), Expect = 2e-10
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 4/142 (2%)

Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143
           +T+NRP + NA   H +  L++ F    +D SV ++IL G G  AFC+GGD A   RD  
Sbjct: 22  LTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHG-RAFCAGGDVAAVVRDIE 80

Query: 144 ADYENFGRLNVLD---LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200
                 G     D   L   +    K  ++++ G  +GGG  + +     IA +N +F  
Sbjct: 81  QGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAM 140

Query: 201 TGPKVGSFDAGYGSSIMSRLVG 222
               +G F     S  +SRL G
Sbjct: 141 PETALGLFPDVGASYFLSRLPG 162

Length = 381

>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional

 Score = 59.4 bits (145), Expect = 3e-10
 Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 15/119 (12%)

Query: 70  DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF 129
           +++ E   G G+  IT+NRP   NA     ++ +  A +   DD +V  +++ G G   F
Sbjct: 4   EVLAEVEGGVGV--ITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGF 61

Query: 130 CSGGD-----QALRTRDGYADYENFG---RLNVLDLQVQIRRLPKPVIAMVAGYAVGGG 180
           C+GGD     +A R  D  A    F    RLN L     I R PKP IA++ G  +GGG
Sbjct: 62  CAGGDIRALYEAARAGDPLAADRFFREEYRLNAL-----IARYPKPYIALMDGIVMGGG 115

Length = 342

>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 54.7 bits (132), Expect = 6e-09
 Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 5/177 (2%)

Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-QAL 137
             +  + ++RP+ +N      + E +   +     +++  ++L G   E FC G D  A+
Sbjct: 12  GDVCFLQLHRPEAQNTINDRLIAECMDVLDRCEHAATI--VVLEGL-PEVFCFGADFSAI 68

Query: 138 RTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAI 197
             +      +      + DL  ++   P   IA V G    GG       D+ IA + A 
Sbjct: 69  AEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAP 128

Query: 198 FGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVS 254
           F  +    G   A      + R +G +KA  M  + +  TA++A   GLV+     S
Sbjct: 129 FSLSELLFGLIPACV-LPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYGANS 184

Length = 255

>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 46/145 (31%), Positives = 64/145 (44%), Gaps = 12/145 (8%)

Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT-RDG 142
           IT+NRP + N      V  L         D SV +II+ G G  AF +GGD  L+   DG
Sbjct: 24  ITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAG-RAFSAGGD--LKMFYDG 80

Query: 143 YADYENFGRLNVLD----LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
               ++   L V+     L   I    K  +A+V G  +GGG  L +     +  +  +F
Sbjct: 81  RESDDSC--LEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVF 138

Query: 199 GQTGPKVG-SFDAGYGSSIMSRLVG 222
                 VG   D G+ S I+SRL G
Sbjct: 139 ATPEASVGFHTDCGF-SYILSRLPG 162

Length = 379

>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 52.4 bits (125), Expect = 7e-08
 Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 18/182 (9%)

Query: 54  DVVWRIACDESGTEFT----DIIYEKAV-GEGIAKITI-NRPDRRNAFRPHTVKELIRAF 107
           D +WR     S         D+ Y+  V G G ++  I NRP   NA   H    L + +
Sbjct: 14  DKLWRFGYRRSFCSLKLTPEDLDYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLY 73

Query: 108 NDARDDSSVGVIILTGKGTEAFCSGGDQA----LRTRDGYAD--YENFGRLNVLDLQVQI 161
            +  +D ++G +++ G G  AFC+GGD      LR R G  D   E F  L        +
Sbjct: 74  KNWEEDPNIGFVMMKGSG-RAFCAGGDIVSLYHLRKR-GSPDAIREFFSSL--YSFIYLL 129

Query: 162 RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRL 220
               KP +A++ G  +GGG  + +     +A D  IF      +G F    G+S  +S L
Sbjct: 130 GTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIG-FHPDAGASFNLSHL 188

Query: 221 VG 222
            G
Sbjct: 189 PG 190

Length = 401

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 11/179 (6%)

Query: 80  GIAKITINRPDRR-NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-QAL 137
            +A + I+ P+ + N        E     N+   + ++   +L      +F +G D Q +
Sbjct: 22  DVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMI 81

Query: 138 RTRDGYADYENFGRLNVLDLQVQIRRL---PKPVIAMVAGYAVGGGHVLHMVCDLTIAAD 194
                  +     +    + Q    R+    KP++A ++G  +GGG  L + C   IA  
Sbjct: 82  AACKTAQEVTQLSQ----EGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATK 137

Query: 195 NAIFGQTGPKV--GSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
           +       P+V  G      G+  + +L G   A +M    +   A+ A+KMG+V+ +V
Sbjct: 138 DRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGIVDQLV 196

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 46/193 (23%), Positives = 75/193 (38%), Gaps = 28/193 (14%)

Query: 51  PSHDVVW-RIACDESGTEFT--------DIIYEKAVGEGIAK---ITINRPDRRNAFRPH 98
            +  + W R      G  F+        D + ++ + EG AK     +NRP   NA    
Sbjct: 10  VAVPLQWVRFGSVSYGRSFSALPNYAANDDLQDQVLVEGRAKSRAAILNRPSSLNALTIP 69

Query: 99  TVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD--------QALRTRDGYADYENFG 150
            V  L R +    ++  +G +++ G G  AFCSG D              +    +EN  
Sbjct: 70  MVARLKRLYESWEENPDIGFVLMKGSG-RAFCSGADVVSLYHLINEGNVEECKLFFENLY 128

Query: 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSF-D 209
           +   L          KP +A++ G  +G G  + +     +  D  +F     ++G   D
Sbjct: 129 KFVYL-----QGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPD 183

Query: 210 AGYGSSIMSRLVG 222
           AG  S  +SRL G
Sbjct: 184 AG-ASYYLSRLPG 195

Length = 407

>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA hydratase

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 1/95 (1%)

Query: 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI 216
           L + +   P P++  V G  +GGG  +    +L  AA +A  GQ    +G F A   S +
Sbjct: 81  LVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVF-APAASCL 139

Query: 217 MSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
           +   +G   A ++ +  R     E  ++GL N V 
Sbjct: 140 LPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVA 174

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. Length = 251

>gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase; Provisional

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 19/164 (11%)

Query: 102 ELIRAFNDA-----RDDSSVGVIILTGKGTEAFCSGGD----QALRTRDGYADYENFGRL 152
            + R+ +DA      D +  GV+  +G   + F +G D     A +T    A Y  F   
Sbjct: 38  AMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKT--SAARYAEFWLT 95

Query: 153 NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG----QTGPKVGSF 208
               L V++ R     +  + G    GG  + + CD  +       G      G  V  F
Sbjct: 96  QTTFL-VRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKF 154

Query: 209 DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
              +    M R++  K A  +    R     EA+++GL++ VVP
Sbjct: 155 ---WARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVP 195

Length = 278

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
PLN02921	327	naphthoate synthase	100.0
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	100.0
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	100.0
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	100.0
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	100.0
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	100.0
PRK05980	260	enoyl-CoA hydratase; Provisional	100.0
PRK06144	262	enoyl-CoA hydratase; Provisional	100.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
PRK06143	256	enoyl-CoA hydratase; Provisional	100.0
PRK06190	258	enoyl-CoA hydratase; Provisional	100.0
PRK09076	258	enoyl-CoA hydratase; Provisional	100.0
PRK06142	272	enoyl-CoA hydratase; Provisional	100.0
PRK05862	257	enoyl-CoA hydratase; Provisional	100.0
PRK06563	255	enoyl-CoA hydratase; Provisional	100.0
PRK07799	263	enoyl-CoA hydratase; Provisional	100.0
PRK07327	268	enoyl-CoA hydratase; Provisional	100.0
PRK06127	269	enoyl-CoA hydratase; Provisional	100.0
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	100.0
PRK08150	255	enoyl-CoA hydratase; Provisional	100.0
PRK07657	260	enoyl-CoA hydratase; Provisional	100.0
PRK06494	259	enoyl-CoA hydratase; Provisional	100.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	100.0
PLN02600	251	enoyl-CoA hydratase	100.0
PRK05995	262	enoyl-CoA hydratase; Provisional	100.0
PRK08140	262	enoyl-CoA hydratase; Provisional	100.0
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	100.0
PRK08139	266	enoyl-CoA hydratase; Validated	100.0
PRK06023	251	enoyl-CoA hydratase; Provisional	100.0
PRK07658	257	enoyl-CoA hydratase; Provisional	100.0
PRK07260	255	enoyl-CoA hydratase; Provisional	100.0
PRK08260	296	enoyl-CoA hydratase; Provisional	100.0
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	100.0
PRK05869	222	enoyl-CoA hydratase; Validated	100.0
PRK09245	266	enoyl-CoA hydratase; Provisional	100.0
PRK08138	261	enoyl-CoA hydratase; Provisional	100.0
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	100.0
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	100.0
PRK08252	254	enoyl-CoA hydratase; Provisional	100.0
PRK07511	260	enoyl-CoA hydratase; Provisional	100.0
PRK05864	276	enoyl-CoA hydratase; Provisional	100.0
PRK05981	266	enoyl-CoA hydratase; Provisional	100.0
PRK06210	272	enoyl-CoA hydratase; Provisional	100.0
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	100.0
PRK06688	259	enoyl-CoA hydratase; Provisional	100.0
PRK08259	254	enoyl-CoA hydratase; Provisional	100.0
PRK08258	277	enoyl-CoA hydratase; Provisional	100.0
PRK05870	249	enoyl-CoA hydratase; Provisional	100.0
PRK07468	262	enoyl-CoA hydratase; Provisional	100.0
PLN02888	265	enoyl-CoA hydratase	100.0
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK07659	260	enoyl-CoA hydratase; Provisional	100.0
PRK08321	302	naphthoate synthase; Validated	100.0
PRK07509	262	enoyl-CoA hydratase; Provisional	100.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	100.0
PRK06495	257	enoyl-CoA hydratase; Provisional	100.0
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK07938	249	enoyl-CoA hydratase; Provisional	100.0
PRK08290	288	enoyl-CoA hydratase; Provisional	100.0
PRK08788	287	enoyl-CoA hydratase; Validated	100.0
PRK08272	302	enoyl-CoA hydratase; Provisional	100.0
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	100.0
PRK12478	298	enoyl-CoA hydratase; Provisional	100.0
PRK07854	243	enoyl-CoA hydratase; Provisional	100.0
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
PRK06072	248	enoyl-CoA hydratase; Provisional	100.0
PRK07827	260	enoyl-CoA hydratase; Provisional	100.0
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	100.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	100.0
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	100.0
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK06213	229	enoyl-CoA hydratase; Provisional	100.0
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
KOG1679	291	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
KOG0016	266	consensus Enoyl-CoA hydratase/isomerase [Lipid tra	100.0
KOG1684	401	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
KOG1682	287	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.85
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.84
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.69
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.63
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.6
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.6
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.55
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.54
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.54
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	99.42
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.38
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	99.07
PRK10949	618	protease 4; Provisional	98.96
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	98.95
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	98.73
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	98.68
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	98.65
PRK11778	330	putative inner membrane peptidase; Provisional	98.6
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	98.59
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	98.58
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	98.56
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	98.54
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	98.49
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	98.46
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	98.45
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	98.42
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	98.32
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	98.31
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	98.26
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	98.25
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	98.25
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	98.22
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	98.2
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	98.15
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	98.13
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	98.11
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	98.06
PRK10949	618	protease 4; Provisional	97.95
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	97.9
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	97.88
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	97.86
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	97.85
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	97.81
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	97.78
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	97.63
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	97.53
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	97.35
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	97.27
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	97.26
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	96.56
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	96.44
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	96.41
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	94.58
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	94.15
KOG0840	275	consensus ATP-dependent Clp protease, proteolytic	93.92
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	93.65
PF02601	319	Exonuc_VII_L: Exonuclease VII, large subunit; Inte	91.44
TIGR00237	432	xseA exodeoxyribonuclease VII, large subunit. This	90.47
COG0074	293	SucD Succinyl-CoA synthetase, alpha subunit [Energ	88.95
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	88.52
PRK00286	438	xseA exodeoxyribonuclease VII large subunit; Revie	87.7
COG1570	440	XseA Exonuclease VII, large subunit [DNA replicati	86.27

>PLN02921 naphthoate synthase

Probab=100.00  E-value=7.8e-58  Score=415.06  Aligned_cols=264  Identities=73%  Similarity=1.117  Sum_probs=236.0

Q ss_pred             hhHHHHHHHHhhccccccccCCCCCCccccccCCCCCcccccCCCCCCCcchhhhhccCCCCCcceEEEEEEecCCEEEE
Q 024304            5 IDSARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKI   84 (269)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~gv~~I   84 (269)
                      |++++||++++++||.|.++.++..++...+...+.++|+++||.+|.++..|+.++.++..+|++|.+++..+++|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Va~I   80 (327)
T PLN02921          1 MDAARRRLARVANHLVPSANPASMAAARSSSATAPPDSYRRVHGDVSSEPVVWRKVPDGSGKEFTDIIYEKAVGEGIAKI   80 (327)
T ss_pred             CchhhhHHHHHhcccCcccccccccccccccccCCCCchhhhccccCCCCccccccccCCccCCceEEEEEecCCCEEEE
Confidence            68999999999999999888777777655566689999999999999999999988888888999999987223899999


Q ss_pred             EEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcC
Q 024304           85 TINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRL  164 (269)
Q Consensus        85 ~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  164 (269)
                      +||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++.................+++..+.++
T Consensus        81 tLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  160 (327)
T PLN02921         81 TINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRL  160 (327)
T ss_pred             EECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999998679999999987643221111112222234567788999


Q ss_pred             CCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHc
Q 024304          165 PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKM  244 (269)
Q Consensus       165 ~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~  244 (269)
                      |||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|..++++|+++|+.++|+||+++
T Consensus       161 ~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~  240 (327)
T PLN02921        161 PKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKM  240 (327)
T ss_pred             CCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccceecCCCcHHHHHHHHHHhhc
Q 024304          245 GLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       245 GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ||||+|+|.+++++++.+++++|+
T Consensus       241 GLV~~vv~~~~l~~~a~~~a~~la  264 (327)
T PLN02921        241 GLVNTVVPLDELEGETVKWCREIL  264 (327)
T ss_pred             CCceEEeCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999886

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=2.4e-50  Score=346.90  Aligned_cols=193  Identities=39%  Similarity=0.575  Sum_probs=175.0

Q ss_pred             eEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhh
Q 024304           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF  149 (269)
Q Consensus        70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~  149 (269)
                      .....+  +++|+.|+||||+++|+|+..|+.+|.++|..+++|++++++||||.| ++||+|+|++++....+.+....
T Consensus        38 ~~~~~~--d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~g-ksFcsG~Dl~e~~~~~~~~~~~~  114 (290)
T KOG1680|consen   38 IELVGE--DNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSG-KSFCSGADLKEMKKDEFQDVSDG  114 (290)
T ss_pred             eEEeec--CCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCC-CccccccCHHHHhhccccccccc
Confidence            344445  899999999999999999999999999999999999999999999999 79999999999876544432211


Q ss_pred             hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHH
Q 024304          150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREM  229 (269)
Q Consensus       150 ~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l  229 (269)
                      .   +...+..+.+.+||+||+++|+|+|||++|+++||+|||+|+|+|++++.++|++|.+||+.+|+|.+|.++|+++
T Consensus       115 ~---~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~  191 (290)
T KOG1680|consen  115 I---FLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEM  191 (290)
T ss_pred             c---ccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHH
Confidence            1   2233445558999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          230 WFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       230 ~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++||++++++||+++||||+|+|.++++++|.++++++|
T Consensus       192 ~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia  230 (290)
T KOG1680|consen  192 ILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIA  230 (290)
T ss_pred             HHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999987

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=100.00  E-value=6.1e-48  Score=343.39  Aligned_cols=202  Identities=66%  Similarity=1.066  Sum_probs=181.3

Q ss_pred             CCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc
Q 024304           65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA  144 (269)
Q Consensus        65 ~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~  144 (269)
                      ..+++++.++.  +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++......
T Consensus         9 ~~~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~   86 (273)
T PRK07396          9 CKEYEDILYKS--ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYV   86 (273)
T ss_pred             CCCCcceEEEe--cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhccccc
Confidence            66788899998  9999999999999999999999999999999999999999999999986699999999986422111


Q ss_pred             chhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHH
Q 024304          145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK  224 (269)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~  224 (269)
                      ...........+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++.+|++++|..
T Consensus        87 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~  166 (273)
T PRK07396         87 DDDGVPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQK  166 (273)
T ss_pred             chhhhhhhHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHH
Confidence            11111112234566788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          225 KAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       225 ~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++++|+++|++++|+||+++||||+|+|++++++.+.++|++|+
T Consensus       167 ~a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  210 (273)
T PRK07396        167 KAREIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREML  210 (273)
T ss_pred             HHHHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999886

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=100.00  E-value=8.3e-48  Score=339.61  Aligned_cols=197  Identities=52%  Similarity=0.854  Sum_probs=177.8

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~  147 (269)
                      |++|.++.  +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++.... ....
T Consensus         1 ~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~-~~~~   77 (256)
T TIGR03210         1 YEDILYEK--RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGY-DGRG   77 (256)
T ss_pred             CCceEEEe--eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccc-cchh
Confidence            45688888  89999999999999999999999999999999999999999999999877999999999864211 1111


Q ss_pred             hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHH
Q 024304          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR  227 (269)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~  227 (269)
                      .. ...+..++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|..+++
T Consensus        78 ~~-~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~  156 (256)
T TIGR03210        78 TI-GLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAR  156 (256)
T ss_pred             HH-HHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHH
Confidence            11 12245677889999999999999999999999999999999999999999999999998888899999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          228 EMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       228 ~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +|+++|++++|+||+++||||+|+|.+++++.+.+++++|+
T Consensus       157 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia  197 (256)
T TIGR03210       157 EIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIV  197 (256)
T ss_pred             HHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999886

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=100.00  E-value=1.3e-47  Score=341.69  Aligned_cols=201  Identities=33%  Similarity=0.468  Sum_probs=180.2

Q ss_pred             CCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc
Q 024304           65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA  144 (269)
Q Consensus        65 ~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~  144 (269)
                      ...|+.|.++.  +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|.|++++......
T Consensus         4 ~~~~~~i~~~~--~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~   80 (275)
T PRK09120          4 ENRWDTVKVEV--EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAG-DAWSAGMDLKEYFRETDA   80 (275)
T ss_pred             ccccccEEEEE--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCC-CceecCcCHHHHhhcccc
Confidence            44578899998  899999999999999999999999999999999999999999999998 699999999886321111


Q ss_pred             chh---hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhh
Q 024304          145 DYE---NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV  221 (269)
Q Consensus       145 ~~~---~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~  221 (269)
                      ...   .........++..+..+||||||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~i  160 (275)
T PRK09120         81 QPEILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTV  160 (275)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHc
Confidence            111   01111234567788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          222 GPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       222 G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |..++++|+++|+.++|+||+++||||+|+|.+++++++.+++++|+
T Consensus       161 G~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  207 (275)
T PRK09120        161 GHRDALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLL  207 (275)
T ss_pred             CHHHHHHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999986

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=100.00  E-value=1.5e-48  Score=324.05  Aligned_cols=203  Identities=67%  Similarity=1.056  Sum_probs=192.0

Q ss_pred             CCCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcC--CCCceecccccccccc-
Q 024304           64 SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK--GTEAFCSGGDQALRTR-  140 (269)
Q Consensus        64 ~~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~--g~~~Fc~G~Dl~~~~~-  140 (269)
                      ...+|++|.|++. .++|++|+||||+++|+|.+.++.||.++|.+++.|+++.||||||.  |+++||+|+|.+.... 
T Consensus        13 ~~~~y~dI~Y~~~-~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~   91 (282)
T COG0447          13 GFEGYEDITYEKS-VDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDS   91 (282)
T ss_pred             hcCCcceeEEeec-cCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccC
Confidence            3668999999994 48999999999999999999999999999999999999999999975  7899999999998876 


Q ss_pred             CCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhh
Q 024304          141 DGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL  220 (269)
Q Consensus       141 ~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~  220 (269)
                      ..+.+++...+.++.++++.|+.+||||||.|+|+++|||..|.+.||+.||+++|+|++..+++|.|.+++|+.+|.|.
T Consensus        92 ~gY~~d~~~~rLnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~  171 (282)
T COG0447          92 GGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARI  171 (282)
T ss_pred             CCccCCccCcccchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHH
Confidence            56666777778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhh
Q 024304          221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQ  267 (269)
Q Consensus       221 ~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~l  267 (269)
                      +|+++|+|+++.++.++|+||+++||||.|||.++|+++..+.++++
T Consensus       172 VGqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~  218 (282)
T COG0447         172 VGQKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREM  218 (282)
T ss_pred             hhhhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988765

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=100.00  E-value=1.1e-47  Score=339.50  Aligned_cols=199  Identities=66%  Similarity=1.036  Sum_probs=176.2

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~  148 (269)
                      +++.+++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++..........
T Consensus         2 ~~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~   80 (259)
T TIGR01929         2 TDIRYEKS-TDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSG   80 (259)
T ss_pred             ceEEEEEc-CCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhh
Confidence            45677652 58999999999999999999999999999999999999999999999867999999998764221111111


Q ss_pred             hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE  228 (269)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~  228 (269)
                      .....+..+...+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++.+|++++|..++++
T Consensus        81 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~  160 (259)
T TIGR01929        81 VHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKARE  160 (259)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHH
Confidence            11122345677889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |+++|++++|+||+++||||+|+|++++.+.+.+++++|+
T Consensus       161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  200 (259)
T TIGR01929       161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREIL  200 (259)
T ss_pred             HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999886

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.9e-47  Score=336.92  Aligned_cols=197  Identities=30%  Similarity=0.433  Sum_probs=176.4

Q ss_pred             eEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc-chh-
Q 024304           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA-DYE-  147 (269)
Q Consensus        70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~-~~~-  147 (269)
                      .|.++.  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++...... ... 
T Consensus         4 ~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~   81 (260)
T PRK05980          4 TVLIEI--RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVA   81 (260)
T ss_pred             eEEEEE--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhh
Confidence            578888  8999999999999999999999999999999999999999999999986799999999986432110 111 


Q ss_pred             -hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304          148 -NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA  226 (269)
Q Consensus       148 -~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a  226 (269)
                       .........++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..++
T Consensus        82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  161 (260)
T PRK05980         82 LRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRA  161 (260)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHH
Confidence             1111123456778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++|+++|++++|+||+++||||+|+|++++++++.+++++++
T Consensus       162 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  203 (260)
T PRK05980        162 LELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRII  203 (260)
T ss_pred             HHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998876

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.9e-47  Score=336.38  Aligned_cols=199  Identities=31%  Similarity=0.403  Sum_probs=178.6

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~  147 (269)
                      .+.+.++.  +++|++|+||||+++|+||.+|+++|.+++++++.|+++++|||+|.|+++||+|+|++++.........
T Consensus         7 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~   84 (262)
T PRK06144          7 TDELLLEV--RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDA   84 (262)
T ss_pred             CCceEEEe--eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHH
Confidence            35688888  8999999999999999999999999999999999999999999999986799999999986432211111


Q ss_pred             hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCC-cccCCCChHHHHHHhhhCHHHH
Q 024304          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPK-VGSFDAGYGSSIMSRLVGPKKA  226 (269)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~-~Gl~p~~g~~~~l~r~~G~~~a  226 (269)
                      ......+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.+ +|++|+++++++|++++|..++
T Consensus        85 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a  164 (262)
T PRK06144         85 VAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARV  164 (262)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHH
Confidence            111223456777889999999999999999999999999999999999999999996 9999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++++++|+.++|+||+++||||+|+|.+++.+++.+++++++
T Consensus       165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~  206 (262)
T PRK06144        165 KDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLA  206 (262)
T ss_pred             HHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999886

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=100.00  E-value=6.2e-47  Score=334.79  Aligned_cols=199  Identities=37%  Similarity=0.535  Sum_probs=179.5

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~  146 (269)
                      +|+++.+++  +++|++|+||||+++|++|.+|+.+|.++++.+++|+++++|||+|.|+++||+|+|++++........
T Consensus         2 ~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~   79 (260)
T PRK05809          2 ELKNVILEK--EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEG   79 (260)
T ss_pred             CcceEEEEE--eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHH
Confidence            456788988  899999999999999999999999999999999999999999999998679999999998753221111


Q ss_pred             hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA  226 (269)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a  226 (269)
                      ..+ ......++..+.++|||+||+|+|+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|..++
T Consensus        80 ~~~-~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  158 (260)
T PRK05809         80 RKF-GLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKA  158 (260)
T ss_pred             HHH-HHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence            111 1123467778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++|+++|+.++|+||+++||||+|+|++++.+.+.+++++|+
T Consensus       159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  200 (260)
T PRK05809        159 KELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIA  200 (260)
T ss_pred             HHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999876

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.2e-47  Score=334.49  Aligned_cols=197  Identities=30%  Similarity=0.431  Sum_probs=175.3

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~  148 (269)
                      .++.++.. +++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||||.|+++||+|+|++++..........
T Consensus         6 ~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~   84 (256)
T PRK06143          6 AHAGVTRD-DRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEA   84 (256)
T ss_pred             ccceeeec-CCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHH
Confidence            34667753 78999999999999999999999999999999999999999999999867999999999875322111111


Q ss_pred             hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE  228 (269)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~  228 (269)
                      + ...+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|+ |++++++++++++|..++++
T Consensus        85 ~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a~~  162 (256)
T PRK06143         85 F-ISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWARTRW  162 (256)
T ss_pred             H-HHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHHHHH
Confidence            1 122456778899999999999999999999999999999999999999999999997 88888999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |+++|+.++|+||+++||||+|+|++++.+.+.+++++++
T Consensus       163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  202 (256)
T PRK06143        163 LLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLA  202 (256)
T ss_pred             HHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999886

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.5e-47  Score=333.66  Aligned_cols=195  Identities=31%  Similarity=0.432  Sum_probs=178.2

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~  147 (269)
                      ++.+.++.  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++....... .
T Consensus         3 ~~~v~~~~--~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~-~   78 (258)
T PRK06190          3 EPILLVET--HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGAD-PAFCAGLDLKELGGDGSAY-G   78 (258)
T ss_pred             CceEEEEe--eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCccCCcCHHHHhcccchh-h
Confidence            45788888  899999999999999999999999999999999999999999999998 6999999999875322111 1


Q ss_pred             hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHH
Q 024304          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR  227 (269)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~  227 (269)
                      .  ...+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++++++++++++|..+++
T Consensus        79 ~--~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  156 (258)
T PRK06190         79 A--QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRAR  156 (258)
T ss_pred             H--HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHH
Confidence            1  12245677889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          228 EMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       228 ~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +|+++|++++|+||+++||||+++|.+++++++.+++++|+
T Consensus       157 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  197 (258)
T PRK06190        157 RMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIA  197 (258)
T ss_pred             HHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999886

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9e-47  Score=333.38  Aligned_cols=196  Identities=24%  Similarity=0.335  Sum_probs=176.2

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~  148 (269)
                      ..|.+++  +++|++||||||++ |++|.+|+.+|.+++++++.|+++++|||+|.|+++||+|+|++++..........
T Consensus         3 ~~v~~~~--~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~   79 (258)
T PRK09076          3 IELDLEI--DGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVARE   79 (258)
T ss_pred             eEEEEEE--ECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHH
Confidence            3578888  89999999999986 99999999999999999999999999999999877999999999865322111111


Q ss_pred             hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE  228 (269)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~  228 (269)
                      . ...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..++++
T Consensus        80 ~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~  158 (258)
T PRK09076         80 M-ARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKR  158 (258)
T ss_pred             H-HHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHH
Confidence            1 112446677899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |+++|+.++|+||+++||||+|+|++++.+++.+++++++
T Consensus       159 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~  198 (258)
T PRK09076        159 MILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVA  198 (258)
T ss_pred             HHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999886

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.4e-47  Score=336.35  Aligned_cols=200  Identities=28%  Similarity=0.369  Sum_probs=178.4

Q ss_pred             CCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc--
Q 024304           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY--  143 (269)
Q Consensus        66 ~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~--  143 (269)
                      +.++.|.+++  +++|++|+||||+++|++|.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++.....  
T Consensus         3 ~~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~   79 (272)
T PRK06142          3 TTYESFTVEL--ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSG-KHFSYGIDLPAMAGVFGQL   79 (272)
T ss_pred             CCcceEEEEe--cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhhhcccc
Confidence            3567799998  999999999999999999999999999999999999999999999998 69999999998643110  


Q ss_pred             ------cchhhhh--hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHH
Q 024304          144 ------ADYENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSS  215 (269)
Q Consensus       144 ------~~~~~~~--~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~  215 (269)
                            .......  ...+.+++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~  159 (272)
T PRK06142         80 GKDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQ  159 (272)
T ss_pred             cccccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHH
Confidence                  0011111  11235667788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCC-CcHHHHHHHHHHhhc
Q 024304          216 IMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPV-SLFVAYLMSLTKCQA  268 (269)
Q Consensus       216 ~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~-e~l~~~a~~la~~la  268 (269)
                      +|++++|..++++|+++|++++|+||+++||||+|+|+ +++++.+.+++++++
T Consensus       160 ~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia  213 (272)
T PRK06142        160 RLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIA  213 (272)
T ss_pred             HHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999996 899999999999886

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1e-46  Score=332.83  Aligned_cols=195  Identities=35%  Similarity=0.539  Sum_probs=176.9

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~  147 (269)
                      ++.+.+++  +++|++|+||||+++|++|.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++.....  .+
T Consensus         3 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~--~~   77 (257)
T PRK05862          3 YETILVET--RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSE-KAFAAGADIKEMADLSF--MD   77 (257)
T ss_pred             CceEEEEe--eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CceECCcChHhHhccch--hH
Confidence            45688888  899999999999999999999999999999999999999999999998 69999999998753221  11


Q ss_pred             hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHH
Q 024304          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR  227 (269)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~  227 (269)
                      .. ...+..++..|..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..+++
T Consensus        78 ~~-~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  156 (257)
T PRK05862         78 VY-KGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAM  156 (257)
T ss_pred             HH-HHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHH
Confidence            11 11233466788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          228 EMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       228 ~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +|+++|+.++|+||+++||||+|+|++++++++.+++++++
T Consensus       157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~  197 (257)
T PRK05862        157 DLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIA  197 (257)
T ss_pred             HHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999886

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.7e-47  Score=334.14  Aligned_cols=195  Identities=27%  Similarity=0.337  Sum_probs=171.9

Q ss_pred             EEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhh
Q 024304           71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG  150 (269)
Q Consensus        71 v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~  150 (269)
                      |.+++  +++|++|+||||+++|+||.+|+.+|.++++++++|+++++|||+|.| ++||+|+|++++............
T Consensus         1 ~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~   77 (255)
T PRK06563          1 VSRER--RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHG-EHFTAGLDLADVAPKLAAGGFPFP   77 (255)
T ss_pred             CeEEE--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CCCcCCcCHHHHhhccccchhhhh
Confidence            35667  899999999999999999999999999999999999999999999998 699999999986432111111111


Q ss_pred             hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHH
Q 024304          151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW  230 (269)
Q Consensus       151 ~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~  230 (269)
                      ......+...+.++||||||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|..++++|+
T Consensus        78 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~  157 (255)
T PRK06563         78 EGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYL  157 (255)
T ss_pred             hhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHH
Confidence            11122233357899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          231 FLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       231 ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++|+.++++||+++||||+|+|.+++.+++.+++++|+
T Consensus       158 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  195 (255)
T PRK06563        158 LTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIA  195 (255)
T ss_pred             HcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999886

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-46  Score=333.23  Aligned_cols=199  Identities=28%  Similarity=0.416  Sum_probs=175.5

Q ss_pred             CCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc
Q 024304           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (269)
Q Consensus        66 ~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~  145 (269)
                      +.++.+.+++  +++|++|+||||+++|++|.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++.......
T Consensus         2 ~~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~   78 (263)
T PRK07799          2 EGGPHALVEQ--RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAG-GAFCAGMDLKAATKKPPGD   78 (263)
T ss_pred             CCCceEEEEE--ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccccCHHHHhhccccc
Confidence            3456789998  899999999999999999999999999999999999999999999998 7999999999875322111


Q ss_pred             h-h-h-hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhC
Q 024304          146 Y-E-N-FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVG  222 (269)
Q Consensus       146 ~-~-~-~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G  222 (269)
                      . . . .....+.. +..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|
T Consensus        79 ~~~~~~~~~~~~~~-~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG  157 (263)
T PRK07799         79 SFKDGSYDPSRIDA-LLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIP  157 (263)
T ss_pred             hhhhhhhhhhHHHH-HHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhC
Confidence            0 0 0 00111222 23567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       223 ~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ..++++|+++|++++|+||+++||||+|+|++++.+.+.+++++++
T Consensus       158 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~  203 (263)
T PRK07799        158 YTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELIN  203 (263)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999876

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-46  Score=333.99  Aligned_cols=202  Identities=25%  Similarity=0.369  Sum_probs=179.3

Q ss_pred             CCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc
Q 024304           65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA  144 (269)
Q Consensus        65 ~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~  144 (269)
                      ...|++|.++.. +++|++|+||||+++|++|.+|+.+|.+++++++.|+++++|||||.| ++||+|.|++++......
T Consensus         7 ~~~~~~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~   84 (268)
T PRK07327          7 YADYPALRFDRP-PPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEG-KAFSAGGDLALVEEMADD   84 (268)
T ss_pred             CCCCCeEEEEec-CCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCC-CCcccccCHHHHhhccCc
Confidence            445778888872 478999999999999999999999999999999999999999999999 699999999876432111


Q ss_pred             chh-hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCH
Q 024304          145 DYE-NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP  223 (269)
Q Consensus       145 ~~~-~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~  223 (269)
                      ... .........++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|.
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~  164 (268)
T PRK07327         85 FEVRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGM  164 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCH
Confidence            110 1011123466778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          224 KKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       224 ~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      .++++|+++|++++|+||+++||||+|+|.+++.+++.++|++|+
T Consensus       165 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  209 (268)
T PRK07327        165 AKAKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLA  209 (268)
T ss_pred             HHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999886

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-46  Score=334.63  Aligned_cols=198  Identities=31%  Similarity=0.482  Sum_probs=177.7

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh-
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE-  147 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~-  147 (269)
                      +.|.+++  +++|++|+||||+++|++|.+|+.+|.++++.+++|+++++|||+|.|+++||+|+|++.+......... 
T Consensus        11 ~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~   88 (269)
T PRK06127         11 GKLLAEK--TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAV   88 (269)
T ss_pred             CceEEEE--ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHH
Confidence            4578888  8999999999999999999999999999999999999999999999986799999999986432111111 


Q ss_pred             hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHH
Q 024304          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR  227 (269)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~  227 (269)
                      .........++..+..+||||||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|..+++
T Consensus        89 ~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  168 (269)
T PRK06127         89 AAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAK  168 (269)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHH
Confidence            11111234567789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          228 EMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       228 ~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +|+++|++++|+||+++||||+|+|.+++++++.++|++++
T Consensus       169 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~  209 (269)
T PRK06127        169 DLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIA  209 (269)
T ss_pred             HHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999886

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=100.00  E-value=1.4e-46  Score=331.97  Aligned_cols=199  Identities=35%  Similarity=0.551  Sum_probs=178.6

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~  146 (269)
                      .+..+.++.  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++.+........
T Consensus         3 ~~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g-~~FsaG~Dl~~~~~~~~~~~   79 (257)
T COG1024           3 TYETILVER--EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAG-KAFSAGADLKELLSPEDGNA   79 (257)
T ss_pred             CCCeeEEEe--eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhcccchhH
Confidence            456788888  788999999999999999999999999999999999999999999999 89999999999864111111


Q ss_pred             hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA  226 (269)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a  226 (269)
                      ........+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||.++|++|++|++++++|++|..++
T Consensus        80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a  159 (257)
T COG1024          80 AENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRA  159 (257)
T ss_pred             HHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHH
Confidence            11111223467889999999999999999999999999999999999999999999999999988999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCccceecCC-CcHHHHHHHHHHhhc
Q 024304          227 REMWFLARFYTAEEAEKMGLVNTVVPV-SLFVAYLMSLTKCQA  268 (269)
Q Consensus       227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~-e~l~~~a~~la~~la  268 (269)
                      ++|++||+.++++||+++||||++++. +++++.+.+++++++
T Consensus       160 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a  202 (257)
T COG1024         160 KELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLA  202 (257)
T ss_pred             HHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999985 799999999999986

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-46  Score=331.49  Aligned_cols=195  Identities=29%  Similarity=0.443  Sum_probs=174.8

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~  148 (269)
                      +.|.++.  +++|++|+||||+++|+||.+|+.+|.++++.++  +++++|||||.| ++||+|+|++++..........
T Consensus         2 ~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g-~~F~aG~Dl~~~~~~~~~~~~~   76 (255)
T PRK08150          2 SLVSYEL--DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEG-DHFCAGLDLSELRERDAGEGMH   76 (255)
T ss_pred             ceEEEEe--eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCC-CceecCcCHHHHhhccchhHHH
Confidence            3577888  8999999999999999999999999999999997  789999999998 6999999999875322111111


Q ss_pred             hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE  228 (269)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~  228 (269)
                      . ...+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|+++++++++|..++++
T Consensus        77 ~-~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~  155 (255)
T PRK08150         77 H-SRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTD  155 (255)
T ss_pred             H-HHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHH
Confidence            1 122456677899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      |+++|+.++|+||+++||||+|+|.+++.+++.+++++|+.
T Consensus       156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~  196 (255)
T PRK08150        156 MMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQ  196 (255)
T ss_pred             HHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999873

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-46  Score=332.17  Aligned_cols=198  Identities=31%  Similarity=0.513  Sum_probs=177.4

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~  148 (269)
                      +.|.+++. +++|++|+||||+++|++|.+|+.+|.+++++++.|+++++|||+|.|+++||+|+|++++..........
T Consensus         3 ~~v~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~   81 (260)
T PRK07657          3 QNISVDYV-TPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRH   81 (260)
T ss_pred             ceEEEEEc-cCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHH
Confidence            36777742 68999999999999999999999999999999999999999999999966999999999875322111111


Q ss_pred             hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE  228 (269)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~  228 (269)
                       ....+..++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|..++++
T Consensus        82 -~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~  160 (260)
T PRK07657         82 -AVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKE  160 (260)
T ss_pred             -HHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHH
Confidence             1122456778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |+++|++++++||+++||||+|+|.+++++.+.+++++++
T Consensus       161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~  200 (260)
T PRK07657        161 LIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIA  200 (260)
T ss_pred             HHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999886

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.5e-46  Score=332.10  Aligned_cols=195  Identities=32%  Similarity=0.421  Sum_probs=174.5

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~  147 (269)
                      ++.|.++.  +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++....... .
T Consensus         3 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~-~   79 (259)
T PRK06494          3 LPFSTVER--KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRG-W   79 (259)
T ss_pred             CceeEEEe--ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcch-h
Confidence            46788888  89999999999999999999999999999999999999999999999867999999999864322111 1


Q ss_pred             hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHH
Q 024304          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR  227 (269)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~  227 (269)
                      .  ...+..+. .+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..+++
T Consensus        80 ~--~~~~~~~~-~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~  156 (259)
T PRK06494         80 P--ESGFGGLT-SRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAM  156 (259)
T ss_pred             h--hHHHHHHH-HHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHH
Confidence            1  11122333 34589999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          228 EMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       228 ~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +|+++|+.++|+||+++||||+|+|++++++.+.+++++++
T Consensus       157 ~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  197 (259)
T PRK06494        157 GMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDIL  197 (259)
T ss_pred             HHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999886

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=100.00  E-value=1.9e-46  Score=330.82  Aligned_cols=194  Identities=29%  Similarity=0.471  Sum_probs=176.1

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~  148 (269)
                      ..|.++.  +++|++||||||+++|+||.+|+.+|.++++.+++|+++++|||+|.| ++||+|+|++++.....  ...
T Consensus         2 ~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~--~~~   76 (255)
T PRK09674          2 SELLVSR--QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNA-RFFAAGADLNEMAEKDL--AAT   76 (255)
T ss_pred             ceEEEEe--ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CceecccChHhHhccch--hhh
Confidence            3577787  899999999999999999999999999999999999999999999998 79999999998653211  111


Q ss_pred             hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE  228 (269)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~  228 (269)
                       .......++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..++++
T Consensus        77 -~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~  155 (255)
T PRK09674         77 -LNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQ  155 (255)
T ss_pred             -HHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence             1112345677889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |+++|+.++++||+++||||+|+|++++.+.+.+++++|+
T Consensus       156 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~  195 (255)
T PRK09674        156 MVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIA  195 (255)
T ss_pred             HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999886

>PLN02600 enoyl-CoA hydratase

Probab=100.00  E-value=1.5e-46  Score=330.78  Aligned_cols=190  Identities=30%  Similarity=0.497  Sum_probs=171.9

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHH
Q 024304           78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL  157 (269)
Q Consensus        78 ~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l  157 (269)
                      +++|++||||||+++|+||.+|+.+|.+++++++.|+++++|||+|.++++||+|+|++++..........+ ...+..+
T Consensus         2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~-~~~~~~~   80 (251)
T PLN02600          2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKF-VNSLRST   80 (251)
T ss_pred             CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHH-HHHHHHH
Confidence            689999999999999999999999999999999999999999999986579999999998753221111111 1224566


Q ss_pred             HHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCC
Q 024304          158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT  237 (269)
Q Consensus       158 ~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~  237 (269)
                      +..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..++++|+++|+.++
T Consensus        81 ~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~  160 (251)
T PLN02600         81 FSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIG  160 (251)
T ss_pred             HHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccC
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          238 AEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       238 a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++||+++||||+|+|.+++.+++.++|++|+
T Consensus       161 a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la  191 (251)
T PLN02600        161 AREAASMGLVNYCVPAGEAYEKALELAQEIN  191 (251)
T ss_pred             HHHHHHcCCCcEeeChhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999886

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.9e-46  Score=332.00  Aligned_cols=197  Identities=35%  Similarity=0.532  Sum_probs=175.3

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc-cch
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-ADY  146 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~-~~~  146 (269)
                      |+.+.++.  +++|++||||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++..... ...
T Consensus         3 ~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~   79 (262)
T PRK05995          3 YETLEIEQ--RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAG-KAFCAGADLNWMKKMAGYSDD   79 (262)
T ss_pred             CceEEEEe--eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CccccCcCHHHHhhhcccCch
Confidence            56788888  899999999999999999999999999999999999999999999999 69999999998643211 111


Q ss_pred             hhhh-hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHH
Q 024304          147 ENFG-RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK  225 (269)
Q Consensus       147 ~~~~-~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~  225 (269)
                      .... ...+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++ ++++++|..+
T Consensus        80 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~~  158 (262)
T PRK05995         80 ENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGERA  158 (262)
T ss_pred             hhhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHHH
Confidence            1111 1224567788999999999999999999999999999999999999999999999999988654 5899999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          226 AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +++|+++|++++|+||+++||||+|+|.+++.+++.+++++++
T Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  201 (262)
T PRK05995        159 ARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALV  201 (262)
T ss_pred             HHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999886

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.3e-46  Score=331.53  Aligned_cols=197  Identities=32%  Similarity=0.459  Sum_probs=176.0

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~  147 (269)
                      |+.+.++.  +++|++|+||||+++|++|.+|+.+|.+++++++ |+++++|||+|.| ++||+|.|++++.........
T Consensus         3 ~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~   78 (262)
T PRK08140          3 YETILLAI--EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAG-RGFCAGQDLADRDVTPGGAMP   78 (262)
T ss_pred             CceEEEEe--ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCC-CCcccCcChHHHhccccccch
Confidence            45688888  8999999999999999999999999999999999 9999999999999 699999999986432110001


Q ss_pred             h---hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHH
Q 024304          148 N---FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK  224 (269)
Q Consensus       148 ~---~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~  224 (269)
                      .   .....+..++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|..
T Consensus        79 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~  158 (262)
T PRK08140         79 DLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMA  158 (262)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHH
Confidence            1   1111133467788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          225 KAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       225 ~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++++|+++|++++++||+++||||+|+|.+++++.+.+++++|+
T Consensus       159 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia  202 (262)
T PRK08140        159 RALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLA  202 (262)
T ss_pred             HHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999886

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.7e-46  Score=332.72  Aligned_cols=199  Identities=27%  Similarity=0.459  Sum_probs=174.9

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~  146 (269)
                      +|+++.++.+ +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++........
T Consensus         3 ~~~~l~~~~~-~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~   80 (265)
T PRK05674          3 DFQTIELIRD-PRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRG-RHFSAGADLAWMQQSADLDY   80 (265)
T ss_pred             CcceEEEEEc-CCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhcccccc
Confidence            4778888872 378999999999999999999999999999999999999999999999 69999999998643211110


Q ss_pred             -hhh-hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHH
Q 024304          147 -ENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK  224 (269)
Q Consensus       147 -~~~-~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~  224 (269)
                       ... ....+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++ ++++++|..
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~  159 (265)
T PRK05674         81 NTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGER  159 (265)
T ss_pred             hhhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHH
Confidence             010 11124567788999999999999999999999999999999999999999999999999987655 588999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          225 KAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       225 ~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++++|+++|+.++|+||+++||||+|+|.+++.+.+.+++++++
T Consensus       160 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  203 (265)
T PRK05674        160 AARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLL  203 (265)
T ss_pred             HHHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999876

>PRK08139 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=3.4e-46  Score=331.00  Aligned_cols=199  Identities=34%  Similarity=0.441  Sum_probs=175.8

Q ss_pred             CCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc
Q 024304           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (269)
Q Consensus        66 ~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~  145 (269)
                      .....+.++.  +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.......
T Consensus         8 ~~~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~   84 (266)
T PRK08139          8 TEAPLLLRED--RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAG-KAFCAGHDLKEMRAARGLA   84 (266)
T ss_pred             ccCCceEEEe--eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCC-CcceeccCHHHHhcccchh
Confidence            3446788888  899999999999999999999999999999999999999999999999 6999999999865322111


Q ss_pred             hhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHH
Q 024304          146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK  225 (269)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~  225 (269)
                      ........+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++ .++|++++|..+
T Consensus        85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~  163 (266)
T PRK08139         85 YFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQ  163 (266)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHH
Confidence            1011111234667789999999999999999999999999999999999999999999999998764 568999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          226 AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +++|+++|++++|+||+++||||+|+|++++++.+.+++++|+
T Consensus       164 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  206 (266)
T PRK08139        164 AMEMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIA  206 (266)
T ss_pred             HHHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999886

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3e-46  Score=328.86  Aligned_cols=194  Identities=24%  Similarity=0.394  Sum_probs=174.8

Q ss_pred             eEEEEEEecC---CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304           70 DIIYEKAVGE---GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (269)
Q Consensus        70 ~v~~~~~~~~---gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~  146 (269)
                      .|.+++  ++   +|++|+||||+++|+||.+|+.+|.++++.+++|+++++|||+|.| ++||+|+|++++...... .
T Consensus         4 ~i~~~~--~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~-~   79 (251)
T PRK06023          4 HILVER--PGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTE-GCFSAGNDMQDFLAAAMG-G   79 (251)
T ss_pred             eEEEEe--ecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcCHHHHhhcccc-c
Confidence            477777  55   5999999999999999999999999999999999999999999998 699999999986432111 1


Q ss_pred             hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA  226 (269)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a  226 (269)
                      ... ...+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|+++++++++|..++
T Consensus        80 ~~~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a  158 (251)
T PRK06023         80 TSF-GSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRA  158 (251)
T ss_pred             hhh-HHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHH
Confidence            111 1124467778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++++++|+.++++||+++||||+|+|.+++.+++.+++++|+
T Consensus       159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~  200 (251)
T PRK06023        159 FALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELA  200 (251)
T ss_pred             HHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999886

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.1e-46  Score=329.77  Aligned_cols=195  Identities=29%  Similarity=0.372  Sum_probs=175.4

Q ss_pred             eEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhh
Q 024304           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF  149 (269)
Q Consensus        70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~  149 (269)
                      ++.+++  +++|++|+||||++ |++|.+|+.+|.++++++++|+++++|||+|.| ++||+|+|++++...........
T Consensus         3 ~i~~~~--~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~   78 (257)
T PRK07658          3 FLSVRV--EDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEG-RFFSAGADIKEFTSVTEAEQATE   78 (257)
T ss_pred             eEEEEe--eCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceEeCcCHHHHhccCchhhHHH
Confidence            678888  89999999999986 999999999999999999999999999999998 69999999998743221111111


Q ss_pred             hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHH
Q 024304          150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREM  229 (269)
Q Consensus       150 ~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l  229 (269)
                      .......++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|..++++|
T Consensus        79 ~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l  158 (257)
T PRK07658         79 LAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEM  158 (257)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHH
Confidence            11223567788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          230 WFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       230 ~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +++|++++++||+++||||+|+|.+++.+++.+++++++
T Consensus       159 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~  197 (257)
T PRK07658        159 MLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIA  197 (257)
T ss_pred             HHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999876

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.5e-46  Score=330.06  Aligned_cols=198  Identities=28%  Similarity=0.395  Sum_probs=177.9

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc-cch
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-ADY  146 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~-~~~  146 (269)
                      |+++.++.  +++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..... ...
T Consensus         1 ~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~   77 (255)
T PRK07260          1 FEHIIYEV--EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANG-KVFSVGGDLVEMKRAVDEDDV   77 (255)
T ss_pred             CCceEEEE--ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccccCHHHHHhhccccch
Confidence            35688888  899999999999999999999999999999999999999999999998 69999999998643111 111


Q ss_pred             hhh--hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHH
Q 024304          147 ENF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK  224 (269)
Q Consensus       147 ~~~--~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~  224 (269)
                      ...  ....+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++++++++++++|..
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~  157 (255)
T PRK07260         78 QSLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLN  157 (255)
T ss_pred             hhHHHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHH
Confidence            111  112245677789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          225 KAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       225 ~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++++|+++|++++|+||+++||||+++|.+++.+.+.+++++++
T Consensus       158 ~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  201 (255)
T PRK07260        158 RATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLR  201 (255)
T ss_pred             HHHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999886

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.3e-46  Score=335.85  Aligned_cols=198  Identities=35%  Similarity=0.486  Sum_probs=176.7

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccC-Ccc--
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRD-GYA--  144 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~-~~~--  144 (269)
                      |+.|.+++  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++... ...  
T Consensus         3 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~   79 (296)
T PRK08260          3 YETIRYDV--ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAG-RAFCAGADLSAGGNTFDLDAP   79 (296)
T ss_pred             cceEEEee--eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CCeecCcChHHhhhccccccc
Confidence            45788988  899999999999999999999999999999999999999999999998 799999999986420 000  


Q ss_pred             ------------ch-hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCC
Q 024304          145 ------------DY-ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAG  211 (269)
Q Consensus       145 ------------~~-~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~  211 (269)
                                  .. ..........+...+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~  159 (296)
T PRK08260         80 RTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEA  159 (296)
T ss_pred             ccccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCc
Confidence                        00 00111113456778899999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          212 YGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       212 g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +++++|++++|..++++|+++|++++|+||+++||||+|+|.+++.+.+.+++++++
T Consensus       160 g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~  216 (296)
T PRK08260        160 ASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIA  216 (296)
T ss_pred             chhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999886

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=100.00  E-value=3.2e-46  Score=329.52  Aligned_cols=194  Identities=30%  Similarity=0.432  Sum_probs=172.8

Q ss_pred             EEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh--h
Q 024304           71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE--N  148 (269)
Q Consensus        71 v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~--~  148 (269)
                      |.+++  +++|++|+||||+++|+||.+|+.+|.++++++++|+ +++|||+|.| ++||+|+|++++.........  .
T Consensus         1 ~~~e~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~   76 (256)
T TIGR02280         1 ILSAL--EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAG-RGFCAGQDLSERNPTPGGAPDLGR   76 (256)
T ss_pred             CeEEE--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCC-CCcccCcCHHHHhhccccchhHHH
Confidence            35677  8999999999999999999999999999999999999 9999999998 699999999986532111111  1


Q ss_pred             hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE  228 (269)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~  228 (269)
                      .....+..+...+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|..++++
T Consensus        77 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~  156 (256)
T TIGR02280        77 TIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMG  156 (256)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence            11111245667889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |+++|++++++||+++||||+|+|++++.+++.+++++++
T Consensus       157 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  196 (256)
T TIGR02280       157 LAMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLA  196 (256)
T ss_pred             HHHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999886

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK05869 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=3.1e-46  Score=322.99  Aligned_cols=188  Identities=27%  Similarity=0.444  Sum_probs=170.7

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHH
Q 024304           78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL  157 (269)
Q Consensus        78 ~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l  157 (269)
                      +++|++|+||||++ |+||.+|+.+|.+++++++.|+++++|||||.| ++||+|+|++++....... .......+.++
T Consensus        15 ~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~-~~~~~~~~~~~   91 (222)
T PRK05869         15 DAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGH-EIFSAGDDMPELRTLSAQE-ADTAARVRQQA   91 (222)
T ss_pred             cCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcCcCcCHHHHhccChhh-HHHHHHHHHHH
Confidence            58999999999986 999999999999999999999999999999988 6999999999865322111 11111224567


Q ss_pred             HHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCC
Q 024304          158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT  237 (269)
Q Consensus       158 ~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~  237 (269)
                      +.++.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++.++++++|..++++++++|++++
T Consensus        92 ~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~  171 (222)
T PRK05869         92 VDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFD  171 (222)
T ss_pred             HHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          238 AEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       238 a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |+||+++||||+|+|.+++.+++.+++++|+
T Consensus       172 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia  202 (222)
T PRK05869        172 AEEALALGLIDEMVAPDDVYDAAAAWARRFL  202 (222)
T ss_pred             HHHHHHCCCCCEeeCchHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999986

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.5e-46  Score=330.99  Aligned_cols=196  Identities=32%  Similarity=0.448  Sum_probs=175.4

Q ss_pred             eEEEEEEecCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc----
Q 024304           70 DIIYEKAVGEGIAKITINRPDRRNAFRP-HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA----  144 (269)
Q Consensus        70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~-~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~----  144 (269)
                      .+.++.  +++|++||||||+++|++|. +|+.+|.+++++++.|+++++|||+|.| ++||+|.|++++......    
T Consensus         4 ~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~   80 (266)
T PRK09245          4 FLLVER--DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAG-TAFSSGGNVKDMRARVGAFGGS   80 (266)
T ss_pred             ceEEEE--ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCHHHHhhcccccccc
Confidence            478888  89999999999999999995 9999999999999999999999999998 699999999987432110    


Q ss_pred             chh--hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhC
Q 024304          145 DYE--NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVG  222 (269)
Q Consensus       145 ~~~--~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G  222 (269)
                      ...  ......+..++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|+++++++++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG  160 (266)
T PRK09245         81 PADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIG  160 (266)
T ss_pred             chhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhh
Confidence            000  111112345677889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       223 ~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ..++++|+++|++++|+||+++||||+|+|.+++++.+.+++++|+
T Consensus       161 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~  206 (266)
T PRK09245        161 MARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIA  206 (266)
T ss_pred             HHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999886

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.7e-46  Score=327.97  Aligned_cols=195  Identities=32%  Similarity=0.465  Sum_probs=175.4

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~  148 (269)
                      +.+.++.. +++|++|+||||+++|+||.+|+.+|.++++.+++|+++++|||+|.| ++||+|+|++++.....  .. 
T Consensus         7 ~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~--~~-   81 (261)
T PRK08138          7 DVVLLERP-ADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGE-KVFAAGADIKEFATAGA--IE-   81 (261)
T ss_pred             CCEEEEEc-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CCeeCCcCHHHHhccch--hH-
Confidence            44666653 689999999999999999999999999999999999999999999988 69999999998653211  11 


Q ss_pred             hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE  228 (269)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~  228 (269)
                      .....+.+++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..++++
T Consensus        82 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~  161 (261)
T PRK08138         82 MYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMR  161 (261)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHH
Confidence            11122456778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |+++|+.++++||+++||||+|+|++++.+++.+++++++
T Consensus       162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~  201 (261)
T PRK08138        162 MALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIA  201 (261)
T ss_pred             HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998875

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=100.00  E-value=4.7e-46  Score=329.30  Aligned_cols=197  Identities=28%  Similarity=0.390  Sum_probs=176.9

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCC-CCceeccccccccccCCccc
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG-TEAFCSGGDQALRTRDGYAD  145 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g-~~~Fc~G~Dl~~~~~~~~~~  145 (269)
                      +++.+.++.  +++|++||||||+++|+||.+|+.+|.++++++++|+ +++|||+|.| +++||+|+|++++...... 
T Consensus         2 ~~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~-   77 (261)
T PRK11423          2 SMQYVNVVT--INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRD-   77 (261)
T ss_pred             CccceEEEe--ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcccc-
Confidence            356788888  8999999999999999999999999999999999988 9999999974 4799999999986432111 


Q ss_pred             hhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHH
Q 024304          146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK  225 (269)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~  225 (269)
                      .... ...+..++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++.++++++|..+
T Consensus        78 ~~~~-~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~  156 (261)
T PRK11423         78 PLSY-DDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHI  156 (261)
T ss_pred             HHHH-HHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHH
Confidence            1111 122456778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          226 AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +++|+++|++++|+||+++||||+|+|++++++.+.+++++++
T Consensus       157 a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~  199 (261)
T PRK11423        157 VKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHIS  199 (261)
T ss_pred             HHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999886

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=100.00  E-value=5.6e-46  Score=331.18  Aligned_cols=197  Identities=25%  Similarity=0.354  Sum_probs=173.6

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc----
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA----  144 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~----  144 (269)
                      ..+.++.  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++......    
T Consensus         8 ~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g-~~FcaG~Dl~~~~~~~~~~~~~   84 (275)
T PLN02664          8 EIIQKSP--NSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAG-DHFCSGIDLKTLNSISEQSSSG   84 (275)
T ss_pred             EEEEecC--CCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CceeeCcChHHhhhcccccccc
Confidence            4455555  899999999999999999999999999999999999999999999998 699999999986432110    


Q ss_pred             c--h--hhhh--hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHH
Q 024304          145 D--Y--ENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMS  218 (269)
Q Consensus       145 ~--~--~~~~--~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~  218 (269)
                      .  .  ....  ...+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~  164 (275)
T PLN02664         85 DRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLP  164 (275)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHH
Confidence            0  0  1111  11234567788999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCC-CcHHHHHHHHHHhhc
Q 024304          219 RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPV-SLFVAYLMSLTKCQA  268 (269)
Q Consensus       219 r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~-e~l~~~a~~la~~la  268 (269)
                      +++|..++++|+++|+.++|+||+++||||+|+|+ +++++.+.+++++|+
T Consensus       165 ~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia  215 (275)
T PLN02664        165 SIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIA  215 (275)
T ss_pred             HHhCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999995 889999999998886

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.7e-46  Score=327.11  Aligned_cols=192  Identities=33%  Similarity=0.453  Sum_probs=171.5

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~  148 (269)
                      +.+.+++  +++|++|+||||+++|++|.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++......  . 
T Consensus         3 ~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~--~-   76 (254)
T PRK08252          3 DEVLVER--RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAG-GTFCAGMDLKAFARGERP--S-   76 (254)
T ss_pred             ceEEEEE--ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CceEcCcCHHHHhcccch--h-
Confidence            3578888  899999999999999999999999999999999999999999999998 699999999987532111  1 


Q ss_pred             hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE  228 (269)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~  228 (269)
                      .....+..+.  ...+||||||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..++++
T Consensus        77 ~~~~~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~  154 (254)
T PRK08252         77 IPGRGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAME  154 (254)
T ss_pred             hhHHHHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHH
Confidence            1111122222  24799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |+++|++++++||+++||||+|+|++++.+++.+++++++
T Consensus       155 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~  194 (254)
T PRK08252        155 LALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIA  194 (254)
T ss_pred             HHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999886

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.8e-46  Score=327.77  Aligned_cols=196  Identities=30%  Similarity=0.433  Sum_probs=176.4

Q ss_pred             eEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc-c-chh
Q 024304           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-A-DYE  147 (269)
Q Consensus        70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~-~-~~~  147 (269)
                      ++.++.  +++|++|+||||++.|++|.+|+.+|.++++++++|+++++|||+|.| ++||+|.|++++..... . ...
T Consensus         4 ~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~   80 (260)
T PRK07511          4 ELLSRR--EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAG-GFFCAGGNLNRLLENRAKPPSVQ   80 (260)
T ss_pred             eeEEEe--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCC-CCcccCcCHHHHhhcccccchhH
Confidence            477887  899999999999999999999999999999999999999999999998 69999999998653211 1 111


Q ss_pred             hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHH
Q 024304          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR  227 (269)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~  227 (269)
                      ......+.+++..+.++|||+||+|+|+|+|||++|+++||+||++++++|++||.++|++|++|+++++++++|..+++
T Consensus        81 ~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~  160 (260)
T PRK07511         81 AASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLAT  160 (260)
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHH
Confidence            11112346677889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          228 EMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       228 ~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +|+++|++++++||+++||||+|+|.+++.+++.+++++++
T Consensus       161 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~  201 (260)
T PRK07511        161 ELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLA  201 (260)
T ss_pred             HHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998875

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.2e-46  Score=331.02  Aligned_cols=201  Identities=30%  Similarity=0.408  Sum_probs=175.7

Q ss_pred             CCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc-
Q 024304           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA-  144 (269)
Q Consensus        66 ~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~-  144 (269)
                      .+++.|.++.. +++|++|+||||+++|++|.+|+.+|.++++++++|+++++|||+|.| ++||+|+|++++...... 
T Consensus         6 ~~~~~v~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~~~~   83 (276)
T PRK05864          6 STMSLVLVDHP-RPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAG-RGFSSGADHKSAGVVPHVE   83 (276)
T ss_pred             CCCCceEEeee-cCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcchhhhhcccccc
Confidence            34566777753 689999999999999999999999999999999999999999999998 699999999976421100 


Q ss_pred             ---chhhh--hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCC-CChHHHHHH
Q 024304          145 ---DYENF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFD-AGYGSSIMS  218 (269)
Q Consensus       145 ---~~~~~--~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p-~~g~~~~l~  218 (269)
                         .....  ....+..++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++| ++|++++|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~  163 (276)
T PRK05864         84 GLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLP  163 (276)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehH
Confidence               00100  111234566788899999999999999999999999999999999999999999999997 677889999


Q ss_pred             hhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          219 RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       219 r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +++|..++++|+++|++++|+||+++||||+|+|++++++++.++|++|+
T Consensus       164 ~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  213 (276)
T PRK05864        164 RAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMA  213 (276)
T ss_pred             hhhCHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999986

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.6e-46  Score=328.85  Aligned_cols=199  Identities=29%  Similarity=0.414  Sum_probs=178.0

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCC-CceEEEEEcCCCCceeccccccccccCCccc
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDS-SVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~-~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~  145 (269)
                      +|+.+.+++  +++|++|+||||+++|++|.+|+.+|.++++.++.|+ ++++|||+|.| ++||+|+|++++.......
T Consensus         2 ~~~~v~~~~--~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~   78 (266)
T PRK05981          2 QFKKVTLDF--DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG-RGFCTGANLQGRGSGGRES   78 (266)
T ss_pred             CcceEEEEe--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CCcccccCHHhhhcccccc
Confidence            467789998  8999999999999999999999999999999999876 59999999998 6999999999865321110


Q ss_pred             ----h-hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhh
Q 024304          146 ----Y-ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL  220 (269)
Q Consensus       146 ----~-~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~  220 (269)
                          . .......+.+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~  158 (266)
T PRK05981         79 DSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRL  158 (266)
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHH
Confidence                1 11111224567788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       221 ~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +|...+++|+++|++++|+||+++||||+|+|.+++++.+.+++++++
T Consensus       159 vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~  206 (266)
T PRK05981        159 VGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELA  206 (266)
T ss_pred             hHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999886

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.8e-46  Score=329.79  Aligned_cols=199  Identities=35%  Similarity=0.493  Sum_probs=177.0

Q ss_pred             CcceEEEEEEecC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc
Q 024304           67 EFTDIIYEKAVGE-GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (269)
Q Consensus        67 ~~~~v~~~~~~~~-gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~  145 (269)
                      .|+.|.++.  ++ +|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.......
T Consensus         3 ~~~~i~~~~--~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~   79 (272)
T PRK06210          3 AYDAVLYEV--ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAG-RGFCAGADMGELQTIDPSD   79 (272)
T ss_pred             CcceEEEEE--CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCC-CCcccccCHHHHhccCccc
Confidence            456789988  88 9999999999999999999999999999999999999999999998 6999999999864321110


Q ss_pred             hh------hhhh---hhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHH
Q 024304          146 YE------NFGR---LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI  216 (269)
Q Consensus       146 ~~------~~~~---~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~  216 (269)
                      ..      ....   ..+.+++..+..+||||||+|+|+|+|||++|+++||+||++++++|++||.++|++|++|++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~  159 (272)
T PRK06210         80 GRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWI  159 (272)
T ss_pred             ccccccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhh
Confidence            00      0100   11234567888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          217 MSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       217 l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +++++|..++++|+++|+.++|+||+++||||+|+|.+++++.+.+++++++
T Consensus       160 l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~  211 (272)
T PRK06210        160 LPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLA  211 (272)
T ss_pred             hHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999886

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=100.00  E-value=1.2e-45  Score=326.79  Aligned_cols=194  Identities=32%  Similarity=0.447  Sum_probs=174.1

Q ss_pred             eEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhh
Q 024304           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF  149 (269)
Q Consensus        70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~  149 (269)
                      .+.+++  +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++....... ...
T Consensus         4 ~i~~~~--~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-~~~   79 (261)
T PRK03580          4 SLHTTR--NGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-ADF   79 (261)
T ss_pred             eEEEEE--ECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch-hhh
Confidence            478888  8999999999996 599999999999999999999999999999999877999999999865322111 111


Q ss_pred             hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHH
Q 024304          150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREM  229 (269)
Q Consensus       150 ~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l  229 (269)
                      . .....++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|..+++++
T Consensus        80 ~-~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l  158 (261)
T PRK03580         80 G-PGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEM  158 (261)
T ss_pred             h-hhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHH
Confidence            1 112345668889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          230 WFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       230 ~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +++|+.++|+||+++||||+|+|.+++.+.+.+++++|+
T Consensus       159 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  197 (261)
T PRK03580        159 VMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLV  197 (261)
T ss_pred             HHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999886

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-45  Score=326.68  Aligned_cols=195  Identities=37%  Similarity=0.519  Sum_probs=178.0

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~  148 (269)
                      ..+.+++  +++|++|+||||++.|++|.+|+.+|.++++++++|+++++|||+|.| ++||+|+|++++....... ..
T Consensus         5 ~~i~~~~--~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~-~~   80 (259)
T PRK06688          5 TDLLVEL--EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAG-RAFSAGGDIKDFPKAPPKP-PD   80 (259)
T ss_pred             CceEEEE--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCccCHHHHhccCcch-HH
Confidence            4688888  899999999999999999999999999999999999999999999999 6999999999875422111 11


Q ss_pred             hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE  228 (269)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~  228 (269)
                       ....+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|+++++++++|..++++
T Consensus        81 -~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~  159 (259)
T PRK06688         81 -ELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAE  159 (259)
T ss_pred             -HHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHH
Confidence             1223467788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |+++|++++++||+++||||+|+|.+++.+.+.+++++++
T Consensus       160 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~  199 (259)
T PRK06688        160 MLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLA  199 (259)
T ss_pred             HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998876

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1e-45  Score=325.90  Aligned_cols=194  Identities=31%  Similarity=0.429  Sum_probs=171.5

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~  148 (269)
                      +.|.++.  +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..... ..  
T Consensus         3 ~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g-~~FcaG~Dl~~~~~~~~-~~--   76 (254)
T PRK08259          3 MSVRVER--NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAG-GTFCAGADLKAVGTGRG-NR--   76 (254)
T ss_pred             ceEEEEE--ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCCcChHHHhcccc-hh--
Confidence            3478888  899999999999999999999999999999999999999999999998 69999999998653211 11  


Q ss_pred             hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE  228 (269)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~  228 (269)
                      ........+...+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|+.|.++++++|++++|..++++
T Consensus        77 ~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~  156 (254)
T PRK08259         77 LHPSGDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMD  156 (254)
T ss_pred             hhhhhcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHH
Confidence            10000111122334799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |+++|+.++|+||+++||||+|+|.+++++.+.++|++|+
T Consensus       157 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  196 (254)
T PRK08259        157 LILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELA  196 (254)
T ss_pred             HHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999886

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.2e-45  Score=327.72  Aligned_cols=197  Identities=29%  Similarity=0.445  Sum_probs=175.7

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCC-ccchh
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG-YADYE  147 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~-~~~~~  147 (269)
                      +.+.++.  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++.... .....
T Consensus        17 ~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~~~~~~   93 (277)
T PRK08258         17 RHFLWEV--DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAG-GNFCSGGDVHEIIGPLTKMDMP   93 (277)
T ss_pred             cceEEEE--ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCC-CCcccccCHHHHhccccccChh
Confidence            4788888  899999999999999999999999999999999999999999999998 6999999999864211 01111


Q ss_pred             hh--hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCC-CChHHHHHHhhhCHH
Q 024304          148 NF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFD-AGYGSSIMSRLVGPK  224 (269)
Q Consensus       148 ~~--~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p-~~g~~~~l~r~~G~~  224 (269)
                      ..  ....+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++| ++|++++|++++|..
T Consensus        94 ~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~  173 (277)
T PRK08258         94 ELLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQG  173 (277)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHH
Confidence            11  111234677889999999999999999999999999999999999999999999999995 678899999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          225 KAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       225 ~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++++|+++|++++|+||+++||||+|+|.+++++.+.+++++|+
T Consensus       174 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  217 (277)
T PRK08258        174 RASELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLA  217 (277)
T ss_pred             HHHHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999886

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.2e-46  Score=326.02  Aligned_cols=193  Identities=32%  Similarity=0.432  Sum_probs=173.1

Q ss_pred             eEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhh
Q 024304           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF  149 (269)
Q Consensus        70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~  149 (269)
                      .+.++.  +++|++|+||||+++|+||.+|+.+|.++++.+++|+++++|||+|.| ++||+|+|++++...........
T Consensus         4 ~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~   80 (249)
T PRK05870          4 PVLLDV--DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAG-KAFCAGADLTALGAAPGRPAEDG   80 (249)
T ss_pred             cEEEEc--cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCeecCcChHHHhcccccchHHH
Confidence            477887  899999999999999999999999999999999999999999999998 69999999998754221111111


Q ss_pred             hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHH
Q 024304          150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREM  229 (269)
Q Consensus       150 ~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l  229 (269)
                      . ..+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|+++++++++|..++++|
T Consensus        81 ~-~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l  159 (249)
T PRK05870         81 L-RRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAA  159 (249)
T ss_pred             H-HHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHH
Confidence            1 123455667889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          230 WFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       230 ~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +++|+.++++||+++||||+|+  +++.+++.+++++++
T Consensus       160 ~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la  196 (249)
T PRK05870        160 LLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPA  196 (249)
T ss_pred             HHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHH
Confidence            9999999999999999999999  789999999999886

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-45  Score=326.18  Aligned_cols=197  Identities=31%  Similarity=0.512  Sum_probs=172.8

Q ss_pred             cceEEEEEEec-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc-cc
Q 024304           68 FTDIIYEKAVG-EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-AD  145 (269)
Q Consensus        68 ~~~v~~~~~~~-~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~-~~  145 (269)
                      |+.+.+++  + ++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|.|++++..... ..
T Consensus         3 ~~~~~~~~--~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~   79 (262)
T PRK07468          3 FETIRIAV--DARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAG-KSFCAGGDLGWMRAQMTADR   79 (262)
T ss_pred             cceEEEEE--cCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CcccCCcCHHHHHhhcccch
Confidence            45678887  5 69999999999999999999999999999999999999999999998 69999999998642111 11


Q ss_pred             hhhh-hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHH
Q 024304          146 YENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK  224 (269)
Q Consensus       146 ~~~~-~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~  224 (269)
                      .... ....+..++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++++++++ +++|..
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~  158 (262)
T PRK07468         80 ATRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEA  158 (262)
T ss_pred             hhHHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHH
Confidence            1111 11224567788999999999999999999999999999999999999999999999999999888744 559999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          225 KAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       225 ~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++++|+++|++++++||+++||||+|+|.+++++.+.+++++++
T Consensus       159 ~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~  202 (262)
T PRK07468        159 NARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYL  202 (262)
T ss_pred             HHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998876

>PLN02888 enoyl-CoA hydratase

Probab=100.00  E-value=2.3e-45  Score=325.54  Aligned_cols=194  Identities=37%  Similarity=0.483  Sum_probs=173.7

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~  148 (269)
                      +.|.++.. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++......  . 
T Consensus         9 ~~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~--~-   83 (265)
T PLN02888          9 NLILVPKS-RNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSG-RAFCSGVDLTAAEEVFKG--D-   83 (265)
T ss_pred             CeEEEEec-cCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CcccCCCCHHHHHhhccc--h-
Confidence            45667642 689999999999999999999999999999999999999999999998 699999999875421110  0 


Q ss_pred             hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE  228 (269)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~  228 (269)
                      . .....+++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..++++
T Consensus        84 ~-~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~  162 (265)
T PLN02888         84 V-KDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRARE  162 (265)
T ss_pred             h-hHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHH
Confidence            0 011234566788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |+++|++++|+||+++||||+|+|.+++.+++.+++++++
T Consensus       163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  202 (265)
T PLN02888        163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAII  202 (265)
T ss_pred             HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999886

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.9e-45  Score=322.18  Aligned_cols=194  Identities=27%  Similarity=0.367  Sum_probs=177.1

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~  147 (269)
                      ++.+.++.  +++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||+|.| ++||+|.|++++..... ...
T Consensus         4 ~~~~~~~~--~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~-~~~   79 (249)
T PRK07110          4 KVVELREV--EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYP-NYFATGGTQEGLLSLQT-GKG   79 (249)
T ss_pred             CceEEEEe--eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCeeCCcChHHHhhccc-hhh
Confidence            46778888  899999999999999999999999999999999999999999999998 69999999988643221 111


Q ss_pred             hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHH
Q 024304          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR  227 (269)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~  227 (269)
                      .+.   ..+++..+.++|||+||+|+|+|+|||++|+++||+||++++++|++||.++|++|++++++++++++|..+++
T Consensus        80 ~~~---~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~  156 (249)
T PRK07110         80 TFT---EANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQ  156 (249)
T ss_pred             hHh---hHHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHH
Confidence            111   14677889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          228 EMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       228 ~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +|+++|++++++||+++||||+|+|++++.+++.+++++++
T Consensus       157 ~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  197 (249)
T PRK07110        157 EMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLA  197 (249)
T ss_pred             HHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999886

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-45  Score=325.55  Aligned_cols=197  Identities=23%  Similarity=0.349  Sum_probs=175.6

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~  146 (269)
                      +++.+.++.  +++|++|+||||+++|++|.+|+.+|.++++++ .|+++++|||+|.| ++||+|+|++++........
T Consensus         4 ~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~~~~~~   79 (260)
T PRK07659          4 KMESVVVKY--EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNG-RGFSAGGDIKMMLSSNDESK   79 (260)
T ss_pred             CCceEEEEe--eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCC-CCcccccCHHHHhhccCchh
Confidence            345788988  899999999999999999999999999999999 58899999999998 69999999998753221111


Q ss_pred             hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA  226 (269)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a  226 (269)
                      .......+.+++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..++
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a  159 (260)
T PRK07659         80 FDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKA  159 (260)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHH
Confidence            11111234567778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++|+++|+.++|+||+++||||+|+ ++++.+++.+++++|+
T Consensus       160 ~~l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~  200 (260)
T PRK07659        160 KQIIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWL  200 (260)
T ss_pred             HHHHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999 7889999999999886

>PRK08321 naphthoate synthase; Validated

Probab=100.00  E-value=4.8e-45  Score=328.96  Aligned_cols=202  Identities=53%  Similarity=0.898  Sum_probs=175.9

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCC------Cceecccccccccc
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT------EAFCSGGDQALRTR  140 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~------~~Fc~G~Dl~~~~~  140 (269)
                      .+.+|.+++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+      ++||+|+|++.+..
T Consensus        21 ~~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~  100 (302)
T PRK08321         21 DFTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGR  100 (302)
T ss_pred             CceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhcc
Confidence            466788876446889999999999999999999999999999999999999999999883      69999999987532


Q ss_pred             CCc-----c--ch-h--hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEe-CCceEecCCCCcccCC
Q 024304          141 DGY-----A--DY-E--NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFD  209 (269)
Q Consensus       141 ~~~-----~--~~-~--~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~-~~a~f~~~~~~~Gl~p  209 (269)
                      ...     .  .. .  ........++...+..+|||+||+|||+|+|||++|+++||+||++ ++++|++||.++|++|
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p  180 (302)
T PRK08321        101 DGYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFD  180 (302)
T ss_pred             ccccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCC
Confidence            110     0  00 0  0111112345667889999999999999999999999999999999 6899999999999999


Q ss_pred             CChHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          210 AGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       210 ~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +++++.+|++++|..++++|+++|+.++|+||+++||||+++|++++++++.+++++|+
T Consensus       181 ~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  239 (302)
T PRK08321        181 GGYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREIN  239 (302)
T ss_pred             CchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999886

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1e-44  Score=320.99  Aligned_cols=196  Identities=30%  Similarity=0.423  Sum_probs=171.5

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~  147 (269)
                      ++.+.+++  +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.........
T Consensus         2 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~   78 (262)
T PRK07509          2 MDRVSVTI--EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEG-GAFCAGLDVKSVASSPGNAVK   78 (262)
T ss_pred             CceEEEEe--eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCcCCCcCHHHHhcccchhhh
Confidence            35688888  999999999999999999999999999999999999999999999998 699999999986532111111


Q ss_pred             hhhh------hhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhh
Q 024304          148 NFGR------LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV  221 (269)
Q Consensus       148 ~~~~------~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~  221 (269)
                      ....      ..+.++...+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|+++++++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~  158 (262)
T PRK07509         79 LLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLV  158 (262)
T ss_pred             hHhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHh
Confidence            1100      1123455677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          222 GPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       222 G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |..++++|+++|++++|+||+++||||+|++  ++.+.+.+++++++
T Consensus       159 g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~  203 (262)
T PRK07509        159 RKDVARELTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIA  203 (262)
T ss_pred             CHHHHHHHHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHH
Confidence            9999999999999999999999999999995  36778888888775

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=100.00  E-value=3.3e-45  Score=320.96  Aligned_cols=192  Identities=38%  Similarity=0.613  Sum_probs=175.7

Q ss_pred             EEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhh
Q 024304           73 YEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRL  152 (269)
Q Consensus        73 ~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~  152 (269)
                      |+.  +++|++|+||||++.|+||.+|+.+|.++|+.++.|+++++||++|.+ ++||+|.|++++.... .........
T Consensus         2 ~~~--~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~-~~F~~G~Dl~~~~~~~-~~~~~~~~~   77 (245)
T PF00378_consen    2 YEI--EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGG-KAFCAGADLKEFLNSD-EEEAREFFR   77 (245)
T ss_dssp             EEE--ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEEST-SESBESB-HHHHHHHH-HHHHHHHHH
T ss_pred             EEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecc-cccccccchhhhhccc-cccccccch
Confidence            566  899999999999999999999999999999999999999999999987 6999999999876541 111112233


Q ss_pred             hHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHc
Q 024304          153 NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFL  232 (269)
Q Consensus       153 ~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~lt  232 (269)
                      .+..++..+..+|||+||+|+|+|+|||++|+++||+||+++++.|++||.++|++|+++++.+|+|++|..++++++++
T Consensus        78 ~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~  157 (245)
T PF00378_consen   78 RFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLT  157 (245)
T ss_dssp             HHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccc
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          233 ARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       233 g~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |++++|+||+++||||+|+|++++.+.+.+++++++
T Consensus       158 g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~  193 (245)
T PF00378_consen  158 GEPISAEEALELGLVDEVVPDEELDEEALELAKRLA  193 (245)
T ss_dssp             TCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHH
T ss_pred             cccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHh
Confidence            999999999999999999999999999999999986

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-44  Score=319.58  Aligned_cols=194  Identities=28%  Similarity=0.417  Sum_probs=171.2

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~  147 (269)
                      |+.|.+++  +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.........
T Consensus         3 ~~~i~~~~--~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~~~   78 (257)
T PRK06495          3 MSQLKLEV--SDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAG-KVFCAGADLKGRPDVIKGPGD   78 (257)
T ss_pred             cceEEEEe--eCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCcccCcCHHhHhhccCCchh
Confidence            45788888  8999999999998 4999999999999999999999999999999998 699999999986432111111


Q ss_pred             -hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304          148 -NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA  226 (269)
Q Consensus       148 -~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a  226 (269)
                       .........+...+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|+.   ++++++++++|..++
T Consensus        79 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a  155 (257)
T PRK06495         79 LRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT  155 (257)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence             1111223566778999999999999999999999999999999999999999999999997   456789999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++|+++|++++|+||+++||||+++|++++.+.+.+++++++
T Consensus       156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~  197 (257)
T PRK06495        156 RRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIA  197 (257)
T ss_pred             HHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999886

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1.4e-44  Score=335.11  Aligned_cols=197  Identities=19%  Similarity=0.269  Sum_probs=171.3

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc-
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD-  145 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~-  145 (269)
                      ...+|.+++  +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++....... 
T Consensus        35 ~~~~V~~e~--~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~G-kaFcAGgDl~~l~~~~~~~~  111 (401)
T PLN02157         35 LDYQVLVEG--SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSG-RAFCAGGDIVSLYHLRKRGS  111 (401)
T ss_pred             CCCceEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCccCCcCHHHHHhhccccc
Confidence            346688888  899999999999999999999999999999999999999999999999 7999999999875321111 


Q ss_pred             hhhhh--hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCH
Q 024304          146 YENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP  223 (269)
Q Consensus       146 ~~~~~--~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~  223 (269)
                      .....  ....+.+...|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.
T Consensus       112 ~~~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~  191 (401)
T PLN02157        112 PDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR  191 (401)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH
Confidence            11011  1112345677899999999999999999999999999999999999999999999999999999999999996


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          224 KKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       224 ~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                       .+++|++||+.++|+||+++||||++||.+++ +.+.+++++++
T Consensus       192 -~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~  234 (401)
T PLN02157        192 -LGEYLGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLL  234 (401)
T ss_pred             -HHHHHHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHH
Confidence             89999999999999999999999999999998 45557766653

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-44  Score=317.35  Aligned_cols=186  Identities=26%  Similarity=0.323  Sum_probs=164.9

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHH
Q 024304           78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL  157 (269)
Q Consensus        78 ~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l  157 (269)
                      +++|++|+||||++ |+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++...............+..+
T Consensus         9 ~~~v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   86 (249)
T PRK07938          9 EPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEG-RGFNAGVDIKELQATPGFTALIDANRGCFAA   86 (249)
T ss_pred             CCCEEEEEECCCCc-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCC-CceecCcCHHHHhhccchhHHHHHHHHHHHH
Confidence            78999999999985 999999999999999999999999999999998 6999999998864321111100011123456


Q ss_pred             HHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCC
Q 024304          158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT  237 (269)
Q Consensus       158 ~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~  237 (269)
                      +..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++   +++.+|++++|..++++|+++|+.++
T Consensus        87 ~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg~~~~  163 (249)
T PRK07938         87 FRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAATIT  163 (249)
T ss_pred             HHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhCCcCC
Confidence            778899999999999999999999999999999999999999999999986   45678999999999999999999999


Q ss_pred             HHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          238 AEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       238 a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |+||+++||||+|+|++++++++.+++++|+
T Consensus       164 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  194 (249)
T PRK07938        164 AAELHHFGSVEEVVPRDQLDEAALEVARKIA  194 (249)
T ss_pred             HHHHHHCCCccEEeCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999886

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.4e-44  Score=322.40  Aligned_cols=197  Identities=36%  Similarity=0.531  Sum_probs=172.1

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc---
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY---  143 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~---  143 (269)
                      +++.|.++.  +++|++|+||||+++|+||.+|+.+|.++++++++|+++++|||||.| ++||+|+|++++.....   
T Consensus         2 ~~~~v~~~~--~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G-~~FcaG~Dl~~~~~~~~~~~   78 (288)
T PRK08290          2 EYEYVRYEV--AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAG-KHFSAGHDLGSGTPGRDRDP   78 (288)
T ss_pred             CCceEEEEe--eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CccccCCCcccccccccccc
Confidence            356788988  899999999999999999999999999999999999999999999999 69999999997632110   


Q ss_pred             ---------------cchh-hhh--hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCc
Q 024304          144 ---------------ADYE-NFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV  205 (269)
Q Consensus       144 ---------------~~~~-~~~--~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~  205 (269)
                                     .... ...  ...+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~l  158 (288)
T PRK08290         79 GPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRM  158 (288)
T ss_pred             ccccccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccccc
Confidence                           0000 010  0123456678899999999999999999999999999999999999999999999


Q ss_pred             ccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          206 GSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       206 Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |+ |+ .+++++++++|..++++|++||+.++|+||+++||||+|+|.+++++.+.+++++|+
T Consensus       159 Gl-~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la  219 (288)
T PRK08290        159 GI-PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIA  219 (288)
T ss_pred             Cc-Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHH
Confidence            98 43 456778999999999999999999999999999999999999999999999999886

>PRK08788 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=3.7e-44  Score=320.13  Aligned_cols=197  Identities=24%  Similarity=0.282  Sum_probs=169.3

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhc-----CCCceEEEEEcCCCCceeccccccccccC-C
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARD-----DSSVGVIILTGKGTEAFCSGGDQALRTRD-G  142 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~-----d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~-~  142 (269)
                      ..|.++.  +++|++|+|| |+++|+||.+|+.+|.+++++++.     |+++++|||+|.++++||+|+|++++... .
T Consensus        17 ~~i~~e~--~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~   93 (287)
T PRK08788         17 LRVYYEE--ERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIR   93 (287)
T ss_pred             eEEEEEc--cCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhcc
Confidence            3456665  8999999996 999999999999999999999998     89999999999944799999999986421 1


Q ss_pred             ccchhhhhh--hhHHHHHHHHh---cCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHH
Q 024304          143 YADYENFGR--LNVLDLQVQIR---RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIM  217 (269)
Q Consensus       143 ~~~~~~~~~--~~~~~l~~~i~---~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l  217 (269)
                      .........  ..+.+.+..+.   .+|||+||+|+|+|+|||++|+++||+||++++++|++||+++|++|++|+++++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l  173 (287)
T PRK08788         94 AGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFL  173 (287)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHH
Confidence            111111111  11222233333   7999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          218 SRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       218 ~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++++|..++++|+++|+.++|+||+++||||+++|.+++.+++.+++++|+
T Consensus       174 ~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia  224 (287)
T PRK08788        174 ARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSK  224 (287)
T ss_pred             HHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999987

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-44  Score=325.16  Aligned_cols=198  Identities=29%  Similarity=0.422  Sum_probs=172.6

Q ss_pred             CCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc
Q 024304           65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA  144 (269)
Q Consensus        65 ~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~  144 (269)
                      ..+|+.|.++.  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++......
T Consensus         6 ~~~~~~v~~e~--~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G-~~FcaG~Dl~~~~~~~~~   82 (302)
T PRK08272          6 LDNLKTMTYEV--TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAG-KGFCAGYDLSAYAEGSSS   82 (302)
T ss_pred             cCCCCeEEEEe--ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCcCHHHHhhcccc
Confidence            45678899998  899999999999999999999999999999999999999999999999 699999999886432110


Q ss_pred             c---h--------------hhhh-------hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEec
Q 024304          145 D---Y--------------ENFG-------RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ  200 (269)
Q Consensus       145 ~---~--------------~~~~-------~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~  200 (269)
                      .   .              ..+.       ......++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~  162 (302)
T PRK08272         83 GGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGY  162 (302)
T ss_pred             cccccccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecC
Confidence            0   0              0000       11234566788899999999999999999999999999999999999999


Q ss_pred             CCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          201 TGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       201 ~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ||.++|.+|+.   ..+++++|..+|++|++||++++|+||+++||||+|+|.+++++++.++|++|+
T Consensus       163 pe~~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia  227 (302)
T PRK08272        163 PPTRVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIA  227 (302)
T ss_pred             cchhcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHH
Confidence            99998666643   367889999999999999999999999999999999999999999999999986

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=100.00  E-value=3.6e-44  Score=319.77  Aligned_cols=200  Identities=18%  Similarity=0.288  Sum_probs=174.6

Q ss_pred             CCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCC-CceeccccccccccCCcc
Q 024304           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT-EAFCSGGDQALRTRDGYA  144 (269)
Q Consensus        66 ~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~-~~Fc~G~Dl~~~~~~~~~  144 (269)
                      ...+.|.+++. +++|++|+||||+ .|+||.+|+.+|.++++++++|+++++|||||.|+ ++||+|+|++++......
T Consensus         8 ~~~~~i~~~~~-~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~   85 (278)
T PLN03214          8 GATPGVRVDRR-PGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTS   85 (278)
T ss_pred             CCCCceEEEEc-CCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccc
Confidence            34457888762 4889999999985 69999999999999999999999999999999873 699999999986421111


Q ss_pred             ch--hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCccc-CCCChHHHHHHhhh
Q 024304          145 DY--ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGS-FDAGYGSSIMSRLV  221 (269)
Q Consensus       145 ~~--~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl-~p~~g~~~~l~r~~  221 (269)
                      ..  ..+ .....+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||.++|+ +|++++++++++++
T Consensus        86 ~~~~~~~-~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~  164 (278)
T PLN03214         86 AARYAEF-WLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVI  164 (278)
T ss_pred             hHHHHHH-HHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhc
Confidence            11  111 111245667889999999999999999999999999999999999999999999999 59898999999999


Q ss_pred             CHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          222 GPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       222 G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |..++++|+++|+.++++||+++||||+|+|.+++.+.+.+++++|+
T Consensus       165 G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~  211 (278)
T PLN03214        165 DRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERAL  211 (278)
T ss_pred             CHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999886

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.1e-44  Score=321.15  Aligned_cols=194  Identities=28%  Similarity=0.398  Sum_probs=165.2

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccc-ccc----C-
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQAL-RTR----D-  141 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~-~~~----~-  141 (269)
                      |+.+.++.  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|+++ +..    . 
T Consensus         4 ~~~v~~~~--~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G-~~FcaG~Dl~~~~~~~~~~~~   80 (298)
T PRK12478          4 FQTLLYTT--AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAG-RAFSGGYDFGGGFQHWGEAMM   80 (298)
T ss_pred             ceEEEEec--cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCccccccccchhcc
Confidence            45688888  999999999999999999999999999999999999999999999999 79999999985 211    0 


Q ss_pred             --Cc-cchhhh-----hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCc-ccCCCCh
Q 024304          142 --GY-ADYENF-----GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV-GSFDAGY  212 (269)
Q Consensus       142 --~~-~~~~~~-----~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~-Gl~p~~g  212 (269)
                        .. ......     .......++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++ |++++  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~--  158 (298)
T PRK12478         81 TDGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLT--  158 (298)
T ss_pred             cccccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCch--
Confidence              00 000111     00011234557889999999999999999999999999999999999999999997 88752  


Q ss_pred             HHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          213 GSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       213 ~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +++  .+++|..++++|+++|++++|+||+++||||+|||++++++++.++|++|+
T Consensus       159 ~~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la  212 (298)
T PRK12478        159 GMW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELA  212 (298)
T ss_pred             hHH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHH
Confidence            233  356999999999999999999999999999999999999999999999886

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.2e-44  Score=311.88  Aligned_cols=184  Identities=32%  Similarity=0.453  Sum_probs=161.3

Q ss_pred             EEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhh
Q 024304           71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG  150 (269)
Q Consensus        71 v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~  150 (269)
                      +.++.  +++|++||||||+++|+||.+|+.+|.+++++++++ ++++|||+|.| ++||+|+|++....     .... 
T Consensus         2 ~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g-~~F~aG~Dl~~~~~-----~~~~-   71 (243)
T PRK07854          2 IGVTR--DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQG-TVFCAGADLSGDVY-----ADDF-   71 (243)
T ss_pred             ceEEE--eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCC-CceecccCCccchh-----HHHH-
Confidence            56677  899999999999999999999999999999999865 89999999998 69999999985210     1111 


Q ss_pred             hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHH
Q 024304          151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW  230 (269)
Q Consensus       151 ~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~  230 (269)
                      ...+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|..++++|+
T Consensus        72 ~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~  151 (243)
T PRK07854         72 PDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAML  151 (243)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHH
Confidence            11245667788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          231 FLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       231 ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++|++++|+||+++||||+|++.+    .+.+++++|+
T Consensus       152 ltg~~~~a~eA~~~Glv~~v~~~~----~a~~~a~~l~  185 (243)
T PRK07854        152 LGAEKLTAEQALATGMANRIGTLA----DAQAWAAEIA  185 (243)
T ss_pred             HcCCCcCHHHHHHCCCcccccCHH----HHHHHHHHHH
Confidence            999999999999999999998744    4555555543

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=100.00  E-value=4.6e-44  Score=327.37  Aligned_cols=188  Identities=25%  Similarity=0.364  Sum_probs=166.0

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc-hh
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD-YE  147 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~-~~  147 (269)
                      +.|.+++  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++....... ..
T Consensus         3 ~~v~~~~--~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~   80 (342)
T PRK05617          3 DEVLAEV--EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPL   80 (342)
T ss_pred             ceEEEEE--ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCch
Confidence            3578888  89999999999999999999999999999999999999999999999967999999999864311100 11


Q ss_pred             h--hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHH
Q 024304          148 N--FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK  225 (269)
Q Consensus       148 ~--~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~  225 (269)
                      .  ........+...+..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+++.| ..
T Consensus        81 ~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~  159 (342)
T PRK05617         81 AADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-AL  159 (342)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HH
Confidence            0  11112345677889999999999999999999999999999999999999999999999999999999999877 68


Q ss_pred             HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHH
Q 024304          226 AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAY  259 (269)
Q Consensus       226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~  259 (269)
                      +++|+++|+.++|+||+++||||+|+|++++++.
T Consensus       160 a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~  193 (342)
T PRK05617        160 GTYLALTGARISAADALYAGLADHFVPSADLPAL  193 (342)
T ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCHHHHHHH
Confidence            9999999999999999999999999999998876

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-43  Score=311.03  Aligned_cols=187  Identities=26%  Similarity=0.343  Sum_probs=166.2

Q ss_pred             EEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhh
Q 024304           71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG  150 (269)
Q Consensus        71 v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~  150 (269)
                      |.++.  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| +.||+|+|++++....   .... 
T Consensus         2 i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~---~~~~-   74 (248)
T PRK06072          2 IKVES--REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEG-RAFCVGADLSEFAPDF---AIDL-   74 (248)
T ss_pred             eEEEE--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhhh---HHHH-
Confidence            45677  899999999999999999999999999999999999999999999998 6999999999764311   1111 


Q ss_pred             hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHH
Q 024304          151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW  230 (269)
Q Consensus       151 ~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~  230 (269)
                      ...+..+...+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|+++++++++|. ++++++
T Consensus        75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~ll  153 (248)
T PRK06072         75 RETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEIL  153 (248)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHH
Confidence            1224566778899999999999999999999999999999999999999999999999999999999999997 899999


Q ss_pred             HcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          231 FLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       231 ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++|++++|+||+++||||.+   +++.+++.++|++|+
T Consensus       154 l~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la  188 (248)
T PRK06072        154 VLGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRIS  188 (248)
T ss_pred             HhCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHH
Confidence            99999999999999999963   467788888888876

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-43  Score=313.02  Aligned_cols=195  Identities=28%  Similarity=0.428  Sum_probs=170.6

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~  147 (269)
                      .+.+.++.  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.........
T Consensus         5 ~~~i~~~~--~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~   81 (260)
T PRK07827          5 DTLVRYAV--DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTG-GTFCAGADLSEAGGGGGDPYD   81 (260)
T ss_pred             CcceEEEe--eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCcChHHHhhcccCchh
Confidence            35678888  899999999999999999999999999999999999999999999998 699999999986532111111


Q ss_pred             --hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHH
Q 024304          148 --NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK  225 (269)
Q Consensus       148 --~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~  225 (269)
                        ......+.+++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++++++. ..+
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~  160 (260)
T PRK07827         82 AAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRA  160 (260)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHH
Confidence              11112345677889999999999999999999999999999999999999999999999999999999999875 568


Q ss_pred             HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          226 AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +++|+++|+.++|+||+++||||++++  ++++.+.+++++++
T Consensus       161 a~~l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la  201 (260)
T PRK07827        161 AARYYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLR  201 (260)
T ss_pred             HHHHHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHH
Confidence            999999999999999999999999974  58888888888876

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=100.00  E-value=1.7e-43  Score=326.70  Aligned_cols=195  Identities=26%  Similarity=0.370  Sum_probs=171.3

Q ss_pred             CCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc
Q 024304           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (269)
Q Consensus        66 ~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~  145 (269)
                      .....|.++.  +++|++|+||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.| ++||+|+|++.+.......
T Consensus         6 ~~~~~v~~~~--~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G-~~FcAGgDl~~l~~~~~~~   82 (381)
T PLN02988          6 ASQSQVLVEE--KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHG-RAFCAGGDVAAVVRDIEQG   82 (381)
T ss_pred             ccCCceEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCC-CCcccCcCHHHHHhhhccc
Confidence            3445688888  899999999999999999999999999999999999999999999999 6999999999874221111


Q ss_pred             h-hhhh--hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhC
Q 024304          146 Y-ENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVG  222 (269)
Q Consensus       146 ~-~~~~--~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G  222 (269)
                      . ....  ....+.+...+.++|||+||+|+|+|+|||++|+++||+||++++++|++||.++|++|++|++++|+|++|
T Consensus        83 ~~~~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G  162 (381)
T PLN02988         83 NWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPG  162 (381)
T ss_pred             chhHHHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHH
Confidence            0 0000  011123456788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHH
Q 024304          223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLT  264 (269)
Q Consensus       223 ~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la  264 (269)
                      . .+++|++||++++|+||+++||+|++||.+++++.+.+++
T Consensus       163 ~-~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la  203 (381)
T PLN02988        163 F-FGEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC  203 (381)
T ss_pred             H-HHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH
Confidence            7 7999999999999999999999999999999999999887

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=100.00  E-value=3.6e-43  Score=309.19  Aligned_cols=187  Identities=21%  Similarity=0.375  Sum_probs=161.0

Q ss_pred             EEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhh
Q 024304           71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG  150 (269)
Q Consensus        71 v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~  150 (269)
                      |.++.  +++|++|+||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|.|+.++...   ..... 
T Consensus         3 v~~~~--~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g-~~FcaG~Dl~~~~~~---~~~~~-   74 (251)
T TIGR03189         3 VWLER--DGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEG-PHFSFGASVAEHMPD---QCAAM-   74 (251)
T ss_pred             EEEEe--eCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCC-CceecCcChhhhCch---hHHHH-
Confidence            67777  8899999999997 5999999999999999999999999999999999 699999999875311   11111 


Q ss_pred             hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHH
Q 024304          151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW  230 (269)
Q Consensus       151 ~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~  230 (269)
                      .....+++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++ ++++|++++|..++++|+
T Consensus        75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~~a~~l~  153 (251)
T TIGR03189        75 LASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA-ASCLLPERMGRVAAEDLL  153 (251)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCc-hHHHHHHHhCHHHHHHHH
Confidence            1224567778999999999999999999999999999999999999999999999999874 577999999999999999


Q ss_pred             HcCCCCCHHHHHHcCccceecCCCcHHHHHHHH-HHhhc
Q 024304          231 FLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSL-TKCQA  268 (269)
Q Consensus       231 ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~l-a~~la  268 (269)
                      ++|++++|+||+++||||+|+|+++  +.+.++ +++++
T Consensus       154 ltg~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la  190 (251)
T TIGR03189       154 YSGRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPA  190 (251)
T ss_pred             HcCCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHH
Confidence            9999999999999999999998643  334443 45543

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=5.7e-43  Score=324.26  Aligned_cols=188  Identities=20%  Similarity=0.256  Sum_probs=166.4

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc-h
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD-Y  146 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~-~  146 (269)
                      ...|.+++  .+++++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++.+....... .
T Consensus        41 ~~~v~~e~--~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~G-kaFcAGgDl~~l~~~~~~~~~  117 (407)
T PLN02851         41 QDQVLVEG--RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSG-RAFCSGADVVSLYHLINEGNV  117 (407)
T ss_pred             CCCeEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcCHHHHHhhccccch
Confidence            35688888  899999999999999999999999999999999999999999999999 7999999999875321111 1


Q ss_pred             hhh--hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHH
Q 024304          147 ENF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK  224 (269)
Q Consensus       147 ~~~--~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~  224 (269)
                      ...  .....+++...+.++|||+||+|+|.|+|||++|+++||+||++++++|++||.++|++|++|++++|+|+.|. 
T Consensus       118 ~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~-  196 (407)
T PLN02851        118 EECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-  196 (407)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-
Confidence            111  11224566778889999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHH
Q 024304          225 KAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAY  259 (269)
Q Consensus       225 ~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~  259 (269)
                      .+++|++||++++|+||+++||+|+++|++++.+.
T Consensus       197 ~g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l~~l  231 (407)
T PLN02851        197 LGEYLALTGQKLNGVEMIACGLATHYCLNARLPLI  231 (407)
T ss_pred             HHHHHHHhCCcCCHHHHHHCCCceeecCHhhHHHH
Confidence            59999999999999999999999999999988443

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=100.00  E-value=4.1e-43  Score=317.45  Aligned_cols=188  Identities=30%  Similarity=0.453  Sum_probs=165.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhh--hhhhHHHHH
Q 024304           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF--GRLNVLDLQ  158 (269)
Q Consensus        81 v~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~--~~~~~~~l~  158 (269)
                      +++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++...........  ....+.++.
T Consensus        38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~  117 (360)
T TIGR03200        38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV  117 (360)
T ss_pred             EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence            345999999999999999999999999999999999999999999679999999998653211111111  111234667


Q ss_pred             HHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCH
Q 024304          159 VQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTA  238 (269)
Q Consensus       159 ~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a  238 (269)
                      ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++++|++++|
T Consensus       118 ~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA  197 (360)
T TIGR03200       118 SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSA  197 (360)
T ss_pred             HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCccceecCCCcH------------HHHHHHHHHhhc
Q 024304          239 EEAEKMGLVNTVVPVSLF------------VAYLMSLTKCQA  268 (269)
Q Consensus       239 ~eA~~~GLv~~vv~~e~l------------~~~a~~la~~la  268 (269)
                      +||+++||||+|+|.+++            +++++.+++.+.
T Consensus       198 ~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~  239 (360)
T TIGR03200       198 HKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVH  239 (360)
T ss_pred             HHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhc
Confidence            999999999999999998            788888777654

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=6.3e-43  Score=308.36  Aligned_cols=193  Identities=22%  Similarity=0.273  Sum_probs=164.0

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~  146 (269)
                      +|..+.++.  +++|++|+||||+++|+||.+|+.+|.++++.++  +++++|||+|.| ++||+|+|++++........
T Consensus         2 ~~~~i~~~~--~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g-~~FsaG~Dl~~~~~~~~~~~   76 (255)
T PRK07112          2 DYQTIRVRQ--QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLP-EVFCFGADFSAIAEKPDAGR   76 (255)
T ss_pred             CCceEEEEe--eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCC-CCcccCcCHHHHhhccccch
Confidence            356789998  8999999999999999999999999999999998  359999999998 69999999998653211111


Q ss_pred             h-hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHH
Q 024304          147 E-NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK  225 (269)
Q Consensus       147 ~-~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~  225 (269)
                      . ......+..++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++ ..++++++|..+
T Consensus        77 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~  155 (255)
T PRK07112         77 ADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQK  155 (255)
T ss_pred             hhhhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHH
Confidence            1 11112234677889999999999999999999999999999999999999999999999999864 567999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhh
Q 024304          226 AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQ  267 (269)
Q Consensus       226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~l  267 (269)
                      +++|+++|++++|+||+++||||+|+|+++.  .+.++++++
T Consensus       156 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l  195 (255)
T PRK07112        156 AHYMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRL  195 (255)
T ss_pred             HHHHHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHH
Confidence            9999999999999999999999999997652  344555554

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=5.7e-43  Score=323.92  Aligned_cols=193  Identities=24%  Similarity=0.294  Sum_probs=167.5

Q ss_pred             CCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc
Q 024304           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (269)
Q Consensus        66 ~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~  145 (269)
                      +.+..|.++.  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.......
T Consensus         8 ~~~~~v~~~~--~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~~~~   84 (379)
T PLN02874          8 PAEEVVLGEE--KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAG-RAFSAGGDLKMFYDGRESD   84 (379)
T ss_pred             CCCCceEEEE--ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCccCHHHHHhhcccc
Confidence            3456688888  899999999999999999999999999999999999999999999998 6999999999864321111


Q ss_pred             hhhh-hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHH
Q 024304          146 YENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK  224 (269)
Q Consensus       146 ~~~~-~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~  224 (269)
                      .... .......+...|.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++++|++|. 
T Consensus        85 ~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-  163 (379)
T PLN02874         85 DSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-  163 (379)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-
Confidence            1101 11122345668889999999999999999999999999999999999999999999999999999999999885 


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHH
Q 024304          225 KAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMS  262 (269)
Q Consensus       225 ~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~  262 (269)
                      .+++|++||++++|+||+++||||+|||++++.+.+.+
T Consensus       164 ~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~  201 (379)
T PLN02874        164 LGEYLALTGARLNGKEMVACGLATHFVPSEKLPELEKR  201 (379)
T ss_pred             HHHHHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHH
Confidence            89999999999999999999999999999998874433

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.9e-43  Score=302.82  Aligned_cols=191  Identities=23%  Similarity=0.306  Sum_probs=169.9

Q ss_pred             eEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhh
Q 024304           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF  149 (269)
Q Consensus        70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~  149 (269)
                      .|.+++  +++|++|+|||| +.|+||.+|+.+|.++++.++  +++++|||+|.| ++||+|+|++++... .......
T Consensus         4 ~i~~~~--~~~v~~itln~~-~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g-~~F~~G~Dl~~~~~~-~~~~~~~   76 (229)
T PRK06213          4 LVSYTL--EDGVATITLDDG-KVNALSPAMIDALNAALDQAE--DDRAVVVITGQP-GIFSGGFDLKVMTSG-AQAAIAL   76 (229)
T ss_pred             eEEEEe--cCCEEEEEeCCC-CCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCC-CceEcCcCHHHHhcc-hHhHHHH
Confidence            578888  899999999998 469999999999999999998  457999999999 699999999987532 1111111


Q ss_pred             hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC-ceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304          150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE  228 (269)
Q Consensus       150 ~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~  228 (269)
                       .....+++..+.++|||+||+|||+|+|||++|+++||+||++++ ++|++||.++|++|+.++..++++++|...+++
T Consensus        77 -~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~  155 (229)
T PRK06213         77 -LTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQR  155 (229)
T ss_pred             -HHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHH
Confidence             122456778899999999999999999999999999999999999 999999999999988888888999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++++|++++|+||+++||||+|+|++++.+.+.+++++++
T Consensus       156 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  195 (229)
T PRK06213        156 AVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELA  195 (229)
T ss_pred             HHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999886

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=100.00  E-value=2.4e-42  Score=301.84  Aligned_cols=194  Identities=24%  Similarity=0.318  Sum_probs=165.6

Q ss_pred             EEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCce-EEEEEcCCCCceeccccccccccCCccch-hh
Q 024304           71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVG-VIILTGKGTEAFCSGGDQALRTRDGYADY-EN  148 (269)
Q Consensus        71 v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~-vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~-~~  148 (269)
                      ++++.  +++|++|+||||++ |+||.+|+.+|.++++++++|++++ +||++|.| ++||+|.|++++........ ..
T Consensus         2 ~~~~~--~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g-~~FsaG~Dl~~~~~~~~~~~~~~   77 (239)
T PLN02267          2 CTLEK--RGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEG-KFFSNGFDLAWAQAAGSAPSRLH   77 (239)
T ss_pred             ceeEe--cCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCC-CceeCCcCHHHHhccccCHHHHH
Confidence            46677  89999999999986 9999999999999999999999875 77778887 69999999987642111111 11


Q ss_pred             hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEe-CCceEecCCCCcccCCCChHHHHHHhhhCHHHH-
Q 024304          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA-  226 (269)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~-~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a-  226 (269)
                      .....+.+++..+.++|||+||+|||+|+|||++|+++||+||++ ++++|++||.++|+.++++++.++++++|..++ 
T Consensus        78 ~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~  157 (239)
T PLN02267         78 LMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAAR  157 (239)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHH
Confidence            111234567778999999999999999999999999999999998 568999999999997555568899999999999 


Q ss_pred             HHHHHcCCCCCHHHHHHcCccceecCC-CcHHHHHHHHHHhhc
Q 024304          227 REMWFLARFYTAEEAEKMGLVNTVVPV-SLFVAYLMSLTKCQA  268 (269)
Q Consensus       227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~-e~l~~~a~~la~~la  268 (269)
                      ++|+++|++++|+||+++||||+|+|. +++.+.+.++|++|+
T Consensus       158 ~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia  200 (239)
T PLN02267        158 RDVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELA  200 (239)
T ss_pred             HHHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHh
Confidence            699999999999999999999999985 789999999999886

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=1e-41  Score=338.03  Aligned_cols=197  Identities=25%  Similarity=0.297  Sum_probs=175.6

Q ss_pred             eEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh-
Q 024304           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN-  148 (269)
Q Consensus        70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~-  148 (269)
                      ++.++.. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.......... 
T Consensus         7 ~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~~~~   84 (715)
T PRK11730          7 TLQVDWL-EDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAK-DAFIVGADITEFLSLFAAPEEEL   84 (715)
T ss_pred             eEEEEEc-CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCC-CccccCcCHHHHhhhccCCHHHH
Confidence            5677632 789999999999999999999999999999999999999999999998 6999999998864321111111 


Q ss_pred             -hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHH
Q 024304          149 -FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR  227 (269)
Q Consensus       149 -~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~  227 (269)
                       .......+++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|+|++|..+|+
T Consensus        85 ~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~  164 (715)
T PRK11730         85 SQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNAL  164 (715)
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHH
Confidence             1111245677789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          228 EMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       228 ~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +|+++|++++|+||+++||||+|+|.+++.+.+.++|++++
T Consensus       165 ~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  205 (715)
T PRK11730        165 EWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAI  205 (715)
T ss_pred             HHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999998876

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=100.00  E-value=3.9e-41  Score=284.73  Aligned_cols=193  Identities=40%  Similarity=0.618  Sum_probs=175.3

Q ss_pred             EEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch-hhhh
Q 024304           72 IYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY-ENFG  150 (269)
Q Consensus        72 ~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~-~~~~  150 (269)
                      .+++  +++|++|+||+|++.|++|.+|+++|.++++.++.|+++++|||+|.+ +.||+|+|++++........ ....
T Consensus         2 ~~~~--~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~-~~Fs~G~dl~~~~~~~~~~~~~~~~   78 (195)
T cd06558           2 LVER--DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAG-KAFCAGADLKELAALSDAGEEARAF   78 (195)
T ss_pred             EEEE--ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceEeCcCHHHHhcccccchhHHHH
Confidence            5666  789999999999999999999999999999999999999999999986 79999999998765433221 1112


Q ss_pred             hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHH
Q 024304          151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW  230 (269)
Q Consensus       151 ~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~  230 (269)
                      ...+..+...+..++||+|++++|.|+|+|++++++||+||++++++|++||.++|++|+++++.+|++++|.+.+++++
T Consensus        79 ~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~  158 (195)
T cd06558          79 IRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL  158 (195)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence            23457788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhh
Q 024304          231 FLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQ  267 (269)
Q Consensus       231 ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~l  267 (269)
                      ++|+.++++||+++|||+++++.+++.+++.++++++
T Consensus       159 l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a~~~  195 (195)
T cd06558         159 LTGRRISAEEALELGLVDEVVPDEELLAAALELARRL  195 (195)
T ss_pred             HcCCccCHHHHHHcCCCCeecChhHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999864

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=1.3e-40  Score=318.66  Aligned_cols=200  Identities=17%  Similarity=0.195  Sum_probs=172.1

Q ss_pred             CCCcc--eEEEEEEecCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHhh-cCCCceEEEEEcCCCCc
Q 024304           65 GTEFT--DIIYEKAVGEGIAKITINRPDRR-------------NAFRPHTVKELIRAFNDAR-DDSSVGVIILTGKGTEA  128 (269)
Q Consensus        65 ~~~~~--~v~~~~~~~~gv~~I~lnrp~~~-------------Nal~~~~~~~L~~al~~~~-~d~~~~vvVl~g~g~~~  128 (269)
                      ...|.  ++.+++  +++|++||||||+++             |+||.+|+.+|.+++.+++ +|+++++|||+|.| +.
T Consensus       252 ~~~~~~~~v~~~~--~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G-~~  328 (546)
T TIGR03222       252 GVRYPTVDVAIDR--AARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQG-DA  328 (546)
T ss_pred             CcceeeEEEEEec--cCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCC-CC
Confidence            44444  455565  899999999999999             9999999999999999998 56999999999988 56


Q ss_pred             -eeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEE-cCcccccc-hhhhhcccEEEE-------eCCceE
Q 024304          129 -FCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV-AGYAVGGG-HVLHMVCDLTIA-------ADNAIF  198 (269)
Q Consensus       129 -Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v-~G~a~GgG-~~lal~~D~~ia-------~~~a~f  198 (269)
                       ||+|.|+......+........ .....++..|..+|||+||+| ||+|+||| ++|+++||++|+       +++++|
T Consensus       329 ~F~aG~Dl~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f  407 (546)
T TIGR03222       329 ELVLAADALLEAHKDHWFVRETI-GYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAI  407 (546)
T ss_pred             ceecCcCccccccccchhHHHHH-HHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEE
Confidence             9999999842211110101111 112446778999999999999 89999999 999999999999       999999


Q ss_pred             ecCCCCcccCCCChHHHHHHhhh-CHHHH--HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          199 GQTGPKVGSFDAGYGSSIMSRLV-GPKKA--REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       199 ~~~~~~~Gl~p~~g~~~~l~r~~-G~~~a--~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++||.++|++|+++++++|++++ |..++  ++++++|+.++|+||+++||||+|+|++++++++.+++++|+
T Consensus       408 ~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  480 (546)
T TIGR03222       408 TLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERA  480 (546)
T ss_pred             eCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHH
Confidence            99999999999999999999998 99899  559999999999999999999999999999999999999987

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=1.3e-40  Score=318.59  Aligned_cols=202  Identities=20%  Similarity=0.237  Sum_probs=175.1

Q ss_pred             CCCcceEEEEEEecCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHhh-cCCCceEEEEEcCCCCceeccc
Q 024304           65 GTEFTDIIYEKAVGEGIAKITINRPD----------RRNAFRPHTVKELIRAFNDAR-DDSSVGVIILTGKGTEAFCSGG  133 (269)
Q Consensus        65 ~~~~~~v~~~~~~~~gv~~I~lnrp~----------~~Nal~~~~~~~L~~al~~~~-~d~~~~vvVl~g~g~~~Fc~G~  133 (269)
                      ..+|++|.+++  +++|++|+||||+          ++|+||.+|+.+|.++++.++ +|+++++|||||.++++||+|.
T Consensus         7 ~~~~~~v~~~~--~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~   84 (546)
T TIGR03222         7 PSQYRHWKLTF--DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGA   84 (546)
T ss_pred             CCCCceEEEEe--eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCc
Confidence            45678899998  8999999999976          899999999999999999999 7899999999997657999999


Q ss_pred             cccccccCCccchhhhhh---hhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC--ceEecCCCC-ccc
Q 024304          134 DQALRTRDGYADYENFGR---LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPK-VGS  207 (269)
Q Consensus       134 Dl~~~~~~~~~~~~~~~~---~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~--a~f~~~~~~-~Gl  207 (269)
                      |++++.............   .....+...+.++|||+||+|||+|+|||++|+++||+||++++  ++|++||++ +|+
T Consensus        85 DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl  164 (546)
T TIGR03222        85 NIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGV  164 (546)
T ss_pred             CHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCc
Confidence            999864321111111111   11123445677899999999999999999999999999999986  799999997 999


Q ss_pred             CCCChHHHHHH--hhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          208 FDAGYGSSIMS--RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       208 ~p~~g~~~~l~--r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +|+++++.+++  +++|..+|++|+++|++++|+||+++||||+|+|++++++++.++|++|+
T Consensus       165 ~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la  227 (546)
T TIGR03222       165 LPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELA  227 (546)
T ss_pred             CCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHH
Confidence            99999998887  68999999999999999999999999999999999999999999999986

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=1.9e-40  Score=328.48  Aligned_cols=196  Identities=27%  Similarity=0.318  Sum_probs=174.6

Q ss_pred             eEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhh
Q 024304           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF  149 (269)
Q Consensus        70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~  149 (269)
                      .+.++.. +++|++|+||||++.|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++...........
T Consensus         7 ~i~~~~~-~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~   84 (714)
T TIGR02437         7 TIQVTAL-EDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGK-DAFIVGADITEFLGLFALPDAEL   84 (714)
T ss_pred             eEEEEEc-cCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccCcCHHHHhhcccCCHHHH
Confidence            5677643 789999999999999999999999999999999999999999999998 69999999998753111111111


Q ss_pred             --hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHH
Q 024304          150 --GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR  227 (269)
Q Consensus       150 --~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~  227 (269)
                        ......+++..|..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|+
T Consensus        85 ~~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~  164 (714)
T TIGR02437        85 IQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNAL  164 (714)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHH
Confidence              111245677899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhh
Q 024304          228 EMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQ  267 (269)
Q Consensus       228 ~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~l  267 (269)
                      +|+++|++++|+||+++||||+++|.+++.+.+.++++++
T Consensus       165 ~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~  204 (714)
T TIGR02437       165 EWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDA  204 (714)
T ss_pred             HHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999764

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=2.6e-40  Score=327.89  Aligned_cols=196  Identities=24%  Similarity=0.413  Sum_probs=172.8

Q ss_pred             eEEEEEEecCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304           70 DIIYEKAVGEGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (269)
Q Consensus        70 ~v~~~~~~~~gv~~I~lnrp-~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~  148 (269)
                      ++.+++. +++|++|+|||| ++.|+||.+|+.+|.+++++++.|+++++|||+|.++++||+|+|++++..........
T Consensus         6 ~~~~~~~-~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~   84 (708)
T PRK11154          6 AFTLNVR-EDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAE   84 (708)
T ss_pred             eEEEEEc-CCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHH
Confidence            4566663 689999999999 68999999999999999999999999999999997667999999999874321111111


Q ss_pred             hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC--ceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA  226 (269)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~--a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a  226 (269)
                      ........++..+.++|||+||+|||+|+|||++|+++||+||++++  ++|++||+++|++|++|++++|++++|..+|
T Consensus        85 ~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A  164 (708)
T PRK11154         85 ALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTA  164 (708)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHH
Confidence            11112355778899999999999999999999999999999999987  4899999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHh
Q 024304          227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKC  266 (269)
Q Consensus       227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~  266 (269)
                      ++|+++|++++|+||+++||||+++|.+++.+.+.++|++
T Consensus       165 ~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~  204 (708)
T PRK11154        165 LDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKK  204 (708)
T ss_pred             HHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999987

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=1.8e-40  Score=318.41  Aligned_cols=203  Identities=17%  Similarity=0.169  Sum_probs=172.8

Q ss_pred             CCCcceEEEEEEecCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHhhc-CCCceEEEEEcCCCCcee
Q 024304           65 GTEFTDIIYEKAVGEGIAKITINRPDRR-------------NAFRPHTVKELIRAFNDARD-DSSVGVIILTGKGTEAFC  130 (269)
Q Consensus        65 ~~~~~~v~~~~~~~~gv~~I~lnrp~~~-------------Nal~~~~~~~L~~al~~~~~-d~~~~vvVl~g~g~~~Fc  130 (269)
                      .-.|.+|.++...+++|++||||||+++             |+||.+|+.+|.+++++++. |+++++|||||.|+++||
T Consensus       256 ~~~~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~  335 (550)
T PRK08184        256 GLRYRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAV  335 (550)
T ss_pred             ceeeEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEE
Confidence            3456556655533689999999999988             68999999999999999986 799999999998844999


Q ss_pred             ccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEc-Ccccccc-hhhhhcccEEEEe-------CCceEecC
Q 024304          131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA-GYAVGGG-HVLHMVCDLTIAA-------DNAIFGQT  201 (269)
Q Consensus       131 ~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~-G~a~GgG-~~lal~~D~~ia~-------~~a~f~~~  201 (269)
                      +|+|++............. ......++..|..+|||+||+|| |+|+||| ++|+++||+||++       ++++|++|
T Consensus       336 aG~Dl~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~p  414 (550)
T PRK08184        336 LAADATLLAHKDHWLVRET-RGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLS  414 (550)
T ss_pred             eCCChhhhcccchHHHHHH-HHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECc
Confidence            9999874321110000111 11234567789999999999997 9999999 9999999999999       99999999


Q ss_pred             CCCcccCCCChHHHHHHhh-hCHHHHHHH--HHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          202 GPKVGSFDAGYGSSIMSRL-VGPKKAREM--WFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       202 ~~~~Gl~p~~g~~~~l~r~-~G~~~a~~l--~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |.++|++|++|++++|+++ +|..+++++  +++|++++|+||+++||||+|+|++++++++.+++++++
T Consensus       415 e~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia  484 (550)
T PRK08184        415 ALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERA  484 (550)
T ss_pred             cccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHH
Confidence            9999999999999999998 699999997  589999999999999999999999999999999999986

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=6.8e-40  Score=325.27  Aligned_cols=201  Identities=21%  Similarity=0.345  Sum_probs=173.0

Q ss_pred             CCCcceEEEEEEecCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEE-EEEcCCCCceeccccccccccCC
Q 024304           65 GTEFTDIIYEKAVGEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVI-ILTGKGTEAFCSGGDQALRTRDG  142 (269)
Q Consensus        65 ~~~~~~v~~~~~~~~gv~~I~lnrp~-~~Nal~~~~~~~L~~al~~~~~d~~~~vv-Vl~g~g~~~Fc~G~Dl~~~~~~~  142 (269)
                      ...+.++.++.  +++|++|+||||+ +.|+||.+|+.+|.+++++++.|+++++| |++|.| ++||+|+|++++....
T Consensus         9 ~~~~~~~~~~~--~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g-~~F~aG~Dl~~~~~~~   85 (737)
T TIGR02441         9 LMARTHRHYEV--KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKP-GSFVAGADIQMIAACK   85 (737)
T ss_pred             CCCCCeEEEEE--ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCC-CcceeCcCHHHHhccC
Confidence            34456788988  8999999999998 58999999999999999999999999965 569988 6999999999875321


Q ss_pred             ccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC--ceEecCCCCcccCCCChHHHHHHhh
Q 024304          143 YADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPKVGSFDAGYGSSIMSRL  220 (269)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~--a~f~~~~~~~Gl~p~~g~~~~l~r~  220 (269)
                      .............+++..+.++|||+||+|||+|+|||++|+++||+|||+++  ++|++||+++|++|++|++++|+|+
T Consensus        86 ~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprl  165 (737)
T TIGR02441        86 TAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKL  165 (737)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHh
Confidence            11111111123456788999999999999999999999999999999999988  5899999999999999999999999


Q ss_pred             hCHHHHHHHHHcCCCCCHHHHHHcCccceecCC-------------CcHHHHHHHHHHhhc
Q 024304          221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPV-------------SLFVAYLMSLTKCQA  268 (269)
Q Consensus       221 ~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~-------------e~l~~~a~~la~~la  268 (269)
                      +|..+|++|+++|++++|+||+++||||+|+|+             +++.+.+.++++.++
T Consensus       166 iG~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~  226 (737)
T TIGR02441       166 TGVPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLA  226 (737)
T ss_pred             hCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999987             457777777776653

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=4.6e-41  Score=281.33  Aligned_cols=191  Identities=29%  Similarity=0.424  Sum_probs=170.6

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc--hhhhh-----
Q 024304           78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD--YENFG-----  150 (269)
Q Consensus        78 ~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~--~~~~~-----  150 (269)
                      +..|+++.||||.|+|+||..|+.|+.++++.+.+||+|++|||+|+| |.||+|+|++.+.......  .++..     
T Consensus        29 ~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~G-KhFcaGIDl~~~~~~~~~~~~~dd~aR~g~~  107 (292)
T KOG1681|consen   29 QPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAG-KHFCAGIDLNDMASDRILQPEGDDVARKGRS  107 (292)
T ss_pred             CCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCC-cceecccCcchhhhhhccccccchHhhhhHH
Confidence            778999999999999999999999999999999999999999999999 8999999988764321111  11111     


Q ss_pred             -hh---hHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhC-HHH
Q 024304          151 -RL---NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVG-PKK  225 (269)
Q Consensus       151 -~~---~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G-~~~  225 (269)
                       +.   ..++-+..|.+||||+|++|+|+|+|+|+.|..+||+|+|+++|.|..-|+.+|+..+.|...+||..+| .+.
T Consensus       108 lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~RlpkvVGn~s~  187 (292)
T KOG1681|consen  108 LRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPKVVGNQSL  187 (292)
T ss_pred             HHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHhhhhHHhcchHH
Confidence             11   2455667889999999999999999999999999999999999999999999999999999999999999 899


Q ss_pred             HHHHHHcCCCCCHHHHHHcCccceecCC-CcHHHHHHHHHHhhcC
Q 024304          226 AREMWFLARFYTAEEAEKMGLVNTVVPV-SLFVAYLMSLTKCQAH  269 (269)
Q Consensus       226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~-e~l~~~a~~la~~la~  269 (269)
                      ++++.+|++.++|.||++.|||.+|+|+ +++.+.+..+|+.||.
T Consensus       188 ~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~  232 (292)
T KOG1681|consen  188 ARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIAS  232 (292)
T ss_pred             HHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhcc
Confidence            9999999999999999999999999986 7899999999998873

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=1.2e-39  Score=312.88  Aligned_cols=201  Identities=21%  Similarity=0.236  Sum_probs=173.9

Q ss_pred             CCcceEEEEEEecCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHhh-cCCCceEEEEEcCCCCceecccc
Q 024304           66 TEFTDIIYEKAVGEGIAKITINRP-------D---RRNAFRPHTVKELIRAFNDAR-DDSSVGVIILTGKGTEAFCSGGD  134 (269)
Q Consensus        66 ~~~~~v~~~~~~~~gv~~I~lnrp-------~---~~Nal~~~~~~~L~~al~~~~-~d~~~~vvVl~g~g~~~Fc~G~D  134 (269)
                      ..|+++.++.  +++|++|+||||       +   ++|+||.+|+.+|.++++.++ +|+++++|||+|.++++||+|+|
T Consensus        12 ~~~~~~~~e~--~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~D   89 (550)
T PRK08184         12 SQYRHWKLSF--DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGAN   89 (550)
T ss_pred             CCCceEEEEe--eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccC
Confidence            4578899998  899999999965       4   899999999999999999999 78999999999987689999999


Q ss_pred             ccccccCCccchhhhhh---hhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC--ceEecCCCC-cccC
Q 024304          135 QALRTRDGYADYENFGR---LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPK-VGSF  208 (269)
Q Consensus       135 l~~~~~~~~~~~~~~~~---~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~--a~f~~~~~~-~Gl~  208 (269)
                      ++.+.............   .....+...+.++|||+||+|||+|+|||++|+++|||||++++  ++|++||.+ +|++
T Consensus        90 L~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~  169 (550)
T PRK08184         90 IFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL  169 (550)
T ss_pred             HHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence            99864321111111111   11122445677899999999999999999999999999999987  899999997 9999


Q ss_pred             CCChHHHHHH--hhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          209 DAGYGSSIMS--RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       209 p~~g~~~~l~--r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |+++++.+++  +++|..++++|+++|+.++|+||+++||||+|+|++++.+++.++|++|+
T Consensus       170 P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia  231 (550)
T PRK08184        170 PGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELA  231 (550)
T ss_pred             CCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHH
Confidence            9999999998  78999999999999999999999999999999999999999999999886

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=1.5e-39  Score=321.93  Aligned_cols=187  Identities=25%  Similarity=0.449  Sum_probs=166.5

Q ss_pred             cCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHhhcCCCceEEEE-EcCCCCceeccccccccccCCccchhhhhhhhHH
Q 024304           78 GEGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVL  155 (269)
Q Consensus        78 ~~gv~~I~lnrp-~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl-~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~  155 (269)
                      +++|++|+|||| ++.|+||.+|+.+|.+++++++.|+++++||| +|.| ++||+|+|++++.................
T Consensus         8 ~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~   86 (699)
T TIGR02440         8 EDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKP-DNFIAGADISMLAACQTAGEAKALAQQGQ   86 (699)
T ss_pred             CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CceeeccCchhhhccCChhHHHHHHHHHH
Confidence            789999999999 69999999999999999999999999999987 5666 69999999998743211111111111245


Q ss_pred             HHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC--ceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcC
Q 024304          156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLA  233 (269)
Q Consensus       156 ~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~--a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg  233 (269)
                      .++..+..+|||+||+|||+|+|||++|+++||+|||+++  ++|++||+++|++|++|++++|+|++|..++++|+++|
T Consensus        87 ~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG  166 (699)
T TIGR02440        87 VLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTG  166 (699)
T ss_pred             HHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcC
Confidence            6777899999999999999999999999999999999986  79999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHcCccceecCCCcHHHHHHHHHH
Q 024304          234 RFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTK  265 (269)
Q Consensus       234 ~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~  265 (269)
                      +.++|+||+++||||+++|++++.+++.++|+
T Consensus       167 ~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~  198 (699)
T TIGR02440       167 KQLRAKQALKLGLVDDVVPQSILLDTAVEMAL  198 (699)
T ss_pred             CcCCHHHHHhCCCCcEecChhHHHHHHHHHHH
Confidence            99999999999999999999999999999997

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-40  Score=276.76  Aligned_cols=198  Identities=31%  Similarity=0.499  Sum_probs=175.4

Q ss_pred             ceEEEEEE--ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304           69 TDIIYEKA--VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (269)
Q Consensus        69 ~~v~~~~~--~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~  146 (269)
                      .+|.+++-  -+.||.+|-+|||.++|+|+..|+++|.++++.+..|+.+++|+|++.-+..||+|.|+++.........
T Consensus        27 ~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev  106 (291)
T KOG1679|consen   27 NEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEV  106 (291)
T ss_pred             ceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHH
Confidence            44555442  1779999999999999999999999999999999999999999999988899999999999765543222


Q ss_pred             hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA  226 (269)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a  226 (269)
                      ..+ -..+..++..|.++|.|+||+++|.+.|||++|+++||+|+|+.+++|+++|.+++++|++||+++|+|.+|...+
T Consensus       107 ~~f-V~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~ala  185 (291)
T KOG1679|consen  107 TRF-VNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALA  185 (291)
T ss_pred             HHH-HHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHH
Confidence            222 2236678889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCccceecCC----CcHHHHHHHHHHhh
Q 024304          227 REMWFLARFYTAEEAEKMGLVNTVVPV----SLFVAYLMSLTKCQ  267 (269)
Q Consensus       227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~----e~l~~~a~~la~~l  267 (269)
                      +||++|++.+++.||..+|||||+|..    |...+.+.++|+++
T Consensus       186 KELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~ei  230 (291)
T KOG1679|consen  186 KELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREI  230 (291)
T ss_pred             HhHhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHh
Confidence            999999999999999999999999975    46777788888765

>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=2e-37  Score=264.63  Aligned_cols=201  Identities=29%  Similarity=0.441  Sum_probs=179.2

Q ss_pred             CCCcceEEEEEEecCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc
Q 024304           65 GTEFTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY  143 (269)
Q Consensus        65 ~~~~~~v~~~~~~~~gv~~I~ln-rp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~  143 (269)
                      ...+.++.+++  ++|+.+|.+| ||+++|+++.+++.++.++|+.+.+|+++..++++|.| ++||+|.|+........
T Consensus         3 ~~~~~~~vv~~--~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G-~~f~sG~Df~~~~~~~~   79 (266)
T KOG0016|consen    3 AMRYREIVVTR--ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNG-SYFCSGLDFSPFAKALD   79 (266)
T ss_pred             cccccceEEEe--cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCc-cEEeeccccchhhhcCC
Confidence            34677889999  9999999999 99999999999999999999999999999999999999 59999999988654322


Q ss_pred             cchhhh---h---hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHH
Q 024304          144 ADYENF---G---RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIM  217 (269)
Q Consensus       144 ~~~~~~---~---~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l  217 (269)
                      .+..+.   .   -..+..+...+..+|||+||+|||+|+|.|+.+...||+++|+|+++|..|+.++|..|+++.++.+
T Consensus        80 ~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~  159 (266)
T KOG0016|consen   80 DDANEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTL  159 (266)
T ss_pred             CcccccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeee
Confidence            221111   1   1123346778899999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          218 SRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       218 ~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |+++|...|.||++.|++++|+||.+.|||++++|.+.+.+.+..-+++++
T Consensus       160 p~imG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s  210 (266)
T KOG0016|consen  160 PKIMGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYS  210 (266)
T ss_pred             hHhhchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999988887765

>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=9.9e-37  Score=270.26  Aligned_cols=194  Identities=24%  Similarity=0.310  Sum_probs=174.1

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh-
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE-  147 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~-  147 (269)
                      ..|.++.  .+....||||||+.+||+|.+|+..+...|..++.++.+++||+.|.++|+||+|+|+....+....... 
T Consensus        38 ~~VL~e~--~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~  115 (401)
T KOG1684|consen   38 DQVLVEG--KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETP  115 (401)
T ss_pred             CceEEec--CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCch
Confidence            5789998  9999999999999999999999999999999999999999999999999999999998865443322221 


Q ss_pred             --hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHH
Q 024304          148 --NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK  225 (269)
Q Consensus       148 --~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~  225 (269)
                        ......-+.+...|..+.||.||.++|.+||||++|+++.-||||+|++.|++||..+|++|+.|++++++|+.| ..
T Consensus       116 ~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~l  194 (401)
T KOG1684|consen  116 EVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YL  194 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HH
Confidence              111222456778999999999999999999999999999999999999999999999999999999999999999 59


Q ss_pred             HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHH
Q 024304          226 AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTK  265 (269)
Q Consensus       226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~  265 (269)
                      +.+|.|||+++++.||+..||.+|.||+++|...-++|.+
T Consensus       195 g~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~  234 (401)
T KOG1684|consen  195 GLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLK  234 (401)
T ss_pred             HHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhh
Confidence            9999999999999999999999999999998887777763

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=1.7e-33  Score=232.35  Aligned_cols=195  Identities=29%  Similarity=0.383  Sum_probs=171.4

Q ss_pred             eEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhh
Q 024304           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF  149 (269)
Q Consensus        70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~  149 (269)
                      ..+++.  +++|..|+||+|+|+|.++.+|+.+|.+++....+..++|+|||+..| +.||+|.|++++......+...-
T Consensus        33 ~g~~~~--~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~G-kifSaGH~LKELt~e~g~d~hae  109 (287)
T KOG1682|consen   33 LGLVKE--HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQG-KIFSAGHNLKELTNEPGSDIHAE  109 (287)
T ss_pred             cccccc--ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCC-ccccccccHHHhhcCccchHHHH
Confidence            344555  799999999999999999999999999999999999999999999999 69999999999875432222211


Q ss_pred             hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHH
Q 024304          150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREM  229 (269)
Q Consensus       150 ~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l  229 (269)
                      ......+++.-|+++|.|+|+.|||++..+|+.|...||+++|++++.|..|..++|+|....| .-+.|.+..+.+.+|
T Consensus       110 vFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPG-vAlaRavpRkva~~M  188 (287)
T KOG1682|consen  110 VFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPG-VALARAVPRKVAAYM  188 (287)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcc-hhHhhhcchhHHHHH
Confidence            2233567888999999999999999999999999999999999999999999999999765543 357888899999999


Q ss_pred             HHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          230 WFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       230 ~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++||.+++++||+..|||++|||.++|+.++++++..|-
T Consensus       189 L~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~  227 (287)
T KOG1682|consen  189 LMTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIK  227 (287)
T ss_pred             HHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999988764

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.85  E-value=4.6e-21  Score=160.26  Aligned_cols=144  Identities=20%  Similarity=0.217  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCccc
Q 024304           98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV  177 (269)
Q Consensus        98 ~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~  177 (269)
                      -.+.+|.++++++++|+++++|||++     ||.|+|+....             .+.++...+.+++||+||+++|.|.
T Consensus        22 ~~~~~l~~~l~~a~~d~~v~~vvl~~-----~~~gg~~~~~~-------------~~~~~i~~~~~~~kpVia~v~G~a~   83 (177)
T cd07014          22 VSGDTTAAQIRDARLDPKVKAIVLRV-----NSPGGSVTASE-------------VIRAELAAARAAGKPVVASGGGNAA   83 (177)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEe-----eCCCcCHHHHH-------------HHHHHHHHHHhCCCCEEEEECCchh
Confidence            45789999999999999999999986     57888766421             1344566788899999999999999


Q ss_pred             ccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHH--------HHHhhhC--HHHHHHHHHcCCCCCHHHHHHcCcc
Q 024304          178 GGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSS--------IMSRLVG--PKKAREMWFLARFYTAEEAEKMGLV  247 (269)
Q Consensus       178 GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~--------~l~r~~G--~~~a~~l~ltg~~i~a~eA~~~GLv  247 (269)
                      |+|+.|+++||++++++++.|+.++...+..+......        .+++..|  ....++++..|..++|+||++.|||
T Consensus        84 g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLV  163 (177)
T cd07014          84 SGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLV  163 (177)
T ss_pred             HHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCc
Confidence            99999999999999999999999877655322111111        3444455  7788899999999999999999999


Q ss_pred             ceecCCCcHHHH
Q 024304          248 NTVVPVSLFVAY  259 (269)
Q Consensus       248 ~~vv~~e~l~~~  259 (269)
                      |++.+.+++.+.
T Consensus       164 D~v~~~~e~~~~  175 (177)
T cd07014         164 DSLGSFDDAVAK  175 (177)
T ss_pred             ccCCCHHHHHHH
Confidence            999998887664

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.84  E-value=2.5e-20  Score=157.20  Aligned_cols=152  Identities=22%  Similarity=0.248  Sum_probs=120.5

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHH
Q 024304           82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI  161 (269)
Q Consensus        82 ~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i  161 (269)
                      ++|.|+     +.++..+...+.++|+.+++++ ++.|+|.=..+     |+++..                ...++..|
T Consensus         2 ~vv~i~-----g~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InSp-----GG~v~~----------------~~~i~~~l   54 (187)
T cd07020           2 YVLEIN-----GAITPATADYLERAIDQAEEGG-ADALIIELDTP-----GGLLDS----------------TREIVQAI   54 (187)
T ss_pred             EEEEEe-----eEEChHHHHHHHHHHHHHHhCC-CCEEEEEEECC-----CCCHHH----------------HHHHHHHH
Confidence            566665     3367778889999999998765 78787763332     444332                22445677


Q ss_pred             hcCCCcEEEEEc---CcccccchhhhhcccEEEEeCCceEecCCCCcccCCCC--------------hHHHHHHhhhCH-
Q 024304          162 RRLPKPVIAMVA---GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAG--------------YGSSIMSRLVGP-  223 (269)
Q Consensus       162 ~~~~kP~Ia~v~---G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~--------------g~~~~l~r~~G~-  223 (269)
                      ..+|||+|++|+   |.|.|||+.|+++||++|++++++|+++++..+..+..              .....+++..|. 
T Consensus        55 ~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~  134 (187)
T cd07020          55 LASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRN  134 (187)
T ss_pred             HhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            889999999999   99999999999999999999999999999885544432              234467888887 


Q ss_pred             -HHHHHHHHcCCCCCHHHHHHcCccceecCCC-cHHHHH
Q 024304          224 -KKAREMWFLARFYTAEEAEKMGLVNTVVPVS-LFVAYL  260 (269)
Q Consensus       224 -~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e-~l~~~a  260 (269)
                       ..+++++++|+.++++||+++||||++++++ ++.+.+
T Consensus       135 ~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~~  173 (187)
T cd07020         135 AEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKKL  173 (187)
T ss_pred             HHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHHc
Confidence             6899999999999999999999999999886 676543

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.69  E-value=1.7e-16  Score=136.22  Aligned_cols=161  Identities=20%  Similarity=0.232  Sum_probs=113.3

Q ss_pred             CEEEEEEcCC--CCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHH
Q 024304           80 GIAKITINRP--DRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL  157 (269)
Q Consensus        80 gv~~I~lnrp--~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l  157 (269)
                      +|++|.++-+  ++.+.....++.+|.++|+.+.+||++++|||+     .||.|+|+..+.             .+.+.
T Consensus         1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~-----~~s~Gg~~~~~~-------------~~~~~   62 (211)
T cd07019           1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR-----VNSPGGSVTASE-------------VIRAE   62 (211)
T ss_pred             CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE-----EcCCCcCHHHHH-------------HHHHH
Confidence            3555555533  122333455689999999999999999999997     789999987642             13344


Q ss_pred             HHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCC------------CCcccCC---CChH---------
Q 024304          158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTG------------PKVGSFD---AGYG---------  213 (269)
Q Consensus       158 ~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~------------~~~Gl~p---~~g~---------  213 (269)
                      +..+..++||+|++++|.|.|+|+.|+++||++++++++.|+...            .++|+-+   -.++         
T Consensus        63 l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~  142 (211)
T cd07019          63 LAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA  142 (211)
T ss_pred             HHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCC
Confidence            567788999999999999999999999999999999999987543            2233211   0100         


Q ss_pred             -----HHHHHhhh-----------------CHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHH
Q 024304          214 -----SSIMSRLV-----------------GPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAY  259 (269)
Q Consensus       214 -----~~~l~r~~-----------------G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~  259 (269)
                           -..+.+.+                 .+. ..+-+..|+.+++++|++.||||++...+++.+.
T Consensus       143 ~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~-~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~~  209 (211)
T cd07019         143 LPPEAQLGLQLSIENGYKRFITLVADARHSTPE-QIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAK  209 (211)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHH-HHHHhcCCcEEeHHHHHHcCCcccCCCHHHHHHH
Confidence                 01111111                 121 2222456889999999999999999887766543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.63  E-value=4.3e-15  Score=127.83  Aligned_cols=152  Identities=22%  Similarity=0.181  Sum_probs=104.2

Q ss_pred             cCCCCCCC-CCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCC
Q 024304           87 NRPDRRNA-FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLP  165 (269)
Q Consensus        87 nrp~~~Na-l~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  165 (269)
                      +++...|+ ++..++.+|.++|+.+++|+++++|||+.     +|.|+++....             .+.+.+..+.. +
T Consensus        13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~-----~s~gg~~~~~~-------------~l~~~l~~~~~-~   73 (214)
T cd07022          13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI-----DSPGGEVAGVF-------------ELADAIRAARA-G   73 (214)
T ss_pred             CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE-----eCCCCcHHHHH-------------HHHHHHHHHhc-C
Confidence            34555554 45789999999999999999999999975     44565544311             12233334444 6


Q ss_pred             CcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCC------------cccCCCC-----h---------HH----H
Q 024304          166 KPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPK------------VGSFDAG-----Y---------GS----S  215 (269)
Q Consensus       166 kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~------------~Gl~p~~-----g---------~~----~  215 (269)
                      |||||+++|.|.|+|+.|+++||++++++++.|+.....            +|+-+..     +         .+    .
T Consensus        74 KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re  153 (214)
T cd07022          74 KPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARA  153 (214)
T ss_pred             CCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHH
Confidence            999999999999999999999999999999998765422            2221000     0         00    0


Q ss_pred             HHH-----------------hhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHH
Q 024304          216 IMS-----------------RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAY  259 (269)
Q Consensus       216 ~l~-----------------r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~  259 (269)
                      .+.                 |.+.....++++  |+.+++++|++.||||++...+++...
T Consensus       154 ~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~~~  212 (214)
T cd07022         154 RLQAEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDALAA  212 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHHHH
Confidence            011                 111233334444  999999999999999999887776543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.60  E-value=6.5e-15  Score=120.97  Aligned_cols=135  Identities=25%  Similarity=0.279  Sum_probs=104.8

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcC
Q 024304           95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG  174 (269)
Q Consensus        95 l~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G  174 (269)
                      ++..++.+|.+.|+.++.|+++++|+|..     .|.|+|+..                ...+...+..++||+|+.++|
T Consensus         8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~-----~s~Gg~~~~----------------~~~i~~~l~~~~kpvva~~~g   66 (161)
T cd00394           8 IEDVSADQLAAQIRFAEADNSVKAIVLEV-----NTPGGRVDA----------------GMNIVDALQASRKPVIAYVGG   66 (161)
T ss_pred             EccchHHHHHHHHHHHHhCCCCceEEEEE-----ECCCcCHHH----------------HHHHHHHHHHhCCCEEEEECC
Confidence            56688999999999999999999999975     356666543                234556777888999999999


Q ss_pred             cccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHH-------------HHHHhh------hCHHHHHHHHHcCCC
Q 024304          175 YAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGS-------------SIMSRL------VGPKKAREMWFLARF  235 (269)
Q Consensus       175 ~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~-------------~~l~r~------~G~~~a~~l~ltg~~  235 (269)
                      .|.++|+.|+++||.+++.+++.|+..++..+........             ..+...      +......+++..+..
T Consensus        67 ~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~  146 (161)
T cd00394          67 QAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLV  146 (161)
T ss_pred             hhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcE
Confidence            9999999999999999999999999988776543322000             011111      233446777888999


Q ss_pred             CCHHHHHHcCcccee
Q 024304          236 YTAEEAEKMGLVNTV  250 (269)
Q Consensus       236 i~a~eA~~~GLv~~v  250 (269)
                      ++++||++.||||+|
T Consensus       147 ~~a~eA~~~GLvD~i  161 (161)
T cd00394         147 LTAQEALEYGLVDAL  161 (161)
T ss_pred             EcHHHHHHcCCcCcC
Confidence            999999999999975

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.60  E-value=3e-15  Score=145.93  Aligned_cols=169  Identities=20%  Similarity=0.240  Sum_probs=122.7

Q ss_pred             cCCEEEEEEcCCCC--CCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHH
Q 024304           78 GEGIAKITINRPDR--RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVL  155 (269)
Q Consensus        78 ~~gv~~I~lnrp~~--~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~  155 (269)
                      ++.|++|+++.+=.  .+..+....+.+.+.++++.+|+++|+|||+-..+     |++....             ..+.
T Consensus       307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSp-----GGs~~as-------------e~i~  368 (584)
T TIGR00705       307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSP-----GGSVFAS-------------EIIR  368 (584)
T ss_pred             CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCC-----CCCHHHH-------------HHHH
Confidence            78899999997632  34444445567888899999999999999996543     2221110             0122


Q ss_pred             HHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceE------ecCC------CCcccCCCChHHHHHH-----
Q 024304          156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF------GQTG------PKVGSFDAGYGSSIMS-----  218 (269)
Q Consensus       156 ~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f------~~~~------~~~Gl~p~~g~~~~l~-----  218 (269)
                      +....+...+||||+.++|.|.+||+.++++||.++|++.+.+      +.++      .++|+.++...+..+.     
T Consensus       369 ~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~  448 (584)
T TIGR00705       369 RELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLL  448 (584)
T ss_pred             HHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCC
Confidence            3344566788999999999999999999999999999999987      4443      4677776554443332     


Q ss_pred             -----------------------hhhCHHH-----HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHH
Q 024304          219 -----------------------RLVGPKK-----AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLT  264 (269)
Q Consensus       219 -----------------------r~~G~~~-----a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la  264 (269)
                                             .+++..+     ..+.+.+|+.++|+||+++||||++...++..+.+.+++
T Consensus       449 ~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~~~~Ai~~a~~la  522 (584)
T TIGR00705       449 RPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGGLDEAVAKAAKLA  522 (584)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCCHHHHHHHHHHHc
Confidence                                   2555555     678889999999999999999999965555444444444

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.55  E-value=3.4e-14  Score=121.69  Aligned_cols=158  Identities=25%  Similarity=0.326  Sum_probs=109.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHH
Q 024304           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (269)
Q Consensus        81 v~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (269)
                      |++|.++-+=...  ...++.+|.++|+.+.+|+++++|||++     +|.|+|+....             .+.+.+..
T Consensus         2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~-----~s~Gg~~~~~~-------------~i~~~i~~   61 (208)
T cd07023           2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI-----NSPGGSVVASE-------------EIYREIRR   61 (208)
T ss_pred             EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE-----ECCCCCHHHHH-------------HHHHHHHH
Confidence            5566665431101  3689999999999999999999999987     36788876521             13345667


Q ss_pred             HhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCC------------cccCCCCh----------------
Q 024304          161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPK------------VGSFDAGY----------------  212 (269)
Q Consensus       161 i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~------------~Gl~p~~g----------------  212 (269)
                      +..++||+||+++|.|.|+|+.|+++||.+++++++.|+.....            +|+-+...                
T Consensus        62 ~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s  141 (208)
T cd07023          62 LRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLT  141 (208)
T ss_pred             HHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCC
Confidence            78889999999999999999999999999999999998754311            22211100                


Q ss_pred             --HHHHHHhhh---------------C--HHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHH
Q 024304          213 --GSSIMSRLV---------------G--PKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAY  259 (269)
Q Consensus       213 --~~~~l~r~~---------------G--~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~  259 (269)
                        ....+...+               |  .... +-++.|..+++++|++.||||.+...++..++
T Consensus       142 ~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~~~  206 (208)
T cd07023         142 EEERAILQALVDDIYDQFVDVVAEGRGMSGERL-DKLADGRVWTGRQALELGLVDELGGLDDAIAK  206 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-HHhcCCcEEEHHHHHHcCCCcccCCHHHHHHh
Confidence              001111111               1  1122 22567889999999999999999876665543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.54  E-value=7.2e-14  Score=114.79  Aligned_cols=129  Identities=21%  Similarity=0.294  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCccc
Q 024304           98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV  177 (269)
Q Consensus        98 ~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~  177 (269)
                      .+...+.+.|+.+..+..+ .+.|.+.|+       ++..                ...+...|..++||+|+.++|.|.
T Consensus        15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG-------~~~~----------------~~~i~~~i~~~~~pvi~~v~g~a~   70 (160)
T cd07016          15 VTAKEFKDALDALGDDSDI-TVRINSPGG-------DVFA----------------GLAIYNALKRHKGKVTVKIDGLAA   70 (160)
T ss_pred             cCHHHHHHHHHhccCCCCE-EEEEECCCC-------CHHH----------------HHHHHHHHHhcCCCEEEEEcchHH
Confidence            5677888889988877433 344454443       2211                234567788899999999999999


Q ss_pred             ccchhhhhcccEEEEeCCceEecCCCCcccCCCChH---------------HHHHHhhhC--HHHHHHHHHcCCCCCHHH
Q 024304          178 GGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYG---------------SSIMSRLVG--PKKAREMWFLARFYTAEE  240 (269)
Q Consensus       178 GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~---------------~~~l~r~~G--~~~a~~l~ltg~~i~a~e  240 (269)
                      |+|+.|+++||+|++++++.|+++....+..+....               ...+.+..|  ....++++..+..++++|
T Consensus        71 s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~e  150 (160)
T cd07016          71 SAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQE  150 (160)
T ss_pred             hHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHH
Confidence            999999999999999999999998776665443221               223677788  667778888888999999


Q ss_pred             HHHcCcccee
Q 024304          241 AEKMGLVNTV  250 (269)
Q Consensus       241 A~~~GLv~~v  250 (269)
                      |+++||||+|
T Consensus       151 A~~~GliD~v  160 (160)
T cd07016         151 AVELGFADEI  160 (160)
T ss_pred             HHHcCCCCcC
Confidence            9999999985

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.54  E-value=1e-13  Score=118.68  Aligned_cols=155  Identities=22%  Similarity=0.346  Sum_probs=108.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHH
Q 024304           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (269)
Q Consensus        81 v~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (269)
                      |++|+++.+     ++ ....+|.++|+.+.+|+++++|||++.     |.|+++..                ...+...
T Consensus         2 v~vi~i~g~-----i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~-----s~Gg~~~~----------------~~~l~~~   54 (207)
T TIGR00706         2 IAILPVSGA-----IA-VSPEDFDKKIKRIKDDKSIKALLLRIN-----SPGGTVVA----------------SEEIYEK   54 (207)
T ss_pred             EEEEEEEEE-----Ee-cCHHHHHHHHHHHhhCCCccEEEEEec-----CCCCCHHH----------------HHHHHHH
Confidence            566666543     21 335789999999999999999999974     45666543                2334556


Q ss_pred             HhcCC--CcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCc------------ccCC------------CCh--
Q 024304          161 IRRLP--KPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV------------GSFD------------AGY--  212 (269)
Q Consensus       161 i~~~~--kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~------------Gl~p------------~~g--  212 (269)
                      |..++  ||+|+.++|.|.|+|+.|+++||.+++++++.++...+..            |+-+            ...  
T Consensus        55 i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~  134 (207)
T TIGR00706        55 LKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRE  134 (207)
T ss_pred             HHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCC
Confidence            66666  9999999999999999999999999999999887644322            2210            000  


Q ss_pred             ----HHHHHH-----------------hhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHH
Q 024304          213 ----GSSIMS-----------------RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSL  263 (269)
Q Consensus       213 ----~~~~l~-----------------r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~l  263 (269)
                          .-..+.                 |-+.....++ ++.++.+++++|++.||||.+...+++.+.+.++
T Consensus       135 ~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~-~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~~  205 (207)
T TIGR00706       135 LTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKK-FADGRVFTGRQALKLRLVDKLGTEDDALKWLAEL  205 (207)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHHh
Confidence                000111                 1222322333 4678999999999999999999988888776654

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.42  E-value=1.5e-12  Score=112.74  Aligned_cols=146  Identities=21%  Similarity=0.150  Sum_probs=105.7

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcC
Q 024304           95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG  174 (269)
Q Consensus        95 l~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G  174 (269)
                      -+..++.+|.++|+++.+|+++++|||+..++ .| ++.+++++                .+....+...+|||||.++|
T Consensus        26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~-gg-~~~~~~el----------------~~~i~~~~~~~kpVia~~~~   87 (222)
T cd07018          26 SSELSLRDLLEALEKAAEDDRIKGIVLDLDGL-SG-GLAKLEEL----------------RQALERFRASGKPVIAYADG   87 (222)
T ss_pred             cCCccHHHHHHHHHHHhcCCCeEEEEEECCCC-CC-CHHHHHHH----------------HHHHHHHHHhCCeEEEEeCC
Confidence            45678899999999999999999999999885 45 55555442                34455666689999999998


Q ss_pred             cccccchhhhhcccEEEEeCCceEecCCCCc------------ccCC---------CChHHH-----------HHH----
Q 024304          175 YAVGGGHVLHMVCDLTIAADNAIFGQTGPKV------------GSFD---------AGYGSS-----------IMS----  218 (269)
Q Consensus       175 ~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~------------Gl~p---------~~g~~~-----------~l~----  218 (269)
                       |.+||+.|+++||.+++.+.+.|+...+..            |+-+         ..+..+           .+.    
T Consensus        88 -~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~  166 (222)
T cd07018          88 -YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLD  166 (222)
T ss_pred             -CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHH
Confidence             889999999999999999999999864332            1111         000000           000    


Q ss_pred             -------------hhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHH
Q 024304          219 -------------RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYL  260 (269)
Q Consensus       219 -------------r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a  260 (269)
                                   |.+.....++ +..|+.+++++|++.||||++...+++.+.+
T Consensus       167 ~~~~~f~~~Va~~R~~~~~~~~~-~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~l  220 (222)
T cd07018         167 SLWDQYLADVAASRGLSPDALEA-LIDLGGDSAEEALEAGLVDGLAYRDELEARL  220 (222)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHH-HHHcCCcHHHHHHHCCCCCcCCcHHHHHHHH
Confidence                         1112222233 3459999999999999999999888887664

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.38  E-value=9.8e-12  Score=103.90  Aligned_cols=145  Identities=24%  Similarity=0.296  Sum_probs=104.6

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHH
Q 024304           82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI  161 (269)
Q Consensus        82 ~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i  161 (269)
                      .+|.++     ..+++.+...+.++|+++++++ ++.|||.=..+     |+++..                ...+...|
T Consensus         2 ~vi~i~-----g~I~~~~~~~l~~~l~~a~~~~-~~~ivl~insp-----GG~v~~----------------~~~I~~~l   54 (178)
T cd07021           2 YVIPIE-----GEIDPGLAAFVERALKEAKEEG-ADAVVLDIDTP-----GGRVDS----------------ALEIVDLI   54 (178)
T ss_pred             EEEEEe-----eEECHHHHHHHHHHHHHHHhCC-CCeEEEEEECc-----CCCHHH----------------HHHHHHHH
Confidence            455564     3477788889999999999887 67777755443     433332                34567788


Q ss_pred             hcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChH--------HHH------HHhhhC--HHH
Q 024304          162 RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYG--------SSI------MSRLVG--PKK  225 (269)
Q Consensus       162 ~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~--------~~~------l~r~~G--~~~  225 (269)
                      .++++|+|+.|+|.|.++|+.|+++||++++++++.|+.+++-.+    .++        ...      +...-|  ...
T Consensus        55 ~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v~~----~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~  130 (178)
T cd07021          55 LNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPIPG----DGNGAADEKVQSYWRAKMRAAAEKKGRDPDI  130 (178)
T ss_pred             HhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeEcC----CCccchhHHHHHHHHHHHHHHHHHhCCCHHH
Confidence            899999999999999999999999999999999999998754422    222        011      222223  445


Q ss_pred             HHHHHHcC-------------CCCCHHHHHHcCccceecCC-CcHH
Q 024304          226 AREMWFLA-------------RFYTAEEAEKMGLVNTVVPV-SLFV  257 (269)
Q Consensus       226 a~~l~ltg-------------~~i~a~eA~~~GLv~~vv~~-e~l~  257 (269)
                      +..|+...             ..++++||++.|++|.+.+. ++|.
T Consensus       131 a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll  176 (178)
T cd07021         131 AEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELL  176 (178)
T ss_pred             HHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHh
Confidence            55555544             37999999999999999864 4443

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.07  E-value=5e-09  Score=86.96  Aligned_cols=138  Identities=22%  Similarity=0.222  Sum_probs=102.6

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEc
Q 024304           94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA  173 (269)
Q Consensus        94 al~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~  173 (269)
                      .+++.+...|.++++.++++ +.+.|+|.=..|     |+++..                ...+...|...++||++.+.
T Consensus         9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~inSP-----GG~v~~----------------~~~I~~~i~~~~~pvv~~v~   66 (172)
T cd07015           9 QITSYTYDQFDRYITIAEQD-NAEAIIIELDTP-----GGRADA----------------AGNIVQRIQQSKIPVIIYVY   66 (172)
T ss_pred             EECHhHHHHHHHHHHHHhcC-CCCeEEEEEECC-----CCCHHH----------------HHHHHHHHHhcCcCEEEEEe
Confidence            47788888999999999876 468887765443     443332                23456677788999999999


Q ss_pred             ---CcccccchhhhhcccEEEEeCCceEecCCCCcccCCC----ChH----HH------HHHhhhC--HHHHHHHHHcCC
Q 024304          174 ---GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDA----GYG----SS------IMSRLVG--PKKAREMWFLAR  234 (269)
Q Consensus       174 ---G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~----~g~----~~------~l~r~~G--~~~a~~l~ltg~  234 (269)
                         |.|.++|..++++||.+++.+++.++...+..|.-+.    ..-    ..      -+.+.-|  ...+..++....
T Consensus        67 p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~  146 (172)
T cd07015          67 PPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDL  146 (172)
T ss_pred             cCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhc
Confidence               9999999999999999999999999998775432110    000    11      1222334  456777788889


Q ss_pred             CCCHHHHHHcCccceecCC
Q 024304          235 FYTAEEAEKMGLVNTVVPV  253 (269)
Q Consensus       235 ~i~a~eA~~~GLv~~vv~~  253 (269)
                      .++++||+++|++|.|+..
T Consensus       147 ~lta~EA~~~G~iD~ia~~  165 (172)
T cd07015         147 SLTPEEALKYGVIEVVARD  165 (172)
T ss_pred             CcCHHHHHHcCCceeeeCC
Confidence            9999999999999999875

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>PRK10949 protease 4; Provisional

Probab=98.96  E-value=2e-08  Score=98.60  Aligned_cols=165  Identities=23%  Similarity=0.313  Sum_probs=110.7

Q ss_pred             cCCEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhh
Q 024304           78 GEGIAKITINRP-----DRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRL  152 (269)
Q Consensus        78 ~~gv~~I~lnrp-----~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~  152 (269)
                      ++.|++|.++-.     ...+.++.   +.+.+.|+++.+|+++|+|||+-..|     |+....             -.
T Consensus       325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSp-----GGs~~a-------------se  383 (618)
T PRK10949        325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSP-----GGSVTA-------------SE  383 (618)
T ss_pred             CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCC-----CCcHHH-------------HH
Confidence            567888887632     22234554   45677799999999999999988765     322211             11


Q ss_pred             hHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCC------------CcccCCCChHH------
Q 024304          153 NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGP------------KVGSFDAGYGS------  214 (269)
Q Consensus       153 ~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~------------~~Gl~p~~g~~------  214 (269)
                      .+.+-...++...||||+.+.+.|..||..++++||.++|.+.+..+...+            ++|+-..+..+      
T Consensus       384 ~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~  463 (618)
T PRK10949        384 VIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV  463 (618)
T ss_pred             HHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCc
Confidence            133334455667899999999999999999999999999999877665332            12321111000      


Q ss_pred             -----------HHHH-----------------hhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHH
Q 024304          215 -----------SIMS-----------------RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLT  264 (269)
Q Consensus       215 -----------~~l~-----------------r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la  264 (269)
                                 ..+.                 |.+......+ +..|+.+++++|++.||||++-..++..+.+.+++
T Consensus       464 ~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~-ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~~a  540 (618)
T PRK10949        464 SITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDK-IAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELA  540 (618)
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHH-HhcCCcccHHHHHHcCCCccCCCHHHHHHHHHHHc
Confidence                       0011                 1112222222 56899999999999999999998888777777665

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.95  E-value=1.4e-08  Score=83.73  Aligned_cols=135  Identities=16%  Similarity=0.173  Sum_probs=95.4

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcC
Q 024304           95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG  174 (269)
Q Consensus        95 l~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G  174 (269)
                      ++..+..++.+.|..++.++..+.|+|.=..+     |+++..                ...++..|...++|+++.+.|
T Consensus         9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSp-----GG~v~~----------------~~~i~~~i~~~~~~v~~~~~g   67 (162)
T cd07013           9 VEDISANQFAAQLLFLGAVNPEKDIYLYINSP-----GGDVFA----------------GMAIYDTIKFIKADVVTIIDG   67 (162)
T ss_pred             ECcHHHHHHHHHHHHHhcCCCCCCEEEEEECC-----CCcHHH----------------HHHHHHHHHhcCCCceEEEEe
Confidence            56788899999999999887777777755443     443321                234566777889999999999


Q ss_pred             cccccchhhhhccc--EEEEeCCceEecCCCCcccCCCChHHH---------------HHHhhhC--HHHHHHHHHcCCC
Q 024304          175 YAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGSS---------------IMSRLVG--PKKAREMWFLARF  235 (269)
Q Consensus       175 ~a~GgG~~lal~~D--~~ia~~~a~f~~~~~~~Gl~p~~g~~~---------------~l~r~~G--~~~a~~l~ltg~~  235 (269)
                      .|.++|..|+++||  .|++.+++.|.+..+..+......-..               .+.+..|  ....++++-.+.-
T Consensus        68 ~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~  147 (162)
T cd07013          68 LAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTW  147 (162)
T ss_pred             ehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCcc
Confidence            99999999999999  699999999987665433221110001               1222223  4444555666677


Q ss_pred             CCHHHHHHcCcccee
Q 024304          236 YTAEEAEKMGLVNTV  250 (269)
Q Consensus       236 i~a~eA~~~GLv~~v  250 (269)
                      ++|+||+++||||++
T Consensus       148 ~sa~eA~~~GliD~i  162 (162)
T cd07013         148 LSAREAVEYGFADTI  162 (162)
T ss_pred             ccHHHHHHcCCCCcC
Confidence            899999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.73  E-value=1.5e-07  Score=78.22  Aligned_cols=135  Identities=19%  Similarity=0.211  Sum_probs=96.6

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcC
Q 024304           95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG  174 (269)
Q Consensus        95 l~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G  174 (269)
                      ++.+...++...+..+..++..+.|+|.=..+     |+|+..                ...+...|...+.|+++.+.|
T Consensus        18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSp-----GG~v~~----------------~~~i~~~l~~~~~~v~t~~~g   76 (171)
T cd07017          18 IDDEVANLIIAQLLYLESEDPKKPIYLYINSP-----GGSVTA----------------GLAIYDTMQYIKPPVSTICLG   76 (171)
T ss_pred             EcHHHHHHHHHHHHHHHccCCCCceEEEEECC-----CCCHHH----------------HHHHHHHHHhcCCCEEEEEEe
Confidence            67788999999999999876656666544333     433332                224455667778999999999


Q ss_pred             cccccchhhhhccc--EEEEeCCceEecCCCCcccCCCChHH---------------HHHHhhhC--HHHHHHHHHcCCC
Q 024304          175 YAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGS---------------SIMSRLVG--PKKAREMWFLARF  235 (269)
Q Consensus       175 ~a~GgG~~lal~~D--~~ia~~~a~f~~~~~~~Gl~p~~g~~---------------~~l~r~~G--~~~a~~l~ltg~~  235 (269)
                      .|.++|.-+++++|  .|++.+++.|.+.++..+......-.               ..+....|  .....+++-.+.-
T Consensus        77 ~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~  156 (171)
T cd07017          77 LAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRY  156 (171)
T ss_pred             EehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcc
Confidence            99999999999999  89999999999988765543221000               01122223  2344556667888


Q ss_pred             CCHHHHHHcCcccee
Q 024304          236 YTAEEAEKMGLVNTV  250 (269)
Q Consensus       236 i~a~eA~~~GLv~~v  250 (269)
                      ++++||+++||+|+|
T Consensus       157 lta~EA~e~GiiD~V  171 (171)
T cd07017         157 MSAEEAKEYGLIDKI  171 (171)
T ss_pred             ccHHHHHHcCCCccC
Confidence            999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.68  E-value=3.6e-07  Score=78.29  Aligned_cols=139  Identities=20%  Similarity=0.203  Sum_probs=97.9

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEc
Q 024304           94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA  173 (269)
Q Consensus        94 al~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~  173 (269)
                      .++.++..++...|..++..+..+.|.|.=..+     |+++..                ...++..|..++.|+++.+.
T Consensus        43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSp-----GG~v~~----------------g~~I~d~i~~~~~~v~t~~~  101 (207)
T PRK12553         43 QVDDASANDVMAQLLVLESIDPDRDITLYINSP-----GGSVTA----------------GDAIYDTIQFIRPDVQTVCT  101 (207)
T ss_pred             eECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCC-----CCcHHH----------------HHHHHHHHHhcCCCcEEEEE
Confidence            378899999999999998765444444433222     333322                23456677778889999999


Q ss_pred             Ccccccchhhhhccc--EEEEeCCceEecCCCCc-ccCCCChH----------------HHHHHhhhC--HHHHHHHHHc
Q 024304          174 GYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKV-GSFDAGYG----------------SSIMSRLVG--PKKAREMWFL  232 (269)
Q Consensus       174 G~a~GgG~~lal~~D--~~ia~~~a~f~~~~~~~-Gl~p~~g~----------------~~~l~r~~G--~~~a~~l~lt  232 (269)
                      |.|.+.|.-|+++||  .|++.+++.|.+..+.. |..-+-..                ...+.+..|  .....+++-.
T Consensus       102 G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~  181 (207)
T PRK12553        102 GQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDR  181 (207)
T ss_pred             eehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhc
Confidence            999999999999999  59999999999887653 21111100                112233334  3455566677


Q ss_pred             CCCCCHHHHHHcCccceecCC
Q 024304          233 ARFYTAEEAEKMGLVNTVVPV  253 (269)
Q Consensus       233 g~~i~a~eA~~~GLv~~vv~~  253 (269)
                      +..++|+||+++||||+|++.
T Consensus       182 ~~~lta~EA~e~GliD~I~~~  202 (207)
T PRK12553        182 DKWLTAEEAKDYGLVDQIITS  202 (207)
T ss_pred             CccccHHHHHHcCCccEEcCc
Confidence            889999999999999999865

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.65  E-value=7.6e-07  Score=75.85  Aligned_cols=140  Identities=19%  Similarity=0.162  Sum_probs=93.2

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEE
Q 024304           93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV  172 (269)
Q Consensus        93 Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v  172 (269)
                      ..++.++...+...|..++.++..+-|.|.=..+     |+|+..                ...++..|...+.|+++.+
T Consensus        38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSp-----GG~v~~----------------g~~I~d~i~~~~~~v~t~~   96 (200)
T PRK00277         38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSP-----GGSVTA----------------GLAIYDTMQFIKPDVSTIC   96 (200)
T ss_pred             CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECC-----CCcHHH----------------HHHHHHHHHhcCCCEEEEE
Confidence            4477889999999999888654444444432222     333222                2244556777788999999


Q ss_pred             cCcccccchhhhhccc--EEEEeCCceEecCCCCcccCCCChHH---------------HHHHhhhC--HHHHHHHHHcC
Q 024304          173 AGYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGS---------------SIMSRLVG--PKKAREMWFLA  233 (269)
Q Consensus       173 ~G~a~GgG~~lal~~D--~~ia~~~a~f~~~~~~~Gl~p~~g~~---------------~~l~r~~G--~~~a~~l~ltg  233 (269)
                      .|.|.++|..|+++++  .|++.+++.|.+..+.-|......-.               ..+....|  .....+++-.+
T Consensus        97 ~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~  176 (200)
T PRK00277         97 IGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRD  176 (200)
T ss_pred             EeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCC
Confidence            9999999999988754  68898999988876543321111000               11233334  34445555667


Q ss_pred             CCCCHHHHHHcCccceecCC
Q 024304          234 RFYTAEEAEKMGLVNTVVPV  253 (269)
Q Consensus       234 ~~i~a~eA~~~GLv~~vv~~  253 (269)
                      .-++|+||+++||+|+|+..
T Consensus       177 ~~lsa~EA~e~GliD~Ii~~  196 (200)
T PRK00277        177 NFMSAEEAKEYGLIDEVLTK  196 (200)
T ss_pred             ccccHHHHHHcCCccEEeec
Confidence            78999999999999999864

>PRK11778 putative inner membrane peptidase; Provisional

Probab=98.60  E-value=6.7e-07  Score=81.33  Aligned_cols=162  Identities=17%  Similarity=0.168  Sum_probs=100.5

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHH
Q 024304           78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL  157 (269)
Q Consensus        78 ~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l  157 (269)
                      .+.|++|.|+.+=..+.. ..+.+++...+..+..+   +.|||+-..|     |+.+...         +.    ....
T Consensus        89 ~~~v~VI~~~G~I~~~~~-~~l~e~i~a~l~~A~~~---~aVvLridSp-----GG~v~~s---------~~----a~~~  146 (330)
T PRK11778         89 KPRLFVLDFKGDIDASEV-ESLREEITAILAVAKPG---DEVLLRLESP-----GGVVHGY---------GL----AASQ  146 (330)
T ss_pred             CCeEEEEEEEEEECCCcc-hhhHHHHHHHHHhccCC---CeEEEEEeCC-----CCchhHH---------HH----HHHH
Confidence            467999998854321211 13445555555555433   4777776554     3322110         00    1112


Q ss_pred             HHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHH-----------------------
Q 024304          158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGS-----------------------  214 (269)
Q Consensus       158 ~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~-----------------------  214 (269)
                      ..+++...||+++.+++.|..||+.|+++||.+++.+.+.++..++... .|.....                       
T Consensus       147 l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~~lLeKlGI~~evi~aG~yK~a~~pf  225 (330)
T PRK11778        147 LQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFHRLLKKHDIDVELHTAGEYKRTLTLF  225 (330)
T ss_pred             HHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHHHHHHHCCCceEEEEecCccCCCCCC
Confidence            3456778899999999999999999999999999999998887543211 1111000                       


Q ss_pred             --------H-----------HHHhhhCHH---HHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHH
Q 024304          215 --------S-----------IMSRLVGPK---KAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMS  262 (269)
Q Consensus       215 --------~-----------~l~r~~G~~---~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~  262 (269)
                              .           .+...+-..   ...+-+.+|+.++|++|++.||||++...+++...+.+
T Consensus       226 ~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~~  295 (330)
T PRK11778        226 GENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELMK  295 (330)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHHh
Confidence                    0           011111111   12334568999999999999999999988877665544

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.59  E-value=1.2e-06  Score=74.53  Aligned_cols=143  Identities=16%  Similarity=0.105  Sum_probs=95.6

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcC
Q 024304           95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG  174 (269)
Q Consensus        95 l~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G  174 (269)
                      ++.++...+...|..++..+..+.|.|.=+.+     |+++..                ...+...|...+.||++.+.|
T Consensus        32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSp-----GG~v~a----------------g~aI~d~i~~~~~~V~t~v~G   90 (197)
T PRK14512         32 INKDLSELFQEKILLLEALDSKKPIFVYIDSE-----GGDIDA----------------GFAIFNMIRFVKPKVFTIGVG   90 (197)
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCCCEEEEEECC-----CCCHHH----------------HHHHHHHHHhCCCCEEEEEEe
Confidence            66788889999888887633334444433222     333322                234556777889999999999


Q ss_pred             cccccchhhhhcccE--EEEeCCceEecCCCCcccCCCChHHH---------------HHHhhhC--HHHHHHHHHcCCC
Q 024304          175 YAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSS---------------IMSRLVG--PKKAREMWFLARF  235 (269)
Q Consensus       175 ~a~GgG~~lal~~D~--~ia~~~a~f~~~~~~~Gl~p~~g~~~---------------~l~r~~G--~~~a~~l~ltg~~  235 (269)
                      .|.+.|.-|+++||-  |++.+++.|.+..+.-+......-..               .+....|  .....+++-...-
T Consensus        91 ~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~  170 (197)
T PRK14512         91 LVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFW  170 (197)
T ss_pred             eeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcc
Confidence            999999999999985  99999999987665433322111000               1122223  2344455555678


Q ss_pred             CCHHHHHHcCccceecCC-CcHHH
Q 024304          236 YTAEEAEKMGLVNTVVPV-SLFVA  258 (269)
Q Consensus       236 i~a~eA~~~GLv~~vv~~-e~l~~  258 (269)
                      ++++||+++||+|+|++. ++|.+
T Consensus       171 lta~EA~~yGliD~I~~~~~~l~~  194 (197)
T PRK14512        171 LDSSSAVKYGLVFEVVETRLELEE  194 (197)
T ss_pred             cCHHHHHHcCCccEeecCcHHhHh
Confidence            999999999999999965 44544

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.58  E-value=2.4e-07  Score=77.61  Aligned_cols=136  Identities=21%  Similarity=0.296  Sum_probs=91.5

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCceEE--EEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEE
Q 024304           95 FRPHTVKELIRAFNDARDDSSVGVI--ILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV  172 (269)
Q Consensus        95 l~~~~~~~L~~al~~~~~d~~~~vv--Vl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v  172 (269)
                      ++.++...+.+.|..++..+..+-+  .|.+.       |+|+..                ...+...|..++.|++..+
T Consensus        25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSp-------GG~v~~----------------g~~i~~~i~~~~~~v~t~~   81 (182)
T PF00574_consen   25 IDEESANRLISQLLYLENEDKNKPINIYINSP-------GGDVDA----------------GLAIYDAIRSSKAPVTTVV   81 (182)
T ss_dssp             BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEEC-------EBCHHH----------------HHHHHHHHHHSSSEEEEEE
T ss_pred             cCHHHHHHHHHHHHHHhccCCCceEEEEEcCC-------CCccHH----------------HHHHHHHHHhcCCCeEEEE
Confidence            7889999999988877433322322  23333       444332                3356678888999999999


Q ss_pred             cCcccccchhhhhcccE--EEEeCCceEecCCCCcccCCCChHHH---------------HHHhhhC--HHHHHHHHHcC
Q 024304          173 AGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSS---------------IMSRLVG--PKKAREMWFLA  233 (269)
Q Consensus       173 ~G~a~GgG~~lal~~D~--~ia~~~a~f~~~~~~~Gl~p~~g~~~---------------~l~r~~G--~~~a~~l~ltg  233 (269)
                      .|.|.+.|.-+.++||.  |++.+++.|.+.++..+......-..               .+....|  .....+++-..
T Consensus        82 ~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~  161 (182)
T PF00574_consen   82 LGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRD  161 (182)
T ss_dssp             EEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSST
T ss_pred             eCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCC
Confidence            99999999999999999  89999999999888765433111111               1122223  23334444445


Q ss_pred             CCCCHHHHHHcCccceecCC
Q 024304          234 RFYTAEEAEKMGLVNTVVPV  253 (269)
Q Consensus       234 ~~i~a~eA~~~GLv~~vv~~  253 (269)
                      .-++++||+++||+|+|+..
T Consensus       162 ~~l~a~EA~~~GiiD~I~~~  181 (182)
T PF00574_consen  162 TWLSAEEALEYGIIDEIIES  181 (182)
T ss_dssp             EEEEHHHHHHHTSSSEEESS
T ss_pred             ccccHHHHHHcCCCCEeccC
Confidence            57899999999999999754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=98.56  E-value=4.1e-08  Score=88.97  Aligned_cols=171  Identities=11%  Similarity=0.067  Sum_probs=136.8

Q ss_pred             CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc-hhhhhhhhHHHH
Q 024304           79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD-YENFGRLNVLDL  157 (269)
Q Consensus        79 ~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~-~~~~~~~~~~~l  157 (269)
                      .++..+.++ |+. |..|.++..+|..-++.++.+..+++.++|+-....|++|.|..++....... ...+  ..++++
T Consensus        65 ~~~~~~dmv-iea-v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~--m~LlEi  140 (380)
T KOG1683|consen   65 TGFANADMV-IEA-VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHW--MQLLEI  140 (380)
T ss_pred             cccccccee-ccc-hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHH--HHHHHH
Confidence            378888887 665 99999999999999999999998899999998888999999998875433211 1221  135678


Q ss_pred             HHHHhcCCCcEEEEEcCcccccc--hhhhhcccEEEEeC--CceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcC
Q 024304          158 QVQIRRLPKPVIAMVAGYAVGGG--HVLHMVCDLTIAAD--NAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLA  233 (269)
Q Consensus       158 ~~~i~~~~kP~Ia~v~G~a~GgG--~~lal~~D~~ia~~--~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg  233 (269)
                      +.....++.|+.+++||.+--|+  +.++-+|+|++...  .-..+..+..+++.-+-+-...+...+|...+-.-+-.+
T Consensus       141 i~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~  220 (380)
T KOG1683|consen  141 ILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADG  220 (380)
T ss_pred             HHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhc
Confidence            88889999999999999998888  88999999999984  333456667777544444555666667777777777788


Q ss_pred             CCCCHHHHHHcCccceecCC
Q 024304          234 RFYTAEEAEKMGLVNTVVPV  253 (269)
Q Consensus       234 ~~i~a~eA~~~GLv~~vv~~  253 (269)
                      .-++-.||.+-|+++.+.|.
T Consensus       221 ~gfdv~eal~~gl~~~~~~r  240 (380)
T KOG1683|consen  221 VGFDVAEALAVGLGDEIGPR  240 (380)
T ss_pred             cCccHHHHHhhccchhccch
Confidence            99999999999999999995

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.54  E-value=8.1e-07  Score=80.89  Aligned_cols=144  Identities=23%  Similarity=0.269  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCccccc
Q 024304          100 VKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG  179 (269)
Q Consensus       100 ~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~Gg  179 (269)
                      .+...+.|+.+..|++++.|||.=..|     |+....             -..+.+.+..+..-. |+++.|.+.|..|
T Consensus        82 ~~~~~~~l~~~~~~~~vk~vvL~inSP-----GG~v~a-------------s~~i~~~l~~l~~~~-PV~v~v~~~AASG  142 (317)
T COG0616          82 GDDIEEILRAARADPSVKAVVLRINSP-----GGSVVA-------------SELIARALKRLRAKK-PVVVSVGGYAASG  142 (317)
T ss_pred             HHHHHHHHHHHhcCCCCceEEEEEECc-----CCchhH-------------HHHHHHHHHHHhhcC-CEEEEECCeecch
Confidence            455666689999999999999976554     332221             111333344554444 9999999999999


Q ss_pred             chhhhhcccEEEEeCCceEecCCCCcccCCCChHHH------------------------------------------HH
Q 024304          180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSS------------------------------------------IM  217 (269)
Q Consensus       180 G~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~------------------------------------------~l  217 (269)
                      |..++++||.+||++.+..|--.+..+ .|......                                          .+
T Consensus       143 GY~IA~aAd~I~a~p~si~GSIGVi~~-~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~~F  221 (317)
T COG0616         143 GYYIALAADKIVADPSSITGSIGVISG-APNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYDEF  221 (317)
T ss_pred             hhhhhccCCEEEecCCceeeeceeEEe-cCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999887655444 22111111                                          01


Q ss_pred             Hhhh-----CHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHH
Q 024304          218 SRLV-----GPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSL  263 (269)
Q Consensus       218 ~r~~-----G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~l  263 (269)
                      ...+     .......-+.+|+-+++++|++.||||++...++....+...
T Consensus       222 ~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~  272 (317)
T COG0616         222 VDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAEL  272 (317)
T ss_pred             HHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHh
Confidence            1111     111223346789999999999999999999887766666554

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=98.49  E-value=5.4e-06  Score=72.84  Aligned_cols=95  Identities=20%  Similarity=0.390  Sum_probs=77.4

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEE
Q 024304           93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV  172 (269)
Q Consensus        93 Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v  172 (269)
                      +.++.+..+++.++++...++..+ .++|...|+       ++..                ..++...+.+++.++++.|
T Consensus        70 ~~I~i~dse~v~raI~~~~~~~~I-dLii~TpGG-------~v~A----------------A~~I~~~l~~~~~~v~v~V  125 (285)
T PF01972_consen   70 RYIDIDDSEFVLRAIREAPKDKPI-DLIIHTPGG-------LVDA----------------AEQIARALREHPAKVTVIV  125 (285)
T ss_pred             eeEcHhhHHHHHHHHHhcCCCCce-EEEEECCCC-------cHHH----------------HHHHHHHHHhCCCCEEEEE
Confidence            568899999999999998877665 344554443       2221                2355668888999999999


Q ss_pred             cCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCC
Q 024304          173 AGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAG  211 (269)
Q Consensus       173 ~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~  211 (269)
                      ..+|+.+|.-++++||-.++.+.+.+|...+.+|-.|..
T Consensus       126 P~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~  164 (285)
T PF01972_consen  126 PHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAA  164 (285)
T ss_pred             CcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChH
Confidence            999999999999999999999999999999999988854

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=98.46  E-value=4.4e-06  Score=70.69  Aligned_cols=138  Identities=17%  Similarity=0.153  Sum_probs=91.6

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEc
Q 024304           94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA  173 (269)
Q Consensus        94 al~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~  173 (269)
                      .++.++..++...|..++.++..+-|.|.=+.+     |+|+..                ...++..+...+.|+...+.
T Consensus        34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSp-----GG~v~~----------------g~~I~d~l~~~~~~v~t~~~   92 (191)
T TIGR00493        34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYINSP-----GGSITA----------------GLAIYDTMQFIKPDVSTICI   92 (191)
T ss_pred             EEChHHHHHHHHHHHHhhccCCCCCEEEEEECC-----CCCHHH----------------HHHHHHHHHhcCCCEEEEEE
Confidence            366778888888888887655444454433322     444322                22344566666667777788


Q ss_pred             Ccccccchhhhhccc--EEEEeCCceEecCCCCcccCCCChHH---------------HHHHhhhC--HHHHHHHHHcCC
Q 024304          174 GYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGS---------------SIMSRLVG--PKKAREMWFLAR  234 (269)
Q Consensus       174 G~a~GgG~~lal~~D--~~ia~~~a~f~~~~~~~Gl~p~~g~~---------------~~l~r~~G--~~~a~~l~ltg~  234 (269)
                      |.|.+.|.-|++++|  .|++.+++.|.+..+.-|......-.               ..+.+..|  .....+++-.+.
T Consensus        93 G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~  172 (191)
T TIGR00493        93 GQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDF  172 (191)
T ss_pred             EeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCc
Confidence            999999998888766  69999999999977654322111111               11333334  345556666778


Q ss_pred             CCCHHHHHHcCccceecC
Q 024304          235 FYTAEEAEKMGLVNTVVP  252 (269)
Q Consensus       235 ~i~a~eA~~~GLv~~vv~  252 (269)
                      -++|+||+++||+|+|+.
T Consensus       173 ~lta~EA~~~GliD~ii~  190 (191)
T TIGR00493       173 FMSAEEAKEYGLIDSVLT  190 (191)
T ss_pred             cCcHHHHHHcCCccEEec
Confidence            899999999999999975

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=98.45  E-value=5e-06  Score=70.77  Aligned_cols=139  Identities=17%  Similarity=0.133  Sum_probs=95.6

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEc
Q 024304           94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA  173 (269)
Q Consensus        94 al~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~  173 (269)
                      .++.++..++...|-.++.+...+-+.|.=+.     .|+|+..                ...++..+...+-||...+.
T Consensus        38 ~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INS-----pGG~v~~----------------g~aIyd~m~~~~~~V~Tv~~   96 (200)
T CHL00028         38 EVDDEIANQLIGLMVYLSIEDDTKDLYLFINS-----PGGSVIS----------------GLAIYDTMQFVKPDVHTICL   96 (200)
T ss_pred             eecHHHHHHHHHHHHHHhccCCCCCEEEEEeC-----CCcchhh----------------HHHHHHHHHhcCCCEEEEEE
Confidence            38889999999999988754333444333222     1333221                23456677788899999999


Q ss_pred             Ccccccchhhhhccc--EEEEeCCceEecCCCCcccCCCChHHH-----------------HHHhhhCH--HHHHHHHHc
Q 024304          174 GYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGSS-----------------IMSRLVGP--KKAREMWFL  232 (269)
Q Consensus       174 G~a~GgG~~lal~~D--~~ia~~~a~f~~~~~~~Gl~p~~g~~~-----------------~l~r~~G~--~~a~~l~lt  232 (269)
                      |.|.+.|.-|++++|  .|++.++++|.+..+..|..- +-...                 .+....|.  ....+++-.
T Consensus        97 G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~-G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r  175 (200)
T CHL00028         97 GLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYE-GQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMER  175 (200)
T ss_pred             EehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence            999999999999999  699999999999887655221 11111                 12222342  233455556


Q ss_pred             CCCCCHHHHHHcCccceecCCC
Q 024304          233 ARFYTAEEAEKMGLVNTVVPVS  254 (269)
Q Consensus       233 g~~i~a~eA~~~GLv~~vv~~e  254 (269)
                      ..-++|+||+++||||+|+.+.
T Consensus       176 ~~~lta~EA~eyGliD~I~~~~  197 (200)
T CHL00028        176 DVFMSATEAKAYGIVDLVAVNN  197 (200)
T ss_pred             CccCCHHHHHHcCCCcEEeecC
Confidence            6789999999999999998653

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=98.42  E-value=1.8e-05  Score=69.83  Aligned_cols=138  Identities=21%  Similarity=0.238  Sum_probs=91.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCceEEEE-EcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEE
Q 024304           92 RNAFRPHTVKELIRAFNDARDDSSVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIA  170 (269)
Q Consensus        92 ~Nal~~~~~~~L~~al~~~~~d~~~~vvVl-~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia  170 (269)
                      ..+++++-.....+.++.+.+.. +=+|-| -+.|  ++. |.+.+.         ... -..+......+.....|+|+
T Consensus        76 ~G~~~~~g~rKa~R~~~lA~~~~-lPvV~lvDtpG--a~~-g~~aE~---------~G~-~~~ia~~~~~~s~~~VP~Is  141 (256)
T PRK12319         76 FGQPHPEGYRKALRLMKQAEKFG-RPVVTFINTAG--AYP-GVGAEE---------RGQ-GEAIARNLMEMSDLKVPIIA  141 (256)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCC--cCC-CHhHHh---------ccH-HHHHHHHHHHHhCCCCCEEE
Confidence            46788999999999999887654 334444 3333  342 433221         011 11234555677789999999


Q ss_pred             EEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCcccee
Q 024304          171 MVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTV  250 (269)
Q Consensus       171 ~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~v  250 (269)
                      .|-|.|.|||......||++++.+++.|+.-       ++.+.+..+-+--  .++.+. -.-..+++.++++.|+||.|
T Consensus       142 VI~G~~~gGgA~a~~~~D~v~m~~~a~~~v~-------~pe~~a~il~~~~--~~a~~a-a~~~~~~a~~l~~~g~iD~i  211 (256)
T PRK12319        142 IIIGEGGSGGALALAVADQVWMLENTMYAVL-------SPEGFASILWKDG--SRATEA-AELMKITAGELLEMGVVDKV  211 (256)
T ss_pred             EEeCCcCcHHHHHhhcCCEEEEecCceEEEc-------CHHHHHHHHhcCc--ccHHHH-HHHcCCCHHHHHHCCCCcEe
Confidence            9999999998888889999999999988752       2333344443321  122221 11227799999999999999


Q ss_pred             cCC
Q 024304          251 VPV  253 (269)
Q Consensus       251 v~~  253 (269)
                      +|.
T Consensus       212 i~e  214 (256)
T PRK12319        212 IPE  214 (256)
T ss_pred             cCC
Confidence            974

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=98.32  E-value=3.7e-05  Score=69.57  Aligned_cols=139  Identities=15%  Similarity=0.175  Sum_probs=91.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEE
Q 024304           92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM  171 (269)
Q Consensus        92 ~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~  171 (269)
                      ..+++++-.....+.++.+++..--=+-++-+.|  +++ |.+..+..         . ...+......+.....|+|+.
T Consensus       132 ~G~~~p~g~rKa~Rlm~lA~~f~lPIItlvDTpG--A~~-G~~AE~~G---------~-~~aiar~l~~~a~~~VP~IsV  198 (322)
T CHL00198        132 FGMPSPGGYRKALRLMKHANKFGLPILTFIDTPG--AWA-GVKAEKLG---------Q-GEAIAVNLREMFSFEVPIICT  198 (322)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCC--cCc-CHHHHHHh---------H-HHHHHHHHHHHHcCCCCEEEE
Confidence            4678999999999999988765422233334333  444 43222110         1 112334455667899999999


Q ss_pred             EcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceec
Q 024304          172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV  251 (269)
Q Consensus       172 v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv  251 (269)
                      |-|.|.|||.-....||++++.++++|+.-       ++-+.+..+-+-  ..++.+. -..-.+++++.+++|+||.|+
T Consensus       199 ViGeggsGGAlal~~aD~V~m~e~a~~sVi-------sPEg~a~Il~~d--~~~a~~a-A~~~~ita~dL~~~giiD~ii  268 (322)
T CHL00198        199 IIGEGGSGGALGIGIGDSIMMLEYAVYTVA-------TPEACAAILWKD--SKKSLDA-AEALKITSEDLKVLGIIDEII  268 (322)
T ss_pred             EeCcccHHHHHhhhcCCeEEEeCCeEEEec-------CHHHHHHHHhcc--hhhHHHH-HHHcCCCHHHHHhCCCCeEec
Confidence            999998888655557999999999998752       333344444332  2222222 333489999999999999999


Q ss_pred             CC
Q 024304          252 PV  253 (269)
Q Consensus       252 ~~  253 (269)
                      |.
T Consensus       269 ~E  270 (322)
T CHL00198        269 PE  270 (322)
T ss_pred             cC
Confidence            73

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.31  E-value=1.8e-05  Score=67.20  Aligned_cols=140  Identities=15%  Similarity=0.122  Sum_probs=94.3

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEc
Q 024304           94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA  173 (269)
Q Consensus        94 al~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~  173 (269)
                      .++.++..++...|..++.+...+-+.|.=+.+     |+|+..                ...++..+...+-||...+.
T Consensus        33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSp-----GG~v~~----------------g~aIyd~m~~~~~~V~t~~~   91 (196)
T PRK12551         33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINSP-----GGSVYD----------------GLGIFDTMQHVKPDVHTVCV   91 (196)
T ss_pred             eecHHHHHHHHHHHHHhhccCCCCCEEEEEeCC-----Ccchhh----------------HHHHHHHHHhcCCCEEEEEE
Confidence            388899999999999887543334343332222     333322                22445677778889999999


Q ss_pred             CcccccchhhhhcccE--EEEeCCceEecCCCCcccCCCChHHH---------------HHHhhhCH--HHHHHHHHcCC
Q 024304          174 GYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSS---------------IMSRLVGP--KKAREMWFLAR  234 (269)
Q Consensus       174 G~a~GgG~~lal~~D~--~ia~~~a~f~~~~~~~Gl~p~~g~~~---------------~l~r~~G~--~~a~~l~ltg~  234 (269)
                      |.|.+.|.-|++++|-  |++.+++.+.+..+.-|......-..               .+.+..|.  ....+++-...
T Consensus        92 G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~  171 (196)
T PRK12551         92 GLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDF  171 (196)
T ss_pred             EEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCc
Confidence            9999999999999985  88999999998777544221111011               12233343  23345555566


Q ss_pred             CCCHHHHHHcCccceecCCC
Q 024304          235 FYTAEEAEKMGLVNTVVPVS  254 (269)
Q Consensus       235 ~i~a~eA~~~GLv~~vv~~e  254 (269)
                      -++|+||+++||+|+|++..
T Consensus       172 ~msa~EA~eyGliD~I~~~~  191 (196)
T PRK12551        172 FMSPSEAVEYGLIDLVIDKR  191 (196)
T ss_pred             CCCHHHHHHcCCCcEEeccC
Confidence            79999999999999999764

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.26  E-value=2.8e-05  Score=67.08  Aligned_cols=136  Identities=16%  Similarity=0.146  Sum_probs=90.6

Q ss_pred             CCCHHHHHHHHHHHHHhhcC---CCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEE
Q 024304           94 AFRPHTVKELIRAFNDARDD---SSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIA  170 (269)
Q Consensus        94 al~~~~~~~L~~al~~~~~d---~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia  170 (269)
                      .++..+...+...|..++..   ..+.+.| -+.|       +++..                ...++..+...+-||..
T Consensus        62 ~Idd~~a~~i~aqLl~L~~~~~~~~I~lyI-NSpG-------Gsv~a----------------GlaIyd~m~~~~~~V~t  117 (221)
T PRK14514         62 QIDDYTANTIQAQLLYLDSVDPGKDISIYI-NSPG-------GSVYA----------------GLGIYDTMQFISSDVAT  117 (221)
T ss_pred             EEcHHHHHHHHHHHHHHhccCCCCCEEEEE-ECCC-------cchhh----------------HHHHHHHHHhcCCCEEE
Confidence            36778888888877666543   3333333 3333       22221                12345677778889999


Q ss_pred             EEcCcccccchhhhhcccE--EEEeCCceEecCCCCcccCCCChHHH---------------HHHhhhCH--HHHHHHHH
Q 024304          171 MVAGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSS---------------IMSRLVGP--KKAREMWF  231 (269)
Q Consensus       171 ~v~G~a~GgG~~lal~~D~--~ia~~~a~f~~~~~~~Gl~p~~g~~~---------------~l~r~~G~--~~a~~l~l  231 (269)
                      .+.|.|.+.|.-|++++|.  |++.+++.|.+..+.-|......-..               .+.+..|.  ....+++-
T Consensus       118 v~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~  197 (221)
T PRK14514        118 ICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSD  197 (221)
T ss_pred             EEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence            9999999999999999996  99999999998777544322111000               12223342  33345555


Q ss_pred             cCCCCCHHHHHHcCccceecCC
Q 024304          232 LARFYTAEEAEKMGLVNTVVPV  253 (269)
Q Consensus       232 tg~~i~a~eA~~~GLv~~vv~~  253 (269)
                      ...-++|+||+++||||+|+..
T Consensus       198 rd~wmtA~EA~eyGliD~Vi~~  219 (221)
T PRK14514        198 RDYWMTAQEAKEYGMIDEVLIK  219 (221)
T ss_pred             cCccCCHHHHHHcCCccEEeec
Confidence            5678999999999999999864

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.25  E-value=3e-05  Score=65.99  Aligned_cols=137  Identities=20%  Similarity=0.242  Sum_probs=94.3

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCC---CceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEE
Q 024304           93 NAFRPHTVKELIRAFNDARDDS---SVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVI  169 (269)
Q Consensus        93 Nal~~~~~~~L~~al~~~~~d~---~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I  169 (269)
                      ..++.++...+...|..++.++   .+.+. |-+.|       +|+..                ...++..|...+-||.
T Consensus        34 ~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~-INSpG-------G~v~~----------------GlaIyd~m~~~~~~V~   89 (201)
T PRK14513         34 TPIESQMANTIVAQLLLLDSQNPEQEIQMY-INCPG-------GEVYA----------------GLAIYDTMRYIKAPVS   89 (201)
T ss_pred             CEEcHHHHHHHHHHHHHhhccCCCCCEEEE-EECCC-------Cchhh----------------HHHHHHHHHhcCCCEE
Confidence            3478888888888887777543   23332 23333       33221                2345667778888999


Q ss_pred             EEEcCcccccchhhhhcccE--EEEeCCceEecCCCCcccCCCChHHH-----------------HHHhhhCH--HHHHH
Q 024304          170 AMVAGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSS-----------------IMSRLVGP--KKARE  228 (269)
Q Consensus       170 a~v~G~a~GgG~~lal~~D~--~ia~~~a~f~~~~~~~Gl~p~~g~~~-----------------~l~r~~G~--~~a~~  228 (269)
                      ..+.|.|.+.+.-|++++|-  |++.+++.+-+..+..|..  +....                 .+.+..|.  ..-.+
T Consensus        90 Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~  167 (201)
T PRK14513         90 TICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLR  167 (201)
T ss_pred             EEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            99999999999999999996  9999999999887765532  11121                 12233342  33344


Q ss_pred             HHHcCCCCCHHHHHHcCccceecCCCc
Q 024304          229 MWFLARFYTAEEAEKMGLVNTVVPVSL  255 (269)
Q Consensus       229 l~ltg~~i~a~eA~~~GLv~~vv~~e~  255 (269)
                      ++-...-++|+||+++||+|+|+++.+
T Consensus       168 ~~~rd~~msa~EA~eyGliD~I~~~~~  194 (201)
T PRK14513        168 DMERDYFMSPEEAKAYGLIDSVIEPTR  194 (201)
T ss_pred             HhccCcccCHHHHHHcCCCcEEeccCC
Confidence            555566799999999999999997643

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=98.25  E-value=6.1e-05  Score=70.03  Aligned_cols=136  Identities=21%  Similarity=0.243  Sum_probs=88.1

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCCceEEEE-EcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEE
Q 024304           93 NAFRPHTVKELIRAFNDARDDSSVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM  171 (269)
Q Consensus        93 Nal~~~~~~~L~~al~~~~~d~~~~vvVl-~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~  171 (269)
                      .+++++-.....+.++.++... +=+|-| -..|  ++ .|.+.++..         . ...+......+....+|+|+.
T Consensus       200 G~~~peGyRKAlR~mklAekf~-lPIVtLVDTpG--A~-pG~~AEe~G---------q-a~aIAr~l~ams~l~VPiISV  265 (431)
T PLN03230        200 AMPQPNGYRKALRFMRHAEKFG-FPILTFVDTPG--AY-AGIKAEELG---------Q-GEAIAFNLREMFGLRVPIIAT  265 (431)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCC--cC-CCHHHHHHh---------H-HHHHHHHHHHHhcCCCCEEEE
Confidence            5788999999999999887654 334444 3333  33 333322211         1 112444566778999999999


Q ss_pred             EcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHh-hhCHHHHHHHHHcCCCCCHHHHHHcCcccee
Q 024304          172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR-LVGPKKAREMWFLARFYTAEEAEKMGLVNTV  250 (269)
Q Consensus       172 v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r-~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~v  250 (269)
                      |-|.+.+||.....+||++++.+++.++.-       ++.+.+..|-+ ..-...+.+    .-.++++++++.|+||.|
T Consensus       266 ViGeGgSGGAlalg~aD~VlMle~A~ysVi-------sPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~I  334 (431)
T PLN03230        266 VIGEGGSGGALAIGCGNRMLMMENAVYYVA-------SPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEI  334 (431)
T ss_pred             EeCCCCcHHHHHhhcCCEEEEecCCEEEec-------CHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEe
Confidence            999996666554557899999999987652       22333434332 211222222    338999999999999999


Q ss_pred             cCC
Q 024304          251 VPV  253 (269)
Q Consensus       251 v~~  253 (269)
                      +|.
T Consensus       335 I~E  337 (431)
T PLN03230        335 VPE  337 (431)
T ss_pred             ccC
Confidence            973

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=98.22  E-value=8.9e-05  Score=67.16  Aligned_cols=139  Identities=20%  Similarity=0.238  Sum_probs=92.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEE
Q 024304           92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM  171 (269)
Q Consensus        92 ~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~  171 (269)
                      ..+++++-.....+.++.++.-. +=+|-|.=.. ++++ |.+.++.         .. ...+......+.....|+|+.
T Consensus       129 ~G~~~peg~rKa~R~m~lA~~f~-lPIVtlvDTp-Ga~~-G~~aE~~---------G~-~~aia~~l~~~a~~~VP~IsV  195 (319)
T PRK05724        129 FGMPRPEGYRKALRLMKMAEKFG-LPIITFIDTP-GAYP-GIGAEER---------GQ-SEAIARNLREMARLKVPIICT  195 (319)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCC-CCCC-CHHHHhc---------cH-HHHHHHHHHHHhCCCCCEEEE
Confidence            46788999999999988887653 4444443322 1443 4433221         01 112445566778999999999


Q ss_pred             EcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceec
Q 024304          172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV  251 (269)
Q Consensus       172 v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv  251 (269)
                      |-|.|.|||......||++++.+++.|+.       +++.+.+..+-+.  ...+.+..- ...++++++++.|+||.|+
T Consensus       196 IiGeg~sGGAla~~~aD~v~m~~~A~~sv-------isPEg~a~Il~~~--~~~a~~aae-~~~ita~~l~~~g~iD~II  265 (319)
T PRK05724        196 VIGEGGSGGALAIGVGDRVLMLEYSTYSV-------ISPEGCASILWKD--ASKAPEAAE-AMKITAQDLKELGIIDEII  265 (319)
T ss_pred             EeCCccHHHHHHHhccCeeeeecCceEee-------cCHHHHHHHHhcC--chhHHHHHH-HcCCCHHHHHHCCCceEec
Confidence            99999888775555699999999998864       3444445555432  223333333 5579999999999999999


Q ss_pred             CC
Q 024304          252 PV  253 (269)
Q Consensus       252 ~~  253 (269)
                      |.
T Consensus       266 ~E  267 (319)
T PRK05724        266 PE  267 (319)
T ss_pred             cC
Confidence            73

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=98.20  E-value=7.8e-05  Score=73.43  Aligned_cols=139  Identities=16%  Similarity=0.143  Sum_probs=91.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEE
Q 024304           92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM  171 (269)
Q Consensus        92 ~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~  171 (269)
                      ..+.+++-+....+.++.++...--=+-++-+.|  +++ |.+.+...         . ...+......+.....|+|+.
T Consensus       220 fG~~~peGyRKAlRlmkLAekfgLPIVtLVDTpG--A~p-G~~AEe~G---------q-~~aIArnl~amasl~VP~ISV  286 (762)
T PLN03229        220 FGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG--AYA-DLKSEELG---------Q-GEAIAHNLRTMFGLKVPIVSI  286 (762)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCC--cCC-CchhHHHh---------H-HHHHHHHHHHHhCCCCCEEEE
Confidence            4688899899999988888765422233334433  443 33332211         1 112344556777899999999


Q ss_pred             EcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceec
Q 024304          172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV  251 (269)
Q Consensus       172 v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv  251 (269)
                      |-|.|.|||.-....||++++.++++|+.       .++.+.+..+-+-..  ++.+ +-..-.+++++.+++|+||.|+
T Consensus       287 ViGeggSGGAlA~g~aD~VlMle~A~~sV-------isPEgaAsILwkd~~--~A~e-AAe~lkiTa~dL~~lGiiD~II  356 (762)
T PLN03229        287 VIGEGGSGGALAIGCANKLLMLENAVFYV-------ASPEACAAILWKSAK--AAPK-AAEKLRITAQELCRLQIADGII  356 (762)
T ss_pred             EeCCcchHHHHHhhcCCEEEEecCCeEEe-------cCHHHHHHHHhcCcc--cHHH-HHHHcCCCHHHHHhCCCCeeec
Confidence            99999888887777899999999988765       233334444433211  2222 2334489999999999999999


Q ss_pred             CC
Q 024304          252 PV  253 (269)
Q Consensus       252 ~~  253 (269)
                      |.
T Consensus       357 pE  358 (762)
T PLN03229        357 PE  358 (762)
T ss_pred             cC
Confidence            73

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=98.15  E-value=0.00014  Score=65.74  Aligned_cols=138  Identities=20%  Similarity=0.217  Sum_probs=89.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCceEEEE-EcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEE
Q 024304           92 RNAFRPHTVKELIRAFNDARDDSSVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIA  170 (269)
Q Consensus        92 ~Nal~~~~~~~L~~al~~~~~d~~~~vvVl-~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia  170 (269)
                      ..+++++-.....+.++.++.-. +=+|-| -+.|  +++ |.+.++..         . ...+......+.....|+|+
T Consensus       129 ~G~~~p~g~rKa~R~m~lA~~f~-iPvVtlvDTpG--a~~-g~~aE~~G---------~-~~aia~~l~a~s~~~VP~Is  194 (316)
T TIGR00513       129 FGMPAPEGYRKALRLMKMAERFK-MPIITFIDTPG--AYP-GIGAEERG---------Q-SEAIARNLREMARLGVPVIC  194 (316)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCC--CCC-CHHHHHHH---------H-HHHHHHHHHHHHcCCCCEEE
Confidence            46788999999999999887654 334444 3333  333 43322211         1 11234455667789999999


Q ss_pred             EEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCcccee
Q 024304          171 MVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTV  250 (269)
Q Consensus       171 ~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~v  250 (269)
                      .|-|.|.|||......||++++.+++.++.       .++.+.+..+-+-  ..++.+..- -..+++.++++.|+||.|
T Consensus       195 VViGeggsGGAla~~~aD~v~m~~~a~~sV-------isPEg~a~Il~kd--~~~a~~aae-~~~~ta~~l~~~G~iD~I  264 (316)
T TIGR00513       195 TVIGEGGSGGALAIGVGDKVNMLEYSTYSV-------ISPEGCAAILWKD--ASKAPKAAE-AMKITAPDLKELGLIDSI  264 (316)
T ss_pred             EEecccccHHHhhhccCCEEEEecCceEEe-------cCHHHHHHHhccc--hhhHHHHHH-HccCCHHHHHHCCCCeEe
Confidence            999999777775555799999999998865       3333444444332  112222211 257789999999999999


Q ss_pred             cCC
Q 024304          251 VPV  253 (269)
Q Consensus       251 v~~  253 (269)
                      +|.
T Consensus       265 I~e  267 (316)
T TIGR00513       265 IPE  267 (316)
T ss_pred             ccC
Confidence            973

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=98.13  E-value=3.5e-05  Score=75.77  Aligned_cols=86  Identities=19%  Similarity=0.197  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCccc
Q 024304           98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV  177 (269)
Q Consensus        98 ~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~  177 (269)
                      ..+.++.++++++.+|+.|++|||.-.+.    .|+++..+.             .+.+.+..+....|||||..++++ 
T Consensus        76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~----~g~~~~~~~-------------ei~~ai~~fk~sgKpVvA~~~~~~-  137 (584)
T TIGR00705        76 ISLFDIVNAIRQAADDRRIEGLVFDLSNF----SGWDSPHLV-------------EIGSALSEFKDSGKPVYAYGTNYS-  137 (584)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEccCC----CCCCHHHHH-------------HHHHHHHHHHhcCCeEEEEEcccc-
Confidence            45679999999999999999999987542    233322211             133444566677899999988775 


Q ss_pred             ccchhhhhcccEEEEeCCceEecC
Q 024304          178 GGGHVLHMVCDLTIAADNAIFGQT  201 (269)
Q Consensus       178 GgG~~lal~~D~~ia~~~a~f~~~  201 (269)
                      -+|+-|+.+||-+++.+.+.++..
T Consensus       138 s~~YylAs~AD~I~~~p~G~v~~~  161 (584)
T TIGR00705       138 QGQYYLASFADEIILNPMGSVDLH  161 (584)
T ss_pred             chhhhhhhhCCEEEECCCceEEee
Confidence            678999999999999999888664

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=98.11  E-value=2.9e-06  Score=69.25  Aligned_cols=103  Identities=24%  Similarity=0.314  Sum_probs=67.2

Q ss_pred             hcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCC------------ccc---------CCCCh-----HH-
Q 024304          162 RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPK------------VGS---------FDAGY-----GS-  214 (269)
Q Consensus       162 ~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~------------~Gl---------~p~~g-----~~-  214 (269)
                      .+..|||||.++|.+..+++.|+++||-+++.+.+.++.....            +|+         +-..+     .+ 
T Consensus         3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s~   82 (154)
T PF01343_consen    3 KASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMSE   82 (154)
T ss_dssp             HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--H
T ss_pred             cccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCCH
Confidence            4688999999999999999999999999999999998876522            111         11111     11 


Q ss_pred             ---HHHHh-----------hhCHHH-----HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHH
Q 024304          215 ---SIMSR-----------LVGPKK-----AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLT  264 (269)
Q Consensus       215 ---~~l~r-----------~~G~~~-----a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la  264 (269)
                         ..+.+           .+-..+     ..+-+..|..+++++|++.||||++...|++.+.+.+++
T Consensus        83 ~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~~  151 (154)
T PF01343_consen   83 EERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKLA  151 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHHc
Confidence               01111           111111     112257899999999999999999999998888877764

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=98.06  E-value=0.00017  Score=64.16  Aligned_cols=161  Identities=17%  Similarity=0.246  Sum_probs=99.0

Q ss_pred             CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCC----CceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHH
Q 024304           80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDS----SVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVL  155 (269)
Q Consensus        80 gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~----~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~  155 (269)
                      .|..+..+..-...++....-+.+.++++.+.+|.    .+-+|.|.-.|      |.-+.+   .. ......  ..+.
T Consensus        60 ~v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSg------GaRlqE---g~-~~L~~~--a~i~  127 (274)
T TIGR03133        60 PVVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTG------GVRLQE---AN-AGLIAI--AEIM  127 (274)
T ss_pred             EEEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCC------CcChhh---hH-HHHHHH--HHHH
Confidence            45555555555667899888899999999987621    12355554433      222221   00 000000  1122


Q ss_pred             HHHHHHhcCCCcEEEEEcCc--ccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCH--HHHHHHHH
Q 024304          156 DLQVQIRRLPKPVIAMVAGY--AVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP--KKAREMWF  231 (269)
Q Consensus       156 ~l~~~i~~~~kP~Ia~v~G~--a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~--~~a~~l~l  231 (269)
                      ..+..+... .|+|+.+-|+  |.||+..++.+||++|+++++.+++..+.+           +....|.  -...+-.|
T Consensus       128 ~~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP~V-----------Ie~~~G~e~~~~~d~~l  195 (274)
T TIGR03133       128 RAILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGPEV-----------IEQEAGVEEFDSRDRAL  195 (274)
T ss_pred             HHHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCHHH-----------HHHhcCCCccCHHHhcc
Confidence            223344455 9999999999  899999999999999999999887743321           1222231  12233344


Q ss_pred             cCCCCCHHHHHHcCccceecCC--CcHHHHHHHHH
Q 024304          232 LARFYTAEEAEKMGLVNTVVPV--SLFVAYLMSLT  264 (269)
Q Consensus       232 tg~~i~a~eA~~~GLv~~vv~~--e~l~~~a~~la  264 (269)
                      .-+.+.+......|++|.++++  +.+.+.+.++.
T Consensus       196 ~~~~lGG~~~~~sG~~D~~v~dd~~a~~~~~~~~l  230 (274)
T TIGR03133       196 VWRTTGGKHRFLSGDADVLVEDDVDAFRAAVIAAL  230 (274)
T ss_pred             cccccchHhHhhcccceEEeCCHHHHHHHHHHHHH
Confidence            4556777778889999999987  45555554443

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>PRK10949 protease 4; Provisional

Probab=97.95  E-value=0.00011  Score=72.58  Aligned_cols=87  Identities=21%  Similarity=0.284  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCccc
Q 024304           98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV  177 (269)
Q Consensus        98 ~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~  177 (269)
                      -.+.++.++++++.+|+.|++|||.-.++    .|..+..+             ..+.+.+..++...||+||..+.+ .
T Consensus        95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~----gG~~~a~~-------------~eI~~ai~~fk~sGKpVvA~~~~~-~  156 (618)
T PRK10949         95 NSLFDIVNTIRQAKDDRNITGIVLDLKNF----AGADQPSM-------------QYIGKALREFRDSGKPVYAVGDSY-S  156 (618)
T ss_pred             ccHHHHHHHHHHHhcCCCceEEEEEeCCC----CCccHHHH-------------HHHHHHHHHHHHhCCeEEEEecCc-c
Confidence            44668999999999999999999998653    12222111             113344556667789999964444 5


Q ss_pred             ccchhhhhcccEEEEeCCceEecCC
Q 024304          178 GGGHVLHMVCDLTIAADNAIFGQTG  202 (269)
Q Consensus       178 GgG~~lal~~D~~ia~~~a~f~~~~  202 (269)
                      -+++-|+.+||-+++.+.+.++...
T Consensus       157 s~~YyLASaAD~I~l~P~G~v~~~G  181 (618)
T PRK10949        157 QGQYYLASFANKIYLSPQGVVDLHG  181 (618)
T ss_pred             chhhhhhhhCCEEEECCCceEEEee
Confidence            6789999999999999998877643

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=97.90  E-value=0.00058  Score=61.17  Aligned_cols=160  Identities=20%  Similarity=0.220  Sum_probs=102.5

Q ss_pred             cCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304           78 GEGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (269)
Q Consensus        78 ~~gv~~I~lnrp-~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~  156 (269)
                      ++.-..|.-|++ -...++.....+.+.++++.+.+.. +-+|.|.-.|+ +     -+.+    ....-...  -....
T Consensus       118 ~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~~-lPlV~l~dSgG-a-----RmqE----g~~sL~~~--ak~~~  184 (285)
T TIGR00515       118 YGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALEDN-CPLIIFSASGG-A-----RMQE----ALLSLMQM--AKTSA  184 (285)
T ss_pred             CCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHcC-CCEEEEEcCCC-c-----cccc----chhHHHhH--HHHHH
Confidence            444344444444 4667999999999999999987543 56777765553 2     1111    00000000  01222


Q ss_pred             HHHHHhcCCCcEEEEEcCcccccchh-hhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCC
Q 024304          157 LQVQIRRLPKPVIAMVAGYAVGGGHV-LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF  235 (269)
Q Consensus       157 l~~~i~~~~kP~Ia~v~G~a~GgG~~-lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~  235 (269)
                      ...++.....|.|+.+-|+|.||+.. +++.+|++|+.+++.+++..+++           +...+|...      .-+.
T Consensus       185 ~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprV-----------ie~ti~e~l------pe~~  247 (285)
T TIGR00515       185 ALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPRV-----------IEQTVREKL------PEGF  247 (285)
T ss_pred             HHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHHH-----------HHHHhcCcc------chhc
Confidence            33456667899999999999999754 67899999999999888744431           222223211      1112


Q ss_pred             CCHHHHHHcCccceecCCCcHHHHHHHHHHhh
Q 024304          236 YTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQ  267 (269)
Q Consensus       236 i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~l  267 (269)
                      -+++-+.+.|+||.|+++.++.+...++...+
T Consensus       248 q~ae~~~~~G~vD~iv~~~~~r~~l~~~L~~~  279 (285)
T TIGR00515       248 QTSEFLLEHGAIDMIVHRPEMKKTLASLLAKL  279 (285)
T ss_pred             CCHHHHHhCCCCcEEECcHHHHHHHHHHHHHH
Confidence            35555778999999999999998888776643

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=97.88  E-value=0.00054  Score=59.83  Aligned_cols=155  Identities=19%  Similarity=0.192  Sum_probs=94.5

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHh-hcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304           78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDA-RDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (269)
Q Consensus        78 ~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~-~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~  156 (269)
                      ++.-..|.=|+|..  .|+.+-...+.+.+..+ +++.++-+|.|.=..  .|-.|..-+...         . ...+..
T Consensus        30 ~G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtp--G~~~g~~aE~~G---------~-~~a~A~   95 (238)
T TIGR03134        30 AGGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDTP--SQAYGRREELLG---------I-NQALAH   95 (238)
T ss_pred             CCEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCC--CCCCCHHHHHHH---------H-HHHHHH
Confidence            44444444445543  68878888888888885 455666666665443  244443333211         1 111233


Q ss_pred             HHH---HHhcCCCcEEEEEcCcccccch-hhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHc
Q 024304          157 LQV---QIRRLPKPVIAMVAGYAVGGGH-VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFL  232 (269)
Q Consensus       157 l~~---~i~~~~kP~Ia~v~G~a~GgG~-~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~lt  232 (269)
                      +..   .....+.|+|+.|-|.+.|||+ .+.+.+|.++|-+++.++.       .++.+++..+-+-.  ..+.++.-.
T Consensus        96 l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~v-------m~~e~aa~I~~~~~--~~~~e~a~~  166 (238)
T TIGR03134        96 LAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVHV-------MDLESMARVTKRSV--EELEALAKS  166 (238)
T ss_pred             HHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEEe-------cCHHHHHHHHccCH--hHHHHHHHh
Confidence            333   4445669999999999998886 4555689988887777654       44444444444333  233444332


Q ss_pred             C--CCCCHHHHHHcCccceecCCCc
Q 024304          233 A--RFYTAEEAEKMGLVNTVVPVSL  255 (269)
Q Consensus       233 g--~~i~a~eA~~~GLv~~vv~~e~  255 (269)
                      -  ...+...+.++|+||.|+++.+
T Consensus       167 ~~~~a~~~~~~~~~G~vd~vi~~~~  191 (238)
T TIGR03134       167 SPVFAPGIENFVKLGGVHALLDVAD  191 (238)
T ss_pred             hhhhccCHHHHHhCCCccEEeCCCC
Confidence            2  2467778999999999998644

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.86  E-value=0.00033  Score=59.23  Aligned_cols=99  Identities=24%  Similarity=0.259  Sum_probs=70.5

Q ss_pred             HHHHHHhcCCCcEEEEEcCcccccchhhhhcccEE--EEeCCceEecCCCCcccCCCChHHH-----------------H
Q 024304          156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT--IAADNAIFGQTGPKVGSFDAGYGSS-----------------I  216 (269)
Q Consensus       156 ~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~--ia~~~a~f~~~~~~~Gl~p~~g~~~-----------------~  216 (269)
                      .++..+...+.||...+-|.|...|..|++++|..  ++.+++++-...+. |.+-+. ++-                 .
T Consensus        76 AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~-a~Di~i~A~ei~~~~~~l~~i  153 (200)
T COG0740          76 AIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQ-ASDIEIHAREILKIKERLNRI  153 (200)
T ss_pred             HHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccC-HHHHHHHHHHHHHHHHHHHHH
Confidence            44667888999999999999999999999999996  99999999887776 433222 121                 1


Q ss_pred             HHhhhCHHHHHH--HHHcCCCCCHHHHHHcCccceecCCCcH
Q 024304          217 MSRLVGPKKARE--MWFLARFYTAEEAEKMGLVNTVVPVSLF  256 (269)
Q Consensus       217 l~r~~G~~~a~~--l~ltg~~i~a~eA~~~GLv~~vv~~e~l  256 (269)
                      +....|...-+-  ..-....++|+||+++||+|+|....+.
T Consensus       154 ~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~  195 (200)
T COG0740         154 YAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREA  195 (200)
T ss_pred             HHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceecccccc
Confidence            112223333321  2223456999999999999999876543

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=97.85  E-value=0.00084  Score=60.38  Aligned_cols=160  Identities=18%  Similarity=0.237  Sum_probs=103.2

Q ss_pred             cCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304           78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (269)
Q Consensus        78 ~~gv~~I~lnrp~-~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~  156 (269)
                      ++.-..|.-|.+. ...+++....+.+.++++.+.... +=+|.|.-.|+      .-..+    +.......  -....
T Consensus       119 ~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~~-lPlV~l~dsgG------armqE----gi~sL~~~--ak~~~  185 (292)
T PRK05654        119 EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEEK-CPLVIFSASGG------ARMQE----GLLSLMQM--AKTSA  185 (292)
T ss_pred             CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHcC-CCEEEEEcCCC------cchhh----hhhHHHhH--HHHHH
Confidence            5544555555554 567999999999999999987653 66777765442      21111    00000000  01222


Q ss_pred             HHHHHhcCCCcEEEEEcCcccccchh-hhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCC
Q 024304          157 LQVQIRRLPKPVIAMVAGYAVGGGHV-LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF  235 (269)
Q Consensus       157 l~~~i~~~~kP~Ia~v~G~a~GgG~~-lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~  235 (269)
                      .+..+.....|.|+.+-|+|.||+.. +++.+|++|+.+++.+++..++           .+...++...      .-+.
T Consensus       186 a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e~l------pe~~  248 (292)
T PRK05654        186 ALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVREKL------PEGF  248 (292)
T ss_pred             HHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhhhh------hhhh
Confidence            33455667899999999999999654 6778999999999988874442           1112222211      1112


Q ss_pred             CCHHHHHHcCccceecCCCcHHHHHHHHHHhh
Q 024304          236 YTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQ  267 (269)
Q Consensus       236 i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~l  267 (269)
                      -+++-+.+.|+||.|+++.++.+...++.+.+
T Consensus       249 ~~ae~~~~~G~vD~Vv~~~e~r~~l~~~L~~~  280 (292)
T PRK05654        249 QRAEFLLEHGAIDMIVHRRELRDTLASLLALH  280 (292)
T ss_pred             cCHHHHHhCCCCcEEECHHHHHHHHHHHHHHH
Confidence            35666778999999999999998888776654

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=97.81  E-value=0.00049  Score=61.95  Aligned_cols=159  Identities=19%  Similarity=0.261  Sum_probs=93.9

Q ss_pred             CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCC----CceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHH
Q 024304           80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDS----SVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVL  155 (269)
Q Consensus        80 gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~----~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~  155 (269)
                      .+..+..+..-...++.....+.+..+++.+.++.    -+-+|+|.-.|+      .-+.+   .. .....  ...+.
T Consensus        69 ~v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGG------aRlqE---g~-~~L~~--~a~i~  136 (301)
T PRK07189         69 PVVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGG------VRLQE---AN-AGLAA--IAEIM  136 (301)
T ss_pred             EEEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCC------cCccc---hH-HHHHH--HHHHH
Confidence            45555565555678999999999999999997765    144555544332      22211   00 00000  01122


Q ss_pred             HHHHHHhcCCCcEEEEEcCc--ccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCH--HHHHHHHH
Q 024304          156 DLQVQIRRLPKPVIAMVAGY--AVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP--KKAREMWF  231 (269)
Q Consensus       156 ~l~~~i~~~~kP~Ia~v~G~--a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~--~~a~~l~l  231 (269)
                      ..+..+... .|+|+.+-|+  |.||+..++.+||++|+++++.+++..+.+           +....|.  -...+-.+
T Consensus       137 ~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaGP~V-----------Ie~~~G~e~~d~~d~~~  204 (301)
T PRK07189        137 RAIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSGPEV-----------IEQEAGVEEFDSRDRAL  204 (301)
T ss_pred             HHHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccCHHH-----------HHHhcCCcccCHHHhcc
Confidence            223344455 9999999999  999999999999999999999887743321           1111121  11122222


Q ss_pred             cCCCCCHHHHHHcCccceecCCC--cHHHHHHH
Q 024304          232 LARFYTAEEAEKMGLVNTVVPVS--LFVAYLMS  262 (269)
Q Consensus       232 tg~~i~a~eA~~~GLv~~vv~~e--~l~~~a~~  262 (269)
                      ..+.+.+......|.+|.++++|  .+.+.+..
T Consensus       205 vw~~lGG~h~~~sG~~D~~v~dd~~a~~~~~~~  237 (301)
T PRK07189        205 VWRTTGGKHRYLSGLADALVDDDVAAFRAAALA  237 (301)
T ss_pred             cccccCcceeeecccceEEeCCHHHHHHHHHHH
Confidence            22223333445689999999875  34444433

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=97.78  E-value=0.002  Score=57.86  Aligned_cols=158  Identities=18%  Similarity=0.186  Sum_probs=99.0

Q ss_pred             CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHH
Q 024304           80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQV  159 (269)
Q Consensus        80 gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~  159 (269)
                      .|+.+..+..-...++....-+.+.++++.+.+.. +-+|++...|+      +-+.+    +...-....+. ...+..
T Consensus       134 ~v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~SGG------ARmQE----g~~sL~qmak~-saa~~~  201 (296)
T CHL00174        134 PVALGVMDFQFMGGSMGSVVGEKITRLIEYATNES-LPLIIVCASGG------ARMQE----GSLSLMQMAKI-SSALYD  201 (296)
T ss_pred             EEEEEEECCcccccCcCHHHHHHHHHHHHHHHHcC-CCEEEEECCCC------ccccc----cchhhhhhHHH-HHHHHH
Confidence            45555555555668999999999999999987654 45666665442      22211    10000011110 001121


Q ss_pred             HHhcCCCcEEEEEcCcccccchhh-hhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCH
Q 024304          160 QIRRLPKPVIAMVAGYAVGGGHVL-HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTA  238 (269)
Q Consensus       160 ~i~~~~kP~Ia~v~G~a~GgG~~l-al~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a  238 (269)
                      ....-..|.|+.+.|+|.||+... ++.||++|+.+++.+++..+++           ....+|..      +.-..=++
T Consensus       202 ~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPrV-----------Ie~t~ge~------lpe~fq~a  264 (296)
T CHL00174        202 YQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRV-----------IEQTLNKT------VPEGSQAA  264 (296)
T ss_pred             HHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHHH-----------HHHhcCCc------CCcccccH
Confidence            123567999999999999998764 7779999998889887643321           11112211      11112245


Q ss_pred             HHHHHcCccceecCCCcHHHHHHHHHHh
Q 024304          239 EEAEKMGLVNTVVPVSLFVAYLMSLTKC  266 (269)
Q Consensus       239 ~eA~~~GLv~~vv~~e~l~~~a~~la~~  266 (269)
                      +-.++.|+||.||+..+|.+...++.+-
T Consensus       265 e~l~~~G~vD~iV~r~~lr~~l~~ll~~  292 (296)
T CHL00174        265 EYLFDKGLFDLIVPRNLLKGVLSELFQL  292 (296)
T ss_pred             HHHHhCcCceEEEcHHHHHHHHHHHHHh
Confidence            5577899999999999999988887654

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.0016  Score=60.95  Aligned_cols=154  Identities=20%  Similarity=0.266  Sum_probs=109.2

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHH
Q 024304           78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL  157 (269)
Q Consensus        78 ~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l  157 (269)
                      +..|..|.++     +.+++.+...+.++++.++++.. .++||.=.-|    .|.                 .....++
T Consensus        25 ~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTP----GGl-----------------~~sm~~i   77 (436)
T COG1030          25 EKKVYVIEID-----GAIDPASADYLQRALQSAEEENA-AAVVLELDTP----GGL-----------------LDSMRQI   77 (436)
T ss_pred             CCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCC----Cch-----------------HHHHHHH
Confidence            5678888885     45999999999999999987763 3444443333    121                 1125567


Q ss_pred             HHHHhcCCCcEEEEEc---CcccccchhhhhcccEEEEeCCceEecCCCCccc---CCCCh-HHHH------HHhhh--C
Q 024304          158 QVQIRRLPKPVIAMVA---GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGS---FDAGY-GSSI------MSRLV--G  222 (269)
Q Consensus       158 ~~~i~~~~kP~Ia~v~---G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl---~p~~g-~~~~------l~r~~--G  222 (269)
                      .+.|.+.+.|++..|.   +.|..+|.-++++||+..+++.+.++--.+-.+-   ..... -...      +++.-  .
T Consensus        78 v~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN  157 (436)
T COG1030          78 VRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRN  157 (436)
T ss_pred             HHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCC
Confidence            8899999999999883   3699999999999999999999999875544332   11111 1111      11221  3


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCccceecCC-CcHHH
Q 024304          223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPV-SLFVA  258 (269)
Q Consensus       223 ~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~-e~l~~  258 (269)
                      ..-|.+++.....++++||++.|++|-+..+ .++..
T Consensus       158 ~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~  194 (436)
T COG1030         158 PTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLK  194 (436)
T ss_pred             hHHHHHHhhhccCCChhHHHhcCccccccCCHHHHHH
Confidence            5577888999999999999999999987643 44443

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=97.53  E-value=0.0024  Score=55.08  Aligned_cols=96  Identities=22%  Similarity=0.293  Sum_probs=68.3

Q ss_pred             HHHHHHhcCCCcEEEEEcCcccccchhhhhcccE--EEEeCCceEecCCCCcccCCCChHHH-----------------H
Q 024304          156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSS-----------------I  216 (269)
Q Consensus       156 ~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~--~ia~~~a~f~~~~~~~Gl~p~~g~~~-----------------~  216 (269)
                      .++..+...+-+|...+.|.|.+.+.-|++++|-  |++.+++.+-+..+..|..  +-...                 .
T Consensus        98 aIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~--G~A~di~~~a~el~~~r~~l~~i  175 (222)
T PRK12552         98 AICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR--GQATDIQIRAKEVLHNKRTMLEI  175 (222)
T ss_pred             HHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc--cCHHHHHHHHHHHHHHHHHHHHH
Confidence            4455677777789999999999999999999995  9999999999888765532  11121                 1


Q ss_pred             HHhhhCHH--HHHHHHHcCCCCCHHHHHHcCccceecCC
Q 024304          217 MSRLVGPK--KAREMWFLARFYTAEEAEKMGLVNTVVPV  253 (269)
Q Consensus       217 l~r~~G~~--~a~~l~ltg~~i~a~eA~~~GLv~~vv~~  253 (269)
                      +....|..  .-.+++-...-++|+||+++||+|+|+..
T Consensus       176 ya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~  214 (222)
T PRK12552        176 LSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLES  214 (222)
T ss_pred             HHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEecc
Confidence            12222322  22233334457999999999999999865

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=97.35  E-value=0.0019  Score=62.43  Aligned_cols=149  Identities=20%  Similarity=0.253  Sum_probs=94.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccc--cccccccCCccchhhhhhhhHHHHH
Q 024304           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGG--DQALRTRDGYADYENFGRLNVLDLQ  158 (269)
Q Consensus        81 v~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~--Dl~~~~~~~~~~~~~~~~~~~~~l~  158 (269)
                      +.++..+..-...++.....+.+.++++.+.+..- -+|.|.-.|      |.  .+.+-.    .......  .+..-+
T Consensus        59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~~-P~v~l~dsg------Ga~~r~~eg~----~~l~~~g--~i~~~~  125 (493)
T PF01039_consen   59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALENGL-PLVYLVDSG------GAFLRMQEGV----ESLMGMG--RIFRAI  125 (493)
T ss_dssp             EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHTE-EEEEEEEES------SBCGGGGGHH----HHHHHHH--HHHHHH
T ss_pred             EEEEEeccceecCCCCcccceeeehHHHHHHHcCC-CcEEecccc------ccccccchhh----hhhhhhH--HHHHHH
Confidence            34444444446678999999999999999987653 444443322      33  332211    0001111  122334


Q ss_pred             HHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC-ceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCC
Q 024304          159 VQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT  237 (269)
Q Consensus       159 ~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~  237 (269)
                      ..+.. ..|+|+++.|+|.|||..+...||++|+.++ +.+++..+.           .+.           ..+|+.++
T Consensus       126 ~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~GP~-----------vv~-----------~~~Ge~~~  182 (493)
T PF01039_consen  126 ARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLAGPR-----------VVE-----------SATGEEVD  182 (493)
T ss_dssp             HHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESSTHH-----------HHH-----------HHHSSCTS
T ss_pred             HHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEecccc-----------ccc-----------cccCcccc
Confidence            45556 9999999999999999999999999999988 888753221           111           24467777


Q ss_pred             HHHH-------HHcCccceecCCC-cHHHHHHHHHH
Q 024304          238 AEEA-------EKMGLVNTVVPVS-LFVAYLMSLTK  265 (269)
Q Consensus       238 a~eA-------~~~GLv~~vv~~e-~l~~~a~~la~  265 (269)
                      .++.       ..-|.+|.++++| +..+.+.++..
T Consensus       183 ~~~lgG~~~h~~~sG~~d~v~~de~~a~~~ir~~ls  218 (493)
T PF01039_consen  183 SEELGGADVHAAKSGVVDYVVDDEEDALAQIRRLLS  218 (493)
T ss_dssp             HHHHHBHHHHHHTSSSSSEEESSHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhcccCCCceEEEechHHHHHHHHHhhc
Confidence            7653       4679999999875 34455555543

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=97.27  E-value=0.0081  Score=52.89  Aligned_cols=158  Identities=18%  Similarity=0.237  Sum_probs=106.7

Q ss_pred             CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHH
Q 024304           80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQV  159 (269)
Q Consensus        80 gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~  159 (269)
                      .++...++..--..++..-.=+.+.++++.+-.+. +.+|+++..|+      .=..+    +..  .-...-.......
T Consensus       123 pvv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k-~P~v~f~aSGG------ARMQE----g~l--SLMQMaktsaAl~  189 (294)
T COG0777         123 PVVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDK-LPLVLFSASGG------ARMQE----GIL--SLMQMAKTSAALK  189 (294)
T ss_pred             EEEEEEEeccccccchhHHHHHHHHHHHHHHHHhC-CCEEEEecCcc------hhHhH----HHH--HHHHHHHHHHHHH
Confidence            45566666655667888888889999999987655 78899888774      11111    000  0000111233445


Q ss_pred             HHhcCCCcEEEEEcCcccccc-hhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCH
Q 024304          160 QIRRLPKPVIAMVAGYAVGGG-HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTA  238 (269)
Q Consensus       160 ~i~~~~kP~Ia~v~G~a~GgG-~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a  238 (269)
                      ++.....|.|+.+.+++.||= ..+++..|+.||.+.|.+++..+++=           -..++.+      |--..=++
T Consensus       190 ~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVI-----------EQTire~------LPegfQ~a  252 (294)
T COG0777         190 RLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVI-----------EQTIREK------LPEGFQTA  252 (294)
T ss_pred             HHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchhh-----------hhhhccc------CCcchhhH
Confidence            777789999999999999884 57999999999999999998766531           1111111      11112345


Q ss_pred             HHHHHcCccceecCCCcHHHHHHHHHHhh
Q 024304          239 EEAEKMGLVNTVVPVSLFVAYLMSLTKCQ  267 (269)
Q Consensus       239 ~eA~~~GLv~~vv~~e~l~~~a~~la~~l  267 (269)
                      +-.++.|+||.||+..++......+...+
T Consensus       253 EfLlehG~iD~iv~R~elr~tla~ll~~~  281 (294)
T COG0777         253 EFLLEHGMIDMIVHRDELRTTLASLLAKL  281 (294)
T ss_pred             HHHHHcCCceeeecHHHHHHHHHHHHHHh
Confidence            55679999999999999988887776554

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=97.26  E-value=0.011  Score=57.35  Aligned_cols=167  Identities=16%  Similarity=0.196  Sum_probs=103.2

Q ss_pred             cCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304           78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (269)
Q Consensus        78 ~~gv~~I~lnrp~-~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~  156 (269)
                      ++.-.-|.-|+|. ...++++...+...+.++.+.+. ++=+|.|.-.++  |..|.+.+.         ... ......
T Consensus       313 ~G~~V~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G--~~~g~~~E~---------~g~-~~~~a~  379 (512)
T TIGR01117       313 NGQSVGIIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG--FLPGVNQEY---------GGI-IRHGAK  379 (512)
T ss_pred             CCEEEEEEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC--ccccHHHHH---------HHH-HHHHHH
Confidence            4433444444544 44689999999999999988654 456666655442  555533221         111 112345


Q ss_pred             HHHHHhcCCCcEEEEEcCcccccchhhhhc-----ccEEEEeCCceEecCCCCcccCCCChHHHHHH-hhhC----HHHH
Q 024304          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMV-----CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMS-RLVG----PKKA  226 (269)
Q Consensus       157 l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~-----~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~-r~~G----~~~a  226 (269)
                      ++..+.....|.|+.|-|.+.|||+ ++++     +|++++.+++.++.-.+.       ++...+- +.+.    ...+
T Consensus       380 ~~~a~~~~~vP~isvi~g~~~Gga~-~am~~~~~~~d~~~a~p~a~~~v~~pe-------~a~~i~~~~~l~~~~~~~~~  451 (512)
T TIGR01117       380 VLYAYSEATVPKVTIITRKAYGGAY-LAMCSKHLGADQVYAWPTAEIAVMGPA-------GAANIIFRKDIKEAKDPAAT  451 (512)
T ss_pred             HHHHHHhCCCCEEEEEcCCCchHHH-HHhccccCCCCEEEEcCCCeEeecCHH-------HHHHHHhhhhcccccCHHHH
Confidence            6667788999999999999988865 4443     999999999888763332       2222222 1111    1111


Q ss_pred             H-HHH--HcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHH
Q 024304          227 R-EMW--FLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTK  265 (269)
Q Consensus       227 ~-~l~--ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~  265 (269)
                      + +.+  ..-+..++..+.+.|+||.|+++.+......+..+
T Consensus       452 ~~~~~~~~~~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~~l~  493 (512)
T TIGR01117       452 RKQKIAEYREEFANPYKAAARGYVDDVIEPKQTRPKIVNALA  493 (512)
T ss_pred             HHHHHHHHHHhhcCHHHHHhcCCCCeeEChHHHHHHHHHHHH
Confidence            1 111  12235578899999999999999887766555443

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=96.56  E-value=0.077  Score=51.57  Aligned_cols=154  Identities=16%  Similarity=0.199  Sum_probs=86.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHH
Q 024304           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (269)
Q Consensus        81 v~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (269)
                      |..+..+..-+..++.....+.+.++++.+.+.. +-+|.|.-.|+ +     .+.+-. ...   ....+  ..... .
T Consensus        84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSgG-a-----rm~eg~-~~l---~~~~~--~~~~~-~  149 (512)
T TIGR01117        84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSGG-A-----RIQEAV-DAL---KGYGD--IFYRN-T  149 (512)
T ss_pred             EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCCC-C-----Cccccc-hhh---hhHHH--HHHHH-H
Confidence            4444444434567999999999999999997765 34555543332 2     221100 000   00111  11111 2


Q ss_pred             HhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCc-eEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHH
Q 024304          161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA-IFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE  239 (269)
Q Consensus       161 i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a-~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~  239 (269)
                      ...-..|.|+++-|+|.||+......||++|+.+++ .+++..+           ..+....|..      .+.+.+.+.
T Consensus       150 ~~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~aGP-----------~vv~~~~Ge~------v~~e~lGGa  212 (512)
T TIGR01117       150 IASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFITGP-----------QVIKTVTGEE------VTAEQLGGA  212 (512)
T ss_pred             HHcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEecCh-----------HHHHhhcCcc------cchhhcchH
Confidence            223458999999999999998887899999999874 4554211           1111112221      122334344


Q ss_pred             HHH--HcCccceecCC-CcHHHHHHHHHH
Q 024304          240 EAE--KMGLVNTVVPV-SLFVAYLMSLTK  265 (269)
Q Consensus       240 eA~--~~GLv~~vv~~-e~l~~~a~~la~  265 (269)
                      +.+  .-|.+|.++++ ++..+.++++..
T Consensus       213 ~~h~~~sGv~d~~~~de~ea~~~~r~~ls  241 (512)
T TIGR01117       213 MAHNSVSGVAHFIAEDDDDCIMLIRRLLS  241 (512)
T ss_pred             HHhccccceeEEecCChHHHHHHHHHHHH
Confidence            433  47999988865 455555555543

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=96.44  E-value=0.0057  Score=54.31  Aligned_cols=86  Identities=26%  Similarity=0.410  Sum_probs=63.0

Q ss_pred             HHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCC
Q 024304          158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT  237 (269)
Q Consensus       158 ~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~  237 (269)
                      +..+..++.|+||.|=|---+||.--...+|.+.+-++++|+.      +-|.+. +..|-+  ...++.+. -..-.|+
T Consensus       181 L~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~-AsILWk--D~~ka~eA-Ae~mkit  250 (317)
T COG0825         181 LREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGC-ASILWK--DASKAKEA-AEAMKIT  250 (317)
T ss_pred             HHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhh-hhhhhc--ChhhhHHH-HHHcCCC
Confidence            4577799999999999998777776666789999999999975      234443 444433  12233332 2334899


Q ss_pred             HHHHHHcCccceecCC
Q 024304          238 AEEAEKMGLVNTVVPV  253 (269)
Q Consensus       238 a~eA~~~GLv~~vv~~  253 (269)
                      +++.+++|+||.|+|.
T Consensus       251 a~dLk~lgiID~II~E  266 (317)
T COG0825         251 AHDLKELGIIDGIIPE  266 (317)
T ss_pred             HHHHHhCCCcceeccC
Confidence            9999999999999984

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=96.41  E-value=0.19  Score=49.49  Aligned_cols=113  Identities=22%  Similarity=0.303  Sum_probs=69.1

Q ss_pred             cCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304           78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (269)
Q Consensus        78 ~~gv~~I~lnrp~-~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~  156 (269)
                      ++.-..|.-|.+. +..+++....+.+.++++.+.+.. +-+|.|.-.++ ++-.+ ..+.+.     ......  .+..
T Consensus       127 ~Gr~V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DSgG-arl~~-q~e~~~-----~~~~~g--~if~  196 (569)
T PLN02820        127 HGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDSGG-ANLPR-QAEVFP-----DRDHFG--RIFY  196 (569)
T ss_pred             CCEEEEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCC-cCCcc-cccccc-----hHhHHH--HHHH
Confidence            3333333444443 567999999999999999987664 44555543332 32211 000000     000000  1222


Q ss_pred             HHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC-ceEec
Q 024304          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQ  200 (269)
Q Consensus       157 l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~  200 (269)
                      -...+.....|.|+.+-|.|.|||..+..+||++|++++ +.+.+
T Consensus       197 ~~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~  241 (569)
T PLN02820        197 NQARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL  241 (569)
T ss_pred             HHHHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe
Confidence            223455567999999999999999999999999999965 65554

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=94.58  E-value=0.38  Score=46.63  Aligned_cols=166  Identities=19%  Similarity=0.223  Sum_probs=98.4

Q ss_pred             cCCEEEEEEcCCCCC-CCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304           78 GEGIAKITINRPDRR-NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (269)
Q Consensus        78 ~~gv~~I~lnrp~~~-Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~  156 (269)
                      ++.-.-|.-|+|... .+++++-.....+.++.++. -++=+|.|.=..  .|..|-+-+.         ... ......
T Consensus       292 ~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dtp--Gf~~g~~~E~---------~g~-~~~ga~  358 (493)
T PF01039_consen  292 GGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDTP--GFMPGPEAER---------AGI-IRAGAR  358 (493)
T ss_dssp             TTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEEC--EB--SHHHHH---------TTH-HHHHHH
T ss_pred             CCcceEEEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeecc--cccccchhhh---------cch-HHHHHH
Confidence            555455555666532 37999999999999998876 456677776443  4665543322         111 123456


Q ss_pred             HHHHHhcCCCcEEEEEcCcccccchhhhhcc----cEEEEeCCceEecCCCCcccCCCChHHHHHHh-hh------C--H
Q 024304          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC----DLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR-LV------G--P  223 (269)
Q Consensus       157 l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~----D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r-~~------G--~  223 (269)
                      +...+..++.|.|..|-|.+.|||.......    |+++|.+++.++.-       ++.++...+-+ ..      +  .
T Consensus       359 ~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~vm-------~~e~a~~i~~~~~~~~~~~~~~~~  431 (493)
T PF01039_consen  359 LLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGVM-------GPEGAASILYRDELEAAEAEGADP  431 (493)
T ss_dssp             HHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEESS--------HHHHHHHHTHHHHHHSCHCCHSH
T ss_pred             HHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeeec-------Chhhhheeeehhhhhhhhcccchh
Confidence            7888999999999999999999887544444    89988888888653       33333333221 11      1  0


Q ss_pred             H--HHHHHHH-cCCCCCHHHHHHcCccceecCCCcHHHHHHHH
Q 024304          224 K--KAREMWF-LARFYTAEEAEKMGLVNTVVPVSLFVAYLMSL  263 (269)
Q Consensus       224 ~--~a~~l~l-tg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~l  263 (269)
                      .  ....+-- .-...++..+...|++|.|+++.+........
T Consensus       432 ~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~l~~~  474 (493)
T PF01039_consen  432 EAQRAEKIAEYEDELSSPYRAASRGYVDDIIDPAETRKVLIAA  474 (493)
T ss_dssp             HHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHHHHHHHH
Confidence            0  1111111 11226889999999999999998877655443

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=94.15  E-value=0.24  Score=47.87  Aligned_cols=109  Identities=17%  Similarity=0.225  Sum_probs=69.8

Q ss_pred             cCCEEEEEEcC-CCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304           78 GEGIAKITINR-PDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (269)
Q Consensus        78 ~~gv~~I~lnr-p~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~  156 (269)
                      ++.-+.|..|. +.+..++.+-..+.+.++.+.+.++..-.+.+..+.|.       .+.+    .........+  ++.
T Consensus        89 ~Gr~~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgGa-------ri~~----~v~~l~g~g~--iF~  155 (526)
T COG4799          89 NGRKVFVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGGA-------RIQE----GVPSLAGYGR--IFY  155 (526)
T ss_pred             CCeEEEEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEccccc-------cccc----CccccccchH--HHH
Confidence            33334444443 44667888888888989898888776555555555442       2211    0111111111  222


Q ss_pred             HHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC-ceEec
Q 024304          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQ  200 (269)
Q Consensus       157 l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~  200 (269)
                      -+.++... .|.|++|-|.|.|||+-+-..||++|+.++ +.+.+
T Consensus       156 ~~a~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~~~mfl  199 (526)
T COG4799         156 RNARASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQSYMFL  199 (526)
T ss_pred             HHHHhccC-CCEEEEEEecCcccccccccccceEEEEcCCccEEe
Confidence            23355555 999999999999999999999999999988 44433

>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.92  E-value=0.49  Score=41.49  Aligned_cols=136  Identities=19%  Similarity=0.212  Sum_probs=75.6

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEc
Q 024304           94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA  173 (269)
Q Consensus        94 al~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~  173 (269)
                      .++.++-+.+...|-.++.++.-|=|.+.=+.|     |+++..                ...++..+..+.-||-...-
T Consensus       100 ~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSP-----GG~vta----------------glAIYDtMq~ik~~V~Tic~  158 (275)
T KOG0840|consen  100 PIDDDVANLVIAQLLYLDSEDPKKPIYLYINSP-----GGSVTA----------------GLAIYDTMQYIKPDVSTICV  158 (275)
T ss_pred             cCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCC-----CCccch----------------hhhHHHHHHhhCCCceeeeh
Confidence            377788888888887777666667666655443     444321                11233344445555555556


Q ss_pred             Ccccccchhhhhcc--cEEEEeCCceEecCCCCcccCCCChHHHHHH-----------------hhhCHH--HHHHHHHc
Q 024304          174 GYAVGGGHVLHMVC--DLTIAADNAIFGQTGPKVGSFDAGYGSSIMS-----------------RLVGPK--KAREMWFL  232 (269)
Q Consensus       174 G~a~GgG~~lal~~--D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~-----------------r~~G~~--~a~~l~lt  232 (269)
                      |.|.+-|.-|..+.  -.|++-+++++-...+.-|  ..+...-...                 +..|..  ...+-+-.
T Consensus       159 G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gg--a~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dR  236 (275)
T KOG0840|consen  159 GLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGG--AGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDMDR  236 (275)
T ss_pred             hhHHhHHHHHHhcCCCcceeecCCceeEEeccCCC--cCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhhcc
Confidence            77777666554433  3566666666655444444  1222222111                 111211  11111233


Q ss_pred             CCCCCHHHHHHcCccceecC
Q 024304          233 ARFYTAEEAEKMGLVNTVVP  252 (269)
Q Consensus       233 g~~i~a~eA~~~GLv~~vv~  252 (269)
                      -+.++++||+++||+|+|+.
T Consensus       237 d~fmsa~EA~eyGliD~v~~  256 (275)
T KOG0840|consen  237 DRFMSAEEAKEYGLIDKVID  256 (275)
T ss_pred             cccCCHHHHHHhcchhhhhc
Confidence            56799999999999999975

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=93.65  E-value=3  Score=41.20  Aligned_cols=148  Identities=10%  Similarity=0.075  Sum_probs=94.1

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEE
Q 024304           93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV  172 (269)
Q Consensus        93 Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v  172 (269)
                      .+++.+-.....+.++.++. -++-+|-|.=..  .|..|.+.+.-         .. ......+...+.....|.|+.|
T Consensus       380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~p--Gf~~G~~~E~~---------G~-~~~~a~l~~A~a~~~VP~isvi  446 (569)
T PLN02820        380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNIT--GFMVGSRSEAS---------GI-AKAGAKMVMAVACAKVPKITII  446 (569)
T ss_pred             CccCHHHHHHHHHHHHHHHh-cCCCEEEEEECC--CCCCCHHHHHh---------hH-HHHHHHHHHHHHhCCCCEEEEE
Confidence            56888888888888888765 456666665443  37666554431         11 2235567778889999999999


Q ss_pred             cCcccccchhhhh----cccEEEEeCCceEecCCCCcccCCCChHHHHHHhh-h------------CHHHH-HHH--HHc
Q 024304          173 AGYAVGGGHVLHM----VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL-V------------GPKKA-REM--WFL  232 (269)
Q Consensus       173 ~G~a~GgG~~lal----~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~-~------------G~~~a-~~l--~lt  232 (269)
                      -|.+.|+|..-.+    ..|++++.+++.++.       .++.++...+.+. +            -...+ ++.  -..
T Consensus       447 ~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~v-------mg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  519 (569)
T PLN02820        447 VGGSFGAGNYGMCGRAYSPNFLFMWPNARIGV-------MGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAY  519 (569)
T ss_pred             ECCcchHHHHHhcCcCCCCCEEEECCCCeEEe-------cCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHH
Confidence            9999998764333    568888877777654       4444444444321 1            11111 111  112


Q ss_pred             CCCCCHHHHHHcCccceecCCCcHHHHH
Q 024304          233 ARFYTAEEAEKMGLVNTVVPVSLFVAYL  260 (269)
Q Consensus       233 g~~i~a~eA~~~GLv~~vv~~e~l~~~a  260 (269)
                      -+..++-.|...|++|.|+++.+-....
T Consensus       520 ~~~~~p~~aa~~~~vD~VIdP~dTR~~l  547 (569)
T PLN02820        520 EREANPYYSTARLWDDGVIDPADTRRVL  547 (569)
T ss_pred             HHhCCHHHHHHcCCcCcccCHHHHHHHH
Confidence            2356778888999999999886654433

>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3

Probab=91.44  E-value=0.46  Score=43.13  Aligned_cols=74  Identities=27%  Similarity=0.433  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHhhcCC---CceEEEE-EcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEc
Q 024304           98 HTVKELIRAFNDARDDS---SVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA  173 (269)
Q Consensus        98 ~~~~~L~~al~~~~~d~---~~~vvVl-~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~  173 (269)
                      ....++.++++.+...+   .+.+||| +|.|+                   .++..-++-..+.+.|..++.|||++| 
T Consensus        55 ~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs-------------------~eDL~~FN~e~varai~~~~~PvisaI-  114 (319)
T PF02601_consen   55 GAAASIVSALRKANEMGQADDFDVIIIIRGGGS-------------------IEDLWAFNDEEVARAIAASPIPVISAI-  114 (319)
T ss_pred             chHHHHHHHHHHHHhccccccccEEEEecCCCC-------------------hHHhcccChHHHHHHHHhCCCCEEEec-
Confidence            34567888888887654   5667776 55432                   111223344567889999999999954 


Q ss_pred             Ccccccchh-----hhhcccEEEEeCCce
Q 024304          174 GYAVGGGHV-----LHMVCDLTIAADNAI  197 (269)
Q Consensus       174 G~a~GgG~~-----lal~~D~~ia~~~a~  197 (269)
                            |++     .=+.+|+|..|+++.
T Consensus       115 ------GHe~D~ti~D~vAd~ra~TPtaa  137 (319)
T PF02601_consen  115 ------GHETDFTIADFVADLRAPTPTAA  137 (319)
T ss_pred             ------CCCCCchHHHHHHHhhCCCHHHH
Confidence                  554     345778888877654

1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity

>TIGR00237 xseA exodeoxyribonuclease VII, large subunit

Probab=90.47  E-value=0.61  Score=44.44  Aligned_cols=73  Identities=25%  Similarity=0.371  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHhhcCCCceEEEE-EcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCcc
Q 024304           98 HTVKELIRAFNDARDDSSVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYA  176 (269)
Q Consensus        98 ~~~~~L~~al~~~~~d~~~~vvVl-~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a  176 (269)
                      +...++..+++.+...+++.+||| +|.|+                   .++..-++-..+.+.++.+|.|||++|    
T Consensus       170 ~a~~~i~~al~~~~~~~~~dviii~RGGGs-------------------~eDL~~Fn~e~~~rai~~~~~Pvis~i----  226 (432)
T TIGR00237       170 GAVQSIVESIELANTKNECDVLIVGRGGGS-------------------LEDLWSFNDEKVARAIFLSKIPIISAV----  226 (432)
T ss_pred             cHHHHHHHHHHHhhcCCCCCEEEEecCCCC-------------------HHHhhhcCcHHHHHHHHcCCCCEEEec----
Confidence            445678888888877666777777 44332                   112223344567889999999999954    


Q ss_pred             cccchh-----hhhcccEEEEeCCc
Q 024304          177 VGGGHV-----LHMVCDLTIAADNA  196 (269)
Q Consensus       177 ~GgG~~-----lal~~D~~ia~~~a  196 (269)
                         |+|     .=+.+|.|..|+++
T Consensus       227 ---GHe~D~ti~D~vAd~ra~TPta  248 (432)
T TIGR00237       227 ---GHETDFTISDFVADLRAPTPSA  248 (432)
T ss_pred             ---CcCCCccHHHHhhhccCCCcHH
Confidence               554     34578888888764

This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.

>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=88.95  E-value=1.2  Score=39.69  Aligned_cols=53  Identities=23%  Similarity=0.325  Sum_probs=36.1

Q ss_pred             HHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCccc
Q 024304          103 LIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV  177 (269)
Q Consensus       103 L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~  177 (269)
                      +.++|+.+++||+.++||+-|+-+      ++-++          .     ..++... ....||+|+.+.|.+.
T Consensus       188 fid~L~~fe~Dp~T~~ivmiGEiG------G~aEe----------~-----AA~~i~~-~~~~KPVVa~iaG~ta  240 (293)
T COG0074         188 FIDALEMFEADPETEAIVMIGEIG------GPAEE----------E-----AAEYIKA-NATRKPVVAYIAGRTA  240 (293)
T ss_pred             HHHHHHHHhcCccccEEEEEecCC------CcHHH----------H-----HHHHHHH-hccCCCEEEEEeccCC
Confidence            457889999999999999999842      11111          1     1223333 3345999999999865

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=88.52  E-value=11  Score=36.65  Aligned_cols=163  Identities=17%  Similarity=0.190  Sum_probs=101.1

Q ss_pred             cCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304           78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (269)
Q Consensus        78 ~~gv~~I~lnrp~-~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~  156 (269)
                      ++.-.=|.=|.|. ...+|+.+-...-.+.+ ++.+.-++-.|.|.=..  .|..|-|.+.-         +. ...-..
T Consensus       322 ~G~pVGiIANqp~~~~G~l~~~sa~KaArFI-~~cd~~~iPlv~L~d~p--GFm~G~~~E~~---------gi-ik~Gak  388 (526)
T COG4799         322 DGRPVGIIANQPRHLGGVLDIDSADKAARFI-RLCDAFNIPLVFLVDTP--GFMPGTDQEYG---------GI-IKHGAK  388 (526)
T ss_pred             CCEEEEEEecCccccccccchHHHHHHHHHH-HhhhccCCCeEEEeCCC--CCCCChhHHhC---------hH-HHhhhH
Confidence            4433334445554 44599999999888888 45555667777776543  59989776541         11 122456


Q ss_pred             HHHHHhcCCCcEEEEEcCcccccchhh----hhcccEEEEeCCceEecCCCCcccCCCChHHHHHHh-hhC-HHH-H--H
Q 024304          157 LQVQIRRLPKPVIAMVAGYAVGGGHVL----HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR-LVG-PKK-A--R  227 (269)
Q Consensus       157 l~~~i~~~~kP~Ia~v~G~a~GgG~~l----al~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r-~~G-~~~-a--~  227 (269)
                      +...+.....|.|..+-|-+.|||...    ++.+|+.+|.+++.++.-       -+.++...+.+ .+. ..+ .  +
T Consensus       389 l~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~iaVM-------G~egAv~i~~~k~l~~~~~~~~~~  461 (526)
T COG4799         389 LLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEIAVM-------GPEGAVSILYRKELAAAERPEERE  461 (526)
T ss_pred             HHhhHhhccCCeEEEEecccccceeeeecCccCCCceeEecCcceeeec-------CHHHHHHHHHHHHhhcccCchhHH
Confidence            778889999999999999999999643    345777777777777652       22333333322 211 000 0  0


Q ss_pred             ----H-H--HHcCCCCCHHHHHHcCccceecCCCcHHHHH
Q 024304          228 ----E-M--WFLARFYTAEEAEKMGLVNTVVPVSLFVAYL  260 (269)
Q Consensus       228 ----~-l--~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a  260 (269)
                          . +  -+.-+..+.--|.+.|++|.|.++.+.....
T Consensus       462 ~~~~~~~~~eY~~~~~~p~~aa~r~~iD~vI~p~~tR~~L  501 (526)
T COG4799         462 ALLRKQLIAEYEEQFSNPYYAAERGYIDAVIDPADTRAVL  501 (526)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHhCCCCcccCHHHHHHHH
Confidence                0 1  1222335666778899999999886554443

>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed

Probab=87.70  E-value=1.2  Score=42.49  Aligned_cols=73  Identities=26%  Similarity=0.361  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHhhcCCCceEEEE-EcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCcc
Q 024304           98 HTVKELIRAFNDARDDSSVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYA  176 (269)
Q Consensus        98 ~~~~~L~~al~~~~~d~~~~vvVl-~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a  176 (269)
                      ....++.++++.+.... +.+||| +|.|+                   .++..-++-..+.+.++.++.|||++|    
T Consensus       176 ~A~~~i~~al~~~~~~~-~Dviii~RGGGS-------------------~eDL~~Fn~e~v~~ai~~~~~Pvis~I----  231 (438)
T PRK00286        176 GAAASIVAAIERANARG-EDVLIVARGGGS-------------------LEDLWAFNDEAVARAIAASRIPVISAV----  231 (438)
T ss_pred             cHHHHHHHHHHHhcCCC-CCEEEEecCCCC-------------------HHHhhccCcHHHHHHHHcCCCCEEEec----
Confidence            34567788888776543 556655 44332                   112223344567889999999999954    


Q ss_pred             cccchh-----hhhcccEEEEeCCce
Q 024304          177 VGGGHV-----LHMVCDLTIAADNAI  197 (269)
Q Consensus       177 ~GgG~~-----lal~~D~~ia~~~a~  197 (269)
                         |+|     .=+.+|.|..|+++.
T Consensus       232 ---GHE~D~tl~D~vAd~ra~TPtaa  254 (438)
T PRK00286        232 ---GHETDFTIADFVADLRAPTPTAA  254 (438)
T ss_pred             ---cCCCCccHHHHhhhccCCChHHH
Confidence               554     345788888887653

>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]

Probab=86.27  E-value=1.6  Score=41.47  Aligned_cols=72  Identities=29%  Similarity=0.421  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHhhcCCCceEEEEE-cCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCccc
Q 024304           99 TVKELIRAFNDARDDSSVGVIILT-GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV  177 (269)
Q Consensus        99 ~~~~L~~al~~~~~d~~~~vvVl~-g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~  177 (269)
                      ...++.++++.+.+.+++.++|+. |.|+                   -++..-++-..+.+.++.+..|+|++|     
T Consensus       177 A~~eIv~aI~~an~~~~~DvlIVaRGGGS-------------------iEDLW~FNdE~vaRAi~~s~iPvISAV-----  232 (440)
T COG1570         177 AAEEIVEAIERANQRGDVDVLIVARGGGS-------------------IEDLWAFNDEIVARAIAASRIPVISAV-----  232 (440)
T ss_pred             cHHHHHHHHHHhhccCCCCEEEEecCcch-------------------HHHHhccChHHHHHHHHhCCCCeEeec-----
Confidence            455777777777777777777763 3221                   111222333457789999999999966     


Q ss_pred             ccchh-----hhhcccEEEEeCCc
Q 024304          178 GGGHV-----LHMVCDLTIAADNA  196 (269)
Q Consensus       178 GgG~~-----lal~~D~~ia~~~a  196 (269)
                        |+|     .=+.+|+|-.|+++
T Consensus       233 --GHEtD~tL~DfVAD~RApTPTa  254 (440)
T COG1570         233 --GHETDFTLADFVADLRAPTPTA  254 (440)
T ss_pred             --ccCCCccHHHhhhhccCCCchH
Confidence              443     23467777777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	269
2iex_A	272	Crystal Structure Of Dihydroxynapthoic Acid Synthet		2e-71
4els_A	285	Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Co		2e-70
3t88_A	289	Crystal Structure Of Escherichia Coli Menb In Compl		2e-70
4eml_A	275	Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoy		3e-69
2uzf_A	273	Crystal Structure Of Staphylococcus Aureus 1,4-Dihy		8e-68
3h02_A	288	2.15 Angstrom Resolution Crystal Structure Of Napht		7e-67
1rjm_A	339	Crystal Structure Of Menb (rv0548c) From Mycobacter		2e-48
3t8a_A	334	Crystal Structure Of Mycobacterium Tuberculosis Men		3e-48
1q51_A	314	Crystal Structure Of Mycobacterium Tuberculosis Men		3e-48
3moy_A	263	Crystal Structure Of Probable Enoyl-Coa Hydratase F		3e-24
3h81_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		3e-23
3pzk_A	257	Crystal Structure Of The Mycobacterium Tuberculosis		3e-23
3q0j_A	258	Crystal Structure Of The Mycobacterium Tuberculosis		3e-23
1dub_A	261	2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph		1e-22
1ey3_A	258	Structure Of Enoyl-Coa Hydratase Complexed With The		3e-22
1mj3_A	260	Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata		3e-22
1uiy_A	253	Crystal Structure Of Enoyl-Coa Hydratase From Therm		5e-22
3kqf_A	265	1.8 Angstrom Resolution Crystal Structure Of Enoyl-		7e-22
3myb_A	286	Crystal Structure Of Enoyl-Coa Hydratase Mycobacter		8e-22
2hw5_A	286	The Crystal Structure Of Human Enoyl-Coenzyme A (Co		2e-21
3ome_A	282	Crystal Structure Of A Probable Enoyl-Coa Hydratase		3e-21
3t3w_A	279	Crystal Structure Of Probable Enoyl-Coa Hydratase F		9e-21
2vsu_F	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		8e-20
2pbp_A	258	Crystal Structure Of Enoyl-Coa Hydrates Subunit I (		9e-20
2vss_F	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		1e-19
2vsu_E	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		2e-19
2vsu_C	275	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		2e-19
2vsu_A	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		2e-19
2vss_E	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		3e-19
2j5i_B	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		3e-19
2j5i_A	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		3e-19
2j5i_I	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		3e-19
1jxz_A	269	Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe		4e-19
3qka_A	261	Crystal Structure Of Enoyl-Coa Hydratase Echa5 From		1e-18
1nzy_A	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		1e-18
1nzy_B	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		1e-18
3he2_A	264	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		2e-18
4di1_A	277	Crystal Structure Of Enoyl-Coa Hydratase Echa17 Fro		3e-18
4fzw_A	258	Crystal Structure Of The Paaf-paag Hydratase-isomer		4e-18
4f47_A	278	The Structure Of Enoyl-Coa Hydratase Echa19 From My		4e-17
3hrx_A	254	Crystal Structure Of Phenylacetic Acid Degradation		5e-17
3qyr_A	253	Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M		8e-17
3p85_A	270	Crystal Structure Enoyl-Coa Hydratase From Mycobact		8e-17
3sll_A	290	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-16
3r0o_A	273	Crystal Structure Of Carnitinyl-Coa Hydratase From		2e-16
3p5m_A	255	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		6e-16
2vx2_A	287	Crystal Structure Of Human Enoyl Coenzyme A Hydrata		8e-16
2f6q_A	280	The Crystal Structure Of Human Peroxisomal Delta3,		4e-15
3tlf_A	274	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		9e-15
3rsi_A	265	The Structure Of A Putative Enoyl-Coa HydrataseISOM		6e-14
3pe8_A	256	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		1e-13
3r9t_A	267	Structure Of Echa1_1 From Mycobacterium Paratubercu		1e-13
3fdu_A	266	Crystal Structure Of A Putative Enoyl-Coa Hydratase		1e-13
3r9s_A	267	Structure Of A Carnitinyl-Coa Dehydratase From Myco		2e-13
3i47_A	268	Crystal Structure Of Putative Enoyl Coa HydrataseIS		3e-13
3qre_A	298	Crystal Structure Of An Enoyl-Coa Hydratase Echa12_		3e-13
3trr_A	256	Crystal Structure Of A Probable Enoyl-Coa Hydratase		3e-13
3qxz_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		1e-12
2vre_A	296	Crystal Structure Of Human Peroxisomal Delta3,5, De		2e-12
2fbm_A	291	Acetyltransferase Domain Of Cdy1 Length = 291		2e-12
3lke_A	263	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		2e-12
3r9q_A	262	Structure Of A Probable Enoyl-Coa HydrataseISOMERAS		3e-12
2fw2_A	260	Catalytic Domain Of Cdy Length = 260		3e-12
3qmj_A	256	Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr		4e-12
1dci_A	275	Dienoyl-Coa Isomerase Length = 275		8e-12
4fzw_C	274	Crystal Structure Of The Paaf-paag Hydratase-isomer		1e-11
3qk8_A	272	Crystal Structure Of Enoyl-Coa Hydratase Echa15 Fro		1e-11
3swx_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		3e-11
1hzd_A	272	Crystal Structure Of Human Auh Protein, An Rna-Bind		4e-11
2ej5_A	257	Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr		1e-10
3oc7_A	267	Crystal Structure Of An Enoyl-Coa Hydratase From My		1e-10
3l3s_A	263	Crystal Structure Of An Enoyl-Coa HydrotaseISOMERAS		2e-10
2ppy_A	265	Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) F		4e-10
2q35_A	243	Crystal Structure Of The Y82f Variant Of Ech2 Decar		5e-10
2pg8_A	417	Crystal Structure Of R254k Mutanat Of Dpgc With Bou		7e-10
3qxi_A	265	Crystal Structure Of Enoyl-Coa Hydratase Echa1 From		8e-10
2np9_A	440	Crystal Structure Of A Dioxygenase In The Crotonase		9e-10
1ef8_A	261	Crystal Structure Of Methylmalonyl Coa Decarboxylas		2e-09
2q2x_A	243	Crystal Structure Of The Ech2 Decarboxylase Domain		1e-08
3q1t_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		4e-08
2gtr_A	261	Human Chromodomain Y-Like Protein Length = 261		6e-08
3njb_A	333	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		7e-08
3bpt_A	363	Crystal Structure Of Human Beta-Hydroxyisobutyryl-C		8e-08
3pea_A	261	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		9e-08
3hin_A	275	Crystal Structure Of Putative Enoyl-Coa Hydratase F		9e-08
2a7k_A	250	Carboxymethylproline Synthase (carb) From Pectobact		1e-07
1wdk_A	715	Fatty Acid Beta-Oxidation Multienzyme Complex From		2e-07
3zwb_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		2e-07
3rrv_A	276	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		2e-07
3zw8_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		3e-07
2x58_A	727	The Crystal Structure Of Mfe1 Liganded With Coa Len		3e-07
4j2u_A	365	Crystal Structure Of An Enoyl-coa Hydratase From Rh		1e-06
1sg4_A	260	Crystal Structure Of Human Mitochondrial Delta3-del		3e-06
3isa_A	254	Crystal Structure Of Putative Enoyl-Coa HydrataseIS		5e-06
1xx4_A	261	Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Co		6e-06
3h0u_A	289	Crystal Structure Of A Putative Enoyl-Coa Hydratase		6e-06
3gkb_A	287	Crystal Structure Of A Putative Enoyl-coa Hydratase		7e-06
2wtb_A	725	Arabidopsis Thaliana Multifuctional Protein, Mfp2 L		1e-05
3g64_A	279	Crystal Structure Of Putative Enoyl-Coa Hydratase F		1e-05
4hdt_A	353	Crystal Structure Of A Carnitinyl-Coa Dehydratase F		6e-05
2j5g_D	263	The Native Structure Of A Beta-Diketone Hydrolase F		7e-05
2j5g_A	263	The Native Structure Of A Beta-Diketone Hydrolase F		7e-05
3m6m_A	305	Crystal Structure Of Rpff Complexed With Rec Domain		4e-04

>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272

Iteration: 1
 Score =  265 bits (678), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 130/188 (69%), Positives = 151/188 (80%), Gaps = 2/188 (1%)
Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
           ++ DIIYE     GIAKITINRP+  NAFRP TV E+I AF  ARDDS++GVIILTG G 
Sbjct: 10  DYEDIIYETY--NGIAKITINRPEVHNAFRPKTVNEMIDAFTKARDDSNIGVIILTGAGG 67
Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
           +AFCSGGDQ +R   GY   +   RLNVLDLQ  IR +PKPVIAMVAGYA+GGGHVLH+V
Sbjct: 68  KAFCSGGDQKVRGHGGYVGEDEIPRLNVLDLQRLIRVIPKPVIAMVAGYAIGGGHVLHVV 127
Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
           CDLTIAADNAIFGQTGPKVGSFD GYG+  ++R+VG KKARE+W+L R YTA+EA +MGL
Sbjct: 128 CDLTIAADNAIFGQTGPKVGSFDGGYGAGYLARIVGHKKAREIWYLCRQYTAQEALEMGL 187
Query: 247 VNTVVPVS 254
           VN VVP+ 
Sbjct: 188 VNKVVPLE 195

>pdb|4ELS|A Chain A, Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Coenzyme A Synthases (Menb) In Complex With Bicarbonate Length = 285

Iteration: 1
 Score =  261 bits (668), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 135/210 (64%), Positives = 158/210 (75%), Gaps = 11/210 (5%)
Query: 46  IHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIR 105
           ++  V  HD      C E    F DI YEK+  +GIAKITINRP  RNAFRP TVKE+I+
Sbjct: 9   LYAPVEWHD------CSEG---FEDIRYEKST-DGIAKITINRPQVRNAFRPLTVKEMIQ 58
Query: 106 AFNDARDDSSVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRL 164
           A  DAR D ++GVIILTG G +AFCSGGDQ +R    GY D      LNVLD Q QIR  
Sbjct: 59  ALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTC 118
Query: 165 PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224
           PKPV+AMVAGY++GGGHVLHM+CDLTIAADNAIFGQTGPKVGSFD G+G+S M+R+VG K
Sbjct: 119 PKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQK 178
Query: 225 KAREMWFLARFYTAEEAEKMGLVNTVVPVS 254
           KARE+WFL R Y A++A  MGLVNTVVP++
Sbjct: 179 KAREIWFLCRQYDAKQALDMGLVNTVVPLA 208

>pdb|3T88|A Chain A, Crystal Structure Of Escherichia Coli Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 289

Iteration: 1
 Score =  261 bits (668), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 135/210 (64%), Positives = 158/210 (75%), Gaps = 11/210 (5%)
Query: 46  IHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIR 105
           ++  V  HD      C E    F DI YEK+  +GIAKITINRP  RNAFRP TVKE+I+
Sbjct: 13  LYAPVEWHD------CSEG---FEDIRYEKST-DGIAKITINRPQVRNAFRPLTVKEMIQ 62
Query: 106 AFNDARDDSSVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRL 164
           A  DAR D ++GVIILTG G +AFCSGGDQ +R    GY D      LNVLD Q QIR  
Sbjct: 63  ALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTC 122
Query: 165 PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224
           PKPV+AMVAGY++GGGHVLHM+CDLTIAADNAIFGQTGPKVGSFD G+G+S M+R+VG K
Sbjct: 123 PKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQK 182
Query: 225 KAREMWFLARFYTAEEAEKMGLVNTVVPVS 254
           KARE+WFL R Y A++A  MGLVNTVVP++
Sbjct: 183 KAREIWFLCRQYDAKQALDMGLVNTVVPLA 212

>pdb|4EML|A Chain A, Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoyl-Coenzyme A Synthase (Menb) In Complex With Bicarbonate Length = 275

Iteration: 1
 Score =  258 bits (658), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 130/202 (64%), Positives = 156/202 (77%), Gaps = 12/202 (5%)
Query: 57  WRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSV 116
           W IA       + DI+Y KA   GIAKI INRP +RNAFRP TV EL  AF +AR+D+ +
Sbjct: 3   WHIA-----KHYDDILYYKA--GGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRI 55
Query: 117 GVIILTGKGTE-----AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171
           GV++LTG G       AFCSGGDQ++R   GY D +   RLNVLDLQ  IR +PK VIA+
Sbjct: 56  GVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIAL 115
Query: 172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWF 231
           VAGYA+GGGHVLH+VCDLTIAADNAIFGQTGPKVGSFD G+GSS ++R+VG KKARE+W+
Sbjct: 116 VAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWY 175
Query: 232 LARFYTAEEAEKMGLVNTVVPV 253
           L R Y+A+EAE+MG+VNTVVPV
Sbjct: 176 LCRQYSAQEAERMGMVNTVVPV 197

>pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273

Iteration: 1
 Score =  253 bits (646), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 128/192 (66%), Positives = 150/192 (78%), Gaps = 2/192 (1%)
Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
           E+  E+ +I YE    EGIAK+TINRP+ RNAF P TV E+I AF+ ARDD +V VI+LT
Sbjct: 7   ETLREYDEIKYE--FYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLT 64
Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
           G+G  AFCSGGDQ  R   GY   +   RLNVLDLQ  IR +PKPVIAMV GYAVGGG+V
Sbjct: 65  GEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNV 124
Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
           L++VCDLTIAADNAIFGQTGPKVGSFDAGYGS  ++R+VG KKARE+W+L R Y A+EA 
Sbjct: 125 LNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEAL 184
Query: 243 KMGLVNTVVPVS 254
            MGLVNTVVP+ 
Sbjct: 185 DMGLVNTVVPLE 196

>pdb|3H02|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of Naphthoate Synthase From Salmonella Typhimurium. Length = 288

Iteration: 1
 Score =  250 bits (638), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 132/221 (59%), Positives = 158/221 (71%), Gaps = 11/221 (4%)
Query: 35  NNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNA 94
           +NA +      ++  V  HD      C E    +TDI YEK+  +GIAKITINRP  RNA
Sbjct: 1   SNAXIYPDETXLYAPVEWHD------CSEG---YTDIRYEKST-DGIAKITINRPQVRNA 50
Query: 95  FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLN 153
           FRP TVKE I+A  DAR D +VGVIILTG+G +AFC+GGDQ +R    GY D      LN
Sbjct: 51  FRPLTVKEXIQALADARYDDNVGVIILTGEGDKAFCAGGDQKVRGDYGGYQDDSGVHHLN 110
Query: 154 VLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYG 213
           VLD Q QIR  PKPV+A VAGY++GGGHVLH  CDLTIAA+NAIFGQTGPKVGSFD G+G
Sbjct: 111 VLDFQRQIRTCPKPVVAXVAGYSIGGGHVLHXXCDLTIAAENAIFGQTGPKVGSFDGGWG 170
Query: 214 SSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVS 254
           +S  +R+VG KKARE+WFL R Y A++A   GLVNTVVP++
Sbjct: 171 ASYXARIVGQKKAREIWFLCRQYDAQQALDXGLVNTVVPLA 211

>pdb|1RJM|A Chain A, Crystal Structure Of Menb (rv0548c) From Mycobacterium Tuberculosis Length = 339

Iteration: 1
 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 102/211 (48%), Positives = 132/211 (62%), Gaps = 19/211 (9%)
Query: 57  WRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSV 116
           WR+   +   + TDI Y + V +   ++  NRP+ RNAFRPHTV EL R  + AR    V
Sbjct: 50  WRLV--DGFDDLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDV 107
Query: 117 GVIILTGKGTE------AFCSGGDQALRTRDGY----------ADYENFGRLNVLDLQVQ 160
           GV++LTG G        AFCSGGDQ +R R GY           D    GRL++L++Q  
Sbjct: 108 GVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRL 167
Query: 161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSIMSR 219
           IR +PK VI +V G+A GGGH LH+VCDLT+A+ + A F QT   VGSFD GYGS+ ++R
Sbjct: 168 IRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLAR 227
Query: 220 LVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250
            VG K ARE++FL R YTAE+  +MG VN V
Sbjct: 228 QVGQKFAREIFFLGRTYTAEQMHQMGAVNAV 258

>pdb|3T8A|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 334

Iteration: 1
 Score =  188 bits (478), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 102/211 (48%), Positives = 132/211 (62%), Gaps = 19/211 (9%)
Query: 57  WRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSV 116
           WR+   +   + TDI Y + V +   ++  NRP+ RNAFRPHTV EL R  + AR    V
Sbjct: 45  WRLV--DGFDDLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDV 102
Query: 117 GVIILTGKGTE------AFCSGGDQALRTRDGY----------ADYENFGRLNVLDLQVQ 160
           GV++LTG G        AFCSGGDQ +R R GY           D    GRL++L++Q  
Sbjct: 103 GVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRL 162
Query: 161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSIMSR 219
           IR +PK VI +V G+A GGGH LH+VCDLT+A+ + A F QT   VGSFD GYGS+ ++R
Sbjct: 163 IRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLAR 222
Query: 220 LVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250
            VG K ARE++FL R YTAE+  +MG VN V
Sbjct: 223 QVGQKFAREIFFLGRTYTAEQMHQMGAVNAV 253

>pdb|1Q51|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Menb In Complex With Acetoacetyl-Coenzyme A, A Key Enzyme In Vitamin K2 Biosynthesis Length = 314

Iteration: 1
 Score =  188 bits (478), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 102/211 (48%), Positives = 132/211 (62%), Gaps = 19/211 (9%)
Query: 57  WRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSV 116
           WR+   +   + TDI Y + V +   ++  NRP+ RNAFRPHTV EL R  + AR    V
Sbjct: 25  WRLV--DGFDDLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDV 82
Query: 117 GVIILTGKGTE------AFCSGGDQALRTRDGY----------ADYENFGRLNVLDLQVQ 160
           GV++LTG G        AFCSGGDQ +R R GY           D    GRL++L++Q  
Sbjct: 83  GVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRL 142
Query: 161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSIMSR 219
           IR +PK VI +V G+A GGGH LH+VCDLT+A+ + A F QT   VGSFD GYGS+ ++R
Sbjct: 143 IRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLAR 202
Query: 220 LVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250
            VG K ARE++FL R YTAE+  +MG VN V
Sbjct: 203 QVGQKFAREIFFLGRTYTAEQMHQMGAVNAV 233

>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 100/191 (52%), Gaps = 5/191 (2%)
Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
           S T +T I   + V  G+  I ++RPD  NA       E++ A  D   D  +G I++TG
Sbjct: 4   SMTTYTTIATSRPVA-GVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTG 62
Query: 124 KGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
               AF +G D A               L+  D   Q+R   KP++A VAGYA+GGG  L
Sbjct: 63  S-ERAFAAGADIAEMVTLTPHQARERNLLSGWDSLTQVR---KPIVAAVAGYALGGGCEL 118
Query: 184 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEK 243
            M+CDL IAAD A FGQ    +G      G+  ++R VG  KA ++    R  TAEEAE+
Sbjct: 119 AMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAER 178
Query: 244 MGLVNTVVPVS 254
           +GLV+ +VP +
Sbjct: 179 VGLVSRIVPAA 189

>pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 97/191 (50%), Gaps = 18/191 (9%)
Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           +  I+ E+    GI  IT+NRP   NA     + E+  A  +  DD  +G II+TG   +
Sbjct: 24  YETILVERDQRVGI--ITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSA-K 80
Query: 128 AFCSGGDQALRTRDGYAD------YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
           AF +G D        +AD      +  +G+L  +           P IA VAGYA+GGG 
Sbjct: 81  AFAAGADIKEMADLTFADAFTADFFATWGKLAAVR---------TPTIAAVAGYALGGGC 131
Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEA 241
            L M+CD+ IAAD A FGQ   K+G      GS  ++R +G  KA ++    R   A EA
Sbjct: 132 ELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEA 191
Query: 242 EKMGLVNTVVP 252
           E+ GLV+ VVP
Sbjct: 192 ERSGLVSRVVP 202

>pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 97/191 (50%), Gaps = 18/191 (9%)
Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           +  I+ E+    GI  IT+NRP   NA     + E+  A  +  DD  +G II+TG   +
Sbjct: 3   YETILVERDQRVGI--ITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSA-K 59
Query: 128 AFCSGGDQALRTRDGYAD------YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
           AF +G D        +AD      +  +G+L  +           P IA VAGYA+GGG 
Sbjct: 60  AFAAGADIKEMADLTFADAFTADFFATWGKLAAVR---------TPTIAAVAGYALGGGC 110
Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEA 241
            L M+CD+ IAAD A FGQ   K+G      GS  ++R +G  KA ++    R   A EA
Sbjct: 111 ELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEA 170
Query: 242 EKMGLVNTVVP 252
           E+ GLV+ VVP
Sbjct: 171 ERSGLVSRVVP 181

>pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258

Iteration: 1
 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 97/191 (50%), Gaps = 18/191 (9%)
Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           +  I+ E+    GI  IT+NRP   NA     + E+  A  +  DD  +G II+TG   +
Sbjct: 4   YETILVERDQRVGI--ITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSA-K 60
Query: 128 AFCSGGDQALRTRDGYAD------YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
           AF +G D        +AD      +  +G+L  +           P IA VAGYA+GGG 
Sbjct: 61  AFAAGADIKEMADLTFADAFTADFFATWGKLAAVR---------TPTIAAVAGYALGGGC 111
Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEA 241
            L M+CD+ IAAD A FGQ   K+G      GS  ++R +G  KA ++    R   A EA
Sbjct: 112 ELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEA 171
Query: 242 EKMGLVNTVVP 252
           E+ GLV+ VVP
Sbjct: 172 ERSGLVSRVVP 182

>pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261

Iteration: 1
 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 99/194 (51%), Gaps = 5/194 (2%)
Query: 65  GTEFTDIIYEK-AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
           G  F  II EK      +  I +NRP   NA     ++EL +A     +D +VG I+LTG
Sbjct: 1   GANFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTG 60
Query: 124 KGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
            G +AF +G D        + D  +   L+  D    I R+ KPVIA V GYA+GGG  L
Sbjct: 61  -GEKAFAAGADIKEMQNRTFQDCYSGKFLSHWD---HITRIKKPVIAAVNGYALGGGCEL 116
Query: 184 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEK 243
            M+CD+  A + A FGQ    +G+     G+  ++R VG   A EM       +A++A++
Sbjct: 117 AMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQ 176
Query: 244 MGLVNTVVPVSLFV 257
            GLV+ + PV   V
Sbjct: 177 AGLVSKIFPVETLV 190

>pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 98/191 (51%), Gaps = 5/191 (2%)
Query: 68  FTDIIYEK-AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
           F  II EK      +  I +NRP   NA     ++EL +A     +D +VG I+LTG G 
Sbjct: 1   FQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTG-GE 59
Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
           +AF +G D        + D  +   L+  D    I R+ KPVIA V GYA+GGG  L M+
Sbjct: 60  KAFAAGADIKEMQNRTFQDCYSGKFLSHWD---HITRIKKPVIAAVNGYALGGGCELAMM 116
Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
           CD+  A + A FGQ    +G+     G+  ++R VG   A EM       +A++A++ GL
Sbjct: 117 CDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGL 176
Query: 247 VNTVVPVSLFV 257
           V+ + PV   V
Sbjct: 177 VSKIFPVETLV 187

>pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 98/191 (51%), Gaps = 5/191 (2%)
Query: 68  FTDIIYEK-AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
           F  II EK      +  I +NRP   NA     ++EL +A     +D +VG I+LTG G 
Sbjct: 3   FQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTG-GE 61
Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
           +AF +G D        + D  +   L+  D    I R+ KPVIA V GYA+GGG  L M+
Sbjct: 62  KAFAAGADIKEMQNRTFQDCYSGKFLSHWD---HITRIKKPVIAAVNGYALGGGCELAMM 118
Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
           CD+  A + A FGQ    +G+     G+  ++R VG   A EM       +A++A++ GL
Sbjct: 119 CDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGL 178
Query: 247 VNTVVPVSLFV 257
           V+ + PV   V
Sbjct: 179 VSKIFPVETLV 189

>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253

Iteration: 1
 Score =  101 bits (251), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 91/174 (52%), Gaps = 4/174 (2%)
Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTR 140
           +A + +N P+RRN   P     L++A +D   D  V  ++LTG+G +AF +G D A   R
Sbjct: 9   VAVVFLNDPERRNPLSPEXALSLLQALDDLEADPGVRAVVLTGRG-KAFSAGADLAFLER 67
Query: 141 DGYADYENFGR--LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
                 E   R  L++  L  ++   PKP +A V G AV GG  L + CDL +  + A  
Sbjct: 68  VTELGAEENYRHSLSLXRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVXDEEARL 127
Query: 199 GQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           G T  K+G F A   S I+ R VG K A+++    R   A EA+ +GLVN + P
Sbjct: 128 GYTEVKIG-FVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAP 180

>pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265

Iteration: 1
 Score =  100 bits (250), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 100/177 (56%), Gaps = 3/177 (1%)
Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTR 140
           + KI++NR  + N+     ++EL        ++++  V+ILTG G +AFC+G D  L+ R
Sbjct: 19  VVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGAD--LKER 76
Query: 141 DGYADYENFGRLNVLDLQVQ-IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG 199
            G  + +    ++ +    + + +LP+PVIA + G A+GGG  L + CD  IAA++A  G
Sbjct: 77  AGXNEEQVRHAVSXIRTTXEXVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLG 136
Query: 200 QTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLF 256
            T   +       G+  + RL+G  +A+E+ +  R  +A+EA++ GLV  VVPV L 
Sbjct: 137 LTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYGLVEFVVPVHLL 193

>pdb|3MYB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Mycobacterium Smegm Length = 286

Iteration: 1
 Score =  100 bits (249), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/174 (38%), Positives = 93/174 (53%), Gaps = 6/174 (3%)
Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-QALR 138
           G+  +T+NRP   NA     +  L  AF    +D SV  ++L   G +AFC+G D + +R
Sbjct: 35  GVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASG-KAFCAGHDLKEMR 93
Query: 139 TRDGYADYEN-FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAI 197
                  YE  F R    D+ + I+RLP PVIA V G A   G  L  +CDL +A  +A 
Sbjct: 94  AEPSREYYEKLFARCT--DVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDAR 151
Query: 198 FGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
           F  +G  VG F +  G ++ SR VG K A EM     F +A++A+ +GLVN VV
Sbjct: 152 FAVSGINVGLFCSTPGVAL-SRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVV 204

>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 98/199 (49%), Gaps = 13/199 (6%)
Query: 64  SGTEFTDIIYEK-AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
           SG  F  II EK      +  I +NRP   NA     + EL +A     +D +VG I+LT
Sbjct: 25  SGANFEYIIAEKRGKNNTVGLIQLNRPKALNALCDGLIDELNQALKIFEEDPAVGAIVLT 84
Query: 123 GKGTEAFCSGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVG 178
           G G +AF +G D    Q L  +D Y+          L     + ++ KPVIA V GYA G
Sbjct: 85  G-GDKAFAAGADIKEMQNLSFQDCYSS-------KFLKHWDHLTQVKKPVIAAVNGYAFG 136
Query: 179 GGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTA 238
           GG  L M+CD+  A + A F Q    +G+     G+  ++R VG   A EM       +A
Sbjct: 137 GGCELAMMCDIIYAGEKAQFAQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISA 196
Query: 239 EEAEKMGLVNTVVPVSLFV 257
           ++A++ GLV+ + PV   V
Sbjct: 197 QDAKQAGLVSKICPVETLV 215

>pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 282

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 93/183 (50%), Gaps = 15/183 (8%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           V + IA IT+NRP+  NA  P  + EL  A+  A +D+ V VIIL   G   F +G D  
Sbjct: 29  VADSIATITLNRPEAANAQNPELLDELDAAWTRAAEDNEVKVIILRANGKH-FSAGHD-- 85
Query: 137 LRTRDGYADYENFGRLNV--------LDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCD 188
              R G    E      +        LD  ++ R +PKP IA V G  + GG +L   CD
Sbjct: 86  --LRGGGEVPEKISLEFIIQHEARRYLDYTLRWRNVPKPSIAAVQGRCISGGLLLCWPCD 143
Query: 189 LTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVN 248
           L +A+D+A+F      +G     Y        +GP+KA+E+ F  R  TAEEAE+ G+VN
Sbjct: 144 LILASDDALFSDPVALMGIGGVEYHGHTWE--LGPRKAKEILFTGRALTAEEAERTGMVN 201
Query: 249 TVV 251
            VV
Sbjct: 202 RVV 204

>pdb|3T3W|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycobacterium Thermoresistibile Length = 279

Iteration: 1
 Score = 97.1 bits (240), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 100/191 (52%), Gaps = 13/191 (6%)
Query: 69  TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEA 128
           T++  +  V + IA IT+NRP+  NA  P  + EL  A+  A +D+ V VI+L   G   
Sbjct: 18  TEMYIDYDVSDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKH- 76
Query: 129 FCSGGDQALRTRDGYAD-------YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
           F +G D  LR      D       Y +  R   L+  ++ R +PKP IA V G  + GG 
Sbjct: 77  FSAGHD--LRGGGPVPDKLTLEFIYAHESR-RYLEYSLRWRNVPKPSIAAVQGRCISGGL 133
Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEA 241
           +L   CDL IAA++A+F  + P V     G      +  +GP+KA+E+ F  R  TAEE 
Sbjct: 134 LLCWPCDLIIAAEDALF--SDPVVLMDIGGVEYHGHTWELGPRKAKEILFTGRAMTAEEV 191
Query: 242 EKMGLVNTVVP 252
            + G+VN VVP
Sbjct: 192 AQTGMVNRVVP 202

>pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 95/193 (49%), Gaps = 5/193 (2%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           + +GIA + +NRP+RRNA  P   +E+I        D + GV++LTG G EA+ +G D  
Sbjct: 15  IEDGIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLK 73
Query: 137 LRTRDGYADYENFG---RLNVLDLQVQIRRL-PKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
              R+  A  E      R      Q ++ R+  KP IAMV G+  GGG    + CDL I 
Sbjct: 74  EYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAIC 133
Query: 193 ADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           AD A FG +    G       S  M+  VG +++       + +  ++A +MGLVN  VP
Sbjct: 134 ADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVP 193
Query: 253 VSLFVAYLMSLTK 265
           ++      + L +
Sbjct: 194 LAQLREVTIELAR 206

>pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258

Iteration: 1
 Score = 93.6 bits (231), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/200 (34%), Positives = 101/200 (50%), Gaps = 8/200 (4%)
Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
           +EF  I   +    GI  I + RPD  NA     V E++ A      +  V VI+LTG+G
Sbjct: 2   SEFVSIAARQEGAVGI--IELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRG 59
Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
             AF +G D     +D     E   +    D   ++  +  P+IA V G A+GGG  L +
Sbjct: 60  -RAFAAGADIQEMAKDDPIRLEWLNQFADWD---RLSIVKTPMIAAVNGLALGGGFELAL 115
Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE-MWFLARFYTAEEAEKM 244
            CDL +A+  A FG     +G      G+  +++L+GPK+A E +W  AR  +A+EAE++
Sbjct: 116 SCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARM-SAKEAEQL 174
Query: 245 GLVNTVVPVSLFVAYLMSLT 264
           G+VN VV   L +   M L 
Sbjct: 175 GIVNRVVSPELLMEETMRLA 194

>pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 95/193 (49%), Gaps = 5/193 (2%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           + +GIA + +NRP+RRNA  P   +E+I        D + GV++LTG G EA+ +G D  
Sbjct: 15  IEDGIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLK 73
Query: 137 LRTRDGYADYENFG---RLNVLDLQVQIRRL-PKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
              R+  A  E      R      Q ++ R+  KP IAMV G+  GGG    + CDL I 
Sbjct: 74  EYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAIC 133
Query: 193 ADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           AD A FG +    G       S  M+  VG +++       + +  ++A +MGLVN  VP
Sbjct: 134 ADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVP 193
Query: 253 VSLFVAYLMSLTK 265
           ++      + L +
Sbjct: 194 LAQLREVTIELAR 206

>pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 95/193 (49%), Gaps = 5/193 (2%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           + +GIA + +NRP++RNA  P   +E+I        D + GV++LTG G EA+ +G D  
Sbjct: 15  IEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLK 73
Query: 137 LRTRDGYADYENFG---RLNVLDLQVQIRRL-PKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
              R+  A  E      R      Q ++ R+  KP IAMV G+  GGG    + CDL I 
Sbjct: 74  EYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAIC 133
Query: 193 ADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           AD A FG +    G       S  M+  VG +++       + +  ++A +MGLVN  VP
Sbjct: 134 ADEATFGLSEINYGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVP 193
Query: 253 VSLFVAYLMSLTK 265
           ++      + L +
Sbjct: 194 LAQLREVTIELAR 206

>pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 95/193 (49%), Gaps = 5/193 (2%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           + +GIA + +NRP++RNA  P   +E+I        D + GV++LTG G EA+ +G D  
Sbjct: 15  IEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLK 73
Query: 137 LRTRDGYADYENFG---RLNVLDLQVQIRRL-PKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
              R+  A  E      R      Q ++ R+  KP IAMV G+  GGG    + CDL I 
Sbjct: 74  EYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAIC 133
Query: 193 ADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           AD A FG +    G       S  M+  VG +++       + +  ++A +MGLVN  VP
Sbjct: 134 ADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVP 193
Query: 253 VSLFVAYLMSLTK 265
           ++      + L +
Sbjct: 194 LAQLREVTIELAR 206

>pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 95/193 (49%), Gaps = 5/193 (2%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           + +GIA + +NRP++RNA  P   +E+I        D + GV++LTG G EA+ +G D  
Sbjct: 15  IEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLK 73
Query: 137 LRTRDGYADYENFG---RLNVLDLQVQIRRL-PKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
              R+  A  E      R      Q ++ R+  KP IAMV G+  GGG    + CDL I 
Sbjct: 74  EYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAIC 133
Query: 193 ADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           AD A FG +    G       S  M+  VG +++       + +  ++A +MGLVN  VP
Sbjct: 134 ADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVP 193
Query: 253 VSLFVAYLMSLTK 265
           ++      + L +
Sbjct: 194 LAQLREVTIELAR 206

>pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 95/193 (49%), Gaps = 5/193 (2%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           + +GIA + +NRP++RNA  P   +E+I        D + GV++LTG G EA+ +G D  
Sbjct: 15  IEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLK 73
Query: 137 LRTRDGYADYENFG---RLNVLDLQVQIRRL-PKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
              R+  A  E      R      Q ++ R+  KP IAMV G+  GGG    + CDL I 
Sbjct: 74  EYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAIC 133
Query: 193 ADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           AD A FG +    G       S  M+  VG +++       + +  ++A +MGLVN  VP
Sbjct: 134 ADEATFGLSEINYGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVP 193
Query: 253 VSLFVAYLMSLTK 265
           ++      + L +
Sbjct: 194 LAQLREVTIELAR 206

>pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 95/193 (49%), Gaps = 5/193 (2%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           + +GIA + +NRP++RNA  P   +E+I        D + GV++LTG G EA+ +G D  
Sbjct: 15  IEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLK 73
Query: 137 LRTRDGYADYENFG---RLNVLDLQVQIRRL-PKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
              R+  A  E      R      Q ++ R+  KP IAMV G+  GGG    + CDL I 
Sbjct: 74  EYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAIC 133
Query: 193 ADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           AD A FG +    G       S  M+  VG +++       + +  ++A +MGLVN  VP
Sbjct: 134 ADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVP 193
Query: 253 VSLFVAYLMSLTK 265
           ++      + L +
Sbjct: 194 LAQLREVTIELAR 206

>pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 95/193 (49%), Gaps = 5/193 (2%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           + +GIA + +NRP++RNA  P   +E+I        D + GV++LTG G EA+ +G D  
Sbjct: 15  IEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLK 73
Query: 137 LRTRDGYADYENFG---RLNVLDLQVQIRRL-PKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
              R+  A  E      R      Q ++ R+  KP IAMV G+  GGG    + CDL I 
Sbjct: 74  EYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAIC 133
Query: 193 ADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           AD A FG +    G       S  M+  VG +++       + +  ++A +MGLVN  VP
Sbjct: 134 ADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVP 193
Query: 253 VSLFVAYLMSLTK 265
           ++      + L +
Sbjct: 194 LAQLREVTIELAR 206

>pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 95/193 (49%), Gaps = 5/193 (2%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           + +GIA + +NRP++RNA  P   +E+I        D + GV++LTG G EA+ +G D  
Sbjct: 15  IEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLK 73
Query: 137 LRTRDGYADYENFG---RLNVLDLQVQIRRL-PKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
              R+  A  E      R      Q ++ R+  KP IAMV G+  GGG    + CDL I 
Sbjct: 74  EYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAIC 133
Query: 193 ADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           AD A FG +    G       S  M+  VG +++       + +  ++A +MGLVN  VP
Sbjct: 134 ADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVP 193
Query: 253 VSLFVAYLMSLTK 265
           ++      + L +
Sbjct: 194 LAQLREVTIELAR 206

>pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269

Iteration: 1
 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 96/184 (52%), Gaps = 5/184 (2%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-Q 135
           V +G+A+ITI  P  RNA     ++E+  A N A +D SVG +++TG   +AFC+G   +
Sbjct: 9   VEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITG-AEDAFCAGFYLR 67
Query: 136 ALRTRDGYADYENFGRLNVLDLQVQIR---RLPKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
            +    G A   +  R+  L  Q  I    R+ +PV+A + G A GGG  + +  D+ I 
Sbjct: 68  EIPLDKGVAGVRDHFRIAALWWQQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAIC 127
Query: 193 ADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           AD+A F      +G  +    S  ++R+VG ++A E+    R    EEA+  GLV+ V P
Sbjct: 128 ADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYP 187
Query: 253 VSLF 256
              F
Sbjct: 188 KDEF 191

>pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 92/188 (48%), Gaps = 5/188 (2%)
Query: 65  GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124
           G+  +D++  +  G  +  + INRP  RNA    T   L  AF +   D S  V +L G 
Sbjct: 3   GSMVSDLVQVERNGP-VTTVIINRPQARNAVNGPTAAALYSAFAEFDRDESASVAVLCGN 61
Query: 125 GTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
           G   FC+G D  L+   G A+     R     +      L KPVIA V+GYAV GG  L 
Sbjct: 62  GGT-FCAGAD--LKAF-GTAEANAVHRTGPGPMGPSRMMLSKPVIAAVSGYAVAGGLELA 117
Query: 185 MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKM 244
           + CDL +A  +A+FG    + G      G+  + RL+G  +A +M    R   A+EA  +
Sbjct: 118 LWCDLRVAEQDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDMILTGRAVQADEALAI 177
Query: 245 GLVNTVVP 252
           GL N VVP
Sbjct: 178 GLANRVVP 185

>pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 97/184 (52%), Gaps = 5/184 (2%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-Q 135
           V +G+A+ITI  P  RNA     ++E+  A N A +D SVG +++TG   +AFC+G   +
Sbjct: 9   VEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITG-AEDAFCAGFYLR 67
Query: 136 ALRTRDGYADYENFGRLNVL---DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
            +    G A   +  R+  L    +  +I R+ +PV+A + G A GGG  + +  D+ I 
Sbjct: 68  EIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAIC 127
Query: 193 ADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           AD+A F      +G  +    S  ++R+VG ++A E+    R    EEA+  GLV+ V P
Sbjct: 128 ADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYP 187
Query: 253 VSLF 256
              F
Sbjct: 188 KDEF 191

>pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 97/184 (52%), Gaps = 5/184 (2%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-Q 135
           V +G+A+ITI  P  RNA     ++E+  A N A +D SVG +++TG   +AFC+G   +
Sbjct: 9   VEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITG-AEDAFCAGFYLR 67
Query: 136 ALRTRDGYADYENFGRLNVL---DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
            +    G A   +  R+  L    +  +I R+ +PV+A + G A GGG  + +  D+ I 
Sbjct: 68  EIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAIC 127
Query: 193 ADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           AD+A F      +G  +    S  ++R+VG ++A E+    R    EEA+  GLV+ V P
Sbjct: 128 ADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTDRTLYPEEAKDWGLVSRVYP 187
Query: 253 VSLF 256
              F
Sbjct: 188 KDEF 191

>pdb|3HE2|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 264

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 87/173 (50%), Gaps = 10/173 (5%)
Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
           E +  I + RP+RRNA     V+EL +A   A  D S   I+LTG+GT AFC+G D    
Sbjct: 29  EAVLTIELQRPERRNALNSQLVEELTQAIRKA-GDGSARAIVLTGQGT-AFCAGAD---L 83
Query: 139 TRDGYA-DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAI 197
           + D +A DY +     +++L   +   P PV+  + G A+G G  L M CDL + A +A 
Sbjct: 84  SGDAFAADYPD----RLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAF 139
Query: 198 FGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250
           F     K G     +    +S LVG  +AR M   A   TAE A   G+ N +
Sbjct: 140 FQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRI 192

>pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From Mycobacterium Marinum Length = 277

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 99/190 (52%), Gaps = 11/190 (5%)
Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
           S  EF  ++ ++    G+A + ++RP   NA      +E++ A ++      +G ++L G
Sbjct: 21  SMNEFVSVVADQ----GLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFG 75
Query: 124 KGTEAFCSGGDQA-LRTRDG-YADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
            G E F +G D   LRT +   AD     RL  +D    +  +PKP +A V GYA+G G 
Sbjct: 76  -GHEIFSAGDDMPELRTLNAPEADTAARVRLEAID---AVAAIPKPTVAAVTGYALGAGL 131
Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEA 241
            L +  D  ++ DN  FG T    G    G G   ++R+VG  +A+E+ F  RF+ AEEA
Sbjct: 132 TLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEA 191
Query: 242 EKMGLVNTVV 251
             +GL++ +V
Sbjct: 192 LALGLIDDMV 201

>pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 4/180 (2%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143
           +T+NRP  RNA     + +L+     A  D+S+ V ++TG     F +G D         
Sbjct: 18  LTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNA-RFFAAGADLNEMAEKDL 76
Query: 144 ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGP 203
           A   N  R     L  +++   KP+IA V GYA+G G  L ++CD+ +A +NA FG    
Sbjct: 77  AATLNDTRPQ---LWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEI 133
Query: 204 KVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSL 263
            +G      G+  + R VG   A +M       TA++A++ GLV+ V P  L + Y + L
Sbjct: 134 TLGIMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQAQQAGLVSDVFPSDLTLEYALQL 193

>pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278

Iteration: 1
 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 89/171 (52%), Gaps = 3/171 (1%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143
           +T+NRP RRNA     ++ ++ A++   +D  +   ILTG G   FC+G D    T+   
Sbjct: 33  VTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGG-YFCAGMDLKAATKKPP 91
Query: 144 ADYENFGRLNV--LDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQT 201
            D    G  +   +D  ++ RRL KP+IA V G A+ GG  +    D+ +AA++A FG +
Sbjct: 92  GDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGIS 151
Query: 202 GPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
             K   +  G  +  + R +    A ++    R  TA EA++MGLV  VVP
Sbjct: 152 EAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMGLVGHVVP 202

>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254

Iteration: 1
 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 9/194 (4%)
Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
           +G+  +T+NRP++ NA     +  L  A  +  +D  V  ++LTG G  AF +G D    
Sbjct: 8   DGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAG-RAFSAGQDLT-E 65
Query: 139 TRDGYADYE-NFGRLN-VLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
             D   DYE +  R N V++    +  L KP++  V G A G G  L +  DL +AA  A
Sbjct: 66  FGDRKPDYEAHLRRYNRVVE---ALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGA 122
Query: 197 IFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSL 255
            F     ++G   D+G  S ++ RLVG  KA+E+  L+   +AEEA  +GLV+ VVP   
Sbjct: 123 SFTTAFVRIGLVPDSGL-SFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRVVPAEK 181
Query: 256 FVAYLMSLTKCQAH 269
            +   +SL K  A 
Sbjct: 182 LMEEALSLAKELAQ 195

>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 84/186 (45%), Gaps = 13/186 (6%)
Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
            TD I      E +  +T+NRP  RNA           A  DA  D  V V+I+TG    
Sbjct: 5   MTDEILLSNTEERVRTLTLNRPQARNALSAALRDRFFGALADAETDDDVDVVIITG-ADP 63
Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVL-DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
            FC+G            D +  G  + L D+  +   L KPVI  + G AV GG  L + 
Sbjct: 64  VFCAG-----------LDLKELGGSSALPDISPRWPALTKPVIGAINGAAVTGGLELALY 112
Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
           CD+ IA++NA F  T  +VG       S  + + VG   AR M     + +A +A + GL
Sbjct: 113 CDILIASENARFADTHARVGLLPTWGLSVRLPQKVGIGLARRMSLTGDYLSAADALRAGL 172
Query: 247 VNTVVP 252
           V  VVP
Sbjct: 173 VTEVVP 178

>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270

Iteration: 1
 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 84/186 (45%), Gaps = 13/186 (6%)
Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
            TD I      E +  +T+NRP  RNA           A  DA  D  V V+I+TG    
Sbjct: 22  MTDEILLSNTEERVRTLTLNRPQARNALSAALRDRFFGALADAETDDDVDVVIITG-ADP 80
Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVL-DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
            FC+G            D +  G  + L D+  +   L KPVI  + G AV GG  L + 
Sbjct: 81  VFCAG-----------LDLKELGGSSALPDISPRWPALTKPVIGAINGAAVTGGLELALY 129
Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
           CD+ IA++NA F  T  +VG       S  + + VG   AR M     + +A +A + GL
Sbjct: 130 CDILIASENARFADTHARVGLLPTWGLSVRLPQKVGIGLARRMSLTGDYLSAADALRAGL 189
Query: 247 VNTVVP 252
           V  VVP
Sbjct: 190 VTEVVP 195

>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 32/190 (16%)
Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQ----- 135
           IA +T+NRP+R NA     +    +   D   D+ V  +++TG G + FCSG DQ     
Sbjct: 34  IALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAG-KGFCSGADQKSAGP 92
Query: 136 ------------ALRTRDGYADYENFGRLNVLD-LQVQIRRLPKPVIAMVAGYAVGGGHV 182
                       ALR+            + +LD + + +RR+ +PVIA + G A+GGG  
Sbjct: 93  IPHIGGLTQPTIALRS------------MELLDEVILTLRRMHQPVIAAINGAAIGGGLC 140
Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYG-SSIMSRLVGPKKAREMWFLARFYTAEEA 241
           L + CD+ +A+ +A F   G   G   +  G S ++ R +G  +A ++    R   A+EA
Sbjct: 141 LALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEA 200
Query: 242 EKMGLVNTVV 251
           E++GLV+  V
Sbjct: 201 ERIGLVSRKV 210

>pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 103/207 (49%), Gaps = 17/207 (8%)
Query: 68  FTDIIYEKAVGE---GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124
            T++  + AV E    +A ITI+RPD RNA        +  A  +A+ D  V  +++TG 
Sbjct: 9   LTEVTRQAAVVERRGNVALITIDRPDARNAVNGAVSTAVGDALEEAQRDPEVWAVVITGA 68
Query: 125 GTEAFCSGGDQALRTRDG---YADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
           G ++FC+G D    +R     +A++  +G    +   +      KP IA V G A+GGG 
Sbjct: 69  GDKSFCAGADLKAISRGENLYHAEHPEWGFAGYVHHFID-----KPTIAAVNGTALGGGS 123
Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGS--SIMSRLVGPKK-AREMWFLARFYTA 238
            L +  DL IA ++A FG    K G   AG G    I+ +L  P+K A E+       TA
Sbjct: 124 ELALASDLVIACESASFGLPEVKRG-LIAGAGGVFRIVEQL--PRKVALELVLTGEPMTA 180
Query: 239 EEAEKMGLVNTVVPVSLFVAYLMSLTK 265
            +A + GL+N VVP    V   ++L +
Sbjct: 181 SDALRWGLINEVVPDGTVVEAALALAE 207

>pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255

Iteration: 1
 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 90/185 (48%), Gaps = 8/185 (4%)
Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTR 140
           + +I ++RP++ NA     ++EL     DA  D SV  ++LTG G  AFCSGGD      
Sbjct: 16  VLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAG-RAFCSGGDLTGGDT 74
Query: 141 DGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200
            G AD  N        +   I  LPKPVIA V G AVG G  L + CDL +AA  + F  
Sbjct: 75  AGAADAAN-------RVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQL 127
Query: 201 TGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYL 260
              +VG    G  S+++  L+G  +   M   A   +A  A + G+++ +     + + L
Sbjct: 128 AFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSADEYESVL 187
Query: 261 MSLTK 265
             + +
Sbjct: 188 TDVLR 192

>pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287

Iteration: 1
 Score = 80.9 bits (198), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 83/174 (47%), Gaps = 2/174 (1%)
Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
           +GI  I ++ P +RN      +K L        D + + VII++ +G   F SG D    
Sbjct: 41  DGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGP-VFSSGHDLKEL 99
Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
           T +   DY          + + IR  P PVIAMV G A   G  L   CD+ +A+D + F
Sbjct: 100 TEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSF 159
Query: 199 GQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
              G  VG F +  G + ++R V  K A EM F     +A+EA   GL++ VVP
Sbjct: 160 ATPGVNVGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVP 212

>pdb|2F6Q|A Chain A, The Crystal Structure Of Human Peroxisomal Delta3, Delta2 Enoyl Coa Isomerase (Peci) Length = 280

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 81/181 (44%), Gaps = 5/181 (2%)
Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
           +GI KI  NRP ++NA       E+ RA   A  D S+ + +LTG G + + SG D    
Sbjct: 34  DGITKIXFNRPKKKNAINTEXYHEIXRALKAASKDDSI-ITVLTGNG-DYYSSGNDLTNF 91
Query: 139 TRDGYADYENFGRLNVLDLQVQIR---RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN 195
           T       E   + N + L+  +      PKP+IA+V G AVG    L  + D   A+D 
Sbjct: 92  TDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDR 151
Query: 196 AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSL 255
           A F      +G    G  S    ++  P KA E     +  TA EA   GLV  V P S 
Sbjct: 152 ATFHTPFSHLGQSPEGCSSYTFPKIXSPAKATEXLIFGKKLTAGEACAQGLVTEVFPDST 211
Query: 256 F 256
           F
Sbjct: 212 F 212

>pdb|3TLF|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 274

Iteration: 1
 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 91/193 (47%), Gaps = 14/193 (7%)
Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           F  I YE  V    A IT+NRPD  NA  PH + EL  A+++A +D  V ++++TG G  
Sbjct: 10  FDTIKYE--VDGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTG-R 66
Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVLDL-------QVQIRRLPKPVIAMVAGYAVGGG 180
           AFCSG D      DG   YE    L+  D            R + KPV+  V G   G G
Sbjct: 67  AFCSGADVKEIPEDGKVIYER-PYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAG 125
Query: 181 HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF--YTA 238
                  D+ IA++ A F      +G   AG     +SR++    A  M  + +    +A
Sbjct: 126 MDWVTTTDIVIASEQATFFDPHVSIG-LVAGRELVRVSRVLPRSIALRMALMGKHERMSA 184
Query: 239 EEAEKMGLVNTVV 251
           + A ++GL++ +V
Sbjct: 185 QRAYELGLISEIV 197

>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 85/175 (48%), Gaps = 13/175 (7%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD--QALRTRD 141
           +T+NRP RRNA   + V +   A+++   D  +   ILTG G+ A+C GGD       RD
Sbjct: 22  LTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGS-AYCVGGDLSDGWMVRD 80
Query: 142 GYA---DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
           G A   D    G+  +L        L KP+IA V G  +GGG  +    D+ ++ ++A F
Sbjct: 81  GSAPPLDPATIGKGLLLS-----HTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATF 135
Query: 199 GQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           G    + G    G GS + + R +   KA EM       TA EA   GLV  VVP
Sbjct: 136 GLPEVQRG-LVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVP 189

>pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 13/172 (7%)
Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTR 140
           +  +T+NRP  RNA          RA +DA++D  V V+I+TG     FC+G        
Sbjct: 19  VRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTG-ADPVFCAG-------- 69
Query: 141 DGYADYENFGRLNVL-DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG 199
               D +  G    L D+  +   + KPVI  + G AV GG  L + CD+ IA++NA F 
Sbjct: 70  ---LDLKELGDTTELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFA 126
Query: 200 QTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
            T  +VG       S  + + VG   AR M     + +A++A + GLV  VV
Sbjct: 127 DTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTEVV 178

>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 8/171 (4%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-QALRTRDG 142
           ITINRP+ RNA        +  A  +A+ D  V  ++LTG G ++FC+G D +A+  R+ 
Sbjct: 22  ITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARREN 81
Query: 143 --YADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200
             + D+  +G    +   +      KP IA V G A+GGG  L +  DL +A + A FG 
Sbjct: 82  LYHPDHPEWGFAGYVRHFID-----KPTIAAVNGTALGGGTELALASDLVVADERAQFGL 136
Query: 201 TGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
              K G   A  G   ++  +  K A  +       +A  A   GL+N VV
Sbjct: 137 PEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVV 187

>pdb|3FDU|A Chain A, Crystal Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Acinetobacter Baumannii Length = 266

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 6/175 (3%)
Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT 139
           G+  + INRP+ +NA        + +A ++A  +  V V++L G     F +G D  ++ 
Sbjct: 14  GVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRG-AEHDFTAGND--MKD 70
Query: 140 RDGYADYENFGRLNVLDLQVQIR---RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
             G+    N G    +   V ++   RL KP+I  V G A+G G  + +  DL  A + A
Sbjct: 71  FMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTA 130
Query: 197 IFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
           +F      +G    G  S ++ +  G  KA E+ F A+ + AE A + GLVN +V
Sbjct: 131 LFQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNEIV 185

>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 8/171 (4%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-QALRTRDG 142
           ITINRP+ RNA        +  A  +A+ D  V  ++LTG G ++FC+G D +A+  R+ 
Sbjct: 22  ITINRPEARNAVNAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARREN 81
Query: 143 --YADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200
             + D+  +G    +   +      KP IA V G A+GGG  L +  DL +A + A FG 
Sbjct: 82  LYHPDHPEWGFAGYVRHFID-----KPTIAAVNGTALGGGTELALASDLVVADERAQFGL 136
Query: 201 TGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
              K G   A  G   ++  +  K A  +       +A  A   GL+N VV
Sbjct: 137 PEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVV 187

>pdb|3I47|A Chain A, Crystal Structure Of Putative Enoyl Coa HydrataseISOMERASE (Crotonase) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 Length = 268

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 96/187 (51%), Gaps = 6/187 (3%)
Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
            +D++YE  + + +  +T+NR  + NAF    + E+    + A +D++V VI+L   G  
Sbjct: 3   LSDLLYE--IQDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKH 60
Query: 128 AFCSGGDQA-LRTRDGYADYENFGRLNVL-DLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
            F +G D   +++   + + EN     VL +L   I + PKP IAMV G A GGG  L  
Sbjct: 61  -FSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAA 119
Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMG 245
            CD+ IA+ +A F  +  K+G   A     ++ R +G + A+ ++  A  + A  A  + 
Sbjct: 120 ACDIAIASTSARFCFSEVKLGLIPAVISPYVV-RAIGERAAKMLFMSAEVFDATRAYSLN 178
Query: 246 LVNTVVP 252
           LV   VP
Sbjct: 179 LVQHCVP 185

>pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From Mycobacterium Marinum Length = 298

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 93/191 (48%), Gaps = 15/191 (7%)
Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           ++YE   G G+A IT NR DR NA+ P        A + A  D  + VI+LTG+G   FC
Sbjct: 31  VLYEATPG-GVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRG-RGFC 88
Query: 131 SGGDQALRTRDGYADYENF----GRLNVLDLQVQ-----IRRLPKPVIAMVAGYAVGGGH 181
           +G    L + D  A Y+         N+ DL  +     +  L KPVIA + G  VG G 
Sbjct: 89  AGA--YLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGL 146
Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYG-SSIMSRLVGPKKAREMWFLARFYTAEE 240
              ++CD+  AA  A F     + G   A +G S I+ RL     A ++    R + AEE
Sbjct: 147 TQALMCDVRFAAAGAKFAAVFARRG-LIAEFGISWILPRLTSWAVALDLLLSGRTFLAEE 205
Query: 241 AEKMGLVNTVV 251
           A ++GLV  VV
Sbjct: 206 AAQLGLVKEVV 216

>pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 78/169 (46%), Gaps = 10/169 (5%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-QALRTRDG 142
           ITINRPD RNA      + L  A +     + + V I+TG G   FC+G D +A  + + 
Sbjct: 20  ITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGN-FCAGMDLKAFVSGEA 78
Query: 143 YADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTG 202
                  G  NV           KP+IA V G+A+ GG  L + CDL +A  +A FG   
Sbjct: 79  VLSERGLGFTNVPPR--------KPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPE 130
Query: 203 PKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
            K G      G   +   +  + A E+      +TAE+A K G +N +V
Sbjct: 131 VKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINRLV 179

>pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 9/190 (4%)
Query: 65  GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124
           G+  T++  E  + +G+A +T++ P  RN+F     ++L  A+    DD +V VI+LTG 
Sbjct: 3   GSMVTELHEE--IRDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTG- 59
Query: 125 GTEAFCSGGDQALRTRDGYADYEN--FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
              AFCSG  Q     + +A   N  F    V     ++R    PVIA V G+A+G G  
Sbjct: 60  APPAFCSGA-QISAAAETFAAPRNPDFSASPVQPAAFELR---TPVIAAVNGHAIGIGMT 115
Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
           L +  D+ I A+   +     + G          + RLVG   A E+      ++A+ A 
Sbjct: 116 LALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAV 175
Query: 243 KMGLVNTVVP 252
           + GL N  +P
Sbjct: 176 ETGLANRCLP 185

>pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 87/196 (44%), Gaps = 38/196 (19%)
Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSG-------- 132
           +  + +NRP++RNA      +E++  FN    D+    ++++G G + F +G        
Sbjct: 41  VLHVQLNRPNKRNAMNKVFWREMVECFNKISRDADCRAVVISGAG-KMFTAGIDLMDMAS 99
Query: 133 ------GDQALRT----RDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
                 GD   R     RD    Y+     NV      I R PKPVIA V G  +GGG  
Sbjct: 100 DILQPKGDDVARISWYLRDIITRYQE--TFNV------IERCPKPVIAAVHGGCIGGGVD 151
Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-----MSRLVGPKK-AREMWFLARFY 236
           L   CD+   A +A F     +V   D G  + +     + +++G +    E+ F AR  
Sbjct: 152 LVTACDIRYCAQDAFF-----QVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAFTARKM 206
Query: 237 TAEEAEKMGLVNTVVP 252
            A+EA   GLV+ V P
Sbjct: 207 MADEALGSGLVSRVFP 222

>pdb|2FBM|A Chain A, Acetyltransferase Domain Of Cdy1 Length = 291

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 14/203 (6%)
Query: 66  TEFTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124
           + + DI+ +K   +G  +I ++ R   +NA     +KE++ A N A  D S  +++ +  
Sbjct: 20  STYRDIVVKKE--DGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAA 76
Query: 125 GTEAFCSGGD-----QALRTRDGYADYENFGRL-NVLDLQVQIRRLPKPVIAMVAGYAVG 178
           G+  FC G D     + LR     A  E    + N ++  +Q +   KP++  V G A+G
Sbjct: 77  GS-VFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFK---KPIVVSVNGPAIG 132
Query: 179 GGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTA 238
            G  +  +CDL  A + A F       G    G  S    +++G   A EM    R  TA
Sbjct: 133 LGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTA 192
Query: 239 EEAEKMGLVNTVVPVSLFVAYLM 261
            EA   GLV+ V     F   +M
Sbjct: 193 REACAKGLVSQVFLTGTFTQEVM 215

>pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Halodurans Length = 263

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 5/171 (2%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGG--DQALRTRD 141
           IT++ P+++N         L+ A     +++S+  IIL  K    F SG   +  L    
Sbjct: 17  ITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICAS 76
Query: 142 GYADYENFGRLNVLDLQV-QIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200
             +D      L+VL+  V +I   PK  +A++ GYA GGG  + + CD  IA   A F +
Sbjct: 77  DQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLE 136
Query: 201 TGPKVG-SFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250
              K+G S D G  S  + R++G ++   +    + +T+EEA ++GL+  +
Sbjct: 137 NFHKMGISPDLG-ASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEI 186

>pdb|3R9Q|A Chain A, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 262

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 87/174 (50%), Gaps = 10/174 (5%)
Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG-KGTEAFCSGGD-QALR 138
           +  + +NRP  RNA    T   L+ AF +   D    V +L G  GT  FC+G D +A+ 
Sbjct: 21  VTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGT--FCAGADLKAMG 78
Query: 139 TRDGYADYENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAI 197
           T  G   + +  G +    L     RL KPVIA ++G+AV GG  L + CDL +  ++A+
Sbjct: 79  TDRGNELHPHGPGPMGPSRL-----RLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAV 133
Query: 198 FGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
            G    + G      G+  + RL+G  +A ++    R   A EA  +GLVN VV
Sbjct: 134 LGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVV 187

>pdb|2FW2|A Chain A, Catalytic Domain Of Cdy Length = 260

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 90/201 (44%), Gaps = 14/201 (6%)
Query: 68  FTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
           + DI+ +K   +G  +I ++ R   +NA     +KE++ A N A  D S  +++ +  G+
Sbjct: 3   YRDIVVKKE--DGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDS-KLVLFSAAGS 59
Query: 127 EAFCSGGD-----QALRTRDGYADYENFGRL-NVLDLQVQIRRLPKPVIAMVAGYAVGGG 180
             FC G D     + LR     A  E    + N ++  +Q +   KP++  V G A+G G
Sbjct: 60  -VFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFK---KPIVVSVNGPAIGLG 115
Query: 181 HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEE 240
             +  +CDL  A + A F       G    G  S    +++G   A EM    R  TA E
Sbjct: 116 ASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTARE 175
Query: 241 AEKMGLVNTVVPVSLFVAYLM 261
           A   GLV+ V     F   +M
Sbjct: 176 ACAKGLVSQVFLTGTFTQEVM 196

>pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 3/168 (1%)
Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA-LRT 139
           +  +T+NRP+  NAF         +A  DA DD  V V++LTG G   F +G D A ++ 
Sbjct: 16  VRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSG-RGFSAGTDLAEMQA 74
Query: 140 RDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG 199
           R    ++   G+     L   +   PKP+I  V G  VG G  +    DL   +  A   
Sbjct: 75  RITDPNFSE-GKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLK 133
Query: 200 QTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLV 247
                +G       S ++ +LVG + A  +   + +  AEEA +MGLV
Sbjct: 134 CPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLV 181

>pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275

Iteration: 1
 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 84/193 (43%), Gaps = 38/193 (19%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSG----------- 132
           + +NRP++RNA      +EL+  F     DS    ++++G G + F SG           
Sbjct: 17  VQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAG-KMFTSGIDLMDMASDIL 75
Query: 133 ---GDQALRT----RDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
              GD   R     RD  + Y+    +        I + PKPVIA + G  +GGG  L  
Sbjct: 76  QPPGDDVARIAWYLRDLISRYQKTFTV--------IEKCPKPVIAAIHGGCIGGGVDLIS 127
Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-----MSRLVGPKK-AREMWFLARFYTAE 239
            CD+     +A F     +V   D G  + +     + +++G +    E+ F AR   A+
Sbjct: 128 ACDIRYCTQDAFF-----QVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMAD 182
Query: 240 EAEKMGLVNTVVP 252
           EA   GLV+ V P
Sbjct: 183 EALDSGLVSRVFP 195

>pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 4/178 (2%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           V +G+  +T+NRP+R N+F      +L         D ++  ++LTG G   FC+G D  
Sbjct: 21  VEKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAG-RGFCAGQDLN 79
Query: 137 LRTRDGYADYENFGRLNVLDLQVQIRRL---PKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
            R  D      + G          +RRL   PKPVI  V G A G G  L +  D+ IAA
Sbjct: 80  DRNVDPTGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAA 139
Query: 194 DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
            +A F     K+G      G+ ++ R+ G  +A  +  L    +AE+A + G++  VV
Sbjct: 140 RSAKFVMAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQAHEWGMIWQVV 197

>pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From Mycobacterium Marinum In Complex With An Unknown Ligand Length = 272

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 12/190 (6%)
Query: 67  EFTDIIYEKAVGE-GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
           +F  + +E   GE G+  + ++ P   N+  P   ++L   +     D  V V+++ G+G
Sbjct: 11  DFPSLRFEP--GEHGVLNLVLDSPGL-NSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEG 67
Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNVL----DLQVQIRRLPKPVIAMVAGYAVGGGH 181
            +AF SGG   L   +   DYE  GR+ ++    DL + +  L KPV++ + G AVG G 
Sbjct: 68  -KAFSSGGSFEL-IDETIGDYE--GRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGL 123
Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEA 241
           V+ ++ D+++A+  A       K+G     + +     LVG  KA+         + EEA
Sbjct: 124 VVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEA 183
Query: 242 EKMGLVNTVV 251
           E++GLV+T V
Sbjct: 184 ERIGLVSTCV 193

>pdb|3SWX|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 5/188 (2%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRD-- 141
           I +NRP +RNAF    ++EL  A  +   D+ +   +L G+G   F +G D A    +  
Sbjct: 22  IGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGP-LFTAGLDLASVAAEIQ 80
Query: 142 GYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQT 201
           G A     G +N    QV  R+L KP++  V G  +  G  L +  D+ IA + A F Q 
Sbjct: 81  GGASLTPEGGIN--PWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQL 138
Query: 202 GPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLM 261
               G +  G  +    R  G   A      A  + A EA ++G+V  +VPV   V   +
Sbjct: 139 EVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAI 198
Query: 262 SLTKCQAH 269
           ++ +  A 
Sbjct: 199 AIAQTIAR 206

>pdb|1HZD|A Chain A, Crystal Structure Of Human Auh Protein, An Rna-Binding Homologue Of Enoyl-Coa Hydratase Length = 272

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 1/172 (0%)
Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT 139
           GI  + INR   +N+   + +K L +A +  + D  V  II+  +    FC+G D   R 
Sbjct: 21  GIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERA 80
Query: 140 RDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG 199
           +   ++   F    +  +   I  LP P IA + G A+GGG  L + CD+ +AA +A  G
Sbjct: 81  KMSSSEVGPFVS-KIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMG 139
Query: 200 QTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
               K+     G G+  + R +G   A+E+ F AR    +EA+ +GL++ V+
Sbjct: 140 LVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVL 191

>pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/188 (35%), Positives = 96/188 (51%), Gaps = 7/188 (3%)
Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           +  I YE  V   +A +T+NRPD+ NAF      E+ +A   A  D +V  +++TG G  
Sbjct: 2   YETIRYE--VKGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAG-R 58
Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
           AFC+G D +  T +   D+ +  R     +   +  L KPV+A V G A G G  L + C
Sbjct: 59  AFCAGEDLSGVTEE--MDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALAC 116
Query: 188 DLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
           D  + ++ A F      VG   DAG+    + RLVG  KA E+  L    TAEEA  +GL
Sbjct: 117 DFRLLSEKASFAPAFIHVGLVPDAGH-LYYLPRLVGRAKALELAVLGEKVTAEEAAALGL 175
Query: 247 VNTVVPVS 254
              V+P+S
Sbjct: 176 ATKVIPLS 183

>pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 10/187 (5%)
Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
             D     A G  +A++T+N P  RNA     V +L +   DA  D +V V++L   G  
Sbjct: 8   LVDYAGPAATGGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGG- 66
Query: 128 AFCSGGDQALRTRDGYAD------YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
            FC+G D +     G          E    +  L   +   RL  PVIA + G+   GG 
Sbjct: 67  TFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRL--PVIAAIDGHVRAGGF 124
Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEA 241
            L   CD+ +A   + F  T  ++G   A    +++ +L     AR  +     + A  A
Sbjct: 125 GLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLPKLSARAAAR-YYLTGEKFDARRA 183
Query: 242 EKMGLVN 248
           E++GL+ 
Sbjct: 184 EEIGLIT 190

>pdb|3L3S|A Chain A, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE FAMILY Protein From Silicibacter Pomeroyi Length = 263

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 86/201 (42%), Gaps = 12/201 (5%)
Query: 70  DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF 129
           D +  + + EG+  +T+ R       R   +  L  A   A  D  V V+++ G G   F
Sbjct: 6   DGLLGEVLSEGVLTLTLGRAPAHPLSRA-XIAALHDALRRAXGDDHVHVLVIHGPG-RIF 63
Query: 130 CSGGDQALRTRDGYADYENFGRLNVLDL-------QVQIRRLPKPVIAMVAGYAVGGGHV 182
           C+G D  L+    +    + GR  V DL        + +   PKP IA+V G A   G  
Sbjct: 64  CAGHD--LKEIGRHRADPDEGRAFVTDLFEACSALXLDLAHCPKPTIALVEGIATAAGLQ 121
Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
           L   CDL  A+  A F   G + G F      ++ SR++G +   E       Y A+ A 
Sbjct: 122 LXAACDLAYASPAARFCLPGVQNGGFXTTPAVAV-SRVIGRRAVTEXALTGATYDADWAL 180
Query: 243 KMGLVNTVVPVSLFVAYLMSL 263
             GL+N ++P +    ++  L
Sbjct: 181 AAGLINRILPEAALATHVADL 201

>pdb|2PPY|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From Geobacillus Kaustophilus Hta426 Length = 265

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 88/179 (49%), Gaps = 11/179 (6%)
Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-QAL 137
           +GIA+I ++  ++ N++     KE   A +D R D  + V+I+     + F +G D   L
Sbjct: 17  DGIAEIHLH-INKSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVXSDVPKFFSAGADINFL 75
Query: 138 RTRDGYADYENFGRLN-VLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
           R+ D     +     N  LD   +I R P+  IA + G+ VGGG    + CDL    D A
Sbjct: 76  RSADPRFKTQFCLFCNETLD---KIARSPQVYIACLEGHTVGGGLEXALACDLRFXGDEA 132
Query: 197 IFGQTG-PKV--GSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
             G+ G P+V  G      G+  ++RL+G  +A +        T +EA ++GLVN V P
Sbjct: 133 --GKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDXNITGETITPQEALEIGLVNRVFP 189

>pdb|2Q35|A Chain A, Crystal Structure Of The Y82f Variant Of Ech2 Decarboxylase Domain Of Curf From Lyngbya Majuscula Length = 243

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 7/175 (4%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           +G G+ +IT+     RN F P  V+ L   F+    +    V+ILTG G   F SG  + 
Sbjct: 9   LGNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGN-YFSSGASKE 67
Query: 137 LRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
              R      +  G + VLDL   I     P+IA + G++ GGG +L +  D  + +  +
Sbjct: 68  FLIR------KTRGEVEVLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQES 121
Query: 197 IFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
           ++     K G    G  S I+   +G + A+EM +    Y  +E  + G+   VV
Sbjct: 122 VYATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVV 176

>pdb|2PG8|A Chain A, Crystal Structure Of R254k Mutanat Of Dpgc With Bound Substrate Analog Length = 417

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 25/212 (11%)
Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG--------KGTEAFC 130
           +G+A++T+ R DR NA     V ++  A + A  D  V V +L G        +G   F 
Sbjct: 164 DGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFS 223
Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIR---------------RLPKPVIAMVAGY 175
           +G +    ++ G +  +   R  +  +   +R               R+ KP +A V G+
Sbjct: 224 AGINLKYLSQGGISLVDFLMRKELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGF 283
Query: 176 AVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF 235
           A+GGG  L +V D  +A+ +A F     K G    G  +  + R  GP+ +R++    R 
Sbjct: 284 AIGGGAQLLLVFDRVLASSDAYFSLPAAKEGII-PGAANLRLGRFAGPRVSRQVILEGRR 342
Query: 236 YTAEEAEKMGLVNTVV-PVSLFVAYLMSLTKC 266
             A+E E   LV+ VV P  L  A   SLT+ 
Sbjct: 343 IWAKEPEARLLVDEVVEPDELDAAIERSLTRL 374

>pdb|3QXI|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa1 From Mycobacterium Marinum Length = 265

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 75/167 (44%), Gaps = 7/167 (4%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143
           ITINRP  +N+      + L  A +    D+ + V ILTG G  +FC+G D     R   
Sbjct: 28  ITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGG-SFCAGMDLKAFARGEN 86
Query: 144 ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGP 203
              E  G      L    R   KP+IA V GYA+ GG  L +  DL +AA ++ FG    
Sbjct: 87  VVVEGRG------LGFTERPPAKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEV 140
Query: 204 KVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250
           K G    G G   +   +    A E+       +AE A  +G+VN +
Sbjct: 141 KRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSAERAHALGMVNVL 187

>pdb|2NP9|A Chain A, Crystal Structure Of A Dioxygenase In The Crotonase Superfamily Length = 440

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 25/212 (11%)
Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG--------KGTEAFC 130
           +G+A++T+ R DR NA     V ++  A + A  D  V V +L G        +G   F 
Sbjct: 175 DGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFS 234
Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIR---------------RLPKPVIAMVAGY 175
           +G +    ++ G +  +   R  +  +   +R               R+ KP +A V G+
Sbjct: 235 AGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGF 294
Query: 176 AVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF 235
           A+GGG  L +V D  +A+ +A F     K G    G  +  + R  GP+ +R++    R 
Sbjct: 295 AIGGGAQLLLVFDRVLASSDAYFSLPAAKEGII-PGAANLRLGRFAGPRVSRQVILEGRR 353
Query: 236 YTAEEAEKMGLVNTVV-PVSLFVAYLMSLTKC 266
             A+E E   LV+ VV P  L  A   SLT+ 
Sbjct: 354 IWAKEPEARLLVDEVVEPDELDAAIERSLTRL 385

>pdb|1EF8|A Chain A, Crystal Structure Of Methylmalonyl Coa Decarboxylase Length = 261

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 8/176 (4%)
Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-QALRT 139
           +A I  N   + NA     + +L++A +D        +I+    G++ F +G D   L +
Sbjct: 14  VAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPS 73
Query: 140 --RDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAI 197
             RD  + Y++  R     +   I++ PKP+I+MV G   GG   + M  DL IAA  + 
Sbjct: 74  GGRDPLS-YDDPLR----QITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTST 128
Query: 198 FGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPV 253
           F  T   +G      G   ++R  G    +E+ F A   TA+ A  +G++N VV V
Sbjct: 129 FSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEV 184

>pdb|2Q2X|A Chain A, Crystal Structure Of The Ech2 Decarboxylase Domain Of Curf From Lyngbya Majuscula Length = 243

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 7/175 (4%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           +G G+ +IT      RN F P  V+ L   F+    +    V+ILTG G   F SG  + 
Sbjct: 9   LGNGVVQITXKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGN-YFSSGASKE 67
Query: 137 LRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
              R      +  G + VLDL   I     P+IA   G++ GGG +L +  D  + +  +
Sbjct: 68  YLIR------KTRGEVEVLDLSGLILDCEIPIIAAXQGHSFGGGLLLGLYADFVVFSQES 121
Query: 197 IFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
           ++     K G    G  S I+   +G + A+E  +    Y  +E  + G+   VV
Sbjct: 122 VYATNFXKYGFTPVGATSLILREKLGSELAQEXIYTGENYRGKELAERGIPFPVV 176

>pdb|3Q1T|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Avium Length = 278

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
           +G+  + ++ P   N+  P   ++L   +     D +V  +++ G+G +AF SGG   L 
Sbjct: 28  DGVLTVVLDSPGL-NSVGPQMHRDLADIWPVIDRDPAVRAVLVRGEG-KAFSSGGSFDL- 84
Query: 139 TRDGYADYENFGRLNVL----DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD 194
             +   DY+  GR+ ++    DL   +     PV++ + G AVG G V+ ++ D+++A  
Sbjct: 85  IDETIGDYQ--GRIRIMREARDLVHNMINCDTPVVSAIRGPAVGAGLVVALLADISVAGR 142
Query: 195 NAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
            A       K+G     + +     LVG  KA+           EEAE++GLV+  V
Sbjct: 143 TAKLIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLLGEEAERIGLVSLCV 199

>pdb|2GTR|A Chain A, Human Chromodomain Y-Like Protein Length = 261

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 18/203 (8%)
Query: 68  FTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
           + DI+  K   +G   I ++ +    N+  P  ++E+  A + A  D S  +++L+  G+
Sbjct: 4   YRDIVVRKQ--DGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDS-KLVLLSAVGS 60
Query: 127 EAFCSGGDQAL--------RTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVG 178
             FC G D           R R+     E     N ++  +Q +   KP+I  V G A+G
Sbjct: 61  -VFCCGLDFIYFIRRLTDDRKRESTKMAEAIR--NFVNTFIQFK---KPIIVAVNGPAIG 114
Query: 179 GGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTA 238
            G  +  +CD+  A + A F       G    G  + +  +++G   A EM    R  TA
Sbjct: 115 LGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTA 174
Query: 239 EEAEKMGLVNTVVPVSLFVAYLM 261
           +EA   GLV+ V     F   +M
Sbjct: 175 QEACGKGLVSQVFWPGTFTQEVM 197

>pdb|3NJB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis, Iodide Soak Length = 333

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 85/207 (41%), Gaps = 39/207 (18%)
Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           + YE  V + +A+IT NRP++ NA    T  EL      A  D  V VI+++G+G E FC
Sbjct: 37  MTYE--VTDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRG-EGFC 93
Query: 131 SGGD--------------------------QAL-----RTRDGYADYENFGRLNVLDLQV 159
           +G D                          QAL        D   DY+   R   +    
Sbjct: 94  AGFDLSAYAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRF--VRGFA 151
Query: 160 QIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR 219
            +    KP +  + GY V GG  + +  D  IAA +A  G    +V    A   + + + 
Sbjct: 152 SLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPA---AGLWAH 208
Query: 220 LVGPKKAREMWFLARFYTAEEAEKMGL 246
            +G ++A+ + F     T  +A + GL
Sbjct: 209 RLGDQRAKRLLFTGDCITGAQAAEWGL 235

>pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 8/144 (5%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-----QALR 138
           IT+NRP   NA   + ++++         D    +II+ G G +AFC+GGD     +A +
Sbjct: 19  ITLNRPKFLNALTLNXIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEK 78
Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
            +   A    F R     L   +    KP +A++ G   GGG  L +     +A +  +F
Sbjct: 79  AKQKIAPV--FFR-EEYXLNNAVGSCQKPYVALIHGITXGGGVGLSVHGQFRVATEKCLF 135
Query: 199 GQTGPKVGSFDAGYGSSIMSRLVG 222
                 +G F    G   + RL G
Sbjct: 136 AXPETAIGLFPDVGGGYFLPRLQG 159

>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 6/169 (3%)
Query: 98  HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-QALRTRDGYADYENFGRLNVLD 156
           H V ELI   +    D ++ V+++ G+G   F +G D +   +           +L  + 
Sbjct: 35  HDVTELI---DQVEKDDNIRVVVIHGEG-RFFSAGADIKEFTSVTEAKQATELAQLGQVT 90
Query: 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI 216
            + ++ +  KPVIA + G A+GGG      C    A ++A  G     +G      G+  
Sbjct: 91  FE-RVEKCSKPVIAAIHGAALGGGLEFAXSCHXRFATESAKLGLPELTLGLIPGFAGTQR 149
Query: 217 MSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTK 265
           + R VG  KA E    +   T  EA K GLVN V     F+   + + K
Sbjct: 150 LPRYVGKAKACEXXLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAK 198

>pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 12/164 (7%)
Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA-LRT 139
           +  I +NRP +RNA     +  L     D  D   +  +++ G G + F +G D + LR 
Sbjct: 26  VLTIGLNRPKKRNALNDGLMAALKDCLTDIPD--QIRAVVIHGIG-DHFSAGLDLSELRE 82
Query: 140 RD---GYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
           RD   G    + + R  V D ++Q  R+P  VIA + G  +GGG  L     + +A  +A
Sbjct: 83  RDATEGLVHSQTWHR--VFD-KIQYCRVP--VIAALKGAVIGGGLELACAAHIRVAEASA 137
Query: 197 IFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEE 240
            +       G F  G GS  + RL+G  +  +M    R Y+A E
Sbjct: 138 YYALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAE 181

>pdb|2A7K|A Chain A, Carboxymethylproline Synthase (carb) From Pectobacterium Carotovora, Apo Enzyme Length = 250

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 86/200 (43%), Gaps = 8/200 (4%)
Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           +++E+   E +  IT++ P++ N F       +  A   A  D SV  +++ G    +F 
Sbjct: 1   MVFEENSDE-VRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFS 59
Query: 131 SGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL 189
           +GGD   ++      D E +    V+DL   +  + KP IA V GYA+G G    ++ D 
Sbjct: 60  AGGDFNEVKQLSRSEDIEEWID-RVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQ 118
Query: 190 TIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNT 249
            + A  A F     K G      G++I+    G    +E+ +  +   A       LVN 
Sbjct: 119 RLMASTANFVMPELKHG-IGCSVGAAILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQ 177
Query: 250 VVPVSLFVAYLMSLTKCQAH 269
           VV  S     L+     QAH
Sbjct: 178 VVESSA----LLDAAITQAH 193

>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 14/206 (6%)
Query: 71  IIYE------KAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSV-GVIILT 122
           +IYE       A+  GI ++  + + +  N F   T+ EL +A +  + D+SV GVI+ +
Sbjct: 1   MIYEGKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS 60
Query: 123 GKGTEAFCSGGDQALRTRD-GYADYENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGG 180
           GK  + F  G D      +    D E   G L    +      L  P +A + G A+GGG
Sbjct: 61  GK--DVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGG 118
Query: 181 HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAE 239
             + +  D  + AD+A  G    K+G +  G+G ++ + RL+G   A E     +   AE
Sbjct: 119 LEMCLAADFRVMADSAKIGLPEVKLGIY-PGFGGTVRLPRLIGVDNAVEWIASGKENRAE 177
Query: 240 EAEKMGLVNTVVPVSLFVAYLMSLTK 265
           +A K+  V+ VV      A  + L K
Sbjct: 178 DALKVSAVDAVVTADKLGAAALDLIK 203

>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 8/159 (5%)
Query: 93  NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRL 152
           NA  P  ++E+      A  D +V  I++ G     FC+G D       G++ +     L
Sbjct: 42  NAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGN-FCAGADI-----HGFSAFTP--GL 93
Query: 153 NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGY 212
            +  L  +I+R  KPV+A + G A+GGG  L + C   IA   A  G     +G      
Sbjct: 94  ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPAVTLGILPGAR 153
Query: 213 GSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
           G+ ++ R+VG   A ++    ++ +A+EA ++G+++ VV
Sbjct: 154 GTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVV 192

>pdb|3RRV|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 276

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 78/178 (43%), Gaps = 4/178 (2%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA-LRTRDG 142
           IT+NRPD  N+        L R +    DD +    ++TG G  AF +GGD   L+    
Sbjct: 41  ITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAG-RAFSAGGDFGYLKELSA 99
Query: 143 YADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTG 202
            AD       +  ++ + + R   PV+A V G AVG G  L  + D+   A+NA      
Sbjct: 100 DADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPH 159
Query: 203 PKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV--PVSLFVA 258
            +VG   A  G       +    A+E        +A+ A ++GL N V   PV+  +A
Sbjct: 160 VQVGLVAADGGPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVADDPVAEAIA 217

>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 8/159 (5%)
Query: 93  NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRL 152
           NA  P  ++E+      A  D +V  I++ G     FC+G D       G++ +     L
Sbjct: 42  NAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGN-FCAGADI-----HGFSAFTP--GL 93
Query: 153 NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGY 212
            +  L  +I+R  KPV+A + G A+GGG  L + C   IA   A  G     +G      
Sbjct: 94  ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGAR 153
Query: 213 GSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
           G+ ++ R+VG   A ++    ++ +A+EA ++G+++ VV
Sbjct: 154 GTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVV 192

>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 8/159 (5%)
Query: 93  NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRL 152
           NA  P  ++E+      A  D +V  I++ G     FC+G D       G++ +     L
Sbjct: 27  NAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGN-FCAGADI-----HGFSAFTP--GL 78
Query: 153 NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGY 212
            +  L  +I+R  KPV+A + G A+GGG  L + C   IA   A  G     +G      
Sbjct: 79  ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGAR 138
Query: 213 GSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
           G+ ++ R+VG   A ++    ++ +A+EA ++G+++ VV
Sbjct: 139 GTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVV 177

>pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From Rhodobacter Sphaeroides 2.4.1 Length = 365

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 69  TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEA 128
           +D++  K    G  +IT++RP   NA     V+E+  A      D  V ++++  +G  A
Sbjct: 24  SDVLIRKVRRAG--RITLSRPAALNALTCAXVQEIDAALRGWIGDPEVELVVIDAEGPRA 81
Query: 129 FCSGGDQA-LRTRDGYADY---ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGG---- 180
           FC+GGD A L  R    D+   ++F R+       +I   PKP++++  G+  GGG    
Sbjct: 82  FCAGGDIAELHGRGVAGDHAFGQDFWRVEY-RXNDRIAAFPKPIVSLXQGFTXGGGVGLG 140
Query: 181 -HVLHMVCDLT 190
            H  H +   T
Sbjct: 141 CHARHRIVGET 151

>pdb|1SG4|A Chain A, Crystal Structure Of Human Mitochondrial Delta3-delta2- Enoyl-coa Isomerase Length = 260

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 78/184 (42%), Gaps = 4/184 (2%)
Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           ++ E   G G+A +    P   N+     + EL+ +     +D S   +ILT      F 
Sbjct: 5   VLVEPDAGAGVAVMKFKNPPV-NSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFS 63
Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
           +G D         A Y  + +  V +L +++ +    +++ + G    GG ++ + CD  
Sbjct: 64  AGLDLTEMCGRSPAHYAGYWK-AVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYR 122
Query: 191 IAADNAIF--GQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVN 248
           I ADN  +  G    ++G     +    +   +G + A     L   +   EA ++G+V+
Sbjct: 123 ILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVD 182
Query: 249 TVVP 252
            VVP
Sbjct: 183 QVVP 186

>pdb|3ISA|A Chain A, Crystal Structure Of Putative Enoyl-Coa HydrataseISOMERASE FROM Bordetella Parapertussis Length = 254

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 70/172 (40%), Gaps = 20/172 (11%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143
            T++RP++RNA     V+ LI    DA     V +++  G G   F +G D        +
Sbjct: 20  FTLSRPEKRNALSAELVEALIDGV-DAAHREQVPLLVFAGAGRN-FSAGFD--------F 69
Query: 144 ADYENFGRLNVLDLQVQIRRL-------PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
            DYE     ++L   V+I  L       P   +A+  G   G G  L   C        A
Sbjct: 70  TDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEA 129
Query: 197 IFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVN 248
            F   G K G      G+     +VG  +A  +   AR + A+EA ++G V 
Sbjct: 130 GFRMPGLKFGLV---LGTRRFRDIVGADQALSILGSARAFDADEARRIGFVR 178

>pdb|1XX4|A Chain A, Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Coa Length = 261

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 10/187 (5%)
Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           ++ EK    GIA +    P   N+     + E + +     +D S+  +ILT +    F 
Sbjct: 6   VLVEKEGEAGIAVMKFKNPPV-NSLSLEFLTEFVISLEKLENDKSIRGVILTSERPGIFS 64
Query: 131 SGGDQAL---RTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
           +G D      R    YA+Y  +  +  L L++ +  L   +I+ + G +  GG ++ + C
Sbjct: 65  AGLDLMEMYGRNPAHYAEY--WKAVQELWLRLYLSNLT--LISAINGASPAGGCLMALTC 120
Query: 188 DLTIAADNAIF--GQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMG 245
           D  I ADN+ +  G     +G     +        +G + A     L   +   EA K+G
Sbjct: 121 DYRIMADNSKYTIGLNESLLGIVAPFWLKDNYVNTIGHRAAERALQLGTLFPPAEALKVG 180
Query: 246 LVNTVVP 252
           LV+ VVP
Sbjct: 181 LVDEVVP 187

>pdb|3H0U|A Chain A, Crystal Structure Of A Putative Enoyl-Coa Hydratase From Streptomyces Avermitilis Length = 289

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 160 QIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSIMS 218
           ++ +LP   IA + G A G G    + CD+  A+ +NAI GQ    +G+         ++
Sbjct: 98  KLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLT 157
Query: 219 RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           RL+G  +A E    +  + A+ AE+ G VN  VP
Sbjct: 158 RLLGRGRALEAVLTSSDFDADLAERYGWVNRAVP 191

>pdb|3GKB|A Chain A, Crystal Structure Of A Putative Enoyl-coa Hydratase From Streptomyces Avermitilis Length = 287

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 76/188 (40%), Gaps = 10/188 (5%)
Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT 139
           G+A+I ++ P   N      ++EL        DDSSV VI+ +    E F +  D  +R 
Sbjct: 18  GVARIILDNPPV-NVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVD--MRI 74
Query: 140 RDGYADYENFGRLNVLDLQV------QIRRLPKPVIAMVAGYAVGGG-HVLHMVCDLTIA 192
            +     +        D+ V       IR  P+  I  +AG A GGG   +        A
Sbjct: 75  GEKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAA 134
Query: 193 ADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           A+ A  GQ    +G    G G+  +   VG  +A E+   A  + AE A   G +N  +P
Sbjct: 135 AETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALP 194
Query: 253 VSLFVAYL 260
                 Y+
Sbjct: 195 ADELDEYV 202

>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 6/183 (3%)
Query: 78  GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG-KGTEAFCSGGDQA 136
           G+G+A IT+  P   N+     +  L   + +A   + V  I++TG KG   F  G D +
Sbjct: 15  GDGVAVITLINPPV-NSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGR--FSGGFDIS 71
Query: 137 L--RTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD 194
                + G       G +++  +   +    KP +A + G A+GGG  L M C   I+A 
Sbjct: 72  GFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAP 131
Query: 195 NAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVS 254
            A  G    ++G      G+  + RLVG  KA EM   ++   AEE   +GL++ VVP +
Sbjct: 132 AAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPPA 191
Query: 255 LFV 257
             V
Sbjct: 192 ELV 194

>pdb|3G64|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Streptomyces Coelicolor A3(2) Length = 279

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 9/181 (4%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-- 134
           + +G+A +T+ RPD+ NA       +L     +     +V  ++L G+G   FCSGGD  
Sbjct: 23  ITDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEG-RGFCSGGDVD 81
Query: 135 ---QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTI 191
               A  + D  A   +F R     ++  +R  P PVIA + G A G G VL +  D  +
Sbjct: 82  EIIGATLSXD-TARLLDFNRXTGQVVRA-VRECPFPVIAALHGVAAGAGAVLALAADFRV 139
Query: 192 AADNAIFGQTGPKVGSFDAGYGSS-IMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250
           A  +  F     +VG      G++ ++ R+VG   A  +  L     A EAE++GL++ +
Sbjct: 140 ADPSTRFAFLFTRVGLSGGDXGAAYLLPRVVGLGHATRLLXLGDTVRAPEAERIGLISEL 199
Query: 251 V 251
Sbjct: 200 T 200

>pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT 139
           G+  +T+NRP   N+     V  +        +D SV  ++LTG G    C+GGD     
Sbjct: 18  GVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIY 77
Query: 140 RDGYADYENFGR--LNVLDLQVQIRRLPKPVIAMV 172
               AD     R   +   L   I R PKP ++++
Sbjct: 78  HSAKADGAEARRFWFDEYRLNAHIGRYPKPYVSIM 112

>pdb|2J5G|D Chain D, The Native Structure Of A Beta-Diketone Hydrolase From The Cyanobacterium Anabaena Sp. Pcc 7120 Length = 263

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 27/188 (14%)
Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEA-----FCSGGD 134
           GI ++ ++       F   T +E   AF D   D    V+ILTG G        F S GD
Sbjct: 33  GILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGD 92
Query: 135 QALRTRDGYADYENFGRL--NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH----MVCD 188
                R+    Y    ++  N+LD++V       PVI+     AV G  +LH    +  D
Sbjct: 93  -VTNPREWDKTYWEGKKVLQNLLDIEV-------PVIS-----AVNGAALLHSEYILTTD 139
Query: 189 LTIAADNAIFGQTGPKVGS-FDAGYGSSIMSRL-VGPKKAREMWFLARFYTAEEAEKMGL 246
           + +A++N +F Q  P + +    G G  I+  L +G  + R   F     TA++A ++ +
Sbjct: 140 IILASENTVF-QDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNV 198
Query: 247 VNTVVPVS 254
           V+ V+P S
Sbjct: 199 VHEVLPQS 206

>pdb|2J5G|A Chain A, The Native Structure Of A Beta-Diketone Hydrolase From The Cyanobacterium Anabaena Sp. Pcc 7120 Length = 263

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 27/188 (14%)
Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEA-----FCSGGD 134
           GI ++ ++       F   T +E   AF D   D    V+ILTG G        F S GD
Sbjct: 33  GILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGD 92
Query: 135 QALRTRDGYADYENFGRL--NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH----MVCD 188
                R+    Y    ++  N+LD++V       PVI+     AV G  +LH    +  D
Sbjct: 93  -VTNPREWDKTYWEGKKVLQNLLDIEV-------PVIS-----AVNGAALLHSEYILTTD 139
Query: 189 LTIAADNAIFGQTGPKVGS-FDAGYGSSIMSRL-VGPKKAREMWFLARFYTAEEAEKMGL 246
           + +A++N +F Q  P + +    G G  I+  L +G  + R   F     TA++A ++ +
Sbjct: 140 IILASENTVF-QDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNV 198
Query: 247 VNTVVPVS 254
           V+ V+P S
Sbjct: 199 VHEVLPQS 206

>pdb|3M6M|A Chain A, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc Length = 305

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 39/84 (46%)
Query: 169 IAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228
           IA+V G A+GGG    + C   IA +  + G        F      S M + +    A++
Sbjct: 144 IALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRISAHLAQK 203
Query: 229 MWFLARFYTAEEAEKMGLVNTVVP 252
           +      Y+AE+   MGLV+ VVP
Sbjct: 204 IMLEGNLYSAEQLLGMGLVDRVVP 227

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	1e-115
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	1e-115
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	1e-114
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	1e-105
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	9e-95
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	4e-86
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	9e-63
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	4e-61
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	1e-60
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	5e-60
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	5e-60
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	1e-59
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	4e-59
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	4e-59
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	5e-59
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	1e-58
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	2e-58
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	3e-58
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	3e-58
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	5e-58
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	6e-58
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	1e-57
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	1e-57
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	1e-57
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	1e-57
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	2e-57
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	2e-57
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	2e-57
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	2e-57
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	3e-57
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	3e-57
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	4e-57
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	6e-57
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	9e-57
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	2e-56
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	3e-56
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	6e-56
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	8e-56
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	8e-56
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	1e-55
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	2e-55
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	3e-55
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	9e-55
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	1e-54
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	3e-54
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	3e-54
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	3e-54
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	4e-54
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	8e-54
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	9e-54
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	7e-53
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	1e-52
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	1e-52
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	2e-52
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	3e-52
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	3e-52
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	4e-52
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	6e-51
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	8e-51
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	3e-50
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	4e-50
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	5e-50
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	2e-49
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	6e-49
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	7e-49
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	8e-46
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	4e-45
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	1e-39
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	2e-04
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	8e-24
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	9e-24
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	5e-21
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	2e-18
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	5e-18

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score =  331 bits (850), Expect = e-115
 Identities = 128/190 (67%), Positives = 149/190 (78%), Gaps = 2/190 (1%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
           E+  E+ +I YE    EGIAK+TINRP+ RNAF P TV E+I AF+ ARDD +V VI+LT
Sbjct: 7   ETLREYDEIKYEFY--EGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLT 64

Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
           G+G  AFCSGGDQ  R   GY   +   RLNVLDLQ  IR +PKPVIAMV GYAVGGG+V
Sbjct: 65  GEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNV 124

Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
           L++VCDLTIAADNAIFGQTGPKVGSFDAGYGS  ++R+VG KKARE+W+L R Y A+EA 
Sbjct: 125 LNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEAL 184

Query: 243 KMGLVNTVVP 252
            MGLVNTVVP
Sbjct: 185 DMGLVNTVVP 194

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score =  331 bits (850), Expect = e-115
 Identities = 129/192 (67%), Positives = 149/192 (77%), Gaps = 2/192 (1%)

Query: 62  DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
            +    F DI YEK+  +GIAKITINRP  RNAFRP TVKE+I+A  DAR D ++GVIIL
Sbjct: 20  HDCSEGFEDIRYEKS-TDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIIL 78

Query: 122 TGKGTEAFCSGGDQALRTRDGYA-DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGG 180
           TG G +AFCSGGDQ +R   G   D      LNVLD Q QIR  PKPV+AMVAGY++GGG
Sbjct: 79  TGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGG 138

Query: 181 HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEE 240
           HVLHM+CDLTIAADNAIFGQTGPKVGSFD G+G+S M+R+VG KKARE+WFL R Y A++
Sbjct: 139 HVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQ 198

Query: 241 AEKMGLVNTVVP 252
           A  MGLVNTVVP
Sbjct: 199 ALDMGLVNTVVP 210

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score =  329 bits (845), Expect = e-114
 Identities = 127/196 (64%), Positives = 153/196 (78%), Gaps = 7/196 (3%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
                + DI+Y KA   GIAKI INRP +RNAFRP TV EL  AF +AR+D+ +GV++LT
Sbjct: 4   HIAKHYDDILYYKA--GGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLT 61

Query: 123 GKGTE-----AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177
           G G       AFCSGGDQ++R   GY D +   RLNVLDLQ  IR +PK VIA+VAGYA+
Sbjct: 62  GAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAI 121

Query: 178 GGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT 237
           GGGHVLH+VCDLTIAADNAIFGQTGPKVGSFD G+GSS ++R+VG KKARE+W+L R Y+
Sbjct: 122 GGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYS 181

Query: 238 AEEAEKMGLVNTVVPV 253
           A+EAE+MG+VNTVVPV
Sbjct: 182 AQEAERMGMVNTVVPV 197

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score =  308 bits (790), Expect = e-105
 Identities = 106/253 (41%), Positives = 142/253 (56%), Gaps = 23/253 (9%)

Query: 17  NHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKA 76
           +H   ++   S+     +  A           + P     WR+   +   + TDI Y + 
Sbjct: 9   HHSSGLVPRGSHM----VAPAGEQGRSSTALSDNPFDAKAWRLV--DGFDDLTDITYHRH 62

Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG------TEAFC 130
           V +   ++  NRP+ RNAFRPHTV EL R  + AR    VGV++LTG G        AFC
Sbjct: 63  VDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFC 122

Query: 131 SGGDQALRTRDGY----------ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGG 180
           SGGDQ +R R GY           D    GRL++L++Q  IR +PK VI +V G+A GGG
Sbjct: 123 SGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGG 182

Query: 181 HVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE 239
           H LH+VCDLT+A+ + A F QT   VGSFD GYGS+ ++R VG K ARE++FL R YTAE
Sbjct: 183 HSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAE 242

Query: 240 EAEKMGLVNTVVP 252
           +  +MG VN V  
Sbjct: 243 QMHQMGAVNAVAE 255

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score =  279 bits (715), Expect = 9e-95
 Identities = 67/200 (33%), Positives = 97/200 (48%), Gaps = 9/200 (4%)

Query: 57  WRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSV 116
           WR            I Y+ +  + IA IT+NRP+  NA  P  + EL  A+  A +D+ V
Sbjct: 8   WRRPSRPEQRTEMYIDYDVS--DRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDV 65

Query: 117 GVIILTGKGTEAFCSGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172
            VI+L   G + F +G D      +  +              L+  ++ R +PKP IA V
Sbjct: 66  SVIVLRANG-KHFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAV 124

Query: 173 AGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFL 232
            G  + GG +L   CDL IAA++A+F    P V     G      +  +GP+KA+E+ F 
Sbjct: 125 QGRCISGGLLLCWPCDLIIAAEDALFSD--PVVLMDIGGVEYHGHTWELGPRKAKEILFT 182

Query: 233 ARFYTAEEAEKMGLVNTVVP 252
            R  TAEE  + G+VN VVP
Sbjct: 183 GRAMTAEEVAQTGMVNRVVP 202

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score =  257 bits (658), Expect = 4e-86
 Identities = 60/201 (29%), Positives = 90/201 (44%), Gaps = 7/201 (3%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
            +  +  E    +GIA + +NRP++RNA  P   +E+I        D + GV++LTG G 
Sbjct: 7   RWKTVKVEIE--DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG- 63

Query: 127 EAFCSGGDQA----LRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
           EA+ +G D                E   R         +R   KP IAMV G+  GGG  
Sbjct: 64  EAWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFS 123

Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
             + CDL I AD A FG +    G       S  M+  VG +++       + +  ++A 
Sbjct: 124 PLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAA 183

Query: 243 KMGLVNTVVPVSLFVAYLMSL 263
           +MGLVN  VP++      + L
Sbjct: 184 EMGLVNESVPLAQLREVTIEL 204

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score =  199 bits (508), Expect = 9e-63
 Identities = 48/219 (21%), Positives = 77/219 (35%), Gaps = 37/219 (16%)

Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
                  + YE    + +A+IT NRP++ NA    T  EL      A  D  V VI+++G
Sbjct: 30  DFDNLKTMTYEVT--DRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSG 87

Query: 124 KGTEAFCSGGDQALRTRDGYADYENFGRLN-----------------------------V 154
           +G E FC+G D +       +                                       
Sbjct: 88  RG-EGFCAGFDLSAYAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRF 146

Query: 155 LDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSF-DAGYG 213
           +     +    KP +  + GY V GG  + +  D  IAA +A  G    +V     AG  
Sbjct: 147 VRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAGL- 205

Query: 214 SSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
               +  +G ++A+ + F     T  +A + GL      
Sbjct: 206 ---WAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPD 241

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score =  193 bits (492), Expect = 4e-61
 Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 6/188 (3%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
             +D++YE    + +  +T+NR  + NAF    + E+    + A +D++V VI+L   G 
Sbjct: 2   SLSDLLYEIQ--DKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANG- 58

Query: 127 EAFCSGGD-QALRTRDGYADYENFGRLNVL-DLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
           + F +G D   +++   + + EN     VL +L   I + PKP IAMV G A GGG  L 
Sbjct: 59  KHFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLA 118

Query: 185 MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKM 244
             CD+ IA+ +A F  +  K+G   A   S  + R +G + A+ ++  A  + A  A  +
Sbjct: 119 AACDIAIASTSARFCFSEVKLGLIPAV-ISPYVVRAIGERAAKMLFMSAEVFDATRAYSL 177

Query: 245 GLVNTVVP 252
            LV   VP
Sbjct: 178 NLVQHCVP 185

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score =  191 bits (487), Expect = 1e-60
 Identities = 48/194 (24%), Positives = 82/194 (42%), Gaps = 5/194 (2%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           +  E +  + +  IT++ P++ N F       +  A   A  D SV  +++ G    +F 
Sbjct: 2   VFEENS--DEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFS 59

Query: 131 SGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL 189
           +GGD   ++      D E +    V+DL   +  + KP IA V GYA+G G    ++ D 
Sbjct: 60  AGGDFNEVKQLSRSEDIEEWID-RVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQ 118

Query: 190 TIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNT 249
            + A  A F     K G      G++I+    G    +E+ +  +   A       LVN 
Sbjct: 119 RLMASTANFVMPELKHGIG-CSVGAAILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQ 177

Query: 250 VVPVSLFVAYLMSL 263
           VV  S  +   ++ 
Sbjct: 178 VVESSALLDAAITQ 191

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score =  190 bits (486), Expect = 5e-60
 Identities = 65/204 (31%), Positives = 96/204 (47%), Gaps = 4/204 (1%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
             G+    ++ +     G+  +T+NRP   NA     +  L  AF    +D SV  ++L 
Sbjct: 18  GPGSMSEPLLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLA 77

Query: 123 GKGTEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
             G +AFC+G D + +R       YE        D+ + I+RLP PVIA V G A   G 
Sbjct: 78  ASG-KAFCAGHDLKEMRAEPSREYYEKLFAR-CTDVMLAIQRLPAPVIARVHGIATAAGC 135

Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEA 241
            L  +CDL +A  +A F  +G  VG F        +SR VG K A EM     F +A++A
Sbjct: 136 QLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRNVGRKAAFEMLVTGEFVSADDA 194

Query: 242 EKMGLVNTVVPVSLFVAYLMSLTK 265
           + +GLVN VV        + ++  
Sbjct: 195 KGLGLVNRVVAPKALDDEIEAMVS 218

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score =  190 bits (484), Expect = 5e-60
 Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 7/190 (3%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
             + +  E         IT++ P+++N         L+ A     +++S+  IIL  K  
Sbjct: 2   SLSYVHTEIQ--NDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHR 59

Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQ---VQIRRLPKPVIAMVAGYAVGGGHVL 183
             F SG              +   R  +  L    ++I   PK  +A++ GYA GGG  +
Sbjct: 60  AYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNM 119

Query: 184 HMVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
            + CD  IA   A F +   K+G   D G  S  + R++G ++   +    + +T+EEA 
Sbjct: 120 MLACDRRIALRRAKFLENFHKMGISPDLG-ASYFLPRIIGYEQTMNLLLEGKLFTSEEAL 178

Query: 243 KMGLVNTVVP 252
           ++GL+  +  
Sbjct: 179 RLGLIQEICE 188

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score =  189 bits (482), Expect = 1e-59
 Identities = 51/198 (25%), Positives = 79/198 (39%), Gaps = 5/198 (2%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
               +  +      +  +T+NRP+  NAF         +A  DA DD  V V++LTG G 
Sbjct: 4   SMVTLQIDDD--NRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSG- 60

Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
             F +G D A           + G+     L   +   PKP+I  V G  VG G  +   
Sbjct: 61  RGFSAGTDLAEMQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGY 120

Query: 187 CDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMG 245
            DL   +  A        +G   +A   S ++ +LVG + A  +   + +  AEEA +MG
Sbjct: 121 ADLAFMSSTARLKCPFTSLGVAPEAA-SSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMG 179

Query: 246 LVNTVVPVSLFVAYLMSL 263
           LV  +      +      
Sbjct: 180 LVWRICSPEELLPEARRH 197

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score =  187 bits (478), Expect = 4e-59
 Identities = 62/195 (31%), Positives = 97/195 (49%), Gaps = 6/195 (3%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           ++  +     +A + +N P+RRN   P     L++A +D   D  V  ++LTG+G +AF 
Sbjct: 1   MVQVEK--GHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRG-KAFS 57

Query: 131 SGGD-QALRTRDGYADYENFG-RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCD 188
           +G D   L         EN+   L+++ L  ++   PKP +A V G AV GG  L + CD
Sbjct: 58  AGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACD 117

Query: 189 LTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVN 248
           L +  + A  G T  K+G   A   S I+ R VG K A+++    R   A EA+ +GLVN
Sbjct: 118 LVVMDEEARLGYTEVKIGFVAAL-VSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVN 176

Query: 249 TVVPVSLFVAYLMSL 263
            + P    +    +L
Sbjct: 177 RIAPPGKALEEAKAL 191

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  187 bits (478), Expect = 4e-59
 Identities = 66/197 (33%), Positives = 94/197 (47%), Gaps = 7/197 (3%)

Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           +  I YE      +A +T+NRPD+ NAF      E+ +A   A  D +V  +++TG G  
Sbjct: 2   YETIRYEVK--GQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAG-R 58

Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
           AFC+G D  L       D+ +  R     +   +  L KPV+A V G A G G  L + C
Sbjct: 59  AFCAGED--LSGVTEEMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALAC 116

Query: 188 DLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
           D  + ++ A F      VG   DAG     + RLVG  KA E+  L    TAEEA  +GL
Sbjct: 117 DFRLLSEKASFAPAFIHVGLVPDAG-HLYYLPRLVGRAKALELAVLGEKVTAEEAAALGL 175

Query: 247 VNTVVPVSLFVAYLMSL 263
              V+P+S +   +   
Sbjct: 176 ATKVIPLSDWEEEVKQF 192

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score =  188 bits (479), Expect = 5e-59
 Identities = 54/198 (27%), Positives = 97/198 (48%), Gaps = 11/198 (5%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
           +     + ++ ++     IA +T+NRP+R NA     +    +   D   D+ V  +++T
Sbjct: 17  QGPGSMSFVLVDR-PRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVIT 75

Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQV------QIRRLPKPVIAMVAGYA 176
           G G   FCSG DQ       +        + +  +++       +RR+ +PVIA + G A
Sbjct: 76  GAGK-GFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAA 134

Query: 177 VGGGHVLHMVCDLTIAADNAIFGQTGPKVG--SFDAGYGSSIMSRLVGPKKAREMWFLAR 234
           +GGG  L + CD+ +A+ +A F   G   G  + + G  S ++ R +G  +A ++    R
Sbjct: 135 IGGGLCLALACDVRVASQDAYFRAAGINNGLTASELG-LSYLLPRAIGTSRASDIMLTGR 193

Query: 235 FYTAEEAEKMGLVNTVVP 252
              A+EAE++GLV+  V 
Sbjct: 194 DVDADEAERIGLVSRKVA 211

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score =  185 bits (473), Expect = 1e-58
 Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 11/183 (6%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
            + E     G+ +IT+     RN F P  V+ L   F+    +    V+ILTG G   F 
Sbjct: 5   QLTELG--NGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYG-NYFS 61

Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
           SG  +    R    + E        DL   I     P+IA + G++ GGG +L +  D  
Sbjct: 62  SGASKEFLIRKTRGEVEVL------DLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFV 115

Query: 191 IAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNT 249
           + +  +++     K G        S I+   +G + A+EM +    Y  +E  + G+   
Sbjct: 116 VFSQESVYATNFMKYGFTPVGA-TSLILREKLGSELAQEMIYTGENYRGKELAERGIPFP 174

Query: 250 VVP 252
           VV 
Sbjct: 175 VVS 177

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score =  186 bits (474), Expect = 2e-58
 Identities = 61/201 (30%), Positives = 97/201 (48%), Gaps = 9/201 (4%)

Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           +  I +     +G+A+ITI  P  RNA     ++E+  A N A +D SVG +++TG   +
Sbjct: 2   YEAIGHRVE--DGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAE-D 58

Query: 128 AFCSGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
           AFC+G         +   G  D+     L    +  +I R+ +PV+A + G A GGG  +
Sbjct: 59  AFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGI 118

Query: 184 HMVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
            +  D+ I AD+A F      +G   D    S  ++R+VG ++A E+    R    EEA+
Sbjct: 119 SLASDMAICADSAKFVCAWHTIGIGNDTA-TSYSLARIVGMRRAMELMLTNRTLYPEEAK 177

Query: 243 KMGLVNTVVPVSLFVAYLMSL 263
             GLV+ V P   F      +
Sbjct: 178 DWGLVSRVYPKDEFREVAWKV 198

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score =  185 bits (473), Expect = 3e-58
 Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 6/189 (3%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
            +F  + +E     G+  + ++ P   N+  P   ++L   +     D  V V+++ G+G
Sbjct: 10  QDFPSLRFEPGEH-GVLNLVLDSPGL-NSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEG 67

Query: 126 TEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
             AF SGG  + +    G  +          DL + +  L KPV++ + G AVG G V+ 
Sbjct: 68  K-AFSSGGSFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVA 126

Query: 185 MVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEK 243
           ++ D+++A+  A       K+G        +     LVG  KA+         + EEAE+
Sbjct: 127 LLADISVASATAKIIDGHTKLGVAAGDH-AAICWPLLVGMAKAKYYLLTCETLSGEEAER 185

Query: 244 MGLVNTVVP 252
           +GLV+T V 
Sbjct: 186 IGLVSTCVD 194

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score =  184 bits (470), Expect = 5e-58
 Identities = 43/188 (22%), Positives = 71/188 (37%), Gaps = 10/188 (5%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
           +    +  E+         T++RP++RNA     V+ LI   + A  +  V +++  G G
Sbjct: 4   SASLPLAIERR--PAAWTFTLSRPEKRNALSAELVEALIDGVDAAHREQ-VPLLVFAGAG 60

Query: 126 TEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
              F +G D     T+          R+    L  ++   P   +A+  G   G G  L 
Sbjct: 61  -RNFSAGFDFTDYETQSEGDLLLRMVRIE--MLLQRVAGSPSLTLALAHGRNFGAGVDLF 117

Query: 185 MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKM 244
             C        A F   G K G      G+     +VG  +A  +   AR + A+EA ++
Sbjct: 118 AACKWRYCTPEAGFRMPGLKFGLV---LGTRRFRDIVGADQALSILGSARAFDADEARRI 174

Query: 245 GLVNTVVP 252
           G V     
Sbjct: 175 GFVRDCAA 182

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score =  185 bits (472), Expect = 6e-58
 Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 13/193 (6%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
           E+  +  E    +G+A +T+ RPD+ NA       +L     +     +V  ++L G+G 
Sbjct: 15  EWRHLRVEIT--DGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEG- 71

Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVL-----DLQVQIRRLPKPVIAMVAGYAVGGGH 181
             FCSGGD  +    G     +  RL         +   +R  P PVIA + G A G G 
Sbjct: 72  RGFCSGGD--VDEIIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGA 129

Query: 182 VLHMVCDLTIAADNAIFGQTGPKVG--SFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE 239
           VL +  D  +A  +  F     +VG    D G  + ++ R+VG   A  +  L     A 
Sbjct: 130 VLALAADFRVADPSTRFAFLFTRVGLSGGDMG-AAYLLPRVVGLGHATRLLMLGDTVRAP 188

Query: 240 EAEKMGLVNTVVP 252
           EAE++GL++ +  
Sbjct: 189 EAERIGLISELTE 201

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score =  184 bits (469), Expect = 1e-57
 Identities = 55/191 (28%), Positives = 81/191 (42%), Gaps = 6/191 (3%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
            S T+    + E+     +  ITINRP+ RNA        +  A  +A+ D  V  ++LT
Sbjct: 3   GSMTDAPGALAERR--GNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLT 60

Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
           G G ++FC+G D     R     + +               + KP IA V G A+GGG  
Sbjct: 61  GAGDKSFCAGADLKAIARRENLYHPDHPEWGFAGY--VRHFIDKPTIAAVNGTALGGGTE 118

Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEA 241
           L +  DL +A + A FG    K G   A  G    ++  +  K A  +       +A  A
Sbjct: 119 LALASDLVVADERAQFGLPEVKRGLI-AAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAA 177

Query: 242 EKMGLVNTVVP 252
              GL+N VV 
Sbjct: 178 RDWGLINEVVE 188

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score =  184 bits (469), Expect = 1e-57
 Identities = 51/193 (26%), Positives = 80/193 (41%), Gaps = 10/193 (5%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
           +   D +  + + EG+  +T+ R    +      +  L  A   A  D  V V+++ G G
Sbjct: 2   SLSQDGLLGEVLSEGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPG 60

Query: 126 TEAFCSGGD------QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 179
              FC+G D            +G A   +        L + +   PKP IA+V G A   
Sbjct: 61  -RIFCAGHDLKEIGRHRADPDEGRAFVTDLFEA-CSALMLDLAHCPKPTIALVEGIATAA 118

Query: 180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE 239
           G  L   CDL  A+  A F   G + G F     +  +SR++G +   EM      Y A+
Sbjct: 119 GLQLMAACDLAYASPAARFCLPGVQNGGF-CTTPAVAVSRVIGRRAVTEMALTGATYDAD 177

Query: 240 EAEKMGLVNTVVP 252
            A   GL+N ++P
Sbjct: 178 WALAAGLINRILP 190

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score =  184 bits (470), Expect = 1e-57
 Identities = 51/187 (27%), Positives = 77/187 (41%), Gaps = 6/187 (3%)

Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
            T+I         +  IT+NRPD  N+        L R +    DD +    ++TG G  
Sbjct: 27  PTEIDVRAD--GALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGR- 83

Query: 128 AFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
           AF +GGD   L+     AD       +  ++ + + R   PV+A V G AVG G  L  +
Sbjct: 84  AFSAGGDFGYLKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVAL 143

Query: 187 CDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMG 245
            D+   A+NA       +VG     G G       +    A+E        +A+ A ++G
Sbjct: 144 SDIVYIAENAYLADPHVQVGLVAADG-GPLTWPLHISLLLAKEYALTGTRISAQRAVELG 202

Query: 246 LVNTVVP 252
           L N V  
Sbjct: 203 LANHVAD 209

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score =  183 bits (467), Expect = 1e-57
 Identities = 63/197 (31%), Positives = 92/197 (46%), Gaps = 12/197 (6%)

Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
              I  E      + +I ++RP++ NA     ++EL     DA  D SV  ++LTG G  
Sbjct: 5   MNGISVEHD--GAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAG-R 61

Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
           AFCSGGD       G AD  N        +   I  LPKPVIA V G AVG G  L + C
Sbjct: 62  AFCSGGDLTGGDTAGAADAAN-------RVVRAITSLPKPVIAGVHGAAVGFGCSLALAC 114

Query: 188 DLTIAADNAIFGQTGPKVG-SFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
           DL +AA  + F     +VG   D G  S+++  L+G  +   M   A   +A  A + G+
Sbjct: 115 DLVVAAPASYFQLAFTRVGLMPDGG-ASALLPLLIGRARTSRMAMTAEKISAATAFEWGM 173

Query: 247 VNTVVPVSLFVAYLMSL 263
           ++ +     + + L  +
Sbjct: 174 ISHITSADEYESVLTDV 190

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score =  183 bits (466), Expect = 2e-57
 Identities = 44/194 (22%), Positives = 75/194 (38%), Gaps = 10/194 (5%)

Query: 62  DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
            E   ++ +I  E+    G+  +T++   +   +      EL   F+D   D    V+IL
Sbjct: 9   QEYSQKYENIRLERD--GGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVIL 66

Query: 122 TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
           TG G  +FC+  D          D++         L   +  +  PVIA V G       
Sbjct: 67  TGTG-PSFCNEIDFTSFNLGTPHDWDEIIFE-GQRLLNNLLSIEVPVIAAVNGPVTNAPE 124

Query: 182 VLHMVCDLTIAADNAIFGQTGP--KVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTA 238
            + ++ D+ +AA++A F   GP    G     G    +   ++G  + R      +   A
Sbjct: 125 -IPVMSDIVLAAESATFQD-GPHFPSGIVPGDG-AHVVWPHVLGSNRGRYFLLTGQELDA 181

Query: 239 EEAEKMGLVNTVVP 252
             A   G VN V+ 
Sbjct: 182 RTALDYGAVNEVLS 195

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score =  183 bits (467), Expect = 2e-57
 Identities = 58/188 (30%), Positives = 97/188 (51%), Gaps = 4/188 (2%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
            +  +I  + A    + KI++NR  + N+     ++EL        ++++  V+ILTG G
Sbjct: 5   LQLQNISVDYA-TPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAG 63

Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
            +AFC+G D   R         +     +      + +LP+PVIA + G A+GGG  L +
Sbjct: 64  EKAFCAGADLKERAGMNEEQVRHAVS-MIRTTMEMVEQLPQPVIAAINGIALGGGTELSL 122

Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEAEKM 244
            CD  IAA++A  G T   +     G G +  + RL+G  +A+E+ +  R  +A+EA++ 
Sbjct: 123 ACDFRIAAESASLGLTETTLAII-PGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEY 181

Query: 245 GLVNTVVP 252
           GLV  VVP
Sbjct: 182 GLVEFVVP 189

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score =  183 bits (466), Expect = 2e-57
 Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 8/194 (4%)

Query: 62  DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
            E  T++ ++ + +    GI ++ ++       F   T +E   AF D   D    V+IL
Sbjct: 16  PEYFTKYENLHFHRDEN-GILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVIL 74

Query: 122 TGKGTEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGG 180
           TG G +A+ +  D  +L       +++         +   +  +  PVI+ V G A+   
Sbjct: 75  TGSG-DAWMAEIDFPSLGDVTNPREWDKTYWEG-KKVLQNLLDIEVPVISAVNGAALLHS 132

Query: 181 HVLHMVCDLTIAADNAIF-GQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTA 238
               +  D+ +A++N +F        G    G G  I     +G  + R   F     TA
Sbjct: 133 E-YILTTDIILASENTVFQDMPHLNAGIV-PGDGVHILWPLALGLYRGRYFLFTQEKLTA 190

Query: 239 EEAEKMGLVNTVVP 252
           ++A ++ +V+ V+P
Sbjct: 191 QQAYELNVVHEVLP 204

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score =  183 bits (467), Expect = 2e-57
 Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 5/192 (2%)

Query: 62  DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
             S +++  +   +     +  I +NRP +RNAF    ++EL  A  +   D+ +   +L
Sbjct: 2   PGSMSDYETLRIRRD--GYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVL 59

Query: 122 TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
            G+G   F +G D A    +            +   QV  R+L KP++  V G  +  G 
Sbjct: 60  YGEG-PLFTAGLDLASVAAEIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGI 118

Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEE 240
            L +  D+ IA + A F Q     G +    G++I   R  G   A      A  + A E
Sbjct: 119 ELALAADIVIADETATFAQLEVNRGIY-PFGGATIRFPRTAGWGNAMRWMLTADTFDAVE 177

Query: 241 AEKMGLVNTVVP 252
           A ++G+V  +VP
Sbjct: 178 AHRIGIVQEIVP 189

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score =  183 bits (466), Expect = 3e-57
 Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 6/189 (3%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
           +    +        G+  + INRP+ +NA        + +A ++A  +  V V++L G  
Sbjct: 2   SLHPHLNANLE--GGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAE 59

Query: 126 TEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
              F +G D +         +    G++    L     RL KP+I  V G A+G G  + 
Sbjct: 60  -HDFTAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTIL 118

Query: 185 MVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEK 243
           +  DL  A + A+F      +G   + G  S ++ +  G  KA E+ F A+ + AE A +
Sbjct: 119 LQADLVFADNTALFQIPFVSLGLSPEGG-ASQLLVKQAGYHKAAELLFTAKKFNAETALQ 177

Query: 244 MGLVNTVVP 252
            GLVN +V 
Sbjct: 178 AGLVNEIVE 186

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score =  182 bits (465), Expect = 3e-57
 Identities = 43/190 (22%), Positives = 76/190 (40%), Gaps = 6/190 (3%)

Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
           S   +  I         +  IT +RP+  N      ++E ++  N     + V V++L G
Sbjct: 2   SLVTYQTIKVRFQ--ASVCYITFHRPEANNTINDTLIEECLQVLNQCETST-VTVVVLEG 58

Query: 124 KGTEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
              E FC G D Q +         +   +  + DL ++++  P   I+ V G    GG  
Sbjct: 59  LP-EVFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLG 117

Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
                D+ IA   A F  +    G + A      + R +G +KA  M  + +  + +EA 
Sbjct: 118 FVSATDIAIADQTASFSLSELLFGLYPAC-VLPFLIRRIGRQKAHYMTLMTKPISVQEAS 176

Query: 243 KMGLVNTVVP 252
           + GL++    
Sbjct: 177 EWGLIDAFDA 186

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score =  183 bits (467), Expect = 4e-57
 Identities = 64/230 (27%), Positives = 95/230 (41%), Gaps = 14/230 (6%)

Query: 44  HRIHGEVPSHDVVWR------IACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRP 97
           H  H      D+         +      +E       +   +GI  I ++ P +RN    
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSMGAGRRESEPRPTSARQL--DGIRNIVLSNPKKRNTLSL 59

Query: 98  HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY--ENFGRLNVL 155
             +K L        D + + VII++ +G   F SG D    T +   DY  E F   +  
Sbjct: 60  AMLKSLQSDILHDADSNDLKVIIISAEG-PVFSSGHDLKELTEEQGRDYHAEVFQTCS-- 116

Query: 156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSS 215
            + + IR  P PVIAMV G A   G  L   CD+ +A+D + F   G  VG F       
Sbjct: 117 KVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLF-CSTPGV 175

Query: 216 IMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTK 265
            ++R V  K A EM F     +A+EA   GL++ VVP +      M + +
Sbjct: 176 ALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIAR 225

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score =  182 bits (464), Expect = 6e-57
 Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 5/188 (2%)

Query: 65  GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124
           G+  T++  E    +G+A +T++ P  RN+F     ++L  A+    DD +V VI+LTG 
Sbjct: 3   GSMVTELHEEIR--DGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGA 60

Query: 125 GTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
              AFCSG    +               +   +Q     L  PVIA V G+A+G G  L 
Sbjct: 61  P-PAFCSGAQ--ISAAAETFAAPRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLA 117

Query: 185 MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKM 244
           +  D+ I A+   +     + G          + RLVG   A E+      ++A+ A + 
Sbjct: 118 LHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVET 177

Query: 245 GLVNTVVP 252
           GL N  +P
Sbjct: 178 GLANRCLP 185

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score =  181 bits (462), Expect = 9e-57
 Identities = 65/192 (33%), Positives = 89/192 (46%), Gaps = 12/192 (6%)

Query: 62  DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
            ++    + I   +A  E +  I + RP+RRNA     V+EL +A   A D S    I+L
Sbjct: 14  AQTQGPGSMIGITQA--EAVLTIELQRPERRNALNSQLVEELTQAIRKAGDGS-ARAIVL 70

Query: 122 TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
           TG+GT AFC+G D  L      ADY +       +L   +   P PV+  + G A+G G 
Sbjct: 71  TGQGT-AFCAGAD--LSGDAFAADYPDRLI----ELHKAMDASPMPVVGAINGPAIGAGL 123

Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEE 240
            L M CDL + A +A F     K G   D       +S LVG  +AR M   A   TAE 
Sbjct: 124 QLAMQCDLRVVAPDAFFQFPTSKYGLALDNW-SIRRLSSLVGHGRARAMLLSAEKLTAEI 182

Query: 241 AEKMGLVNTVVP 252
           A   G+ N +  
Sbjct: 183 ALHTGMANRIGT 194

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score =  180 bits (460), Expect = 2e-56
 Identities = 46/189 (24%), Positives = 73/189 (38%), Gaps = 6/189 (3%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
             +  + +      G+ +IT  R ++ NA  P   + L R + D      V  ++L G+G
Sbjct: 7   ARYPGLAFAWP-RPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEG 64

Query: 126 TEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
              F +GG    +       +          DL +     P+PV+A V   AVG G  L 
Sbjct: 65  -GVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALA 123

Query: 185 MVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEK 243
           +  D+ +            ++G          +   LVG  KA+    L    T EEAE+
Sbjct: 124 LAADIAVVGKGTRLLDGHLRLGVAAGDH-AVLLWPLLVGMAKAKYHLLLNEPLTGEEAER 182

Query: 244 MGLVNTVVP 252
           +GLV   V 
Sbjct: 183 LGLVALAVE 191

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score =  180 bits (459), Expect = 3e-56
 Identities = 57/190 (30%), Positives = 89/190 (46%), Gaps = 15/190 (7%)

Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
           S  +   ++ +    + +  +T+NRP  RNA          RA +DA++D  V V+I+TG
Sbjct: 4   SMADSPVLLVDTT--DRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTG 61

Query: 124 KGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
                FC+G D                     D+  +   + KPVI  + G AV GG  L
Sbjct: 62  AD-PVFCAGLDLKELGDTTELP----------DISPKWPDMTKPVIGAINGAAVTGGLEL 110

Query: 184 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEAE 242
            + CD+ IA++NA F  T  +VG     +G S+ + + VG   AR M     + +A++A 
Sbjct: 111 ALYCDILIASENAKFADTHARVGLM-PTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDAL 169

Query: 243 KMGLVNTVVP 252
           + GLV  VV 
Sbjct: 170 RAGLVTEVVA 179

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score =  180 bits (460), Expect = 6e-56
 Identities = 66/222 (29%), Positives = 92/222 (41%), Gaps = 13/222 (5%)

Query: 39  MNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPH 98
           M   +H   G + +           +      ++YE   G G+A IT NR DR NA+ P 
Sbjct: 1   MAHHHHHHMGTLEAQTQG--PGSMSAADAQDAVLYEATPG-GVAIITFNRADRLNAWGPD 57

Query: 99  TVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-------QALRTRDGYADYENFGR 151
                  A + A  D  + VI+LTG+G   FC+G                  A   N   
Sbjct: 58  LAAGFYAAIDRAEADPGIRVIVLTGRGR-GFCAGAYLGSADAAAGYDKTMAKAKDANLAD 116

Query: 152 LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAG 211
           L        +  L KPVIA + G  VG G    ++CD+  AA  A F     + G   A 
Sbjct: 117 LVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLI-AE 175

Query: 212 YGSS-IMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           +G S I+ RL     A ++    R + AEEA ++GLV  VV 
Sbjct: 176 FGISWILPRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVVT 217

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score =  179 bits (456), Expect = 8e-56
 Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 5/190 (2%)

Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
           S +   +++ E+     +  +T+NRP RRNA   + V +   A+++   D  +   ILTG
Sbjct: 4   SMSAARELLVERD--GPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTG 61

Query: 124 KGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
            G  A+C GGD +                 +    +    L KP+IA V G  +GGG  +
Sbjct: 62  AG-SAYCVGGDLSDGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEM 120

Query: 184 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEAE 242
               D+ ++ ++A FG    + G    G GS + + R +   KA EM       TA EA 
Sbjct: 121 LQQTDIRVSDEHATFGLPEVQRGLV-PGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAY 179

Query: 243 KMGLVNTVVP 252
             GLV  VVP
Sbjct: 180 HFGLVGHVVP 189

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score =  179 bits (457), Expect = 8e-56
 Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 3/188 (1%)

Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
            GI  + INR   +N+   + +K L +A +  + D  V  II+  +    FC+G D   R
Sbjct: 20  RGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKER 79

Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
            +   ++   F    +  +   I  LP P IA + G A+GGG  L + CD+ +AA +A  
Sbjct: 80  AKMSSSEVGPFVS-KIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKM 138

Query: 199 GQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFV 257
           G    K+     G G +  + R +G   A+E+ F AR    +EA+ +GL++ V+  +   
Sbjct: 139 GLVETKLAII-PGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEG 197

Query: 258 AYLMSLTK 265
                   
Sbjct: 198 DAAYRKAL 205

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score =  179 bits (456), Expect = 1e-55
 Identities = 60/194 (30%), Positives = 98/194 (50%), Gaps = 7/194 (3%)

Query: 62  DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
             +G    D + E+        +T+NRP RRNA     ++ ++ A++   +D  +   IL
Sbjct: 13  PANGESGPDALVEQR--GHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCIL 70

Query: 122 TGKGTEAFCSGGD--QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 179
           TG G   FC+G D   A +   G +  +     + +D  ++ RRL KP+IA V G A+ G
Sbjct: 71  TGAG-GYFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAG 129

Query: 180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTA 238
           G  +    D+ +AA++A FG +  K   +    GS++ + R +    A ++    R  TA
Sbjct: 130 GTEILQGTDIRVAAESAKFGISEAKWSLY-PMGGSAVRLVRQIPYTVACDLLLTGRHITA 188

Query: 239 EEAEKMGLVNTVVP 252
            EA++MGLV  VVP
Sbjct: 189 AEAKEMGLVGHVVP 202

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score =  178 bits (454), Expect = 2e-55
 Identities = 49/203 (24%), Positives = 80/203 (39%), Gaps = 12/203 (5%)

Query: 67  EFTDIIYEKAVGEGIAKI-TINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
            + DI+  K   +G   I    +    N+  P  ++E+  A + A  D    +++L+  G
Sbjct: 3   RYRDIVVRKQ--DGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSAVG 59

Query: 126 TEAFCSGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
              FC G D        T D   +        + +      +  KP+I  V G A+G G 
Sbjct: 60  -SVFCCGLDFIYFIRRLTDDRKRESTKMAEA-IRNFVNTFIQFKKPIIVAVNGPAIGLGA 117

Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEE 240
            +  +CD+  A + A F       G   D    + +  +++G   A EM    R  TA+E
Sbjct: 118 SILPLCDVVWANEKAWFQTPYTTFGQSPDGC-STVMFPKIMGGASANEMLLSGRKLTAQE 176

Query: 241 AEKMGLVNTVVPVSLFVAYLMSL 263
           A   GLV+ V     F   +M  
Sbjct: 177 ACGKGLVSQVFWPGTFTQEVMVR 199

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score =  177 bits (452), Expect = 3e-55
 Identities = 63/198 (31%), Positives = 97/198 (48%), Gaps = 6/198 (3%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
           +EF  I   +     +  I + RPD  NA     V E++ A      +  V VI+LTG+G
Sbjct: 2   SEFVSIAARQE--GAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRG 59

Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
             AF +G D     +D     E   +    D   ++  +  P+IA V G A+GGG  L +
Sbjct: 60  -RAFAAGADIQEMAKDDPIRLEWLNQFADWD---RLSIVKTPMIAAVNGLALGGGFELAL 115

Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMG 245
            CDL +A+  A FG     +G      G+  +++L+GPK+A E  +     +A+EAE++G
Sbjct: 116 SCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLG 175

Query: 246 LVNTVVPVSLFVAYLMSL 263
           +VN VV   L +   M L
Sbjct: 176 IVNRVVSPELLMEETMRL 193

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score =  176 bits (449), Expect = 9e-55
 Identities = 56/194 (28%), Positives = 87/194 (44%), Gaps = 15/194 (7%)

Query: 62  DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
           + +G    +++ E+   + I  ITINRP  +N+      + L  A +    D+ + V IL
Sbjct: 8   ELNGDTEPEVLVEQR--DRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGIL 65

Query: 122 TGKGTEAFCSGGD--QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 179
           TG G  +FC+G D     R  +   +    G           R   KP+IA V GYA+ G
Sbjct: 66  TGAG-GSFCAGMDLKAFARGENVVVEGRGLGF--------TERPPAKPLIAAVEGYALAG 116

Query: 180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTA 238
           G  L +  DL +AA ++ FG    K G   AG G  + +   +    A E+       +A
Sbjct: 117 GTELALATDLIVAARDSAFGIPEVKRGLV-AGGGGLLRLPERIPYAIAMELALTGDNLSA 175

Query: 239 EEAEKMGLVNTVVP 252
           E A  +G+VN +  
Sbjct: 176 ERAHALGMVNVLAE 189

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score =  176 bits (448), Expect = 1e-54
 Identities = 43/191 (22%), Positives = 68/191 (35%), Gaps = 5/191 (2%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
           E+ +    +  E+     +  I ++R  +RNAF    + +L  A  +          +L 
Sbjct: 6   EANSGPGRVTREQR--GHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLF 63

Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
             G E F +G D         A    +    V    V   R  KP++  V G     G  
Sbjct: 64  AHG-EHFTAGLDLMELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIE 122

Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEA 241
           L +  D+ +AA    F       G      GS++   R  G   A         + A+EA
Sbjct: 123 LMLNADIAVAARGTRFAHLEVLRGIP-PLGGSTVRFPRAAGWTDAMRYILTGDEFDADEA 181

Query: 242 EKMGLVNTVVP 252
            +M L+  VV 
Sbjct: 182 LRMRLLTEVVE 192

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score =  175 bits (447), Expect = 3e-54
 Identities = 59/197 (29%), Positives = 88/197 (44%), Gaps = 12/197 (6%)

Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
               F  I YE       A IT+NRPD  NA  PH + EL  A+++A +D  V ++++TG
Sbjct: 6   PVDSFDTIKYEVD--GHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTG 63

Query: 124 KGTEAFCSGGDQALRTRDGYADYENFGRL------NVLDLQVQIRRLPKPVIAMVAGYAV 177
            G  AFCSG D      DG   YE              +     R + KPV+  V G   
Sbjct: 64  TG-RAFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICC 122

Query: 178 GGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF-- 235
           G G       D+ IA++ A F      +G   AG     +SR++    A  M  + +   
Sbjct: 123 GAGMDWVTTTDIVIASEQATFFDPHVSIGLV-AGRELVRVSRVLPRSIALRMALMGKHER 181

Query: 236 YTAEEAEKMGLVNTVVP 252
            +A+ A ++GL++ +V 
Sbjct: 182 MSAQRAYELGLISEIVE 198

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score =  175 bits (447), Expect = 3e-54
 Identities = 59/206 (28%), Positives = 87/206 (42%), Gaps = 9/206 (4%)

Query: 62  DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
                 F  ++      +GI KI  NRP ++NA       E++RA   A  D S+ + +L
Sbjct: 19  YFQSMGFETLVVTSE--DGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVL 75

Query: 122 TGKGTEAFCSGGD---QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVG 178
           TG G + + SG D          G  +      + + +        PKP+IA+V G AVG
Sbjct: 76  TGNG-DYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVG 134

Query: 179 GGHVLHMVCDLTIAADNAIFGQTGPKVG-SFDAGYGSSIMSRLVGPKKAREMWFLARFYT 237
               L  + D   A+D A F      +G S +    S    +++ P KA EM    +  T
Sbjct: 135 ISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGC-SSYTFPKIMSPAKATEMLIFGKKLT 193

Query: 238 AEEAEKMGLVNTVVPVSLFVAYLMSL 263
           A EA   GLV  V P S F   + + 
Sbjct: 194 AGEACAQGLVTEVFPDSTFQKEVWTR 219

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score =  175 bits (445), Expect = 3e-54
 Identities = 69/200 (34%), Positives = 103/200 (51%), Gaps = 5/200 (2%)

Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
           S T +T I   +    G+  I ++RPD  NA       E++ A  D   D  +G I++TG
Sbjct: 4   SMTTYTTIATSR-PVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTG 62

Query: 124 KGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
               AF +G D A               L+  D    + ++ KP++A VAGYA+GGG  L
Sbjct: 63  SE-RAFAAGADIAEMVTLTPHQARERNLLSGWD---SLTQVRKPIVAAVAGYALGGGCEL 118

Query: 184 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEK 243
            M+CDL IAAD A FGQ    +G      G+  ++R VG  KA ++    R  TAEEAE+
Sbjct: 119 AMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAER 178

Query: 244 MGLVNTVVPVSLFVAYLMSL 263
           +GLV+ +VP +  +   +++
Sbjct: 179 VGLVSRIVPAADLLDEALAV 198

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score =  175 bits (447), Expect = 4e-54
 Identities = 51/206 (24%), Positives = 80/206 (38%), Gaps = 10/206 (4%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKIT-INRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
              + + DI+ +K   +G  +I    R   +NA     +KE++ A N A  D    +++ 
Sbjct: 17  RGSSTYRDIVVKKE--DGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADD-SKLVLF 73

Query: 122 TGKGTEAFCSGGD---QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVG 178
           +  G   FC G D        R+            + +      +  KP++  V G A+G
Sbjct: 74  SAAG-SVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIG 132

Query: 179 GGHVLHMVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYT 237
            G  +  +CDL  A + A F       G   D    S    +++G   A EM    R  T
Sbjct: 133 LGASILPLCDLVWANEKAWFQTPYTTFGQSPDGC-SSITFPKMMGKASANEMLIAGRKLT 191

Query: 238 AEEAEKMGLVNTVVPVSLFVAYLMSL 263
           A EA   GLV+ V     F   +M  
Sbjct: 192 AREACAKGLVSQVFLTGTFTQEVMIQ 217

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score =  174 bits (444), Expect = 8e-54
 Identities = 41/199 (20%), Positives = 77/199 (38%), Gaps = 8/199 (4%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
            + + ++ +      +  I +NRP +RNA     +  L     D      +  +++ G G
Sbjct: 13  ADPSTLVVDTV--GPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIG 68

Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
            + F +G D +        +     +     +  +I+    PVIA + G  +GGG  L  
Sbjct: 69  -DHFSAGLDLSELRERDATEGLVHSQT-WHRVFDKIQYCRVPVIAALKGAVIGGGLELAC 126

Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEAEKM 244
              + +A  +A +       G F  G G S+ + RL+G  +  +M    R Y+A E    
Sbjct: 127 AAHIRVAEASAYYALPEGSRGIF-VGGGGSVRLPRLIGVARMADMMLTGRVYSAAEGVVH 185

Query: 245 GLVNTVVPVSLFVAYLMSL 263
           G    ++         + L
Sbjct: 186 GFSQYLIENGSAYDKALEL 204

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score =  174 bits (443), Expect = 9e-54
 Identities = 46/194 (23%), Positives = 76/194 (39%), Gaps = 6/194 (3%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
            S     D     A G  +A++T+N P  RNA     V +L +   DA  D +V V++L 
Sbjct: 3   GSMDALVDYAGPAATGGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLA 62

Query: 123 GKGTEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQV---QIRRLPKPVIAMVAGYAVG 178
             G   FC+G D     +    +   +       ++      I     PVIA + G+   
Sbjct: 63  HTG-GTFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRA 121

Query: 179 GGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTA 238
           GG  L   CD+ +A   + F  T  ++G       S  +   +  + A   +     + A
Sbjct: 122 GGFGLVGACDIAVAGPRSSFALTEARIGVA-PAIISLTLLPKLSARAAARYYLTGEKFDA 180

Query: 239 EEAEKMGLVNTVVP 252
             AE++GL+     
Sbjct: 181 RRAEEIGLITMAAE 194

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score =  171 bits (436), Expect = 7e-53
 Identities = 69/198 (34%), Positives = 103/198 (52%), Gaps = 7/198 (3%)

Query: 68  FTDIIYEKAVGE-GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
           F  II EK      +  I +NRP   NA     ++EL +A     +D +VG I+LTG G 
Sbjct: 3   FQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTG-GE 61

Query: 127 EAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
           +AF +G D + ++ R  + D  +   L+  D    I R+ KPVIA V GYA+GGG  L M
Sbjct: 62  KAFAAGADIKEMQNRT-FQDCYSGKFLSHWD---HITRIKKPVIAAVNGYALGGGCELAM 117

Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMG 245
           +CD+  A + A FGQ    +G+     G+  ++R VG   A EM       +A++A++ G
Sbjct: 118 MCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAG 177

Query: 246 LVNTVVPVSLFVAYLMSL 263
           LV+ + PV   V   +  
Sbjct: 178 LVSKIFPVETLVEEAIQC 195

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score =  171 bits (435), Expect = 1e-52
 Identities = 49/201 (24%), Positives = 81/201 (40%), Gaps = 12/201 (5%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
            +  +         +A I  N   + NA     + +L++A +D      +  IIL     
Sbjct: 2   SYQYVNVVTI--NKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSG 58

Query: 127 E-AFCSGGDQALRTRDGYAD--YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
              F +G D       G     Y++  R     +   I++ PKP+I+MV G   GG   +
Sbjct: 59  SKVFSAGHDIHELPSGGRDPLSYDDPLR----QITRMIQKFPKPIISMVEGSVWGGAFEM 114

Query: 184 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEAE 242
            M  DL IAA  + F  T   +G           ++R  G    +E+ F A   TA+ A 
Sbjct: 115 IMSSDLIIAASTSTFSMTPVNLGVP-YNLVGIHNLTRDAGFHIVKELIFTASPITAQRAL 173

Query: 243 KMGLVNTVVPVSLFVAYLMSL 263
            +G++N VV V     + + +
Sbjct: 174 AVGILNHVVEVEELEDFTLQM 194

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score =  171 bits (436), Expect = 1e-52
 Identities = 49/204 (24%), Positives = 78/204 (38%), Gaps = 10/204 (4%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
             ++ +        G+A+I ++ P   N      ++EL        DDSSV VI+ +   
Sbjct: 6   DAYSTLRVSSE--HGVARIILDNPPV-NVIGATMMRELRTVLTTLADDSSVRVIVFSSAD 62

Query: 126 TEAFCSGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
            E F +  D    + +      A            +   IR  P+  I  +AG A GGG 
Sbjct: 63  PEFFLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGA 122

Query: 182 VLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAE 239
                 D+  AA + A  GQ    +G    G G +  +   VG  +A E+   A  + AE
Sbjct: 123 EFVAAADMAFAAAETAGLGQIEALMGII-PGGGGTQYLRGRVGRNRALEVVLTADLFDAE 181

Query: 240 EAEKMGLVNTVVPVSLFVAYLMSL 263
            A   G +N  +P      Y+  +
Sbjct: 182 TAASYGWINRALPADELDEYVDRV 205

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score =  170 bits (433), Expect = 2e-52
 Identities = 58/183 (31%), Positives = 84/183 (45%), Gaps = 8/183 (4%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           +  EKA    +  + +NRP  RNA    T   L+ AF +   D    V +L G     FC
Sbjct: 13  VRVEKA--GPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDN-GTFC 69

Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
           +G D      D   +    G   +        RL KPVIA ++G+AV GG  L + CDL 
Sbjct: 70  AGADLKAMGTDRGNELHPHGPGPMGP---SRLRLSKPVIAAISGHAVAGGIELALWCDLR 126

Query: 191 IAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEAEKMGLVNT 249
           +  ++A+ G    + G      G +I + RL+G  +A ++    R   A EA  +GLVN 
Sbjct: 127 VVEEDAVLGVFCRRWGVP-LIDGGTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNR 185

Query: 250 VVP 252
           VV 
Sbjct: 186 VVA 188

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score =  170 bits (434), Expect = 3e-52
 Identities = 67/217 (30%), Positives = 98/217 (45%), Gaps = 6/217 (2%)

Query: 47  HGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRA 106
           H        +           +  I+ E+   + +  IT+NRP   NA     + E+  A
Sbjct: 3   HHHHHHMGTLEAQTQGPGSMTYETILVERD--QRVGIITLNRPQALNALNSQVMNEVTSA 60

Query: 107 FNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPK 166
             +  DD  +G II+TG   +AF +G D        +AD              ++  +  
Sbjct: 61  ATELDDDPDIGAIIITGSA-KAFAAGADIKEMADLTFADAFTADFFATWG---KLAAVRT 116

Query: 167 PVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226
           P IA VAGYA+GGG  L M+CD+ IAAD A FGQ   K+G      GS  ++R +G  KA
Sbjct: 117 PTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKA 176

Query: 227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSL 263
            ++    R   A EAE+ GLV+ VVP    +    + 
Sbjct: 177 MDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARAT 213

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score =  169 bits (432), Expect = 3e-52
 Identities = 55/183 (30%), Positives = 81/183 (44%), Gaps = 12/183 (6%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           ++ E+   + +  ITINRPD RNA      + L  A +     + + V I+TG G   FC
Sbjct: 9   VLIEQR--DRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAG-GNFC 65

Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
           +G D            E                  KP+IA V G+A+ GG  L + CDL 
Sbjct: 66  AGMDLKAFVSGEAVLSERGLGFT-------NVPPRKPIIAAVEGFALAGGTELVLSCDLV 118

Query: 191 IAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEAEKMGLVNT 249
           +A  +A FG    K G   AG G  + +   +  + A E+      +TAE+A K G +N 
Sbjct: 119 VAGRSAKFGIPEVKRGLV-AGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINR 177

Query: 250 VVP 252
           +V 
Sbjct: 178 LVD 180

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score =  169 bits (432), Expect = 4e-52
 Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 7/192 (3%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
              T+   +   K   +GIA+I ++   + N++     KE   A +D R D  + V+I+ 
Sbjct: 3   AVETKKQYLTVFKE--DGIAEIHLHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVM 59

Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
               + F +G D              F      +   +I R P+  IA + G+ VGGG  
Sbjct: 60  SDVPKFFSAGADINFLRSADPRFKTQFCLF-CNETLDKIARSPQVYIACLEGHTVGGGLE 118

Query: 183 LHMVCDLTIAADNAI-FGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEE 240
           + + CDL    D A   G     +G   AG G +  ++RL+G  +A +M       T +E
Sbjct: 119 MALACDLRFMGDEAGKIGLPEVSLGVL-AGTGGTQRLARLIGYSRALDMNITGETITPQE 177

Query: 241 AEKMGLVNTVVP 252
           A ++GLVN V P
Sbjct: 178 ALEIGLVNRVFP 189

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score =  167 bits (425), Expect = 6e-51
 Identities = 43/190 (22%), Positives = 74/190 (38%), Gaps = 6/190 (3%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
             +  I         +   T N P   N   P  V++L+    +    ++  V+I     
Sbjct: 5   ASYETIKARLD--GTVLSATFNAPPM-NLIGPEVVRDLVALLEELAHPTAPRVVIFDSAD 61

Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNVLDLQV--QIRRLPKPVIAMVAGYAVGGGHVL 183
            + F    D            +  G  +     +  ++ +LP   IA + G A G G   
Sbjct: 62  ADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEF 121

Query: 184 HMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
            + CD+  A+ +NAI GQ    +G+         ++RL+G  +A E    +  + A+ AE
Sbjct: 122 LLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAE 181

Query: 243 KMGLVNTVVP 252
           + G VN  VP
Sbjct: 182 RYGWVNRAVP 191

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score =  166 bits (423), Expect = 8e-51
 Identities = 49/202 (24%), Positives = 82/202 (40%), Gaps = 8/202 (3%)

Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
           S      +       + IA  T+N     NA     + ++    +    D ++ V+++ G
Sbjct: 1   SNAMLKFLSVRVE--DHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHG 57

Query: 124 KGTEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
           +G   F +G D +   +           +L       ++ +  KPVIA + G A+GGG  
Sbjct: 58  EG-RFFSAGADIKEFTSVTEAKQATELAQL-GQVTFERVEKCSKPVIAAIHGAALGGGLE 115

Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEA 241
             M C +  A ++A  G     +G    G+  +  + R VG  KA EM   +   T  EA
Sbjct: 116 FAMSCHMRFATESAKLGLPELTLGLI-PGFAGTQRLPRYVGKAKACEMMLTSTPITGAEA 174

Query: 242 EKMGLVNTVVPVSLFVAYLMSL 263
            K GLVN V     F+   + +
Sbjct: 175 LKWGLVNGVFAEETFLDDTLKV 196

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score =  165 bits (420), Expect = 3e-50
 Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 5/200 (2%)

Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
            G+    +       +G+A + ++RP   NA      +E++ A ++      +G ++L G
Sbjct: 19  PGSMNEFVSVVAD--QGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFG 75

Query: 124 KGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
            G E F +G D          + +   R   L+    +  +PKP +A V GYA+G G  L
Sbjct: 76  -GHEIFSAGDDMPELRTLNAPEADTAAR-VRLEAIDAVAAIPKPTVAAVTGYALGAGLTL 133

Query: 184 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEK 243
            +  D  ++ DN  FG T    G    G G   ++R+VG  +A+E+ F  RF+ AEEA  
Sbjct: 134 ALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALA 193

Query: 244 MGLVNTVVPVSLFVAYLMSL 263
           +GL++ +V         ++ 
Sbjct: 194 LGLIDDMVAPDDVYDSAVAW 213

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score =  165 bits (419), Expect = 4e-50
 Identities = 30/198 (15%), Positives = 57/198 (28%), Gaps = 16/198 (8%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
           +   I Y          I +  PD  NA        L      A  +  V   I+   G 
Sbjct: 7   QNEKISYRIE--GPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSG- 63

Query: 127 EAFCSGGD----------QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYA 176
             F SG D             +     + + +      + +     +  K +I  + G A
Sbjct: 64  RFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPA 123

Query: 177 VGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSS-IMSRLVGPKKAREMWFLAR 234
           +G    L  +CD+  +  D          +G      G++  +    G     E     +
Sbjct: 124 IGLSAALVALCDIVYSINDKVYLLYPFANLG-LITEGGTTVSLPLKFGTNTTYECLMFNK 182

Query: 235 FYTAEEAEKMGLVNTVVP 252
            +  +   + G ++    
Sbjct: 183 PFKYDIMCENGFISKNFN 200

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score =  164 bits (417), Expect = 5e-50
 Identities = 42/185 (22%), Positives = 79/185 (42%), Gaps = 6/185 (3%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           ++ E   G G+A +    P   N+     + EL+ +     +D S   +ILT      F 
Sbjct: 5   VLVEPDAGAGVAVMKFKNP-PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFS 63

Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
           +G D         A Y  + +  V +L +++ +    +++ + G    GG ++ + CD  
Sbjct: 64  AGLDLTEMCGRSPAHYAGYWKA-VQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYR 122

Query: 191 IAADNAIF--GQTGPKVGSFDAGY-GSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLV 247
           I ADN  +  G    ++G   A +     +   +G + A     L   +   EA ++G+V
Sbjct: 123 ILADNPRYCIGLNETQLGII-APFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIV 181

Query: 248 NTVVP 252
           + VVP
Sbjct: 182 DQVVP 186

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score =  168 bits (426), Expect = 2e-49
 Identities = 58/213 (27%), Positives = 89/213 (41%), Gaps = 26/213 (12%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
               E   +  E+   +G+A++T+ R DR NA     V ++  A + A  D  V V +L 
Sbjct: 161 TGEVEMEAVHLERR--DGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLR 218

Query: 123 G--------KGTEAFCSGGD-------------QALRTRDGYADYENFGRLNVLDLQV-- 159
           G        +G   F +G +               +R   GY      G L   D     
Sbjct: 219 GGVMSHPRYRGKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWW 278

Query: 160 QIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR 219
              R+ KP +A V G+A+GGG  L +V D  +A+ +A F     K G    G  +  + R
Sbjct: 279 HSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGII-PGAANLRLGR 337

Query: 220 LVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
             GP+ +R++    R   A+E E   LV+ VV 
Sbjct: 338 FAGPRVSRQVILEGRRIWAKEPEARLLVDEVVE 370

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score =  160 bits (408), Expect = 6e-49
 Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 6/182 (3%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           + Y     + I  I ++   + N   P   + L  A + A  D+ VG +++ G     F 
Sbjct: 7   VTYTHD--DAIGVIRMDDG-KVNVLGPTMQQALNEAIDAADRDN-VGALVIAGNH-RVFS 61

Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
            G D  + T        +  R    +L  ++   PKPV+    G+A+  G  L    D  
Sbjct: 62  GGFDLKVLTSGEAKPAIDMLR-GGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHR 120

Query: 191 IAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250
           +AA           +G         ++   + P   ++   LA+ +  E A   G ++ +
Sbjct: 121 VAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEI 180

Query: 251 VP 252
             
Sbjct: 181 SL 182

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score =  161 bits (411), Expect = 7e-49
 Identities = 54/188 (28%), Positives = 82/188 (43%), Gaps = 14/188 (7%)

Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-- 134
             + +  + +NRP++RNA      +EL+  F     DS    ++++G G + F SG D  
Sbjct: 10  AQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAG-KMFTSGIDLM 68

Query: 135 -----QALRTRDGYADYENFGRLNVLDLQV---QIRRLPKPVIAMVAGYAVGGGHVLHMV 186
                      D  A    + R  +   Q     I + PKPVIA + G  +GGG  L   
Sbjct: 69  DMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISA 128

Query: 187 CDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPK-KAREMWFLARFYTAEEAEKM 244
           CD+     +A F      VG   D G     + +++G +    E+ F AR   A+EA   
Sbjct: 129 CDIRYCTQDAFFQVKEVDVGLAADVG-TLQRLPKVIGNRSLVNELTFTARKMMADEALDS 187

Query: 245 GLVNTVVP 252
           GLV+ V P
Sbjct: 188 GLVSRVFP 195

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score =  154 bits (392), Expect = 8e-46
 Identities = 46/241 (19%), Positives = 82/241 (34%), Gaps = 19/241 (7%)

Query: 40  NDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDR----RNAF 95
           +  +H    +  S   V +     +      II E      +  I ++        R  F
Sbjct: 4   SHHHHHHSQDPNSMSAV-QPFIRTNIGSTLRIIEEPQ--RDVYWIHMHADLAINPGRACF 60

Query: 96  RPHTVKELIRAFN----DARDDSSVGVIILTGKGTEAFCSGGD----QALRTRDGYADYE 147
               V ++                +   ++    ++ F  GGD      L      A   
Sbjct: 61  STRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLL 120

Query: 148 NFGR--LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV 205
           ++ +  +  +             IA+V G A+GGG    + C   IA +  + G      
Sbjct: 121 DYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLF 180

Query: 206 GSFDAGYG-SSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLT 264
             F  G G  S M + +    A+++      Y+AE+   MGLV+ VVP    VA +  + 
Sbjct: 181 DLF-PGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVI 239

Query: 265 K 265
           +
Sbjct: 240 R 240

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score =  150 bits (382), Expect = 4e-45
 Identities = 39/183 (21%), Positives = 66/183 (36%), Gaps = 9/183 (4%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           + Y     +G+A +T+N   + NA  P  +     A + A  D    ++I+TG+      
Sbjct: 8   VSYHLD--DGVATLTLNNG-KVNAISPDVIIAFNAALDQAEKD--RAIVIVTGQPG-ILS 61

Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
            G D  + T    A      + +   L  ++   P P+I    G+AV  G  L +  D  
Sbjct: 62  GGYDLKVMTSSAEAAINLVAQGS--TLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYR 119

Query: 191 IA-ADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNT 249
           I  A     G    ++G      G  +    +           A  +  E A   G ++ 
Sbjct: 120 IGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAGFLDK 179

Query: 250 VVP 252
           VV 
Sbjct: 180 VVS 182

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score =  143 bits (362), Expect = 1e-39
 Identities = 41/225 (18%), Positives = 72/225 (32%), Gaps = 21/225 (9%)

Query: 58  RIACDESGTEFTDIIYEKAVGEGIAKITINRPDRR----------NAFRPHTVKELIRAF 107
            +      +++            +A + I+  +            N++      EL  A 
Sbjct: 10  PVDYRTDPSQYKHWKLS--FNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAI 67

Query: 108 NDAR-DDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRL---NVLDLQVQIRR 163
              R +   V  ++LT      FCSG +  +     +A   NF +        L+   R 
Sbjct: 68  QRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRH 127

Query: 164 LPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD--NAIFGQTGPKVGSFDAGYGSS---IMS 218
                +A V G   GGG+ L + CD     D  ++        +     G G        
Sbjct: 128 SGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDK 187

Query: 219 RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSL 263
           R V   +A     +      E A+   LV+ VV  + F   + + 
Sbjct: 188 RKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQAR 232

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 33/217 (15%), Positives = 62/217 (28%), Gaps = 27/217 (12%)

Query: 62  DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKE---------LIRAFNDA-- 110
            E G  +  +       + IA  T   P          +             R F+DA  
Sbjct: 259 REDGLTYKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAIL 318

Query: 111 ---RDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKP 167
               ++ +VG  +   +G        D +L     +  +       +     +I    + 
Sbjct: 319 SMRTNELAVGTWVFRTEGDARHLLAADASLMQHKDHW-FVRETIGLLRRTLARIDVSSRS 377

Query: 168 VIAMV-AGYAVGGGHV-LHMVCDLTIAADNAIFGQTGPKVGSFDAGYG--------SSIM 217
           + A++  G    G    L    D T  A         P +   +  +G        S + 
Sbjct: 378 LFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGLYPMVTHQSRLA 437

Query: 218 SRLVGPKKAREMWF--LARFYTAEEAEKMGLVNTVVP 252
            R     +  +     + +     EAE++GLV     
Sbjct: 438 RRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPD 474

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score = 99.7 bits (249), Expect = 8e-24
 Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 13/190 (6%)

Query: 69  TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEA 128
              + E   G+G+A IT+  P   N+     +  L   + +A   + V  I++TG     
Sbjct: 7   GKTVMEV-GGDGVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAK-GR 63

Query: 129 FCSGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
           F  G D      ++  +       +  ++   +   +    KP +A + G A+GGG  L 
Sbjct: 64  FSGGFDISGFGEMQKGNVKEPKAGYISID--IITDLLEAARKPSVAAIDGLALGGGLELA 121

Query: 185 MVCDLTIAADNAIFGQTGP--KVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
           M C   I+A  A  G   P  ++G      G+  + RLVG  KA EM   ++   AEE  
Sbjct: 122 MACHARISAPAAQLGL--PELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGH 179

Query: 243 KMGLVNTVVP 252
            +GL++ VVP
Sbjct: 180 SLGLIDAVVP 189

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score = 99.2 bits (248), Expect = 9e-24
 Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 14/192 (7%)

Query: 75  KAVGEGIAKITINRPDRR-NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGG 133
            A+  GI ++  +      N F   T+ EL +A +  + D+SV  +I++    + F  G 
Sbjct: 11  TALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGK-DVFIVGA 69

Query: 134 D----QALRTRDGYADYENFGRLN-VLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCD 188
           D                      N +         L  P +A + G A+GGG  + +  D
Sbjct: 70  DITEFVENFKLPDAELIAGNLEANKIFS---DFEDLNVPTVAAINGIALGGGLEMCLAAD 126

Query: 189 LTIAADNAIFGQTGP--KVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
             + AD+A  G   P  K+G +    G+  + RL+G   A E     +   AE+A K+  
Sbjct: 127 FRVMADSAKIGL--PEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSA 184

Query: 247 VNTVVPVSLFVA 258
           V+ VV      A
Sbjct: 185 VDAVVTADKLGA 196

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score = 91.2 bits (227), Expect = 5e-21
 Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 21/196 (10%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
              + +     +   +A I +  P   NA  P  ++E+      A  D +V  I++ G  
Sbjct: 16  PRGSHMAEYLRLPHSLAMIRLCNP-PVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGAN 74

Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLN----VLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
              FC+G           AD   F        +  L  +I+R  KPV+A + G A+GGG 
Sbjct: 75  -GNFCAG-----------ADIHGFSAFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGL 122

Query: 182 VLHMVCDLTIAADNAIFGQTGP--KVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE 239
            L + C   IA   A  G   P   +G      G+ ++ R+VG   A ++    ++ +A+
Sbjct: 123 ELALGCHYRIANAKARVGL--PEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSAD 180

Query: 240 EAEKMGLVNTVVPVSL 255
           EA ++G+++ VV    
Sbjct: 181 EALRLGILDAVVKSDP 196

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363

 Score = 83.1 bits (206), Expect = 2e-18
 Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 14/152 (9%)

Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-QALR 138
               IT+NRP   NA   + ++++         D    +II+ G G +AFC+GGD + + 
Sbjct: 15  CTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVIS 74

Query: 139 --TRDGYADYENFGR----LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
              +        F R    LN       +    KP +A++ G  +GGG  L +     +A
Sbjct: 75  EAEKAKQKIAPVFFREEYMLNNA-----VGSCQKPYVALIHGITMGGGVGLSVHGQFRVA 129

Query: 193 ADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGP 223
            +  +F      +G F D G G   + RL G 
Sbjct: 130 TEKCLFAMPETAIGLFPDVG-GGYFLPRLQGK 160

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407

 Score = 81.7 bits (202), Expect = 5e-18
 Identities = 41/203 (20%), Positives = 78/203 (38%), Gaps = 16/203 (7%)

Query: 32  IGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEK---AVGEGIAKITINR 88
           +G ++   + S  R +     H          S     +++++    A G+ +  +T+N 
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGHMTNLVDKAAHSFAT-QNVVFQTLATASGKLVGVVTLNV 59

Query: 89  PDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD------QALRTRDG 142
               NA     V+ +    N  + D  +  ++L G G +AFC+GGD       ++  +  
Sbjct: 60  EKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQ 119

Query: 143 YADY--ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200
             +     F     LD    +    KPV+    G  +GGG  L       +  + +    
Sbjct: 120 VTEVAKVFFEEEYRLDY--LLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAM 177

Query: 201 TGPKVGSF-DAGYGSSIMSRLVG 222
               +G + D G GS  ++R+ G
Sbjct: 178 PEVTIGLYPDVG-GSYFLNRMPG 199

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	100.0
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	100.0
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	100.0
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	100.0
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	100.0
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	100.0
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	100.0
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	100.0
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	100.0
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	100.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	100.0
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	100.0
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	100.0
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	100.0
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	100.0
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	100.0
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	100.0
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	100.0
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	100.0
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	100.0
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	100.0
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	100.0
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	100.0
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	100.0
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	100.0
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	100.0
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	100.0
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	100.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	100.0
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	100.0
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	100.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	100.0
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	100.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.89
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.85
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.84
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.67
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	99.64
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	99.5
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	99.47
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	99.2
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	98.93
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	98.88
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	98.83
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	98.74
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	98.71
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	98.45
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	98.43
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	98.24
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	98.09
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	98.04
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	97.93
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	97.73
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	97.66
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	97.6
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	97.58
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	97.47
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	97.37
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	97.17
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	97.11
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	96.99
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	96.89
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	96.76
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	96.42
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	96.22
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	96.11
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	95.53
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	95.37
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	94.97
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	94.33
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	87.91

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=4.3e-51  Score=358.92  Aligned_cols=194  Identities=30%  Similarity=0.411  Sum_probs=179.1

Q ss_pred             EEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhh
Q 024304           71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG  150 (269)
Q Consensus        71 v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~  150 (269)
                      |++|+  ++||++||||||+++|+||.+|+.+|.++++++++|+++++|||+|.| ++||+|+|++++.........  .
T Consensus         2 vl~E~--~dgVa~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~--~   76 (254)
T 3hrx_A            2 VLKER--QDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAG-RAFSAGQDLTEFGDRKPDYEA--H   76 (254)
T ss_dssp             EEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCGGGTTTSCCCHHH--H
T ss_pred             eEEEE--ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCC-CCcccCccHHHhcccchhhHH--H
Confidence            67888  999999999999999999999999999999999999999999999998 699999999987643322211  1


Q ss_pred             hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHH
Q 024304          151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW  230 (269)
Q Consensus       151 ~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~  230 (269)
                      ...+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.++|++|+
T Consensus        77 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~ll  156 (254)
T 3hrx_A           77 LRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELL  156 (254)
T ss_dssp             THHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHh
Confidence            22356778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          231 FLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       231 ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      +||++++|+||+++||||+|+|++++++++.+++++|+.
T Consensus       157 ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~  195 (254)
T 3hrx_A          157 LLSPRLSAEEALALGLVHRVVPAEKLMEEALSLAKELAQ  195 (254)
T ss_dssp             HHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHT
T ss_pred             hcCcccCHHHHHHCCCeEEecCcHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999998863

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=1e-50  Score=357.25  Aligned_cols=197  Identities=28%  Similarity=0.470  Sum_probs=180.5

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~  146 (269)
                      .+.+|.+++  +++|++||||||+++|+||.+|+.+|.+++++++.|+++++|||||.| ++||+|+|++++.....   
T Consensus         3 ~ms~l~ve~--~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~---   76 (258)
T 4fzw_A            3 SMSELIVSR--QQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNA-RFFAAGADLNEMAEKDL---   76 (258)
T ss_dssp             --CEEEEEE--ETTEEEEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCS-SEEEECBCHHHHHTCCH---
T ss_pred             CCCcEEEEE--ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCC-CceeCCCchhhhccchh---
Confidence            456799999  999999999999999999999999999999999999999999999998 79999999998754321   


Q ss_pred             hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA  226 (269)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a  226 (269)
                      ..........++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..++
T Consensus        77 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A  156 (258)
T 4fzw_A           77 AATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLA  156 (258)
T ss_dssp             HHHHTCSHHHHHHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred             hhHHHhHHHHHHHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHHHH
Confidence            11112235577889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      ++|++||+.++|+||+++||||+|+|++++++++.+++++|+.
T Consensus       157 ~~llltg~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~  199 (258)
T 4fzw_A          157 SKMVLSGESITAQQAQQAGLVSDVFPSDLTLEYALQLASKMAR  199 (258)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCcCcHHHHHHCCCeeEEeCchHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999873

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=2e-50  Score=358.25  Aligned_cols=202  Identities=28%  Similarity=0.414  Sum_probs=176.4

Q ss_pred             CCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc
Q 024304           65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA  144 (269)
Q Consensus        65 ~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~  144 (269)
                      +.-++.|+++.  ++||++||||||+++|+||.+|+.+|.++++++++|+++++|||||.| ++||+|+|++++......
T Consensus        11 GsM~e~il~~~--~~gVa~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G-~~FcaG~Dl~~~~~~~~~   87 (274)
T 4fzw_C           11 GSMMEFILSHV--EKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAG-RGFCAGQDLNDRNVDPTG   87 (274)
T ss_dssp             -----CEEEEE--ETTEEEEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCBCCC--------
T ss_pred             ccccccEEEEE--ECCEEEEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceeCCcChHhhhccccc
Confidence            44556788888  999999999999999999999999999999999999999999999998 799999999986432211


Q ss_pred             ---chhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhh
Q 024304          145 ---DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV  221 (269)
Q Consensus       145 ---~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~  221 (269)
                         .........+..+...+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++
T Consensus        88 ~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v  167 (274)
T 4fzw_C           88 PAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVA  167 (274)
T ss_dssp             -CCCHHHHHHHTHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHh
Confidence               11111122356678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          222 GPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       222 G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      |..++++|++||++++|+||+++||||+|+|.+++.+++.++|++++.
T Consensus       168 G~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~  215 (274)
T 4fzw_C          168 GRARAMGLALLGNQLSAEQAHEWGMIWQVVDDETLADTAQQLARHLAT  215 (274)
T ss_dssp             CHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHhCCcCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999873

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=100.00  E-value=1.7e-49  Score=350.84  Aligned_cols=201  Identities=29%  Similarity=0.489  Sum_probs=181.9

Q ss_pred             CCCcceEEEE-EEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc
Q 024304           65 GTEFTDIIYE-KAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY  143 (269)
Q Consensus        65 ~~~~~~v~~~-~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~  143 (269)
                      +.+|+.|.++ .  +++|++|+||||+++|+||.+|+.+|.++++++++|+++++|||+|.|+++||+|+|++++.....
T Consensus         4 mm~~~~v~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~   81 (265)
T 3kqf_A            4 MLQLQNISVDYA--TPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNE   81 (265)
T ss_dssp             ---CCSEEEECC--STTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCH
T ss_pred             cccCCeEEEEEe--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccCH
Confidence            4467889999 7  999999999999999999999999999999999999999999999999779999999998764321


Q ss_pred             cchhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCH
Q 024304          144 ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP  223 (269)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~  223 (269)
                      .. ..........++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        82 ~~-~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  160 (265)
T 3kqf_A           82 EQ-VRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGV  160 (265)
T ss_dssp             HH-HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCH
T ss_pred             HH-HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCH
Confidence            11 11112235677889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          224 KKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       224 ~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      .++++|+++|+.++|+||+++||||+|+|.+++.+.+.++|++|+
T Consensus       161 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  205 (265)
T 3kqf_A          161 GRAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIA  205 (265)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999986

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=100.00  E-value=5.9e-50  Score=355.44  Aligned_cols=203  Identities=63%  Similarity=1.018  Sum_probs=178.9

Q ss_pred             CCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEc-----CCCCceeccccccccc
Q 024304           65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG-----KGTEAFCSGGDQALRT  139 (269)
Q Consensus        65 ~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g-----~g~~~Fc~G~Dl~~~~  139 (269)
                      ...|+.|.+++  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||||     .|+++||+|+|++++.
T Consensus         6 ~~~~~~v~~~~--~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~   83 (275)
T 4eml_A            6 AKHYDDILYYK--AGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRG   83 (275)
T ss_dssp             EEECSSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC---
T ss_pred             ccCCceEEEEE--ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhh
Confidence            34577899999  9999999999999999999999999999999999999999999999     8867999999999875


Q ss_pred             cCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHh
Q 024304          140 RDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR  219 (269)
Q Consensus       140 ~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r  219 (269)
                      ..............+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r  163 (275)
T 4eml_A           84 EGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLAR  163 (275)
T ss_dssp             -----------CCCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHH
T ss_pred             cccccchhhHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHH
Confidence            42221111122223567788999999999999999999999999999999999999999999999999999888999999


Q ss_pred             hhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          220 LVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       220 ~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      ++|..++++|+++|+.++|+||+++||||+|+|.+++.+++.++|++|+.
T Consensus       164 ~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~  213 (275)
T 4eml_A          164 IVGQKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGIQWAKEILS  213 (275)
T ss_dssp             HHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHT
T ss_pred             HhHHHHHHHHHHhCCCcCHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999873

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=100.00  E-value=7.2e-49  Score=346.04  Aligned_cols=198  Identities=26%  Similarity=0.327  Sum_probs=179.6

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~  147 (269)
                      ++.|.+++  +++|++|+||||++ |+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.........
T Consensus         5 ~~~v~~~~--~~~v~~itlnrp~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~   80 (261)
T 3pea_A            5 LKFLSVRV--EDHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEG-RFFSAGADIKEFTSVTEAKQA   80 (261)
T ss_dssp             CSSEEEEE--ETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCGGGSSTTCCHHHH
T ss_pred             ccceEEEE--ECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceeCCcCHHHHhhcCchhHH
Confidence            46789998  99999999999999 999999999999999999999999999999999 799999999997643221111


Q ss_pred             hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHH
Q 024304          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR  227 (269)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~  227 (269)
                      .........++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+++
T Consensus        81 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~  160 (261)
T 3pea_A           81 TELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKAC  160 (261)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHH
Confidence            11112234577889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          228 EMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       228 ~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      +|+++|+.++|+||+++||||+|+|.+++.+++.++|++|+.
T Consensus       161 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~  202 (261)
T 3pea_A          161 EMMLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAG  202 (261)
T ss_dssp             HHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999863

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=100.00  E-value=3.7e-49  Score=358.49  Aligned_cols=215  Identities=47%  Similarity=0.799  Sum_probs=185.7

Q ss_pred             CcchhhhhccCCCCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCC-----
Q 024304           53 HDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE-----  127 (269)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~-----  127 (269)
                      .+..|....  ...+|++|.+++.++++|++|+||||+++|+||.+|+.+|.++|+.++.|+++++|||||.|++     
T Consensus        41 ~p~~w~~~~--~~~~~~~i~~~~~~~~gVa~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~  118 (334)
T 3t8b_A           41 DAKAWRLVD--GFDDLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGG  118 (334)
T ss_dssp             CGGGEEECT--TCTTCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCC
T ss_pred             Ccccccccc--ccCCCceEEEEEeccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCC
Confidence            446787322  1346889999982239999999999999999999999999999999999999999999999965     


Q ss_pred             -ceeccccccccccCCcc--c--------hhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEe-CC
Q 024304          128 -AFCSGGDQALRTRDGYA--D--------YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DN  195 (269)
Q Consensus       128 -~Fc~G~Dl~~~~~~~~~--~--------~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~-~~  195 (269)
                       +||+|+|++++......  .        ........+..++..|..+||||||+|||+|+|||++|+++||+|||+ ++
T Consensus       119 ~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~  198 (334)
T 3t8b_A          119 WAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREY  198 (334)
T ss_dssp             CEEECCSCTTTTC----------------------CCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTT
T ss_pred             CcccCCCCHHHhhcccccccccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCC
Confidence             89999999886432110  0        000112235577888999999999999999999999999999999999 99


Q ss_pred             ceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          196 AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       196 a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      ++|++||+++|++|++|++++|+|++|..+|++|+++|+.|+|+||+++||||+|||.++|++++.++|++|+.
T Consensus       199 A~f~~pe~~lGl~p~~gg~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~ia~  272 (334)
T 3t8b_A          199 ARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINA  272 (334)
T ss_dssp             CEEECCCTTCSSSSCCSCHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHT
T ss_pred             cEEECcccccCCCCcccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999873

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=100.00  E-value=3.2e-49  Score=352.90  Aligned_cols=203  Identities=64%  Similarity=0.997  Sum_probs=178.6

Q ss_pred             CCCcceEEEEEEec-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc
Q 024304           65 GTEFTDIIYEKAVG-EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY  143 (269)
Q Consensus        65 ~~~~~~v~~~~~~~-~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~  143 (269)
                      ...+++|.+++  + ++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++.....
T Consensus        23 ~~~~~~v~~~~--~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~  100 (289)
T 3t89_A           23 SEGFEDIRYEK--STDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGG  100 (289)
T ss_dssp             CTTCSSEEEEE--ETTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC-------
T ss_pred             CCCCCeEEEEE--ecCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhcccc
Confidence            45678899999  7 99999999999999999999999999999999999999999999999779999999998743211


Q ss_pred             -cchhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhC
Q 024304          144 -ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVG  222 (269)
Q Consensus       144 -~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G  222 (269)
                       ..........+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|
T Consensus       101 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG  180 (289)
T 3t89_A          101 YKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVG  180 (289)
T ss_dssp             ---------CTHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHC
T ss_pred             chhhhHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcC
Confidence             1111111223567788999999999999999999999999999999999999999999999999888888999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       223 ~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      ..++++|+++|+.++|+||+++||||+|+|.+++.+++.++|++|+.
T Consensus       181 ~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~  227 (289)
T 3t89_A          181 QKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQ  227 (289)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCcccHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999873

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=3.5e-49  Score=347.13  Aligned_cols=199  Identities=26%  Similarity=0.345  Sum_probs=176.4

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~  146 (269)
                      ++..|.+++  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++........
T Consensus         4 ~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~   80 (256)
T 3qmj_A            4 SMVTLQIDD--DNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSG-RGFSAGTDLAEMQARITDPN   80 (256)
T ss_dssp             --CCEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TEEECCBCHHHHHHHHHSSS
T ss_pred             CcceEEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCcccCcCHHHHhhcccchh
Confidence            456799999  999999999999999999999999999999999999999999999999 79999999998743211100


Q ss_pred             hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA  226 (269)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a  226 (269)
                      .......+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus        81 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A  160 (256)
T 3qmj_A           81 FSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNA  160 (256)
T ss_dssp             CCCCSSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHHHH
Confidence            00111235677889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++|+++|+.++|+||+++||||+|+|.+++.+.+.++|++|+
T Consensus       161 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  202 (256)
T 3qmj_A          161 AWLLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEILA  202 (256)
T ss_dssp             HHHHHSCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCHHHHHHCCCccEEeCHhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999986

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=100.00  E-value=1.2e-48  Score=345.93  Aligned_cols=198  Identities=28%  Similarity=0.456  Sum_probs=178.6

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~  147 (269)
                      |+.|.+++  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++.........
T Consensus         3 ~~~v~~~~--~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~   79 (268)
T 3i47_A            3 LSDLLYEI--QDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANG-KHFSAGADLTWMQSMANFTEE   79 (268)
T ss_dssp             CCSEEEEE--ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECS-SCSBCSBCHHHHHHHHTCCHH
T ss_pred             CCEEEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCC-CCeeCCCChhhhhccccccHH
Confidence            56799999  999999999999999999999999999999999999999999999999 799999999987532111111


Q ss_pred             hh--hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHH
Q 024304          148 NF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK  225 (269)
Q Consensus       148 ~~--~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~  225 (269)
                      ..  ....+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++ +|++++|..+
T Consensus        80 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~  158 (268)
T 3i47_A           80 ENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISP-YVVRAIGERA  158 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHH-HHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHH-HHHHHhCHHH
Confidence            11  11234567889999999999999999999999999999999999999999999999999999877 8899999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          226 AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      +++|+++|+.++|+||+++||||+|+|.+++.+++.++|++|+.
T Consensus       159 A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~  202 (268)
T 3i47_A          159 AKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISN  202 (268)
T ss_dssp             HHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999863

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=100.00  E-value=5.7e-49  Score=350.94  Aligned_cols=201  Identities=24%  Similarity=0.347  Sum_probs=180.2

Q ss_pred             CCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc
Q 024304           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (269)
Q Consensus        66 ~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~  145 (269)
                      ..|+.|.+++  +++|++||||||+ +|+||.+|+.+|.++++.+++|+++++|||||.|+++||+|+|++++.......
T Consensus         6 ~~~~~i~~~~--~~~va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~   82 (287)
T 3gkb_A            6 DAYSTLRVSS--EHGVARIILDNPP-VNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQ   82 (287)
T ss_dssp             -CCSSEEEEE--ETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHH
T ss_pred             CCCCeEEEEE--ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccc
Confidence            3567899999  9999999999998 699999999999999999999999999999999978999999999875321000


Q ss_pred             h--h--hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeC-CceEecCCCCcccCCCChHHHHHHhh
Q 024304          146 Y--E--NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD-NAIFGQTGPKVGSFDAGYGSSIMSRL  220 (269)
Q Consensus       146 ~--~--~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~-~a~f~~~~~~~Gl~p~~g~~~~l~r~  220 (269)
                      .  .  ......+..++..+.++|||+||+|||+|+|||++|+++||+||+++ +++|++||+++|++|++|++++|+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~  162 (287)
T 3gkb_A           83 ELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGR  162 (287)
T ss_dssp             HHHHTSCTTCCTTHHHHHHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHH
Confidence            0  0  00011245678899999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             hCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       221 ~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      +|..+|++|++||++++|+||+++||||+|+|++++.+++.++|++|+.
T Consensus       163 vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~  211 (287)
T 3gkb_A          163 VGRNRALEVVLTADLFDAETAASYGWINRALPADELDEYVDRVARNIAA  211 (287)
T ss_dssp             HCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHT
T ss_pred             hCHHHHHHHHHcCCCCCHHHHHHCCCCcEEeChhHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999873

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=6.9e-49  Score=359.60  Aligned_cols=198  Identities=22%  Similarity=0.355  Sum_probs=177.5

Q ss_pred             CCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc
Q 024304           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (269)
Q Consensus        66 ~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~  145 (269)
                      ..+++|+++.  +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++.......
T Consensus         6 ~~~e~vl~e~--~~~Va~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~   83 (353)
T 4hdt_A            6 AKNEDVLVNV--EGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKAD   83 (353)
T ss_dssp             --CCSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTT
T ss_pred             CCCCcEEEEE--ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchh
Confidence            3557899999  99999999999999999999999999999999999999999999999988999999999874322111


Q ss_pred             hhhh--hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCH
Q 024304          146 YENF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP  223 (269)
Q Consensus       146 ~~~~--~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~  223 (269)
                      ....  .....+.+...|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| 
T Consensus        84 ~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g-  162 (353)
T 4hdt_A           84 GAEARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPG-  162 (353)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSST-
T ss_pred             hHHHHHHHHHHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhh-
Confidence            1111  1223456788999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHh
Q 024304          224 KKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKC  266 (269)
Q Consensus       224 ~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~  266 (269)
                      +++++|++||++++|+||+++||||+|||+++|++.++++++.
T Consensus       163 ~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~la~~  205 (353)
T 4hdt_A          163 KLGLHAALTGAPFSGADAIVMGFADHYVPHDKIDEFTRAVIAD  205 (353)
T ss_dssp             THHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCHHHHHHcCCCcEEeCHHHHHHHHHHHHHh
Confidence            5999999999999999999999999999999999999998765

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=100.00  E-value=5.1e-49  Score=348.08  Aligned_cols=202  Identities=28%  Similarity=0.378  Sum_probs=175.8

Q ss_pred             CCCCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCC
Q 024304           63 ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG  142 (269)
Q Consensus        63 ~~~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~  142 (269)
                      .++.++++|.+++  +++|++|+||||+++|+||.+|+.+|.++++.+++|+++++|||||.|+++||+|+|++++....
T Consensus         3 ~~m~~~~~v~~~~--~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~   80 (267)
T 3r9t_A            3 GSMTDAPGALAER--RGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRE   80 (267)
T ss_dssp             -----CCSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTC
T ss_pred             CCCCCCCcEEEEE--ECCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhccc
Confidence            3466778899999  99999999999999999999999999999999999999999999999977999999999875432


Q ss_pred             ccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhC
Q 024304          143 YADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVG  222 (269)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G  222 (269)
                      .........+....+  ...++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|
T Consensus        81 ~~~~~~~~~~~~~~~--~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG  158 (267)
T 3r9t_A           81 NLYHPDHPEWGFAGY--VRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLP  158 (267)
T ss_dssp             CCSCTTCGGGCGGGT--TTCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSC
T ss_pred             chhhHHHHhHHHHHH--HHHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcC
Confidence            211111001000111  223899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       223 ~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ..++++|+++|+.++|+||+++||||+|+|.+++.+++.++|++|+
T Consensus       159 ~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  204 (267)
T 3r9t_A          159 RKVAMRLLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALASAIT  204 (267)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSSSEEECTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCccEEcChhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999986

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=100.00  E-value=1.6e-48  Score=347.02  Aligned_cols=202  Identities=25%  Similarity=0.360  Sum_probs=183.0

Q ss_pred             CCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc
Q 024304           65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA  144 (269)
Q Consensus        65 ~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~  144 (269)
                      .++|+.|.+++  +++|++|+||||+++|+||.+|+.+|.++++++++|+++++|||+|.| ++||+|+|++++......
T Consensus        13 ~~~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~   89 (279)
T 3g64_A           13 TPEWRHLRVEI--TDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEG-RGFCSGGDVDEIIGATLS   89 (279)
T ss_dssp             CSCCSSEEEEE--ETTEEEEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECS-SCSBCCBCTTTTHHHHTT
T ss_pred             CCCCCeEEEEE--ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceecCcCHHHHhhcccc
Confidence            56788899999  999999999999999999999999999999999999999999999999 799999999987532211


Q ss_pred             ch-hhh--hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccC-CCChHHHHHHhh
Q 024304          145 DY-ENF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRL  220 (269)
Q Consensus       145 ~~-~~~--~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~-p~~g~~~~l~r~  220 (269)
                      .. ...  ....+.+++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||.++|++ |++|++++|+++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~  169 (279)
T 3g64_A           90 MDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRV  169 (279)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHH
Confidence            11 111  11224577889999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             hCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       221 ~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      +|..++++|+++|+.++|+||+++||||+|+|.+++.+.+.++|++|+.
T Consensus       170 vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~  218 (279)
T 3g64_A          170 VGLGHATRLLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARRLAD  218 (279)
T ss_dssp             HCHHHHHHHHHHCCCEEHHHHHHHTCCSEECCTTCHHHHHHHHHHHHHT
T ss_pred             hCHHHHHHHHHcCCCcCHHHHHHCCCCCEecCchHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999863

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=100.00  E-value=1.4e-48  Score=346.47  Aligned_cols=198  Identities=21%  Similarity=0.326  Sum_probs=179.6

Q ss_pred             CCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc
Q 024304           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (269)
Q Consensus        66 ~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~  145 (269)
                      .+++.|.+++  +++|++|+||||+++|+||.+|+.+|.++++++  |+++++|||+|.| ++||+|+|++++.......
T Consensus        13 m~~~~v~~~~--~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~--d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~   87 (275)
T 3hin_A           13 ADPSTLVVDT--VGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIG-DHFSAGLDLSELRERDATE   87 (275)
T ss_dssp             CCGGGEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHTSSC--CTTCCEEEEEESS-SCSBCCBCGGGCCCCCHHH
T ss_pred             CCCCeEEEEE--ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHh--CcCceEEEEECCC-CCccCCCCHHHHhccChhh
Confidence            4567899999  999999999999999999999999999999999  5789999999999 6999999999876422111


Q ss_pred             hhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHH
Q 024304          146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK  225 (269)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~  225 (269)
                       .......+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+
T Consensus        88 -~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~  166 (275)
T 3hin_A           88 -GLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVAR  166 (275)
T ss_dssp             -HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             -HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHH
Confidence             1111223456778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          226 AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      +++|+++|+.++|+||+++||||+|+|++++.+++.++|++|+.
T Consensus       167 A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~  210 (275)
T 3hin_A          167 MADMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNRVAQ  210 (275)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEESSSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCCCHHHHHHCCCCCEEeChhHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999873

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=100.00  E-value=2.6e-48  Score=343.37  Aligned_cols=196  Identities=27%  Similarity=0.353  Sum_probs=178.9

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccc---cCCc
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT---RDGY  143 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~---~~~~  143 (269)
                      .++.|.+++  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.   ....
T Consensus         3 ~~~~v~~~~--~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~   79 (266)
T 3fdu_A            3 LHPHLNANL--EGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAE-HDFTAGNDMKDFMGFVQNPN   79 (266)
T ss_dssp             CCTTEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCBCHHHHHHHHHSCC
T ss_pred             CCCeEEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCeECCcCHHHHhhhccccc
Confidence            456799999  999999999999999999999999999999999999999999999999 7999999999875   3322


Q ss_pred             cchhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCH
Q 024304          144 ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP  223 (269)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~  223 (269)
                      ...  ........++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        80 ~~~--~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~  157 (266)
T 3fdu_A           80 AGP--AGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGY  157 (266)
T ss_dssp             CSC--GGGSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHCH
T ss_pred             hhh--HHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhCH
Confidence            111  112235677889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          224 KKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       224 ~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      .++++|+++|+.++|+||+++||||+|+|  ++.+++.++|++|+.
T Consensus       158 ~~A~~l~ltg~~i~A~eA~~~GLv~~vv~--~l~~~a~~~a~~la~  201 (266)
T 3fdu_A          158 HKAAELLFTAKKFNAETALQAGLVNEIVE--DAYATAQATAQHLTA  201 (266)
T ss_dssp             HHHHHHHHHCCEECHHHHHHTTSCSEECS--CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCcCHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999  899999999999863

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=100.00  E-value=1.8e-48  Score=343.91  Aligned_cols=199  Identities=22%  Similarity=0.295  Sum_probs=180.0

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCce-ecccccccccc--C-Cc
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF-CSGGDQALRTR--D-GY  143 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~F-c~G~Dl~~~~~--~-~~  143 (269)
                      ++.|.+++  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| +.| |+|+|++++..  . ..
T Consensus         3 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FF~aG~Dl~~~~~~~~~~~   79 (263)
T 3lke_A            3 LSYVHTEI--QNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKH-RAYFSSGPRLEDLLICASDQS   79 (263)
T ss_dssp             CCSEEEEE--CSSEEEEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESC-TTEEECBSCHHHHHHHHHCSS
T ss_pred             CcEEEEEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCC-CceEecCcCHHHHHhhcccCC
Confidence            56799999  999999999999999999999999999999999999999999999999 588 99999998754  1 11


Q ss_pred             cchhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCH
Q 024304          144 ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP  223 (269)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~  223 (269)
                      ..........+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG~  159 (263)
T 3lke_A           80 DVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGY  159 (263)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhCH
Confidence            11111112235677889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCccceecC-CCcHHHHHHHHHHhhcC
Q 024304          224 KKAREMWFLARFYTAEEAEKMGLVNTVVP-VSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       224 ~~a~~l~ltg~~i~a~eA~~~GLv~~vv~-~e~l~~~a~~la~~la~  269 (269)
                      .++++|+++|+.++|+||+++||||+|+| .+++.+++.++|++|+.
T Consensus       160 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~  206 (263)
T 3lke_A          160 EQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSE  206 (263)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCcCHHHHHHcCCCcEecCChhHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999 99999999999999863

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=4.1e-48  Score=340.52  Aligned_cols=195  Identities=32%  Similarity=0.452  Sum_probs=174.3

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~  148 (269)
                      +.|.++.  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++.....  ...
T Consensus         3 ~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~--~~~   77 (257)
T 2ej5_A            3 ETIRYEV--KGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAG-RAFCAGEDLSGVTEEMD--HGD   77 (257)
T ss_dssp             SSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCBCC-------C--HHH
T ss_pred             CceEEEe--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCCcCHHHHhhccc--hhH
Confidence            4688888  899999999999999999999999999999999999999999999998 79999999998753221  111


Q ss_pred             hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE  228 (269)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~  228 (269)
                      .....+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++
T Consensus        78 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~  157 (257)
T 2ej5_A           78 VLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALE  157 (257)
T ss_dssp             HHHHTHHHHHHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHH
Confidence            11112557778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |+++|+.++|+||+++||||+|+|.+++.+.+.+++++|+
T Consensus       158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  197 (257)
T 2ej5_A          158 LAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERLS  197 (257)
T ss_dssp             HHHHCCCEEHHHHHHHTCCSEEECGGGHHHHHHHHHHHHH
T ss_pred             HHHhCCccCHHHHHHcCCcceecChhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999886

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=100.00  E-value=2.1e-48  Score=345.17  Aligned_cols=202  Identities=63%  Similarity=0.985  Sum_probs=177.9

Q ss_pred             CCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc
Q 024304           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (269)
Q Consensus        66 ~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~  145 (269)
                      ..|+.|.++.  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||+|.|+++||+|+|++++.......
T Consensus        10 ~~~~~i~~~~--~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~   87 (273)
T 2uzf_A           10 REYDEIKYEF--YEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVG   87 (273)
T ss_dssp             BCCSSEEEEE--ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC--------C
T ss_pred             CCCceEEEEE--ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhccccch
Confidence            5667899998  89999999999999999999999999999999999999999999999833999999999875321111


Q ss_pred             hhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHH
Q 024304          146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK  225 (269)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~  225 (269)
                      ........+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus        88 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  167 (273)
T 2uzf_A           88 EDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKK  167 (273)
T ss_dssp             CSSSCCCTHHHHHHHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCHHH
T ss_pred             hhhHHHhhHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCHHH
Confidence            11111112456778889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          226 AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      +++|+++|+.++|+||+++||||+|+|.+++.+.+.++|++|+.
T Consensus       168 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~  211 (273)
T 2uzf_A          168 AREIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMK  211 (273)
T ss_dssp             HHHHHHTCCCEEHHHHHHHTSSSEEECGGGSHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCCCCHHHHHHcCCCccccCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999863

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=100.00  E-value=4.5e-48  Score=343.46  Aligned_cols=196  Identities=26%  Similarity=0.444  Sum_probs=179.3

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~  148 (269)
                      +.|.+++  +++|++|+||||++ |+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++....... ..
T Consensus        24 ~~v~~~~--~~~Va~ItlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~-~~   98 (277)
T 4di1_A           24 EFVSVVA--DQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGH-EIFSAGDDMPELRTLNAPE-AD   98 (277)
T ss_dssp             CSEEEEE--ETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCS-SCSBCCBCHHHHHTCCHHH-HH
T ss_pred             ceEEEEE--ECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCEecCcCcccccccChHH-HH
Confidence            5689999  99999999999999 999999999999999999999999999999997 7999999999876432211 11


Q ss_pred             hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE  228 (269)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~  228 (269)
                      .....+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++
T Consensus        99 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~  178 (277)
T 4di1_A           99 TAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAKE  178 (277)
T ss_dssp             HHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHHHHHH
Confidence            11223557788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      |+++|+.++|+||+++||||+|+|.+++.+++.++|++|+.
T Consensus       179 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~  219 (277)
T 4di1_A          179 LVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYLE  219 (277)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHTTTT
T ss_pred             HHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999863

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=100.00  E-value=4.5e-48  Score=340.45  Aligned_cols=197  Identities=31%  Similarity=0.483  Sum_probs=178.0

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~  146 (269)
                      +|..|.++.  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++...... .
T Consensus         3 ~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~-~   78 (258)
T 2pbp_A            3 EFVSIAARQ--EGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRG-RAFAAGADIQEMAKDDPI-R   78 (258)
T ss_dssp             -CCSEEEEE--ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TEEECCCCHHHHHTCCHH-H
T ss_pred             CcceEEEEe--eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCccCCcCHHHHhcccch-h
Confidence            456788988  899999999999999999999999999999999999999999999988 799999999987532210 1


Q ss_pred             hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA  226 (269)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a  226 (269)
                      ... ...+ .++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus        79 ~~~-~~~~-~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  156 (258)
T 2pbp_A           79 LEW-LNQF-ADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRA  156 (258)
T ss_dssp             HHH-HCTT-HHHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred             HHH-HHHH-HHHHHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHHHH
Confidence            111 1123 56778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      ++|+++|+.++|+||+++||||+|+|.+++.+.+.++|++|+.
T Consensus       157 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~  199 (258)
T 2pbp_A          157 LEWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAE  199 (258)
T ss_dssp             HHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCccCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999998863

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.4e-48  Score=344.54  Aligned_cols=198  Identities=34%  Similarity=0.494  Sum_probs=179.9

Q ss_pred             CCCcceEEEEEEecCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc
Q 024304           65 GTEFTDIIYEKAVGEG-IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY  143 (269)
Q Consensus        65 ~~~~~~v~~~~~~~~g-v~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~  143 (269)
                      +.+++.|.+++  +++ |++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.....
T Consensus         5 mm~~~~i~~~~--~~~gv~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~   81 (263)
T 3moy_A            5 MTTYTTIATSR--PVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSE-RAFAAGADIAEMVTLTP   81 (263)
T ss_dssp             -CCCSSEEEEC--CSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCS-SEEEESBCHHHHTTCCH
T ss_pred             cCCCCeEEEEE--eCCeEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeeCCcChHHHhccCc
Confidence            44567899998  777 999999999999999999999999999999999999999999976 79999999998754321


Q ss_pred             cchhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCH
Q 024304          144 ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP  223 (269)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~  223 (269)
                      .  . .....+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        82 ~--~-~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~  158 (263)
T 3moy_A           82 H--Q-ARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGK  158 (263)
T ss_dssp             H--H-HHHTTTTHHHHHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCH
T ss_pred             h--h-HHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCH
Confidence            1  1 112234566788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          224 KKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       224 ~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      .++++|+++|+.++|+||+++||||+|+|.+++.+++.++|++|+
T Consensus       159 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  203 (263)
T 3moy_A          159 AKAMDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRIA  203 (263)
T ss_dssp             HHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCccEecCchHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999886

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=100.00  E-value=3.2e-48  Score=340.79  Aligned_cols=193  Identities=30%  Similarity=0.441  Sum_probs=177.2

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~  146 (269)
                      .++.|.+++  +++|++|+||||+++|+||.+|+.+|.++++.+++|+++++|||+|.| ++||+|+|++++..     .
T Consensus         4 ~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~-----~   75 (255)
T 3p5m_A            4 SMNGISVEH--DGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAG-RAFCSGGDLTGGDT-----A   75 (255)
T ss_dssp             CBTTEEEEE--ETTEEEEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCEECC---CH-----H
T ss_pred             CCceEEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCCCChhhhcc-----h
Confidence            345689999  999999999999999999999999999999999999999999999999 79999999998752     1


Q ss_pred             hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA  226 (269)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a  226 (269)
                        .....+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..++
T Consensus        76 --~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A  153 (255)
T 3p5m_A           76 --GAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRART  153 (255)
T ss_dssp             --HHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHH
T ss_pred             --HHHHHHHHHHHHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHHH
Confidence              112235677889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      ++|+++|+.++|+||+++||||+|+|.+++.+.+.++|++|+.
T Consensus       154 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~  196 (255)
T 3p5m_A          154 SRMAMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSVSG  196 (255)
T ss_dssp             HHHHHHCCCEEHHHHHHTTSCSEECCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCcCHHHHHHCCCCCEeeCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999863

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=100.00  E-value=8e-48  Score=344.15  Aligned_cols=197  Identities=27%  Similarity=0.408  Sum_probs=173.6

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch--
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY--  146 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~--  146 (269)
                      ..|.++.  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++........  
T Consensus        24 ~~v~~~~--~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~~~~~~~~  100 (290)
T 3sll_A           24 FVLVDRP--RPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAG-KGFCSGADQKSAGPIPHIGGLT  100 (290)
T ss_dssp             CEEEEEE--ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEEST-TCSBCC------CCCSSCTTCC
T ss_pred             eEEEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCC-CCeeCCcChHHHhccccccccc
Confidence            5688888  999999999999999999999999999999999999999999999999 79999999998754322111  


Q ss_pred             ----hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCC-ChHHHHHHhhh
Q 024304          147 ----ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDA-GYGSSIMSRLV  221 (269)
Q Consensus       147 ----~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~-~g~~~~l~r~~  221 (269)
                          .......+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +|++++|++++
T Consensus       101 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~v  180 (290)
T 3sll_A          101 QPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAI  180 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHHh
Confidence                0111223457788999999999999999999999999999999999999999999999999999 99999999999


Q ss_pred             CHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          222 GPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       222 G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |..++++|+++|+.++|+||+++||||+|+|.+++.+++.++|++|+
T Consensus       181 G~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la  227 (290)
T 3sll_A          181 GTSRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIA  227 (290)
T ss_dssp             CHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999886

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=100.00  E-value=4e-48  Score=342.00  Aligned_cols=200  Identities=28%  Similarity=0.375  Sum_probs=171.9

Q ss_pred             CCCCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCC
Q 024304           63 ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG  142 (269)
Q Consensus        63 ~~~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~  142 (269)
                      .++.++++|.+++  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++ ..  .
T Consensus         3 ~~m~~~~~v~~~~--~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~-~~--~   76 (265)
T 3rsi_A            3 GSMSAARELLVER--DGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAG-SAYCVGGDLS-DG--W   76 (265)
T ss_dssp             ------CCEEEEE--ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSEECC---------
T ss_pred             CCCCCCCcEEEEE--ECCEEEEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCcccCcCCC-cc--c
Confidence            3466778899999  999999999999999999999999999999999999999999999999 6999999998 22  1


Q ss_pred             ccchhhhhhhhHHH-HHHHH-h--cCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHH
Q 024304          143 YADYENFGRLNVLD-LQVQI-R--RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMS  218 (269)
Q Consensus       143 ~~~~~~~~~~~~~~-l~~~i-~--~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~  218 (269)
                      ......+ ...... ++..+ .  .+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|+
T Consensus        77 ~~~~~~~-~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~  155 (265)
T 3rsi_A           77 MVRDGSA-PPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLK  155 (265)
T ss_dssp             ---------CCCHHHHHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHH
T ss_pred             ccchHHH-HHHhHHHHHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHH
Confidence            1111111 111234 67788 8  99999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          219 RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       219 r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      +++|..++++|+++|+.++|+||+++||||+|+|.+++.+++.++|++|+.
T Consensus       156 ~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~  206 (265)
T 3rsi_A          156 RQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRIVR  206 (265)
T ss_dssp             HHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHT
T ss_pred             HHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecChhHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999863

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=4.7e-49  Score=346.70  Aligned_cols=200  Identities=21%  Similarity=0.204  Sum_probs=178.6

Q ss_pred             CCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc
Q 024304           65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA  144 (269)
Q Consensus        65 ~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~  144 (269)
                      ...++.|.+++  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| +.||+|+|++++......
T Consensus         8 ~~~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~   84 (258)
T 3lao_A            8 NSGPGRVTREQ--RGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHG-EHFTAGLDLMELAPKLAA   84 (258)
T ss_dssp             CCSSCCEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCBCHHHHGGGCBT
T ss_pred             CCCCCeEEEEE--ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CCeecCcCHHHHhhccch
Confidence            34567899999  999999999999999999999999999999999999999999999999 589999999987543221


Q ss_pred             chhhhhhhhHHHHHHHH-hcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCH
Q 024304          145 DYENFGRLNVLDLQVQI-RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP  223 (269)
Q Consensus       145 ~~~~~~~~~~~~l~~~i-~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~  223 (269)
                      ...... ..+.+++..+ .++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        85 ~~~~~~-~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  163 (258)
T 3lao_A           85 SGFRYP-DGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGW  163 (258)
T ss_dssp             TBCCCC-TTCCCTTSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCH
T ss_pred             hhHHHH-HHHHHHHHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCH
Confidence            111111 1122334567 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          224 KKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       224 ~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      .++++|+++|+.++|+||+++||||+|+|++++.+++.++|++|+
T Consensus       164 ~~A~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  208 (258)
T 3lao_A          164 TDAMRYILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERIA  208 (258)
T ss_dssp             HHHHHHHTTCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999886

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=100.00  E-value=2.7e-48  Score=344.96  Aligned_cols=201  Identities=30%  Similarity=0.455  Sum_probs=177.7

Q ss_pred             CCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCC--
Q 024304           65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG--  142 (269)
Q Consensus        65 ~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~--  142 (269)
                      ..+|+.|.++.  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++....  
T Consensus         5 ~~~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~   81 (276)
T 2j5i_A            5 EGRWKTVKVEI--EDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEYFREVDA   81 (276)
T ss_dssp             TTCCSSEEEEE--ETEEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEEST-TCSBCCBCHHHHHHHHHH
T ss_pred             cCCCceEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCCcCCcChhhHhhcccc
Confidence            45677899998  899999999999999999999999999999999999999999999998 6999999998863211  


Q ss_pred             -ccchhhhhhhhHHHH-HHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhh
Q 024304          143 -YADYENFGRLNVLDL-QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL  220 (269)
Q Consensus       143 -~~~~~~~~~~~~~~l-~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~  220 (269)
                       ..............+ +..+..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~  161 (276)
T 2j5i_A           82 GPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADT  161 (276)
T ss_dssp             SCTTHHHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHH
Confidence             000000000111232 456789999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       221 ~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +|..++++|+++|+.++|+||+++||||+|+|.+++.+.+.++|++|+
T Consensus       162 vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  209 (276)
T 2j5i_A          162 VGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQLREVTIELARNLL  209 (276)
T ss_dssp             SCHHHHHHHHHHCCEEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999986

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=5e-49  Score=347.78  Aligned_cols=202  Identities=25%  Similarity=0.333  Sum_probs=176.5

Q ss_pred             CCCCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCC
Q 024304           63 ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG  142 (269)
Q Consensus        63 ~~~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~  142 (269)
                      +++.+++.|.+++  +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+ .||+|+|++++....
T Consensus         3 ~~m~~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~-~F~aG~Dl~~~~~~~   79 (265)
T 3swx_A            3 GSMSDYETLRIRR--DGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGP-LFTAGLDLASVAAEI   79 (265)
T ss_dssp             ----CCSSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTT-CSBCCBCHHHHHHHH
T ss_pred             CCCCCCceEEEEE--ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCC-CcccCcChHHHhhcc
Confidence            3455678899999  9999999999999999999999999999999999999999999999994 799999998864321


Q ss_pred             ccchhhhhhhhHHHHHHHH-hcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhh
Q 024304          143 YADYENFGRLNVLDLQVQI-RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV  221 (269)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i-~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~  221 (269)
                      ........ ....+++..+ .++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++
T Consensus        80 ~~~~~~~~-~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~v  158 (265)
T 3swx_A           80 QGGASLTP-EGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTA  158 (265)
T ss_dssp             C--CCCCC-TTCCCTTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHH
T ss_pred             cchhHHHH-HHHHHHHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHh
Confidence            11000000 0112234466 899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          222 GPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       222 G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |..++++|+++|+.++|+||+++||||+|+|++++.+.+.++|++|+
T Consensus       159 G~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  205 (265)
T 3swx_A          159 GWGNAMRWMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTIA  205 (265)
T ss_dssp             CHHHHHHHHTTCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCcCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999886

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=100.00  E-value=9e-49  Score=345.55  Aligned_cols=195  Identities=29%  Similarity=0.391  Sum_probs=175.2

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~  147 (269)
                      +..|.+++  +++|++|+||||+++|+||.+|+.+|.++++.+++|+++++|||+|.| ++||+|+|++++.........
T Consensus        10 m~~v~~~~--~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~   86 (262)
T 3r9q_A           10 QPAVRVEK--AGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDN-GTFCAGADLKAMGTDRGNELH   86 (262)
T ss_dssp             CCSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCTTTTTSTTSCCCC
T ss_pred             CCEEEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcCHHHHhccChhhHH
Confidence            45699999  999999999999999999999999999999999999999999999999 699999999987543221100


Q ss_pred             hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHH
Q 024304          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR  227 (269)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~  227 (269)
                         ......+...+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..+++
T Consensus        87 ---~~~~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~  163 (262)
T 3r9q_A           87 ---PHGPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAM  163 (262)
T ss_dssp             ---TTSSCTTSSTTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCHHHHH
T ss_pred             ---HhhhhHHHHHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCHHHHH
Confidence               00011122345689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          228 EMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       228 ~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +|+++|+.++|+||+++||||+|+|.+++.+++.++|++|+
T Consensus       164 ~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  204 (262)
T 3r9q_A          164 DLILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIA  204 (262)
T ss_dssp             HHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCcCCHHHHHHcCCccEecChhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999986

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=1.4e-47  Score=340.94  Aligned_cols=199  Identities=31%  Similarity=0.425  Sum_probs=176.5

Q ss_pred             CCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc
Q 024304           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (269)
Q Consensus        66 ~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~  145 (269)
                      +.|+.|.+++  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++ +|||+|.| ++||+|+|++++.......
T Consensus        23 ~~~~~i~~~~--~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g-~~FcaG~Dl~~~~~~~~~~   98 (280)
T 2f6q_A           23 MGFETLVVTS--EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNG-DYYSSGNDLTNFTDIPPGG   98 (280)
T ss_dssp             EECSSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEEST-TCSBCCBCC----CCCTTH
T ss_pred             CCCCeEEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCC-CCcccCCCHHHHhhcCcch
Confidence            3567899998  899999999999999999999999999999999999999 99999998 7999999999875422111


Q ss_pred             hhhh---hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhC
Q 024304          146 YENF---GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVG  222 (269)
Q Consensus       146 ~~~~---~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G  222 (269)
                      ....   ....+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG  178 (280)
T 2f6q_A           99 VEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMS  178 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhC
Confidence            1111   1112456778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       223 ~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ..++++|+++|+.++|+||+++||||+|+|.+++.+.+.+++++|+
T Consensus       179 ~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  224 (280)
T 2f6q_A          179 PAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFA  224 (280)
T ss_dssp             HHHHHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCcceEECHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999986

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=100.00  E-value=1.4e-48  Score=350.20  Aligned_cols=199  Identities=30%  Similarity=0.392  Sum_probs=170.1

Q ss_pred             CcceEEEEEEecC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceecccccccccc---CC
Q 024304           67 EFTDIIYEKAVGE-GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTR---DG  142 (269)
Q Consensus        67 ~~~~v~~~~~~~~-gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~---~~  142 (269)
                      .++.|.+++  ++ +|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..   ..
T Consensus        27 ~~~~v~~~~--~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G-~~FcaG~Dl~~~~~~~~~~  103 (298)
T 3qre_A           27 AQDAVLYEA--TPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRG-RGFCAGAYLGSADAAAGYD  103 (298)
T ss_dssp             -CCSEEEEE--CTTSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSEECC------------
T ss_pred             CCCeEEEEE--eCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCcccCcCHHHHhhccccc
Confidence            467899999  88 9999999999999999999999999999999999999999999999 79999999998753   11


Q ss_pred             ccc----hhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHH
Q 024304          143 YAD----YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMS  218 (269)
Q Consensus       143 ~~~----~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~  218 (269)
                      ...    ...........+...+..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~  183 (298)
T 3qre_A          104 KTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILP  183 (298)
T ss_dssp             -----------------CCTTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHH
T ss_pred             cccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHH
Confidence            110    0011111123455678899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          219 RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       219 r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |++|..++++|+++|+.++|+||+++||||+|+|.+++.+.+.++|++|+
T Consensus       184 r~vG~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la  233 (298)
T 3qre_A          184 RLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIA  233 (298)
T ss_dssp             HHSCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHcCCCCCHHHHHHcCCCeEecCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999886

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=100.00  E-value=1.9e-47  Score=337.74  Aligned_cols=196  Identities=26%  Similarity=0.324  Sum_probs=178.2

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEc-CCCCceeccccccccccCCccc
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG-KGTEAFCSGGDQALRTRDGYAD  145 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g-~g~~~Fc~G~Dl~~~~~~~~~~  145 (269)
                      .++.|.++.  +++|++|+|||| ++|+||.+|+.+|.++++.++.|+++++|||+| .| ++||+|+|++++... .. 
T Consensus         7 ~~~~i~~~~--~~~v~~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g-~~F~aG~Dl~~~~~~-~~-   80 (265)
T 2ppy_A            7 KKQYLTVFK--EDGIAEIHLHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVP-KFFSAGADINFLRSA-DP-   80 (265)
T ss_dssp             ECSSEEEEE--ETTEEEEEECSS-TTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECST-TEEECCBCHHHHTTS-CH-
T ss_pred             CCCeEEEEe--eCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCC-CeeeeCcCHHHHhcc-ch-
Confidence            456789998  899999999999 999999999999999999999999999999999 77 799999999987541 11 


Q ss_pred             hhhhhhhhH-HHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCc-eEecCCCCcccCCCChHHHHHHhhhCH
Q 024304          146 YENFGRLNV-LDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA-IFGQTGPKVGSFDAGYGSSIMSRLVGP  223 (269)
Q Consensus       146 ~~~~~~~~~-~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a-~f~~~~~~~Gl~p~~g~~~~l~r~~G~  223 (269)
                      ........+ .+++..+.++|||+||+|||+|+|||++|+++||+||+++++ +|++||+++|++|++|++++|++++|.
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG~  160 (265)
T 2ppy_A           81 RFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGY  160 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHCH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHhCH
Confidence            111111224 567788999999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          224 KKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       224 ~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      .++++|+++|+.++|+||+++||||+|+|.+++.+.+.+++++|+
T Consensus       161 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  205 (265)
T 2ppy_A          161 SRALDMNITGETITPQEALEIGLVNRVFPQAETRERTREYARKLA  205 (265)
T ss_dssp             HHHHHHHHHCCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999886

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=100.00  E-value=1.2e-47  Score=336.20  Aligned_cols=195  Identities=24%  Similarity=0.292  Sum_probs=175.1

Q ss_pred             EEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEc-CCCCceeccccccccccCCccchhhh
Q 024304           71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG-KGTEAFCSGGDQALRTRDGYADYENF  149 (269)
Q Consensus        71 v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g-~g~~~Fc~G~Dl~~~~~~~~~~~~~~  149 (269)
                      |.+++  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||+| .| ++||+|+|++++...........
T Consensus         2 v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g-~~F~aG~Dl~~~~~~~~~~~~~~   78 (250)
T 2a7k_A            2 VFEEN--SDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAE-RSFSAGGDFNEVKQLSRSEDIEE   78 (250)
T ss_dssp             EEEEE--ETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTT-SCSBCBSCHHHHHTC-CHHHHHH
T ss_pred             eEEEe--eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCC-CCccCCcCHHHHhhcCchhhHHH
Confidence            56777  8999999999999999999999999999999999999999999999 77 79999999998754321111011


Q ss_pred             hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHH
Q 024304          150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREM  229 (269)
Q Consensus       150 ~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l  229 (269)
                      ....+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++ +|++++|..++++|
T Consensus        79 ~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~a~~l  157 (250)
T 2a7k_A           79 WIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEI  157 (250)
T ss_dssp             HHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHHHCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHHhHHHHHHHH
Confidence            11224567788999999999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             HHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          230 WFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       230 ~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      +++|+.++|+||+++||||+|+|.+++.+.+.+++++|+.
T Consensus       158 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~  197 (250)
T 2a7k_A          158 IYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMAS  197 (250)
T ss_dssp             HHHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHT
T ss_pred             HHcCCcccHHHHHHcCCcceecCHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999998863

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=100.00  E-value=1.7e-48  Score=342.73  Aligned_cols=192  Identities=29%  Similarity=0.439  Sum_probs=173.4

Q ss_pred             CCCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc
Q 024304           64 SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY  143 (269)
Q Consensus        64 ~~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~  143 (269)
                      ++.+++.|.+++  +++|++|+||||+++|+||.+|+.+|.++++++++|+++++|||+|.| ++||+|+|++++.... 
T Consensus         4 ~m~~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g-~~F~aG~Dl~~~~~~~-   79 (256)
T 3pe8_A            4 SMADSPVLLVDT--TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGAD-PVFCAGLDLKELGDTT-   79 (256)
T ss_dssp             ----CCSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEEST-TCSBCCBCTTTC-----
T ss_pred             CCCCCCcEEEEE--ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCC-CCccCCcCHHHHhhhH-
Confidence            356677899999  999999999999999999999999999999999999999999999999 6999999999875321 


Q ss_pred             cchhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCH
Q 024304          144 ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP  223 (269)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~  223 (269)
                               .+..+...+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        80 ---------~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  150 (256)
T 3pe8_A           80 ---------ELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGV  150 (256)
T ss_dssp             --------------CCCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCH
T ss_pred             ---------HHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCH
Confidence                     11223356789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          224 KKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       224 ~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      .++++|+++|+.++|+||+++||||+|+|.+++.+.+.++|++|+
T Consensus       151 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  195 (256)
T 3pe8_A          151 GLARRMSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVAASIV  195 (256)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSCEECGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCCeEEeCHhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999986

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=100.00  E-value=6e-48  Score=342.89  Aligned_cols=196  Identities=34%  Similarity=0.520  Sum_probs=177.8

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~  146 (269)
                      .++.|.+++  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++....... 
T Consensus        23 ~~~~v~~~~--~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~-   98 (278)
T 3h81_A           23 TYETILVER--DQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSA-KAFAAGADIKEMADLTFAD-   98 (278)
T ss_dssp             CCSSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCS-SEEECCBCSHHHHTCCHHH-
T ss_pred             CCCeEEEEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCeecCcCHHHHhccChhh-
Confidence            467899999  899999999999999999999999999999999999999999999976 7999999999876432111 


Q ss_pred             hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA  226 (269)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a  226 (269)
                       ......+.. +..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus        99 -~~~~~~~~~-~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A  176 (278)
T 3h81_A           99 -AFTADFFAT-WGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKA  176 (278)
T ss_dssp             -HHHHTTTGG-GHHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred             -HHHHHHHHH-HHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHHH
Confidence             111111122 568899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++|+++|+.++|+||+++||||+|+|.+++.+++.++|++|+
T Consensus       177 ~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  218 (278)
T 3h81_A          177 MDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTIS  218 (278)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcCHHHHHHCCCccEEeChhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999986

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=100.00  E-value=1.2e-48  Score=345.42  Aligned_cols=197  Identities=27%  Similarity=0.370  Sum_probs=177.8

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~  146 (269)
                      .++.|.++.  +++|++|+||||+++|+||.+|+.+|.++++.+++|+++++|||+|.| ++||+|+|++++........
T Consensus         5 m~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~   81 (265)
T 3qxz_A            5 MVTELHEEI--RDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAP-PAFCSGAQISAAAETFAAPR   81 (265)
T ss_dssp             -CCEEEEEE--ETTEEEEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TEEECCBCSTTCTTCCCCCC
T ss_pred             ccceEEEEE--ECCEEEEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CccccCcChHHHhhccchhH
Confidence            356789998  999999999999999999999999999999999999999999999999 79999999998754322111


Q ss_pred             hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA  226 (269)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a  226 (269)
                      ..... . ..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus        82 ~~~~~-~-~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A  159 (265)
T 3qxz_A           82 NPDFS-A-SPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVA  159 (265)
T ss_dssp             SSCCC-S-CCSSSCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHHHH
T ss_pred             HHHHH-H-HHHHHHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHH
Confidence            11111 1 345567889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++|+++|+.++|+||+++||||+|+|.+++.+++.++|++|+
T Consensus       160 ~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  201 (265)
T 3qxz_A          160 AELLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDIA  201 (265)
T ss_dssp             HHHHHHCCCBCHHHHHHHTSCSEEECHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCcCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999886

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=100.00  E-value=7.6e-48  Score=343.77  Aligned_cols=198  Identities=31%  Similarity=0.416  Sum_probs=177.0

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~  146 (269)
                      ....|.++.  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++........
T Consensus        31 ~~~~v~~~~--~~~V~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~  107 (287)
T 2vx2_A           31 EPRPTSARQ--LDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEG-PVFSSGHDLKELTEEQGRDY  107 (287)
T ss_dssp             -CCSEEEEE--ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESS-SEEECCSCCC-CCGGGCHHH
T ss_pred             CCcceEEEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCC-CCccCCcCHHHHhcccchhH
Confidence            335788998  899999999999999999999999999999999999999999999998 79999999998753211110


Q ss_pred             hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA  226 (269)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a  226 (269)
                      .......+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++ |++++|..++
T Consensus       108 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~~A  186 (287)
T 2vx2_A          108 HAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVA  186 (287)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhHHHH
Confidence            111112245677889999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++|+++|+.++|+||+++||||+|+|.+++.+.+.++|++|+
T Consensus       187 ~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  228 (287)
T 2vx2_A          187 LEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIA  228 (287)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999986

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=100.00  E-value=6.2e-48  Score=341.49  Aligned_cols=196  Identities=31%  Similarity=0.424  Sum_probs=177.1

Q ss_pred             eEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc-c-chh
Q 024304           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-A-DYE  147 (269)
Q Consensus        70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~-~-~~~  147 (269)
                      .|.++.  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++..... . ...
T Consensus         4 ~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~   80 (269)
T 1nzy_A            4 AIGHRV--EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAE-DAFCAGFYLREIPLDKGVAGVRD   80 (269)
T ss_dssp             SEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCGGGSCSSSHHHHHHH
T ss_pred             eEEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CCcccCcCHHHHhhcccccChHH
Confidence            578888  899999999999999999999999999999999999999999999998 79999999998753210 0 111


Q ss_pred             h--hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHH
Q 024304          148 N--FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK  225 (269)
Q Consensus       148 ~--~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~  225 (269)
                      .  .....+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  160 (269)
T 1nzy_A           81 HFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRR  160 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhhHHH
Confidence            1  11112456778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          226 AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +++|+++|+.++|+||+++||||+|+|.+++.+.+.+++++|+
T Consensus       161 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  203 (269)
T 1nzy_A          161 AMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELA  203 (269)
T ss_dssp             HHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999886

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=100.00  E-value=5.5e-48  Score=340.39  Aligned_cols=197  Identities=25%  Similarity=0.335  Sum_probs=177.4

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEc-CCCCceeccccccccccCCccch
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG-KGTEAFCSGGDQALRTRDGYADY  146 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g-~g~~~Fc~G~Dl~~~~~~~~~~~  146 (269)
                      |+.|.+++  +++|++|+||||+++|+||.+|+.+|.+++++++.|+ +++|||+| .|+++||+|+|++++....... 
T Consensus         3 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~-   78 (261)
T 1ef8_A            3 YQYVNVVT--INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRDP-   78 (261)
T ss_dssp             CSSEEEEE--ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----CT-
T ss_pred             cceEEEEE--eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCchh-
Confidence            56789999  8999999999999999999999999999999999999 99999999 8867999999999875322111 


Q ss_pred             hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA  226 (269)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a  226 (269)
                      .. ....+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus        79 ~~-~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  157 (261)
T 1ef8_A           79 LS-YDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIV  157 (261)
T ss_dssp             TC-TTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHHH
T ss_pred             HH-HHHHHHHHHHHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHhCHHHH
Confidence            11 11224677788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      ++|+++|+.++|+||+++||||+|+|.+++.+.+.+++++|+.
T Consensus       158 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~  200 (261)
T 1ef8_A          158 KELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISE  200 (261)
T ss_dssp             HHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCccCHHHHHHCCCcccccCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999863

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=100.00  E-value=4.6e-48  Score=343.82  Aligned_cols=198  Identities=29%  Similarity=0.407  Sum_probs=165.5

Q ss_pred             CCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc
Q 024304           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (269)
Q Consensus        66 ~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~  145 (269)
                      ....+|.+++  +++|++|+||||+++|+||.+|+.+|.++++++++|+++++|||+|.| ++||+|+|++++...... 
T Consensus        17 ~~~~~v~~~~--~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~-   92 (278)
T 4f47_A           17 ESGPDALVEQ--RGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAG-GYFCAGMDLKAATKKPPG-   92 (278)
T ss_dssp             --CCSEEEEE--ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCCC---------------
T ss_pred             CCCCceEEEE--ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CcccCCcChHhhhccchh-
Confidence            3456799999  999999999999999999999999999999999999999999999999 699999999987543211 


Q ss_pred             hhhhhh-hhHHHHHHHHh---cCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhh
Q 024304          146 YENFGR-LNVLDLQVQIR---RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV  221 (269)
Q Consensus       146 ~~~~~~-~~~~~l~~~i~---~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~  221 (269)
                       ..... .....++..+.   ++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++
T Consensus        93 -~~~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v  171 (278)
T 4f47_A           93 -DSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQI  171 (278)
T ss_dssp             ---------CTTCBTTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHS
T ss_pred             -hhHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHh
Confidence             11100 00112334455   89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          222 GPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       222 G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |..++++|+++|+.++|+||+++||||+|+|.+++.+++.++|++|+
T Consensus       172 G~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  218 (278)
T 4f47_A          172 PYTVACDLLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEIAEIIA  218 (278)
T ss_dssp             CHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCcCCHHHHHHCCCceEeeChhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999886

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=100.00  E-value=2.9e-47  Score=330.56  Aligned_cols=195  Identities=18%  Similarity=0.222  Sum_probs=174.6

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~  148 (269)
                      +.|.+++  +++|++|+||||+ .|+||.+|+.+|.++++++++| ++++|||+|.| ++||+|+|++++....... ..
T Consensus         5 ~~v~~~~--~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~g-~~F~aG~Dl~~~~~~~~~~-~~   78 (233)
T 3r6h_A            5 GPVTYTH--DDAIGVIRMDDGK-VNVLGPTMQQALNEAIDAADRD-NVGALVIAGNH-RVFSGGFDLKVLTSGEAKP-AI   78 (233)
T ss_dssp             CCEEEEE--ETTEEEEEECCSS-SCCCSHHHHHHHHHHHHHHHHH-TCSEEEEECCS-SEEECCSCHHHHC---CHH-HH
T ss_pred             CceEEEE--ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEECCC-CCccCCcChHHHhccChHH-HH
Confidence            3588888  9999999999985 6999999999999999999987 58999999998 7999999999976432111 11


Q ss_pred             hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE  228 (269)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~  228 (269)
                      .......+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++++++++++++|..++++
T Consensus        79 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a~~  158 (233)
T 3r6h_A           79 DMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQ  158 (233)
T ss_dssp             HHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHHHHHH
Confidence            11223457788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      ++++|++++|+||+++||||+|+|++++.+++.++|++|+.
T Consensus       159 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~  199 (233)
T 3r6h_A          159 AAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREFAG  199 (233)
T ss_dssp             HHHSCCEECHHHHHHHTSCSEECCGGGHHHHHHHHHHHHHT
T ss_pred             HHHcCCcCCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999863

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=100.00  E-value=1.1e-47  Score=342.86  Aligned_cols=201  Identities=21%  Similarity=0.311  Sum_probs=180.3

Q ss_pred             CCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc
Q 024304           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (269)
Q Consensus        66 ~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~  145 (269)
                      ..|+.|.+++  +++|++|+||||+ +|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++.......
T Consensus         5 ~~~~~v~~~~--~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~   81 (289)
T 3h0u_A            5 ASYETIKARL--DGTVLSATFNAPP-MNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEA   81 (289)
T ss_dssp             CCCSSEEEEE--ETTEEEEEECCTT-TCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHH
T ss_pred             CCCCeEEEEE--ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcch
Confidence            4677899999  9999999999998 799999999999999999999999999999999976777888999875321100


Q ss_pred             hhh--hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC-ceEecCCCCcccCCCChHHHHHHhhhC
Q 024304          146 YEN--FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVG  222 (269)
Q Consensus       146 ~~~--~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~~~~~~Gl~p~~g~~~~l~r~~G  222 (269)
                      ...  .....+..++..+.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|++|++|++++|++++|
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG  161 (289)
T 3h0u_A           82 AKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLG  161 (289)
T ss_dssp             HTTSSTTCCSHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHC
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHhC
Confidence            000  11223567888999999999999999999999999999999999998 999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       223 ~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      ..++++|+++|+.++|+||+++||||+|+|++++.+.+.++|++|+.
T Consensus       162 ~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~  208 (289)
T 3h0u_A          162 RGRALEAVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMSG  208 (289)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999873

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=100.00  E-value=2.5e-47  Score=336.42  Aligned_cols=203  Identities=21%  Similarity=0.262  Sum_probs=180.5

Q ss_pred             CCCCCcceEEEEEEecC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccC
Q 024304           63 ESGTEFTDIIYEKAVGE-GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRD  141 (269)
Q Consensus        63 ~~~~~~~~v~~~~~~~~-gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~  141 (269)
                      ++...|+.|.+++  ++ +|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++...
T Consensus        17 ~~~~~~~~i~~~~--~~~~Va~ItLnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~   93 (263)
T 2j5g_A           17 EYFTKYENLHFHR--DENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSG-DAWMAEIDFPSLGDV   93 (263)
T ss_dssp             GGGGSCTTEEEEE--CTTCEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TEEECEECSGGGCCT
T ss_pred             cccCCCCeEEEEE--cCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCcccCcCHHHHhcc
Confidence            3455667899998  88 9999999999999999999999999999999999999999999998 699999999987532


Q ss_pred             CccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEec-CCCCcccCCCChHHHHHHhh
Q 024304          142 GYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ-TGPKVGSFDAGYGSSIMSRL  220 (269)
Q Consensus       142 ~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~-~~~~~Gl~p~~g~~~~l~r~  220 (269)
                      ............+.+++..+.++|||+||+|||+|+ ||++|+++||+||++++++|++ ||+++|++|++|++++|+++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r~  172 (263)
T 2j5g_A           94 TNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLA  172 (263)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHHHH
Confidence            111110001112456778899999999999999999 6999999999999999999999 99999999999999999999


Q ss_pred             hCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       221 ~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      +|..++++|+++|+.++|+||+++||||+|+|.+++.+.+.+++++|+.
T Consensus       173 vG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~  221 (263)
T 2j5g_A          173 LGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIARTLAK  221 (263)
T ss_dssp             HHHHHHHHHHHTTCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999863

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=100.00  E-value=3.3e-47  Score=335.80  Aligned_cols=197  Identities=26%  Similarity=0.391  Sum_probs=174.0

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCC---ccc
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG---YAD  145 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~---~~~  145 (269)
                      +.+.++.. +++|++|+||||++ |+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....   ...
T Consensus         6 ~~~~~~~~-~~~v~~itlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~   82 (263)
T 3l3s_A            6 DGLLGEVL-SEGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPG-RIFCAGHDLKEIGRHRADPDEG   82 (263)
T ss_dssp             --CEEEEE-SSSEEEEEECSTTT-CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCS-SEEECCSCSCCCCC-----CCS
T ss_pred             cceEEEEe-eCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcChHHHhhcccccccc
Confidence            44555554 89999999999999 999999999999999999999999999999999 7999999999876431   111


Q ss_pred             hhhh--hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCH
Q 024304          146 YENF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP  223 (269)
Q Consensus       146 ~~~~--~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~  223 (269)
                      ....  ....+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++ +++++++|++++|.
T Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~-~~g~~~~l~r~vG~  161 (263)
T 3l3s_A           83 RAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGF-CTTPAVAVSRVIGR  161 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSC-CHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCC-CccHHHHHHHHcCH
Confidence            1111  12235677889999999999999999999999999999999999999999999999999 56789999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          224 KKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       224 ~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      .++++|+++|+.++|+||+++||||+|+|.+++.+.+.++|++|+.
T Consensus       162 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~  207 (263)
T 3l3s_A          162 RAVTEMALTGATYDADWALAAGLINRILPEAALATHVADLAGALAA  207 (263)
T ss_dssp             HHHHHHHHHCCEEEHHHHHHHTSSSEECCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999863

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.7e-47  Score=341.29  Aligned_cols=194  Identities=32%  Similarity=0.486  Sum_probs=176.7

Q ss_pred             EEEEEEec--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304           71 IIYEKAVG--EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (269)
Q Consensus        71 v~~~~~~~--~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~  148 (269)
                      |.+++  +  ++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..........
T Consensus        26 v~~~~--~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~~~~~~~~  102 (286)
T 3myb_A           26 LLLQD--RDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASG-KAFCAGHDLKEMRAEPSREYYE  102 (286)
T ss_dssp             SEEEE--ECTTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECS-SCSBCCBCHHHHHSSCCHHHHH
T ss_pred             EEEEE--ecCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCC-CCccCCcChhhhhccccHHHHH
Confidence            88888  8  99999999999999999999999999999999999999999999999 7999999999986522111111


Q ss_pred             hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE  228 (269)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~  228 (269)
                      .....+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++ +++++++|++++|..++++
T Consensus       103 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~-~~g~~~~L~r~vG~~~A~~  181 (286)
T 3myb_A          103 KLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRNVGRKAAFE  181 (286)
T ss_dssp             HHHHHHHHHHHHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCC-CHHHHHHHTTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCC-CchHHHHHHHHcCHHHHHH
Confidence            112235677889999999999999999999999999999999999999999999999999 7888999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |+++|+.++|+||+++||||+|+|.+++.+.+.++|++|+
T Consensus       182 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  221 (286)
T 3myb_A          182 MLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIV  221 (286)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999886

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=100.00  E-value=3.1e-47  Score=335.64  Aligned_cols=198  Identities=26%  Similarity=0.393  Sum_probs=176.7

Q ss_pred             CcceEEEEEEecCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc
Q 024304           67 EFTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~ln-rp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~  145 (269)
                      .|+.|.+++  +++|++|+|| ||+++|+||.+|+.+|.+++++++.|+. ++|||+|.| ++||+|+|++++.......
T Consensus         3 ~~~~i~~~~--~~~v~~itln~rp~~~Nal~~~~~~~L~~al~~~~~d~~-r~vvltg~g-~~F~aG~Dl~~~~~~~~~~   78 (261)
T 2gtr_A            3 RYRDIVVRK--QDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDS-KLVLLSAVG-SVFCCGLDFIYFIRRLTDD   78 (261)
T ss_dssp             CCSSEEEEE--ETTEEEEEECCSSSSTTEECHHHHHHHHHHHHHHHHSSC-SCEEEEESS-SCSBCEECHHHHHHHHHHC
T ss_pred             ccceEEEEE--eCCEEEEEECCCCccCCCCCHHHHHHHHHHHHHHhcCCC-EEEEEecCC-CccccccCchhhhhccccc
Confidence            567789998  8999999999 6999999999999999999999999875 999999998 7999999998864311000


Q ss_pred             h-hh--hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhC
Q 024304          146 Y-EN--FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVG  222 (269)
Q Consensus       146 ~-~~--~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G  222 (269)
                      . ..  .....+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG  158 (261)
T 2gtr_A           79 RKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMG  158 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHC
T ss_pred             hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcC
Confidence            0 00  01112456778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       223 ~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ..++++|+++|+.++|+||+++||||+|+|.+++.+.+.+++++|+
T Consensus       159 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  204 (261)
T 2gtr_A          159 GASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELA  204 (261)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCcccccChhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999886

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=100.00  E-value=5.7e-48  Score=342.55  Aligned_cols=197  Identities=28%  Similarity=0.422  Sum_probs=171.8

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc----
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY----  143 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~----  143 (269)
                      ++.|.+++  +++|++|+||||+++|+||.+|+.+|.++++.+++|+++++|||+|.| ++||+|+|++++.....    
T Consensus        10 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~   86 (274)
T 3tlf_A           10 FDTIKYEV--DGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTG-RAFCSGADVKEIPEDGKVIYE   86 (274)
T ss_dssp             CSSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TEEECCBC-------------
T ss_pred             CCceEEEE--ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCC-CCcccCcCHHHHhhccccccc
Confidence            35789999  999999999999999999999999999999999999999999999999 79999999998754322    


Q ss_pred             ---cchhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhh
Q 024304          144 ---ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL  220 (269)
Q Consensus       144 ---~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~  220 (269)
                         ........ .+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++| +|++++|+++
T Consensus        87 ~~~~~~~~~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L~r~  164 (274)
T 3tlf_A           87 RPYLSTYDQWE-APQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRVSRV  164 (274)
T ss_dssp             -CTTCSGGGGS-CCCTTCCCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHHTTT
T ss_pred             cchhhHHHHHH-HHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHHHHH
Confidence               00011111 223456678899999999999999999999999999999999999999999999999 9999999999


Q ss_pred             hCHHHHHHHHHcCC--CCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          221 VGPKKAREMWFLAR--FYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       221 ~G~~~a~~l~ltg~--~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      +|..++++|+++|+  .++|+||+++||||+|+|.+++++++.++|++|+.
T Consensus       165 vG~~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~  215 (274)
T 3tlf_A          165 LPRSIALRMALMGKHERMSAQRAYELGLISEIVEHDRLLERAHEIADIVNS  215 (274)
T ss_dssp             SCHHHHHHHHHHGGGCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHT
T ss_pred             hCHHHHHHHHHcCCCCccCHHHHHHCCCCCeecCHHHHHHHHHHHHHHHHh
Confidence            99999999999999  99999999999999999999999999999999863

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=100.00  E-value=2.1e-47  Score=347.53  Aligned_cols=200  Identities=25%  Similarity=0.321  Sum_probs=172.2

Q ss_pred             CCCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc
Q 024304           64 SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY  143 (269)
Q Consensus        64 ~~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~  143 (269)
                      ...+|+.|.+++  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.....
T Consensus        30 ~~~~~~~i~~e~--~~~Va~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G-~~FcaG~Dl~~~~~~~~  106 (333)
T 3njd_A           30 DFDNLKTMTYEV--TDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRG-EGFCAGFDLSAYAEGSS  106 (333)
T ss_dssp             CTTSCSSEEEEE--ETTEEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEEST-TSSBCCBC---------
T ss_pred             CCCCCCeEEEEE--ECCEEEEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CceecCcCHHHHhhccc
Confidence            346788999999  999999999999999999999999999999999999999999999999 69999999998754221


Q ss_pred             cch----------------------------h-hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeC
Q 024304          144 ADY----------------------------E-NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD  194 (269)
Q Consensus       144 ~~~----------------------------~-~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~  194 (269)
                      ...                            . ......+..++..|.++||||||+|||+|+|||++|+++||+|||++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~  186 (333)
T 3njd_A          107 SAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAA  186 (333)
T ss_dssp             ------CCTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECT
T ss_pred             ccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECC
Confidence            100                            0 00011234556788899999999999999999999999999999999


Q ss_pred             CceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          195 NAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       195 ~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      +++|++||+++|++|+++   +|++++|..++++|+++|+.|+|+||+++||||+|+|.+++++++.++|++|+.
T Consensus       187 ~a~f~~pe~~lG~~P~~g---~l~~~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~ia~  258 (333)
T 3njd_A          187 DAKIGYPPMRVWGVPAAG---LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAA  258 (333)
T ss_dssp             TCEEECGGGGTTCCCTTC---CHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSSSBCCCGGGHHHHHHHHHHHHHT
T ss_pred             CCeeechhhceeccCHHH---HHHHHHHHHHHHHHHhcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHc
Confidence            999999999999999876   579999999999999999999999999999999999999999999999999873

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=100.00  E-value=5.4e-48  Score=342.37  Aligned_cols=200  Identities=27%  Similarity=0.385  Sum_probs=179.6

Q ss_pred             CCcceEEEEEEecC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc
Q 024304           66 TEFTDIIYEKAVGE-GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA  144 (269)
Q Consensus        66 ~~~~~v~~~~~~~~-gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~  144 (269)
                      ++++.|.+++  ++ +|++|+||||+ +|+||.+|+.+|.++++.+++|+++++|||+|.| ++||+|+|++++......
T Consensus        10 ~~~~~v~~~~--~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~   85 (272)
T 3qk8_A           10 QDFPSLRFEP--GEHGVLNLVLDSPG-LNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEG-KAFSSGGSFELIDETIGD   85 (272)
T ss_dssp             GGCTTEEEEE--CSTTEEEEEECCHH-HHEECHHHHHHHHHHHHHHHHCTTCSEEEEEESS-SCSBCEECHHHHHHHHHC
T ss_pred             CCCCeEEEEE--eCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCeeCCcCHHHHhccccc
Confidence            4567899998  65 89999999999 9999999999999999999999999999999999 799999999987432111


Q ss_pred             chh-hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCH
Q 024304          145 DYE-NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP  223 (269)
Q Consensus       145 ~~~-~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~  223 (269)
                      ... ........+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  165 (272)
T 3qk8_A           86 YEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGM  165 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCH
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCH
Confidence            010 0111224567889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          224 KKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       224 ~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      .++++|+++|+.++|+||+++||||+|+|.+++.+++.++|++|+.
T Consensus       166 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~  211 (272)
T 3qk8_A          166 AKAKYYLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENLAQ  211 (272)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCCcEeeCHhHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999873

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=3.5e-47  Score=340.03  Aligned_cols=200  Identities=27%  Similarity=0.408  Sum_probs=177.8

Q ss_pred             CCCcceEEEEEEecCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc
Q 024304           65 GTEFTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY  143 (269)
Q Consensus        65 ~~~~~~v~~~~~~~~gv~~I~ln-rp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~  143 (269)
                      ..+|+.|.++.  +++|++|+|| ||+++|+||.+|+.+|.+++++++.|+. ++|||+|.| ++||+|+|++++.....
T Consensus        19 ~~~~~~v~~~~--~~~v~~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~-r~vVltg~G-~~FcaG~Dl~~~~~~~~   94 (291)
T 2fbm_A           19 SSTYRDIVVKK--EDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAAG-SVFCCGLDFGYFVKHLR   94 (291)
T ss_dssp             --CCSSEEEEE--CSSEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSC-SEEEEEECS-SCSBCCBCHHHHHHHHH
T ss_pred             CCCcceEEEEE--eCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEECCC-CCccCCcCHHHHHhccc
Confidence            56778899999  9999999999 6999999999999999999999999875 999999998 79999999988643110


Q ss_pred             cc-hhhh--hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhh
Q 024304          144 AD-YENF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL  220 (269)
Q Consensus       144 ~~-~~~~--~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~  220 (269)
                      .. ....  ....+.+++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~  174 (291)
T 2fbm_A           95 NNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKM  174 (291)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHH
Confidence            00 0000  11124567778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       221 ~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +|..++++|++||+.++|+||+++||||+|+|++++.+++.++|++|+
T Consensus       175 vG~~~A~el~ltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la  222 (291)
T 2fbm_A          175 MGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELA  222 (291)
T ss_dssp             HCHHHHHHHHTSCCEEEHHHHHHTTSCSEEECSTTSHHHHHHHHHHHT
T ss_pred             HhHHHHHHHHHcCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999986

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=100.00  E-value=7e-47  Score=336.54  Aligned_cols=199  Identities=17%  Similarity=0.176  Sum_probs=175.9

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCC--cc
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG--YA  144 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~--~~  144 (269)
                      .|+.|.+++  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++....  ..
T Consensus         7 ~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~   83 (280)
T 1pjh_A            7 QNEKISYRI--EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSG-RFFSSGADFKGIAKAQGDDT   83 (280)
T ss_dssp             CBTTEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TBSBCCBCHHHHHC------
T ss_pred             cCCceEEEE--ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCCcCHHHHhhcccccc
Confidence            467799999  899999999999999999999999999999999999999999999998 7999999998864311  00


Q ss_pred             --chh---hhhh---hhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEe-CCceEecCCCCcccCCCChHHH
Q 024304          145 --DYE---NFGR---LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSS  215 (269)
Q Consensus       145 --~~~---~~~~---~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~-~~a~f~~~~~~~Gl~p~~g~~~  215 (269)
                        ...   .+..   .....++..+.++|||+||+|||+|+|||++|+++||+||++ ++++|++||+++|++|++|+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~  163 (280)
T 1pjh_A           84 NKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTV  163 (280)
T ss_dssp             -CCSSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHH
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHH
Confidence              000   0110   112466778999999999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCC-----cHHHHHH-HHHHhhc
Q 024304          216 IMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVS-----LFVAYLM-SLTKCQA  268 (269)
Q Consensus       216 ~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e-----~l~~~a~-~la~~la  268 (269)
                      +|++++|..++++|++||+.++|+||+++||||+|+|.+     ++.+.+. +++++|+
T Consensus       164 ~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~~a~~~~a~~la  222 (280)
T 1pjh_A          164 SLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVK  222 (280)
T ss_dssp             HHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCHHHHHHHHHhCCCCCHHHHHHCCCcceeeCCccccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999986     7888884 8998886

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=100.00  E-value=4.1e-47  Score=337.81  Aligned_cols=200  Identities=33%  Similarity=0.420  Sum_probs=170.0

Q ss_pred             CCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc
Q 024304           65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA  144 (269)
Q Consensus        65 ~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~  144 (269)
                      ...|+.|.+++  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++......
T Consensus        16 ~~~~~~v~~~~--~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~~~~   92 (279)
T 3t3w_A           16 QRTEMYIDYDV--SDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANG-KHFSAGHDLRGGGPVPDK   92 (279)
T ss_dssp             ---CCSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECS-SCSBCCBCCC--------
T ss_pred             cccCCeEEEEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CceeeccChHhhhhcccc
Confidence            34567899999  999999999999999999999999999999999999999999999999 799999999987543211


Q ss_pred             -c-hhhhh--hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhh
Q 024304          145 -D-YENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL  220 (269)
Q Consensus       145 -~-~~~~~--~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~  220 (269)
                       . .....  ...+.++...+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|+.| +++... +++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~~-~~~~~~-~~~  170 (279)
T 3t3w_A           93 LTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDIGG-VEYHGH-TWE  170 (279)
T ss_dssp             CCHHHHHHHHHHHTHHHHHHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTCSS-CSSCCH-HHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCCCC-chHHHH-Hhh
Confidence             1 11111  11234567789999999999999999999999999999999999999999999999944 433433 999


Q ss_pred             hCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       221 ~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      +|..++++|+++|++++|+||+++||||+|+|.+++.+.+.++|++|+.
T Consensus       171 vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~  219 (279)
T 3t3w_A          171 LGPRKAKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEIAK  219 (279)
T ss_dssp             HCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHcCCccCHHHHHHCCCCcEeeChHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999873

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=100.00  E-value=3.4e-47  Score=337.74  Aligned_cols=199  Identities=27%  Similarity=0.380  Sum_probs=176.3

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccC-C-c--
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRD-G-Y--  143 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~-~-~--  143 (269)
                      |+.|.+++. +++|++|+||||+++|+||.+|+.+|.++++.+++|+++++|||+|.| ++||+|+|++++... . .  
T Consensus         2 ~~~v~~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~~   79 (275)
T 1dci_A            2 YESIQVTSA-QKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAG-KMFTSGIDLMDMASDILQPPG   79 (275)
T ss_dssp             CSSEEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEEST-TCSBCCBCHHHHHHHHTSCCC
T ss_pred             CceEEEEEc-CCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcChHHHhhccccccc
Confidence            456788863 578999999999999999999999999999999999999999999998 799999999886431 0 0  


Q ss_pred             cch----hhhh--hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHH
Q 024304          144 ADY----ENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIM  217 (269)
Q Consensus       144 ~~~----~~~~--~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l  217 (269)
                      ...    ....  ...+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l  159 (275)
T 1dci_A           80 DDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRL  159 (275)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHG
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHH
Confidence            000    0010  1124466778899999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhCH-HHHHHHHHcCCCCCHHHHHHcCccceecCC-CcHHHHHHHHHHhhc
Q 024304          218 SRLVGP-KKAREMWFLARFYTAEEAEKMGLVNTVVPV-SLFVAYLMSLTKCQA  268 (269)
Q Consensus       218 ~r~~G~-~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~-e~l~~~a~~la~~la  268 (269)
                      ++++|. .++++|++||+.++|+||+++||||+|+|. +++.+.+.++|++|+
T Consensus       160 ~r~vG~~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la  212 (275)
T 1dci_A          160 PKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADIS  212 (275)
T ss_dssp             GGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHcCCCCCHHHHHHcCCcceecCChHHHHHHHHHHHHHHH
Confidence            999999 999999999999999999999999999999 999999999999886

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=100.00  E-value=3.2e-47  Score=337.94  Aligned_cols=195  Identities=26%  Similarity=0.280  Sum_probs=176.5

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh-
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE-  147 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~-  147 (269)
                      ..|.+++  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++......... 
T Consensus        28 ~~v~~~~--~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~  104 (276)
T 3rrv_A           28 TEIDVRA--DGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAG-RAFSAGGDFGYLKELSADADLR  104 (276)
T ss_dssp             TTEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCHHHHHHHHHCHHHH
T ss_pred             CeEEEEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CcccCCcCHHHHhhcccchHHH
Confidence            4688998  999999999999999999999999999999999999999999999999 799999999987532111010 


Q ss_pred             hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHH
Q 024304          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR  227 (269)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~  227 (269)
                      ......+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+++
T Consensus       105 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~  184 (276)
T 3rrv_A          105 AKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAK  184 (276)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGGGTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHHHHhCHHHHH
Confidence            11112345778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          228 EMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       228 ~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +|+++|+.++|+||+++||||+|+  +++.+++.++|++|+
T Consensus       185 ellltG~~i~A~eA~~~GLv~~vv--~~l~~~a~~~A~~la  223 (276)
T 3rrv_A          185 EYALTGTRISAQRAVELGLANHVA--DDPVAEAIACAKKIL  223 (276)
T ss_dssp             HHHHHCCCEEHHHHHHHTSCSEEE--SSHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCHHHHHHcCCHHHHH--HHHHHHHHHHHHHHH
Confidence            999999999999999999999999  999999999999886

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=3.4e-47  Score=335.89  Aligned_cols=197  Identities=23%  Similarity=0.320  Sum_probs=175.4

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccC-C-ccc
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRD-G-YAD  145 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~-~-~~~  145 (269)
                      |..|.+++. +++|++|+||||+ +|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++ +... . ...
T Consensus         9 ~~~v~~~~~-~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~-~~~~~~~~~~   84 (264)
T 1wz8_A            9 YPGLAFAWP-RPGVLEITFRGEK-LNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEG-GVFSAGGSFG-LIEEMRASHE   84 (264)
T ss_dssp             CTTEEEEEE-ETTEEEEEECCSG-GGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGG-GCCBCCBCHH-HHHHHHHCHH
T ss_pred             CCeEEEEEc-cCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCCcccCccc-cccccccchH
Confidence            345777763 5899999999999 9999999999999999999999999999999998 7999999998 6431 1 000


Q ss_pred             hhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHH
Q 024304          146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK  225 (269)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~  225 (269)
                      ........+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus        85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  164 (264)
T 1wz8_A           85 ALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAK  164 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHHH
Confidence            00011123456778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          226 AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +++|+++|+.++|+||+++||||+|+|.+++.+.+.+++++|+
T Consensus       165 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  207 (264)
T 1wz8_A          165 AKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLA  207 (264)
T ss_dssp             HHHHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCHHHHHHCCCceeecChhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999886

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=100.00  E-value=9.4e-47  Score=332.37  Aligned_cols=196  Identities=20%  Similarity=0.312  Sum_probs=175.7

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~  148 (269)
                      ..+.++.  +++|++|+||||+ +|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++..........
T Consensus         5 v~v~~~~--~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~   81 (260)
T 1sg4_A            5 VLVEPDA--GAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAG   81 (260)
T ss_dssp             EEEEEET--TTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHH
T ss_pred             EEEEEEe--cCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccCHHHHHH
Confidence            4566776  8999999999997 699999999999999999999999999999999557999999999875321111111


Q ss_pred             hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEe--CCceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA--DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA  226 (269)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~--~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a  226 (269)
                      . ...+..++..+.++|||+||+|||+|+|||++|+++||+||++  ++++|++||+++|++|++|++++|++++|..++
T Consensus        82 ~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  160 (260)
T 1sg4_A           82 Y-WKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAA  160 (260)
T ss_dssp             H-HHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHH
T ss_pred             H-HHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHHH
Confidence            1 1224567789999999999999999999999999999999999  899999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++|+++|+.++|+||+++||||+|+|.+++.+.+.+++++|+
T Consensus       161 ~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  202 (260)
T 1sg4_A          161 ERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWM  202 (260)
T ss_dssp             HHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcCCHHHHHHcCCCCEecCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999886

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=100.00  E-value=1.3e-46  Score=330.81  Aligned_cols=196  Identities=21%  Similarity=0.312  Sum_probs=176.6

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~  147 (269)
                      ++.|.+++  +++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.........
T Consensus        15 ~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~   91 (257)
T 1szo_A           15 YENIRLER--DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTG-PSFCNEIDFTSFNLGTPHDWD   91 (257)
T ss_dssp             CTTEEEEE--ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TBSBCEECGGGSCCSSHHHHH
T ss_pred             CceEEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCC-CccccCcCchhhhcCCHHHHH
Confidence            45789998  899999999999999999999999999999999999999999999998 699999999987532110001


Q ss_pred             hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEec-CCCCcccCCCChHHHHHHhhhCHHHH
Q 024304          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ-TGPKVGSFDAGYGSSIMSRLVGPKKA  226 (269)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~-~~~~~Gl~p~~g~~~~l~r~~G~~~a  226 (269)
                      .. ...+.+++..+..+|||+||+|||+|+ ||++|+++||+||++++++|++ ||+++|++|++|++++|++++|..++
T Consensus        92 ~~-~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A  169 (257)
T 1szo_A           92 EI-IFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRG  169 (257)
T ss_dssp             HH-HHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHH
T ss_pred             HH-HHHHHHHHHHHHcCCCcEEEEECCchH-HHHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHH
Confidence            11 112456778889999999999999999 5999999999999999999999 99999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++|+++|+.++|+||+++||||+|+|.+++.+.+.++|++|+
T Consensus       170 ~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  211 (257)
T 1szo_A          170 RYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIA  211 (257)
T ss_dssp             HHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999986

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=3.1e-47  Score=336.25  Aligned_cols=195  Identities=28%  Similarity=0.397  Sum_probs=167.7

Q ss_pred             CCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc
Q 024304           65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA  144 (269)
Q Consensus        65 ~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~  144 (269)
                      ...++.|.+++  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++......
T Consensus        11 ~~~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~   87 (265)
T 3qxi_A           11 GDTEPEVLVEQ--RDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAG-GSFCAGMDLKAFARGENV   87 (265)
T ss_dssp             ----CCEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCCCCSBC-------CCC
T ss_pred             CCCCCeEEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCeeCCCChhhhhccchh
Confidence            44677899999  999999999999999999999999999999999999999999999999 699999999987543221


Q ss_pred             chhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHH
Q 024304          145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK  224 (269)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~  224 (269)
                      .... ..  + . +..+.. |||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus        88 ~~~~-~~--~-~-~~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  161 (265)
T 3qxi_A           88 VVEG-RG--L-G-FTERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYA  161 (265)
T ss_dssp             EETT-TE--E-T-TTTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSCHH
T ss_pred             hhhh-hh--h-h-HHHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhCHH
Confidence            1111 00  0 1 223334 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          225 KAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       225 ~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++++|+++|+.++|+||+++||||+|+|.+++.+++.++|++|+
T Consensus       162 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  205 (265)
T 3qxi_A          162 IAMELALTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKIT  205 (265)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcCHHHHHHCCCccEeeChhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999986

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=100.00  E-value=2.4e-47  Score=333.05  Aligned_cols=190  Identities=28%  Similarity=0.424  Sum_probs=172.6

Q ss_pred             EEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhh
Q 024304           71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG  150 (269)
Q Consensus        71 v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~  150 (269)
                      ..+++  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++........    
T Consensus         5 ~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~----   77 (243)
T 2q35_A            5 QLTEL--GNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYG-NYFSSGASKEFLIRKTRGEV----   77 (243)
T ss_dssp             EEEEE--ETTEEEEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TEEECBSCHHHHHHHHTTCC----
T ss_pred             EEEEe--eCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCeeCCCChHHHhhccchhh----
Confidence            44566  899999999999999999999999999999999999999999999998 79999999987642110000    


Q ss_pred             hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHH
Q 024304          151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW  230 (269)
Q Consensus       151 ~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~  230 (269)
                        ...+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..++++|+
T Consensus        78 --~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~  155 (243)
T 2q35_A           78 --EVLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEMI  155 (243)
T ss_dssp             --CCCCCHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHHH
T ss_pred             --HHHHHHHHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHHH
Confidence              012456688899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          231 FLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       231 ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      ++|+.++|+||+++||||+|+|.+++.+.+.+++++++.
T Consensus       156 ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~  194 (243)
T 2q35_A          156 YTGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKIAK  194 (243)
T ss_dssp             HHCCCEEHHHHHHTTCSSCEECHHHHHHHHHHHHHHHTT
T ss_pred             HcCCCCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999863

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=100.00  E-value=1.5e-46  Score=325.80  Aligned_cols=193  Identities=20%  Similarity=0.259  Sum_probs=173.3

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~  148 (269)
                      +.|.+++  +++|++||||||+ +|+||.+|+.+|.++++.++.|+  ++|||||.| ++||+|+|++++....  ....
T Consensus         6 ~~v~~~~--~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~--~~vvltg~g-~~F~aG~Dl~~~~~~~--~~~~   77 (232)
T 3ot6_A            6 DLVSYHL--DDGVATLTLNNGK-VNAISPDVIIAFNAALDQAEKDR--AIVIVTGQP-GILSGGYDLKVMTSSA--EAAI   77 (232)
T ss_dssp             HHEEEEE--ETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHHTT--CEEEEECBT-EEEECCBCHHHHHHCH--HHHH
T ss_pred             cceEEEE--ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCC--CEEEEECCC-CCccCCcCHHHHhhCh--HHHH
Confidence            4688998  9999999999985 69999999999999999999874  899999998 7999999999876421  1111


Q ss_pred             hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC-ceEecCCCCcccCCCChHHHHHHhhhCHHHHH
Q 024304          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR  227 (269)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~  227 (269)
                      ........++..+.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|++|++++++++++++|..+++
T Consensus        78 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~a~  157 (232)
T 3ot6_A           78 NLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFN  157 (232)
T ss_dssp             HHHHHHHHHHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHHHHH
Confidence            11123456788999999999999999999999999999999999998 89999999999999888999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          228 EMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       228 ~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      +|+++|+.++|+||+++||||+|+|.+++.+++.++|++|+.
T Consensus       158 ~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~  199 (232)
T 3ot6_A          158 RSVINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQLKK  199 (232)
T ss_dssp             HHHTSCCEECHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTT
T ss_pred             HHHHcCCccCHHHHHHCCCCCEecCHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999873

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=100.00  E-value=5e-47  Score=333.39  Aligned_cols=190  Identities=29%  Similarity=0.419  Sum_probs=172.9

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~  148 (269)
                      ++|.+++  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++..........
T Consensus         7 ~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~   83 (256)
T 3trr_A            7 DEVLIEQ--RDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAG-GNFCAGMDLKAFVSGEAVLSER   83 (256)
T ss_dssp             CSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGG-GCCCCCBCHHHHHHTCCCEETT
T ss_pred             CceEEEE--ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CceecCcCHHHhccccchhhhh
Confidence            4689999  999999999999999999999999999999999999999999999999 6999999999875432211111


Q ss_pred             hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHH
Q 024304          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE  228 (269)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~  228 (269)
                        .+   .+ ..+ .+|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..++++
T Consensus        84 --~~---~~-~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~  156 (256)
T 3trr_A           84 --GL---GF-TNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAME  156 (256)
T ss_dssp             --EE---TT-SSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHHHH
T ss_pred             --hh---hH-HHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHHHH
Confidence              11   11 233 899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          229 MWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       229 l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |+++|+.++|+||+++||||+|+|.+++.+++.++|++|+
T Consensus       157 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  196 (256)
T 3trr_A          157 LALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKIT  196 (256)
T ss_dssp             HHHHCCCEEHHHHGGGTCCSEEECTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCCcCHHHHHHCCCeeEecChHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999986

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=100.00  E-value=1.8e-46  Score=331.58  Aligned_cols=195  Identities=22%  Similarity=0.299  Sum_probs=168.9

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc-c
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA-D  145 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~-~  145 (269)
                      +++.|.+++  +++|++||||||+++|+||.+|+.+|.++++.++.| ++++|||||.| ++||+|+|++++...... .
T Consensus         5 ~~~~i~~~~--~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~   80 (267)
T 3hp0_A            5 TYQTIKVRF--QASVCYITFHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLP-EVFCFGADFQEIYQEMKRGR   80 (267)
T ss_dssp             CCSSEEEEE--ETTEEEEEECCGGGTTCBCSHHHHHHHHHHHHHHHS-SCCEEEEECCS-SCSBCCBCHHHHHHTTTTTC
T ss_pred             CCceEEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhcC-CCEEEEEECCC-CceecCcCHHHHHhcccChH
Confidence            467899999  999999999999999999999999999999999986 59999999998 799999999987542110 0


Q ss_pred             hhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHH
Q 024304          146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK  225 (269)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~  225 (269)
                      ........+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +.+|++++|..+
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~  159 (267)
T 3hp0_A           81 KQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACV-LPFLIRRIGRQK  159 (267)
T ss_dssp             CSCCCCHHHHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTT-HHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhH-HHHHHHHhCHHH
Confidence            1011112356778899999999999999999999999999999999999999999999999999875 778999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          226 AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |++|+++|+.++|+||+++||||+|+|.++  +.+.+++++|+
T Consensus       160 A~ellltg~~i~A~eA~~~GLV~~vv~~~~--~~~~~~a~~la  200 (267)
T 3hp0_A          160 AHYMTLMTKPISVQEASEWGLIDAFDAESD--VLLRKHLLRLR  200 (267)
T ss_dssp             HHHHHHHCCCBCHHHHHHHTSSSCBCSCTT--HHHHHHHHHHT
T ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCCHH--HHHHHHHHHHH
Confidence            999999999999999999999999998643  23556666665

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=100.00  E-value=3.2e-46  Score=327.90  Aligned_cols=192  Identities=22%  Similarity=0.345  Sum_probs=173.0

Q ss_pred             eEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhh
Q 024304           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF  149 (269)
Q Consensus        70 ~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~  149 (269)
                      .|.+++  +++|++|+||||+++|+||.+|+.+|.++++.+++ +++++|||+|.| ++||+|+|++++....... ...
T Consensus         8 ~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~-~~~   82 (254)
T 3isa_A            8 PLAIER--RPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGAG-RNFSAGFDFTDYETQSEGD-LLL   82 (254)
T ss_dssp             SEEEEE--CSSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEEST-TCSCCCBCCTTCTTSCHHH-HHH
T ss_pred             eEEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECCC-CceeeCcChHHhhccCchh-HHH
Confidence            389998  99999999999999999999999999999999987 589999999998 7999999999875432211 111


Q ss_pred             hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHH
Q 024304          150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREM  229 (269)
Q Consensus       150 ~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l  229 (269)
                      ....+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|   ++++|++++|..++++|
T Consensus        83 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p---g~~~l~~~vG~~~A~~l  159 (254)
T 3isa_A           83 RMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRDIVGADQALSI  159 (254)
T ss_dssp             HHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCC---SHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccH---HHHHHHHHcCHHHHHHH
Confidence            112345678899999999999999999999999999999999999999999999999998   47899999999999999


Q ss_pred             HHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          230 WFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       230 ~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      +++|+.++|+||+++||||+|+|.+++++.+.+++++++.
T Consensus       160 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~  199 (254)
T 3isa_A          160 LGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATA  199 (254)
T ss_dssp             HTTTCEEEHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTT
T ss_pred             HHhCCCCcHHHHHHCCCccEEeChhHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999873

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=8.4e-47  Score=331.39  Aligned_cols=189  Identities=33%  Similarity=0.518  Sum_probs=170.5

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc-cchhhhhhhh-HH
Q 024304           78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-ADYENFGRLN-VL  155 (269)
Q Consensus        78 ~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~-~~~~~~~~~~-~~  155 (269)
                      +++|++|+||||+++|+||.+|+.+|.++++.+++|+++++|||+|.| ++||+|+|++++..... .......... +.
T Consensus         6 ~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   84 (253)
T 1uiy_A            6 KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRG-KAFSAGADLAFLERVTELGAEENYRHSLSLM   84 (253)
T ss_dssp             CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             eCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCcccCcChHHHHhcccCCchhHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999998 79999999988653200 0111111111 55


Q ss_pred             HHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCC
Q 024304          156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF  235 (269)
Q Consensus       156 ~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~  235 (269)
                      +++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++| +++|++++|..++++|+++|+.
T Consensus        85 ~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~a~~l~ltg~~  163 (253)
T 1uiy_A           85 RLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV-SVILVRAVGEKAAKDLLLTGRL  163 (253)
T ss_dssp             HHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHH-HHHHHHHSCHHHHHHHHHHCCE
T ss_pred             HHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchH-HHHHHHHhCHHHHHHHHHhCCc
Confidence            677889999999999999999999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             CCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          236 YTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       236 i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++|+||+++||||+|+|++++.+.+.+++++|+
T Consensus       164 ~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  196 (253)
T 1uiy_A          164 VEAREAKALGLVNRIAPPGKALEEAKALAEEVA  196 (253)
T ss_dssp             EEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHCCCcceecChhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999886

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2.1e-46  Score=330.43  Aligned_cols=190  Identities=31%  Similarity=0.458  Sum_probs=162.7

Q ss_pred             CCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc
Q 024304           65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA  144 (269)
Q Consensus        65 ~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~  144 (269)
                      .+.+..|.+++  +++|++|+||||+++|+||.+|+.+|.++++++++| ++++|||+|.| ++||+|+|++...   . 
T Consensus        17 ~~~~~~i~~~~--~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G-~~FcaG~Dl~~~~---~-   88 (264)
T 3he2_A           17 QGPGSMIGITQ--AEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQG-TAFCAGADLSGDA---F-   88 (264)
T ss_dssp             -----CEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESS-SCSBCCBCCTTCT---T-
T ss_pred             CCCCCeEEEEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCC-CCccCCcCCccch---h-
Confidence            45677899999  999999999999999999999999999999999988 99999999999 7999999998311   1 


Q ss_pred             chhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHH
Q 024304          145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK  224 (269)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~  224 (269)
                       .... ...+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus        89 -~~~~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  166 (264)
T 3he2_A           89 -AADY-PDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHG  166 (264)
T ss_dssp             -GGGH-HHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHHHHCHH
T ss_pred             -hHHH-HHHHHHHHHHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHHHHHhCHH
Confidence             1111 12355678889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          225 KAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       225 ~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++++|+++|+.++|+||+++||||+|++.++    +.++|++|+
T Consensus       167 ~A~~llltG~~i~A~eA~~~GLV~~v~~~~~----a~~~A~~la  206 (264)
T 3he2_A          167 RARAMLLSAEKLTAEIALHTGMANRIGTLAD----AQAWAAEIA  206 (264)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEECCHHH----HHHHHHHHH
T ss_pred             HHHHHHHcCCCccHHHHHHCCCeEEEecHHH----HHHHHHHHH
Confidence            9999999999999999999999999998544    455555543

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=100.00  E-value=4.3e-46  Score=329.34  Aligned_cols=194  Identities=25%  Similarity=0.382  Sum_probs=169.8

Q ss_pred             ceEEEE----EEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCcc
Q 024304           69 TDIIYE----KAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA  144 (269)
Q Consensus        69 ~~v~~~----~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~  144 (269)
                      ..+.|+    .  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++......
T Consensus         7 ~~v~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~   83 (267)
T 3oc7_A            7 ALVDYAGPAAT--GGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTG-GTFCAGADLSEAGSGGSP   83 (267)
T ss_dssp             SSEEEECHHHH--SSSEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECS-SEEECCBC----------
T ss_pred             cccCCCCccce--eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CceeCCcCchhhhhccCc
Confidence            568888    7  899999999999999999999999999999999999999999999999 599999999987521111


Q ss_pred             chh----hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhh
Q 024304          145 DYE----NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL  220 (269)
Q Consensus       145 ~~~----~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~  220 (269)
                      ...    ......+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++ +
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-~  162 (267)
T 3oc7_A           84 SSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP-K  162 (267)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT-T
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH-H
Confidence            111    01122356778899999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             hCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       221 ~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +|..++++|+++|+.++|+||+++||||+|  .+++++++.+++++|+
T Consensus       163 vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v--~~~l~~~a~~~a~~la  208 (267)
T 3oc7_A          163 LSARAAARYYLTGEKFDARRAEEIGLITMA--AEDLDAAIDQLVTDVG  208 (267)
T ss_dssp             SCHHHHHHHHHHCCCBCHHHHHHHTSSSEE--CSSHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHcCCccCHHHHHHCCChhhh--hHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999  8999999999999986

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=100.00  E-value=2.9e-46  Score=331.30  Aligned_cols=202  Identities=26%  Similarity=0.422  Sum_probs=173.9

Q ss_pred             CCcceEEEEEE--ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc
Q 024304           66 TEFTDIIYEKA--VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY  143 (269)
Q Consensus        66 ~~~~~v~~~~~--~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~  143 (269)
                      .+..++.++..  .+++|++|+||||+++|+||.+|+.+|.++++.+++|+++++|||+|.|+++||+|+|++++.....
T Consensus         5 ~~~~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~   84 (272)
T 1hzd_A            5 KTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSS   84 (272)
T ss_dssp             --CCSEEEEECCGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCH
T ss_pred             cCCCcEEEEecccccCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccCh
Confidence            34455656531  1689999999999999999999999999999999999999999999998779999999998753221


Q ss_pred             cchhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCH
Q 024304          144 ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP  223 (269)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~  223 (269)
                      .....+ ...+..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        85 ~~~~~~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~  163 (272)
T 1hzd_A           85 SEVGPF-VSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGM  163 (272)
T ss_dssp             HHHHHH-HHHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCH
T ss_pred             HHHHHH-HHHHHHHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhCH
Confidence            111111 1234567788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCccceecCCCcH----HHHHHHHHHhhc
Q 024304          224 KKAREMWFLARFYTAEEAEKMGLVNTVVPVSLF----VAYLMSLTKCQA  268 (269)
Q Consensus       224 ~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l----~~~a~~la~~la  268 (269)
                      .++++|+++|+.++|+||+++||||+|+|.+++    .+.+.+++++++
T Consensus       164 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~~~~~a~~~a~~la  212 (272)
T 1hzd_A          164 SLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFL  212 (272)
T ss_dssp             HHHHHHHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHcCCcCCHHHHHHCCCcceecChhhhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999875    456777777765

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=100.00  E-value=1.7e-46  Score=330.80  Aligned_cols=197  Identities=34%  Similarity=0.508  Sum_probs=173.1

Q ss_pred             cceEEEEEE-ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304           68 FTDIIYEKA-VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (269)
Q Consensus        68 ~~~v~~~~~-~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~  146 (269)
                      |+.+.++.. ..++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.....  .
T Consensus         3 ~~~~~~~~~v~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~--~   79 (260)
T 1mj3_A            3 FQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGE-KAFAAGADIKEMQNRTF--Q   79 (260)
T ss_dssp             CSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCS-SEEECCBCHHHHTTCCH--H
T ss_pred             cccceeecccCcCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCC-CCccCCcChHhhhcccc--h
Confidence            455666652 1578999999999999999999999999999999999999999999998 79999999988643211  1


Q ss_pred             hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA  226 (269)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a  226 (269)
                      ... ...+...+..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus        80 ~~~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  158 (260)
T 1mj3_A           80 DCY-SGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLA  158 (260)
T ss_dssp             HHH-HC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHHH
T ss_pred             HHH-HHHHHHHHHHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence            111 1111122457789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++|+++|+.++|+||+++||||+|+|.+++.+.+.+++++|+
T Consensus       159 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  200 (260)
T 1mj3_A          159 MEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIA  200 (260)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcCCHHHHHHcCCccEEeChHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999876

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=100.00  E-value=5.3e-46  Score=334.48  Aligned_cols=197  Identities=22%  Similarity=0.251  Sum_probs=168.9

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCC----CCCCCHHHHHHHHHHHHHhhc-----CCCceEEEEEcCCCCceeccccccccc
Q 024304           69 TDIIYEKAVGEGIAKITINRPDR----RNAFRPHTVKELIRAFNDARD-----DSSVGVIILTGKGTEAFCSGGDQALRT  139 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~----~Nal~~~~~~~L~~al~~~~~-----d~~~~vvVl~g~g~~~Fc~G~Dl~~~~  139 (269)
                      ..|.++.  +++|++|+||||+|    +|+||.+|+.+|.++|+.++.     |+++++|||+|.| ++||+|+|++++.
T Consensus        32 i~v~~~~--~~~V~~itLnrp~k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G-~~FcaG~Dl~~~~  108 (305)
T 3m6n_A           32 LRIIEEP--QRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDS-DVFNLGGDLALFC  108 (305)
T ss_dssp             EEEEEET--TTTEEEEEECTTC-----CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESS-SSSBCCBCHHHHH
T ss_pred             EEEEEEE--ECCEEEEEECCccccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCC-CCeecCcCHHHHH
Confidence            3445566  89999999999998    559999999999999999987     5899999999988 7999999999875


Q ss_pred             cCCcc-chhhhh--hhhHHHHHHHH---hcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChH
Q 024304          140 RDGYA-DYENFG--RLNVLDLQVQI---RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYG  213 (269)
Q Consensus       140 ~~~~~-~~~~~~--~~~~~~l~~~i---~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~  213 (269)
                      ..... ......  ...+...+..+   ..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~  188 (305)
T 3m6n_A          109 QLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGA  188 (305)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSH
T ss_pred             hccccccHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCccH
Confidence            32110 011111  11122333333   4689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          214 SSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       214 ~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +++|++++|..++++|+++|+.++|+||+++||||+|+|.+++++++.++|++|+
T Consensus       189 ~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  243 (305)
T 3m6n_A          189 YSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESK  243 (305)
T ss_dssp             HHHHTTTSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcHHHHHHHHHcCCCCCHHHHHHCCCCCEecChhHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999986

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=100.00  E-value=2.7e-45  Score=337.16  Aligned_cols=191  Identities=21%  Similarity=0.330  Sum_probs=169.5

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccC---Cccc
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRD---GYAD  145 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~---~~~~  145 (269)
                      ..|.+++  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++...   ....
T Consensus         6 ~~v~~~~--~~~v~~itLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~~   83 (363)
T 3bpt_A            6 EEVLLGK--KGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKI   83 (363)
T ss_dssp             CSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCC
T ss_pred             cceEEEE--ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccHH
Confidence            4588888  8999999999999999999999999999999999999999999999987799999999886431   1100


Q ss_pred             hhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHH
Q 024304          146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK  225 (269)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~  225 (269)
                      .... ......+...+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. +
T Consensus        84 ~~~~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~-~  161 (363)
T 3bpt_A           84 APVF-FREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGK-L  161 (363)
T ss_dssp             HHHH-HHHHHHHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTT-H
T ss_pred             HHHH-HHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHH-H
Confidence            1111 1123456778999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHH
Q 024304          226 AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSL  263 (269)
Q Consensus       226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~l  263 (269)
                      +++|++||++++|+||+++||||+|+|.+++.+.+..+
T Consensus       162 a~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l  199 (363)
T 3bpt_A          162 GYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDL  199 (363)
T ss_dssp             HHHHHHHCCCEETHHHHHTTSCSEECCGGGHHHHHHHH
T ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCHHHHHHHHHHH
Confidence            99999999999999999999999999999998766554

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=100.00  E-value=1e-45  Score=343.98  Aligned_cols=193  Identities=20%  Similarity=0.268  Sum_probs=171.3

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc---
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY---  143 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~---  143 (269)
                      .++.|.+++  +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++.....   
T Consensus        40 ~~~~v~~~~--~~~V~~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~  117 (407)
T 3ju1_A           40 VFQTLATAS--GKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAK  117 (407)
T ss_dssp             EEEEEECTT--SCEEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHT
T ss_pred             ccceEEEEE--ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhcccccc
Confidence            467788888  999999999999999999999999999999999999999999999999779999999998753210   


Q ss_pred             ---cchhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhh
Q 024304          144 ---ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL  220 (269)
Q Consensus       144 ---~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~  220 (269)
                         ...........+.+...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|+
T Consensus       118 ~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~rl  197 (407)
T 3ju1_A          118 GQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRM  197 (407)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTS
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhhh
Confidence               00011111123467788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHH
Q 024304          221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMS  262 (269)
Q Consensus       221 ~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~  262 (269)
                      +| .++++|++||++|+|+||+++||||+|+|.+++.+..++
T Consensus       198 ~g-~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~  238 (407)
T 3ju1_A          198 PG-KMGLFLGLTAYHMNAADACYVGLADHYLNRDDKELMFDA  238 (407)
T ss_dssp             ST-THHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHH
T ss_pred             hH-HHHHHHHHcCCcCcHHHHHHCCCccEEcCHHHHHHHHHH
Confidence            99 899999999999999999999999999999999884433

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=100.00  E-value=6.3e-45  Score=339.62  Aligned_cols=199  Identities=27%  Similarity=0.359  Sum_probs=172.2

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcC--------CCCceecccccccc
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK--------GTEAFCSGGDQALR  138 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~--------g~~~Fc~G~Dl~~~  138 (269)
                      +++.|.++.  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.        |+++||+|+|++++
T Consensus       165 ~~~~v~~e~--~~gVa~ItLNRP~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~  242 (440)
T 2np9_A          165 EMEAVHLER--RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYL  242 (440)
T ss_dssp             ECSSEEEEE--ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHH
T ss_pred             CCceEEEEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhh
Confidence            345788998  89999999999999999999999999999999999999999999995        54799999999987


Q ss_pred             ccCCccchhh-h-hh-hhHHHHHHHH------------hcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCC
Q 024304          139 TRDGYADYEN-F-GR-LNVLDLQVQI------------RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGP  203 (269)
Q Consensus       139 ~~~~~~~~~~-~-~~-~~~~~l~~~i------------~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~  203 (269)
                      .......... . .. ..+..++..+            ..+||||||+|||+|+|||++|+++||+||++++++|++||+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev  322 (440)
T 2np9_A          243 SQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAA  322 (440)
T ss_dssp             HTTCCCTTTTHHHHHHTHHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCT
T ss_pred             hccCcchhhhhhHHHHHHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchh
Confidence            5422111110 0 00 1122333333            479999999999999999999999999999999999999999


Q ss_pred             CcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          204 KVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       204 ~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++|++|++| +++|++++|..++++|+++|+.|+|+||+++||||+|||.+++++.+.+++++++
T Consensus       323 ~lGl~P~~g-~~~L~rlvG~~~A~ellLtG~~i~A~EA~~~GLV~~Vvp~~eL~~~a~~~A~~la  386 (440)
T 2np9_A          323 KEGIIPGAA-NLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLD  386 (440)
T ss_dssp             TTCCCCTTH-HHHHHHHHHHHHHHHHHHHCCCEETTSGGGGGTCSEEECHHHHHHHHHHHHHTTC
T ss_pred             ccCcCcchH-HHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecChHHHHHHHHHHHHHhC
Confidence            999999886 6899999999999999999999999999999999999999999999999998875

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=100.00  E-value=6e-44  Score=336.72  Aligned_cols=199  Identities=21%  Similarity=0.233  Sum_probs=178.9

Q ss_pred             CCcceEEEEEEecCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHhhcC-CCceEEEEEc-CCCCceeccc
Q 024304           66 TEFTDIIYEKAVGEGIAKITINRPD----------RRNAFRPHTVKELIRAFNDARDD-SSVGVIILTG-KGTEAFCSGG  133 (269)
Q Consensus        66 ~~~~~v~~~~~~~~gv~~I~lnrp~----------~~Nal~~~~~~~L~~al~~~~~d-~~~~vvVl~g-~g~~~Fc~G~  133 (269)
                      ..+++|.++.  +++|++|+||||+          ++|+||.+|+.+|.++++.++.| +++++|||+| .| ++||+|+
T Consensus        18 ~~~~~v~ve~--~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G-~~FcAGa   94 (556)
T 2w3p_A           18 SQYKHWKLSF--NGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKD-RVFCSGA   94 (556)
T ss_dssp             GGCSSEEEEE--ETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSS-SEEECEE
T ss_pred             CcCceEEEEe--eCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCC-CcccCCc
Confidence            3566799998  8999999999998          89999999999999999999999 9999999999 66 7999999


Q ss_pred             cccccccCCccchhhhhhhhHHHHHHHH----hcCCCcEEEEEcCcccccchhhhhcccEEEEeCC--ceEecCCCC-cc
Q 024304          134 DQALRTRDGYADYENFGRLNVLDLQVQI----RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPK-VG  206 (269)
Q Consensus       134 Dl~~~~~~~~~~~~~~~~~~~~~l~~~i----~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~--a~f~~~~~~-~G  206 (269)
                      |++++..........+ ...+..++..+    .++|||+||+|||+|+|||++|+++||+||++++  ++|++||++ +|
T Consensus        95 DL~el~~~~~~~~~~~-~~~~~~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LG  173 (556)
T 2w3p_A           95 NIFMLGLSTHAWKVNF-CKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLG  173 (556)
T ss_dssp             CHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHS
T ss_pred             CHHHHhhcccHHHHHH-HHHHHHHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccC
Confidence            9998754321111111 11245566778    8999999999999999999999999999999999  999999999 99


Q ss_pred             cCCCChHHHHHH--hhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          207 SFDAGYGSSIMS--RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       207 l~p~~g~~~~l~--r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++|++|++++|+  |++|..++++|+++|+.++|+||+++||||+|+|.+++.+.+.++|++|+
T Consensus       174 L~Pg~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVdeVVp~~eL~~~A~~lA~~LA  237 (556)
T 2w3p_A          174 VLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELA  237 (556)
T ss_dssp             SCCTTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHhhccCCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChhHHHHHHHHHHHHHH
Confidence            999999999999  99999999999999999999999999999999999999999999999986

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=2.5e-42  Score=341.45  Aligned_cols=181  Identities=26%  Similarity=0.432  Sum_probs=167.6

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHH
Q 024304           78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL  157 (269)
Q Consensus        78 ~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l  157 (269)
                      +++|++||||||+ .|+||.+|+.+|.+++++++.|+++++|||||.| +.||+|+|++++......       ..+.++
T Consensus        28 ~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aGaDl~~~~~~~~~-------~~~~~~   98 (742)
T 3zwc_A           28 PHSLAMIRLCNPP-VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGAN-GNFCAGADIHGFSAFTPG-------LALGSL   98 (742)
T ss_dssp             STTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEEST-TCSBCCBCSSSCCSSCSC-------SHHHHH
T ss_pred             eCCEEEEEeCCCc-ccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CccccCcChHhhhccChh-------HHHHHH
Confidence            8999999999997 5999999999999999999999999999999998 699999999987643221       124567


Q ss_pred             HHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCC
Q 024304          158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT  237 (269)
Q Consensus       158 ~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~  237 (269)
                      +..|.+++||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|++||+.++
T Consensus        99 ~~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~~l~ltG~~i~  178 (742)
T 3zwc_A           99 VDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLS  178 (742)
T ss_dssp             HHHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCCEE
T ss_pred             HHHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHHHHHHHHHcCCchh
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          238 AEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       238 a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      |+||+++||||+|+|.|.+ +++.++|++++
T Consensus       179 a~eA~~~GLv~~vv~~d~~-~~A~~~A~~ia  208 (742)
T 3zwc_A          179 ADEALRLGILDAVVKSDPV-EEAIKFAQKII  208 (742)
T ss_dssp             HHHHHHHTSCSEEESSCHH-HHHHHHHHHHT
T ss_pred             HHHHHHcCCccEecCchhh-HHHHHHHHHHh
Confidence            9999999999999998764 67788898886

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=7.9e-42  Score=338.28  Aligned_cols=197  Identities=25%  Similarity=0.342  Sum_probs=176.3

Q ss_pred             ceEEEE-EEecCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304           69 TDIIYE-KAVGEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (269)
Q Consensus        69 ~~v~~~-~~~~~gv~~I~lnrp~-~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~  146 (269)
                      +.+.++ .  +++|++||||||+ +.|+||.+|+.+|.++++.++.|+++++|||+| |.++||+|+|++++........
T Consensus         6 ~~i~~~~~--~~~va~itlnrp~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~   82 (715)
T 1wdk_A            6 KAITVTAL--ESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENFKLPD   82 (715)
T ss_dssp             SSEEEEEC--GGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHTTSCH
T ss_pred             CeEEEEEe--eCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhcccCCH
Confidence            457888 5  8899999999998 899999999999999999999999999999999 7459999999998753211111


Q ss_pred             hhh--hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHH
Q 024304          147 ENF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK  224 (269)
Q Consensus       147 ~~~--~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~  224 (269)
                      ...  ....+.+++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~  162 (715)
T 1wdk_A           83 AELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVD  162 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHH
Confidence            011  112356778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          225 KAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       225 ~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +|++|+++|+.++|+||+++||||+|+|.+++.+.+.+++++++
T Consensus       163 ~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  206 (715)
T 1wdk_A          163 NAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAI  206 (715)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999875

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=6.8e-42  Score=339.04  Aligned_cols=198  Identities=26%  Similarity=0.359  Sum_probs=169.0

Q ss_pred             CcceEEEE-EEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc
Q 024304           67 EFTDIIYE-KAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (269)
Q Consensus        67 ~~~~v~~~-~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~  145 (269)
                      ++..+.++ .  +++|++|||||| +.|+||.+|+.+|.+++++++.|+++++|||+| |.++||+|+|++++.......
T Consensus         5 ~~~~i~~~~~--~~~va~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~   80 (725)
T 2wtb_A            5 TKGKTVMEVG--GDGVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQKGN   80 (725)
T ss_dssp             --CEEEEEEC--TTSEEEEEEECT-TTTCCCHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC----------
T ss_pred             cCCeEEEEEe--eCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccchh
Confidence            34568888 5  899999999999 789999999999999999999999999999999 745999999999874321100


Q ss_pred             h--hhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCH
Q 024304          146 Y--ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP  223 (269)
Q Consensus       146 ~--~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~  223 (269)
                      .  .......+.+++..+.++|||+||+|||.|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~  160 (725)
T 2wtb_A           81 VKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGL  160 (725)
T ss_dssp             --CCSSSHHHHHCCCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCH
T ss_pred             hhhHHHHHHHHHHHHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCH
Confidence            0  00001123344557788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          224 KKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       224 ~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      .+|++|+++|+.++|+||+++||||+|+|.+++.+.+.+++++++
T Consensus       161 ~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la  205 (725)
T 2wtb_A          161 TKALEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIV  205 (725)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEECCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCccceEcChhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999875

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.89  E-value=2.6e-24  Score=208.93  Aligned_cols=170  Identities=21%  Similarity=0.242  Sum_probs=145.4

Q ss_pred             cCCEEEEEEcCCCCCCC--CCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHH
Q 024304           78 GEGIAKITINRPDRRNA--FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVL  155 (269)
Q Consensus        78 ~~gv~~I~lnrp~~~Na--l~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~  155 (269)
                      +++|++|+||+|.+.|+  ++..+.++|.++|+.+++|+++++|||++.+     .|+|+...             ..+.
T Consensus       300 ~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~s-----pGG~~~~~-------------~~i~  361 (593)
T 3bf0_A          300 GDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNS-----PGGSVTAS-------------EVIR  361 (593)
T ss_dssp             SCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEE-----EEECHHHH-------------HHHH
T ss_pred             CCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecC-----CCCCHHHH-------------HHHH
Confidence            67899999999998888  6889999999999999999999999999976     37776541             1134


Q ss_pred             HHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCC------------CcccCCCC------------
Q 024304          156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGP------------KVGSFDAG------------  211 (269)
Q Consensus       156 ~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~------------~~Gl~p~~------------  211 (269)
                      +.+..+..++||||++|+|.|.|||+.|+++||++||++++.|+.+++            ++|+.|+.            
T Consensus       362 ~~i~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~~~~  441 (593)
T 3bf0_A          362 AELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSIT  441 (593)
T ss_dssp             HHHHHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCCCTT
T ss_pred             HHHHHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeecccccccCcC
Confidence            556678889999999999999999999999999999999999999874            57876532            


Q ss_pred             -hHH---------------HHHHhhhCHHH-----HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHH
Q 024304          212 -YGS---------------SIMSRLVGPKK-----AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTK  265 (269)
Q Consensus       212 -g~~---------------~~l~r~~G~~~-----a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~  265 (269)
                       +.+               ..|.+.++..+     +.+++++|+.++|+||+++||||++++.+++.+.+.+++.
T Consensus       442 ~~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~~~~~~~a~~~a~  516 (593)
T 3bf0_A          442 RALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAK  516 (593)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCHHHHHHHHHHHcC
Confidence             122               46778888888     8899999999999999999999999999999988887654

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.85  E-value=4.3e-21  Score=166.67  Aligned_cols=169  Identities=18%  Similarity=0.229  Sum_probs=129.2

Q ss_pred             cCCEEEEEEcCCCCCCCCCHH-------HHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhh
Q 024304           78 GEGIAKITINRPDRRNAFRPH-------TVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG  150 (269)
Q Consensus        78 ~~gv~~I~lnrp~~~Nal~~~-------~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~  150 (269)
                      +++|++|+++.+=..+.-...       .+.+|.++|+++.+|+++++|||++.     |.|+|+....           
T Consensus         2 ~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~-----s~Gg~~~~~~-----------   65 (240)
T 3rst_A            2 SSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN-----SPGGGVYESA-----------   65 (240)
T ss_dssp             CCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEE-----ECCBCHHHHH-----------
T ss_pred             CCeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEec-----CCCCCHHHHH-----------
Confidence            577999999976432210111       35799999999999999999999986     4587775421           


Q ss_pred             hhhHHHHHHHHhc-CCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecC---------------------CCCcccC
Q 024304          151 RLNVLDLQVQIRR-LPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQT---------------------GPKVGSF  208 (269)
Q Consensus       151 ~~~~~~l~~~i~~-~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~---------------------~~~~Gl~  208 (269)
                        .+.+.+..+.. ++||+||+++|.|.|||+.|+++||++|+++++.|+.+                     ..+.|.+
T Consensus        66 --~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~  143 (240)
T 3rst_A           66 --EIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAH  143 (240)
T ss_dssp             --HHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTT
T ss_pred             --HHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEecccc
Confidence              13445566666 89999999999999999999999999999999999999                     4455655


Q ss_pred             CCChH--------------------------HHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHH
Q 024304          209 DAGYG--------------------------SSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMS  262 (269)
Q Consensus       209 p~~g~--------------------------~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~  262 (269)
                      +..+.                          ...-.|.+.....++ +++|+.+++++|+++||||++.+.+++.+.+.+
T Consensus       144 k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~-~~~g~~~~a~~A~~~GLVD~i~~~~~~~~~~~~  222 (240)
T 3rst_A          144 ADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKK-IADGRVYDGRQAKKLNLVDELGFYDDTITAMKK  222 (240)
T ss_dssp             TTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHH-HCSSCEEEHHHHHHTTSSSEECCHHHHHHHHHH
T ss_pred             ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence            55431                          112234455555554 788999999999999999999999999888887


Q ss_pred             HHH
Q 024304          263 LTK  265 (269)
Q Consensus       263 la~  265 (269)
                      ++.
T Consensus       223 ~~~  225 (240)
T 3rst_A          223 DHK  225 (240)
T ss_dssp             HCG
T ss_pred             HhC
Confidence            764

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.84  E-value=1.9e-20  Score=161.04  Aligned_cols=155  Identities=20%  Similarity=0.221  Sum_probs=128.5

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHH
Q 024304           78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL  157 (269)
Q Consensus        78 ~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l  157 (269)
                      .+.|++|+|+     |+++..+...|.++|+.++++ ++++|||+..     |.|+|+..                ...+
T Consensus         7 ~~~V~vI~i~-----g~I~~~~~~~l~~~l~~a~~~-~~~~Ivl~in-----spGG~v~~----------------~~~i   59 (230)
T 3viv_A            7 KNIVYVAQIK-----GQITSYTYDQFDRYITIAEQD-NAEAIIIELD-----TPGGRADA----------------MMNI   59 (230)
T ss_dssp             CCEEEEEEEE-----SCBCHHHHHHHHHHHHHHHHT-TCSEEEEEEE-----BSCEEHHH----------------HHHH
T ss_pred             CCeEEEEEEe-----CEECHHHHHHHHHHHHHHhcC-CCCEEEEEEe-----CCCcCHHH----------------HHHH
Confidence            5679999998     479999999999999999864 5899999875     45776543                3356


Q ss_pred             HHHHhcCCCcEEEEE---cCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHH---------------HHHHh
Q 024304          158 QVQIRRLPKPVIAMV---AGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGS---------------SIMSR  219 (269)
Q Consensus       158 ~~~i~~~~kP~Ia~v---~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~---------------~~l~r  219 (269)
                      +..|..++||||+.|   +|.|.|+|+.|+++||++++++++.|+.+++..+. |..|.+               ..+++
T Consensus        60 ~~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~~la~  138 (230)
T 3viv_A           60 VQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIKSLAQ  138 (230)
T ss_dssp             HHHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceecC-CCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            678889999999999   99999999999999999999999999999887532 333321               24677


Q ss_pred             hhCH--HHHHHHHHcCCCCCHHHHHHcCccceecCC-CcHHHHH
Q 024304          220 LVGP--KKAREMWFLARFYTAEEAEKMGLVNTVVPV-SLFVAYL  260 (269)
Q Consensus       220 ~~G~--~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~-e~l~~~a  260 (269)
                      ..|.  ..+++++..++.++|+||+++||||+|++. +++.+++
T Consensus       139 ~~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~~~~ll~~~  182 (230)
T 3viv_A          139 ESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELLKKS  182 (230)
T ss_dssp             HTTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSSHHHHHHHH
T ss_pred             HhCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCCHHHHHHHh
Confidence            7885  789999999999999999999999999975 5565554

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.67  E-value=4.5e-16  Score=133.04  Aligned_cols=141  Identities=17%  Similarity=0.180  Sum_probs=109.9

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEc
Q 024304           94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA  173 (269)
Q Consensus        94 al~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~  173 (269)
                      .++.++.+++.+.|..++.++..+.|+|.-     .|.|+++..                ...++..|..+++||++.++
T Consensus        53 ~I~~~~a~~i~~~L~~l~~~~~~k~I~l~I-----nSPGG~v~a----------------g~~I~~~i~~~~~pV~t~v~  111 (218)
T 1y7o_A           53 PVEDNMANSVIAQLLFLDAQDSTKDIYLYV-----NTPGGSVSA----------------GLAIVDTMNFIKADVQTIVM  111 (218)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCTTSCEEEEE-----EECCBCHHH----------------HHHHHHHHHHSSSCEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEE-----ECcCCCHHH----------------HHHHHHHHHhcCCCEEEEEc
Confidence            388999999999999999887778877763     333544332                23456677889999999999


Q ss_pred             CcccccchhhhhcccE--EEEeCCceEecCCCCcccCCCChH------------------HHHHHhhhCH--HHHHHHHH
Q 024304          174 GYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYG------------------SSIMSRLVGP--KKAREMWF  231 (269)
Q Consensus       174 G~a~GgG~~lal~~D~--~ia~~~a~f~~~~~~~Gl~p~~g~------------------~~~l~r~~G~--~~a~~l~l  231 (269)
                      |.|.++|+.|+++||.  |++.+++.|+++++. |.++..|.                  ...+++..|.  ..+++++.
T Consensus       112 G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~-~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~~~  190 (218)
T 1y7o_A          112 GMAASMGTVIASSGAKGKRFMLPNAEYMIHQPM-GGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAE  190 (218)
T ss_dssp             EEEETHHHHHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             cEeHHHHHHHHHcCCcCcEEEcCCcEEEEeccc-ccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence            9999999999999999  999999999999987 43432222                  2456677776  47888999


Q ss_pred             cCCCCCHHHHHHcCccceecCCCcH
Q 024304          232 LARFYTAEEAEKMGLVNTVVPVSLF  256 (269)
Q Consensus       232 tg~~i~a~eA~~~GLv~~vv~~e~l  256 (269)
                      .++.++|+||+++||||+|++.+++
T Consensus       191 ~~~~~ta~EA~e~GLVD~v~~~~~~  215 (218)
T 1y7o_A          191 RDNWMSAQETLEYGFIDEIMANNSL  215 (218)
T ss_dssp             SCCCBCHHHHHHHTSCSEECCCC--
T ss_pred             CCCEEcHHHHHHCCCCcEEcCcCCC
Confidence            9999999999999999999988763

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.64  E-value=1.1e-15  Score=136.67  Aligned_cols=156  Identities=17%  Similarity=0.234  Sum_probs=125.0

Q ss_pred             CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHH
Q 024304           80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQV  159 (269)
Q Consensus        80 gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~  159 (269)
                      .|.++..+..-..|+++..+.+.+.++++.+.++ .+.+|+|++.|      |+|+.+...       .  ...+..+..
T Consensus       119 ~V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~~sG------Garlqeg~~-------~--l~~~~~i~~  182 (304)
T 2f9y_B          119 PVVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSASG------GARMQEALM-------S--LMQMAKTSA  182 (304)
T ss_dssp             ECBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEES------SBCGGGTHH-------H--HHHHHHHHH
T ss_pred             EEEEEEEcCccccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEECCC------CcCHHHHHH-------H--HHHHHHHHH
Confidence            3455555555577999999999999999999988 79999999876      667654221       0  111233444


Q ss_pred             HH---hcCCCcEEEEEcCcccccc-hhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCC
Q 024304          160 QI---RRLPKPVIAMVAGYAVGGG-HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF  235 (269)
Q Consensus       160 ~i---~~~~kP~Ia~v~G~a~GgG-~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~  235 (269)
                      .+   ...++|+|++|+|+|.||| +.++++||++|+.++|.|++.           +...+.+.+|..      ++++.
T Consensus       183 al~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~-----------Gp~~i~~~ig~~------l~~~~  245 (304)
T 2f9y_B          183 ALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA-----------GPRVIEQTVREK------LPPGF  245 (304)
T ss_dssp             HHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS-----------CHHHHHHHHTSC------CCTTT
T ss_pred             HHHHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee-----------cHHHHHHHhCcc------CCccc
Confidence            44   4559999999999999999 778999999999999999985           355667777763      56889


Q ss_pred             CCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          236 YTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       236 i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      .++++++++|+||.|++++++.+.+.+++..++
T Consensus       246 ~~Ae~~~~~Glvd~Vv~~~el~~~l~~ll~~l~  278 (304)
T 2f9y_B          246 QRSEFLIEKGAIDMIVRRPEMRLKLASILAKLM  278 (304)
T ss_dssp             TBHHHHGGGTCCSEECCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHhcCCccEEeCcHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999998875

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=99.50  E-value=2e-13  Score=123.08  Aligned_cols=152  Identities=15%  Similarity=0.206  Sum_probs=108.8

Q ss_pred             cCCEEEEEEcCCC---------CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304           78 GEGIAKITINRPD---------RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (269)
Q Consensus        78 ~~gv~~I~lnrp~---------~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~  148 (269)
                      ++.-..|.-|++.         ..++++++......++++.+++.. +-+|.|.-.++ ++. |.+.+...         
T Consensus       115 ~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~-~PlI~lvdt~G-a~~-g~~ae~~g---------  182 (327)
T 2f9i_A          115 NGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFN-RPIFTFIDTKG-AYP-GKAAEERG---------  182 (327)
T ss_dssp             TTEEEEEEEECCCSSHHHHHHTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEESC-SCC-CHHHHHTT---------
T ss_pred             CCEEEEEEEEcCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCCC-CCc-chhhhhhh---------
Confidence            5555566666665         347899999999999999988765 34555543332 222 32221110         


Q ss_pred             hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhh-hCHHHHH
Q 024304          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL-VGPKKAR  227 (269)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~-~G~~~a~  227 (269)
                       ....+..++..+..+++|+|++|+|.|.|||+.++++||++||.+++.|++       .++.+++..+.+. .+...+.
T Consensus       183 -~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~D~via~~~A~~~v-------~~peg~a~il~~~~~~a~~A~  254 (327)
T 2f9i_A          183 -QSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSV-------ISPEGAAALLWKDSNLAKIAA  254 (327)
T ss_dssp             -HHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHHHTTCCCSEEEEETTCBCBS-------SCHHHHHHHHSSCGGGHHHHH
T ss_pred             -hHHHHHHHHHHHHhCCCCEEEEEECCcChHHHHHHHCCCEEEEcCCceEee-------cCchHHHHHHHHHhcchHHHH
Confidence             111244566788899999999999999999999999999999999999985       2333445555444 4446666


Q ss_pred             HHHHcCCCCCHHHHHHcCccceecCC
Q 024304          228 EMWFLARFYTAEEAEKMGLVNTVVPV  253 (269)
Q Consensus       228 ~l~ltg~~i~a~eA~~~GLv~~vv~~  253 (269)
                      ++    +.++|++|+++|+||+|+|.
T Consensus       255 e~----~~itA~~a~~~GlVd~VV~e  276 (327)
T 2f9i_A          255 ET----MKITAHDIKQLGIIDDVISE  276 (327)
T ss_dssp             HH----HTCBHHHHHHTTSSSEEECC
T ss_pred             HH----cCCCHHHHHHcCCceEEecC
Confidence            66    78999999999999999984

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.47  E-value=3.3e-13  Score=122.09  Aligned_cols=139  Identities=17%  Similarity=0.156  Sum_probs=104.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEE
Q 024304           92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM  171 (269)
Q Consensus        92 ~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~  171 (269)
                      .++++++......++++.+++.. +-+|.|.-.++ ++. |.+.+...          .......++..+..+++|+|++
T Consensus       152 ~G~~~~~~~~Ka~r~~~~A~~~~-lPlI~lvDt~G-a~~-g~~aE~~g----------~~~~~a~~l~al~~~~vPvIav  218 (339)
T 2f9y_A          152 FGMPAPEGYRKALRLMQMAERFK-MPIITFIDTPG-AYP-GVGAEERG----------QSEAIARNLREMSRLGVPVVCT  218 (339)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEESC-SCC-SHHHHHTT----------HHHHHHHHHHHHHTCSSCEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCCC-Ccc-chHHHHHH----------HHHHHHHHHHHHHhCCCCEEEE
Confidence            46899999999999999887765 44555544332 222 32221110          1112445667888999999999


Q ss_pred             EcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceec
Q 024304          172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV  251 (269)
Q Consensus       172 v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv  251 (269)
                      |+|.|.|||+.+.++||++||.+++.|++      +.|.++++..+.+..+...+.++    ..+++++|+++|+||+|+
T Consensus       219 V~G~a~GGGa~~~~~~D~via~p~A~~~v------~~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~GlVd~VV  288 (339)
T 2f9y_A          219 VIGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSII  288 (339)
T ss_dssp             EEEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCCC
T ss_pred             EeCCcCcHHHHHHhccCeeeecCCCEEEe------eccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCCeeEEe
Confidence            99999999999999999999999999996      34555555555666676777777    679999999999999999


Q ss_pred             CC
Q 024304          252 PV  253 (269)
Q Consensus       252 ~~  253 (269)
                      |.
T Consensus       289 ~e  290 (339)
T 2f9y_A          289 PE  290 (339)
T ss_dssp             CC
T ss_pred             cC
Confidence            84

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=99.20  E-value=4.1e-11  Score=101.47  Aligned_cols=147  Identities=15%  Similarity=0.087  Sum_probs=99.6

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEc
Q 024304           94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA  173 (269)
Q Consensus        94 al~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~  173 (269)
                      .++..+.+.+.+.|..++.++..+.|+|.=..|     |+++..                ...++..|..+++||++.+.
T Consensus        35 ~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSP-----GG~v~a----------------~~~I~~~i~~~~~pV~~~v~   93 (208)
T 2cby_A           35 EVNDEIANRLCAQILLLAAEDASKDISLYINSP-----GGSISA----------------GMAIYDTMVLAPCDIATYAM   93 (208)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEEC-----CBCHHH----------------HHHHHHHHHHCSSCEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhCCCCCCEEEEEECC-----CCCHHH----------------HHHHHHHHHhcCCCEEEEEC
Confidence            367899999999999998776677666643322     332211                33556678888999999999


Q ss_pred             CcccccchhhhhcccE--EEEeCCceEecCCCCcccCC---CChH------------HHHHHhhhC--HHHHHHHHHcCC
Q 024304          174 GYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFD---AGYG------------SSIMSRLVG--PKKAREMWFLAR  234 (269)
Q Consensus       174 G~a~GgG~~lal~~D~--~ia~~~a~f~~~~~~~Gl~p---~~g~------------~~~l~r~~G--~~~a~~l~ltg~  234 (269)
                      |.|.++|..++++||.  |++.+++.++...+.-|...   +..-            ...+.+..|  .....+++..++
T Consensus        94 g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~  173 (208)
T 2cby_A           94 GMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDR  173 (208)
T ss_dssp             EEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTC
T ss_pred             cEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhCCc
Confidence            9999999999999998  99999999998776533110   0000            012333334  334566788899


Q ss_pred             CCCHHHHHHcCccceecCC-CcHHHHHH
Q 024304          235 FYTAEEAEKMGLVNTVVPV-SLFVAYLM  261 (269)
Q Consensus       235 ~i~a~eA~~~GLv~~vv~~-e~l~~~a~  261 (269)
                      .++|+||+++||||++.+. +++.+...
T Consensus       174 ~~ta~eA~e~GLvD~i~~~~~~ll~~~~  201 (208)
T 2cby_A          174 WFTAAEALEYGFVDHIITRAHVNGEAQL  201 (208)
T ss_dssp             EEEHHHHHHHTSCSEECSCC--------
T ss_pred             EEcHHHHHHcCCCcEecCchHHHHHHHH
Confidence            9999999999999999854 55555443

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=98.93  E-value=1.4e-08  Score=85.47  Aligned_cols=140  Identities=21%  Similarity=0.186  Sum_probs=99.2

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEc
Q 024304           94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA  173 (269)
Q Consensus        94 al~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~  173 (269)
                      .++..+...+...|..++.++..+.|+|.=+.|     |+++..                ...+...|...++||++.+.
T Consensus        35 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSP-----GG~v~~----------------~~~I~~~i~~~~~~V~t~~~   93 (203)
T 3qwd_A           35 QIDDNVANSIVSQLLFLQAQDSEKDIYLYINSP-----GGSVTA----------------GFAIYDTIQHIKPDVQTICI   93 (203)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEEC-----CBCHHH----------------HHHHHHHHHHSSSCEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCC-----CCCHHH----------------HHHHHHHHHHhcCCcEEEEe
Confidence            488999999999999998776666666543332     333221                23456677788999999999


Q ss_pred             Ccccccchhhhhccc--EEEEeCCceEecCCCCcccCCCChHHH---------------HHHhhhC--HHHHHHHHHcCC
Q 024304          174 GYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGSS---------------IMSRLVG--PKKAREMWFLAR  234 (269)
Q Consensus       174 G~a~GgG~~lal~~D--~~ia~~~a~f~~~~~~~Gl~p~~g~~~---------------~l~r~~G--~~~a~~l~ltg~  234 (269)
                      |.|.++|..|+++||  .|++.+++.|.+..+.-|.....--..               .+.+..|  .....+++-...
T Consensus        94 G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~~~~d~  173 (203)
T 3qwd_A           94 GMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDN  173 (203)
T ss_dssp             EEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSSTTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHHHTSCC
T ss_pred             eeehhHHHHHHHcCCcCeEEEcCCceEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhcCc
Confidence            999999999999999  699999999998765433211110000               1222223  334455555566


Q ss_pred             CCCHHHHHHcCccceecCCC
Q 024304          235 FYTAEEAEKMGLVNTVVPVS  254 (269)
Q Consensus       235 ~i~a~eA~~~GLv~~vv~~e  254 (269)
                      .++|+||+++||+|+|+...
T Consensus       174 ~lta~EA~e~GliD~I~~~~  193 (203)
T 3qwd_A          174 FLTAEEAKEYGLIDEVMVPE  193 (203)
T ss_dssp             CEEHHHHHHHTSCSEECCCC
T ss_pred             eecHHHHHHcCCcCEecCCc
Confidence            89999999999999999765

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=98.88  E-value=3.3e-09  Score=88.66  Aligned_cols=140  Identities=16%  Similarity=0.136  Sum_probs=97.6

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEc
Q 024304           94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA  173 (269)
Q Consensus        94 al~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~  173 (269)
                      .++..+...+.+.|..++.++..+.|+|.=..|     |+++..                ...++..|..+++|+++.+.
T Consensus        34 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSP-----GG~v~a----------------~~~I~~~i~~~~~pV~~~v~   92 (193)
T 1yg6_A           34 QVEDHMANLIVAQMLFLEAENPEKDIYLYINSP-----GGVITA----------------GMSIYDTMQFIKPDVSTICM   92 (193)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEEC-----CBCHHH----------------HHHHHHHHHHSSSCEEEEEE
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECc-----CCCHHH----------------HHHHHHHHHhcCCCEEEEEe
Confidence            378889999999999988766677777754333     333221                33456678888999999999


Q ss_pred             CcccccchhhhhcccE--EEEeCCceEecCCCCcccCCCChHHH---------------HHHhhhC--HHHHHHHHHcCC
Q 024304          174 GYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSS---------------IMSRLVG--PKKAREMWFLAR  234 (269)
Q Consensus       174 G~a~GgG~~lal~~D~--~ia~~~a~f~~~~~~~Gl~p~~g~~~---------------~l~r~~G--~~~a~~l~ltg~  234 (269)
                      |.|..+|.-++++||.  |++.+++.++...+..|.....--..               .+.+..|  .....+++-.+.
T Consensus        93 g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~  172 (193)
T 1yg6_A           93 GQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDR  172 (193)
T ss_dssp             EEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCE
T ss_pred             eeHHHHHHHHHHCCCcCcEEEecCcEEEEEeccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCe
Confidence            9999999999999999  99999999988766543211000000               1222223  233344433455


Q ss_pred             CCCHHHHHHcCccceecCCC
Q 024304          235 FYTAEEAEKMGLVNTVVPVS  254 (269)
Q Consensus       235 ~i~a~eA~~~GLv~~vv~~e  254 (269)
                      .++++||+++||||++.++.
T Consensus       173 ~~ta~eA~~~GliD~i~~~~  192 (193)
T 1yg6_A          173 FLSAPEAVEYGLVDSILTHR  192 (193)
T ss_dssp             EEEHHHHHHHTSSSEECCCC
T ss_pred             EEcHHHHHHcCCCCEecCCC
Confidence            67999999999999998653

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=98.83  E-value=1.6e-08  Score=85.93  Aligned_cols=139  Identities=14%  Similarity=0.085  Sum_probs=95.1

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEc
Q 024304           94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA  173 (269)
Q Consensus        94 al~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~  173 (269)
                      .++..+...+...|..++.++. +.|+|.=..|     |+++..                ...++..|...++|+++.+.
T Consensus        47 ~I~~~~a~~i~~~L~~l~~~~~-k~I~l~INSP-----GGsv~a----------------~~~I~~~i~~~~~pV~t~v~  104 (215)
T 2f6i_A           47 EINKKTADELISQLLYLDNINH-NDIKIYINSP-----GGSINE----------------GLAILDIFNYIKSDIQTISF  104 (215)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCC-SCEEEEEEEC-----CBCHHH----------------HHHHHHHHHHSSSCEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhCCC-CcEEEEEECC-----CCCHHH----------------HHHHHHHHHhcCCCEEEEEe
Confidence            3678889999999998876555 6666654332     333221                23456678888999999999


Q ss_pred             CcccccchhhhhcccE--EEEeCCceEecCCCCcccCC---CCh----HHH--------HHHhhhC--HHHHHHHHHcCC
Q 024304          174 GYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFD---AGY----GSS--------IMSRLVG--PKKAREMWFLAR  234 (269)
Q Consensus       174 G~a~GgG~~lal~~D~--~ia~~~a~f~~~~~~~Gl~p---~~g----~~~--------~l~r~~G--~~~a~~l~ltg~  234 (269)
                      |.|..+|.-++++||.  +++.+++.+++..+..|...   +..    -..        .+.+..|  .....+++-.+.
T Consensus       105 g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~~~~~  184 (215)
T 2f6i_A          105 GLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDY  184 (215)
T ss_dssp             EEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTC
T ss_pred             eEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhCCe
Confidence            9999999999999999  99999999988765433211   000    000        1111222  334445544455


Q ss_pred             CCCHHHHHHcCccceecCCC
Q 024304          235 FYTAEEAEKMGLVNTVVPVS  254 (269)
Q Consensus       235 ~i~a~eA~~~GLv~~vv~~e  254 (269)
                      .++++||+++||||+|.+..
T Consensus       185 ~lta~eA~e~GLiD~I~~~~  204 (215)
T 2f6i_A          185 YMNALEAKQYGIIDEVIETK  204 (215)
T ss_dssp             EECHHHHHHHTSCSEECCCS
T ss_pred             ecCHHHHHHCCCCCEecCCc
Confidence            67999999999999998653

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=98.74  E-value=5.2e-08  Score=85.46  Aligned_cols=138  Identities=14%  Similarity=0.139  Sum_probs=95.5

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcC
Q 024304           95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG  174 (269)
Q Consensus        95 l~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G  174 (269)
                      ++.++...+...|..++.++..+.|+|.=+.|     |+++..                ...++..|...++||++.+.|
T Consensus        91 I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSP-----GGsV~a----------------g~aIyd~I~~~k~pV~t~v~G  149 (277)
T 1tg6_A           91 IDDSVASLVIAQLLFLQSESNKKPIHMYINSP-----GGVVTA----------------GLAIYDTMQYILNPICTWCVG  149 (277)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEEC-----CBCHHH----------------HHHHHHHHHHSCSCEEEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCCCEEEEEECC-----CCCHHH----------------HHHHHHHHHhcCCCEEEEEcc
Confidence            78889999999999886644457777654333     333221                234566777888999999999


Q ss_pred             cccccchhhhhcccE--EEEeCCceEecCCCCcccCCCChHHH---------------HHHhhhC--HHHHHHHHHcCCC
Q 024304          175 YAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSS---------------IMSRLVG--PKKAREMWFLARF  235 (269)
Q Consensus       175 ~a~GgG~~lal~~D~--~ia~~~a~f~~~~~~~Gl~p~~g~~~---------------~l~r~~G--~~~a~~l~ltg~~  235 (269)
                      .|..+|.-|+++||.  |++.+++.++...+..|.....--..               .+.+..|  .....+++-.+..
T Consensus       150 ~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~~drd~~  229 (277)
T 1tg6_A          150 QAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRY  229 (277)
T ss_dssp             EEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSCEE
T ss_pred             EeHHHHHHHHHCCCcCCEEEecCCEEEEecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcc
Confidence            999999999999999  99999999998766533211100000               1112223  3334444444567


Q ss_pred             CCHHHHHHcCccceecCC
Q 024304          236 YTAEEAEKMGLVNTVVPV  253 (269)
Q Consensus       236 i~a~eA~~~GLv~~vv~~  253 (269)
                      ++++||+++||||+|...
T Consensus       230 lta~EAle~GLID~I~~~  247 (277)
T 1tg6_A          230 MSPMEAQEFGILDKVLVH  247 (277)
T ss_dssp             ECHHHHHHHTSCSEECSS
T ss_pred             cCHHHHHHCCCCCEecCc
Confidence            899999999999999864

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=98.71  E-value=4.1e-08  Score=82.45  Aligned_cols=140  Identities=16%  Similarity=0.141  Sum_probs=96.6

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEc
Q 024304           94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA  173 (269)
Q Consensus        94 al~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~  173 (269)
                      .++.++...+...|..++.++..+.|+|.=+.|     |+++..                ...++..+...++|+++.+.
T Consensus        38 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSp-----GG~v~~----------------~~~I~~~i~~~~~~v~t~~~   96 (201)
T 3p2l_A           38 EVNDHSANLVIAQLLFLESEDPDKDIYFYINSP-----GGMVTA----------------GMGVYDTMQFIKPDVSTICI   96 (201)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEEC-----CBCHHH----------------HHHHHHHHHHSSSCEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEECC-----CCCHHH----------------HHHHHHHHHHhCCCeEEEEc
Confidence            378899999999999998766566666644332     333221                23456677888999999999


Q ss_pred             CcccccchhhhhcccE--EEEeCCceEecCCCCcccCCCChHHH-----------------HHHhhhC--HHHHHHHHHc
Q 024304          174 GYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSS-----------------IMSRLVG--PKKAREMWFL  232 (269)
Q Consensus       174 G~a~GgG~~lal~~D~--~ia~~~a~f~~~~~~~Gl~p~~g~~~-----------------~l~r~~G--~~~a~~l~lt  232 (269)
                      |.|.++|.-|++++|.  |++.+++.+.+..+.-|..  +-...                 .+.+..|  .....+++-.
T Consensus        97 G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~~--G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~~~~  174 (201)
T 3p2l_A           97 GLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFR--GQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDR  174 (201)
T ss_dssp             EEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEEE--EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSS
T ss_pred             CEehhHHHHHHHcCccCCEEEcCCCeEEEeccccccC--CCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhhc
Confidence            9999999999999998  9999999998877653321  11110                 1122223  2333344333


Q ss_pred             CCCCCHHHHHHcCccceecCC-CcH
Q 024304          233 ARFYTAEEAEKMGLVNTVVPV-SLF  256 (269)
Q Consensus       233 g~~i~a~eA~~~GLv~~vv~~-e~l  256 (269)
                      ...++|+||+++||||+|++. ++|
T Consensus       175 ~~~lta~EA~e~GliD~I~~~~~~l  199 (201)
T 3p2l_A          175 DNFMMADEAKAYGLIDHVIESREAI  199 (201)
T ss_dssp             CEEEEHHHHHHHTSCSEECCCSCC-
T ss_pred             CeeecHHHHHHcCCccEecCCHHHh
Confidence            445799999999999999865 444

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=98.45  E-value=1.5e-06  Score=72.88  Aligned_cols=144  Identities=15%  Similarity=0.184  Sum_probs=93.0

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCceEEE--EEcCCCCce----eccccccccccCCccchhhhhhhhHHHHHHHHhcCCCc
Q 024304           94 AFRPHTVKELIRAFNDARDDSSVGVII--LTGKGTEAF----CSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKP  167 (269)
Q Consensus        94 al~~~~~~~L~~al~~~~~d~~~~vvV--l~g~g~~~F----c~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP  167 (269)
                      .++.++...+...|..++.++..+-|.  |-+.|. .-    -.-+|+.                ....++..|...+.|
T Consensus        36 ~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~-~~~~~~~~~G~v~----------------aglaIyd~m~~~~~~   98 (205)
T 4gm2_A           36 PIYPHISEQIISQLLYLEYESKRKPIHLYINSTGD-IDNNKIINLNGIT----------------DVISIVDVINYISSD   98 (205)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTT-EETTEESCTTHHH----------------HHHHHHHHHHHSSSC
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCC-CCcCCCCCCCCHH----------------HHHHHHHHHHhcCCC
Confidence            388999999999999887543223232  333331 00    0001111                123456677788999


Q ss_pred             EEEEEcCcccccchhhhhccc--EEEEeCCceEecCCCCccc-CCCChHHH---------------HHHhhhC--HHHHH
Q 024304          168 VIAMVAGYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGS-FDAGYGSS---------------IMSRLVG--PKKAR  227 (269)
Q Consensus       168 ~Ia~v~G~a~GgG~~lal~~D--~~ia~~~a~f~~~~~~~Gl-~p~~g~~~---------------~l~r~~G--~~~a~  227 (269)
                      |...+.|.|.+.|..|++++|  .|++.+++.+.+..+..|. .....-..               .+.+..|  .....
T Consensus        99 V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~  178 (205)
T 4gm2_A           99 VYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVIS  178 (205)
T ss_dssp             EEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             EEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            999999999999999999999  5999999999887776543 11110010               1122223  22333


Q ss_pred             HHHHcCCCCCHHHHHHcCccceecCCC
Q 024304          228 EMWFLARFYTAEEAEKMGLVNTVVPVS  254 (269)
Q Consensus       228 ~l~ltg~~i~a~eA~~~GLv~~vv~~e  254 (269)
                      +++-...-++|+||+++||+|+|++.|
T Consensus       179 ~~m~rd~~msa~EA~eyGlID~V~~~e  205 (205)
T 4gm2_A          179 NVLERDKYFNADEAVDFKLIDHILEKE  205 (205)
T ss_dssp             HHTTSCEEEEHHHHHHTTSCSEECCC-
T ss_pred             HHhcCCcccCHHHHHHcCCccEeecCC
Confidence            444445679999999999999999764

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=98.43  E-value=1.1e-06  Score=85.26  Aligned_cols=148  Identities=17%  Similarity=0.116  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccc
Q 024304           99 TVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVG  178 (269)
Q Consensus        99 ~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~G  178 (269)
                      ...++.+.|+.+.+|+.++.|+|.-..+    .|+++...             ..+.+.+..+....|||||.+++ +..
T Consensus        71 ~~~~i~~~L~~a~~d~~ik~I~L~insp----GgG~v~~~-------------~~I~~~i~~~k~~gkpvva~~~~-aas  132 (593)
T 3bf0_A           71 SLFDIVNTIRQAKDDRNITGIVMDLKNF----AGGDQPSM-------------QYIGKALKEFRDSGKPVYAVGEN-YSQ  132 (593)
T ss_dssp             EHHHHHHHHHHHHHCTTCCCEEEECTEE----EECCHHHH-------------HHHHHHHHHHHHTTCCEEEEESC-EEH
T ss_pred             CHHHHHHHHHHHHhCCCceEEEEEeCCC----CCCcHHHH-------------HHHHHHHHHHHhcCCeEEEEEcc-chh
Confidence            4678899999999999999999987553    12444331             12444555666667999999876 567


Q ss_pred             cchhhhhcccEEEEeCCceEecCCCCcc------------c---------CCCChHHH-----------HHH--------
Q 024304          179 GGHVLHMVCDLTIAADNAIFGQTGPKVG------------S---------FDAGYGSS-----------IMS--------  218 (269)
Q Consensus       179 gG~~lal~~D~~ia~~~a~f~~~~~~~G------------l---------~p~~g~~~-----------~l~--------  218 (269)
                      +|+-|+++||.+++.+.+.++...+..+            +         +-..+-.+           .+.        
T Consensus       133 ~~y~lAsaad~i~~~P~~~vg~~g~~~~~~~~~~~l~klGi~~~~~~~G~~K~a~ep~~r~~ms~~~re~~~~~l~~~~~  212 (593)
T 3bf0_A          133 GQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQ  212 (593)
T ss_dssp             HHHHHHTTSSEEEECTTCCEECCCCBCCEEECHHHHHHTTCEEEEEEECTTCGGGHHHHCSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCEEEECCCceEEEecccccccCHHHHHHHcCCeEEEEEeecccCCCCcccCCCCCHHHHHHHHHHHHHHHH
Confidence            7899999999999999999998766432            1         00010000           011        


Q ss_pred             ---------hhhCHHHHHHHHHc-------CCCCCHHHHHHcCccceecCCCcHHHHHHHHH
Q 024304          219 ---------RLVGPKKAREMWFL-------ARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLT  264 (269)
Q Consensus       219 ---------r~~G~~~a~~l~lt-------g~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la  264 (269)
                               |-+.....++++-.       +..++|++|++.||||++...+++.+.+.++.
T Consensus       213 ~~~~~va~~Rg~~~e~l~~~~d~~~~~l~~~~~~ta~~A~~~GLvD~i~~~~e~~~~l~~~~  274 (593)
T 3bf0_A          213 NYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEF  274 (593)
T ss_dssp             HHHHHHHHHHTSCHHHHCCHHHHHHHHHHTTTTCHHHHHHHTTSSSEECCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHhhhhhhhhhcCCccHHHHHHCCCCCCCCCHHHHHHHHHHHh
Confidence                     11122233333333       78999999999999999998888877776654

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=98.24  E-value=4.3e-06  Score=80.49  Aligned_cols=166  Identities=17%  Similarity=0.189  Sum_probs=109.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHH
Q 024304           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (269)
Q Consensus        81 v~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (269)
                      |.++..+..-+..++.+...+.+.++++.+.+.. +-+|.|.-.|      |..+.+-... ..+.....  .+..-+..
T Consensus       107 v~v~a~D~t~~gGs~g~~~~~Ki~r~~e~A~~~~-lPvI~l~dSg------GArlqe~~~~-l~~~~~~g--~i~~~~~~  176 (587)
T 1pix_A          107 CVVVASDNKKLAGAWVPGQAECLLRASDTAKTLH-VPLVYVLNCS------GVKFDEQEKV-YPNRRGGG--TPFFRNAE  176 (587)
T ss_dssp             EEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHT-CCEEEEECCC------EECGGGHHHH-SSSTTSTT--HHHHHHHH
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCC------CCCccccchh-ccccccHH--HHHHHHHH
Confidence            4444444444557899999999999999988764 4466665433      4444331110 00000011  12233456


Q ss_pred             HhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC-ceEecCCCCc--ccCCCChHHHHHHhhhCHHHHHHHH-HcCCCC
Q 024304          161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKV--GSFDAGYGSSIMSRLVGPKKAREMW-FLARFY  236 (269)
Q Consensus       161 i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~~~~~~--Gl~p~~g~~~~l~r~~G~~~a~~l~-ltg~~i  236 (269)
                      +.....|+|+.|.|+|.|||... ..||++|++++ +.+++..+.+  +.-+-        --++..+|.+++ .+|+.+
T Consensus       177 ls~~giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~vi~~~~~~--------~~~d~~~A~el~~~tge~v  247 (587)
T 1pix_A          177 LNQLGIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAGIMGGMNPK--------GHVDLEYANEIADMVDRTG  247 (587)
T ss_dssp             HHHTTCCEEEEECSEEETHHHHH-HHSSSEEEEETTCEEESCCCTTCCSCCSS--------SSCCHHHHHHHHHHHHTTC
T ss_pred             HhCCCCCEEEEEecCCcHHHHHH-HhcCceEEecCCcEEEecCHHHHhhhccc--------cccchhHHHHHHHHhCCcc
Confidence            77889999999999999999999 99999999875 9988855432  11111        126788999999 888887


Q ss_pred             CHHH-----H--HHcCccceecCCCc-HHHHHHHHHH
Q 024304          237 TAEE-----A--EKMGLVNTVVPVSL-FVAYLMSLTK  265 (269)
Q Consensus       237 ~a~e-----A--~~~GLv~~vv~~e~-l~~~a~~la~  265 (269)
                      ++++     .  .+.|++|.+++.|+ ..+.+.++..
T Consensus       248 ~~e~lgga~~h~~~~GvvD~vv~~e~~a~~~~r~~ls  284 (587)
T 1pix_A          248 KTEPPGAVDIHYTETGFMREVYASEEGVLEGIKKYVG  284 (587)
T ss_dssp             CCCCSSBHHHHTTTSCCSCEEESSHHHHHHHHHHHHH
T ss_pred             ChhhcccHHHHHhhcCceeEecCCHHHHHHHHHHHHH
Confidence            6554     3  36899999999876 5556655544

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=98.09  E-value=0.0001  Score=69.91  Aligned_cols=191  Identities=16%  Similarity=0.159  Sum_probs=128.0

Q ss_pred             EEEEEEecCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHhh-cCCCceEEEEEcCCCCceecccccc
Q 024304           71 IIYEKAVGEGIAKITINRPDRR-------------NAFRPHTVKELIRAFNDAR-DDSSVGVIILTGKGTEAFCSGGDQA  136 (269)
Q Consensus        71 v~~~~~~~~gv~~I~lnrp~~~-------------Nal~~~~~~~L~~al~~~~-~d~~~~vvVl~g~g~~~Fc~G~Dl~  136 (269)
                      ..+++  ..+++.++...|..-             +.....|-.+|.+++-.+. ++.++...++...|+..---..|--
T Consensus       270 ~ai~r--a~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~~~~~~t~g~~~~~~~~~~~  347 (556)
T 2w3p_A          270 VTIDR--AKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGDARHLLAADAS  347 (556)
T ss_dssp             EEEET--TTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEESCHHHHHHHHHH
T ss_pred             HHHHH--HHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHhHhhhhccCCHHHHhhhHHH
Confidence            44555  788999999987632             2233457788877777775 5688999999887752111111111


Q ss_pred             ccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEE-cCcccccc-hhhhhcccEEEEeC-------CceEecCCCCccc
Q 024304          137 LRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV-AGYAVGGG-HVLHMVCDLTIAAD-------NAIFGQTGPKVGS  207 (269)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v-~G~a~GgG-~~lal~~D~~ia~~-------~a~f~~~~~~~Gl  207 (269)
                      .....+++-..+. ...+...+.++--...-+++.| .|.|+.|- +||+++||..++-+       .+.+.+.+.++|.
T Consensus       348 ~~~~~~~~~~~~~-~~~~~~~~~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (556)
T 2w3p_A          348 LMQHKDHWFVRET-IGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGL  426 (556)
T ss_dssp             HHHTTTSHHHHHH-HHHHHHHHHHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCCEECCGGGGTT
T ss_pred             HHhccchHHHHHH-HHHHHHHHHHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCceeEeeccccCc
Confidence            1111111100111 1113345556667888899999 68897775 58999999999863       3778899999999


Q ss_pred             CCCChHHHHHHhhh-CHHHHHHH--HHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHH
Q 024304          208 FDAGYGSSIMSRLV-GPKKAREM--WFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLT  264 (269)
Q Consensus       208 ~p~~g~~~~l~r~~-G~~~a~~l--~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la  264 (269)
                      +|-..+..+|.++. |.....+-  ...|+++++++|.++|||+...++=+++++++-..
T Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (556)
T 2w3p_A          427 YPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDDIDWADEIRIAL  486 (556)
T ss_dssp             SCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTSSSBCCCTTTHHHHHHHHH
T ss_pred             ccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCCeecCcccCChHHHHHHHH
Confidence            99888888886554 44333322  34599999999999999999988877777765443

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=98.04  E-value=0.00026  Score=62.28  Aligned_cols=160  Identities=16%  Similarity=0.156  Sum_probs=102.5

Q ss_pred             cCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304           78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (269)
Q Consensus        78 ~~gv~~I~lnrp~-~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~  156 (269)
                      ++.-..|.-|++. ...++.....+.+.++++.+.+.. +-+|.|.-.|+ +     -..+    +.  ...........
T Consensus       119 ~G~~V~v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~~-lPlI~l~dsgG-a-----r~qE----Gi--~sl~q~aki~~  185 (285)
T 2f9i_B          119 DGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENR-LPFILFSASGG-A-----RMQE----GI--ISLMQMGKTSV  185 (285)
T ss_dssp             TTEEEEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEECS-C-----CGGG----HH--HHHHHHHHHHH
T ss_pred             CCEEEEEEEEccccccCcCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCC-c-----chhh----hh--hhHhHHHHHHH
Confidence            4433344444443 457899999999999999887664 55777765443 2     1111    00  00000112233


Q ss_pred             HHHHHhcCCCcEEEEEcCcccccchh-hhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCC
Q 024304          157 LQVQIRRLPKPVIAMVAGYAVGGGHV-LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF  235 (269)
Q Consensus       157 l~~~i~~~~kP~Ia~v~G~a~GgG~~-lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~  235 (269)
                      .+..+.....|.|+.+-|+|.||+.. +++.+|++++.++|.+++..+.+           ....++...      .-..
T Consensus       186 ~l~~~s~~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~aGP~v-----------i~~~~~~~~------~e~~  248 (285)
T 2f9i_B          186 SLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRV-----------IEQTINEKL------PDDF  248 (285)
T ss_dssp             HHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHHH-----------HHHHHTSCC------CTTT
T ss_pred             HHHHHHcCCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEEcCHHH-----------HHHHhcccc------hHhH
Confidence            45566678999999999999999854 48999999999999988743331           112222211      1112


Q ss_pred             CCHHHHHHcCccceecCCCcHHHHHHHHHHhh
Q 024304          236 YTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQ  267 (269)
Q Consensus       236 i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~l  267 (269)
                      -+++.+.+.|+||.|++++++.+.+.++...+
T Consensus       249 ~~Ae~~~~~G~iD~Iv~~~e~r~~l~~~L~~l  280 (285)
T 2f9i_B          249 QTAEFLLEHGQLDKVVHRNDMRQTLSEILKIH  280 (285)
T ss_dssp             TBHHHHHHTTCCSEECCGGGHHHHHHHHHHHT
T ss_pred             hhHHHHHhcCCccEEeChHHHHHHHHHHHHHh
Confidence            24677788999999999998888887776654

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=97.93  E-value=0.00034  Score=66.55  Aligned_cols=154  Identities=16%  Similarity=0.173  Sum_probs=99.5

Q ss_pred             cCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304           78 GEGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (269)
Q Consensus        78 ~~gv~~I~lnrp-~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~  156 (269)
                      ++.-..|.-|.. -+..++.....+.+.++++.+.+.. +-+|.|.-.|+      .-+.+    .........  .+..
T Consensus        95 ~Gr~v~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~~-lP~I~l~dSgG------aRmqE----g~~~l~~~~--~i~~  161 (530)
T 3iav_A           95 DGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTG-CPVVGINDSGG------ARIQE----GVASLGAYG--EIFR  161 (530)
T ss_dssp             TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCCS------BCGGG----THHHHHHHH--HHHH
T ss_pred             CCEEEEEEEECCCcceEeccHHHHHHHHHHHHHHHHcC-CCEEEEEcCCC------cchhh----hhhhHHHHH--HHHH
Confidence            443344444444 4667999999999999999998763 55666654442      22221    100000000  1111


Q ss_pred             HHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC-ceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCC
Q 024304          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF  235 (269)
Q Consensus       157 l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~  235 (269)
                      -+..+.. -.|+|+.|.|+|.|||......||++|++++ +.+++.                    |+...+  ..+|+.
T Consensus       162 ~~~~~s~-~iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~a--------------------GP~vi~--~~~ge~  218 (530)
T 3iav_A          162 RNTHASG-VIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT--------------------GPDVIK--TVTGED  218 (530)
T ss_dssp             HHHHTTT-TSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHH--HHHCCC
T ss_pred             HHHHHcC-CCCEEEEEecCcchHHHHHHHhCCEEEEecCCcEEEec--------------------CHHHHH--HHhCCc
Confidence            1122223 3999999999999999988889999999976 888763                    222222  157788


Q ss_pred             CCHHHH-------HHcCccceecCCC-cHHHHHHHHHHhh
Q 024304          236 YTAEEA-------EKMGLVNTVVPVS-LFVAYLMSLTKCQ  267 (269)
Q Consensus       236 i~a~eA-------~~~GLv~~vv~~e-~l~~~a~~la~~l  267 (269)
                      +++++.       ...|++|.++++| +..+.++++..-|
T Consensus       219 v~~e~LGGa~~h~~~sGv~d~va~de~~a~~~~r~~ls~l  258 (530)
T 3iav_A          219 VGFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYL  258 (530)
T ss_dssp             CCHHHHHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHHHS
T ss_pred             CChhhcchHHHHHhccCceeEEecChHHHHHHHHHHHHhc
Confidence            888775       5799999999886 4777777776544

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=97.73  E-value=0.0008  Score=63.97  Aligned_cols=150  Identities=17%  Similarity=0.211  Sum_probs=96.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHH
Q 024304           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (269)
Q Consensus        81 v~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (269)
                      |..+..+..-+..++.....+.+.++++.+.+.. +-+|.|.-.|      |.-+.+    .........+  ...-+..
T Consensus       107 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~-lPvI~l~dSG------GARmqe----g~~sl~~~~~--i~~~~~~  173 (531)
T 3n6r_B          107 VYVFSQDFTVLGGSVSETHSKKICKIMDMAMQNG-APVIGINDSG------GARIQE----GVDSLAGYGE--VFQRNIM  173 (531)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCC------CBCGGG----THHHHHHHHH--HHHHHHH
T ss_pred             EEEEEECCCcccccccHHHHHHHHHHHHHHHHcC-CCEEEEeCCC------ccccCc----ccchhhhHHH--HHHHHHH
Confidence            3334444434557999999999999999887654 4566665444      222222    0000000111  1111112


Q ss_pred             HhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC-ceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHH
Q 024304          161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE  239 (269)
Q Consensus       161 i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~  239 (269)
                      + .-..|+|+.|.|+|.|||......||++|+.++ +.+++.                    |+...+  ..+|+.++++
T Consensus       174 ~-s~~iP~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~a--------------------GP~vI~--~~~ge~v~~E  230 (531)
T 3n6r_B          174 A-SGVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVT--------------------GPDVVK--TVTNEQVSAE  230 (531)
T ss_dssp             T-TTTSCEEEEECSCCBGGGGHHHHHSSEEEEETTTCBCBSS--------------------CHHHHH--HHHCCCCCHH
T ss_pred             H-hCCCCEEEEEeCCcchHHHHHhhhCCEEEEecCCceEeec--------------------CHHHHH--HHhCCccChh
Confidence            2 245899999999999999987778999999986 776652                    221111  1578899999


Q ss_pred             HH-------HHcCccceecCCC-cHHHHHHHHHHh
Q 024304          240 EA-------EKMGLVNTVVPVS-LFVAYLMSLTKC  266 (269)
Q Consensus       240 eA-------~~~GLv~~vv~~e-~l~~~a~~la~~  266 (269)
                      +.       .+.|++|.++++| +..+.++++...
T Consensus       231 ~LGGa~~h~~~sG~~d~v~~~e~~a~~~~r~lls~  265 (531)
T 3n6r_B          231 ELGGATTHTRKSSVADAAFENDVEALAEVRRLVDF  265 (531)
T ss_dssp             HHHBHHHHHHTTSCCSEEESSHHHHHHHHHHHHTT
T ss_pred             hcchHHHHhhccCcceEEeCCHHHHHHHHHHHHHh
Confidence            98       8899999999885 466666666543

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=97.66  E-value=0.00077  Score=64.08  Aligned_cols=151  Identities=17%  Similarity=0.177  Sum_probs=96.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHH
Q 024304           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (269)
Q Consensus        81 v~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (269)
                      |..+..+..-...++.....+.+.++++.+.+.. +-+|.|.-.|      |..+.+-.    ..-..+.+ -+..+ ..
T Consensus        97 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~-lP~I~l~~SG------GARmqeg~----~sl~~~~~-i~~~~-~~  163 (523)
T 1on3_A           97 VHAASQDFTVMGGSAGETQSTKVVETMEQALLTG-TPFLFFYDSG------GARIQEGI----DSLSGYGK-MFFAN-VK  163 (523)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEEEC------SBCGGGTH----HHHHHHHH-HHHHH-HH
T ss_pred             EEEEEEcCCccCCcCcHHHHHHHHHHHHHHHHcC-CCEEEEEcCC------CCChhhHH----HHHHHHHH-HHHHH-HH
Confidence            3444444434667999999999999999988754 5566665433      33333210    00001111 01111 12


Q ss_pred             HhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHH-
Q 024304          161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE-  239 (269)
Q Consensus       161 i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~-  239 (269)
                      + .-..|.|+.+.|+|.||+......||++|+.+++.+++..                    +...+.  .+|+.++.+ 
T Consensus       164 ~-s~~iP~Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i~~aG--------------------P~vI~~--~~ge~~~~e~  220 (523)
T 1on3_A          164 L-SGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITG--------------------PQVIKS--VTGEDVTADE  220 (523)
T ss_dssp             H-TTTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESSC--------------------HHHHHH--HHCCCCCHHH
T ss_pred             h-cCCCCEEEEEcCCCchHHHHHHhhCCeEEEeCCCEEEecC--------------------HHHHHH--HhCCcCChHh
Confidence            2 3459999999999999999988999999999999887642                    211111  456677653 


Q ss_pred             ----HHH--HcCccceecCC-CcHHHHHHHHHHhh
Q 024304          240 ----EAE--KMGLVNTVVPV-SLFVAYLMSLTKCQ  267 (269)
Q Consensus       240 ----eA~--~~GLv~~vv~~-e~l~~~a~~la~~l  267 (269)
                          |.+  +.|++|.++++ +++.+.+.++..-+
T Consensus       221 lggae~h~~~~G~vd~vv~d~~~~~~~~r~lL~~l  255 (523)
T 1on3_A          221 LGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFL  255 (523)
T ss_dssp             HHSHHHHHHTTCCCSEEESSHHHHHHHHHHHHHTS
T ss_pred             cccHHHHhhccCceEEEeCCHHHHHHHHHHHHHhc
Confidence                333  68999999996 45777777765543

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=97.60  E-value=0.002  Score=61.61  Aligned_cols=148  Identities=15%  Similarity=0.117  Sum_probs=95.0

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHH
Q 024304           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (269)
Q Consensus        81 v~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (269)
                      |..+..+..-+..++.....+.+.++++.+.+.. +-+|.|.-.|      |..+.+-.       ....  .+..++..
T Consensus       110 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~-lP~I~l~dSG------GARmqeg~-------~sl~--~~~~i~~~  173 (548)
T 2bzr_A          110 VCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTG-RPLIGINDGA------GARIQEGV-------VSLG--LYSRIFRN  173 (548)
T ss_dssp             EEEEEECTTSGGGCCCHHHHHHHHHHHHHHHHHT-CCEEEEECCC------SCCGGGTT-------HHHH--HHHHHHHH
T ss_pred             EEEEEEcCccccCCCChhHHHHHHHHHHHHHHcC-CCEEEEEcCC------CCCchhHH-------HHHH--HHHHHHHH
Confidence            3333333333567999999999999999988754 5577776533      44433210       0000  11112222


Q ss_pred             Hh--cCCCcEEEEEcCcccccchhhhhcccEEEEeCC-ceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCC
Q 024304          161 IR--RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT  237 (269)
Q Consensus       161 i~--~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~  237 (269)
                      +.  .-..|.|+.+.|+|.||+......||++|+.++ +.+++.                    |+...+.  .+|+.++
T Consensus       174 ~~~~s~~iP~Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~~a--------------------GP~vI~~--~~ge~v~  231 (548)
T 2bzr_A          174 NILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT--------------------GPDVIKT--VTGEEVT  231 (548)
T ss_dssp             HHHTTTTSCEEEEECSEEESGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHHH--HHCCCCC
T ss_pred             HHHhcCCCcEEEEecCCCchHHHHHHHhCCeEEeccCceeEEec--------------------cHHHHHH--HhCCcCC
Confidence            22  344999999999999999988889999999987 888764                    2211111  4566776


Q ss_pred             HH-----HHH--HcCccceecCCC-cHHHHHHHHHHh
Q 024304          238 AE-----EAE--KMGLVNTVVPVS-LFVAYLMSLTKC  266 (269)
Q Consensus       238 a~-----eA~--~~GLv~~vv~~e-~l~~~a~~la~~  266 (269)
                      .+     |.+  +.|++|.++++| ++.+.+.++..-
T Consensus       232 ~e~lggae~h~~~sG~~d~vv~d~~~~~~~~r~lls~  268 (548)
T 2bzr_A          232 MEELGGAHTHMAKSGTAHYAASGEQDAFDYVRELLSY  268 (548)
T ss_dssp             HHHHHBHHHHHHTSSCCSEEESSHHHHHHHHHHHHTT
T ss_pred             hHhcccHHHHhhccCceeEEeCCHHHHHHHHHHHHHh
Confidence            54     323  689999999864 577777666543

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=97.58  E-value=0.0015  Score=62.05  Aligned_cols=154  Identities=19%  Similarity=0.165  Sum_probs=97.0

Q ss_pred             cCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304           78 GEGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (269)
Q Consensus        78 ~~gv~~I~lnrp-~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~  156 (269)
                      ++.-..|.-+.. -...++.....+.+.++++.+.+.. +-+|.|.-.|      |.-+.+-.    ..-..+.+ -+..
T Consensus        89 ~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~-~P~I~l~~SG------GaRmqeg~----~sl~~~~~-i~~~  156 (522)
T 1x0u_A           89 DGRTVFAYAQDFTVLGGSLGETHANKIVRAYELALKVG-APVVGINDSG------GARIQEGA----LSLEGYGA-VFKM  156 (522)
T ss_dssp             TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCC------SBCGGGTH----HHHHHHHH-HHHH
T ss_pred             CCEEEEEEEecCceeCccccHHHHHHHHHHHHHHHHcC-CCEEEEEcCC------CCChhHHH----HHHHHHHH-HHHH
Confidence            443334444444 3567999999999999999988753 5677776544      44333211    00001111 0111


Q ss_pred             HHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC-c-eEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCC
Q 024304          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-A-IFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLAR  234 (269)
Q Consensus       157 l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~-a-~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~  234 (269)
                      + ..+ .-..|.|+.+.|+|.||+......||++|+.++ + .+++..+.           .+..           .+|+
T Consensus       157 ~-~~~-s~~iP~Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~aGP~-----------vI~~-----------~~ge  212 (522)
T 1x0u_A          157 N-VMA-SGVIPQITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFVTGPE-----------ITKV-----------VLGE  212 (522)
T ss_dssp             H-HHH-TTTSCEEEEECSEEEGGGGHHHHHSSEEEEECSTTCEEESSCHH-----------HHHH-----------TTCC
T ss_pred             H-HHh-CCCCcEEEEEcCCCchHHHHHHhcCCeEEEecCCccEEEecCHH-----------HHHH-----------HhCC
Confidence            1 122 345999999999999999998899999999988 8 77662211           1111           4566


Q ss_pred             CCCHH-----HHH--HcCccceecCC-CcHHHHHHHHHHhh
Q 024304          235 FYTAE-----EAE--KMGLVNTVVPV-SLFVAYLMSLTKCQ  267 (269)
Q Consensus       235 ~i~a~-----eA~--~~GLv~~vv~~-e~l~~~a~~la~~l  267 (269)
                      .++.+     |.+  +.|++|.++++ +++.+.+.++..-+
T Consensus       213 ~~~~e~lggae~~~~~~G~~d~vv~~~~~~~~~~~~ll~~l  253 (522)
T 1x0u_A          213 EVSFQDLGGAVVHATKSGVVHFMVDSEQEAINLTKRLLSYL  253 (522)
T ss_dssp             CCCHHHHHBHHHHHHTTCCCSEEESCHHHHHHHHHHHHHHS
T ss_pred             cCChhhcchHHHHhhcCceeEEEeCCHHHHHHHHHHHHHhc
Confidence            77653     323  68999999996 45777777766543

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=97.47  E-value=0.003  Score=60.28  Aligned_cols=153  Identities=21%  Similarity=0.219  Sum_probs=97.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHH
Q 024304           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (269)
Q Consensus        81 v~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (269)
                      |.++..+..-+..++.+...+.+.++++.+.+.. +=+|.|.-.|+ ++.. ..-..+..     ...+.  .+..-+..
T Consensus       123 v~V~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~~-lPvI~l~dSgG-ARl~-~q~~~~~~-----~~~~~--~i~~~~~~  192 (555)
T 3u9r_B          123 CMIVGNDATVKGGTYYPLTVKKHLRAQAIALENR-LPCIYLVDSGG-ANLP-RQDEVFPD-----REHFG--RIFFNQAN  192 (555)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCCC-BCGG-GGGGTSSS-----TTSTT--HHHHHHHH
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHcC-CCEEEEECCCC-CCCC-Ccceeecc-----cccHH--HHHHHHHH
Confidence            4444444444567899999999999999998764 45666654442 3321 00000100     00011  12222345


Q ss_pred             HhcCCCcEEEEEcCcccccchhhhhcccEEEEeC-CceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHH
Q 024304          161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD-NAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE  239 (269)
Q Consensus       161 i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~-~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~  239 (269)
                      +.....|+|+.|.|+|.|||......||++|+.+ ++.+.+.                    |+...+  ..+|+.++++
T Consensus       193 ls~~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i~~a--------------------GP~vik--~~~ge~~~~e  250 (555)
T 3u9r_B          193 MSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIFLA--------------------GPPLVK--AATGEVVSAE  250 (555)
T ss_dssp             HHHTTCCEEEEECSCCBGGGGHHHHTSSEEEEETTTCBCBSS--------------------CHHHHH--HHHCCCCCHH
T ss_pred             HhcCCCCEEEEEecCCCccHHHHHHhCCceEEecCCceEEEc--------------------cHHHHH--HHhcCccChh
Confidence            5667899999999999999999999999998886 4555431                    221111  1578899998


Q ss_pred             HH-------HHcCccceecCCCc-HHHHHHHHHH
Q 024304          240 EA-------EKMGLVNTVVPVSL-FVAYLMSLTK  265 (269)
Q Consensus       240 eA-------~~~GLv~~vv~~e~-l~~~a~~la~  265 (269)
                      +.       .+.|++|.++++|+ ..+.++++..
T Consensus       251 ~LGGa~~h~~~sGv~d~v~~de~~a~~~~r~~ls  284 (555)
T 3u9r_B          251 ELGGADVHCKVSGVADHYAEDDDHALAIARRCVA  284 (555)
T ss_dssp             HHHBHHHHHHTTCSCSEEESSHHHHHHHHHHHHH
T ss_pred             hccchhhhhhccCceeEEeCCHHHHHHHHHHHHH
Confidence            88       78999999998754 3445555544

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=97.37  E-value=0.0027  Score=60.39  Aligned_cols=167  Identities=18%  Similarity=0.191  Sum_probs=104.9

Q ss_pred             cCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304           78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (269)
Q Consensus        78 ~~gv~~I~lnrp~-~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~  156 (269)
                      ++.-..|.-|++. ...+++.+..+.+.+.++.+.+. ++=+|.|.-.++  |..|.+-+...         . ......
T Consensus       323 ~G~~V~via~d~~~~gG~l~~~~~~K~ar~i~~a~~~-~~Plv~l~ds~G--~~~G~~~E~~G---------~-~~~~Ak  389 (522)
T 1x0u_A          323 AGNVVGIVANNPEEFGGSIDIDAADKAARFIRFCDAF-NIPLISLVDTPG--YVPGTDQEYKG---------I-IRHGAK  389 (522)
T ss_dssp             TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEECC--BCCSHHHHHTT---------H-HHHHHH
T ss_pred             CCEEEEEEEECCCccCCCcCHHHHHHHHHHHHHHhhC-CCCEEEEecCCC--CCCchHHHHHH---------H-HHHHHH
Confidence            4444444445544 33589999999999999988654 466777765442  55554433211         1 112344


Q ss_pred             HHHHHhcCCCcEEEEEcCcccccchhhhh----cccEEEEeCCceEecCCCCcccCCCChHHHHHHhhh-C---------
Q 024304          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHM----VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV-G---------  222 (269)
Q Consensus       157 l~~~i~~~~kP~Ia~v~G~a~GgG~~lal----~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~-G---------  222 (269)
                      ++..+.....|.|+.|-|.|.|||+....    .+|+++|.+++.++.-.+.       +.+..+-+.. -         
T Consensus       390 ~l~~~~~~~vP~Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v~gpe-------gaa~Il~r~~i~~~~d~~~~~  462 (522)
T 1x0u_A          390 MLYAFAEATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVTGPE-------GAVRILYRKEIQQASNPDDVL  462 (522)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHHHHTCCGGGTCSEEEECTTCEEESSCHH-------HHHHHHTSSSSSSSSSSSSSS
T ss_pred             HHHHHHhCCCCEEEEEeCCcccHHHHHhcccccCCCEEEEeCCCEEEecCHH-------HHHHHHhhhhhhcccCHHHHH
Confidence            56677889999999999999999874333    4999999999988764333       2222222211 0         


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHh
Q 024304          223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKC  266 (269)
Q Consensus       223 ~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~  266 (269)
                      .....++  .-..-++..+.+.|+||.|+++.++.+...+..+.
T Consensus       463 ~~l~~~y--~~~~~~~~~~~~~G~iD~II~p~~tR~~L~~~L~~  504 (522)
T 1x0u_A          463 KQRIAEY--RKLFANPYWAAEKGLVDDVIEPKDTRRVIVAGLEM  504 (522)
T ss_dssp             HHHHHHH--HHHHSSSHHHHHTTSSSEECCGGGHHHHHHHHHHH
T ss_pred             HHHHHHH--HHhcCCHHHHHhcCCCcEeECHHHHHHHHHHHHHH
Confidence            1111111  01124557799999999999998877766655444

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=97.17  E-value=0.0061  Score=57.99  Aligned_cols=168  Identities=15%  Similarity=0.168  Sum_probs=102.8

Q ss_pred             cCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304           78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (269)
Q Consensus        78 ~~gv~~I~lnrp~-~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~  156 (269)
                      ++.-.-|.=|++. ...+++++-.....+.++.+++ .++=+|.|.=..  .|..|.+-+...         . ......
T Consensus       328 ~G~~V~via~~~~~~~G~~~~~~~~Kaar~i~~a~~-~~~Plv~lvDtp--G~~~G~~~E~~g---------~-~~~~A~  394 (527)
T 1vrg_A          328 QGKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDA-FNIPILTFVDTP--GYLPGVAQEHGG---------I-IRHGAK  394 (527)
T ss_dssp             TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEEC--CBCCCHHHHHTT---------H-HHHHHH
T ss_pred             CCEEEEEEEEcCcccCCCCCHHHHHHHHHHHHHHhh-cCCCeEEEecCC--CCcCchhhHHhH---------H-HHHHHH
Confidence            4433444444444 3358999999999999988754 445566664433  355554433311         1 112345


Q ss_pred             HHHHHhcCCCcEEEEEcCcccccchhhhh----cccEEEEeCCceEecCCCCcccCCCChHHHHHHhhh-----CHHHHH
Q 024304          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHM----VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV-----GPKKAR  227 (269)
Q Consensus       157 l~~~i~~~~kP~Ia~v~G~a~GgG~~lal----~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~-----G~~~a~  227 (269)
                      ++..+.....|+|+.|-|.|.|||+.-..    .+|+++|.+++.++.       .++.+.+..+-+.-     .....+
T Consensus       395 ~~~a~~~~~vP~isvI~g~~~gGg~~am~~~~~~~d~~~a~p~a~~~V-------m~pegaa~Il~r~~~~~~~d~~~~~  467 (527)
T 1vrg_A          395 LLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAV-------MGPEGAANIIFKREIEASSNPEETR  467 (527)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHHSSCHHHHH
T ss_pred             HHHHHhcCCCCEEEEEeCCcccHHHHHhcCCCCCCCEEEEcCCCeEEe-------cCHHHHHHHHhhhhhhcccCHHHHH
Confidence            66677889999999999999988874333    389999888888865       33333443333211     111111


Q ss_pred             -HHH--HcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHH
Q 024304          228 -EMW--FLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTK  265 (269)
Q Consensus       228 -~l~--ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~  265 (269)
                       ++.  +.-+.-++..+.+.|+||.|+++.+..+...+..+
T Consensus       468 ~~~~~~y~~~~~~p~~~~~~g~iD~II~p~~tR~~l~~~L~  508 (527)
T 1vrg_A          468 RKLIEEYKQQFANPYIAASRGYVDMVIDPRETRKYIMRALE  508 (527)
T ss_dssp             HHHHHHHHHHTSSHHHHHHTTSSSEECCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCHHHHHHcCCCCeeeCHHHHHHHHHHHHH
Confidence             122  11224677889999999999998776665544333

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=97.11  E-value=0.0077  Score=57.26  Aligned_cols=149  Identities=17%  Similarity=0.184  Sum_probs=91.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHH
Q 024304           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (269)
Q Consensus        81 v~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (269)
                      |..+..+..-+..++.....+.+.++++.+.+.. +-+|.|.-.|+ ++.     .+-.    .......+ .+..+  .
T Consensus       100 v~v~a~D~t~~gGS~g~~~~~Ki~r~~e~A~~~~-lPvI~l~dSgG-AR~-----qeg~----~~l~g~~~-~~~~~--~  165 (527)
T 1vrg_A          100 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMG-IPVIGINDSGG-ARI-----QEGV----DALAGYGE-IFLRN--T  165 (527)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEEECS-BCG-----GGTH----HHHHHHHH-HHHHH--H
T ss_pred             EEEEEEeccccCccccHHHHHHHHHHHHHHHHcC-CCEEEEECCCC-CCc-----cchh----HHHHHHHH-HHHHH--H
Confidence            4444444333567999999999999999887654 44555544332 332     2100    00001111 01111  2


Q ss_pred             HhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC-ceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHH
Q 024304          161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE  239 (269)
Q Consensus       161 i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~  239 (269)
                      ......|+|+.|.|+|.|||......||++|+.++ +.+++.                    |+...+.  .+|+.++.+
T Consensus       166 ~~s~~iP~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~i~~a--------------------GP~vi~~--~~ge~v~~e  223 (527)
T 1vrg_A          166 LASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFIT--------------------GPNVIKA--VTGEEISQE  223 (527)
T ss_dssp             HHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSS--------------------CHHHHHH--HHCCCCCHH
T ss_pred             HhCCCCCEEEEEeCCCchHHHHHHHcCCeEEEecCceEEEec--------------------CHHHHHH--HhCCCCCcc
Confidence            22566999999999999999988889999999988 775541                    2211111  446666653


Q ss_pred             -----HHH--HcCccceecCCC-cHHHHHHHHHH
Q 024304          240 -----EAE--KMGLVNTVVPVS-LFVAYLMSLTK  265 (269)
Q Consensus       240 -----eA~--~~GLv~~vv~~e-~l~~~a~~la~  265 (269)
                           |.+  +.|++|.++++| ++.+.+.++..
T Consensus       224 ~lggae~~~~~~G~vd~vv~d~~~~~~~~~~~Ls  257 (527)
T 1vrg_A          224 DLGGAMVHNQKSGNAHFLADNDEKAMSLVRTLLS  257 (527)
T ss_dssp             HHHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHT
T ss_pred             ccccHHHHhhcccceEEEecCHHHHHHHHHHHHH
Confidence                 333  689999999964 56666666654

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=96.99  E-value=0.0072  Score=58.06  Aligned_cols=176  Identities=16%  Similarity=0.125  Sum_probs=102.5

Q ss_pred             cCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304           78 GEGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (269)
Q Consensus        78 ~~gv~~I~lnrp-~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~  156 (269)
                      ++.-..|.-|.. -+..++.+...+.+.++++.+.+.. +=+|.|.-.|+ ++..  +.+.... ..   ....+  +..
T Consensus       104 ~Gr~V~V~a~D~tv~gGS~g~~~~~Ki~Ra~e~A~~~~-lPvI~l~dSgG-Arl~--~qe~~~~-~l---~~~g~--if~  173 (588)
T 3gf3_A          104 DGKWVYIVASDNKKMAGAWVPGQAENLIRCSDAAKMMH-LPLIYLLNCSG-VEFP--NQDKVYP-NR---RGGGT--PFF  173 (588)
T ss_dssp             TTEEEEEEEECTTSGGGCBCTTHHHHHHHHHHHHHHHT-CCEEEEECCCC-BCGG--GHHHHSS-ST---TSTTH--HHH
T ss_pred             CCEEEEEEEECCcccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEcCCC-cCcc--ccccccc-ch---hhHHH--HHH
Confidence            443333444443 3557899999999999999987654 45666654442 4431  1111100 00   00011  222


Q ss_pred             HHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCc--ccCCCChHHHHHHh---hhCHHHHHHHHH
Q 024304          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV--GSFDAGYGSSIMSR---LVGPKKAREMWF  231 (269)
Q Consensus       157 l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~--Gl~p~~g~~~~l~r---~~G~~~a~~l~l  231 (269)
                      -+..+.....|+|+.|-|+|.|||...++.+|++++.+++.+++..+.+  |+-|.+  . ..+.   .+......+-..
T Consensus       174 ~~~~ls~~~iP~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~g--~-~~~~~~~~~~~~~~ge~~v  250 (588)
T 3gf3_A          174 RNSELNQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPKG--Y-IDDEAAEQIIAAQIENSKL  250 (588)
T ss_dssp             HHHHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC------------------CHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCCCEEEEEeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCccc--c-ccccchhhhhhhhcccccc
Confidence            2345556789999999999999988668888999999999998866553  111111  0 1111   000111112124


Q ss_pred             cCCCCCHHHHH--HcCccceecCCCc-HHHHHHHHHHh
Q 024304          232 LARFYTAEEAE--KMGLVNTVVPVSL-FVAYLMSLTKC  266 (269)
Q Consensus       232 tg~~i~a~eA~--~~GLv~~vv~~e~-l~~~a~~la~~  266 (269)
                      +.+.+.+.+.+  .-|.+|.++++|+ ..+.++++..-
T Consensus       251 s~eeLGGa~~h~~~sGv~d~~a~de~~al~~~r~~ls~  288 (588)
T 3gf3_A          251 KVPAPGSVPIHYDETGFFREVYQNDLGVIDGIKKYISY  288 (588)
T ss_dssp             TCCCTTBHHHHTTTSCCSCEEESSHHHHHHHHHHHHHT
T ss_pred             ChhhccchhhhccccccceEEeCCHHHHHHHHHHHHHh
Confidence            67778888877  5899999998764 66666666543

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=96.89  E-value=0.016  Score=55.08  Aligned_cols=168  Identities=17%  Similarity=0.119  Sum_probs=103.5

Q ss_pred             cCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304           78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (269)
Q Consensus        78 ~~gv~~I~lnrp~-~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~  156 (269)
                      ++.-.-|.=|+|. ...+++++-.....+.++.++. .++=+|.|.=..  .|..|.+-+...         . ......
T Consensus       324 ~G~~Vgvian~~~~~~G~~~~~~a~Kaar~i~~~~~-~~iPlv~lvDtp--Gf~~G~~~E~~G---------i-~~~~A~  390 (523)
T 1on3_A          324 NGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDS-FNIPLVQLVDVP--GFLPGVQQEYGG---------I-IRHGAK  390 (523)
T ss_dssp             TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEEC--CBCCCHHHHHTT---------H-HHHHHH
T ss_pred             CCEEEEEEEecCCccCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeCC--CcCcchHHHHhh---------H-HHHHHH
Confidence            4433444444544 2358999999999999988754 445566664433  366665443311         1 122445


Q ss_pred             HHHHHhcCCCcEEEEEcCcccccchhhhhc----ccEEEEeCCceEecCCCCcccCCCChHHHHHHhhh-----CHHHHH
Q 024304          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMV----CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV-----GPKKAR  227 (269)
Q Consensus       157 l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~----~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~-----G~~~a~  227 (269)
                      ++..+.....|+|+.|-|.+.|||+.-...    +|+++|.+++.++.       .++.+.+..+-+.-     .....+
T Consensus       391 ~l~a~a~~~vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~V-------m~pegaa~Il~r~~~~~~~d~~~~~  463 (523)
T 1on3_A          391 MLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAV-------MGAEGAANVIFRKEIKAADDPDAMR  463 (523)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHHSSCHHHHH
T ss_pred             HHHHHhcCCCCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCCCeEEe-------cCHHHHHHHHhhhhhhcccCHHHHH
Confidence            667788899999999999999988754433    89988888888765       33333444433221     111111


Q ss_pred             -HHHH--cCCCCCHHHHHHcCccceecCCCcHHHHHHHHHH
Q 024304          228 -EMWF--LARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTK  265 (269)
Q Consensus       228 -~l~l--tg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~  265 (269)
                       ++.-  .-..-++..+.+.|+||.|+++.+..+...+..+
T Consensus       464 ~~~~~~y~~~~~~p~~~a~~g~iD~II~p~~tR~~l~~~L~  504 (523)
T 1on3_A          464 AEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALE  504 (523)
T ss_dssp             HHHHHHHHHHHSSHHHHHHTTSSSEECCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCHHHHHhcCCCCEeeCHHHHHHHHHHHHH
Confidence             1211  1113567889999999999998876665544433

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=96.76  E-value=0.034  Score=53.09  Aligned_cols=167  Identities=19%  Similarity=0.207  Sum_probs=100.9

Q ss_pred             cCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304           78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (269)
Q Consensus        78 ~~gv~~I~lnrp~-~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~  156 (269)
                      ++.-.-|.=|++. ...+++++-.....+.++.++. .++=+|.|-=..  .|..|.+.+...         . ......
T Consensus       345 ~G~~Vgvian~~~~~~G~l~~~~a~Kaar~i~~a~~-~~iPlv~lvDt~--Gf~~G~~~E~~G---------i-~~~ga~  411 (548)
T 2bzr_A          345 DGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDC-FNIPIVMLVDVP--GFLPGTDQEYNG---------I-IRRGAK  411 (548)
T ss_dssp             TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEEC--CBCCCHHHHHTT---------H-HHHHHH
T ss_pred             CCEEEEEEEECCcccCCCCCHHHHHHHHHHHHHHHh-cCCCEEEEeecc--CCCCChHHHHhh---------H-HHHHHH
Confidence            4433334444444 3358999999999998888864 445566664433  366665544321         1 112345


Q ss_pred             HHHHHhcCCCcEEEEEcCcccccchhhh----hcccEEEEeCCceEecCCCCcccCCCChHHHHHHhh-hCH------H-
Q 024304          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLH----MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL-VGP------K-  224 (269)
Q Consensus       157 l~~~i~~~~kP~Ia~v~G~a~GgG~~la----l~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~-~G~------~-  224 (269)
                      ++..+.....|+|+.|-|.|.|||+--.    +.+|++++.+++.++.-.       +.+.+..+.+. +-.      . 
T Consensus       412 ~l~a~~~~~VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~Vmg-------pegaa~Il~r~~~~~~~~~g~~~  484 (548)
T 2bzr_A          412 LLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVMG-------ASGAVGFVYRQQLAEAAANGEDI  484 (548)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSC-------HHHHHHHHTCCC----------C
T ss_pred             HHHHHhCCCCCEEEEEeCCcchHHHHHhccccCCCCEEEEcCCCEEEecC-------HHHHHHHHhhhHHhhhhcccccH
Confidence            5667788999999999999999887433    349999999998887532       23333333321 100      0 


Q ss_pred             -HH-HHHHH--cCCCCCHHHHHHcCccceecCCCcHHHHHHHHH
Q 024304          225 -KA-REMWF--LARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLT  264 (269)
Q Consensus       225 -~a-~~l~l--tg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la  264 (269)
                       .. .++.-  .-...++..+.+.|+||.|+++.+......+-.
T Consensus       485 ~~~~~~~~~~y~~~~~~p~~~a~~g~iD~II~p~~tR~~l~~~L  528 (548)
T 2bzr_A          485 DKLRLRLQQEYEDTLVNPYVAAERGYVGAVIPPSHTRGYIGTAL  528 (548)
T ss_dssp             HHHHHHHHHHHHHHHSBSHHHHHTTSSSEECCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCHHHHHhcCCCceeeCHHHHHHHHHHHH
Confidence             11 11211  011244567899999999999887666554433

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=96.42  E-value=0.076  Score=51.03  Aligned_cols=151  Identities=9%  Similarity=0.099  Sum_probs=99.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEE
Q 024304           92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM  171 (269)
Q Consensus        92 ~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~  171 (269)
                      ...++++-.....+.++.++. .++=+|.|.=..  .|..|.+-+...         . ......+...+..+..|+|+.
T Consensus       384 ~G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDtp--Gf~~G~~~E~~G---------i-~~~gA~~~~a~a~a~vP~itv  450 (587)
T 1pix_A          384 GGKLYRQGLVKMNEFVTLCAR-DRLPIVWIQDTT--GIDVGNDAEKAE---------L-LGLGQSLIYSIQTSHIPQFEI  450 (587)
T ss_dssp             TTEECHHHHHHHHHHHHHHHH-TTCCEEEEECCC--EECCSHHHHHTT---------H-HHHHHHHHHHHHTCCCCEEEE
T ss_pred             CCCcCHHHHHHHHHHHHHhhc-CCCCeEEEecCC--CCCCcHHHHHHH---------H-HHHHHHHHHHHHhCCCCEEEE
Confidence            458999999999999986654 556677776543  477775543311         1 223556778899999999999


Q ss_pred             EcCcccccchhhhhc-----c--cEEEEeCCceEecCCCCcccCCCChHHHHHHhh-hCH---------HHH---HHHHH
Q 024304          172 VAGYAVGGGHVLHMV-----C--DLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL-VGP---------KKA---REMWF  231 (269)
Q Consensus       172 v~G~a~GgG~~lal~-----~--D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~-~G~---------~~a---~~l~l  231 (269)
                      |-|.+.|||+ ++++     +  |++++.+++.++.       ..+.+.+..+-+. .-.         ..+   .++.-
T Consensus       451 I~g~~~Ggg~-~am~~~~~~~~~d~~~a~p~A~~~V-------m~pegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~~~  522 (587)
T 1pix_A          451 TLRKGTAAAH-YVLGGPQGNDTNAFSIGTAATEIAV-------MNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQ  522 (587)
T ss_dssp             ECSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEES-------SCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             EcCCCccHHH-HHhcCcccCcccceeeeccCCeEec-------CCHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHHH
Confidence            9999998885 4554     5  9999999888875       2233334333321 100         000   11110


Q ss_pred             -cCCCCCHHHHHHcCccceecCCCcHHHHHHHH
Q 024304          232 -LARFYTAEEAEKMGLVNTVVPVSLFVAYLMSL  263 (269)
Q Consensus       232 -tg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~l  263 (269)
                       --+..++..|.+.|+||.|+++.+........
T Consensus       523 ~y~~~~~p~~aa~~g~iD~VI~p~~tR~~l~~~  555 (587)
T 1pix_A          523 AFYTKSRPKVCAELGLVDEIVDMNKIRGYVEAF  555 (587)
T ss_dssp             HHHHTTSHHHHHHHTSSSEECCTTTHHHHHHHH
T ss_pred             HHHHhCCHHHHHhcCCCccccCHHHHHHHHHHH
Confidence             01258899999999999999988766654443

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=96.22  E-value=0.1  Score=49.49  Aligned_cols=165  Identities=17%  Similarity=0.171  Sum_probs=100.4

Q ss_pred             cCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304           78 GEGIAKITINRPDR-RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (269)
Q Consensus        78 ~~gv~~I~lnrp~~-~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~  156 (269)
                      ++.-.-|.=|+|.. ...++++-.....+.++.++. -++=+|.|.=..  .|-.|.+.+...         . ......
T Consensus       336 ~G~~Vgvian~~~~~~G~l~~~~a~Kaarfi~lcd~-~~iPlv~lvDtp--Gf~~G~~~E~~G---------i-~~~gAk  402 (531)
T 3n6r_B          336 EGRTVGVVANQPLVLAGCLDIDSSRKAARFVRFCDA-FEIPLLTLIDVP--GFLPGTSQEYGG---------V-IKHGAK  402 (531)
T ss_dssp             TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEEC--SBCCSHHHHHTT---------H-HHHHHH
T ss_pred             CCEEEEEEEecccccCCCCCHHHHHHHHHHHHHhhc-cCCCEEEEeCCC--CCCCCHHHHHhh---------H-HHHHHH
Confidence            44444444555542 258999999999998887765 345666665433  355565433311         1 223456


Q ss_pred             HHHHHhcCCCcEEEEEcCcccccchhhhh----cccEEEEeCCceEecCCCCcccCCCChHHHHHHh-hhCH-HHHHHHH
Q 024304          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHM----VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR-LVGP-KKAREMW  230 (269)
Q Consensus       157 l~~~i~~~~kP~Ia~v~G~a~GgG~~lal----~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r-~~G~-~~a~~l~  230 (269)
                      ++..+.....|+|+.|-|.+.|||+.-..    .+|+++|.+++.++.-.       +.+++..+-+ .+-. ....++.
T Consensus       403 ~l~a~a~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~Vm~-------pegaa~Il~r~~~~~~~~~~~~~  475 (531)
T 3n6r_B          403 LLYAYGEATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVAVMG-------AKGATEIIHRGDLGDPEKIAQHT  475 (531)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSC-------HHHHHHHHCCTTTTSTTHHHHHH
T ss_pred             HHHHHHhCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceEecCC-------HHHHHHHHhcccccchhHHHHHH
Confidence            77788899999999999999998874333    39999999998887532       2223333322 1100 0001111


Q ss_pred             --HcCCCCCHHHHHHcCccceecCCCcHHHHHHH
Q 024304          231 --FLARFYTAEEAEKMGLVNTVVPVSLFVAYLMS  262 (269)
Q Consensus       231 --ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~  262 (269)
                        +.-+..++..|.+.|++|.|+++.+-.....+
T Consensus       476 ~~y~~~~~~p~~aa~~~~vD~vIdP~~TR~~l~~  509 (531)
T 3n6r_B          476 ADYEERFANPFVASERGFVDEVIQPRSTRKRVAR  509 (531)
T ss_dssp             HHHHHHHSSSHHHHHHTSSSEECCGGGHHHHHHH
T ss_pred             HHHHHHhcCHHHHHhcCccCcccCHHHHHHHHHH
Confidence              11122455578899999999998876665443

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=96.11  E-value=0.16  Score=48.13  Aligned_cols=163  Identities=18%  Similarity=0.175  Sum_probs=101.2

Q ss_pred             cCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304           78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (269)
Q Consensus        78 ~~gv~~I~lnrp~-~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~  156 (269)
                      ++.-.-|.=|+|. ...+++++......+.++.++.. ++=+|.|.=..  .|-.|.+.+.         .. .......
T Consensus       330 ~G~~Vgvian~~~~~~G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtp--Gf~~G~~~E~---------~g-i~~~~Ak  396 (530)
T 3iav_A          330 EGRPVGIVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVP--GFLPGVDQEH---------DG-IIRRGAK  396 (530)
T ss_dssp             TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC--CBCCCHHHHH---------TT-HHHHHHH
T ss_pred             CCEEEEEEEecCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeeCC--CCCccHHHHH---------hh-HHHHHHH
Confidence            4544445555554 23589999999999999877654 45666665433  2666655332         11 1223456


Q ss_pred             HHHHHhcCCCcEEEEEcCcccccchhhhhc-----ccEEEEeCCceEecCCCCcccCCCChHHHHHHhh-hC------HH
Q 024304          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMV-----CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL-VG------PK  224 (269)
Q Consensus       157 l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~-----~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~-~G------~~  224 (269)
                      ++..+.....|+|+.|-|.+.|||+ ++++     .|+++|.+++.++.-.       +.+.+..+-+. +-      ..
T Consensus       397 ~l~a~a~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~a~~~Vm~-------~egaa~il~r~~~~~~~~d~~~  468 (530)
T 3iav_A          397 LIFAYAEATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPTAQIAVMG-------AQGAVNILHRRTIADAGDDAEA  468 (530)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEESSC-------HHHHHHHHTSTTTSTTCTTCHH
T ss_pred             HHHHHHhCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCCceEecCC-------HHHHHHHHhhhhhhhcccCHHH
Confidence            7778889999999999999998776 4443     7999999998887532       22333333221 10      11


Q ss_pred             HHHHHH--HcCCCCCHHHHHHcCccceecCCCcHHHHHH
Q 024304          225 KAREMW--FLARFYTAEEAEKMGLVNTVVPVSLFVAYLM  261 (269)
Q Consensus       225 ~a~~l~--ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~  261 (269)
                      .-.++.  +.-+..++..|.+.|++|.|+++.+......
T Consensus       469 ~~~~~~~~y~~~~~~p~~aa~~~~vD~VIdP~~TR~~l~  507 (530)
T 3iav_A          469 TRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIV  507 (530)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHTTSSSEECCGGGHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHhcCCCCcccCHHHHHHHHH
Confidence            111111  1111246677889999999999877665543

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=95.53  E-value=0.025  Score=55.54  Aligned_cols=78  Identities=17%  Similarity=0.116  Sum_probs=53.2

Q ss_pred             CCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCC--CHHHH
Q 024304          164 LPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFY--TAEEA  241 (269)
Q Consensus       164 ~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i--~a~eA  241 (269)
                      -..|+|+.|.|+|.|||.-+...||++|+.+++.+.+..+           ..+..           .+|+.+  +.++.
T Consensus       245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~ifltGP-----------~vIk~-----------~tGeeV~~s~eeL  302 (758)
T 3k8x_A          245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTGA-----------PAINK-----------MLGREVYTSNLQL  302 (758)
T ss_dssp             TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCEESSCH-----------HHHHH-----------HHTSCCCSCTHHH
T ss_pred             cCCCEEEEEccCCchHHHHHHhhCCEEEEECCceEEEeCH-----------HHHHH-----------HhCCccccCchhc
Confidence            4679999999999999999999999999999875443211           11111           245544  33322


Q ss_pred             ------HHcCccceecCCC-cHHHHHHHH
Q 024304          242 ------EKMGLVNTVVPVS-LFVAYLMSL  263 (269)
Q Consensus       242 ------~~~GLv~~vv~~e-~l~~~a~~l  263 (269)
                            ..-|.++.++++| +..+.++++
T Consensus       303 GGA~vh~~sGvad~va~dd~eal~~ir~l  331 (758)
T 3k8x_A          303 GGTQIMYNNGVSHLTAVDDLAGVEKIVEW  331 (758)
T ss_dssp             HSHHHHTTTTSSSEEESSHHHHHHHHHHH
T ss_pred             chhhHHHhcCCeeEEecCHHHHHHHHHHH
Confidence                  3589999999865 344444444

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=95.37  E-value=0.41  Score=45.65  Aligned_cols=149  Identities=11%  Similarity=0.050  Sum_probs=93.6

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEE
Q 024304           93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV  172 (269)
Q Consensus        93 Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v  172 (269)
                      .+++++-.....+.++.++. -++-+|.|.=..  .|..|.+-+...         . ......+...+.....|+|+.|
T Consensus       366 G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDtp--Gf~~G~~~E~~G---------i-~~~gAk~~~a~~~a~vP~itvi  432 (555)
T 3u9r_B          366 GILFAEAAQKGAHFIELACQ-RGIPLLFLQNIT--GFMVGQKYEAGG---------I-AKHGAKLVTAVACARVPKFTVL  432 (555)
T ss_dssp             SSBCHHHHHHHHHHHHHHHH-HTCCEEEEEEEC--CBCCSHHHHHTT---------H-HHHHHHHHHHHHHCCSCEEEEE
T ss_pred             CccCHHHHHHHHHHHHHHhc-CCCCEEEEecCc--CCCCCHHHHHHH---------H-HHHHHHHHHHHHhCCCCEEEEE
Confidence            67999999999998888765 346677776544  366665543311         1 1224566778899999999999


Q ss_pred             cCcccccchhhh----hcccEEEEeCCceEecCCCCcccCCCChHHHHHH---hh----hC----HHH---HHH-HHH-c
Q 024304          173 AGYAVGGGHVLH----MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMS---RL----VG----PKK---ARE-MWF-L  232 (269)
Q Consensus       173 ~G~a~GgG~~la----l~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~---r~----~G----~~~---a~~-l~l-t  232 (269)
                      -|.+.|||..-.    +.+|++++.+++.++.-       .+.+.+..+.   +.    .|    ...   .++ +.- -
T Consensus       433 ~g~~~Ggg~~am~~~~~~~d~~~a~p~A~i~Vm-------gpegaa~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~y  505 (555)
T 3u9r_B          433 IGGSFGAGNYGMCGRAYDPRFLWMWPNARIGVM-------GGEQAAGVLAQVKREQAERAGQQLGVEEEAKIKAPILEQY  505 (555)
T ss_dssp             EEEEETTHHHHTTCGGGCCSEEEECTTCEEESS-------CHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHH
T ss_pred             eCCccchhhHhhcCccCCCCeEEEcCCcEEEcC-------CHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHH
Confidence            999888875322    24799999999888753       2223333332   10    01    100   000 100 0


Q ss_pred             CCCCCHHHHHHcCccceecCCCcHHHHHH
Q 024304          233 ARFYTAEEAEKMGLVNTVVPVSLFVAYLM  261 (269)
Q Consensus       233 g~~i~a~eA~~~GLv~~vv~~e~l~~~a~  261 (269)
                      -+..++-.|.+.|++|.|+++.+-.....
T Consensus       506 ~~~~~p~~aa~r~~vD~vIdP~~TR~~l~  534 (555)
T 3u9r_B          506 EHQGHPYYSSARLWDDGVIDPAQTREVLA  534 (555)
T ss_dssp             HHHHSHHHHHHTTSSSCBCCGGGHHHHHH
T ss_pred             HHhCCHHHHhhccccCcccChHHHHHHHH
Confidence            11246777788999999999877665443

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=94.97  E-value=0.051  Score=53.81  Aligned_cols=78  Identities=22%  Similarity=0.224  Sum_probs=54.2

Q ss_pred             CCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCC--C----
Q 024304          164 LPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFY--T----  237 (269)
Q Consensus       164 ~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i--~----  237 (269)
                      ...|+|+.|-|.|.|||.-+...||++|+.+++.+.+..+           ..+..           .+|+.+  +    
T Consensus       258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~ltGp-----------~vi~~-----------~~Ge~vy~s~e~L  315 (793)
T 2x24_A          258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHIILTGA-----------TALNK-----------VLGRDVYTSNNQL  315 (793)
T ss_dssp             HHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEESSCH-----------HHHHH-----------HHSSCCCSCHHHH
T ss_pred             CCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEEecCH-----------HHHHH-----------hcCCcccCChhhh
Confidence            4699999999999999999999999999999987765221           11222           233333  2    


Q ss_pred             -HHH-HHHcCccceecCCC-cHHHHHHHH
Q 024304          238 -AEE-AEKMGLVNTVVPVS-LFVAYLMSL  263 (269)
Q Consensus       238 -a~e-A~~~GLv~~vv~~e-~l~~~a~~l  263 (269)
                       +.+ ....|.+|.++++| +..+.+.++
T Consensus       316 GGa~v~~~~Gv~d~vv~dd~ea~~~ir~~  344 (793)
T 2x24_A          316 GGVQIMHHNGVSHVTVPDDFEGVCTILEW  344 (793)
T ss_dssp             HSHHHHTTTTSCSEEESSHHHHHHHHHHH
T ss_pred             ccHHHHHhcCceEEEeCCHHHHHHHHHHH
Confidence             122 45689999999874 344444443

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=94.33  E-value=0.5  Score=45.33  Aligned_cols=152  Identities=13%  Similarity=0.140  Sum_probs=97.1

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEE
Q 024304           93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV  172 (269)
Q Consensus        93 Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v  172 (269)
                      .+++++-.....+.++.++.- ++-+|.|.=..  .|..|.+.++-.         . ......++..+..+..|+|+.|
T Consensus       387 G~l~~~~a~Kaarfi~lcd~f-~iPlv~lvDtp--Gf~~G~~aE~~G---------i-~~~gAk~l~a~a~a~VP~itvI  453 (588)
T 3gf3_A          387 GKLYRQGLIKMNEFVTLCARD-RIPLIWLQDTT--GIDVGDEAEKAE---------L-LGLGQSLIYSIENSKLPSLEIT  453 (588)
T ss_dssp             TEECHHHHHHHHHHHHHHHHT-TCCEEEEECCC--EECCSHHHHHTT---------H-HHHHHHHHHHHHHHCSCEEEEE
T ss_pred             CCcCHHHHHHHHHHHHHhhhc-CCCeEEEecCC--CCCCCHHHHHHH---------H-HHHHHHHHHHHHhCCCCEEEEE
Confidence            478999999998988887753 46677776443  577776544311         1 2234567788899999999999


Q ss_pred             cCcccccchhhhhcc-------cEEEEeCCceEecCCCCcccCCCChHHHHHH-hhh------CH------HHHHHHHH-
Q 024304          173 AGYAVGGGHVLHMVC-------DLTIAADNAIFGQTGPKVGSFDAGYGSSIMS-RLV------GP------KKAREMWF-  231 (269)
Q Consensus       173 ~G~a~GgG~~lal~~-------D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~-r~~------G~------~~a~~l~l-  231 (269)
                      -|.+.|||. +++++       |+++|.+++.++.       .++.+.+..+- +.+      |.      ....++.- 
T Consensus       454 ~g~~~Ggg~-~am~~~~~~~~~~~~~awp~A~~sV-------m~pEgaa~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (588)
T 3gf3_A          454 IRKASAAAH-YVLGGPQGNNTNVFSIGTGACEYYV-------MPGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMIQM  525 (588)
T ss_dssp             SSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEES-------SCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHH
T ss_pred             cCCccHHHH-HHhcccccCCccceEEECCCceEEe-------CCHHHHHHHHhhhHHhhhhccccccchHHHHHHHHHHH
Confidence            999988876 44443       4888888888865       33333343332 211      10      01111110 


Q ss_pred             cCCCCCHHHHHHcCccceecCCCcHHHHHHHHHH
Q 024304          232 LARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTK  265 (269)
Q Consensus       232 tg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~  265 (269)
                      --+..++-.|.+.|++|.|+++.+.......+..
T Consensus       526 y~~~~~p~~aA~r~~vD~VIdP~~TR~~l~~~~~  559 (588)
T 3gf3_A          526 YTDKSRPKYCTEKGMVDEIVDMTEVRPYIQAFTE  559 (588)
T ss_dssp             HHHTTSHHHHHHTTSSSEECCGGGHHHHHHHHHH
T ss_pred             HHHhCCHHHHHhcCCCCeeeCHHHHHHHHHHHHH
Confidence            0113588889999999999999887766655443

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=87.91  E-value=4.9  Score=39.81  Aligned_cols=95  Identities=13%  Similarity=0.141  Sum_probs=66.1

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEE
Q 024304           93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV  172 (269)
Q Consensus        93 Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v  172 (269)
                      ..++++-.....+.+..++ ..++=+|.|.=..  .|..|.+-+...         . ......+...+..+..|+|+.|
T Consensus       462 G~l~~~~a~KaarfI~~cd-~f~iPlv~LvDtp--Gf~~G~~aE~~G---------i-~~~gAkll~A~a~a~VP~itvI  528 (793)
T 2x24_A          462 QVWFPDSAYKTAQAIKDFN-REKLPLMIFANWR--GFSGGMKDMYDQ---------V-LKFGAYIVDGLRKYRQPVLIYI  528 (793)
T ss_dssp             TEECHHHHHHHHHHHHHHH-TTTCCEEEECCBC--EECCSHHHHHTT---------H-HHHHHHHHHHHHTCCSCEEEEE
T ss_pred             CcccHHHHHHHHHHHHHhc-cCCCCEEEEecCC--CCCCCHHHHHhh---------H-HHHHHHHHHHHHhcCCCEEEEE
Confidence            4799999999999999986 4556677776543  577775543311         1 1235567788999999999999


Q ss_pred             --cCcccccchhhh---hcccE--EEEeCCceEec
Q 024304          173 --AGYAVGGGHVLH---MVCDL--TIAADNAIFGQ  200 (269)
Q Consensus       173 --~G~a~GgG~~la---l~~D~--~ia~~~a~f~~  200 (269)
                        .|.+.||.+.+.   +..|+  ++|.+++.++.
T Consensus       529 ~r~Ge~~GGa~~~~~~~~~~d~~ev~Awp~A~~~V  563 (793)
T 2x24_A          529 PPYAEVRGGSWAVMDTSINPLCIEMYADRESRASV  563 (793)
T ss_dssp             CTTCEEEHHHHHTTCGGGSTTTEEEEEETTCEEES
T ss_pred             ecCCcccchhHHhhhcccCccHHHHhhhccCEEEe
Confidence              888876654332   35676  67777777765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	269
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	7e-45
d1q52a_	297	c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter	2e-29
d1uiya_	253	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The	1e-28
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	5e-24
d1nzya_	269	c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps	1e-22
d1hzda_	266	c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T	2e-20
d1wdka4	310	c.14.1.3 (A:1-310) Fatty oxidation complex alpha s	3e-20
d1pjha_	266	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	8e-19
d1ef8a_	261	c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc	3e-18
d2f6qa1	245	c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-C	1e-17
d1szoa_	249	c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus	8e-15
d1wz8a1	263	c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TT	6e-12
d2fw2a1	258	c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum	1e-11
d2a7ka1	230	c.14.1.3 (A:1-230) Carbapenem biosynthes protein C	1e-09
d1sg4a1	249	c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-d	8e-09
d1uyra1	333	c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxyla	0.002

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  149 bits (378), Expect = 7e-45
 Identities = 60/184 (32%), Positives = 88/184 (47%), Gaps = 5/184 (2%)

Query: 68  FTDIIYEK-AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
           F  II EK      +  I +NRP   NA     ++EL +A     +D +VG I+LTG   
Sbjct: 3   FQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEK 62

Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
                   + ++ R     Y        L     I R+ KPVIA V GYA+GGG  L M+
Sbjct: 63  AFAAGADIKEMQNRTFQDCYSG----KFLSHWDHITRIKKPVIAAVNGYALGGGCELAMM 118

Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
           CD+  A + A FGQ    +G+     G+  ++R VG   A EM       +A++A++ GL
Sbjct: 119 CDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGL 178

Query: 247 VNTV 250
           V+ +
Sbjct: 179 VSKI 182

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  110 bits (275), Expect = 2e-29
 Identities = 94/219 (42%), Positives = 123/219 (56%), Gaps = 19/219 (8%)

Query: 51  PSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDA 110
           P     WR+   +   + TDI Y + V +   ++  NRP+ RNAFRPHTV EL R  + A
Sbjct: 2   PFDAKAWRLV--DGFDDLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHA 59

Query: 111 RDDSSVGVIILTGKGTEAFC----------------SGGDQALRTRDGYADYENFGRLNV 154
           R    VGV++LTG G                     SG   A        D    GRL++
Sbjct: 60  RMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHI 119

Query: 155 LDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYG 213
           L++Q  IR +PK VI +V G+A GGGH LH+VCDLT+A+ + A F QT   VGSFD GYG
Sbjct: 120 LEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYG 179

Query: 214 SSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           S+ ++R VG K ARE++FL R YTAE+  +MG VN V  
Sbjct: 180 SAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAE 218

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

 Score =  107 bits (267), Expect = 1e-28
 Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 2/167 (1%)

Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQAL-R 138
            +A + +N P+RRN   P     L++A +D   D  V  ++LTG+G           L R
Sbjct: 8   HVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLER 67

Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
             +  A+      L+++ L  ++   PKP +A V G AV GG  L + CDL +  + A  
Sbjct: 68  VTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARL 127

Query: 199 GQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMG 245
           G T  K+G       S I+ R VG K A+++    R   A EA+ +G
Sbjct: 128 GYTEVKIGFVA-ALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALG 173

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 96.0 bits (237), Expect = 5e-24
 Identities = 46/195 (23%), Positives = 74/195 (37%), Gaps = 11/195 (5%)

Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           +  I       + +  + +NRP++RNA      +EL+  F     DS    ++++G G  
Sbjct: 2   YESIQVTS-AQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKM 60

Query: 128 AFCSGGDQALRTRDG---------YADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVG 178
                    + +             A Y              I + PKPVIA + G  +G
Sbjct: 61  FTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIG 120

Query: 179 GGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE-MWFLARFYT 237
           GG  L   CD+     +A F      VG          + +++G +     + F AR   
Sbjct: 121 GGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMM 180

Query: 238 AEEAEKMGLVNTVVP 252
           A+EA   GLV+ V P
Sbjct: 181 ADEALDSGLVSRVFP 195

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

 Score = 91.8 bits (226), Expect = 1e-22
 Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 5/205 (2%)

Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           +  I +   V +G+A+ITI  P  RNA     ++E+  A N A +D SVG +++TG    
Sbjct: 2   YEAIGHR--VEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDA 59

Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQ---VQIRRLPKPVIAMVAGYAVGGGHVLH 184
                  + +    G A   +  R+  L       +I R+ +PV+A + G A GGG  + 
Sbjct: 60  FCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGIS 119

Query: 185 MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKM 244
           +  D+ I AD+A F      +G  +    S  ++R+VG ++A E+    R    EEA+  
Sbjct: 120 LASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDW 179

Query: 245 GLVNTVVPVSLFVAYLMSLTKCQAH 269
           GLV+ V P   F      + +  A 
Sbjct: 180 GLVSRVYPKDEFREVAWKVARELAA 204

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (211), Expect = 2e-20
 Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 1/174 (0%)

Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
            GI  + INR   +N+   + +K L +A +  + D  V  II+  +    FC+G D   R
Sbjct: 14  RGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKER 73

Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
            +   ++   F    +  +   I  LP P IA + G A+GGG  L + CD+ +AA +A  
Sbjct: 74  AKMSSSEVGPFVS-KIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKM 132

Query: 199 GQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
           G    K+     G G+  + R +G   A+E+ F AR    +EA+ +GL++ V+ 
Sbjct: 133 GLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLE 186

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 85.9 bits (211), Expect = 3e-20
 Identities = 45/195 (23%), Positives = 78/195 (40%), Gaps = 2/195 (1%)

Query: 77  VGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQ 135
           +  GI ++  + + +  N F   T+ EL +A +  + D+SV  +I++             
Sbjct: 13  LESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADIT 72

Query: 136 A-LRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD 194
             +            G L    +      L  P +A + G A+GGG  + +  D  + AD
Sbjct: 73  EFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMAD 132

Query: 195 NAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVS 254
           +A  G    K+G +    G+  + RL+G   A E     +   AE+A K+  V+ VV   
Sbjct: 133 SAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTAD 192

Query: 255 LFVAYLMSLTKCQAH 269
              A  + L K    
Sbjct: 193 KLGAAALDLIKRAIS 207

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.3 bits (199), Expect = 8e-19
 Identities = 24/197 (12%), Positives = 54/197 (27%), Gaps = 12/197 (6%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
           +   I Y          I +  PD  NA        L      A  +  V   I+   G 
Sbjct: 3   QNEKISYRIE--GPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGR 60

Query: 127 EAFCSGGDQALRTRDGYADYENFGRL---------NVLDLQVQIRRLPKPVIAMVAGYAV 177
                   + +    G    +                + +     +  K +I  + G A+
Sbjct: 61  FFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAI 120

Query: 178 GGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWF-LARFY 236
           G    L  +CD+  + ++ ++              G+++   L              + +
Sbjct: 121 GLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPF 180

Query: 237 TAEEAEKMGLVNTVVPV 253
             +   + G ++    +
Sbjct: 181 KYDIMCENGFISKNFNM 197

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 79.9 bits (195), Expect = 3e-18
 Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 4/184 (2%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
            +  +         +A I  N   + NA     + +L++A +D        +I+    G+
Sbjct: 2   SYQYVNVVTI--NKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPEIRCIILRAPSGS 59

Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
           + F +G D       G         L    +   I++ PKP+I+MV G   GG   + M 
Sbjct: 60  KVFSAGHDIHELPSGGRDPLSYDDPLR--QITRMIQKFPKPIISMVEGSVWGGAFEMIMS 117

Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
            DL IAA  + F  T   +G      G   ++R  G    +E+ F A   TA+ A  +G+
Sbjct: 118 SDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGI 177

Query: 247 VNTV 250
           +N V
Sbjct: 178 LNHV 181

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (190), Expect = 1e-17
 Identities = 57/200 (28%), Positives = 83/200 (41%), Gaps = 5/200 (2%)

Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           F  ++      +GI KI  NRP ++NA       E++RA   A  D S+ + +LTG G  
Sbjct: 2   FETLVVTSE--DGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDY 58

Query: 128 AFCSG--GDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
                   +       G  +      + + +        PKP+IA+V G AVG    L  
Sbjct: 59  YSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLG 118

Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMG 245
           + D   A+D A F      +G    G  S    +++ P KA EM    +  TA EA   G
Sbjct: 119 LFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQG 178

Query: 246 LVNTVVPVSLFVAYLMSLTK 265
           LV  V P S F   + +  K
Sbjct: 179 LVTEVFPDSTFQKEVWTRLK 198

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 70.1 bits (170), Expect = 8e-15
 Identities = 36/204 (17%), Positives = 62/204 (30%), Gaps = 4/204 (1%)

Query: 62  DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
            E   ++ +I  E+    G+  +T++   +   +      EL   F+D   D    V+IL
Sbjct: 6   QEYSQKYENIRLERD--GGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVIL 63

Query: 122 TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
           TG G          +     G     +        L   +  +  PVIA V G       
Sbjct: 64  TGTGPSFCNEIDFTS--FNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTNAPE 121

Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEA 241
           +  M   +  A             G         +   ++G  + R      +   A  A
Sbjct: 122 IPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTA 181

Query: 242 EKMGLVNTVVPVSLFVAYLMSLTK 265
              G VN V+     +     L +
Sbjct: 182 LDYGAVNEVLSEQELLPRAWELAR 205

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Length = 263

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

 Score = 62.2 bits (149), Expect = 6e-12
 Identities = 41/179 (22%), Positives = 68/179 (37%), Gaps = 2/179 (1%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
            +  + +      G+ +IT  R ++ NA  P   + L R + D      V  ++L G+G 
Sbjct: 7   RYPGLAFAW-PRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGG 64

Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
                G    +       +          DL +     P+PV+A V   AVG G  L + 
Sbjct: 65  VFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALA 124

Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMG 245
            D+ +            ++G     +   +   LVG  KA+    L    T EEAE++G
Sbjct: 125 ADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLG 183

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (146), Expect = 1e-11
 Identities = 52/204 (25%), Positives = 80/204 (39%), Gaps = 4/204 (1%)

Query: 68  FTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDA-RDDSSVGVIILTGKG 125
           + DI+ +K   +G  +I ++ R   +NA     +KE++ A N A  DDS + +    G  
Sbjct: 1   YRDIVVKKE--DGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDSKLVLFSAAGSV 58

Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
                  G      R+            + +      +  KP++  V G A+G G  +  
Sbjct: 59  FCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILP 118

Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMG 245
           +CDL  A + A F       G    G  S    +++G   A EM    R  TA EA   G
Sbjct: 119 LCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKG 178

Query: 246 LVNTVVPVSLFVAYLMSLTKCQAH 269
           LV+ V     F   +M   K  A 
Sbjct: 179 LVSQVFLTGTFTQEVMIQIKELAS 202

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Length = 230

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

 Score = 54.8 bits (130), Expect = 1e-09
 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSV 116
           +++E+   + +  IT++ P++ N F       +  A   A  D SV
Sbjct: 1   MVFEE-NSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSV 45

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 8e-09
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           ++ E   G G+A +    P   N+     + EL+ +     +D S   +ILT      F 
Sbjct: 4   VLVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFS 62

Query: 131 SG 132
           +G
Sbjct: 63  AG 64

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 333

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 9/39 (23%), Positives = 13/39 (33%)

Query: 167 PVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV 205
             I +V   +VG G  L  +    I  +      TG   
Sbjct: 242 FTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTGAPA 280

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	100.0
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	100.0
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	100.0
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	100.0
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	100.0
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	100.0
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	100.0
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	98.45
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	98.43
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	98.24
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	98.12
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	98.07
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	97.71
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	97.62
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	97.6
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	97.59
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	97.56
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	97.36
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	97.29
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	96.98
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	96.47
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	96.29
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	96.02
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	94.31
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	94.0
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	88.18

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=100.00  E-value=4e-48  Score=333.28  Aligned_cols=195  Identities=24%  Similarity=0.300  Sum_probs=174.6

Q ss_pred             EEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhh
Q 024304           73 YEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRL  152 (269)
Q Consensus        73 ~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~  152 (269)
                      ++.. +++|++||||||+++|+||.+|+.+|.+++++++.|+++++|||+|.|+++||+|.|++++..............
T Consensus         3 ~~~~-~d~I~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~   81 (230)
T d2a7ka1           3 FEEN-SDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWID   81 (230)
T ss_dssp             EEEE-ETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHH
T ss_pred             EEEe-cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccccccccccchh
Confidence            3443 889999999999999999999999999999999999999999999988889999999999865432222222223


Q ss_pred             hHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHc
Q 024304          153 NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFL  232 (269)
Q Consensus       153 ~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~lt  232 (269)
                      .+.+++..+.++|||+||+|+|+|+|||++|+++||+||++++++|++||.++|++|++| +.+|++++|.+++++++++
T Consensus        82 ~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g-~~~l~~~iG~~~a~~l~l~  160 (230)
T d2a7ka1          82 RVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVG-AAILGFTHGFSTMQEIIYQ  160 (230)
T ss_dssp             HHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHH-HHHHHHHHCHHHHHHHHHH
T ss_pred             hhhhhhhcccchhcceeeecccccccccccchhccchhhccccchhhhcccccccccccc-ccccccccccccccccccc
Confidence            466788899999999999999999999999999999999999999999999999988765 5689999999999999999


Q ss_pred             CCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          233 ARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       233 g~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      |+.++|+||+++||||+|+|++++++++.+++++++.
T Consensus       161 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~  197 (230)
T d2a7ka1         161 CQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMAS  197 (230)
T ss_dssp             CCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHT
T ss_pred             cccchHHHHHHhhhcccCCChHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999863

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-47  Score=332.00  Aligned_cols=198  Identities=31%  Similarity=0.436  Sum_probs=176.9

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchh
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~  147 (269)
                      |++|.+++  +++|++|+||||+++|+||.+|+.+|.++++.+++|+.+ +||++|.| ++||+|+|++++.........
T Consensus         2 ~~~i~~~~--~~gi~~Itlnrp~~~Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~   77 (245)
T d2f6qa1           2 FETLVVTS--EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNG-DYYSSGNDLTNFTDIPPGGVE   77 (245)
T ss_dssp             CSSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEEST-TCSBCCBCC----CCCTTHHH
T ss_pred             cceEEEEE--ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCce-EEeecCCC-ccccCCccchhhhcccccccc
Confidence            78899999  999999999999999999999999999999999999887 89999988 699999999998654332222


Q ss_pred             hhhh---hhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHH
Q 024304          148 NFGR---LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK  224 (269)
Q Consensus       148 ~~~~---~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~  224 (269)
                      ....   ....++...+.++|||+||+|+|+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..
T Consensus        78 ~~~~~~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~  157 (245)
T d2f6qa1          78 EKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPA  157 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHH
T ss_pred             cccchhhhHHHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccc
Confidence            2211   1245678899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          225 KAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       225 ~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      ++++++++|+.++|+||+++||||+|+|++++++++.++|++++.
T Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~  202 (245)
T d2f6qa1         158 KATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAK  202 (245)
T ss_dssp             HHHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTT
T ss_pred             hhhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999863

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.8e-48  Score=336.68  Aligned_cols=198  Identities=33%  Similarity=0.495  Sum_probs=178.0

Q ss_pred             CcceEEEEEEe-cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc
Q 024304           67 EFTDIIYEKAV-GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (269)
Q Consensus        67 ~~~~v~~~~~~-~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~  145 (269)
                      +|+.|++++.. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.....  
T Consensus         2 ~~~~i~~e~~g~~~~I~~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~--   78 (260)
T d1mj3a_           2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGE-KAFAAGADIKEMQNRTF--   78 (260)
T ss_dssp             CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCS-SEEECCBCHHHHTTCCH--
T ss_pred             CCeEEEEEEEcCCCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccc-ccccccchhhhhhccch--
Confidence            57899999831 258999999999999999999999999999999999999999999988 69999999998754321  


Q ss_pred             hhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHH
Q 024304          146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK  225 (269)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~  225 (269)
                       .......+..++..+.++|||+||+|+|+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|.++
T Consensus        79 -~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~~~  157 (260)
T d1mj3a_          79 -QDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSL  157 (260)
T ss_dssp             -HHHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHH
T ss_pred             -hhhhHHHHHHHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhCHHH
Confidence             1111122345567889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          226 AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      +++|+++|++++++||+++|||++|++.+++.+.+.++++.++
T Consensus       158 a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~i~  200 (260)
T d1mj3a_         158 AMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIA  200 (260)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHcCcccCchhhccCCCceeeeccccccccccccccccc
Confidence            9999999999999999999999999999999999999998875

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=1.6e-46  Score=336.64  Aligned_cols=199  Identities=24%  Similarity=0.308  Sum_probs=180.1

Q ss_pred             cceEEEEEEecCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304           68 FTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~ln-rp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~  146 (269)
                      ++.+.+++. ++||++|+|| +|++.|+||.+|+.+|.++++.++.|+++++|||+|.| +.||+|+|++++........
T Consensus         5 ~~~i~~~~~-~~gva~i~ln~~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~   82 (310)
T d1wdka4           5 GKAITVTAL-ESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGK-DVFIVGADITEFVENFKLPD   82 (310)
T ss_dssp             CSSEEEEEC-GGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SSSBBCCCHHHHHHHTTSCH
T ss_pred             CceEEEEEe-cCCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccchhhhhhhhhcccccc
Confidence            467888774 7899999998 89999999999999999999999999999999999988 69999999998754332222


Q ss_pred             hhhh--hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHH
Q 024304          147 ENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK  224 (269)
Q Consensus       147 ~~~~--~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~  224 (269)
                      ....  ...+..++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~iG~~  162 (310)
T d1wdka4          83 AELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVD  162 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred             hhhhhhhhHHHHHHHHhhcCCccceeeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhhhhh
Confidence            2221  22356788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          225 KAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       225 ~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++++|+++|+.++++||+++||||+|+|+|+|.+.+.+++++++
T Consensus       163 ~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~  206 (310)
T d1wdka4         163 NAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAI  206 (310)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHH
T ss_pred             hhhhhhccccccCHHHHhhccCccEEccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999875

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=100.00  E-value=1.5e-46  Score=330.42  Aligned_cols=198  Identities=31%  Similarity=0.435  Sum_probs=180.1

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch-
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY-  146 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~-  146 (269)
                      |+.|.++.  ++||++|+||||+++|+||.+|+.+|.++++.+++|+++++|||+|.| +.||+|+|++++........ 
T Consensus         2 y~~i~~~i--~dgVa~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g-~~F~aG~Dl~~~~~~~~~~~~   78 (269)
T d1nzya_           2 YEAIGHRV--EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAE-DAFCAGFYLREIPLDKGVAGV   78 (269)
T ss_dssp             CSSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCGGGSCSSSHHHHH
T ss_pred             CCceEEEE--ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCc-ccccchhhHHHHhhcccccch
Confidence            57789998  999999999999999999999999999999999999999999999998 69999999998754322111 


Q ss_pred             -hhh--hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCH
Q 024304          147 -ENF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP  223 (269)
Q Consensus       147 -~~~--~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~  223 (269)
                       ...  ....+.++...+.++|||+||+|+|+|+|||++|+++||+||+++++.|++||.++|++|+++++.++++++|.
T Consensus        79 ~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~  158 (269)
T d1nzya_          79 RDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGM  158 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccCh
Confidence             111  11224577889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          224 KKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       224 ~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      .++++++++|+.++|+||+++||||+|+|++++.+.+.++|++|+
T Consensus       159 ~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la  203 (269)
T d1nzya_         159 RRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELA  203 (269)
T ss_dssp             HHHHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccccccchhHHHHcCCccccccccccccchhhhhhhhh
Confidence            999999999999999999999999999999999999999999886

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=2.8e-46  Score=325.28  Aligned_cols=198  Identities=21%  Similarity=0.337  Sum_probs=177.3

Q ss_pred             ceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhh
Q 024304           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (269)
Q Consensus        69 ~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~  148 (269)
                      ++|.++...++||++|+||||+ .|+||.+|+.+|.++++.+++|+++++|||+|.|+++||+|+|++++..........
T Consensus         2 ~~ilve~~~~~gIa~itln~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~~~~~~~   80 (249)
T d1sg4a1           2 QRVLVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAG   80 (249)
T ss_dssp             CSEEEEEETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHH
T ss_pred             CcEEEEEECCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEecccccccccccccccccc
Confidence            4566666447889999999997 599999999999999999999999999999999877899999999875433221121


Q ss_pred             hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceE--ecCCCCcccCCCChHHHHHHhhhCHHHH
Q 024304          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF--GQTGPKVGSFDAGYGSSIMSRLVGPKKA  226 (269)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f--~~~~~~~Gl~p~~g~~~~l~r~~G~~~a  226 (269)
                       ....+.+++..+.++|||+||+|+|+|+|||++|+++||+||++++++|  ++||.++|++|+++++++|++++|...+
T Consensus        81 -~~~~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~~~a  159 (249)
T d1sg4a1          81 -YWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAA  159 (249)
T ss_dssp             -HHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHH
T ss_pred             -cchhhHHHHHhhhcCccccchhhcccccccccccccccccceeeccccccccccccccccccccccccccccccccccc
Confidence             2234567888999999999999999999999999999999999999976  6899999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          227 REMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       227 ~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++++++|++++++||+++||||+|+|++++++.+.+++++++
T Consensus       160 ~~lll~g~~~~a~~A~~~Glv~~v~~~~~l~~~a~~~a~~l~  201 (249)
T d1sg4a1         160 ERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWM  201 (249)
T ss_dssp             HHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHH
T ss_pred             cccccccccccHHHHHhhccccccCChHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999886

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-46  Score=327.60  Aligned_cols=197  Identities=27%  Similarity=0.414  Sum_probs=177.6

Q ss_pred             cceEEEEEEecCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304           68 FTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~ln-rp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~  146 (269)
                      |++|.+++  ++||++|+|| ||+++|+||.+|+.+|.++++.++.|+ +++|||+|.| ++||+|+|+.++........
T Consensus         1 y~~i~v~~--~~gi~~i~l~~rp~~~Nals~~~~~el~~al~~~~~d~-~~~vvl~g~g-~~FsaG~Dl~~~~~~~~~~~   76 (258)
T d2fw2a1           1 YRDIVVKK--EDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADD-SKLVLFSAAG-SVFCCGLDFGYFVRHLRNDR   76 (258)
T ss_dssp             CCSEEEEE--ETTEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSS-CSEEEEEECS-SCSBCCBCHHHHHHHHHHCH
T ss_pred             CceEEEEE--ECCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHcCC-CEEEEEecCc-cccccccccchhhhcccccc
Confidence            67899999  9999999997 799999999999999999999999875 6999999998 69999999998753211111


Q ss_pred             hh---hhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCH
Q 024304          147 EN---FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP  223 (269)
Q Consensus       147 ~~---~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~  223 (269)
                      ..   .....+.+++..+.++|||+||+|+|+|+|||++|+++||+||++++++|++||.++|++|++++++++++++|.
T Consensus        77 ~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~  156 (258)
T d2fw2a1          77 NTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGK  156 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCH
T ss_pred             cchhhHHHHHHHHHHHhhhccceeeeeecccccccccccccccccccceecccceeeccccccccccccccccchhhcCc
Confidence            11   112235677889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          224 KKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       224 ~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      .++++|+++|++++|+||+++||||+|+|++++.+++.+++++|+
T Consensus       157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~  201 (258)
T d2fw2a1         157 ASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELA  201 (258)
T ss_dssp             HHHHHHHTTCCEEEHHHHHHTTSCSEEECSTTHHHHHHHHHHHHT
T ss_pred             cccchhhccCcccccccccccccccccccccccccccchhhhhhh
Confidence            999999999999999999999999999999999999999999986

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-46  Score=330.01  Aligned_cols=198  Identities=25%  Similarity=0.339  Sum_probs=177.6

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcC-CCCceeccccccccccCCccc
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK-GTEAFCSGGDQALRTRDGYAD  145 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~-g~~~Fc~G~Dl~~~~~~~~~~  145 (269)
                      +|++|.++.  +++|++|+||||+++|+||.+|+.+|.++++++++ +++++|||+|. |+++||+|+|++++.......
T Consensus         2 ~~~~i~~~~--~~~v~~Itlnrp~~~Nal~~~~~~~l~~al~~~~~-~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~   78 (261)
T d1ef8a_           2 SYQYVNVVT--INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNR-PEIRCIILRAPSGSKVFSAGHDIHELPSGGRDP   78 (261)
T ss_dssp             CCSSEEEEE--ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCS-TTCCEEEEECCTTCSEEECCSCSTTC-----CT
T ss_pred             CCCEEEEEE--ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeccccchhhcccccccccccCCccc
Confidence            467899999  99999999999999999999999999999999984 57999999985 458999999999876533221


Q ss_pred             hhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHH
Q 024304          146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK  225 (269)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~  225 (269)
                      . . ....+.+++..+.++|||+||+|+|+|+|||++|+++||+||++++++|++||.++|++|++++++++++++|..+
T Consensus        79 ~-~-~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~~  156 (261)
T d1ef8a_          79 L-S-YDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHI  156 (261)
T ss_dssp             T-C-TTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHH
T ss_pred             c-c-cccchhhhHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCccc
Confidence            1 1 1223668889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          226 AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      +++++++|+.++++||+++||||+|+|.+++.+.+.+++++++.
T Consensus       157 a~~~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~  200 (261)
T d1ef8a_         157 VKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISE  200 (261)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTT
T ss_pred             cccccccCceEcHHHHHHcCCcceeeechhhhhhhHHHHHHHHh
Confidence            99999999999999999999999999999999999999999863

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.2e-46  Score=330.12  Aligned_cols=200  Identities=24%  Similarity=0.333  Sum_probs=180.0

Q ss_pred             CcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccch
Q 024304           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (269)
Q Consensus        67 ~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~  146 (269)
                      .|+.+.++.. ++||++|+| ||+++|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++.......+
T Consensus         7 ~~~~i~~~~~-~~gV~~itl-rp~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g-~~FsaG~Dl~~~~~~~~~~~   83 (263)
T d1wz8a1           7 RYPGLAFAWP-RPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEG-GVFSAGGSFGLIEEMRASHE   83 (263)
T ss_dssp             HCTTEEEEEE-ETTEEEEEE-CCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGG-GCCBCCBCHHHHHHHHHCHH
T ss_pred             CCCeEEEEEc-CCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHhhCCCCeEEEEeccc-ccccccchhhhhhhhccccc
Confidence            4677888875 778999999 89999999999999999999999999999999999998 79999999998754211111


Q ss_pred             h-hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHH
Q 024304          147 E-NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK  225 (269)
Q Consensus       147 ~-~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~  225 (269)
                      . ........+++..+.++|||+||+|+|+|+|||++|+++||+||++++++|++||.++|++|++++++++++++|..+
T Consensus        84 ~~~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~~  163 (263)
T d1wz8a1          84 ALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAK  163 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHH
T ss_pred             ccccchhhhhHHHHHhhhhhcceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence            1 111223567888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          226 AREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       226 a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      +++|+++|++++|+||+++||||+|+|.+++.+++.++|++|+.
T Consensus       164 a~~l~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~  207 (263)
T d1wz8a1         164 AKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQ  207 (263)
T ss_dssp             HHHHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHT
T ss_pred             hhhhcccccccchhHHHhcCCcccccchhhhhHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999873

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=6.1e-46  Score=330.80  Aligned_cols=214  Identities=47%  Similarity=0.778  Sum_probs=178.8

Q ss_pred             cchhhhhccCCCCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCC------CC
Q 024304           54 DVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG------TE  127 (269)
Q Consensus        54 ~~~~~~~~~~~~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g------~~  127 (269)
                      ...|+....  .+++.+|.|++++++||++||||||+++|+||.+|+.+|.++++++++|+++++|||+|.+      ++
T Consensus         5 ~~~~~~~~~--~~~~~~i~~~~~~~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~   82 (297)
T d1q52a_           5 AKAWRLVDG--FDDLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGW   82 (297)
T ss_dssp             GGGEEECTT--CTTCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCC
T ss_pred             HHHCcccCC--cCCCcceEEEEEccCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhh
Confidence            445775443  7788999999866799999999999999999999999999999999999999999999984      35


Q ss_pred             ceeccccccccccCCccchh----------hhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCc-
Q 024304          128 AFCSGGDQALRTRDGYADYE----------NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA-  196 (269)
Q Consensus       128 ~Fc~G~Dl~~~~~~~~~~~~----------~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a-  196 (269)
                      .||+|.|+............          ......+.++...|.++||||||+|||+|+|||++|+++||+||+++++ 
T Consensus        83 ~f~ag~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~  162 (297)
T d1q52a_          83 AFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYA  162 (297)
T ss_dssp             EEECCC-----------------------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTC
T ss_pred             hhhhcchhhhhcccccccccccccchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccc
Confidence            77888888765432211110          0111235678889999999999999999999999999999999998765 


Q ss_pred             eEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          197 IFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       197 ~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      .|++||.++|++|+++++.+|+|++|.+++++++++|+.++|+||+++||||+|+|++++++.+.+++++++.
T Consensus       163 ~f~~pe~~~Gl~p~~~~~~~L~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~el~~~~~~~a~~l~~  235 (297)
T d1q52a_         163 RFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINA  235 (297)
T ss_dssp             EEECCGGGGTCCCCSTTTHHHHHHHCHHHHHHHHHHCCEECHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHT
T ss_pred             cceeeeeccccccccccccccccccCccceeeccccccccchHhhhhhccccccCchHHhhHHHHHHhhhhcc
Confidence            7999999999999999999999999999999999999999999999999999999999999999999998863

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-46  Score=327.19  Aligned_cols=188  Identities=16%  Similarity=0.177  Sum_probs=165.0

Q ss_pred             CCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc
Q 024304           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (269)
Q Consensus        66 ~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~  145 (269)
                      .+++.|.++.  +++|++|+||||+++|+||.+|+.+|.++++++++|+++++|||+|.| ++||+|+|++++.......
T Consensus         2 ~~~e~i~~~~--~~~v~~Itlnrp~~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g-~~FsaG~Dl~~~~~~~~~~   78 (266)
T d1pjha_           2 RQNEKISYRI--EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSG-RFFSSGADFKGIAKAQGDD   78 (266)
T ss_dssp             CCBTTEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TBSBCCBCHHHHHC-----
T ss_pred             CCCCeEEEEE--ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccc-cccccchhHHHHHhccccc
Confidence            3567899999  999999999999999999999999999999999999999999999998 6999999999875432211


Q ss_pred             hh-------hh-h--hhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEe-CCceEecCCCCcccCCCChHH
Q 024304          146 YE-------NF-G--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGS  214 (269)
Q Consensus       146 ~~-------~~-~--~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~-~~a~f~~~~~~~Gl~p~~g~~  214 (269)
                      ..       .. .  ......+...+.++|||+||+|+|+|+|||++|+++||+|||+ ++++|++||+++|++|++|++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~  158 (266)
T d1pjha_          79 TNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTT  158 (266)
T ss_dssp             --CCSSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHH
T ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhccccccccccccccccccccc
Confidence            10       00 0  1124567788999999999999999999999999999999997 557899999999999999999


Q ss_pred             HHHHhhhCHHHHHHHHHcCCCCCHHHHHHcCccceecCCCcH
Q 024304          215 SIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLF  256 (269)
Q Consensus       215 ~~l~r~~G~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l  256 (269)
                      ++++|++|.+++++|+++|+.++++||+++||||+|++.+++
T Consensus       159 ~~l~r~~g~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~~  200 (266)
T d1pjha_         159 VSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSS  200 (266)
T ss_dssp             HHHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTT
T ss_pred             cccccccccchhhhhhccCCcCCHHHHHHCCCEeEeeCchhh
Confidence            999999999999999999999999999999999999986543

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=7.5e-46  Score=322.56  Aligned_cols=201  Identities=21%  Similarity=0.302  Sum_probs=181.1

Q ss_pred             CCCCcceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCc
Q 024304           64 SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY  143 (269)
Q Consensus        64 ~~~~~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~  143 (269)
                      +..+|++|.+++  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++.....
T Consensus         8 ~~~~y~~i~~~~--~~~v~~itln~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g-~~FsaG~Dl~~~~~~~~   84 (249)
T d1szoa_           8 YSQKYENIRLER--DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTG-PSFCNEIDFTSFNLGTP   84 (249)
T ss_dssp             HTTSCTTEEEEE--ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TBSBCEECGGGSCCSSH
T ss_pred             HhCCCCeEEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcceEeeeccc-ccccccchhhhhhcccc
Confidence            356899999999  999999999999999999999999999999999999999999999999 69999999998754332


Q ss_pred             cchhhhhhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEe-cCCCCcccCCCChHHHHHHhhhC
Q 024304          144 ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG-QTGPKVGSFDAGYGSSIMSRLVG  222 (269)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~-~~~~~~Gl~p~~g~~~~l~r~~G  222 (269)
                      ...... ...+..++..+.++|||+|++++|.|. ||++|+++||+||++++++|. +||.++|++|+++++++++|++|
T Consensus        85 ~~~~~~-~~~~~~l~~~i~~~~~pvIa~v~g~~~-GG~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig  162 (249)
T d1szoa_          85 HDWDEI-IFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLG  162 (249)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHC
T ss_pred             cchhhh-hhhhhhhhhhcccCcccceeeeccccc-cccccccccccccccCCcEEEEeeccccccccccccccccccccC
Confidence            222221 223567888999999999999999885 577999999999999999995 69999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHHHhhcC
Q 024304          223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQAH  269 (269)
Q Consensus       223 ~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la~  269 (269)
                      ..++++|+++|+.++++||+++||||+|+|++++.+++.++|++++.
T Consensus       163 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~  209 (249)
T d1szoa_         163 SNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAE  209 (249)
T ss_dssp             HHHHHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHT
T ss_pred             ccceeeecccCCCCCHHHHHHhCCcCcccCHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999998863

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-46  Score=326.82  Aligned_cols=190  Identities=27%  Similarity=0.426  Sum_probs=169.6

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHH
Q 024304           78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL  157 (269)
Q Consensus        78 ~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l  157 (269)
                      ++||++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|.|++.+....... .......+.++
T Consensus        13 ~~gI~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~~-~~~~~~~~~~~   91 (266)
T d1hzda_          13 NRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSE-VGPFVSKIRAV   91 (266)
T ss_dssp             GTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHH-HHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccchh-hhhhhhHHHHH
Confidence            57899999999999999999999999999999999999999999999988999999999876443221 11222346678


Q ss_pred             HHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCC
Q 024304          158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT  237 (269)
Q Consensus       158 ~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~  237 (269)
                      +..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|++|++++|++++|..++++|+++|+.++
T Consensus        92 ~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~  171 (266)
T d1hzda_          92 INDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLD  171 (266)
T ss_dssp             HHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTCEEE
T ss_pred             HHHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHHHHHhhhccCCccC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCccceecCCCcHH----HHHHHHHHhhc
Q 024304          238 AEEAEKMGLVNTVVPVSLFV----AYLMSLTKCQA  268 (269)
Q Consensus       238 a~eA~~~GLv~~vv~~e~l~----~~a~~la~~la  268 (269)
                      |+||+++||||+|||++++.    +.+.+++++++
T Consensus       172 a~eA~~~Glv~~vv~~~~l~~~~~~~a~~~a~~i~  206 (266)
T d1hzda_         172 GKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFL  206 (266)
T ss_dssp             HHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTT
T ss_pred             HHHhhcccccccccChhhhhhHHHHHHHHHHHhcc
Confidence            99999999999999987754    55555556554

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=5.2e-45  Score=317.10  Aligned_cols=189  Identities=33%  Similarity=0.512  Sum_probs=169.6

Q ss_pred             cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhh--hhhHH
Q 024304           78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG--RLNVL  155 (269)
Q Consensus        78 ~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~--~~~~~  155 (269)
                      +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| +.||+|+|+..+............  .....
T Consensus         6 ~G~va~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g-~~f~aG~dl~~~~~~~~~~~~~~~~~~~~~~   84 (253)
T d1uiya_           6 KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRG-KAFSAGADLAFLERVTELGAEENYRHSLSLM   84 (253)
T ss_dssp             CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             eCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccc-ccccccchhHHhhhccccCcccccchhhhhh
Confidence            567999999999999999999999999999999999999999999999 699999999886543322222211  22345


Q ss_pred             HHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCC
Q 024304          156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF  235 (269)
Q Consensus       156 ~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~  235 (269)
                      .+...+.++|||+||+|+|+|+|||++|+++||+||++++++|++||.++|++|. +++.+|++++|..++++|+++|++
T Consensus        85 ~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~~-~~~~~l~~~~g~~~a~~l~l~g~~  163 (253)
T d1uiya_          85 RLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLLLTGRL  163 (253)
T ss_dssp             HHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCH-HHHHHHHHHSCHHHHHHHHHHCCE
T ss_pred             hhhhHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhcccccccc-cchhhhhcccCHHHHHHHhhcCcC
Confidence            6778899999999999999999999999999999999999999999999998774 678899999999999999999999


Q ss_pred             CCHHHHHHcCccceecCCCcHHHHHHHHHHhhc
Q 024304          236 YTAEEAEKMGLVNTVVPVSLFVAYLMSLTKCQA  268 (269)
Q Consensus       236 i~a~eA~~~GLv~~vv~~e~l~~~a~~la~~la  268 (269)
                      ++++||+++||||+|+|.+++.+.+.++++.++
T Consensus       164 ~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~~~  196 (253)
T d1uiya_         164 VEAREAKALGLVNRIAPPGKALEEAKALAEEVA  196 (253)
T ss_dssp             EEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHhCCCcccccccccchhHHHHHHhhc
Confidence            999999999999999999999999999998875

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.5e-44  Score=318.14  Aligned_cols=199  Identities=26%  Similarity=0.376  Sum_probs=172.2

Q ss_pred             cceEEEEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccc--
Q 024304           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD--  145 (269)
Q Consensus        68 ~~~v~~~~~~~~gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~--  145 (269)
                      |+++.++.. +++|++||||||+++|+||.+|+.+|.++|+.+++|+++++|||+|.| +.||+|+|+..+.......  
T Consensus         2 y~~l~~~~~-~~~I~~itlnrP~~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~-~~F~aG~dl~~~~~~~~~~~~   79 (275)
T d1dcia_           2 YESIQVTSA-QKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAG-KMFTSGIDLMDMASDILQPPG   79 (275)
T ss_dssp             CSSEEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEEST-TCSBCCBCHHHHHHHHTSCCC
T ss_pred             CceEEEEEc-cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccc-cccccCccHHHhhhccccccc
Confidence            677888664 789999999999999999999999999999999999999999999988 6999999998764321110  


Q ss_pred             --hhh---h---hhhhHHHHHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHH
Q 024304          146 --YEN---F---GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIM  217 (269)
Q Consensus       146 --~~~---~---~~~~~~~l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l  217 (269)
                        ...   .   ....+..++..+.++|||+||+|+|+|+|||++|+++|||||++++++|++||.++|++|++++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~  159 (275)
T d1dcia_          80 DDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRL  159 (275)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHG
T ss_pred             ccccchhhhhccchhhhHHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhccccccccccccccc
Confidence              000   0   01124567778999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhCH-HHHHHHHHcCCCCCHHHHHHcCccceecCCCc-HHHHHHHHHHhhc
Q 024304          218 SRLVGP-KKAREMWFLARFYTAEEAEKMGLVNTVVPVSL-FVAYLMSLTKCQA  268 (269)
Q Consensus       218 ~r~~G~-~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~-l~~~a~~la~~la  268 (269)
                      ++++|. ..+++++++|+.++++||+++||||+|+|.++ +.+.+.+++++++
T Consensus       160 ~~~~g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~~~l~~~~~~~a~~i~  212 (275)
T d1dcia_         160 PKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADIS  212 (275)
T ss_dssp             GGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccchhhhccCCCceeeeehhhhhhhcccccccccc
Confidence            999994 45679999999999999999999999998755 6778888888765

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=3e-07  Score=74.00  Aligned_cols=135  Identities=16%  Similarity=0.161  Sum_probs=91.2

Q ss_pred             CCHHHHHHHHHHHHHhhcCC---CceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEE
Q 024304           95 FRPHTVKELIRAFNDARDDS---SVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM  171 (269)
Q Consensus        95 l~~~~~~~L~~al~~~~~d~---~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~  171 (269)
                      ++.++..++...+..++.+.   .+. +.|.+.|       +|+..                ...++..|..++.|+...
T Consensus        25 I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS~G-------G~v~~----------------g~~i~d~i~~~~~~v~tv   80 (183)
T d1yg6a1          25 VEDHMANLIVAQMLFLEAENPEKDIY-LYINSPG-------GVITA----------------GMSIYDTMQFIKPDVSTI   80 (183)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEECC-------BCHHH----------------HHHHHHHHHHSSSCEEEE
T ss_pred             ECHHHHHHHHHHHHHhhhhccCCceE-EEEeCCC-------ccHHH----------------HHHHHHHHHhCCCCEEEE
Confidence            77888888888887776432   233 3344444       33222                335567888899999999


Q ss_pred             EcCcccccchhhhhccc--EEEEeCCceEecCCCCcccCCCChHHH---------------HHHhhhC--HHHHHHHHHc
Q 024304          172 VAGYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGSS---------------IMSRLVG--PKKAREMWFL  232 (269)
Q Consensus       172 v~G~a~GgG~~lal~~D--~~ia~~~a~f~~~~~~~Gl~p~~g~~~---------------~l~r~~G--~~~a~~l~lt  232 (269)
                      +.|.|.+.|.-|.+++|  .|++.+++.|-+.++..|......-..               .+.+..|  ....++++-.
T Consensus        81 ~~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~~e~i~~~~~~  160 (183)
T d1yg6a1          81 CMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTER  160 (183)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSS
T ss_pred             EEEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhcc
Confidence            99999999999999998  799999999998887655431111000               1112222  2233343333


Q ss_pred             CCCCCHHHHHHcCccceecCC
Q 024304          233 ARFYTAEEAEKMGLVNTVVPV  253 (269)
Q Consensus       233 g~~i~a~eA~~~GLv~~vv~~  253 (269)
                      -.-++|+||+++||||+|+..
T Consensus       161 d~~lta~EAl~~GliD~Ii~~  181 (183)
T d1yg6a1         161 DRFLSAPEAVEYGLVDSILTH  181 (183)
T ss_dssp             CEEEEHHHHHHHTSSSEECCC
T ss_pred             CccccHHHHHHcCCCcEEecc
Confidence            345899999999999999864

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.43  E-value=8.7e-07  Score=70.97  Aligned_cols=135  Identities=15%  Similarity=0.162  Sum_probs=89.1

Q ss_pred             CCHHHHHHHHHHHHHhhc---CCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEE
Q 024304           95 FRPHTVKELIRAFNDARD---DSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM  171 (269)
Q Consensus        95 l~~~~~~~L~~al~~~~~---d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~  171 (269)
                      ++.++..++...|..++.   ++.+.+. |.+.|       +|+..                ...++..+..++.|+...
T Consensus        22 I~~~~~~~~i~~l~~l~~~~~~~~I~l~-InS~G-------G~v~~----------------gl~i~d~i~~~~~~v~t~   77 (179)
T d2cbya1          22 VNDEIANRLCAQILLLAAEDASKDISLY-INSPG-------GSISA----------------GMAIYDTMVLAPCDIATY   77 (179)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEE-EEECC-------BCHHH----------------HHHHHHHHHHCSSCEEEE
T ss_pred             ECHHHHHHHHHHHHHHhccCCCCeEEEE-eeCCC-------CCHHH----------------HHHHHHHHHhhccceeee
Confidence            788888888887655542   2334433 44444       23222                234556777889999999


Q ss_pred             EcCcccccchhhhhccc--EEEEeCCceEecCCCCcccCCCChHHH---------------HHHhhhC--HHHHHHHHHc
Q 024304          172 VAGYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGSS---------------IMSRLVG--PKKAREMWFL  232 (269)
Q Consensus       172 v~G~a~GgG~~lal~~D--~~ia~~~a~f~~~~~~~Gl~p~~g~~~---------------~l~r~~G--~~~a~~l~lt  232 (269)
                      +.|.|.+.|.-+.+++|  .|++.++++|-+.++..|......-..               .+.+..|  ...-++++-.
T Consensus        78 ~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~i~~~~~~  157 (179)
T d2cbya1          78 AMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDR  157 (179)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHT
T ss_pred             hhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcC
Confidence            99999999999999999  899999999998877655422111000               2222233  3334455556


Q ss_pred             CCCCCHHHHHHcCccceecCC
Q 024304          233 ARFYTAEEAEKMGLVNTVVPV  253 (269)
Q Consensus       233 g~~i~a~eA~~~GLv~~vv~~  253 (269)
                      ..-++|+||+++||||+|+..
T Consensus       158 d~~l~a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         158 DRWFTAAEALEYGFVDHIITR  178 (179)
T ss_dssp             TCEEEHHHHHHHTSCSEECSC
T ss_pred             CceecHHHHHHcCCCcEEecC
Confidence            678999999999999999864

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.24  E-value=8e-06  Score=65.90  Aligned_cols=136  Identities=15%  Similarity=0.158  Sum_probs=88.9

Q ss_pred             CCCHHHHHHHHHHHHHhhc-CC--CceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEE
Q 024304           94 AFRPHTVKELIRAFNDARD-DS--SVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIA  170 (269)
Q Consensus        94 al~~~~~~~L~~al~~~~~-d~--~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia  170 (269)
                      .++.++...+...|..++. |+  .+. +.|.+.|+       |+..                ...++..+..++.|+..
T Consensus        32 ~I~~~~~~~~~~~l~~l~~~~~~~~I~-l~InS~GG-------~v~~----------------glai~d~i~~~~~~v~t   87 (192)
T d1y7oa1          32 PVEDNMANSVIAQLLFLDAQDSTKDIY-LYVNTPGG-------SVSA----------------GLAIVDTMNFIKADVQT   87 (192)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCTTSCEE-EEEEECCB-------CHHH----------------HHHHHHHHHHSSSCEEE
T ss_pred             EEchHHHHHHHHHHHHhhhhcccCcee-eeecCCCC-------CHHH----------------HHHHHHHHHhcCcceEE
Confidence            3788888888887766642 22  344 34455443       2221                23456678889999999


Q ss_pred             EEcCcccccchhhhhc--ccEEEEeCCceEecCCCCcccCCCChHHH-----------------HHHhhhC--HHHHHHH
Q 024304          171 MVAGYAVGGGHVLHMV--CDLTIAADNAIFGQTGPKVGSFDAGYGSS-----------------IMSRLVG--PKKAREM  229 (269)
Q Consensus       171 ~v~G~a~GgG~~lal~--~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~-----------------~l~r~~G--~~~a~~l  229 (269)
                      .+.|.|.+.|.-|.++  +|.|++.+++.|-+..+..|.........                 .+....|  .....+.
T Consensus        88 ~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg~~~~~i~~~  167 (192)
T d1y7oa1          88 IVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHAD  167 (192)
T ss_dssp             EEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             EeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHh
Confidence            9999999999888775  57999999999999888766543221110                 1112223  3344455


Q ss_pred             HHcCCCCCHHHHHHcCccceecCC
Q 024304          230 WFLARFYTAEEAEKMGLVNTVVPV  253 (269)
Q Consensus       230 ~ltg~~i~a~eA~~~GLv~~vv~~  253 (269)
                      +-...-++|+||+++||||+|+..
T Consensus       168 ~~rd~~lsa~EAleyGliD~Ii~~  191 (192)
T d1y7oa1         168 AERDNWMSAQETLEYGFIDEIMAN  191 (192)
T ss_dssp             HHSCCCBCHHHHHHHTSCSEECCC
T ss_pred             hcCCceecHHHHHHcCCCcEEecC
Confidence            566678999999999999999864

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=98.12  E-value=8.6e-06  Score=65.79  Aligned_cols=132  Identities=14%  Similarity=0.173  Sum_probs=89.3

Q ss_pred             CCHHHHHHHHHHHHHhhc---CCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEE
Q 024304           95 FRPHTVKELIRAFNDARD---DSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM  171 (269)
Q Consensus        95 l~~~~~~~L~~al~~~~~---d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~  171 (269)
                      ++.++...+...+..++.   +..+...| .+.|+       |+..                ...++..+..++-|+...
T Consensus        35 I~~~~~~~~i~~l~~l~~~~~~~~I~l~I-nS~GG-------~v~~----------------g~~i~d~i~~~~~~V~tv   90 (193)
T d1tg6a1          35 IDDSVASLVIAQLLFLQSESNKKPIHMYI-NSPGG-------VVTA----------------GLAIYDTMQYILNPICTW   90 (193)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCB-------CHHH----------------HHHHHHHHHHSCSCEEEE
T ss_pred             EchHHHHHHHHHHHHhcccCCCcEEEEEe-ecCcc-------cHHH----------------HHHHHHHHHhhcCceEEE
Confidence            677877777766665553   23454444 55442       2111                234566777889999999


Q ss_pred             EcCcccccchhhhhccc--EEEEeCCceEecCCCCcccCCCChHHH-----------------HHHhhhC--HHHHHHHH
Q 024304          172 VAGYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGSS-----------------IMSRLVG--PKKAREMW  230 (269)
Q Consensus       172 v~G~a~GgG~~lal~~D--~~ia~~~a~f~~~~~~~Gl~p~~g~~~-----------------~l~r~~G--~~~a~~l~  230 (269)
                      +.|.|.+.|.-|.+++|  .|++.++++|-+..+..|....  ...                 .+....|  ....++++
T Consensus        91 ~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~G~--~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~i~~~~  168 (193)
T d1tg6a1          91 CVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQ--ATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAM  168 (193)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSS--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             EccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence            99999999999999999  5999999999998887665321  121                 1122223  22333443


Q ss_pred             HcCCCCCHHHHHHcCccceecC
Q 024304          231 FLARFYTAEEAEKMGLVNTVVP  252 (269)
Q Consensus       231 ltg~~i~a~eA~~~GLv~~vv~  252 (269)
                      -.-.-++|+||+++||||+|+.
T Consensus       169 ~rD~~lta~EAl~yGliD~Ii~  190 (193)
T d1tg6a1         169 ERDRYMSPMEAQEFGILDKVLV  190 (193)
T ss_dssp             SSCEEECHHHHHHHTSCSEECS
T ss_pred             ccCccCCHHHHHHcCCCCEEcc
Confidence            3344699999999999999985

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.07  E-value=4.4e-05  Score=61.27  Aligned_cols=135  Identities=13%  Similarity=0.131  Sum_probs=90.9

Q ss_pred             CCHHHHHHHHHHHHHhhcC--CCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEE
Q 024304           95 FRPHTVKELIRAFNDARDD--SSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV  172 (269)
Q Consensus        95 l~~~~~~~L~~al~~~~~d--~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v  172 (269)
                      +|.++..++...+..+++.  +.+.+. |.+.|       +|+..                ...++..+..++.|+...+
T Consensus        27 Id~~~~~~~i~~l~~l~~~~~~~I~l~-INS~G-------G~v~~----------------g~ai~d~i~~~~~~v~tv~   82 (190)
T d2f6ia1          27 INKKTADELISQLLYLDNINHNDIKIY-INSPG-------GSINE----------------GLAILDIFNYIKSDIQTIS   82 (190)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCCSCEEEE-EEECC-------BCHHH----------------HHHHHHHHHHSSSCEEEEE
T ss_pred             eCHHHHHHHHHHHHHHhccCCCCeEEE-EeCch-------hhhhH----------------HHHHHHHHHhhCCceEEEE
Confidence            7888888888887777543  334333 34433       33322                2345667778899999999


Q ss_pred             cCcccccchhhhhccc--EEEEeCCceEecCCCCcccCCCChHH---------------HHHHhhhCHH--HHHHHHHcC
Q 024304          173 AGYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGS---------------SIMSRLVGPK--KAREMWFLA  233 (269)
Q Consensus       173 ~G~a~GgG~~lal~~D--~~ia~~~a~f~~~~~~~Gl~p~~g~~---------------~~l~r~~G~~--~a~~l~ltg  233 (269)
                      .|.|.+.|..+++++|  .|++.++++|-+.....|......-.               ..+.+..|..  ...+++-.-
T Consensus        83 ~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~~i~~~~~~d  162 (190)
T d2f6ia1          83 FGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRD  162 (190)
T ss_dssp             EEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTT
T ss_pred             eccccchhHHHHHhCCCCccccCCCcEEEEcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhccCC
Confidence            9999999999999988  69999999999888776643211100               0222333322  233344445


Q ss_pred             CCCCHHHHHHcCccceecCC
Q 024304          234 RFYTAEEAEKMGLVNTVVPV  253 (269)
Q Consensus       234 ~~i~a~eA~~~GLv~~vv~~  253 (269)
                      .-++|+||+++||||+|++.
T Consensus       163 ~~l~a~EAl~~GliD~Ii~~  182 (190)
T d2f6ia1         163 YYMNALEAKQYGIIDEVIET  182 (190)
T ss_dssp             CEECHHHHHHHTSCSEECCC
T ss_pred             eeecHHHHHHcCCCcEEccc
Confidence            56999999999999999965

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=6.9e-05  Score=63.18  Aligned_cols=157  Identities=18%  Similarity=0.243  Sum_probs=94.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHH
Q 024304           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (269)
Q Consensus        81 v~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (269)
                      |..+..+..=...+++....+.+.++.+.+.+.. +-.|.++-.|      |..+.+-.      ...............
T Consensus        98 v~v~a~Dftv~gGS~g~~~~~Ki~~a~e~A~~~~-lPlI~~~~sg------G~r~~e~~------~sl~~~~~~~~~~~~  164 (263)
T d2f9yb1          98 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDN-CPLICFSASG------GARMQEAL------MSLMQMAKTSAALAK  164 (263)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHHT-CCEEEEEEES------SBCGGGTH------HHHHHHHHHHHHHHH
T ss_pred             EEEEeeeehhhccccccchhhHHhHHHHHHHHcC-CCeEEEecCC------Cccccccc------chhhcchhHHHHHHH
Confidence            4444444444667999999999999999987654 3455554322      33332210      011111112233345


Q ss_pred             HhcCCCcEEEEEcCcccccch-hhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHH
Q 024304          161 IRRLPKPVIAMVAGYAVGGGH-VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE  239 (269)
Q Consensus       161 i~~~~kP~Ia~v~G~a~GgG~-~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~  239 (269)
                      +.....|+|+++.|+|.||+. .+++.+|++++.+.+.+++..+++           .....|..      +.-+.-+++
T Consensus       165 ~~~~~vP~I~v~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~aGP~v-----------ve~~~ge~------~~e~~g~a~  227 (263)
T d2f9yb1         165 MQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPRV-----------IEQTVREK------LPPGFQRSE  227 (263)
T ss_dssp             HHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHHH-----------HHHHHTSC------CCTTTTBHH
T ss_pred             HHhCCCceEEEecCCcchHHHhhhhhcCceEeeecceeeeccCHHH-----------HhhhcCCc------CChhhccHH
Confidence            556778999999999999986 478888999888888877633221           11111110      111222444


Q ss_pred             HHHHcCccceecCCCcHHHHHHHHHHhh
Q 024304          240 EAEKMGLVNTVVPVSLFVAYLMSLTKCQ  267 (269)
Q Consensus       240 eA~~~GLv~~vv~~e~l~~~a~~la~~l  267 (269)
                      -..+.|+||.|+++++..+...++.+-|
T Consensus       228 ~~~~~G~iD~vv~~ee~~~~l~~~l~~L  255 (263)
T d2f9yb1         228 FLIEKGAIDMIVRRPEMRLKLASILAKL  255 (263)
T ss_dssp             HHGGGTCCSEECCHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCEEECCHHHHHHHHHHHHHH
Confidence            4567899999999887666655555444

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=97.62  E-value=0.00076  Score=56.20  Aligned_cols=146  Identities=16%  Similarity=0.200  Sum_probs=90.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEE-EcCCCCceeccccccccccCCccchhhhhhhhHHHHHH
Q 024304           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQV  159 (269)
Q Consensus        81 v~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl-~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~  159 (269)
                      |..+..+..-+..+++....+.+..+.+.+.+..- -+|.+ .|.|       .-+.+    .........  ....-..
T Consensus        91 v~v~a~Dftv~GGS~g~~~~~K~~~a~e~A~~~~l-PlV~l~~sgG-------~r~~e----g~~~l~~~~--~~~~~~~  156 (253)
T d1on3a1          91 VHAASQDFTVMGGSAGETQSTKVVETMEQALLTGT-PFLFFYDSGG-------ARIQE----GIDSLSGYG--KMFFANV  156 (253)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTC-CEEEEEEECS-------BCGGG----THHHHHHHH--HHHHHHH
T ss_pred             chhhhchhhhhcccceecccchhhhhHHHHhhcCC-CeEEEEecCC-------Ccccc----cceeccccc--eehHHHH
Confidence            44445544446679999999999999999987653 34444 4433       22222    000001111  1112123


Q ss_pred             HHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCHH
Q 024304          160 QIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE  239 (269)
Q Consensus       160 ~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a~  239 (269)
                      .+. -..|+|+++.|+|.||+.....+||++|+.+++.+++..+.           .+..           .+|+.++.+
T Consensus       157 ~ls-~~vP~i~vv~Gp~~GG~a~~~~~~d~vi~~~~a~i~~aGP~-----------vVe~-----------~~ge~~~~e  213 (253)
T d1on3a1         157 KLS-GVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQ-----------VIKS-----------VTGEDVTAD  213 (253)
T ss_dssp             HHT-TTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESSCHH-----------HHHH-----------HHCCCCCHH
T ss_pred             HHh-ccceEEEEEecCcccceeeccchhhheeccccceEEecCcc-----------hhhh-----------hhCCcCChH
Confidence            333 35899999999999999999999999999998888753222           1111           345666654


Q ss_pred             HH-------HHcCccceecCCCcHH-HHHHHH
Q 024304          240 EA-------EKMGLVNTVVPVSLFV-AYLMSL  263 (269)
Q Consensus       240 eA-------~~~GLv~~vv~~e~l~-~~a~~l  263 (269)
                      |.       .+-|.+|.+++.|+.. +.++++
T Consensus       214 elGga~~h~~~sG~iD~v~~~e~~a~~~~r~l  245 (253)
T d1on3a1         214 ELGGAEAHMAISGNIHFVAEDDDAAELIAKKL  245 (253)
T ss_dssp             HHHSHHHHHHTTCCCSEEESSHHHHHHHHHHH
T ss_pred             hccCHHHhhhccccceEEECCHHHHHHHHHHH
Confidence            32       3579999999886543 334344

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.60  E-value=0.00086  Score=55.81  Aligned_cols=151  Identities=15%  Similarity=0.170  Sum_probs=91.9

Q ss_pred             cCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304           78 GEGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (269)
Q Consensus        78 ~~gv~~I~lnrp-~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~  156 (269)
                      ++.-+.|.-+.+ -+..+++....+.+.++.+.+.+.. +=+|.|.-.|      |..+.+-.    .......+  +..
T Consensus        84 ~G~~v~v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~~-~P~I~~~dsg------G~r~~e~~----~~l~~~~~--~~~  150 (251)
T d1vrga1          84 NGRKVAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMG-IPVIGINDSG------GARIQEGV----DALAGYGE--IFL  150 (251)
T ss_dssp             TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEEEC------SBCGGGTH----HHHHHHHH--HHH
T ss_pred             ccEEEEEeeehhhhhhcccchHHHHHHHHHHHHHHHcC-CCEEEEEcCC------Cccccccc----cccccchH--HHH
Confidence            443344444444 4567899999999999999887664 3345444323      33332210    00011111  122


Q ss_pred             HHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC-ceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCC
Q 024304          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF  235 (269)
Q Consensus       157 l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~  235 (269)
                      .. ....-..|+|+++.|+|.||+......||++|+.++ +.+.+..               |+.+-       ..+|+.
T Consensus       151 ~~-~~~s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i~~aG---------------p~vv~-------~~~ge~  207 (251)
T d1vrga1         151 RN-TLASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFITG---------------PNVIK-------AVTGEE  207 (251)
T ss_dssp             HH-HHHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSSC---------------HHHHH-------HHHCCC
T ss_pred             HH-HHHCCCCCEEEEEccCccccceehhhhCceEEEEccceeEEecC---------------chhhh-------hhcCCc
Confidence            22 333567999999999999999999999999998855 4443311               22211       156778


Q ss_pred             CCHHHH-------HHcCccceecCCC-cHHHHHHHHH
Q 024304          236 YTAEEA-------EKMGLVNTVVPVS-LFVAYLMSLT  264 (269)
Q Consensus       236 i~a~eA-------~~~GLv~~vv~~e-~l~~~a~~la  264 (269)
                      ++.+|.       .+-|.+|.+++.| +..+.+.++.
T Consensus       208 ~~~eelGga~~h~~~sG~~D~v~~de~~a~~~ir~lL  244 (251)
T d1vrga1         208 ISQEDLGGAMVHNQKSGNAHFLADNDEKAMSLVRTLL  244 (251)
T ss_dssp             CCHHHHHBHHHHHHTSCCCSEEESSHHHHHHHHHHHH
T ss_pred             CChHHccchhhhhhccccceEEECCHHHHHHHHHHHH
Confidence            887775       4569999999774 4555555553

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.59  E-value=0.0012  Score=55.20  Aligned_cols=150  Identities=14%  Similarity=0.122  Sum_probs=94.2

Q ss_pred             CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHH
Q 024304           80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQV  159 (269)
Q Consensus        80 gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~  159 (269)
                      .|..+..+..-+..++.....+.+.++.+.+.++. +-+|.|.-.|      |..+.+-    ........  .+.... 
T Consensus        90 ~v~v~a~Dft~~gGS~g~~~g~K~~ra~e~A~~~~-lP~I~l~dsg------Gar~~eg----~~~~~~~~--~~~~~~-  155 (258)
T d2a7sa1          90 DVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTG-RPLIGINDGA------GARIQEG----VVSLGLYS--RIFRNN-  155 (258)
T ss_dssp             EEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCC------SBCGGGC----THHHHHHH--HHHHHH-
T ss_pred             eEEEecccceEeCCccchhhhhHHHHHHHHHHhcC-CceEEEeccC------Ccccccc----cccccchh--hHHHHH-
Confidence            34444444445667999999999999999988765 4455554322      3333220    00001111  122222 


Q ss_pred             HHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCC-ceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCH
Q 024304          160 QIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTA  238 (269)
Q Consensus       160 ~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a  238 (269)
                      ...+-..|+|+++.|+|.||+......||++|+.++ +.+.+..               |+.     .+  ..+|+.++.
T Consensus       156 ~~~~~~vP~I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i~~aG---------------P~v-----V~--~~~ge~~~~  213 (258)
T d2a7sa1         156 ILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFITG---------------PDV-----IK--TVTGEEVTM  213 (258)
T ss_dssp             HHHTTTSCEEEEECSCCBSGGGHHHHHSSEEEEEBTTBBCBSSC---------------HHH-----HH--HHHCCCCCH
T ss_pred             HHHcCCCCEEEEEecCcccHHHHHHHhccceEeecCceEEEccC---------------hhH-----HH--HhcCCccCh
Confidence            334567999999999999999999999999998754 6554421               111     11  246778887


Q ss_pred             HHH-------HHcCccceecCC-CcHHHHHHHHHH
Q 024304          239 EEA-------EKMGLVNTVVPV-SLFVAYLMSLTK  265 (269)
Q Consensus       239 ~eA-------~~~GLv~~vv~~-e~l~~~a~~la~  265 (269)
                      +|.       .+-|.+|.++++ ++..+.++++..
T Consensus       214 eeLGga~~h~~~sG~~D~v~~de~~a~~~~r~~Ls  248 (258)
T d2a7sa1         214 EELGGAHTHMAKSGTAHYAASGEQDAFDYVRELLS  248 (258)
T ss_dssp             HHHHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHH
T ss_pred             hhccCHhHhhhhccccceEeCCHHHHHHHHHHHHH
Confidence            754       456999999975 556666666554

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.56  E-value=0.0013  Score=54.80  Aligned_cols=150  Identities=17%  Similarity=0.168  Sum_probs=93.6

Q ss_pred             CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHH
Q 024304           80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQV  159 (269)
Q Consensus        80 gv~~I~lnrp~~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~  159 (269)
                      .|..+..+..-+..+++....+.+.++++.+.+.. +=+|.|.-.|      |..+.+-.    .....  ...+.... 
T Consensus        89 ~v~v~a~Dftv~gGS~g~~~~~K~~r~~e~A~~~~-lPlI~l~dsg------Garm~e~~----~~~~~--~~~~~~~~-  154 (258)
T d1xnya1          89 PVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTG-CPVVGINDSG------GARIQEGV----ASLGA--YGEIFRRN-  154 (258)
T ss_dssp             EEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCC------SBCGGGTH----HHHHH--HHHHHHHH-
T ss_pred             EEEEEechhhhhcCccchhhHHHHHHHHHHHHHcC-CceEEEecCC------CcccCccc----ccccc--hhHHHHHH-
Confidence            35555555545668999999999999999988765 4466665433      22222210    00000  01111222 


Q ss_pred             HHhcCCCcEEEEEcCcccccchhhhhcccEEEEeC-CceEecCCCCcccCCCChHHHHHHhhhCHHHHHHHHHcCCCCCH
Q 024304          160 QIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD-NAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTA  238 (269)
Q Consensus       160 ~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~-~a~f~~~~~~~Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~~i~a  238 (269)
                      ....-..|+|+++.|+|.||+.....+||++|+.+ .+.+++..+               +.+     +  ..+|+.++.
T Consensus       155 ~~~s~~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~~aGP---------------~vv-----~--~~~ge~i~~  212 (258)
T d1xnya1         155 THASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGP---------------DVI-----K--TVTGEDVGF  212 (258)
T ss_dssp             HHTTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESSCH---------------HHH-----H--HHHCCCCCH
T ss_pred             HHHcCCCCEEEEEcCCcChhHHHHHHhccchhhcccceEEEecCH---------------HHH-----H--HHhcCccCh
Confidence            22244699999999999999999899999988875 566654221               111     1  256777887


Q ss_pred             HHH-------HHcCccceecCC-CcHHHHHHHHHH
Q 024304          239 EEA-------EKMGLVNTVVPV-SLFVAYLMSLTK  265 (269)
Q Consensus       239 ~eA-------~~~GLv~~vv~~-e~l~~~a~~la~  265 (269)
                      +|+       ..-|++|.++++ ++..+.++++..
T Consensus       213 eelgga~~h~~~sG~~d~v~~de~ea~~~~r~~Ls  247 (258)
T d1xnya1         213 EELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLS  247 (258)
T ss_dssp             HHHHBHHHHHHTSSCCSEEESSHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHhcCCeeEEEeCCHHHHHHHHHHHHH
Confidence            775       346999999975 455555555543

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=97.36  E-value=0.0005  Score=58.42  Aligned_cols=175  Identities=15%  Similarity=0.130  Sum_probs=96.0

Q ss_pred             cCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304           78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (269)
Q Consensus        78 ~~gv~~I~lnrp~-~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~  156 (269)
                      ++.-+.|.-|.+. +..++++...+.+.++++.+.+.. +=+|.|.-.+      |..+..-.+. ........+  ...
T Consensus       102 ~G~~v~v~a~D~t~~gGs~~~~~~~K~~r~~~lA~~~~-lP~I~l~ds~------Ga~~~~~~e~-~~~~~~~g~--~~~  171 (287)
T d1pixa2         102 NGKWCVVVASDNKKLAGAWVPGQAECLLRASDTAKTLH-VPLVYVLNCS------GVKFDEQEKV-YPNRRGGGT--PFF  171 (287)
T ss_dssp             TTEEEEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHT-CCEEEEECCC------EECGGGHHHH-SSSTTSTTH--HHH
T ss_pred             ccceEEEEEeccccccccchhhHHHHHHHHHHhhhhcC-CCEEEEecCC------cccCCcchhh-ccchhhHHH--HHH
Confidence            4444444445544 557899999999999999887654 3455554333      2222210000 000000101  112


Q ss_pred             HHHHHhcCCCcEEEEEcCcccccchhhhhcccEEEEeCCceEecCCCCc--ccCCCChHHHHHHhhhCHHHHHHHHHcCC
Q 024304          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV--GSFDAGYGSSIMSRLVGPKKAREMWFLAR  234 (269)
Q Consensus       157 l~~~i~~~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~--Gl~p~~g~~~~l~r~~G~~~a~~l~ltg~  234 (269)
                      -+..+.....|+|+.|-|.|.|||.-.+++||++++.+++.+.+..+.+  +..+..+........+......  -.+-+
T Consensus       172 ~~a~ls~~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~~~~~~~~~~~ei~~~~ge--~~~~e  249 (287)
T d1pixa2         172 RNAELNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLEYANEIADMVDR--TGKTE  249 (287)
T ss_dssp             HHHHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCSSSSCCHHHHHHHHHHHHT--TCCCC
T ss_pred             HHHHHhhcCCCeEEEecCCccccceeccccceeEEecCCeEEEEECHHHhcccchhhhhhhhhHHHHHhhhcc--ccccc
Confidence            2335566789999999999999998888888888888999887755442  2222221111111111110000  02334


Q ss_pred             CCCHHHH--HHcCccceecCCC-cHHHHHHHHH
Q 024304          235 FYTAEEA--EKMGLVNTVVPVS-LFVAYLMSLT  264 (269)
Q Consensus       235 ~i~a~eA--~~~GLv~~vv~~e-~l~~~a~~la  264 (269)
                      .+-+.+.  ..-|.+|.+++.| +..+.++++.
T Consensus       250 eLGGa~~H~~~sG~~d~v~~~e~~ai~~~r~~l  282 (287)
T d1pixa2         250 PPGAVDIHYTETGFMREVYASEEGVLEGIKKYV  282 (287)
T ss_dssp             CSSBHHHHTTTSCCSCEEESSHHHHHHHHHHHH
T ss_pred             ccccHHHhhhhcccceeecCCHHHHHHHHHHHH
Confidence            5555544  3569999999874 3444444443

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=0.0022  Score=54.89  Aligned_cols=136  Identities=16%  Similarity=0.164  Sum_probs=91.9

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEE
Q 024304           93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV  172 (269)
Q Consensus        93 Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v  172 (269)
                      .+++++-...-.+.++.++.-. +-+|-|-=..  .|-.|.+.++..          ........+..+..++.|+|+.|
T Consensus       130 G~~~p~~~rKa~r~~~~a~~~~-~Pii~~vDtp--G~~~g~~~E~~g----------~~~~~a~~~~~~~~~~vP~i~vv  196 (316)
T d2f9ya1         130 GMPAPEGYRKALRLMQMAERFK-MPIITFIDTP--GAYPGVGAEERG----------QSEAIARNLREMSRLGVPVVCTV  196 (316)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEES--CSCCSHHHHHTT----------HHHHHHHHHHHHHTCSSCEEEEE
T ss_pred             ccccHHHHHHHHHHHHHHHHcC-cceEEEEecC--cccCCccccccc----------HHHHHHHHHHHHHhCCCceEEEE
Confidence            4688889888888888877643 3344443222  133354433321          11224556778889999999999


Q ss_pred             cCcccccchhhhhcccEEEEeCCceEecCCCCcccCCCChHHHHHHhh-hC-HHHHHHHHHcCCCCCHHHHHHcCcccee
Q 024304          173 AGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL-VG-PKKAREMWFLARFYTAEEAEKMGLVNTV  250 (269)
Q Consensus       173 ~G~a~GgG~~lal~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~-~G-~~~a~~l~ltg~~i~a~eA~~~GLv~~v  250 (269)
                      -|.+.|||.-....+|.+.+-++|+|+.-       .+.|.+..+-+- -- ...|..     ..+++++.+++|+||+|
T Consensus       197 ~g~g~~gga~a~~~~d~v~m~~~a~~svi-------spEg~AsILwkd~~~a~eaAea-----lklta~dL~~lgiIDeI  264 (316)
T d2f9ya1         197 IGEGGSGGALAIGVGDKVNMLQYSTYSVI-------SPEGCASILWKSADKAPLAAEA-----MGIIRPRLKELKLIDSI  264 (316)
T ss_dssp             EEEEEHHHHHTTCCCSEEEECTTCEEESS-------CHHHHHHHHSSCSTTHHHHHHH-----HTCSHHHHHTTTSCSCC
T ss_pred             EhhhhchhhhhhhhhhHHHHHhhhHHhhc-------cchhhhhHhhccchhhcchHHH-----HhhhhHHHHHcCchhhc
Confidence            99999999988888999999999999842       233334444331 11 112222     36899999999999999


Q ss_pred             cCC
Q 024304          251 VPV  253 (269)
Q Consensus       251 v~~  253 (269)
                      +|.
T Consensus       265 I~E  267 (316)
T d2f9ya1         265 IPE  267 (316)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            963

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.98  E-value=0.0036  Score=52.50  Aligned_cols=165  Identities=19%  Similarity=0.225  Sum_probs=105.9

Q ss_pred             cCCEEEEEEcCCCCC-CCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304           78 GEGIAKITINRPDRR-NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (269)
Q Consensus        78 ~~gv~~I~lnrp~~~-Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~  156 (269)
                      ++.-.-|.-|+|... .+++.+-.....+.++.++.. ++=+|.|.=..  .|..|-+.+...          .......
T Consensus        68 ~G~~vgvian~~~~~~G~~~~~~~~Ka~rfi~lc~~~-~iPlv~l~dtp--Gf~~G~~~E~~g----------~~~~ga~  134 (271)
T d2a7sa2          68 DGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDVP--GFLPGTDQEYNG----------IIRRGAK  134 (271)
T ss_dssp             SSCEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC--CBCCCHHHHHHC----------HHHHHHH
T ss_pred             CCeEEEEEeccccccCCCcCHHHHHHHHHHHHHHHHh-CCceEEeechh--hhhhhccHHHhh----------HHHHHHH
Confidence            555555555666533 689999999999999888654 46777776554  477775444311          1223557


Q ss_pred             HHHHHhcCCCcEEEEEcCcccccchhhh----hcccEEEEeCCceEecCCCCcccCCCChHHHHHHh-hhCHH-------
Q 024304          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLH----MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR-LVGPK-------  224 (269)
Q Consensus       157 l~~~i~~~~kP~Ia~v~G~a~GgG~~la----l~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r-~~G~~-------  224 (269)
                      +...+..+..|.|+.+-|.+.|+|....    +.+|++++.+++.++.-+       +.++...+-+ .+...       
T Consensus       135 ~~~a~a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~igvMg-------pegaa~v~~~~~l~~~~~~~~~~  207 (271)
T d2a7sa2         135 LLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVMG-------ASGAVGFVYRQQLAEAAANGEDI  207 (271)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSC-------HHHHHHHHTTTTTTGGGTSSCCT
T ss_pred             HHHHHHhCCCCeEEEEeCCccchhhhhhcccccccceEEEecceeEeecC-------HHHHHHHHHHHhhhhhhhcccch
Confidence            7889999999999999999999875432    347999999988887633       2222333222 11110       


Q ss_pred             ---HHH-HHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHH
Q 024304          225 ---KAR-EMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMS  262 (269)
Q Consensus       225 ---~a~-~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~  262 (269)
                         +.+ ..-..-..-++-.|...|++|.|+++.+......+
T Consensus       208 ~~~~~~~~~e~~e~~~~p~~aa~~g~iD~VIdP~dTR~~L~~  249 (271)
T d2a7sa2         208 DKLRLRLQQEYEDTLVNPYVAAERGYVDAVIPPSHTRGYIGT  249 (271)
T ss_dssp             TSSTTHHHHHHHTTTSBSHHHHHHTSSSEECCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHH
Confidence               111 11122333567788889999999998876665443

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.47  E-value=0.026  Score=46.79  Aligned_cols=165  Identities=16%  Similarity=0.209  Sum_probs=104.5

Q ss_pred             cCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304           78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (269)
Q Consensus        78 ~~gv~~I~lnrp~-~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~  156 (269)
                      ++...-|.-|+|. ...+++.+-.....+.++.++.. ++=.|.|.=..  .|..|.+.+...         . ......
T Consensus        65 ~G~~vgvian~~~~~~G~~~~~~a~Kaa~fi~lc~~~-~iPli~l~Dtp--Gf~~G~~~E~~g---------~-~~~ga~  131 (264)
T d1vrga2          65 QGKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDTP--GYLPGVAQEHGG---------I-IRHGAK  131 (264)
T ss_dssp             TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC--CBCCCHHHHHTT---------H-HHHHHH
T ss_pred             cCceEEEEeccccccccchhhhhHHHHHHHHHHHHHh-CCceEEEeecc--cccccHHHHHHh---------H-HHHHHH
Confidence            5544444455555 33589999999999999888764 35666665543  466665544311         1 223456


Q ss_pred             HHHHHhcCCCcEEEEEcCcccccchhhh----hcccEEEEeCCceEecCCCCcccCCCChHHHHHHh-hh---C-H-HHH
Q 024304          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLH----MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR-LV---G-P-KKA  226 (269)
Q Consensus       157 l~~~i~~~~kP~Ia~v~G~a~GgG~~la----l~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r-~~---G-~-~~a  226 (269)
                      ++..+..+..|.|+.+=|.+.|+|..-.    +.+|++++.+++.++.-+..       ++...+-+ .+   . . ..-
T Consensus       132 ~~~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~vm~pe-------~aa~v~~~~~l~~~~~~~~~~  204 (264)
T d1vrga2         132 LLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAVMGPE-------GAANIIFKREIEASSNPEETR  204 (264)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSCHH-------HHHHHHTHHHHHHSSCHHHHH
T ss_pred             HHHHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEecCHH-------HhhhhhhhhhhhhhhCcHHHH
Confidence            7889999999999999999999876322    25899999988888763332       22322211 11   0 0 011


Q ss_pred             HHH--HHcCCCCCHHHHHHcCccceecCCCcHHHHHHH
Q 024304          227 REM--WFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMS  262 (269)
Q Consensus       227 ~~l--~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~  262 (269)
                      +++  .+.-+.-++-.+...|++|.|+++.+......+
T Consensus       205 ~~~~~~~~e~~~~~~~aa~~g~iD~VIdP~dTR~~L~~  242 (264)
T d1vrga2         205 RKLIEEYKQQFANPYIAASRGYVDMVIDPRETRKYIMR  242 (264)
T ss_dssp             HHHHHHHHHHTSSHHHHHHTTSSSEECCGGGHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHH
Confidence            111  111123467888899999999999887766544

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.29  E-value=0.022  Score=47.22  Aligned_cols=165  Identities=18%  Similarity=0.117  Sum_probs=104.1

Q ss_pred             cCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304           78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (269)
Q Consensus        78 ~~gv~~I~lnrp~-~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~  156 (269)
                      ++.-.-|.-|+|. ...+++.+-.....+.++.++.. ++=+|.|.=..  .|-.|.+.+...          .......
T Consensus        63 ~G~~vgvia~~~~~~~G~~~~~~a~Ka~~fi~lc~~~-~iPli~l~d~p--Gf~~G~~~E~~g----------~~~~ga~  129 (263)
T d1xnya2          63 EGRPVGIVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVP--GFLPGVDQEHDG----------IIRRGAK  129 (263)
T ss_dssp             TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC--CBCCCHHHHHTT----------HHHHHHH
T ss_pred             ccceEEEEecccceecCCcchhhHHHHHHHHHHHHHh-CCceEEeeccc--ccccchhHHHHh----------HHHHHHH
Confidence            5544444455554 33599999999999999888764 35667666544  377775544311          1223456


Q ss_pred             HHHHHhcCCCcEEEEEcCcccccchhhhh----cccEEEEeCCceEecCCCCcccCCCChHHHHHHhhhC----------
Q 024304          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHM----VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVG----------  222 (269)
Q Consensus       157 l~~~i~~~~kP~Ia~v~G~a~GgG~~lal----~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r~~G----------  222 (269)
                      ++..+.++..|.|+.+-|.+.|+|.....    ..|++++.+++.++.-...       ++...+-+.--          
T Consensus       130 ~~~a~a~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~gvm~pe-------~aa~il~~~~~~~a~~~~~~~  202 (263)
T d1xnya2         130 LIFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAVMGAQ-------GAVNILHRRTIADAGDDAEAT  202 (263)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSCHH-------HHHHHHTHHHHHSCCTTCSSS
T ss_pred             HHHHHHccCCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhhccCHH-------HHHHHHHHHHHhhhccchHHH
Confidence            78899999999999999999998765432    4689999988888763322       23333322100          


Q ss_pred             -HHHHHHHHHcCCCCCHHHHHHcCccceecCCCcHHHHHHHHH
Q 024304          223 -PKKAREMWFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMSLT  264 (269)
Q Consensus       223 -~~~a~~l~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~la  264 (269)
                       .....++  .-...++..+...|++|.|+++++......+.-
T Consensus       203 ~~~~~~~~--~~~~~~p~~aA~~g~iD~VIdP~dTR~~L~~~L  243 (263)
T d1xnya2         203 RARLIQEY--EDALLNPYTAAERGYVDAVIMPSDTRRHIVRGL  243 (263)
T ss_dssp             HHHHHHHH--HHHHSSSHHHHHHTSSSEECCGGGHHHHHHHHH
T ss_pred             HHHHHHHH--HHHhcCHHHHHHcccCCcccCHHHHHHHHHHHH
Confidence             0000111  011234667888899999999988776655443

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=96.02  E-value=0.031  Score=46.35  Aligned_cols=165  Identities=17%  Similarity=0.146  Sum_probs=102.9

Q ss_pred             cCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHH
Q 024304           78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (269)
Q Consensus        78 ~~gv~~I~lnrp~-~~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~  156 (269)
                      ++.-.-|.=|+|. ...+++++-.....+.++.++. -++=+|.|.=..  .|..|-+.+...         . ......
T Consensus        65 ~G~~vgvian~~~~~~G~~~~~~a~Kaarfi~lc~~-~~iPlv~l~D~p--Gf~~G~~~E~~g---------~-i~~ga~  131 (264)
T d1on3a2          65 NGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDS-FNIPLVQLVDVP--GFLPGVQQEYGG---------I-IRHGAK  131 (264)
T ss_dssp             TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEEC--CBCCCHHHHHTT---------H-HHHHHH
T ss_pred             ecceEEEEeccchhcccccChHHHHHHHHHHHHHHh-cCCceEEEeccc--cccccHHHHHHH---------H-HHHHHH
Confidence            5544444455555 3468999999999998888776 346677776543  477776544311         1 223557


Q ss_pred             HHHHHhcCCCcEEEEEcCcccccchhhhh----cccEEEEeCCceEecCCCCcccCCCChHHHHHHh-hh----CHH--H
Q 024304          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHM----VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR-LV----GPK--K  225 (269)
Q Consensus       157 l~~~i~~~~kP~Ia~v~G~a~GgG~~lal----~~D~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~r-~~----G~~--~  225 (269)
                      ++..+.++..|.|+.+-|.+.|+|..-.+    ..|++++.+++.++.-       ++.++...+-+ .+    ...  .
T Consensus       132 ~~~a~a~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~vM-------g~Egaa~v~~~~el~a~~~~~~~~  204 (264)
T d1on3a2         132 MLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVM-------GAEGAANVIFRKEIKAADDPDAMR  204 (264)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEESS-------CHHHHHHHHTHHHHHHSSCHHHHH
T ss_pred             HHHHHHcCCCCEEEEEeccccCccccccccccCChhheeeHHhhHhhhc-------cHHHHHHHHHhhhhhhhhhhhhhh
Confidence            78899999999999999999998864332    4688888888877653       22333333221 11    000  0


Q ss_pred             HHHH-HHcCCCCCHHHHHHcCccceecCCCcHHHHHHH
Q 024304          226 AREM-WFLARFYTAEEAEKMGLVNTVVPVSLFVAYLMS  262 (269)
Q Consensus       226 a~~l-~ltg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~  262 (269)
                      ...+ -..-+.-++-.|...|++|.|+++.+.......
T Consensus       205 ~~~~~e~~~~~~~p~~aA~~g~iD~VIdP~eTR~~L~~  242 (264)
T d1on3a2         205 AEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIAS  242 (264)
T ss_dssp             HHHHHHHHHHHSSHHHHHHTTSSSEECCGGGHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHH
Confidence            1101 011122456778889999999998876554443

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=94.31  E-value=0.98  Score=37.49  Aligned_cols=151  Identities=11%  Similarity=0.091  Sum_probs=91.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEE
Q 024304           92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM  171 (269)
Q Consensus        92 ~Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~  171 (269)
                      ..+++.+-.....+.++.++... +=+|.|.=..  .|-.|-+.+..         . .......++..+.++..|.|+.
T Consensus        96 ~G~l~~~~a~K~~rfi~lc~~~~-iPlv~l~D~p--Gf~~g~~~E~~---------g-~~r~ga~~~~a~~~~~VP~isv  162 (299)
T d1pixa3          96 GGKLYRQGLVKMNEFVTLCARDR-LPIVWIQDTT--GIDVGNDAEKA---------E-LLGLGQSLIYSIQTSHIPQFEI  162 (299)
T ss_dssp             TTEECHHHHHHHHHHHHHHHHTT-CCEEEEECCC--EECCSHHHHHT---------T-HHHHHHHHHHHHHTCCCCEEEE
T ss_pred             CCccCHHHHHHHHHHHHHHHHcC-CeEEEEEeCC--CcccchHHHhh---------h-HHHHHHHHHHHHHhhcceeEEE
Confidence            46789999999999999887643 5566665433  46666544321         1 1223456778889999999999


Q ss_pred             EcCcccccchhhhh----cccEE--EEeCCceEecCCCCcccCCCChHHHHHH-hhhCHH------------HHHHHHH-
Q 024304          172 VAGYAVGGGHVLHM----VCDLT--IAADNAIFGQTGPKVGSFDAGYGSSIMS-RLVGPK------------KAREMWF-  231 (269)
Q Consensus       172 v~G~a~GgG~~lal----~~D~~--ia~~~a~f~~~~~~~Gl~p~~g~~~~l~-r~~G~~------------~a~~l~l-  231 (269)
                      |=|.+.|+|....+    ..|++  ++.+.+.+       |..++.++...+- +.+...            .-+++.- 
T Consensus       163 i~r~~~G~a~~am~g~~~~~~~~~~~awP~aei-------gvMg~E~aa~vl~~~el~~~~~~~~~~~e~~e~~~~~~~~  235 (299)
T d1pixa3         163 TLRKGTAAAHYVLGGPQGNDTNAFSIGTAATEI-------AVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQA  235 (299)
T ss_dssp             ECSEEETTHHHHTTCTTCTTTEEEEEECTTCEE-------ESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             EecccccccccccccCccCcccceecCCCcccc-------ccccchhhheeehhhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence            99999998864332    23433  33444444       5444444444432 222110            0111111 


Q ss_pred             cCCCCCHHHHHHcCccceecCCCcHHHHHHH
Q 024304          232 LARFYTAEEAEKMGLVNTVVPVSLFVAYLMS  262 (269)
Q Consensus       232 tg~~i~a~eA~~~GLv~~vv~~e~l~~~a~~  262 (269)
                      .-+..++..+...|++|.|+++.+.......
T Consensus       236 ~~~~~sp~~aAs~~~iD~IIDP~dTR~~L~~  266 (299)
T d1pixa3         236 FYTKSRPKVCAELGLVDEIVDMNKIRGYVEA  266 (299)
T ss_dssp             HHHTTSHHHHHHHTSSSEECCTTTHHHHHHH
T ss_pred             HHHhcCHHHHHHhCCcCeeECHHHHHHHHHH
Confidence            1123578888999999999998776554433

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.00  E-value=0.011  Score=50.68  Aligned_cols=37  Identities=19%  Similarity=0.082  Sum_probs=34.3

Q ss_pred             CCCcEEEEEcCcccccchhhhhcccEEEEeCCceEec
Q 024304          164 LPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ  200 (269)
Q Consensus       164 ~~kP~Ia~v~G~a~GgG~~lal~~D~~ia~~~a~f~~  200 (269)
                      -..|+|++|.|.|+|+|.-+...||++|+.+++.+.+
T Consensus       239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~l  275 (333)
T d1uyra1         239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIIL  275 (333)
T ss_dssp             HHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEES
T ss_pred             CCCCEEEEEeCCccccceeecccccEEEEeCCceEEe
Confidence            5699999999999999999999999999999987765

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.18  E-value=1.4  Score=38.05  Aligned_cols=96  Identities=20%  Similarity=0.267  Sum_probs=59.8

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCceeccccccccccCCccchhhhhhhhHHHHHHHHhcCCCcEEEEE
Q 024304           93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV  172 (269)
Q Consensus        93 Nal~~~~~~~L~~al~~~~~d~~~~vvVl~g~g~~~Fc~G~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia~v  172 (269)
                      ..+.++-.....+++.++.+..++-+|+|.-.-  .|..|-+-+.-         .. ......+...+.++..|+|..|
T Consensus       108 gv~~p~sA~K~A~~i~d~cd~~~lPLi~l~D~p--GF~~G~~~E~~---------gi-lr~GA~iv~A~~~~~vP~i~vI  175 (404)
T d1uyra2         108 QVWHPNSAFKTAQAINDFNNGEQLPMMILANWR--GFSGGQRDMFN---------EV-LKYGSFIVDALVDYKQPIIIYI  175 (404)
T ss_dssp             TCBCHHHHHHHHHHHHHHHTTSCCCEEECCCCC--CBCC------C---------TH-HHHHHHHHHHHHTCCSCEEEEE
T ss_pred             CccCchHHHHHHHHHHHhhhccccceEEeecCC--cccCcHHHHHH---------HH-HHHHHHHHHHHHhcCCCEEEEE
Confidence            467788888899999888776677788886543  58888654331         11 1124567788999999999999


Q ss_pred             --cCcccccchhhhh---ccc-E-EEEeCCceEec
Q 024304          173 --AGYAVGGGHVLHM---VCD-L-TIAADNAIFGQ  200 (269)
Q Consensus       173 --~G~a~GgG~~lal---~~D-~-~ia~~~a~f~~  200 (269)
                        .|.+.||.+.+.-   ..| + ++|-+++.++.
T Consensus       176 ~~~g~~~GGa~vv~~~~~~~~~~~~yAwP~a~~gV  210 (404)
T d1uyra2         176 PPTGELRGGSWVVVDPTINADQMEMYADVNARAGV  210 (404)
T ss_dssp             CTTCEEEHHHHHTTCGGGGTTTEEEEEETTCEEES
T ss_pred             eCCcccchhhhhcccCccCCccceEEECCcccccc
Confidence              5666665543321   122 2 45556665554