Citrus Sinensis ID: 024340

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
MWNFASKAISGAIRLKNDALKPSQVSSELSDDDASLNNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQKNYYLLWMVESMNGDRSKSNPHFRGDHQPASSLNRNSAVRNQVSHAHNGRATCSHVSRQSEIRRDEGRFLTGHLNAERLQLSLRKSLVFFAQLTAKFPLIIVLILIILYAIPASAAILALYILITIVFAIPSCLVLYFALPILDWLVREIIA
cccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcHHHHHHHHHHc
cccHHHHHHHccccccccccccccccccccccccccccccccccccccEcccccccccccEEEccccHHHHHHHHHHHHHHcccccccccccEEEEcccccEEEEEEEEccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHc
MWNFASKAISGAIRlkndalkpsqvsselsdddaslnnsreeglecpicwesfnvvenlpyvLWCGHTLCKNCVLGLQRAvirlptlpfqlpffitcpwcnmvSLRLIckgnlkfpqkNYYLLWMVEsmngdrsksnphfrgdhqpasslnrnsAVRNqvshahngratcshvsrqseirrdegrflTGHLNAERLQLSLRKSLVFFAQLTAKFPLIIVLILIILYAIPASAAILALYILITIVFAIPSCLVLYFALPILDWLVREIIA
MWNFASKAISgairlkndalkpsqvsselsdddaslnnSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQKNYYLLWMVESMNGDRSKSNPHFRGDHQPASSLNRNSAVRNQVShahngratcshvsrqseirrDEGRFLTGHLNAERLQLSLRKSLVFFAQLTAKFPLIIVLILIILYAIPASAAILALYILITIVFAIPSCLVLYFALPILDWLVREIIA
MWNFASKAISGAIRLKNDALKPSQVSSELSDDDASLNNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQKNYYLLWMVESMNGDRSKSNPHFRGDHQPASSLNRNSAVRNQVSHAHNGRATCSHVSRQSEIRRDEGRFLTGHLNAERLQLSLRKSLVFFAQLTAKFPliivliliilyaipasaailalyilitiVFAIPSCLVLYFALPILDWLVREIIA
*******************************************LECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQKNYYLLWMVE*********************************************************RFLTGHLNAERLQLSLRKSLVFFAQLTAKFPLIIVLILIILYAIPASAAILALYILITIVFAIPSCLVLYFALPILDWLVREII*
*********************************************CPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQKNYYLLW********************************************************************AERLQLSLRKSLVFFAQLTAKFPLIIVLILIILYAIPASAAILALYILITIVFAIPSCLVLYFALPILDWLVREIIA
MWNFASKAISGAIRLKNDAL*********************EGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQKNYYLLWMVESMNGDRSKSNPHFRGDHQPASSLNRNSAVRNQ*******************IRRDEGRFLTGHLNAERLQLSLRKSLVFFAQLTAKFPLIIVLILIILYAIPASAAILALYILITIVFAIPSCLVLYFALPILDWLVREIIA
******************************************GLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQKNYYLLWMVESMN******************************************************RFLTGHLNAERLQLSLRKSLVFFAQLTAKFPLIIVLILIILYAIPASAAILALYILITIVFAIPSCLVLYFALPILDWLVREIIA
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MWNFASKAISGAIRLKNDALKPSQVSSELSDDDASLNNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQKNYYLLWMVESMNGDRSKSNPHFRGDHQPASSLNRNSAVRNQVSHAHNGRATCSHVSRQSEIRRDEGRFLTGHLNAERLQLSLRKSLVFFAQLTAKFPLIIVLILIILYAIPASAAILALYILITIVFAIPSCLVLYFALPILDWLVREIIA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query269 2.2.26 [Sep-21-2011]
Q13049 653 E3 ubiquitin-protein liga yes no 0.197 0.081 0.365 9e-05
Q8CH72 655 E3 ubiquitin-protein liga yes no 0.197 0.080 0.365 0.0001
>sp|Q13049|TRI32_HUMAN E3 ubiquitin-protein ligase TRIM32 OS=Homo sapiens GN=TRIM32 PE=1 SV=2 Back     alignment and function desciption
 Score = 47.8 bits (112), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 10/63 (15%)

Query: 42  EGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCN 101
           E LECPIC ESF   +  P +L CGHT+C+ C+  L  + I            + CP+C+
Sbjct: 16  EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSIN----------GVRCPFCS 65

Query: 102 MVS 104
            ++
Sbjct: 66  KIT 68
Has an E3 ubiquitin ligase activity. Ubiquitinates DTNBP1 (dysbindin) and promotes its degradation. May play a significant role in mediating the biological activity of the HIV-1 Tat protein in vivo. Binds specifically to the activation domain of HIV-1 Tat and can also interact with the HIV-2 and EIAV Tat proteins in vivo.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q8CH72|TRI32_MOUSE E3 ubiquitin-protein ligase TRIM32 OS=Mus musculus GN=Trim32 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query269
255547293269 ubiquitin-protein ligase, putative [Rici 1.0 1.0 0.710 1e-106
225457307268 PREDICTED: uncharacterized protein LOC10 0.996 1.0 0.691 1e-104
224121490266 predicted protein [Populus trichocarpa] 0.977 0.988 0.661 1e-93
359806827264 uncharacterized protein LOC100809368 [Gl 0.973 0.992 0.627 2e-93
225452936269 PREDICTED: uncharacterized protein LOC10 0.996 0.996 0.644 2e-91
224141043267 predicted protein [Populus trichocarpa] 0.992 1.0 0.646 2e-91
356573143264 PREDICTED: uncharacterized protein LOC10 0.973 0.992 0.619 5e-91
388503120266 unknown [Lotus japonicus] 0.977 0.988 0.622 2e-87
356526471267 PREDICTED: uncharacterized protein LOC10 0.988 0.996 0.618 2e-86
357496653266 CCP [Medicago truncatula] gi|217074134|g 0.981 0.992 0.605 3e-86
>gi|255547293|ref|XP_002514704.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223546308|gb|EEF47810.1| ubiquitin-protein ligase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/269 (71%), Positives = 219/269 (81%)

Query: 1   MWNFASKAISGAIRLKNDALKPSQVSSELSDDDASLNNSREEGLECPICWESFNVVENLP 60
           MW+FAS+AISG I LKND LK  Q SSE SDD+  +NNSREEGLECPICWESFN+VEN+P
Sbjct: 1   MWSFASRAISGTIGLKNDLLKLRQASSECSDDEPFVNNSREEGLECPICWESFNIVENVP 60

Query: 61  YVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQKNY 120
           YVLWCGHTLCKNCVLGLQRA+++   LP QLPFFI+CPWCN++SLRL+ KGNL+FP+KNY
Sbjct: 61  YVLWCGHTLCKNCVLGLQRAIVKPLPLPIQLPFFISCPWCNLLSLRLVYKGNLRFPRKNY 120

Query: 121 YLLWMVESMNGDRSKSNPHFRGDHQPASSLNRNSAVRNQVSHAHNGRATCSHVSRQSEIR 180
           +LLWMVES+NGDRSKS   F GD+QP  S NRN  V NQV    N RA C+H +RQ    
Sbjct: 121 FLLWMVESLNGDRSKSYFSFHGDNQPVCSSNRNVPVGNQVGQVINRRALCTHPTRQLVPN 180

Query: 181 RDEGRFLTGHLNAERLQLSLRKSLVFFAQLTAKFPLIIVLILIILYAIPASAAILALYIL 240
            +EG     +LNAERLQLSLRKSL  F  LTAKFPLI + +L+ILYAIPASAAILALYIL
Sbjct: 181 HNEGWLNNSYLNAERLQLSLRKSLALFVHLTAKFPLIAIFLLVILYAIPASAAILALYIL 240

Query: 241 ITIVFAIPSCLVLYFALPILDWLVREIIA 269
           IT+VFA+PS L+LYFALP LDWLVREII 
Sbjct: 241 ITLVFALPSFLILYFALPSLDWLVREIIT 269

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225457307|ref|XP_002284521.1| PREDICTED: uncharacterized protein LOC100241642 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224121490|ref|XP_002318595.1| predicted protein [Populus trichocarpa] gi|222859268|gb|EEE96815.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359806827|ref|NP_001241055.1| uncharacterized protein LOC100809368 [Glycine max] gi|255644418|gb|ACU22714.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225452936|ref|XP_002284184.1| PREDICTED: uncharacterized protein LOC100262874 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224141043|ref|XP_002323884.1| predicted protein [Populus trichocarpa] gi|118481933|gb|ABK92900.1| unknown [Populus trichocarpa] gi|222866886|gb|EEF04017.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356573143|ref|XP_003554723.1| PREDICTED: uncharacterized protein LOC100815196 [Glycine max] Back     alignment and taxonomy information
>gi|388503120|gb|AFK39626.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356526471|ref|XP_003531841.1| PREDICTED: uncharacterized protein LOC100811549 isoform 1 [Glycine max] gi|356526473|ref|XP_003531842.1| PREDICTED: uncharacterized protein LOC100811549 isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|357496653|ref|XP_003618615.1| CCP [Medicago truncatula] gi|217074134|gb|ACJ85427.1| unknown [Medicago truncatula] gi|355493630|gb|AES74833.1| CCP [Medicago truncatula] gi|388508162|gb|AFK42147.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query269
TAIR|locus:2091301263 AT3G29270 [Arabidopsis thalian 0.940 0.961 0.479 1.4e-64
TAIR|locus:2007101270 AT1G69330 [Arabidopsis thalian 0.977 0.974 0.457 2.2e-57
TAIR|locus:2019080261 AT1G74370 [Arabidopsis thalian 0.944 0.973 0.470 5.3e-56
ZFIN|ZDB-GENE-070705-92187 si:ch211-202f5.2 "si:ch211-202 0.293 0.422 0.348 1.6e-07
UNIPROTKB|C9IZE0114 TRIM59 "Tripartite motif-conta 0.215 0.508 0.369 5.9e-05
UNIPROTKB|C9J9F0111 TRIM59 "Tripartite motif-conta 0.215 0.522 0.369 5.9e-05
WB|WBGene00021763305 Y51F10.2 [Caenorhabditis elega 0.301 0.265 0.322 6.1e-05
UNIPROTKB|Q5JVY0173 TRIM32 "E3 ubiquitin-protein l 0.200 0.312 0.436 7.6e-05
UNIPROTKB|C9JNB968 TRIM59 "Tripartite motif-conta 0.200 0.794 0.393 0.00013
WB|WBGene00206482101 B0416.10 [Caenorhabditis elega 0.219 0.584 0.383 0.00035
TAIR|locus:2091301 AT3G29270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 129/269 (47%), Positives = 168/269 (62%)

Query:     1 MWNFASKAISGAIRLKNDALKPSQVSSELSDDDASLNNSREEGLECPICWESFNVVENLP 60
             MWN AS  ++G I  KND  +P    +E SDDD S   S++EGLECPICWESFN+VEN+P
Sbjct:     9 MWNLASSYLTGNIGPKNDIRRPVHAHAECSDDDVSSVGSKDEGLECPICWESFNIVENVP 68

Query:    61 YVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQKNY 120
             YVLWCGHT+CKNC+LGLQ A+++LPT P QLP FI+CPWCN++S RL+ +G L+FP KNY
Sbjct:    69 YVLWCGHTMCKNCILGLQWAIVKLPTHPVQLPLFISCPWCNLLSFRLVFRGTLRFPHKNY 128

Query:   121 YLLWMVESMNGDRSKSNPHFRGDHQPASSLNRNSAVRNQVSHAHNGRATCSHVSRQSEIR 180
             ++LWMVE MNG+R +++P   G  Q     + N+       H     + C H +R    +
Sbjct:   129 FVLWMVERMNGER-RNSP---GGAQT----DGNN------DHTRETPSPCLH-NRHHRSQ 173

Query:   181 RDEGRFLTGH-LNAERLQLSLRKSLVFFAQLTAKFPXXXXXXXXXXXXXXXXXXXXXXXX 239
              +  R +  H +  + +Q SLRKSLVFF QLTAKFP                        
Sbjct:   174 PEPSRSVNDHRIPRDNIQTSLRKSLVFFVQLTAKFPLVVIFLLIILYAIPTSAAILAMYI 233

Query:   240 XXXXVFAIPSCLVLYFALPILDWLVREII 268
                 + A+PS L+LYFA P LDWLVREI+
Sbjct:   234 LVTLLLALPSFLILYFAYPCLDWLVREIV 262
GO:0005737 "cytoplasm" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA
TAIR|locus:2007101 AT1G69330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019080 AT1G74370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070705-92 si:ch211-202f5.2 "si:ch211-202f5.2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|C9IZE0 TRIM59 "Tripartite motif-containing protein 59" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|C9J9F0 TRIM59 "Tripartite motif-containing protein 59" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
WB|WBGene00021763 Y51F10.2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q5JVY0 TRIM32 "E3 ubiquitin-protein ligase TRIM32" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|C9JNB9 TRIM59 "Tripartite motif-containing protein 59" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
WB|WBGene00206482 B0416.10 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query269
pfam1344555 pfam13445, zf-RING_LisH, RING-type zinc-finger, Li 4e-07
>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif Back     alignment and domain information 
 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 12/34 (35%), Positives = 15/34 (44%)

Query: 44 LECPICWESFNVVENLPYVLWCGHTLCKNCVLGL 77
            CPI  E     EN P +L CGH   +  +  L
Sbjct: 11 FVCPISKEVMTDEENPPVMLPCGHVYSRKALEKL 44

This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 269
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 99.21
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 99.2
TIGR00599 397 rad18 DNA repair protein rad18. This family is bas 99.14
smart0050463 Ubox Modified RING finger domain. Modified RING fi 99.11
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 99.06
KOG0287 442 consensus Postreplication repair protein RAD18 [Re 99.05
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 98.99
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 98.93
KOG2177 386 consensus Predicted E3 ubiquitin ligase [Posttrans 98.86
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 98.85
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 98.84
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 98.84
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 98.84
PF1463444 zf-RING_5: zinc-RING finger domain 98.82
COG5432 391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 98.77
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 98.76
PHA02929238 N1R/p28-like protein; Provisional 98.72
KOG0823230 consensus Predicted E3 ubiquitin ligase [Posttrans 98.7
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 98.66
PHA02926242 zinc finger-like protein; Provisional 98.56
cd0016245 RING RING-finger (Really Interesting New Gene) dom 98.55
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 98.36
KOG2164 513 consensus Predicted E3 ubiquitin ligase [Posttrans 98.27
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 98.25
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 98.19
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 98.17
KOG4185296 consensus Predicted E3 ubiquitin ligase [Posttrans 98.11
KOG0311 381 consensus Predicted E3 ubiquitin ligase [Posttrans 98.01
TIGR00570309 cdk7 CDK-activating kinase assembly factor MAT1. A 98.01
KOG4367 699 consensus Predicted Zn-finger protein [Function un 97.96
COG5243491 HRD1 HRD ubiquitin ligase complex, ER membrane com 97.96
KOG0802543 consensus E3 ubiquitin ligase [Posttranslational m 97.93
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 97.89
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 97.85
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 97.81
KOG4159 398 consensus Predicted E3 ubiquitin ligase [Posttrans 97.79
KOG2660 331 consensus Locus-specific chromosome binding protei 97.74
KOG0824 324 consensus Predicted E3 ubiquitin ligase [Posttrans 97.71
PF1179370 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. 97.52
KOG0804 493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 97.49
COG5152259 Uncharacterized conserved protein, contains RING a 97.36
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 97.34
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 97.32
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 97.31
COG5222427 Uncharacterized conserved protein, contains RING Z 97.14
KOG4265349 consensus Predicted E3 ubiquitin ligase [Posttrans 96.93
KOG1039344 consensus Predicted E3 ubiquitin ligase [Posttrans 96.89
KOG3161 861 consensus Predicted E3 ubiquitin ligase [Posttrans 96.79
KOG1645 463 consensus RING-finger-containing E3 ubiquitin liga 96.79
KOG0297 391 consensus TNF receptor-associated factor [Signal t 96.73
KOG0825 1134 consensus PHD Zn-finger protein [General function 96.64
KOG1734328 consensus Predicted RING-containing E3 ubiquitin l 96.63
KOG1002791 consensus Nucleotide excision repair protein RAD16 96.62
KOG1785563 consensus Tyrosine kinase negative regulator CBL [ 96.41
COG519488 APC11 Component of SCF ubiquitin ligase and anapha 96.31
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 96.3
KOG0827 465 consensus Predicted E3 ubiquitin ligase [Posttrans 96.19
COG52191525 Uncharacterized conserved protein, contains RING Z 96.17
smart0074449 RINGv The RING-variant domain is a C4HC3 zinc-fing 95.99
KOG3039303 consensus Uncharacterized conserved protein [Funct 95.71
KOG149384 consensus Anaphase-promoting complex (APC), subuni 95.61
KOG4692489 consensus Predicted E3 ubiquitin ligase [Posttrans 95.48
COG5236 493 Uncharacterized conserved protein, contains RING Z 95.27
PF1444755 Prok-RING_4: Prokaryotic RING finger family 4 95.23
COG5175 480 MOT2 Transcriptional repressor [Transcription] 95.13
KOG4275350 consensus Predicted E3 ubiquitin ligase [Posttrans 95.07
KOG3002299 consensus Zn finger protein [General function pred 95.01
PF05290140 Baculo_IE-1: Baculovirus immediate-early protein ( 94.83
KOG1571355 consensus Predicted E3 ubiquitin ligase [Posttrans 94.71
KOG2817394 consensus Predicted E3 ubiquitin ligase [Posttrans 94.65
PF1457048 zf-RING_4: RING/Ubox like zinc-binding domain; PDB 94.61
PF04641260 Rtf2: Rtf2 RING-finger 94.47
KOG3970299 consensus Predicted E3 ubiquitin ligase [Posttrans 94.15
KOG3800300 consensus Predicted E3 ubiquitin ligase containing 94.15
KOG1814445 consensus Predicted E3 ubiquitin ligase [Posttrans 94.04
KOG1941518 consensus Acetylcholine receptor-associated protei 93.88
PF07800162 DUF1644: Protein of unknown function (DUF1644); In 93.59
KOG0828636 consensus Predicted E3 ubiquitin ligase [Posttrans 93.49
KOG4362 684 consensus Transcriptional regulator BRCA1 [Replica 92.54
KOG0826357 consensus Predicted E3 ubiquitin ligase involved i 92.48
KOG1001674 consensus Helicase-like transcription factor HLTF/ 92.33
PHA03096284 p28-like protein; Provisional 92.32
PF0385450 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc 91.38
COG5109396 Uncharacterized conserved protein, contains RING Z 91.25
KOG4739233 consensus Uncharacterized protein involved in syna 90.87
PF10367109 Vps39_2: Vacuolar sorting protein 39 domain 2; Int 90.44
KOG2114933 consensus Vacuolar assembly/sorting protein PEP5/V 89.7
KOG4185296 consensus Predicted E3 ubiquitin ligase [Posttrans 88.78
KOG2930114 consensus SCF ubiquitin ligase, Rbx1 component [Po 88.22
KOG1812384 consensus Predicted E3 ubiquitin ligase [Posttrans 88.11
KOG1940276 consensus Zn-finger protein [General function pred 87.7
KOG2932389 consensus E3 ubiquitin ligase involved in ubiquiti 86.98
PF05883134 Baculo_RING: Baculovirus U-box/Ring-like domain; I 85.85
KOG02981394 consensus DEAD box-containing helicase-like transc 85.49
KOG2789 482 consensus Putative Zn-finger protein [General func 82.71
PHA02825162 LAP/PHD finger-like protein; Provisional 81.75
KOG3268234 consensus Predicted E3 ubiquitin ligase [Posttrans 81.66
KOG14283738 consensus Inhibitor of type V adenylyl cyclases/Ne 81.59
PF0289150 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 80.81
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information 
Probab=99.21  E-value=9.5e-11  Score=101.43  Aligned_cols=67  Identities=21%  Similarity=0.343  Sum_probs=47.2

Q ss_pred             ccccCCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCC---CCCCCCccccccCCcccc
Q 024340           35 SLNNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTL---PFQLPFFITCPWCNMVSL  105 (269)
Q Consensus        35 s~~~~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~---~~~~~~~i~CP~CR~~~~  105 (269)
                      ....+..+.++|+||++.+.+    |++++|||.||..||.+|..........   .........||.||..+.
T Consensus        10 ~~~~~~~~~~~CpICld~~~d----PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is   79 (193)
T PLN03208         10 TTLVDSGGDFDCNICLDQVRD----PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS   79 (193)
T ss_pred             ceeccCCCccCCccCCCcCCC----cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence            334455678999999999999    9999999999999999985432211000   001123458999998764

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>KOG4367 consensus Predicted Zn-finger protein [Function unknown] Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4 Back     alignment and domain information
>COG5175 MOT2 Transcriptional repressor [Transcription] Back     alignment and domain information
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3002 consensus Zn finger protein [General function prediction only] Back     alignment and domain information
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0 Back     alignment and domain information
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function Back     alignment and domain information
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PHA03096 p28-like protein; Provisional Back     alignment and domain information
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1940 consensus Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>KOG2789 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PHA02825 LAP/PHD finger-like protein; Provisional Back     alignment and domain information
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query269
2ct2_A88 Solution Structure Of The Ring Domain Of The Tripar 2e-05
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite Motif Protein 32 Length = 88 Back     alignment and structure 
Iteration: 1

 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 42  EGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCN 101
           E LECPIC ESF   +  P +L CGHT+C+ C+  L  + I            + CP+C+
Sbjct: 14  EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSIN----------GVRCPFCS 63
Query: 102 MVS 104
            ++
Sbjct: 64  KIT 66

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query269
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 1e-19
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 3e-07
4epo_C149 E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 4e-07
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 7e-06
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 1e-05
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 1e-05
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 2e-05
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 2e-05
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 3e-05
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 7e-05
1z6u_A150 NP95-like ring finger protein isoform B; structura 2e-04
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 2e-04
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 2e-04
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 2e-04
2ecm_A55 Ring finger and CHY zinc finger domain- containing 3e-04
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 4e-04
2ecw_A85 Tripartite motif-containing protein 30; metal bind 4e-04
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 4e-04
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88 Back     alignment and structure
 Score = 80.1 bits (198), Expect = 1e-19
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 14/99 (14%)

Query: 30  SDDDASLNNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPF 89
           S   +   ++  E LECPIC ESF   +  P +L CGHT+C+ C+  L  + I       
Sbjct: 2   SSGSSGNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSIN------ 55

Query: 90  QLPFFITCPWCNMVSLRLICKGNLKFPQKNYYLLWMVES 128
                + CP+C+    ++    +L     N  +L    S
Sbjct: 56  ----GVRCPFCS----KITRITSLTQLTDNLTVLKSGPS 86
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78 Back     alignment and structure
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149 Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56 Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133 Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124 Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115 Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150 Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71 Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64 Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55 Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68 Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85 Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query269
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 99.54
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 99.5
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 99.49
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 99.49
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 99.47
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 99.46
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 99.43
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 99.4
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 99.4
2ecw_A85 Tripartite motif-containing protein 30; metal bind 99.39
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 99.37
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 99.36
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 99.36
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 99.36
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 99.35
1z6u_A150 NP95-like ring finger protein isoform B; structura 99.34
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 99.33
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 99.33
2ysl_A73 Tripartite motif-containing protein 31; ring-type 99.33
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 99.32
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 99.31
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 99.3
2ysj_A63 Tripartite motif-containing protein 31; ring-type 99.3
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 99.28
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 99.28
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 99.28
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 99.28
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 99.25
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 99.25
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 99.24
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 99.23
2f42_A179 STIP1 homology and U-box containing protein 1; cha 99.23
2ect_A78 Ring finger protein 126; metal binding protein, st 99.17
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 99.17
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 99.16
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 99.15
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 99.14
2ecm_A55 Ring finger and CHY zinc finger domain- containing 99.14
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 99.11
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 99.11
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 99.11
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 99.1
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 99.1
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 99.07
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 99.06
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 99.03
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 99.03
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 99.02
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 98.98
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 98.98
4ic3_A74 E3 ubiquitin-protein ligase XIAP; ring domain, zin 98.97
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 98.94
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 98.93
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 98.9
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 98.82
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 98.79
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 98.7
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 98.69
2ea5_A68 Cell growth regulator with ring finger domain prot 98.64
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 98.63
1wim_A94 KIAA0161 protein; ring finger domain, UBCM4-intera 98.62
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 98.62
3dpl_R106 Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST 98.6
3t6p_A345 Baculoviral IAP repeat-containing protein 2; ring, 98.53
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 98.46
2d8s_A80 Cellular modulator of immune recognition; C-MIR, m 98.46
4a0k_B117 E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi 98.39
2ct0_A74 Non-SMC element 1 homolog; ring domain, structural 97.91
3k1l_B381 Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A 97.64
3vk6_A101 E3 ubiquitin-protein ligase hakai; HYB, phosphotyr 97.6
1vyx_A60 ORF K3, K3RING; zinc-binding protein, ring domain, 97.4
2jun_A101 Midline-1; B-BOX, TRIM, ring finger, alternative s 96.18
2ko5_A99 Ring finger protein Z; lassa fever virus-Z, negati 95.74
3m62_A968 Ubiquitin conjugation factor E4; armadillo-like re 95.59
3nw0_A238 Non-structural maintenance of chromosomes element 94.45
3i2d_A371 E3 SUMO-protein ligase SIZ1; signal transduction, 86.88
2cs3_A93 Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s 86.6
4fo9_A360 E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom 82.15
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
Probab=99.54  E-value=9.7e-15  Score=110.37  Aligned_cols=77  Identities=21%  Similarity=0.408  Sum_probs=62.9

Q ss_pred             ccCCCCccccccccccccccCCCcEEec-CCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCCCC
Q 024340           37 NNSREEGLECPICWESFNVVENLPYVLW-CGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKF  115 (269)
Q Consensus        37 ~~~lee~l~CpICl~~f~~~~~~P~~L~-CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~~~  115 (269)
                      .+.+++.++|+||++.|.+    |++++ |||+||..||.+|+....           ...||.||..+.      ....
T Consensus         7 ~~~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~-----------~~~CP~Cr~~~~------~~~~   65 (92)
T 3ztg_A            7 DDPIPDELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLESD-----------EHTCPTCHQNDV------SPDA   65 (92)
T ss_dssp             CCCCCTTTEETTTTEECSS----CEECTTTCCEECHHHHHHHHHHCT-----------TCCCTTTCCSSC------CTTS
T ss_pred             cccCCcCCCCCCCChhhcC----ceECCCCCCHHHHHHHHHHHHhcC-----------CCcCcCCCCcCC------Cccc
Confidence            4567789999999999999    99999 999999999999854322           126999998752      1457


Q ss_pred             CcchHHHHHHHHHHhcccC
Q 024340          116 PQKNYYLLWMVESMNGDRS  134 (269)
Q Consensus       116 ~~~N~~l~~lve~~~~~~~  134 (269)
                      +..|..+.++++.++....
T Consensus        66 ~~~n~~l~~~i~~~~~~~~   84 (92)
T 3ztg_A           66 LIANKFLRQAVNNFKNETG   84 (92)
T ss_dssp             CEECHHHHHHHHHHHHHHT
T ss_pred             cCcCHHHHHHHHHHHHHHh
Confidence            8899999999999887653
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Back     alignment and structure
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Back     alignment and structure
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Back     alignment and structure
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Back     alignment and structure
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Back     alignment and structure
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Back     alignment and structure
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Back     alignment and structure
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Back     alignment and structure
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} Back     alignment and structure
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Back     alignment and structure
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Back     alignment and structure
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3 Back     alignment and structure
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 269
d1iyma_55 g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati 4e-06
d1ur6b_52 g.44.1.1 (B:) Not-4 N-terminal RING finger domain 2e-05
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 4e-05
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 5e-05
d1chca_68 g.44.1.1 (A:) Immediate early protein, IEEHV {Equi 3e-04
d1jm7b_97 g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie 5e-04
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 0.001
d1wima_94 g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016 0.002
d1wgma_98 g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu 0.002
d1g25a_65 g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi 0.003
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55 Back     information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 41.0 bits (96), Expect = 4e-06
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 41 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCV 74
          ++G+EC +C       E   ++  CGH     CV
Sbjct: 3  DDGVECAVCLAELEDGEEARFLPRCGHGFHAECV 36
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94 Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query269
d2c2la280 STIP1 homology and U box-containing protein 1, STU 99.53
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 99.5
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 99.46
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 99.41
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 99.36
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 99.33
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 99.19
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 99.18
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 99.16
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 99.14
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 99.12
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 99.11
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 99.1
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 98.72
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 98.59
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 98.4
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 98.21
d2cs3a180 Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [ 82.98
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=4.2e-15  Score=108.78  Aligned_cols=72  Identities=13%  Similarity=0.018  Sum_probs=61.0

Q ss_pred             CCCCccccccccccccccCCCcEEecCCCcchHhhHHHHHHhhccCCCCCCCCCCccccccCCcccccccccCCCCCCcc
Q 024340           39 SREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQK  118 (269)
Q Consensus        39 ~lee~l~CpICl~~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~~~~~~~~i~CP~CR~~~~~~~~~~~~~~~~~  118 (269)
                      +..+++.||||+++|.+    |++++|||+||+.||.+|+.....            .||.||..+.       ...+..
T Consensus         3 eiP~~l~CpIc~~l~~d----Pv~~~cGhtfc~~ci~~~l~~~~~------------~cP~c~~~l~-------~~~l~p   59 (80)
T d2c2la2           3 DIPDYLCGKISFELMRE----PCITPSGITYDRKDIEEHLQRVGH------------FNPVTRSPLT-------QEQLIP   59 (80)
T ss_dssp             CCCSTTBCTTTCSBCSS----EEECSSCCEEETTHHHHHHHHTCS------------SCTTTCCCCC-------GGGCEE
T ss_pred             CCCccccCcCcCchhhh----hcccCCcCeecHHHHHHHHhcCCc------------cCCCcccccc-------cccccc
Confidence            44689999999999999    999999999999999998654321            5999999865       567889


Q ss_pred             hHHHHHHHHHHhccc
Q 024340          119 NYYLLWMVESMNGDR  133 (269)
Q Consensus       119 N~~l~~lve~~~~~~  133 (269)
                      |..++++++++.++.
T Consensus        60 N~~L~~~I~~~l~~~   74 (80)
T d2c2la2          60 NLAMKEVIDAFISEN   74 (80)
T ss_dssp             CHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHC
Confidence            999999999987544
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure