Citrus Sinensis ID: 024380

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
MIFLLLLSVFLRGASSSILSEDTPISFSFPSFAKDSCDNKTLICYGAIESSGALSITPGPPPNLPIRKVGRVLYGKPLSLQRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGVGEYLGLQSSPGDKFPPLAVELDTCLNKNLNDPDDNHIGIDINGIESNPVNSLLDVDLKSGRAIQVRIYYNPDFGQLSIYAAYSGETLVKVIEKPINLSDIIPTPVYVGFTAATGDFLESHEVINWTFNSFPVPPSLKEKNLVMPI
cHHHHHHHHHHHHHHcccccccccEEEEccccccccccccEEEEcEEEcccccEEEccccccccccccEEEEEEcccEEEEccccccEEEEEEEEEcccccccccEEEEEEEEccccccccccccccccccccccccccEEEEEEccccccccccccccEEEEcccccccccccccccccccccEEEEEEEEEccccEEEEEEEEcccccEEEEEEEEEccccccccEEEEEEccccccccEEEEEEEEEEEcccccccccccccccc
cHHHHHHHHHHHHHHHHHHccccccEEEEccccccccccEEEcccEEEccccEEEEEccccccccEEEEcEEEccccEEEEcccccEEEEEEEEEEEEcccccccEEEEEEEcccccccccccccEEEEEcccccccEEEEEEEEccccHHHccccccEEEEEEcccccEccccccccEcccccEEEEEEEEccccEEEEEEEcccccccccEEEEEEccHHcccccEEEEEEccccccccEEEEEEEEEccccccccccHHHccccc
MIFLLLLSVFLRgasssilsedtpisfsfpsfakdscdnktlicygaiessgalsitpgpppnlpirkvgrvlygkplslqrsfidtTITIKISRhqnytdragdgmtfifasdkngpsakgvgeylglqsspgdkfpplAVELDTClnknlndpddnhigidingiesnpvnslldvdlksgraIQVRiyynpdfgqlSIYAAYSGETLVKVIEkpinlsdiiptpvyvgftaatgdflesHEVINWtfnsfpvppslkeknlvmpi
MIFLLLLSVFLRGASSSILSEDTPISFSFPSFAKDSCDNKTLICYGAIESSGALSITPGPPPNLPIRKVGRVLYGKPLSLQRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGVGEYLGLQSSPGDKFPPLAVELDTCLNKNLNDPDDNHIGIDINGIESNPVNSLLDVDLKSGRAIQVRIYYNPDFGQLSIYAAYSGETLVKVIEKPINLSDIIPTPVYVGFTAATGDFLESHEVINWTFnsfpvppslkeknlvmpi
MIFLLLLSVFLRGASSSILSEDTPISFSFPSFAKDSCDNKTLICYGAIESSGALSITPGPPPNLPIRKVGRVLYGKPLSLQRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGVGEYLGLQSSPGDKFPPLAVELDTCLNKNLndpddnhigidingiESNPVNSLLDVDLKSGRAIQVRIYYNPDFGQLSIYAAYSGETLVKVIEKPINLSDIIPTPVYVGFTAATGDFLESHEVINWTFNSFPVPPSLKEKNLVMPI
*IFLLLLSVFLRGASSSILSEDTPISFSFPSFAKDSCDNKTLICYGAIESSGALSIT*****NLPIRKVGRVLYGKPLSLQRSFIDTTITIKISRHQNYTDRAGDGMTFIFA**************************PLAVELDTCLNKNLNDPDDNHIGIDINGIESNPVNSLLDVDLKSGRAIQVRIYYNPDFGQLSIYAAYSGETLVKVIEKPINLSDIIPTPVYVGFTAATGDFLESHEVINWTFNSFPV*************
MIFLLLLSVFLRGASSSILSEDTPISFSFPSFAKDSCDNKTLICYGAIESSGALSITPGPPPNLPIRKVGRVLYGKPLSLQRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDK************GLQSSPGDKFPPLAVELDTCLNKNLNDPDDNHIGIDINGIESNPVNSLLDVDLKSGRAIQVRIYYNPDFGQLSIYAAYSGETLVKVIEKPINLSDIIPTPVYVGFTAATGDFLESHEVINWTFNSFPVP*****KNLVMP*
MIFLLLLSVFLRGASSSILSEDTPISFSFPSFAKDSCDNKTLICYGAIESSGALSITPGPPPNLPIRKVGRVLYGKPLSLQRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGVGEYLGLQSSPGDKFPPLAVELDTCLNKNLNDPDDNHIGIDINGIESNPVNSLLDVDLKSGRAIQVRIYYNPDFGQLSIYAAYSGETLVKVIEKPINLSDIIPTPVYVGFTAATGDFLESHEVINWTFNSFPVPPSLKEKNLVMPI
MIFLLLLSVFLRGASSSILSEDTPISFSFPSFAKDSCDNKTLICYGAIESSGALSITPGPPPNLPIRKVGRVLYGKPLSLQRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGVGEYLGLQSSPGDKFPPLAVELDTCLNKNLNDPDDNHIGIDINGIESNPVNSLLDVDLKSGRAIQVRIYYNPDFGQLSIYAAYSGETLVKVIEKPINLSDIIPTPVYVGFTAATGDFLESHEVINWTFNSFPVPPSLKEKNLVMPI
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIFLLLLSVFLRGASSSILSEDTPISFSFPSFAKDSCDNKTLICYGAIESSGALSITPGPPPNLPIRKVGRVLYGKPLSLQRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGVGEYLGLQSSPGDKFPPLAVELDTCLNKNLNDPDDNHIGIDINGIESNPVNSLLDVDLKSGRAIQVRIYYNPDFGQLSIYAAYSGETLVKVIEKPINLSDIIPTPVYVGFTAATGDFLESHEVINWTFNSFPVPPSLKEKNLVMPI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query268 2.2.26 [Sep-21-2011]
Q39529290 Agglutinin-2 OS=Cladrasti N/A no 0.880 0.813 0.315 4e-18
Q9FG33 652 Probable L-type lectin-do yes no 0.925 0.380 0.276 9e-18
P42088240 Lectin OS=Leucomphalos mi N/A no 0.809 0.904 0.320 9e-18
P93535292 Seed lectin OS=Styphnolob N/A no 0.861 0.791 0.309 4e-17
P29257248 2-acetamido-2-deoxy-D-gal N/A no 0.813 0.879 0.330 8e-17
Q9FHG4 681 Probable L-type lectin-do no no 0.731 0.287 0.321 1e-16
P22970244 Anti-H(O) lectin 1 OS=Cyt N/A no 0.824 0.905 0.283 2e-16
Q9M2S4 684 L-type lectin-domain cont no no 0.802 0.314 0.299 5e-16
P83410239 Lectin OS=Erythrina crist N/A no 0.824 0.924 0.322 7e-16
O81292 674 L-type lectin-domain cont no no 0.824 0.327 0.293 1e-15
>sp|Q39529|LEC2_CLAKE Agglutinin-2 OS=Cladrastis kentukea PE=1 SV=1 Back     alignment and function desciption
 Score = 92.0 bits (227), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/269 (31%), Positives = 128/269 (47%), Gaps = 33/269 (12%)

Query: 1   MIFLLLLSVFLRGASSSILSEDTPISFSFPSFAKDSCDNKTLICYG--AIESSG-ALSIT 57
           + F+ L  + L   +SS       +SF+F +F  D  D   LI  G   I S G +L +T
Sbjct: 20  LAFITLFLMLLNRVNSS-----DSLSFTFDNFRPDQRD---LILQGDAKISSGGDSLQLT 71

Query: 58  PGPPPNLPIR-KVGRVLYGKPLSLQRSFID------TTITIKISRHQNYTDRAGDGMTFI 110
                  P+R  VGR LY  PL L  S  +      TT T  +S     T+  GDG+ F 
Sbjct: 72  KTDTSGKPVRGSVGRALYYTPLHLWDSSTNRLASFQTTFTFVLSSP---TNNPGDGIAFF 128

Query: 111 FASDKNGPSAKGVGEYLGLQSSPGDKF-----PPLAVELDTCLNKNLNDPDDNHIGIDIN 165
            A  +        G  LGL  SP +         +AVE DT +N N  DP   HIGID+N
Sbjct: 129 IAPPETTIPPGSSGGLLGL-FSPDNALNNSLNQIVAVEFDTFVNNNW-DPSHRHIGIDVN 186

Query: 166 GIESNPVNSLLDVDLKSGRAIQVRIYYNPDFGQLSIYAAYSGETLVK--VIEKPINLSDI 223
            I+S+     +    ++G     +I YN D  +LS+ ++Y      +   +   ++L   
Sbjct: 187 TIKSSAT---VRWQRENGSLATAQISYNSDTKKLSVVSSYPNTQANEDYTVSYDVDLKTE 243

Query: 224 IPTPVYVGFTAATGDFLESHEVINWTFNS 252
           +P  V VGF+ +TG ++++H +++WTFNS
Sbjct: 244 LPEWVRVGFSGSTGGYVQNHNILSWTFNS 272
Bark lectins are storage proteins that probably maintain stocks of nitrogen during dormant period. Self-aggregatable molecules that can bind their own carbohydrate side chains. They could also play a role in the plant's defense against phytophagous invertebrates or herbivorous higher animals.
Cladrastis kentukea (taxid: 38412)
>sp|Q9FG33|LRKS5_ARATH Probable L-type lectin-domain containing receptor kinase S.5 OS=Arabidopsis thaliana GN=LECRKS5 PE=2 SV=1 Back     alignment and function description
>sp|P42088|LEC_LEUMI Lectin OS=Leucomphalos mildbraedii PE=1 SV=1 Back     alignment and function description
>sp|P93535|LECS_STYJP Seed lectin OS=Styphnolobium japonicum PE=2 SV=1 Back     alignment and function description
>sp|P29257|LEC2_CYTSC 2-acetamido-2-deoxy-D-galactose-binding seed lectin 2 OS=Cytisus scoparius PE=1 SV=1 Back     alignment and function description
>sp|Q9FHG4|LRKS7_ARATH Probable L-type lectin-domain containing receptor kinase S.7 OS=Arabidopsis thaliana GN=LECRKS7 PE=2 SV=1 Back     alignment and function description
>sp|P22970|LEC1_CYTSE Anti-H(O) lectin 1 OS=Cytisus sessilifolius PE=1 SV=2 Back     alignment and function description
>sp|Q9M2S4|LRKS4_ARATH L-type lectin-domain containing receptor kinase S.4 OS=Arabidopsis thaliana GN=LECRKS4 PE=1 SV=1 Back     alignment and function description
>sp|P83410|LEC_ERYCG Lectin OS=Erythrina crista-galli PE=1 SV=1 Back     alignment and function description
>sp|O81292|LRK43_ARATH L-type lectin-domain containing receptor kinase IV.3 OS=Arabidopsis thaliana GN=LECRK43 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
11596188268 lectin-related protein precursor [Citrus 1.0 1.0 1.0 1e-151
359476128 661 PREDICTED: probable L-type lectin-domain 0.940 0.381 0.413 2e-39
255548946 584 conserved hypothetical protein [Ricinus 0.813 0.373 0.386 5e-31
356553507 716 PREDICTED: probable L-type lectin-domain 0.798 0.298 0.311 6e-22
356565399 645 PREDICTED: probable L-type lectin-domain 0.798 0.331 0.304 8e-20
296082025 569 unnamed protein product [Vitis vinifera] 0.477 0.224 0.436 6e-19
326498453 684 predicted protein [Hordeum vulgare subsp 0.906 0.355 0.297 9e-19
224114497 663 predicted protein [Populus trichocarpa] 0.910 0.368 0.314 3e-18
224056469 664 predicted protein [Populus trichocarpa] 0.828 0.334 0.327 6e-18
225441463 654 PREDICTED: probable L-type lectin-domain 0.902 0.370 0.317 6e-18
>gi|11596188|gb|AAG38522.1|AF283537_1 lectin-related protein precursor [Citrus x paradisi] Back     alignment and taxonomy information
 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 268/268 (100%), Positives = 268/268 (100%)

Query: 1   MIFLLLLSVFLRGASSSILSEDTPISFSFPSFAKDSCDNKTLICYGAIESSGALSITPGP 60
           MIFLLLLSVFLRGASSSILSEDTPISFSFPSFAKDSCDNKTLICYGAIESSGALSITPGP
Sbjct: 1   MIFLLLLSVFLRGASSSILSEDTPISFSFPSFAKDSCDNKTLICYGAIESSGALSITPGP 60

Query: 61  PPNLPIRKVGRVLYGKPLSLQRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDKNGPSA 120
           PPNLPIRKVGRVLYGKPLSLQRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDKNGPSA
Sbjct: 61  PPNLPIRKVGRVLYGKPLSLQRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDKNGPSA 120

Query: 121 KGVGEYLGLQSSPGDKFPPLAVELDTCLNKNLNDPDDNHIGIDINGIESNPVNSLLDVDL 180
           KGVGEYLGLQSSPGDKFPPLAVELDTCLNKNLNDPDDNHIGIDINGIESNPVNSLLDVDL
Sbjct: 121 KGVGEYLGLQSSPGDKFPPLAVELDTCLNKNLNDPDDNHIGIDINGIESNPVNSLLDVDL 180

Query: 181 KSGRAIQVRIYYNPDFGQLSIYAAYSGETLVKVIEKPINLSDIIPTPVYVGFTAATGDFL 240
           KSGRAIQVRIYYNPDFGQLSIYAAYSGETLVKVIEKPINLSDIIPTPVYVGFTAATGDFL
Sbjct: 181 KSGRAIQVRIYYNPDFGQLSIYAAYSGETLVKVIEKPINLSDIIPTPVYVGFTAATGDFL 240

Query: 241 ESHEVINWTFNSFPVPPSLKEKNLVMPI 268
           ESHEVINWTFNSFPVPPSLKEKNLVMPI
Sbjct: 241 ESHEVINWTFNSFPVPPSLKEKNLVMPI 268

Source: Citrus x paradisi

Species: Citrus x paradisi

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359476128|ref|XP_002282629.2| PREDICTED: probable L-type lectin-domain containing receptor kinase S.7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255548946|ref|XP_002515529.1| conserved hypothetical protein [Ricinus communis] gi|223545473|gb|EEF46978.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356553507|ref|XP_003545097.1| PREDICTED: probable L-type lectin-domain containing receptor kinase S.7-like [Glycine max] Back     alignment and taxonomy information
>gi|356565399|ref|XP_003550928.1| PREDICTED: probable L-type lectin-domain containing receptor kinase S.7-like [Glycine max] Back     alignment and taxonomy information
>gi|296082025|emb|CBI21030.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|326498453|dbj|BAJ98654.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|224114497|ref|XP_002316778.1| predicted protein [Populus trichocarpa] gi|222859843|gb|EEE97390.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056469|ref|XP_002298872.1| predicted protein [Populus trichocarpa] gi|222846130|gb|EEE83677.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225441463|ref|XP_002279820.1| PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
UNIPROTKB|P42088240 P42088 "Lectin" [Leucomphalos 0.809 0.904 0.287 3e-14
TAIR|locus:2170224 652 AT5G06740 [Arabidopsis thalian 0.813 0.334 0.276 8.2e-14
TAIR|locus:2143528 711 AT5G03140 [Arabidopsis thalian 0.917 0.345 0.251 1.1e-11
TAIR|locus:2162212 681 AT5G55830 [Arabidopsis thalian 0.873 0.343 0.281 4.2e-11
TAIR|locus:2099941 684 AT3G55550 [Arabidopsis thalian 0.869 0.340 0.265 8.3e-11
UNIPROTKB|P02870275 P02870 "Lectin" [Lens culinari 0.869 0.847 0.273 4.1e-09
TAIR|locus:2138381 686 AT4G04960 [Arabidopsis thalian 0.902 0.352 0.267 2.9e-08
TAIR|locus:2097613 693 AT3G08870 [Arabidopsis thalian 0.276 0.106 0.373 1.5e-07
UNIPROTKB|Q70DJ5280 Q70DJ5 "Alpha-methyl-mannoside 0.820 0.785 0.247 2.4e-07
TAIR|locus:2083986 715 AT3G53380 [Arabidopsis thalian 0.865 0.324 0.247 8.1e-07
UNIPROTKB|P42088 P42088 "Lectin" [Leucomphalos mildbraedii (taxid:28956)] Back     alignment and assigned GO terms
 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 69/240 (28%), Positives = 108/240 (45%)

Query:    25 ISFSFPSFAKDSCDNKTLICYG--AIESSGALSITPGPPPNLPIR-KVGRVLYGKPLSLQ 81
             + F+F  F     D   LI  G  ++ S+ AL +T       P    VGR LY  P+ L 
Sbjct:     4 VCFTFTDFESGQQD---LIFQGDASVGSNKALQLTKVDSKGNPQGGSVGRALYTAPIRLW 60

Query:    82 RSF-----IDTTITIKISRHQNYTDRAGDGMTFIFAS-DKNGPSAKGVGEYLGL---QSS 132
             +S       +TT T  IS+  + T  A   +TF  AS D   PS  G G  LGL    ++
Sbjct:    61 QSSSLVASFETTFTFSISQGSS-TPAAA--LTFFIASPDTKIPSGSG-GRLLGLFGSSNN 116

Query:   133 PGDKFPPLAVELDTCLNKNLXXXXXXXXXXXXXXXESNPVNSLLDVDLKSGRAIQVRIYY 192
              G     +AVE DT  N ++                S   +     D ++G+     I Y
Sbjct:   117 AGSDNGVVAVEFDTYPNTDIGDPNYRHIGIDVNSIRSKAASKW---DWQNGKTATAHISY 173

Query:   193 NPDFGQLSIYAAYSGETLVKVIEKPINLSDIIPTPVYVGFTAATGDFLESHEVINWTFNS 252
             N    +LS+ ++Y   + V V+   + L+++ P  V VGF+A TG + +++ ++ W+F S
Sbjct:   174 NSASKRLSVVSSYPNSSPV-VVSFDVELNNVGPPDVRVGFSATTGQYTQTNNILAWSFRS 232
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0030246 "carbohydrate binding" evidence=IDA
TAIR|locus:2170224 AT5G06740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143528 AT5G03140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162212 AT5G55830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099941 AT3G55550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P02870 P02870 "Lectin" [Lens culinaris (taxid:3864)] Back     alignment and assigned GO terms
TAIR|locus:2138381 AT4G04960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097613 AT3G08870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q70DJ5 Q70DJ5 "Alpha-methyl-mannoside-specific lectin" [Arachis hypogaea (taxid:3818)] Back     alignment and assigned GO terms
TAIR|locus:2083986 AT3G53380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00032635001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (599 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
pfam00139231 pfam00139, Lectin_legB, Legume lectin domain 7e-69
cd06899236 cd06899, lectin_legume_LecRK_Arcelin_ConA, legume 6e-62
cd01951223 cd01951, lectin_L-type, legume lectins 8e-37
>gnl|CDD|215744 pfam00139, Lectin_legB, Legume lectin domain Back     alignment and domain information 
 Score =  212 bits (541), Expect = 7e-69
 Identities = 85/241 (35%), Positives = 121/241 (50%), Gaps = 22/241 (9%)

Query: 23  TPISFSFPSFAKDSCDNKTLICYGAIESSGALSITPGPPPNLPIRKVGRVLYGKPLSL-- 80
           + +SF++  F+  S  N TL     +  +G L +T     N+     GR LY KP+ L  
Sbjct: 1   STVSFNYNGFSNVS--NLTLQGDATVLPNGLLQLT-----NVTNNSAGRALYSKPIRLWD 53

Query: 81  -----QRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGVGEYLGLQSSPGD 135
                  SF  T+    I      +   GDG+ F  A     P A   G YLGL +S  +
Sbjct: 54  SSTGKVASF-STSFVFAIKNI-PKSTNGGDGLAFFLAPSGTQPGASS-GGYLGLFNSSNN 110

Query: 136 KFP---PLAVELDTCLNKNLNDPDDNHIGIDINGIESNPVNSLL--DVDLKSGRAIQVRI 190
                  +AVE DT LN   ND DDNH+GID+N I S    S     +DL SG+ IQV I
Sbjct: 111 GNSSNHIVAVEFDTFLNPEFNDIDDNHVGIDVNSIISVASESASFVPLDLNSGKPIQVWI 170

Query: 191 YYNPDFGQLSIYAAYSGETLVKVIEKPINLSDIIPTPVYVGFTAATGDFLESHEVINWTF 250
            Y+    +LS+  AY  +    ++   ++LS ++P  VYVGF+A+TG   ESH V++W+F
Sbjct: 171 DYDGSSKRLSVTLAYPNKPKRPLLSASVDLSTVLPEWVYVGFSASTGGATESHYVLSWSF 230

Query: 251 N 251
           +
Sbjct: 231 S 231

Length = 231
>gnl|CDD|173887 cd06899, lectin_legume_LecRK_Arcelin_ConA, legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor Back     alignment and domain information
>gnl|CDD|173886 cd01951, lectin_L-type, legume lectins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 268
cd06899236 lectin_legume_LecRK_Arcelin_ConA legume lectins, l 100.0
PF00139236 Lectin_legB: Legume lectin domain; InterPro: IPR00 100.0
cd01951223 lectin_L-type legume lectins. The L-type (legume-t 100.0
cd07308218 lectin_leg-like legume-like lectins: ERGIC-53, ERG 99.95
cd06902225 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 tran 99.92
cd06901248 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembr 99.91
cd06903215 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmem 99.83
PF03388229 Lectin_leg-like: Legume-like lectin family; InterP 99.83
KOG3838 497 consensus Mannose lectin ERGIC-53, involved in gly 99.78
KOG3839351 consensus Lectin VIP36, involved in the transport 99.65
cd06900255 lectin_VcfQ VcfQ bacterial pilus biogenesis protei 99.13
cd00110151 LamG Laminin G domain; Laminin G-like domains are 86.86
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=3.1e-54  Score=382.71  Aligned_cols=216  Identities=35%  Similarity=0.575  Sum_probs=190.8

Q ss_pred             eeEEcCCCCCCCCCccccccccCeEEecceEeCCC-CC--CCCC--CCceEEEEeccceeccc------CCeEEEEEEEE
Q 024380           25 ISFSFPSFAKDSCDNKTLICYGAIESSGALSITPG-PP--PNLP--IRKVGRVLYGKPLSLQR------SFIDTTITIKI   93 (268)
Q Consensus        25 ~~F~f~~F~~~~~~~~~~~~~~~l~l~G~A~~~~~-~i--T~~~--~~~~G~~~y~~Pi~l~~------~sFst~F~F~I   93 (268)
                      ++|+|++|..+.         ++|.|+|+|.+..+ .+  |++.  ++++|||||++||++|+      ++|+|+|+|+|
T Consensus         1 ~~f~f~~f~~~~---------~~l~l~G~A~~~~~~~i~LT~~~~~~~~~G~v~y~~pi~l~~~~~~~~~sFst~F~F~i   71 (236)
T cd06899           1 LSFNFNGFSSDQ---------SNLTLQGDATISSNGALQLTNDTSPASSVGRALYSKPVRLWDSTTGKVASFSTSFSFSI   71 (236)
T ss_pred             CceecCCCCCCC---------CCEEEecceEcCCCCeEEecCCCCCCcceEEEEeCCCEEeecCCCCCceeEEEEEEEEE
Confidence            479999998753         78999999999844 45  9888  99999999999999996      69999999999


Q ss_pred             eecccCCCCCCCceEEEEecCCCCCCCCCCCccccCCCC---CCCCCCcEEEEEeccCc-CCCCCCCCCeeEEecCCCcc
Q 024380           94 SRHQNYTDRAGDGMTFIFASDKNGPSAKGVGEYLGLQSS---PGDKFPPLAVELDTCLN-KNLNDPDDNHIGIDINGIES  169 (268)
Q Consensus        94 ~~~~~~~~~~gDGlAF~l~~~~~~~~~~~~Gg~lGl~~~---~~~~~~~vAVEFDT~~N-~~~~Dp~~~HVgI~~ns~~s  169 (268)
                      .+  +....+||||||||+|++ ..+.+..|++|||.+.   +...++.||||||||+| ++ +||+.+||||++|++.+
T Consensus        72 ~~--~~~~~~gdGlAF~i~~~~-~~~~~~~G~~lG~~~~~~~~~~~~~~vAVEFDT~~n~~~-~D~~~nHigIdvn~~~S  147 (236)
T cd06899          72 TP--PNPSLGGDGLAFFLAPTD-SLPPASSGGYLGLFNSSNNGNSSNHIVAVEFDTFQNPEF-GDPDDNHVGIDVNSLVS  147 (236)
T ss_pred             Ec--CCCCCCCCeEEEEEecCC-CCCCCCCcceeeeecCCCCCCcccceEEEEeecccCccc-CCCCCCeEEEEcCCccc
Confidence            98  555689999999999987 3344688999999876   23567899999999999 66 79999999999999988


Q ss_pred             ccccccc--ccccCCCceEEEEEEEecCCcEEEEEEEec--CCCceeEEEEeeeCCCCCCCceEEEEEeecCCcccceEE
Q 024380          170 NPVNSLL--DVDLKSGRAIQVRIYYNPDFGQLSIYAAYS--GETLVKVIEKPINLSDIIPTPVYVGFTAATGDFLESHEV  245 (268)
Q Consensus       170 ~~~~~~~--~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~--~~~~~~~ls~~idL~~~l~~~~yvGFSAsTG~~~~~h~I  245 (268)
                      ..+..+.  .++|.+|+.++|||+|++.+++|+|+|+..  .+|..|++++.+||+.+|+++|||||||+||+..|.|+|
T Consensus       148 ~~~~~~~~~~~~l~~g~~~~v~I~Y~~~~~~L~V~l~~~~~~~~~~~~ls~~vdL~~~l~~~~~vGFSasTG~~~~~h~i  227 (236)
T cd06899         148 VKAGYWDDDGGKLKSGKPMQAWIDYDSSSKRLSVTLAYSGVAKPKKPLLSYPVDLSKVLPEEVYVGFSASTGLLTELHYI  227 (236)
T ss_pred             ceeeccccccccccCCCeEEEEEEEcCCCCEEEEEEEeCCCCCCcCCEEEEeccHHHhCCCceEEEEEeEcCCCcceEEE
Confidence            7766652  345789999999999999999999999984  378899999999999999999999999999999999999


Q ss_pred             EEEEEeeC
Q 024380          246 INWTFNSF  253 (268)
Q Consensus       246 ~sWsF~s~  253 (268)
                      ++|+|++.
T Consensus       228 ~sWsF~s~  235 (236)
T cd06899         228 LSWSFSSN  235 (236)
T ss_pred             EEEEEEcC
Confidence            99999985

This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported Back     alignment and domain information
>cd01951 lectin_L-type legume lectins Back     alignment and domain information
>cd07308 lectin_leg-like legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47 Back     alignment and domain information
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain Back     alignment and domain information
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain Back     alignment and domain information
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain Back     alignment and domain information
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates Back     alignment and domain information
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd06900 lectin_VcfQ VcfQ bacterial pilus biogenesis protein, lectin domain Back     alignment and domain information
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
2fmd_A240 Structural Basis Of Carbohydrate Recognition By Bow 2e-11
1gz9_A239 High-Resolution Crystal Structure Of Erythrina Cris 4e-11
1lte_A239 Structure Of A Legume Lectin With An Ordered N-Link 8e-11
1sfy_A239 Crystal Structure Of Recombinant Erythrina Corallod 2e-10
3n35_A242 Erythrina Corallodendron Lectin Mutant (Y106g) With 3e-10
1fyu_A255 Crystal Structure Of Erythrina Corallodendron Lecti 3e-10
1ax0_A239 Erythrina Corallodendron Lectin In Complex With N-A 4e-10
3usu_A256 Crystal Structure Of Butea Monosperma Seed Lectin L 2e-09
3usu_B242 Crystal Structure Of Butea Monosperma Seed Lectin L 2e-09
1uzy_A242 Erythrina Crystagalli Lectin Length = 242 3e-09
3ipv_B239 Crystal Structure Of Spatholobus Parviflorus Seed L 2e-08
3ujo_A281 Galactose-Specific Seed Lectin From Dolichos Lablab 2e-08
1fat_A252 Phytohemagglutinin-L Length = 252 2e-08
2bqp_A234 The Structure Of The Pea Lectin-D-Glucopyranose Com 2e-08
1fay_A238 Winged Bean Acidic Lectin Complexed With Methyl-Alp 3e-08
1g8w_A233 Improved Structure Of Phytohemagglutinin-L From The 3e-08
3zvx_A261 Structure Of The Lectin From Platypodium Elegans In 4e-08
3ipv_A251 Crystal Structure Of Spatholobus Parviflorus Seed L 7e-08
1bjq_A253 The Dolichos Biflorus Seed Lectin In Complex With A 1e-07
2sba_A253 Soybean Agglutinin Complexed With 2,6-Pentasacchari 1e-07
1n47_A233 Isolectin B4 From Vicia Villosa In Complex With The 3e-07
1qnw_A242 Lectin Ii From Ulex Europaeus Length = 242 3e-07
1ioa_A240 Arcelin-5, A Lectin-Like Defense Protein From Phase 1e-06
1n3o_A252 Pterocarcpus Angolensis Lectin In Complex With Alph 1e-06
1q8o_A252 Pterocartpus Angolensis Lectin Pal In Complex With 2e-06
1wbl_A241 Winged Bean Lectin Complexed With Methyl-Alpha-D-Ga 3e-06
2e7q_A237 Crystal Structure Of Basic Winged Bean Lectin In Co 3e-06
1wbf_A242 Winged Bean Lectin, Saccharide Free Form Length = 2 3e-06
2eig_A234 Lotus Tetragonolobus Seed Lectin (Isoform) Length = 4e-06
2je9_A 239 Crystal Structure Of Recombinant Dioclea Grandiflor 7e-06
1gsl_A243 Lectin (Fourth Isolated From (Griffonia Simplicifol 7e-06
3sh3_A 237 Crystal Structure Of A Pro-Inflammatory Lectin From 8e-06
2jec_A 239 Crystal Structure Of Recombinant Dioclea Grandiflor 1e-05
1dgl_A 237 Lectin From Dioclea Grandiflora Complexed To Triman 1e-05
2gdf_A 237 Crystal Structure Of Dioclea Violacea Seed Lectin L 2e-05
2jdz_A 239 Crystal Structure Of Recombinant Dioclea Guianensis 2e-05
2je7_A 239 Crystal Structure Of Recombinant Dioclea Guianensis 2e-05
2zbj_A 237 Crystal Structure Of Dioclea Rostrata Lectin Length 2e-05
1dbn_A239 Maackia Amurensis Leukoagglutinin (Lectin) With Sia 2e-05
3a0k_A 237 Crystal Structure Of An Antiflamatory Legume Lectin 5e-05
3rrd_A 237 Native Structure Of Dioclea Virgata Lectin Length = 5e-05
1h9w_A 237 Native Dioclea Guianensis Seed Lectin Length = 237 5e-05
1h9p_A 237 Crystal Structure Of Dioclea Guianensis Seed Lectin 6e-05
1mvq_A 236 Cratylia Mollis Lectin (Isoform 1) In Complex With 6e-05
1lul_A253 Db58, A Legume Lectin From Dolichos Biflorus Length 1e-04
3u4x_A 236 Crystal Structure Of A Lectin From Camptosema Pedic 3e-04
2d3p_A 236 Cratylia Floribunda Seed Lectin Crystallized At Bas 4e-04
1viw_B205 Tenebrio Molitor Alpha-Amylase-Inhibitor Complex Le 4e-04
1dhk_B223 Structure Of Porcine Pancreatic Alpha-Amylase Lengt 5e-04
1cn1_A 237 Crystal Structure Of Demetallized Concanavalin A. T 8e-04
2cna_A 237 The Covalent And Three-Dimensional Structure Of Con 8e-04
1ofs_B48 Pea Lectin-sucrose Complex Length = 48 8e-04
1bqp_B47 The Structure Of The Pea Lectin-D-Mannopyranose Com 8e-04
2ow4_A 237 Crystal Structure Of A Lectin From Canavalia Mariti 8e-04
2cwm_A 237 Native Crystal Structure Of No Releasing Inductive 8e-04
1rin_D49 X-Ray Crystal Structure Of A Pea Lectin-Trimannosid 8e-04
2ovu_A 237 Crystal Strucure Of A Lectin From Canavalia Gladiat 9e-04
1wuv_A 237 Crystal Structure Of Native Canavalia Gladiata Lect 9e-04
1azd_A 237 Concanavalin From Canavalia Brasiliensis Length = 2 9e-04
>pdb|2FMD|A Chain A, Structural Basis Of Carbohydrate Recognition By Bowringia Milbraedii Seed Agglutinin Length = 240 Back     alignment and structure 
Iteration: 1

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 107/240 (44%), Gaps = 23/240 (9%)
Query: 25  ISFSFPSFAKDSCDNKTLICYG--AIESSGALSITPGPPPNLPIR-KVGRVLYGKPLSLQ 81
           + F+F  F     D   LI  G  ++ S+ AL +T       P    VGR LY  P+ L 
Sbjct: 4   VCFTFTDFESGQQD---LIFQGDASVGSNKALQLTKVDSKGNPQGGSVGRALYTAPIRLW 60
Query: 82  RSF-----IDTTITIKISRHQNYTDRAGDGMTFIFAS-DKNGPSAKGVGEYLGL---QSS 132
           +S       +TT T  IS+    +    D +TF  AS D   PS  G G  LGL    ++
Sbjct: 61  QSSSLVASFETTFTFSISQG---SSTPADALTFFIASPDTKIPSGSG-GRLLGLFGSSNN 116
Query: 133 PGDKFPPLAVELDTCLNKNLXXXXXXXXXXXXXXXESNPVNSLLDVDLKSGRAIQVRIYY 192
            G     ++VE DT  N ++                S   +     D ++G+     I Y
Sbjct: 117 AGSDNGVVSVEFDTYPNTDIGDPNYRHIGIDVNSIRSKAASKW---DWQNGKTATAHISY 173
Query: 193 NPDFGQLSIYAAYSGETLVKVIEKPINLSDIIPTPVYVGFTAATGDFLESHEVINWTFNS 252
           N    +LS+ ++Y   + V V+   + L+++ P  V VGF+A TG + +++ ++ W+F S
Sbjct: 174 NSASKRLSVVSSYPNSSPV-VVSFDVELNNVXPXWVRVGFSATTGQYTQTNNILAWSFRS 232
>pdb|1GZ9|A Chain A, High-Resolution Crystal Structure Of Erythrina Cristagalli Lectin In Complex With 2'-Alpha-L-Fucosyllactose Length = 239 Back     alignment and structure
>pdb|1LTE|A Chain A, Structure Of A Legume Lectin With An Ordered N-Linked Carbohydrate In Complex With Lactose Length = 239 Back     alignment and structure
>pdb|1SFY|A Chain A, Crystal Structure Of Recombinant Erythrina Corallodandron Lectin Length = 239 Back     alignment and structure
>pdb|3N35|A Chain A, Erythrina Corallodendron Lectin Mutant (Y106g) With N- Acetylgalactosamine Length = 242 Back     alignment and structure
>pdb|1FYU|A Chain A, Crystal Structure Of Erythrina Corallodendron Lectin In Hexagonal Crystal Form Length = 255 Back     alignment and structure
>pdb|1AX0|A Chain A, Erythrina Corallodendron Lectin In Complex With N-Actylgalactosamine Length = 239 Back     alignment and structure
>pdb|3USU|A Chain A, Crystal Structure Of Butea Monosperma Seed Lectin Length = 256 Back     alignment and structure
>pdb|3USU|B Chain B, Crystal Structure Of Butea Monosperma Seed Lectin Length = 242 Back     alignment and structure
>pdb|1UZY|A Chain A, Erythrina Crystagalli Lectin Length = 242 Back     alignment and structure
>pdb|3IPV|B Chain B, Crystal Structure Of Spatholobus Parviflorus Seed Lectin Length = 239 Back     alignment and structure
>pdb|3UJO|A Chain A, Galactose-Specific Seed Lectin From Dolichos Lablab In Complex With Adenine And Galactose Length = 281 Back     alignment and structure
>pdb|1FAT|A Chain A, Phytohemagglutinin-L Length = 252 Back     alignment and structure
>pdb|2BQP|A Chain A, The Structure Of The Pea Lectin-D-Glucopyranose Complex Length = 234 Back     alignment and structure
>pdb|1FAY|A Chain A, Winged Bean Acidic Lectin Complexed With Methyl-Alpha-D-Galactose (Monoclinic Form) Length = 238 Back     alignment and structure
>pdb|1G8W|A Chain A, Improved Structure Of Phytohemagglutinin-L From The Kidney Bean Length = 233 Back     alignment and structure
>pdb|3ZVX|A Chain A, Structure Of The Lectin From Platypodium Elegans In Complex With A Trimannoside Length = 261 Back     alignment and structure
>pdb|3IPV|A Chain A, Crystal Structure Of Spatholobus Parviflorus Seed Lectin Length = 251 Back     alignment and structure
>pdb|1BJQ|A Chain A, The Dolichos Biflorus Seed Lectin In Complex With Adenine Length = 253 Back     alignment and structure
>pdb|2SBA|A Chain A, Soybean Agglutinin Complexed With 2,6-Pentasaccharide Length = 253 Back     alignment and structure
>pdb|1N47|A Chain A, Isolectin B4 From Vicia Villosa In Complex With The Tn Antigen Length = 233 Back     alignment and structure
>pdb|1QNW|A Chain A, Lectin Ii From Ulex Europaeus Length = 242 Back     alignment and structure
>pdb|1IOA|A Chain A, Arcelin-5, A Lectin-Like Defense Protein From Phaseolus Vulgaris Length = 240 Back     alignment and structure
>pdb|1N3O|A Chain A, Pterocarcpus Angolensis Lectin In Complex With Alpha-Methyl Glucose Length = 252 Back     alignment and structure
>pdb|1Q8O|A Chain A, Pterocartpus Angolensis Lectin Pal In Complex With The Dimmanoside Man(Alpha1-2)man Length = 252 Back     alignment and structure
>pdb|1WBL|A Chain A, Winged Bean Lectin Complexed With Methyl-Alpha-D-Galactose Length = 241 Back     alignment and structure
>pdb|2E7Q|A Chain A, Crystal Structure Of Basic Winged Bean Lectin In Complex With B Blood Group Trisaccharide Length = 237 Back     alignment and structure
>pdb|1WBF|A Chain A, Winged Bean Lectin, Saccharide Free Form Length = 242 Back     alignment and structure
>pdb|2EIG|A Chain A, Lotus Tetragonolobus Seed Lectin (Isoform) Length = 234 Back     alignment and structure
>pdb|2JE9|A Chain A, Crystal Structure Of Recombinant Dioclea Grandiflora Lectin Complexed With 5-Bromo-4-Chloro-3-Indolyl-A-D-Mannose Length = 239 Back     alignment and structure
>pdb|1GSL|A Chain A, Lectin (Fourth Isolated From (Griffonia Simplicifolia)) Complex With Y Human Blood Group Determinant Length = 243 Back     alignment and structure
>pdb|3SH3|A Chain A, Crystal Structure Of A Pro-Inflammatory Lectin From The Seeds Of Dioclea Wilsonii Standl Length = 237 Back     alignment and structure
>pdb|2JEC|A Chain A, Crystal Structure Of Recombinant Dioclea Grandiflora Lectin Mutant E123a-H131n-K132q Complexed With 5-Bromo-4-Chloro-3- Indolyl-A-D-Mannose Length = 239 Back     alignment and structure
>pdb|1DGL|A Chain A, Lectin From Dioclea Grandiflora Complexed To Trimannoside Length = 237 Back     alignment and structure
>pdb|2GDF|A Chain A, Crystal Structure Of Dioclea Violacea Seed Lectin Length = 237 Back     alignment and structure
>pdb|2JDZ|A Chain A, Crystal Structure Of Recombinant Dioclea Guianensis Lectin Complexed With 5-Bromo-4-Chloro-3-Indolyl-A-D-Mannose Length = 239 Back     alignment and structure
>pdb|2JE7|A Chain A, Crystal Structure Of Recombinant Dioclea Guianensis Lectin S131h Complexed With 5-Bromo-4-Chloro-3-Indolyl-A-D-Mannose Length = 239 Back     alignment and structure
>pdb|2ZBJ|A Chain A, Crystal Structure Of Dioclea Rostrata Lectin Length = 237 Back     alignment and structure
>pdb|1DBN|A Chain A, Maackia Amurensis Leukoagglutinin (Lectin) With Sialyllactose Length = 239 Back     alignment and structure
>pdb|3A0K|A Chain A, Crystal Structure Of An Antiflamatory Legume Lectin From Cymbosema Roseum Seeds Length = 237 Back     alignment and structure
>pdb|3RRD|A Chain A, Native Structure Of Dioclea Virgata Lectin Length = 237 Back     alignment and structure
>pdb|1H9W|A Chain A, Native Dioclea Guianensis Seed Lectin Length = 237 Back     alignment and structure
>pdb|1H9P|A Chain A, Crystal Structure Of Dioclea Guianensis Seed Lectin Length = 237 Back     alignment and structure
>pdb|1MVQ|A Chain A, Cratylia Mollis Lectin (Isoform 1) In Complex With Methyl-Alpha-D- Mannose Length = 236 Back     alignment and structure
>pdb|1LUL|A Chain A, Db58, A Legume Lectin From Dolichos Biflorus Length = 253 Back     alignment and structure
>pdb|3U4X|A Chain A, Crystal Structure Of A Lectin From Camptosema Pedicellatum Seeds In Complex With 5-Bromo-4-Chloro-3-Indolyl-Alpha-D-Mannose Length = 236 Back     alignment and structure
>pdb|2D3P|A Chain A, Cratylia Floribunda Seed Lectin Crystallized At Basic Ph Length = 236 Back     alignment and structure
>pdb|1VIW|B Chain B, Tenebrio Molitor Alpha-Amylase-Inhibitor Complex Length = 205 Back     alignment and structure
>pdb|1DHK|B Chain B, Structure Of Porcine Pancreatic Alpha-Amylase Length = 223 Back     alignment and structure
>pdb|1CN1|A Chain A, Crystal Structure Of Demetallized Concanavalin A. The Metal- Binding Region Length = 237 Back     alignment and structure
>pdb|2CNA|A Chain A, The Covalent And Three-Dimensional Structure Of Concanavalin A, Iv.Atomic Coordinates,Hydrogen Bonding,And Quaternary Structure Length = 237 Back     alignment and structure
>pdb|1OFS|B Chain B, Pea Lectin-sucrose Complex Length = 48 Back     alignment and structure
>pdb|1BQP|B Chain B, The Structure Of The Pea Lectin-D-Mannopyranose Complex Length = 47 Back     alignment and structure
>pdb|2OW4|A Chain A, Crystal Structure Of A Lectin From Canavalia Maritima Seeds (Conm) In Complex With Man1-2man-Ome Length = 237 Back     alignment and structure
>pdb|2CWM|A Chain A, Native Crystal Structure Of No Releasing Inductive Lectin From Seeds Of The Canavalia Maritima (Conm) Length = 237 Back     alignment and structure
>pdb|1RIN|D Chain D, X-Ray Crystal Structure Of A Pea Lectin-Trimannoside Complex At 2.6 Angstroms Resolution Length = 49 Back     alignment and structure
>pdb|2OVU|A Chain A, Crystal Strucure Of A Lectin From Canavalia Gladiata (Cgl) In Complex With Man1-2man-Ome Length = 237 Back     alignment and structure
>pdb|1WUV|A Chain A, Crystal Structure Of Native Canavalia Gladiata Lectin (Cgl): A Tetrameric Cona-Like Lectin Length = 237 Back     alignment and structure
>pdb|1AZD|A Chain A, Concanavalin From Canavalia Brasiliensis Length = 237 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
1v6i_A232 Agglutinin, PNA, galactose-binding lectin; open qu 4e-45
3ipv_A251 Lectin alpha chain; galactose binding, SEED lectin 1e-43
2fmd_A240 Lectin, agglutinin, BMA; legume lectin, beta sandw 3e-42
1hql_A257 Lectin; xenograft antigen, sugar BI protein; HET: 4e-42
1gsl_A243 Griffonia simplicifolia lectin 4; glycoprotein, ma 9e-42
1n47_A233 Isolectin B4; cancer antigen, vicia villosa lectin 2e-41
2eig_A234 Lectin; L-fucosyl, N-acetyl-D-glucosamine, SUG bin 1e-40
1fny_A237 BARK lectin, BARK agglutinin I,polypeptide A; legu 1e-40
3zyr_A261 Lectin; sugar binding protein, N-glycan; HET: NAG 6e-40
1fx5_A242 UEA-I, UE-I, anti-H(O) lectin I; legume lectin, HO 1e-39
1gzc_A239 Erythrina crista-galli lectin; carbohydrate, sugar 4e-39
1wbf_A242 Protein (agglutinin); lectin (agglutinin), legume 6e-39
1dbn_A239 MAL, protein (leukoagglutinin); plant lectin, carb 1e-38
1sbf_A253 Soybean agglutinin; lectin; HET: NAG GAL; 2.43A {G 1e-38
1g7y_A253 Stem/LEAF lectin DB58; jelly roll fold, sugar bind 5e-38
1qnw_A242 Chitin binding lectin, UEA-II; carbohydrate bindin 1e-37
1fat_A252 Phytohemagglutinin-L; glycoprotein, plant defense 2e-37
2bqp_A234 Protein (PEA lectin); D-glucopyranose complex, sug 2e-37
1ioa_A240 Arcelin-5A, ARC5A; lectin-like proteins, plant def 2e-35
1f9k_A238 Acidic lectin; legume lectin, glycosylated protein 4e-34
1avb_A226 Arcelin-1; lectin-like glycoprotein, plant defense 4e-32
1dhk_B223 Bean lectin-like inhibitor, porcine pancreatic alp 3e-31
1qmo_E133 Mannose binding lectin, FRIL; crosslink, hematopoi 2e-28
1nls_A 237 Concanavalin A; lectin, agglutinin; 0.94A {Canaval 6e-25
1nls_A237 Concanavalin A; lectin, agglutinin; 0.94A {Canaval 1e-05
2ltn_A181 PEA lectin, alpha chain; 1.70A {Pisum sativum} SCO 2e-24
2dur_A253 VIP36;, vesicular integral-membrane protein VIP36; 4e-17
1gv9_A260 P58/ergic-53; lectin, carbohydrate binding; 1.46A 2e-14
1qmo_A113 Mannose binding lectin, FRIL; crosslink, hematopoi 4e-11
2ltn_B52 PEA lectin, beta chain; 1.70A {Pisum sativum} SCOP 2e-09
2a6v_A226 EMP46P; beta sandwich, carbohydrate binding protei 6e-08
2a6z_A222 EMP47P (FORM2); beta sandwich, carbohydrate bindin 4e-06
2a6y_A256 EMP47P (FORM1); beta sandwich, carbohydrate bindin 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>1v6i_A Agglutinin, PNA, galactose-binding lectin; open quaternary association, orthorhombic, carbohydrate specificity, protein crystallography; HET: GAL GLC; 2.15A {Arachis hypogaea} SCOP: b.29.1.1 PDB: 1bzw_A* 1v6j_A* 1v6k_A* 1v6l_A* 1v6m_A 1v6n_A 1v6o_A 2dva_A* 1cq9_A 1ciw_A* 1qf3_A* 1rir_A* 1rit_A* 2dh1_A 1cr7_A* 2dv9_A* 2dvb_A* 2dvd_A* 2dvf_A 2dvg_A* ... Length = 232 Back     alignment and structure
 Score =  151 bits (381), Expect = 4e-45
 Identities = 58/239 (24%), Positives = 99/239 (41%), Gaps = 22/239 (9%)

Query: 23  TPISFSFPSFAKDSCDNKTLICYG--AIESSGALSITPGPPPNLPIRKVGRVLYGKPLSL 80
             +SF+F SF++    N  +   G   + S+G + +T     N     VGRVLY  P+ +
Sbjct: 2   ETVSFNFNSFSEG---NPAINFQGDVTVLSNGNIQLTNLNKVN----SVGRVLYAMPVRI 54

Query: 81  QRS------FIDTTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGVGEYLGLQSSPG 134
             S         T+ + ++           DG+ F  A +     A  +G      S   
Sbjct: 55  WSSATGNVASFLTSFSFEMKDI--KDYDPADGIIFFIAPEDTQIPAGSIGGGTLGVSDTK 112

Query: 135 DKFPPLAVELDTCLNKNLNDPDDNHIGIDINGIESNPVNSLLDVDLKSGRAIQVRIYYNP 194
                + VE DT  N   NDP  +H+GID+N ++S         +  SG  ++V + Y+ 
Sbjct: 113 GAGHFVGVEFDTYSNSEYNDPPTDHVGIDVNSVDSVKTVPW---NSVSGAVVKVTVIYDS 169

Query: 195 DFGQLSIYAAYSGETLVKVIEKPINLSDIIPTPVYVGFTAATG-DFLESHEVINWTFNS 252
               LS+         +  I + ++L   +P  V  GF+A+      + H + +W+F S
Sbjct: 170 STKTLSVAVTNDN-GDITTIAQVVDLKAKLPERVKFGFSASGSLGGRQIHLIRSWSFTS 227
>3ipv_A Lectin alpha chain; galactose binding, SEED lectin, hemagglutinin, legume lectin fungal, sugar binding protein; 2.04A {Spatholobus parviflorus} PDB: 3ipv_B 3usu_B* 3usu_A* Length = 251 Back     alignment and structure
>2fmd_A Lectin, agglutinin, BMA; legume lectin, beta sandwich, protein-carbohydrate complex, sugar binding protein; HET: MAN; 1.90A {Bowringia mildbraedii} Length = 240 Back     alignment and structure
>1hql_A Lectin; xenograft antigen, sugar BI protein; HET: GLA MBG NAG; 2.20A {Griffonia simplicifolia} SCOP: b.29.1.1 PDB: 1gnz_A* Length = 257 Back     alignment and structure
>1gsl_A Griffonia simplicifolia lectin 4; glycoprotein, manganese; HET: FUC GAL MAG NAG BMA; 2.00A {Griffonia simplicifolia} SCOP: b.29.1.1 PDB: 1lec_A* 1led_A* Length = 243 Back     alignment and structure
>1n47_A Isolectin B4; cancer antigen, vicia villosa lectin, glycoprotein TN-bindin protein, carbohydrate recognition, sugar binding protein; HET: NAG FUC TNR; 2.70A {Vicia villosa} SCOP: b.29.1.1 Length = 233 Back     alignment and structure
>2eig_A Lectin; L-fucosyl, N-acetyl-D-glucosamine, SUG binding protein; HET: NAG; 2.00A {Lotus tetragonolobus} Length = 234 Back     alignment and structure
>1fny_A BARK lectin, BARK agglutinin I,polypeptide A; legume lectin, jelly roll, sugar binding protein; 1.81A {Robinia pseudoacacia} SCOP: b.29.1.1 PDB: 1fnz_A* Length = 237 Back     alignment and structure
>3zyr_A Lectin; sugar binding protein, N-glycan; HET: NAG BMA MAN GOL; 1.65A {Platypodium elegans} PDB: 3zvx_A* 1ukg_A* 1q8o_A* 1q8q_A* 1q8s_A* 1q8v_A* 1q8p_A* 2auy_A* 2gme_A 2gmm_A* 2gmp_A* 2gn3_A* 2gn7_A* 2gnb_A* 2gnd_A* 2gnm_A* 2gnt_A 2phf_A* 2phr_A* 2pht_A* ... Length = 261 Back     alignment and structure
>1fx5_A UEA-I, UE-I, anti-H(O) lectin I; legume lectin, HOMO-dimer, fucose specific lectin, SUG binding protein; HET: NAG FUC BMA MAN; 2.20A {Ulex europaeus} SCOP: b.29.1.1 PDB: 1jxn_A* Length = 242 Back     alignment and structure
>1gzc_A Erythrina crista-galli lectin; carbohydrate, sugar binding protein, saccharide, protein-carbohydrate interactions, lactose, glycoprotein; HET: LAT; 1.58A {Erythrina crista-galli} SCOP: b.29.1.1 PDB: 1gz9_A* 1fyu_A* 1ax0_A* 1ax1_A* 1ax2_A* 1axy_A* 1axz_A* 1lte_A* 1sfy_A* 1v00_A* 1uzz_A 1uzy_A* 3n35_A* 3n36_A* 3n3h_A* Length = 239 Back     alignment and structure
>1wbf_A Protein (agglutinin); lectin (agglutinin), legume lectin, protein crystallography, group specificity, saccharide free form; HET: NAG; 2.30A {Psophocarpus tetragonolobus} SCOP: b.29.1.1 PDB: 2d3s_A* 2dtw_A* 1wbl_A* 2dty_A* 2du0_A* 2du1_A* 2e51_A* 2e53_A* 2zmk_A* 2zml_A* 2zmn_A* 2e7t_A* 2e7q_A* Length = 242 Back     alignment and structure
>1dbn_A MAL, protein (leukoagglutinin); plant lectin, carbohydrate binding, sialyllactose, sugar BIN protein; HET: NAG SIA GAL BGC; 2.75A {Maackia amurensis} SCOP: b.29.1.1 Length = 239 Back     alignment and structure
>1sbf_A Soybean agglutinin; lectin; HET: NAG GAL; 2.43A {Glycine max} SCOP: b.29.1.1 PDB: 1sbd_A* 1sbe_A* 1g9f_A* 2sba_A* Length = 253 Back     alignment and structure
>1g7y_A Stem/LEAF lectin DB58; jelly roll fold, sugar binding protein; HET: NAG FUC FUL; 2.50A {Vigna unguiculata subsp} SCOP: b.29.1.1 PDB: 1lul_A 1lu1_A* 1bjq_A* 1lu2_A* Length = 253 Back     alignment and structure
>1qnw_A Chitin binding lectin, UEA-II; carbohydrate binding; HET: NAG; 2.35A {Ulex europaeus} SCOP: b.29.1.1 PDB: 1dzq_A* 1qoo_A* 1qos_A* 1qot_A* Length = 242 Back     alignment and structure
>1fat_A Phytohemagglutinin-L; glycoprotein, plant defense protein, lectin; HET: NAG; 2.80A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB: 1g8w_A* Length = 252 Back     alignment and structure
>2bqp_A Protein (PEA lectin); D-glucopyranose complex, sugar binding protein; HET: GLC; 1.90A {Pisum sativum} SCOP: b.29.1.1 Length = 234 Back     alignment and structure
>1ioa_A Arcelin-5A, ARC5A; lectin-like proteins, plant defense proteins, lectin; HET: NAG FUC; 2.70A {Phaseolus vulgaris} SCOP: b.29.1.1 Length = 240 Back     alignment and structure
>1f9k_A Acidic lectin; legume lectin, glycosylated protein, H-antigenic specificity agglutinin, sugar binding protein; HET: NAG MAN AMG; 3.00A {Psophocarpus tetragonolobus} SCOP: b.29.1.1 PDB: 1fay_A* Length = 238 Back     alignment and structure
>1avb_A Arcelin-1; lectin-like glycoprotein, plant defense, insecticidal activi lectin; HET: NAG; 1.90A {Phaseolus vulgaris} SCOP: b.29.1.1 Length = 226 Back     alignment and structure
>1dhk_B Bean lectin-like inhibitor, porcine pancreatic alpha-amylase; CO (hydrolase-inhibitor), complex (hydrolase-inhibitor) comple; HET: NAG; 1.85A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB: 1viw_B* Length = 223 Back     alignment and structure
>1qmo_E Mannose binding lectin, FRIL; crosslink, hematopoietic progenitor, sugar complex; HET: MAN; 3.5A {Dolichos lab lab} SCOP: b.29.1.1 Length = 133 Back     alignment and structure
>1nls_A Concanavalin A; lectin, agglutinin; 0.94A {Canavalia ensiformis} SCOP: b.29.1.1 PDB: 1bxh_A* 1apn_A 1ces_A 1cjp_A* 1c57_A 1cvn_A* 1con_A 1dq1_A 1dq2_A 1dq4_A 1dq5_A 1dq6_A 1enq_A 1enr_A 1ens_A 1gic_A* 1dq0_A 1hqw_A 1gkb_A* 1i3h_A ... Length = 237 Back     alignment and structure
>1nls_A Concanavalin A; lectin, agglutinin; 0.94A {Canavalia ensiformis} SCOP: b.29.1.1 PDB: 1bxh_A* 1apn_A 1ces_A 1cjp_A* 1c57_A 1cvn_A* 1con_A 1dq1_A 1dq2_A 1dq4_A 1dq5_A 1dq6_A 1enq_A 1enr_A 1ens_A 1gic_A* 1dq0_A 1hqw_A 1gkb_A* 1i3h_A ... Length = 237 Back     alignment and structure
>2ltn_A PEA lectin, alpha chain; 1.70A {Pisum sativum} SCOP: b.29.1.1 PDB: 1bqp_A* 1hkd_A 1ofs_A* 1rin_A* 1lof_C* 1len_A 1lem_A 1les_A* 2lal_A 1loe_A 1loa_A* 1loc_A* 1lod_A* 1lob_A 1lof_A* 1log_A* 1lgc_A* 1lgb_A* 2b7y_A* Length = 181 Back     alignment and structure
>2dur_A VIP36;, vesicular integral-membrane protein VIP36; beta sandwich, carbohydrate binding protein, cargo receptor, transport; HET: MAN; 1.65A {Canis lupus familiaris} PDB: 2dup_A 2duq_A* 2duo_A* 2e6v_A* Length = 253 Back     alignment and structure
>1gv9_A P58/ergic-53; lectin, carbohydrate binding; 1.46A {Rattus norvegicus} SCOP: b.29.1.13 PDB: 1r1z_A 3a4u_A 3lcp_A Length = 260 Back     alignment and structure
>1qmo_A Mannose binding lectin, FRIL; crosslink, hematopoietic progenitor, sugar complex; HET: MAN; 3.5A {Dolichos lab lab} SCOP: b.29.1.1 Length = 113 Back     alignment and structure
>2ltn_B PEA lectin, beta chain; 1.70A {Pisum sativum} SCOP: b.29.1.1 PDB: 1hkd_B 1rin_B* 1ofs_B* 1bqp_B* 1loe_B 1loa_B* 1loc_B* 1lod_B* 1lob_B 1lof_B* 1log_B* 1lof_D* 1les_B* 2b7y_B* 1lgc_B* 1lgb_B* 1len_B 1lem_B 2lal_B Length = 52 Back     alignment and structure
>2a6v_A EMP46P; beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.52A {Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a6w_A 2a6x_A Length = 226 Back     alignment and structure
>2a6z_A EMP47P (FORM2); beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.00A {Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a70_A 2a71_A Length = 222 Back     alignment and structure
>2a6y_A EMP47P (FORM1); beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.42A {Saccharomyces cerevisiae} SCOP: b.29.1.13 Length = 256 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
3ujo_A281 Legume lectin; carbohydrate-binding, galactose, ad 100.0
3zyr_A261 Lectin; sugar binding protein, N-glycan; HET: NAG 100.0
3ipv_A251 Lectin alpha chain; galactose binding, SEED lectin 100.0
1dbn_A239 MAL, protein (leukoagglutinin); plant lectin, carb 100.0
1fny_A237 BARK lectin, BARK agglutinin I,polypeptide A; legu 100.0
1qnw_A242 Chitin binding lectin, UEA-II; carbohydrate bindin 100.0
1v6i_A232 Agglutinin, PNA, galactose-binding lectin; open qu 100.0
1fx5_A242 UEA-I, UE-I, anti-H(O) lectin I; legume lectin, HO 100.0
2eig_A234 Lectin; L-fucosyl, N-acetyl-D-glucosamine, SUG bin 100.0
1sbf_A253 Soybean agglutinin; lectin; HET: NAG GAL; 2.43A {G 100.0
1gzc_A239 Erythrina crista-galli lectin; carbohydrate, sugar 100.0
1n47_A233 Isolectin B4; cancer antigen, vicia villosa lectin 100.0
1f9k_A238 Acidic lectin; legume lectin, glycosylated protein 100.0
1fat_A252 Phytohemagglutinin-L; glycoprotein, plant defense 100.0
1g7y_A253 Stem/LEAF lectin DB58; jelly roll fold, sugar bind 100.0
2bqp_A234 Protein (PEA lectin); D-glucopyranose complex, sug 100.0
1wbf_A242 Protein (agglutinin); lectin (agglutinin), legume 100.0
2fmd_A240 Lectin, agglutinin, BMA; legume lectin, beta sandw 100.0
1hql_A257 Lectin; xenograft antigen, sugar BI protein; HET: 100.0
1gsl_A243 Griffonia simplicifolia lectin 4; glycoprotein, ma 100.0
1avb_A226 Arcelin-1; lectin-like glycoprotein, plant defense 100.0
1ioa_A240 Arcelin-5A, ARC5A; lectin-like proteins, plant def 100.0
1dhk_B223 Bean lectin-like inhibitor, porcine pancreatic alp 100.0
2ltn_A181 PEA lectin, alpha chain; 1.70A {Pisum sativum} SCO 100.0
2dur_A253 VIP36;, vesicular integral-membrane protein VIP36; 100.0
1gv9_A260 P58/ergic-53; lectin, carbohydrate binding; 1.46A 100.0
1qmo_E133 Mannose binding lectin, FRIL; crosslink, hematopoi 100.0
1nls_A 237 Concanavalin A; lectin, agglutinin; 0.94A {Canaval 100.0
2a6y_A256 EMP47P (FORM1); beta sandwich, carbohydrate bindin 99.97
2a6z_A222 EMP47P (FORM2); beta sandwich, carbohydrate bindin 99.92
1qmo_A113 Mannose binding lectin, FRIL; crosslink, hematopoi 99.88
2a6v_A226 EMP46P; beta sandwich, carbohydrate binding protei 99.86
1nls_A237 Concanavalin A; lectin, agglutinin; 0.94A {Canaval 99.82
2ltn_B52 PEA lectin, beta chain; 1.70A {Pisum sativum} SCOP 99.51
>3ujo_A Legume lectin; carbohydrate-binding, galactose, adenine binding protein; HET: ADE GAL; 2.00A {Dolichos lablab} PDB: 3ujq_A* 3uk9_A* 3ul2_A* 1fat_A* 1g8w_A* Back     alignment and structure
Probab=100.00  E-value=4.4e-60  Score=426.41  Aligned_cols=232  Identities=27%  Similarity=0.451  Sum_probs=193.1

Q ss_pred             CchhhHHHHHhhcccccccCCCCceeEEcCCCCCCCCCccccccccCeEEecceEeCCCCC---CCCCCC------ceEE
Q 024380            1 MIFLLLLSVFLRGASSSILSEDTPISFSFPSFAKDSCDNKTLICYGAIESSGALSITPGPP---PNLPIR------KVGR   71 (268)
Q Consensus         1 ~~~~~~~~~~l~~~~~~~~~~~~~~~F~f~~F~~~~~~~~~~~~~~~l~l~G~A~~~~~~i---T~~~~~------~~G~   71 (268)
                      |..+++++|||..+.++     ..++|+|++|..           ++|+|+|+|.+. +|.   |++..+      ++||
T Consensus         8 ~~~~~~fl~l~~~~~sa-----~~~sF~f~~F~~-----------~nL~l~GdA~i~-~g~L~LT~~~~~~~p~~~s~Gr   70 (281)
T 3ujo_A            8 MKRIVLFLILLTKAASA-----NLISFTFKKFNE-----------TNLILQRDATVS-SGKLRITKAAENGVPTAGSLGR   70 (281)
T ss_dssp             ----------------C-----EEEEEEESSCCS-----------TTEEECSSCCCB-TTBEECSCCCSSCCCCSSCEEE
T ss_pred             HHHHHHHHHHHcccCcC-----CcceEEcCCCCc-----------cCEEEecceEEe-CCEEEeCCCCCCCcccCCceEE
Confidence            34455677777766544     789999999985           789999999998 654   777654      9999


Q ss_pred             EEeccceeccc------CCeEEEEEEEEeecccCCCCCCCceEEEEecCCCCCCCCCCCccccCCCC--CCCCCCcEEEE
Q 024380           72 VLYGKPLSLQR------SFIDTTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGVGEYLGLQSS--PGDKFPPLAVE  143 (268)
Q Consensus        72 ~~y~~Pi~l~~------~sFst~F~F~I~~~~~~~~~~gDGlAF~l~~~~~~~~~~~~Gg~lGl~~~--~~~~~~~vAVE  143 (268)
                      |+|++||++||      ++|+|+|+|.|.+  +....+||||||+|+|.+ ..| +..||||||+|.  .+..++.||||
T Consensus        71 a~Y~~Pi~l~d~~tg~vaSFsTsFsF~I~~--~~~~~~gdGlAF~laP~~-~~p-~~~gg~LGL~n~~~~~~~n~~vAVE  146 (281)
T 3ujo_A           71 AFYSTPIQIWDNTTGTVASWATSFTFNLQA--PNAASPADGLAFALVPVG-SQP-KDKGGFLGLFDSKNYASSNQTVAVE  146 (281)
T ss_dssp             EEESSCEECBCSSSCCBEEEEEEEEEECCC--SSTTSCCEEEEEEEEETT-CCC-CCCGGGTTTCSCSSCCTTSCCEEEE
T ss_pred             EEECCCEEcccCCCCCceeEEEEEEEEEec--CCCCCCCCceEEEEecCC-CCC-CCCcceeeeccccCCCccCcEEEEE
Confidence            99999999998      6899999999998  666779999999999987 344 578999999986  34678999999


Q ss_pred             EeccCc-CCCCCCCCCeeEEecCCCcccccccccccccCCCceEEEEEEEecCCcEEEEEEEecCCCceeEEEEeeeCCC
Q 024380          144 LDTCLN-KNLNDPDDNHIGIDINGIESNPVNSLLDVDLKSGRAIQVRIYYNPDFGQLSIYAAYSGETLVKVIEKPINLSD  222 (268)
Q Consensus       144 FDT~~N-~~~~Dp~~~HVgI~~ns~~s~~~~~~~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~~~~~~~~ls~~idL~~  222 (268)
                      |||++| +|  ||+++|||||+|++.|.++.+|   ++.+|+.++|||+||+.+++|+|+|.+...+++|+++..+||++
T Consensus       147 FDT~~N~e~--Dp~~nHVGIDvNSi~S~~t~~~---~l~~G~~~~vwI~Yd~~tk~L~V~l~~~~~~~~~~lS~~vDL~~  221 (281)
T 3ujo_A          147 FDTFYNGGW--DPTERHIGIDVNSIKSIKTTSW---DFANGENAEVLITYDSSTNLLVASLVHPSQKTSFIVSERVDLTS  221 (281)
T ss_dssp             ECCSCCCSS--CCSSSEEEEEESSSCCSCEEEC---CCCSSCCEEEEEEECTTTCEEEEEEECTTTCCCEEEEEECCSTT
T ss_pred             EeccccccC--CCCCCeEEEEcCCCCccccccc---cccCCCEEEEEEEEeCCCCEEEEEEecCCCCCCceEEEEechHH
Confidence            999999 99  9999999999999999988876   57899999999999999999999999865566899999999999


Q ss_pred             CCCCceEEEEEeecCC---cccceEEEEEEEeeCCCCCC
Q 024380          223 IIPTPVYVGFTAATGD---FLESHEVINWTFNSFPVPPS  258 (268)
Q Consensus       223 ~l~~~~yvGFSAsTG~---~~~~h~I~sWsF~s~~~~~~  258 (268)
                      +|+++|||||||+||.   ..|.|+|++|+|++......
T Consensus       222 ~L~e~v~VGFSAsTG~~~~~~e~H~IlsWSFss~l~~~~  260 (281)
T 3ujo_A          222 VLPEWVSVGFSATTGLSKGYVETNEVLSWSFASKLSINK  260 (281)
T ss_dssp             TSCSEEEEEEEEEECSSTTSCCCCEEEEEEEEEEECSSS
T ss_pred             hccCcEEEEEEeecCCCCcccceeEEEEEEEEEEcCCCC
Confidence            9999999999999996   68999999999999877654
>3zyr_A Lectin; sugar binding protein, N-glycan; HET: NAG BMA MAN GOL; 1.65A {Platypodium elegans} SCOP: b.29.1.1 PDB: 3zvx_A* 1ukg_A* 1q8o_A* 1q8q_A* 1q8s_A* 1q8v_A* 1q8p_A* 2auy_A* 2gme_A 2gmm_A* 2gmp_A* 2gn3_A* 2gn7_A* 2gnb_A* 2gnd_A* 2gnm_A* 2gnt_A 2phf_A* 2phr_A* 2pht_A* ... Back     alignment and structure
>3ipv_A Lectin alpha chain; galactose binding, SEED lectin, hemagglutinin, legume lectin fungal, sugar binding protein; 2.04A {Spatholobus parviflorus} PDB: 3ipv_B 3usu_B* 3usu_A* Back     alignment and structure
>1dbn_A MAL, protein (leukoagglutinin); plant lectin, carbohydrate binding, sialyllactose, sugar BIN protein; HET: NAG SIA GAL BGC; 2.75A {Maackia amurensis} SCOP: b.29.1.1 Back     alignment and structure
>1fny_A BARK lectin, BARK agglutinin I,polypeptide A; legume lectin, jelly roll, sugar binding protein; 1.81A {Robinia pseudoacacia} SCOP: b.29.1.1 PDB: 1fnz_A* Back     alignment and structure
>1qnw_A Chitin binding lectin, UEA-II; carbohydrate binding; HET: NAG; 2.35A {Ulex europaeus} SCOP: b.29.1.1 PDB: 1dzq_A* 1qoo_A* 1qos_A* 1qot_A* Back     alignment and structure
>1v6i_A Agglutinin, PNA, galactose-binding lectin; open quaternary association, orthorhombic, carbohydrate specificity, protein crystallography; HET: GAL GLC; 2.15A {Arachis hypogaea} SCOP: b.29.1.1 PDB: 1bzw_A* 1v6j_A* 1v6k_A* 1v6l_A* 1v6m_A 1v6n_A 1v6o_A 2dva_A* 1cq9_A 1ciw_A* 1qf3_A* 1rir_A* 1rit_A* 2dh1_A 1cr7_A* 2dv9_A* 2dvb_A* 2dvd_A* 2dvf_A 2dvg_A* ... Back     alignment and structure
>1fx5_A UEA-I, UE-I, anti-H(O) lectin I; legume lectin, HOMO-dimer, fucose specific lectin, SUG binding protein; HET: NAG FUC BMA MAN; 2.20A {Ulex europaeus} SCOP: b.29.1.1 PDB: 1jxn_A* Back     alignment and structure
>2eig_A Lectin; L-fucosyl, N-acetyl-D-glucosamine, SUG binding protein; HET: NAG; 2.00A {Lotus tetragonolobus} Back     alignment and structure
>1sbf_A Soybean agglutinin; lectin; HET: NAG GAL; 2.43A {Glycine max} SCOP: b.29.1.1 PDB: 1sbd_A* 1sbe_A* 1g9f_A* 2sba_A* Back     alignment and structure
>1gzc_A Erythrina crista-galli lectin; carbohydrate, sugar binding protein, saccharide, protein-carbohydrate interactions, lactose, glycoprotein; HET: LAT; 1.58A {Erythrina crista-galli} SCOP: b.29.1.1 PDB: 1gz9_A* 1fyu_A* 1ax0_A* 1ax1_A* 1ax2_A* 1axy_A* 1axz_A* 1lte_A* 1sfy_A* 1v00_A* 1uzz_A 1uzy_A* 3n35_A* 3n36_A* 3n3h_A* Back     alignment and structure
>1n47_A Isolectin B4; cancer antigen, vicia villosa lectin, glycoprotein TN-bindin protein, carbohydrate recognition, sugar binding protein; HET: NAG FUC TNR; 2.70A {Vicia villosa} SCOP: b.29.1.1 Back     alignment and structure
>1f9k_A Acidic lectin; legume lectin, glycosylated protein, H-antigenic specificity agglutinin, sugar binding protein; HET: NAG MAN AMG; 3.00A {Psophocarpus tetragonolobus} SCOP: b.29.1.1 PDB: 1fay_A* Back     alignment and structure
>1fat_A Phytohemagglutinin-L; glycoprotein, plant defense protein, lectin; HET: NAG; 2.80A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB: 1g8w_A* Back     alignment and structure
>1g7y_A Stem/LEAF lectin DB58; jelly roll fold, sugar binding protein; HET: NAG FUC FUL; 2.50A {Vigna unguiculata subsp} SCOP: b.29.1.1 PDB: 1lul_A 1lu1_A* 1bjq_A* 1lu2_A* Back     alignment and structure
>2bqp_A Protein (PEA lectin); D-glucopyranose complex, sugar binding protein; HET: GLC; 1.90A {Pisum sativum} SCOP: b.29.1.1 Back     alignment and structure
>1wbf_A Protein (agglutinin); lectin (agglutinin), legume lectin, protein crystallography, group specificity, saccharide free form; HET: NAG; 2.30A {Psophocarpus tetragonolobus} SCOP: b.29.1.1 PDB: 2d3s_A* 2dtw_A* 1wbl_A* 2dty_A* 2du0_A* 2du1_A* 2e51_A* 2e53_A* 2zmk_A* 2zml_A* 2zmn_A* 2e7t_A* 2e7q_A* Back     alignment and structure
>2fmd_A Lectin, agglutinin, BMA; legume lectin, beta sandwich, protein-carbohydrate complex, sugar binding protein; HET: MAN; 1.90A {Bowringia mildbraedii} Back     alignment and structure
>1hql_A Lectin; xenograft antigen, sugar BI protein; HET: GLA MBG NAG; 2.20A {Griffonia simplicifolia} SCOP: b.29.1.1 PDB: 1gnz_A* Back     alignment and structure
>1gsl_A Griffonia simplicifolia lectin 4; glycoprotein, manganese; HET: FUC GAL MAG NAG BMA; 2.00A {Griffonia simplicifolia} SCOP: b.29.1.1 PDB: 1lec_A* 1led_A* Back     alignment and structure
>1avb_A Arcelin-1; lectin-like glycoprotein, plant defense, insecticidal activi lectin; HET: NAG; 1.90A {Phaseolus vulgaris} SCOP: b.29.1.1 Back     alignment and structure
>1ioa_A Arcelin-5A, ARC5A; lectin-like proteins, plant defense proteins, lectin; HET: NAG FUC; 2.70A {Phaseolus vulgaris} SCOP: b.29.1.1 Back     alignment and structure
>1dhk_B Bean lectin-like inhibitor, porcine pancreatic alpha-amylase; CO (hydrolase-inhibitor), complex (hydrolase-inhibitor) comple; HET: NAG; 1.85A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB: 1viw_B* Back     alignment and structure
>2ltn_A PEA lectin, alpha chain; 1.70A {Pisum sativum} SCOP: b.29.1.1 PDB: 1bqp_A* 1hkd_A 1ofs_A* 1rin_A* 1lof_C* 1len_A 1lem_A 1les_A* 2lal_A 1loe_A 1loa_A* 1loc_A* 1lod_A* 1lob_A 1lof_A* 1log_A* 1lgc_A* 1lgb_A* 2b7y_A* Back     alignment and structure
>2dur_A VIP36;, vesicular integral-membrane protein VIP36; beta sandwich, carbohydrate binding protein, cargo receptor, transport; HET: MAN; 1.65A {Canis lupus familiaris} PDB: 2dup_A 2duq_A* 2duo_A* 2e6v_A* Back     alignment and structure
>1gv9_A P58/ergic-53; lectin, carbohydrate binding; 1.46A {Rattus norvegicus} SCOP: b.29.1.13 PDB: 1r1z_A 3a4u_A 3lcp_A Back     alignment and structure
>1qmo_E Mannose binding lectin, FRIL; crosslink, hematopoietic progenitor, sugar complex; HET: MAN; 3.5A {Dolichos lab lab} SCOP: b.29.1.1 Back     alignment and structure
>1nls_A Concanavalin A; lectin, agglutinin; 0.94A {Canavalia ensiformis} SCOP: b.29.1.1 PDB: 1bxh_A* 1apn_A 1ces_A 1cjp_A* 1c57_A 1cvn_A* 1con_A 1dq1_A 1dq2_A 1dq4_A 1dq5_A 1dq6_A 1enq_A 1enr_A 1ens_A 1gic_A* 1dq0_A 1hqw_A 1gkb_A* 1i3h_A ... Back     alignment and structure
>2a6y_A EMP47P (FORM1); beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.42A {Saccharomyces cerevisiae} SCOP: b.29.1.13 Back     alignment and structure
>2a6z_A EMP47P (FORM2); beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.00A {Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a70_A 2a71_A Back     alignment and structure
>1qmo_A Mannose binding lectin, FRIL; crosslink, hematopoietic progenitor, sugar complex; HET: MAN; 3.5A {Dolichos lab lab} SCOP: b.29.1.1 Back     alignment and structure
>2a6v_A EMP46P; beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.52A {Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a6w_A 2a6x_A Back     alignment and structure
>1nls_A Concanavalin A; lectin, agglutinin; 0.94A {Canavalia ensiformis} SCOP: b.29.1.1 PDB: 1bxh_A* 1apn_A 1ces_A 1cjp_A* 1c57_A 1cvn_A* 1con_A 1dq1_A 1dq2_A 1dq4_A 1dq5_A 1dq6_A 1enq_A 1enr_A 1ens_A 1gic_A* 1dq0_A 1hqw_A 1gkb_A* 1i3h_A ... Back     alignment and structure
>2ltn_B PEA lectin, beta chain; 1.70A {Pisum sativum} SCOP: b.29.1.1 PDB: 1hkd_B 1rin_B* 1ofs_B* 1bqp_B* 1loe_B 1loa_B* 1loc_B* 1lod_B* 1lob_B 1lof_B* 1log_B* 1lof_D* 1les_B* 2b7y_B* 1lgc_B* 1lgb_B* 1len_B 1lem_B 2lal_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 268
g1qmo.1230 b.29.1.1 (A:,E:) Legume lectin {Field bean (Dolich 1e-46
d1hqla_236 b.29.1.1 (A:) Legume lectin {Griffonia simplicifol 7e-45
d1leda_243 b.29.1.1 (A:) Legume lectin {West-central african 3e-44
d1gzca_239 b.29.1.1 (A:) Legume lectin {Cockspur coral tree ( 4e-44
d1g9fa_251 b.29.1.1 (A:) Legume lectin {Soybean (Glycine max) 1e-43
d1v6ia_232 b.29.1.1 (A:) Legume lectin {Peanut (Arachis hypog 2e-43
d1n47a_233 b.29.1.1 (A:) Legume lectin {Hairy vetch (Vicia vi 2e-43
d1g8wa_233 b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also ar 3e-43
d1fnya_237 b.29.1.1 (A:) Legume lectin {Black locust (Robinia 2e-42
d1f9ka_234 b.29.1.1 (A:) Legume lectin {Winged bean (Psophoca 3e-41
d1ukga_241 b.29.1.1 (A:) Legume lectin {Bloodwood tree (Ptero 8e-41
d1qnwa_237 b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus 8e-41
d2d3sa1237 b.29.1.1 (A:1-237) Legume lectin {Winged bean (Pso 1e-40
d1fx5a_240 b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus 1e-40
d1dbna_239 b.29.1.1 (A:) Legume lectin {Maackia amurensis, le 2e-39
d1g7ya_253 b.29.1.1 (A:) Legume lectin {Horse gram (Dolichos 7e-39
g2ltn.1229 b.29.1.1 (A:,B:) Legume lectin {Garden pea (Pisum 3e-38
d1avba_226 b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also ar 1e-37
d1ioaa_228 b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also ar 4e-36
d1nlsa_ 237 b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia 3e-31
d1nlsa_237 b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia 4e-10
d1dhkb_204 b.29.1.1 (B:) Phytohemagglutinin-L, PHA-L, also ar 3e-31
d1gv9a_228 b.29.1.13 (A:) Carbohydrate-recognition domain of 4e-22
d2a6za1221 b.29.1.13 (A:7-227) Emp47p N-terminal domain {Bake 3e-14
d2a6va1218 b.29.1.13 (A:9-226) Emp46p N-terminal domain {Bake 2e-13
>d1hqla_ b.29.1.1 (A:) Legume lectin {Griffonia simplicifolia, lectin I-b4 [TaxId: 3850]} Length = 236 Back     information, alignment and structure
>d1leda_ b.29.1.1 (A:) Legume lectin {West-central african legume (Griffonia simplicifolia) [TaxId: 3850]} Length = 243 Back     information, alignment and structure
>d1gzca_ b.29.1.1 (A:) Legume lectin {Cockspur coral tree (Erythrina crista-galli) [TaxId: 49817]} Length = 239 Back     information, alignment and structure
>d1g9fa_ b.29.1.1 (A:) Legume lectin {Soybean (Glycine max) [TaxId: 3847]} Length = 251 Back     information, alignment and structure
>d1v6ia_ b.29.1.1 (A:) Legume lectin {Peanut (Arachis hypogaea) [TaxId: 3818]} Length = 232 Back     information, alignment and structure
>d1n47a_ b.29.1.1 (A:) Legume lectin {Hairy vetch (Vicia villosa), isolectin b4 [TaxId: 3911]} Length = 233 Back     information, alignment and structure
>d1g8wa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 233 Back     information, alignment and structure
>d1fnya_ b.29.1.1 (A:) Legume lectin {Black locust (Robinia pseudoacacia) [TaxId: 35938]} Length = 237 Back     information, alignment and structure
>d1f9ka_ b.29.1.1 (A:) Legume lectin {Winged bean (Psophocarpus tetragonolobus), acidic lectin [TaxId: 3891]} Length = 234 Back     information, alignment and structure
>d1ukga_ b.29.1.1 (A:) Legume lectin {Bloodwood tree (Pterocarpus angolensis) [TaxId: 182271]} Length = 241 Back     information, alignment and structure
>d1qnwa_ b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus), UEA-II [TaxId: 3902]} Length = 237 Back     information, alignment and structure
>d2d3sa1 b.29.1.1 (A:1-237) Legume lectin {Winged bean (Psophocarpus tetragonolobus), basic agglutinin [TaxId: 3891]} Length = 237 Back     information, alignment and structure
>d1fx5a_ b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus), UEA-I [TaxId: 3902]} Length = 240 Back     information, alignment and structure
>d1dbna_ b.29.1.1 (A:) Legume lectin {Maackia amurensis, leukoagglutinin [TaxId: 37501]} Length = 239 Back     information, alignment and structure
>d1g7ya_ b.29.1.1 (A:) Legume lectin {Horse gram (Dolichos biflorus), different isoforms [TaxId: 3840]} Length = 253 Back     information, alignment and structure
>d1avba_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 226 Back     information, alignment and structure
>d1ioaa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris), G02771, arcelin-5a [TaxId: 3885]} Length = 228 Back     information, alignment and structure
>d1nlsa_ b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Length = 237 Back     information, alignment and structure
>d1nlsa_ b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Length = 237 Back     information, alignment and structure
>d1dhkb_ b.29.1.1 (B:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 204 Back     information, alignment and structure
>d1gv9a_ b.29.1.13 (A:) Carbohydrate-recognition domain of P58/ERGIC-53 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 228 Back     information, alignment and structure
>d2a6za1 b.29.1.13 (A:7-227) Emp47p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221 Back     information, alignment and structure
>d2a6va1 b.29.1.13 (A:9-226) Emp46p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 218 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
d1hqla_236 Legume lectin {Griffonia simplicifolia, lectin I-b 100.0
d1g9fa_251 Legume lectin {Soybean (Glycine max) [TaxId: 3847] 100.0
d1leda_243 Legume lectin {West-central african legume (Griffo 100.0
d1gzca_239 Legume lectin {Cockspur coral tree (Erythrina cris 100.0
d1fx5a_240 Legume lectin {Furze (Ulex europaeus), UEA-I [TaxI 100.0
d1qnwa_237 Legume lectin {Furze (Ulex europaeus), UEA-II [Tax 100.0
d2d3sa1237 Legume lectin {Winged bean (Psophocarpus tetragono 100.0
d1n47a_233 Legume lectin {Hairy vetch (Vicia villosa), isolec 100.0
d1g8wa_233 Phytohemagglutinin-L, PHA-L, also arcelin {Kidney 100.0
d1dbna_239 Legume lectin {Maackia amurensis, leukoagglutinin 100.0
d1f9ka_234 Legume lectin {Winged bean (Psophocarpus tetragono 100.0
d1g7ya_253 Legume lectin {Horse gram (Dolichos biflorus), dif 100.0
d1fnya_237 Legume lectin {Black locust (Robinia pseudoacacia) 100.0
g1qmo.1230 Legume lectin {Field bean (Dolichos lablab), Fril 100.0
d1v6ia_232 Legume lectin {Peanut (Arachis hypogaea) [TaxId: 3 100.0
g2ltn.1229 Legume lectin {Garden pea (Pisum sativum) [TaxId: 100.0
d1ukga_241 Legume lectin {Bloodwood tree (Pterocarpus angolen 100.0
d1ioaa_228 Phytohemagglutinin-L, PHA-L, also arcelin {Kidney 100.0
d1avba_226 Phytohemagglutinin-L, PHA-L, also arcelin {Kidney 100.0
d1dhkb_204 Phytohemagglutinin-L, PHA-L, also arcelin {Kidney 100.0
d1gv9a_228 Carbohydrate-recognition domain of P58/ERGIC-53 {R 100.0
d1nlsa_ 237 Concanavalin A {Jack bean (Canavalia ensiformis) [ 99.98
d2a6za1221 Emp47p N-terminal domain {Baker's yeast (Saccharom 99.94
d2a6va1218 Emp46p N-terminal domain {Baker's yeast (Saccharom 99.94
d1nlsa_237 Concanavalin A {Jack bean (Canavalia ensiformis) [ 99.84
d1dyka2185 Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 86.05
>d1hqla_ b.29.1.1 (A:) Legume lectin {Griffonia simplicifolia, lectin I-b4 [TaxId: 3850]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Legume lectins
domain: Legume lectin
species: Griffonia simplicifolia, lectin I-b4 [TaxId: 3850]

Probab=100.00  E-value=8.9e-56  Score=389.14  Aligned_cols=216  Identities=29%  Similarity=0.464  Sum_probs=188.1

Q ss_pred             ceeEEcCCCCCCCCCccccccccCeEEecceEeCCCCC--CCC------CCCceEEEEeccceeccc------CCeEEEE
Q 024380           24 PISFSFPSFAKDSCDNKTLICYGAIESSGALSITPGPP--PNL------PIRKVGRVLYGKPLSLQR------SFIDTTI   89 (268)
Q Consensus        24 ~~~F~f~~F~~~~~~~~~~~~~~~l~l~G~A~~~~~~i--T~~------~~~~~G~~~y~~Pi~l~~------~sFst~F   89 (268)
                      +++|+|++|..+..        .+|.|+|+|.+..+.+  |+.      .+.++|||+|++||++|+      ++|+|+|
T Consensus         1 ~~sF~f~~F~~~~~--------~~l~l~G~A~~~~~~l~LT~~~~~~~~~~~s~Gra~y~~Pv~l~~~~t~~~asFsT~F   72 (236)
T d1hqla_           1 SVSFTFPNFWSDVE--------DSIIFQGDANTTAGTLQLCKTNQYGTPLQWSAGRALYSDPVQLWDNKTESVASFYTEF   72 (236)
T ss_dssp             CCEEEESCSCSCGG--------GTEEEEETCEEETTEEECSCBCTTSCBCSSCEEEEEESSCEECCCSTTCCCCEEEEEE
T ss_pred             CEEEEeCCCCCCCc--------CCEEEeccEEecCCEEEEecCCCCCcccccceEEEEECCCEEeecCCCCceeEEEEEE
Confidence            47999999987542        6899999999976555  553      367899999999999998      7899999


Q ss_pred             EEEEeecccCCCCCCCceEEEEecCCCCCCCCCCCccccCCCC----CCCCCCcEEEEEeccCc-CCCCCCCCCeeEEec
Q 024380           90 TIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGVGEYLGLQSS----PGDKFPPLAVELDTCLN-KNLNDPDDNHIGIDI  164 (268)
Q Consensus        90 ~F~I~~~~~~~~~~gDGlAF~l~~~~~~~~~~~~Gg~lGl~~~----~~~~~~~vAVEFDT~~N-~~~~Dp~~~HVgI~~  164 (268)
                      +|+|..  . ...+||||||+|+|..  .+.+..|++||+++.    +...++.+|||||||+| ++ +||+.+||||++
T Consensus        73 ~F~i~~--~-~~~~gDGlAFvl~p~~--~~~~~~G~~lGl~~~~~~~~~~~~~~vAVEFDT~~n~~~-~D~~~nHIgIdv  146 (236)
T d1hqla_          73 TFFLKI--T-GNGPADGLAFFLAPPD--SDVKDAGEYLGLFNKSTATQPSKNQVVAVEFDTWTNPNF-PEPSYRHIGINV  146 (236)
T ss_dssp             EEEEEE--C-SSCCCCEEEEEEECTT--CCCCCCGGGTTTSCTTTTTCGGGCCCEEEEEECSCCSSS-CCCSSCEEEEEE
T ss_pred             EEEEeC--C-CCCCCceEEEEEeCCC--CCCCCCccccccccccccCCcccCceEEEEeeCccCCCC-CCCCCCEEEEEc
Confidence            999987  4 5678999999999976  344678999999876    12357899999999999 76 799999999999


Q ss_pred             CCCcccccccccccccCCCceEEEEEEEecCCcEEEEEEEecCCCceeEEEEeeeCCCCCCCceEEEEEeecCCc-ccce
Q 024380          165 NGIESNPVNSLLDVDLKSGRAIQVRIYYNPDFGQLSIYAAYSGETLVKVIEKPINLSDIIPTPVYVGFTAATGDF-LESH  243 (268)
Q Consensus       165 ns~~s~~~~~~~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~~~~~~~~ls~~idL~~~l~~~~yvGFSAsTG~~-~~~h  243 (268)
                      |++.+..+.++...+|++|+.++|||+||+.+++|+|+|++. ++.+|+|++.+||+++|+++||||||||||+. .+.|
T Consensus       147 ns~~s~~~~~~~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~-~~~~~~ls~~vdL~~~l~~~v~vGFSasTG~~~~~~h  225 (236)
T d1hqla_         147 NSIVSVATKRWEDSDIFSGKIATARISYDGSAEILTVVLSYP-DGSDYILSHSVDMRQNLPESVRVGISASTGNNQFLTV  225 (236)
T ss_dssp             SSSSCSEEEECCHHHHTSCSCEEEEEEEETTTTEEEEEEEET-TTEEEEEEEECCGGGTSCSEEEEEEEEECCSCCCEEE
T ss_pred             CCcccccccccccccccCCCEEEEEEEEeCCCcEEEEEEecC-CCCCeeEEEEeCHHHhCCCcEEEEEEeECCCCCceEE
Confidence            999998888776678999999999999999999999999874 57789999999999999999999999999975 6789


Q ss_pred             EEEEEEEeeCC
Q 024380          244 EVINWTFNSFP  254 (268)
Q Consensus       244 ~I~sWsF~s~~  254 (268)
                      +|++|+|++.+
T Consensus       226 ~I~sWsF~s~l  236 (236)
T d1hqla_         226 YILSWRFSSNL  236 (236)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEEeEeEecC
Confidence            99999999853
>d1g9fa_ b.29.1.1 (A:) Legume lectin {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d1leda_ b.29.1.1 (A:) Legume lectin {West-central african legume (Griffonia simplicifolia) [TaxId: 3850]} Back     information, alignment and structure
>d1gzca_ b.29.1.1 (A:) Legume lectin {Cockspur coral tree (Erythrina crista-galli) [TaxId: 49817]} Back     information, alignment and structure
>d1fx5a_ b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus), UEA-I [TaxId: 3902]} Back     information, alignment and structure
>d1qnwa_ b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus), UEA-II [TaxId: 3902]} Back     information, alignment and structure
>d2d3sa1 b.29.1.1 (A:1-237) Legume lectin {Winged bean (Psophocarpus tetragonolobus), basic agglutinin [TaxId: 3891]} Back     information, alignment and structure
>d1n47a_ b.29.1.1 (A:) Legume lectin {Hairy vetch (Vicia villosa), isolectin b4 [TaxId: 3911]} Back     information, alignment and structure
>d1g8wa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1dbna_ b.29.1.1 (A:) Legume lectin {Maackia amurensis, leukoagglutinin [TaxId: 37501]} Back     information, alignment and structure
>d1f9ka_ b.29.1.1 (A:) Legume lectin {Winged bean (Psophocarpus tetragonolobus), acidic lectin [TaxId: 3891]} Back     information, alignment and structure
>d1g7ya_ b.29.1.1 (A:) Legume lectin {Horse gram (Dolichos biflorus), different isoforms [TaxId: 3840]} Back     information, alignment and structure
>d1fnya_ b.29.1.1 (A:) Legume lectin {Black locust (Robinia pseudoacacia) [TaxId: 35938]} Back     information, alignment and structure
>d1v6ia_ b.29.1.1 (A:) Legume lectin {Peanut (Arachis hypogaea) [TaxId: 3818]} Back     information, alignment and structure
>d1ukga_ b.29.1.1 (A:) Legume lectin {Bloodwood tree (Pterocarpus angolensis) [TaxId: 182271]} Back     information, alignment and structure
>d1ioaa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris), G02771, arcelin-5a [TaxId: 3885]} Back     information, alignment and structure
>d1avba_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1dhkb_ b.29.1.1 (B:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1gv9a_ b.29.1.13 (A:) Carbohydrate-recognition domain of P58/ERGIC-53 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1nlsa_ b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Back     information, alignment and structure
>d2a6za1 b.29.1.13 (A:7-227) Emp47p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2a6va1 b.29.1.13 (A:9-226) Emp46p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlsa_ b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Back     information, alignment and structure
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure