Citrus Sinensis ID: 024410

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
MQTEARVGVVVEGGQRGLSSGNGSVSVDKITLQQQQKQMLQNQSQIGTISQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSDTATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTNVIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQNDSPVLVSLACGSLSGIASSTGE
cccHHHHHHHHHcccccccccHHHHHHHHccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccHHHHcHHHHHHHHHHHHcccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccc
ccHHHHHHHHHHccHHHHHcccHHHHHHHHcHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccHHHHcccHHHHHHHccHHHEEEHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHEccccHHHHHHccHHHEEHHHHHHHHHHHHccccccccHHHHHHHHHHHcHHHHHcc
MQTEARVGVVVeggqrglssgngsvsvdKITLQQQQKQMLQNQSQIGTISQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSDTATLRKASIWREASRIISEEGFRAFWKGNLVTIAhrlpyssvnfYAYEHYKKLLHAIPvvesqgenmssDLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTNVIYYRGICHALQTICRDEGIWGLYKGLGatllgvgpsiAISFSVYETLRSFWQsrrqndspvLVSLACGslsgiasstge
mqtearvgvvveggqrglssgngSVSVDKITLQQQQKQMLQNQSQIGTISQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSDTATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTNVIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQNDSPVLVSLAcgslsgiasstge
MQTEArvgvvveggqrgLSSGNGSVSVDKITLqqqqkqmlqnqsqIGTISQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSDTATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTNVIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQNDSPVLVSLACGSLSGIASSTGE
*********************************************IGTISQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSDTATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTNVIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQNDSPVLVSLACG***********
***EARVGVVVEGGQRGLSSGNGSVSVDKITLQQQQKQMLQNQSQIGTISQLLAGGVAGALSKTCTAPLARLTILFQVQG***********SIWREASRIISEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTNVIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQNDSPVLVSLACGSLSGIASST**
MQTEARVGVVVEGGQRGLSSGNGSVSVDKITLQ**********SQIGTISQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSDTATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTNVIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQNDSPVLVSLACGSLSGIASSTGE
*QTEARVGVVVEGGQRGLSSGNGSVSVDKITLQQQQKQMLQNQSQIGTISQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSDTATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTNVIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQNDSPVLVSLACGSLSGIASSTGE
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQTEARVGVVVEGGQRGLSSGNGSVSVDKITLQQQQKQMLQNQSQIGTISQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSDTATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTNVIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQNDSPVLVSLACGSLSGIASSTGE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query268 2.2.26 [Sep-21-2011]
Q6NUK1477 Calcium-binding mitochond yes no 0.731 0.410 0.408 1e-35
Q54MZ4434 Mitochondrial substrate c yes no 0.847 0.523 0.369 1e-35
Q8BMD8475 Calcium-binding mitochond yes no 0.720 0.406 0.406 5e-34
A5PJZ1477 Calcium-binding mitochond yes no 0.731 0.410 0.403 8e-34
O18757475 Calcium-binding mitochond yes no 0.723 0.408 0.399 1e-32
O04619352 Mitochondrial adenine nuc no no 0.787 0.599 0.372 3e-32
Q5XHA0473 Calcium-binding mitochond no no 0.731 0.414 0.369 4e-31
Q7T0U6473 Calcium-binding mitochond N/A no 0.731 0.414 0.364 6e-31
Q7ZYD5514 Calcium-binding mitochond N/A no 0.805 0.420 0.351 7e-31
Q7ZY36473 Calcium-binding mitochond N/A no 0.731 0.414 0.359 1e-30
>sp|Q6NUK1|SCMC1_HUMAN Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2 Back     alignment and function desciption
 Score =  150 bits (379), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 123/213 (57%), Gaps = 17/213 (7%)

Query: 51  QLLAGGVAGALSKTCTAPLARLTILFQVQGMHSDTATLRKASIWREASRIISEEGFRAFW 110
           QLLAGG+AGA+S+T TAPL RL I+ QV G  SD     K +I+    +++ E G R+ W
Sbjct: 197 QLLAGGIAGAVSRTSTAPLDRLKIMMQVHGSKSD-----KMNIFGGFRQMVKEGGIRSLW 251

Query: 111 KGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLAGITAA 170
           +GN   +    P ++V F+AYE YKKLL        +G+ + +  F  F+SG +AG TA 
Sbjct: 252 RGNGTNVIKIAPETAVKFWAYEQYKKLLT------EEGQKIGT--FERFISGSMAGATAQ 303

Query: 171 SVTYPLDLVRTRLAAQTNVIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPSIAISF 230
           +  YP+++++TRLA       Y GI    + I + EG+   YKG    LLG+ P   I  
Sbjct: 304 TFIYPMEVMKTRLAV-GKTGQYSGIYDCAKKILKHEGLGAFYKGYVPNLLGIIPYAGIDL 362

Query: 231 SVYETLRSFWQSRRQNDS--P-VLVSLACGSLS 260
           +VYE L+S+W      DS  P V+V L CG+LS
Sbjct: 363 AVYELLKSYWLDNFAKDSVNPGVMVLLGCGALS 395
Calcium-dependent mitochondrial solute carrier. Mitochondrial solute carriers shuttle metabolites, nucleotides, and cofactors through the mitochondrial inner membrane. May act as a ATP-Mg/Pi exchanger that mediates the transport of Mg-ATP in exchange for phosphate, catalyzing the net uptake or efflux of adenine nucleotides into or from the mitochondria.
Homo sapiens (taxid: 9606)
>sp|Q54MZ4|MCFB_DICDI Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1 Back     alignment and function description
>sp|Q8BMD8|SCMC1_MOUSE Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Mus musculus GN=Slc25a24 PE=2 SV=1 Back     alignment and function description
>sp|A5PJZ1|SCMC1_BOVIN Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Bos taurus GN=SLC25A24 PE=2 SV=1 Back     alignment and function description
>sp|O18757|SCMC1_RABIT Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Oryctolagus cuniculus GN=SLC25A24 PE=1 SV=1 Back     alignment and function description
>sp|O04619|ADNT1_ARATH Mitochondrial adenine nucleotide transporter ADNT1 OS=Arabidopsis thaliana GN=ADNT1 PE=2 SV=1 Back     alignment and function description
>sp|Q5XHA0|SCMC1_XENTR Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Xenopus tropicalis GN=slc25a24 PE=2 SV=1 Back     alignment and function description
>sp|Q7T0U6|SCM1B_XENLA Calcium-binding mitochondrial carrier protein SCaMC-1-B OS=Xenopus laevis GN=slc25a24-b PE=2 SV=1 Back     alignment and function description
>sp|Q7ZYD5|SCMC2_XENLA Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus laevis GN=slc25a25 PE=2 SV=1 Back     alignment and function description
>sp|Q7ZY36|SCM1A_XENLA Calcium-binding mitochondrial carrier protein SCaMC-1-A OS=Xenopus laevis GN=slc25a24-a PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
296086165277 unnamed protein product [Vitis vinifera] 0.988 0.956 0.813 1e-118
225449356346 PREDICTED: mitochondrial substrate carri 0.988 0.765 0.813 1e-118
449464462348 PREDICTED: mitochondrial substrate carri 0.992 0.764 0.783 1e-112
224109442337 predicted protein [Populus trichocarpa] 0.947 0.753 0.788 1e-111
449448592349 PREDICTED: mitochondrial substrate carri 0.988 0.759 0.759 1e-111
449516015349 PREDICTED: mitochondrial substrate carri 0.988 0.759 0.755 1e-110
118481007267 unknown [Populus trichocarpa] 0.955 0.958 0.771 1e-110
224101051337 predicted protein [Populus trichocarpa] 0.947 0.753 0.776 1e-109
255566518248 Mitochondrial deoxynucleotide carrier, p 0.925 1.0 0.761 1e-108
225440510336 PREDICTED: mitochondrial substrate carri 0.955 0.761 0.752 1e-106
>gi|296086165|emb|CBI31606.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/268 (81%), Positives = 234/268 (87%), Gaps = 3/268 (1%)

Query: 1   MQTEARVGVVVEGGQRGLSSGNGSVSVDKIT--LQQQQKQMLQNQSQIGTISQLLAGGVA 58
           MQTEARVGVVVEGGQR L+SG+G V+VD     L QQQK + Q QSQIGTI QLLAGG+A
Sbjct: 1   MQTEARVGVVVEGGQRALNSGHGGVAVDGTARKLAQQQKSLHQ-QSQIGTIPQLLAGGIA 59

Query: 59  GALSKTCTAPLARLTILFQVQGMHSDTATLRKASIWREASRIISEEGFRAFWKGNLVTIA 118
           GALSKTCTAPLARLTILFQVQGMHSD ATL KASIW+EASRII EEGFRAFWKGNLVTIA
Sbjct: 60  GALSKTCTAPLARLTILFQVQGMHSDVATLTKASIWQEASRIIGEEGFRAFWKGNLVTIA 119

Query: 119 HRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLAGITAASVTYPLDL 178
           HRLPYSSV+FYAYE YK +LH +P +ES   N S+DL VHFV+GGLAG+TAAS TYPLDL
Sbjct: 120 HRLPYSSVSFYAYERYKNILHLVPGLESHKRNTSADLGVHFVAGGLAGLTAASATYPLDL 179

Query: 179 VRTRLAAQTNVIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPSIAISFSVYETLRS 238
           VRTRLAAQT VIYYRGI H LQTI R+EGIWGLYKGLGATLLGVGPSIAI+FSVYETLRS
Sbjct: 180 VRTRLAAQTKVIYYRGIGHTLQTIVREEGIWGLYKGLGATLLGVGPSIAINFSVYETLRS 239

Query: 239 FWQSRRQNDSPVLVSLACGSLSGIASST 266
            W S+R NDS VLVSL CGSLSGIASST
Sbjct: 240 SWHSQRPNDSTVLVSLTCGSLSGIASST 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225449356|ref|XP_002282149.1| PREDICTED: mitochondrial substrate carrier family protein B isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449464462|ref|XP_004149948.1| PREDICTED: mitochondrial substrate carrier family protein B-like [Cucumis sativus] gi|449513191|ref|XP_004164257.1| PREDICTED: mitochondrial substrate carrier family protein B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224109442|ref|XP_002315196.1| predicted protein [Populus trichocarpa] gi|222864236|gb|EEF01367.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449448592|ref|XP_004142050.1| PREDICTED: mitochondrial substrate carrier family protein B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449516015|ref|XP_004165043.1| PREDICTED: mitochondrial substrate carrier family protein B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|118481007|gb|ABK92457.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224101051|ref|XP_002312122.1| predicted protein [Populus trichocarpa] gi|222851942|gb|EEE89489.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255566518|ref|XP_002524244.1| Mitochondrial deoxynucleotide carrier, putative [Ricinus communis] gi|223536521|gb|EEF38168.1| Mitochondrial deoxynucleotide carrier, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225440510|ref|XP_002272651.1| PREDICTED: mitochondrial substrate carrier family protein B [Vitis vinifera] gi|297740295|emb|CBI30477.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
TAIR|locus:2078951332 AT3G55640 [Arabidopsis thalian 0.824 0.665 0.764 3.7e-87
TAIR|locus:2084460365 AT3G53940 [Arabidopsis thalian 0.820 0.602 0.722 2.1e-84
TAIR|locus:2065598337 AT2G37890 [Arabidopsis thalian 0.824 0.655 0.674 1.6e-77
UNIPROTKB|Q6NUK1477 SLC25A24 "Calcium-binding mito 0.727 0.408 0.411 3.6e-34
DICTYBASE|DDB_G0285599434 mcfB "calcium-dependent mitoch 0.772 0.476 0.412 1.5e-33
UNIPROTKB|F6Q4L6416 SLC25A24 "Uncharacterized prot 0.727 0.468 0.406 2.5e-33
UNIPROTKB|F1PEX8397 SLC25A24 "Uncharacterized prot 0.727 0.491 0.401 3.2e-33
MGI|MGI:1917160475 Slc25a24 "solute carrier famil 0.720 0.406 0.406 8.5e-33
UNIPROTKB|A5PJZ1477 SLC25A24 "Calcium-binding mito 0.727 0.408 0.406 1.1e-32
RGD|1311982475 Slc25a24 "solute carrier famil 0.720 0.406 0.401 2.9e-32
TAIR|locus:2078951 AT3G55640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
 Identities = 169/221 (76%), Positives = 194/221 (87%)

Query:    46 IGTISQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSDTATLRKASIWREASRIISEEG 105
             I + SQLLAGG+AGA SKTCTAPL+RLTILFQVQGMH++ A LRK SI  EASRI++EEG
Sbjct:    32 IESASQLLAGGLAGAFSKTCTAPLSRLTILFQVQGMHTNAAALRKPSILHEASRILNEEG 91

Query:   106 FRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLA 165
              +AFWKGNLVTIAHRLPYSSVNFYAYEHYKK ++ +  +E+  E +SS+LFVHFV+GGLA
Sbjct:    92 LKAFWKGNLVTIAHRLPYSSVNFYAYEHYKKFMYMVTGMENHKEGISSNLFVHFVAGGLA 151

Query:   166 GITAASVTYPLDLVRTRLAAQTNVIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPS 225
             GITAAS TYPLDLVRTRLAAQT VIYY GI H L++I  DEGI GLYKGLG TL+GVGPS
Sbjct:   152 GITAASATYPLDLVRTRLAAQTKVIYYSGIWHTLRSITTDEGILGLYKGLGTTLVGVGPS 211

Query:   226 IAISFSVYETLRSFWQSRRQNDSPVLVSLACGSLSGIASST 266
             IAISFSVYE+LRS+W+S R +DSP++VSLACGSLSGIASST
Sbjct:   212 IAISFSVYESLRSYWRSTRPHDSPIMVSLACGSLSGIASST 252
GO:0005215 "transporter activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM
GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISS
GO:0006810 "transport" evidence=IEA;ISS
GO:0006839 "mitochondrial transport" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2084460 AT3G53940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065598 AT2G37890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6NUK1 SLC25A24 "Calcium-binding mitochondrial carrier protein SCaMC-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0285599 mcfB "calcium-dependent mitochondrial substrate carrier" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F6Q4L6 SLC25A24 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PEX8 SLC25A24 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1917160 Slc25a24 "solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A5PJZ1 SLC25A24 "Calcium-binding mitochondrial carrier protein SCaMC-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1311982 Slc25a24 "solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018399001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (346 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 2e-25
PTZ00169300 PTZ00169, PTZ00169, ADP/ATP transporter on adenyla 3e-21
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 3e-19
PTZ00169300 PTZ00169, PTZ00169, ADP/ATP transporter on adenyla 2e-07
PTZ00168 259 PTZ00168, PTZ00168, mitochondrial carrier protein; 8e-06
PTZ00168259 PTZ00168, PTZ00168, mitochondrial carrier protein; 0.003
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information 
 Score = 96.2 bits (240), Expect = 2e-25
 Identities = 40/91 (43%), Positives = 54/91 (59%), Gaps = 2/91 (2%)

Query: 155 LFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTNV--IYYRGICHALQTICRDEGIWGLY 212
                ++GG+AG  AA+VTYPLD+V+TRL +        Y+GI    + I ++EGI GLY
Sbjct: 5   FLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLY 64

Query: 213 KGLGATLLGVGPSIAISFSVYETLRSFWQSR 243
           KGL   LL V P+ AI F  YETL+     +
Sbjct: 65  KGLLPNLLRVAPAAAIYFGTYETLKKLLLKK 95

Length = 96
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional Back     alignment and domain information
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 268
KOG0764299 consensus Mitochondrial FAD carrier protein [Energ 100.0
KOG0752320 consensus Mitochondrial solute carrier protein [En 100.0
KOG0757319 consensus Mitochondrial carrier protein - Rim2p/Mr 100.0
KOG0753317 consensus Mitochondrial fatty acid anion carrier p 100.0
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 100.0
KOG0758297 consensus Mitochondrial carnitine-acylcarnitine ca 100.0
KOG0760302 consensus Mitochondrial carrier protein MRS3/4 [En 100.0
KOG0762311 consensus Mitochondrial carrier protein [Energy pr 100.0
KOG0752320 consensus Mitochondrial solute carrier protein [En 100.0
KOG0768323 consensus Mitochondrial carrier protein PET8 [Ener 100.0
KOG0759286 consensus Mitochondrial oxoglutarate/malate carrie 100.0
KOG0764299 consensus Mitochondrial FAD carrier protein [Energ 100.0
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 100.0
PTZ00168259 mitochondrial carrier protein; Provisional 100.0
KOG0754294 consensus Mitochondrial oxodicarboxylate carrier p 100.0
KOG0760302 consensus Mitochondrial carrier protein MRS3/4 [En 100.0
KOG0765333 consensus Predicted mitochondrial carrier protein 100.0
KOG0753317 consensus Mitochondrial fatty acid anion carrier p 100.0
KOG0761361 consensus Mitochondrial carrier protein CGI-69 [En 100.0
KOG0751694 consensus Mitochondrial aspartate/glutamate carrie 100.0
KOG0754294 consensus Mitochondrial oxodicarboxylate carrier p 100.0
KOG0758297 consensus Mitochondrial carnitine-acylcarnitine ca 100.0
KOG0757319 consensus Mitochondrial carrier protein - Rim2p/Mr 100.0
PTZ00168259 mitochondrial carrier protein; Provisional 100.0
KOG0756299 consensus Mitochondrial tricarboxylate/dicarboxyla 100.0
KOG0762311 consensus Mitochondrial carrier protein [Energy pr 100.0
KOG0759286 consensus Mitochondrial oxoglutarate/malate carrie 100.0
KOG0036463 consensus Predicted mitochondrial carrier protein 100.0
KOG0761361 consensus Mitochondrial carrier protein CGI-69 [En 100.0
KOG0749298 consensus Mitochondrial ADP/ATP carrier proteins [ 100.0
KOG0763301 consensus Mitochondrial ornithine transporter [Ene 100.0
KOG0766297 consensus Predicted mitochondrial carrier protein 100.0
KOG0770353 consensus Predicted mitochondrial carrier protein 100.0
KOG0755320 consensus Mitochondrial oxaloacetate carrier prote 99.98
KOG0770353 consensus Predicted mitochondrial carrier protein 99.98
KOG0769308 consensus Predicted mitochondrial carrier protein 99.97
KOG0750304 consensus Mitochondrial solute carrier protein [En 99.97
KOG0767333 consensus Mitochondrial phosphate carrier protein 99.97
KOG0755320 consensus Mitochondrial oxaloacetate carrier prote 99.97
KOG0768323 consensus Mitochondrial carrier protein PET8 [Ener 99.97
KOG0751 694 consensus Mitochondrial aspartate/glutamate carrie 99.97
KOG0769308 consensus Predicted mitochondrial carrier protein 99.97
KOG0766297 consensus Predicted mitochondrial carrier protein 99.96
KOG0767333 consensus Mitochondrial phosphate carrier protein 99.96
KOG0765333 consensus Predicted mitochondrial carrier protein 99.96
KOG0763301 consensus Mitochondrial ornithine transporter [Ene 99.95
KOG0036463 consensus Predicted mitochondrial carrier protein 99.95
KOG0749298 consensus Mitochondrial ADP/ATP carrier proteins [ 99.95
KOG0750304 consensus Mitochondrial solute carrier protein [En 99.94
KOG0756299 consensus Mitochondrial tricarboxylate/dicarboxyla 99.94
KOG1519297 consensus Predicted mitochondrial carrier protein 99.82
KOG2745321 consensus Mitochondrial carrier protein [General f 99.8
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 99.78
KOG2745321 consensus Mitochondrial carrier protein [General f 99.78
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 99.77
KOG1519297 consensus Predicted mitochondrial carrier protein 99.75
KOG2954427 consensus Mitochondrial carrier protein [General f 99.55
KOG2954427 consensus Mitochondrial carrier protein [General f 98.65
>KOG0764 consensus Mitochondrial FAD carrier protein [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-47  Score=304.97  Aligned_cols=236  Identities=24%  Similarity=0.379  Sum_probs=203.9

Q ss_pred             chhhhhheecchhhhcccCCccceeeec--------hHHHHHHHhhcCC--CchhHHHHHHHHHHHHHHHhhccchHHHH
Q 024410            4 EARVGVVVEGGQRGLSSGNGSVSVDKIT--------LQQQQKQMLQNQS--QIGTISQLLAGGVAGALSKTCTAPLARLT   73 (268)
Q Consensus         4 ~~~~~i~~~~G~~gly~G~~~~~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~~~g~~a~~~~~~i~~P~e~ik   73 (268)
                      ++.+.|++.||++|||||++|+++++.+        |+..+....+..+  ..++..++.+++.||+++.++++|++++|
T Consensus        51 ~~~~tI~r~eG~rGLY~Gl~P~v~G~~~sWgiYF~~Y~~~K~~~~~~~~~~~l~~~~~l~sa~~AGa~t~~lTNPIWVvK  130 (299)
T KOG0764|consen   51 GALKTIFRSEGLRGLYRGLSPNVLGSAPSWGLYFFFYDFLKSFITEGFNSGLLSVLANLSSAAEAGAATTILTNPIWVVK  130 (299)
T ss_pred             HHHHHHHHhhhHHHHhccCcHHHHhchhhHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHhhhHHHHHhcCCeEEEe
Confidence            5778999999999999999999998763        3444444444333  34899999999999999999999999999


Q ss_pred             HHHHhcCCcCCccccccchHHHHHHHHHHhhhhhhhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhcCccccccCCCCch
Q 024410           74 ILFQVQGMHSDTATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSS  153 (268)
Q Consensus        74 ~~~q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (268)
                      +|+++|......  .+|+++++++++|+++||++|||+|+.|.++ .+.+.+++|.+||.+|..+.+....+   .+..+
T Consensus       131 TRL~~Q~~~~~~--~~Y~~~f~a~rki~k~EG~rgLY~GlVP~L~-GvshgAiQF~~YE~lK~~~~~~~~~~---~d~~l  204 (299)
T KOG0764|consen  131 TRLMLQSKNVQS--TAYKGMFDALRKIYKEEGFRGLYKGLVPGLL-GVSHGAIQFPAYEELKLRKNRKQGRS---TDNHL  204 (299)
T ss_pred             ehhhhhcccccc--cccccHHHHHHHHHHHHhHHHHHhhhhhHhh-hhchhhhhhhhHHHHHHHHHHhcCCC---cccch
Confidence            999999876543  5799999999999999999999999999999 67799999999999999986443322   23234


Q ss_pred             hHHHHHHhhhHHHHHHHHhhccHHHHHHHHhhccCccccccHHHHHHHHHHhhcccccccchhhhhhhhhhhHHHHHHHH
Q 024410          154 DLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTNVIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPSIAISFSVY  233 (268)
Q Consensus       154 ~~~~~~~~g~~a~~~~~~v~~P~d~ik~r~q~~~~~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~l~~~~~~~~~~~~~y  233 (268)
                      .....+..++++.++++.++||++++|+|||.++....|++.++++++++|+||++|||+|+.++++|.+|.+.++|.+|
T Consensus       205 ~n~~~i~~as~SKv~Ast~TYP~qVlRtRLQ~~~~~~~~~~~~~lIk~t~r~eG~~GfYkG~~~nLvR~vPA~~ITF~vy  284 (299)
T KOG0764|consen  205 SNLDYIALASLSKVFASTLTYPHQVLRTRLQDQSDNPRYRGVFDLIKKTWRNEGFRGFYKGLATNLVRTVPAACITFLVY  284 (299)
T ss_pred             hhHHHHHHHHHHHHHHHHhcchHHHHHHHHHhcccCcccccHHHHHHHHHHHhchhhHHHHhHHHHhhccccceeeeehH
Confidence            44556666669999999999999999999999977779999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCC
Q 024410          234 ETLRSFWQSRRQ  245 (268)
Q Consensus       234 e~~~~~~~~~~~  245 (268)
                      |.+++++..+.+
T Consensus       285 Env~~~L~~~~~  296 (299)
T KOG0764|consen  285 ENVKHFLVTHRT  296 (299)
T ss_pred             HHHHHHHhcccc
Confidence            999999877654

>KOG0752 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0757 consensus Mitochondrial carrier protein - Rim2p/Mrs12p [Energy production and conversion] Back     alignment and domain information
>KOG0753 consensus Mitochondrial fatty acid anion carrier protein/Uncoupling protein [Energy production and conversion] Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0758 consensus Mitochondrial carnitine-acylcarnitine carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0760 consensus Mitochondrial carrier protein MRS3/4 [Energy production and conversion] Back     alignment and domain information
>KOG0762 consensus Mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0752 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0768 consensus Mitochondrial carrier protein PET8 [Energy production and conversion] Back     alignment and domain information
>KOG0759 consensus Mitochondrial oxoglutarate/malate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0764 consensus Mitochondrial FAD carrier protein [Energy production and conversion] Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0754 consensus Mitochondrial oxodicarboxylate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0760 consensus Mitochondrial carrier protein MRS3/4 [Energy production and conversion] Back     alignment and domain information
>KOG0765 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0753 consensus Mitochondrial fatty acid anion carrier protein/Uncoupling protein [Energy production and conversion] Back     alignment and domain information
>KOG0761 consensus Mitochondrial carrier protein CGI-69 [Energy production and conversion] Back     alignment and domain information
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion] Back     alignment and domain information
>KOG0754 consensus Mitochondrial oxodicarboxylate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0758 consensus Mitochondrial carnitine-acylcarnitine carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0757 consensus Mitochondrial carrier protein - Rim2p/Mrs12p [Energy production and conversion] Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0756 consensus Mitochondrial tricarboxylate/dicarboxylate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0762 consensus Mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0759 consensus Mitochondrial oxoglutarate/malate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0761 consensus Mitochondrial carrier protein CGI-69 [Energy production and conversion] Back     alignment and domain information
>KOG0749 consensus Mitochondrial ADP/ATP carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0763 consensus Mitochondrial ornithine transporter [Energy production and conversion] Back     alignment and domain information
>KOG0766 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0770 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0755 consensus Mitochondrial oxaloacetate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0770 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0769 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0750 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0767 consensus Mitochondrial phosphate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0755 consensus Mitochondrial oxaloacetate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0768 consensus Mitochondrial carrier protein PET8 [Energy production and conversion] Back     alignment and domain information
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion] Back     alignment and domain information
>KOG0769 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0766 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0767 consensus Mitochondrial phosphate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0765 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0763 consensus Mitochondrial ornithine transporter [Energy production and conversion] Back     alignment and domain information
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0749 consensus Mitochondrial ADP/ATP carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0750 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0756 consensus Mitochondrial tricarboxylate/dicarboxylate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG1519 consensus Predicted mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2745 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>KOG2745 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>KOG1519 consensus Predicted mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2954 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2954 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
1okc_A297 Structure Of Mitochondrial AdpATP CARRIER IN COMPLE 1e-22
2lck_A303 Structure Of The Mitochondrial Uncoupling Protein 2 1e-12
2lck_A 303 Structure Of The Mitochondrial Uncoupling Protein 2 2e-04
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH Carboxyatractyloside Length = 297 Back     alignment and structure 
Iteration: 1

 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 98/198 (49%), Gaps = 16/198 (8%)
Query: 49  ISQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSD-TATLRKASIWREASRIISEEGFR 107
           +   LAGGVA A+SKT  AP+ R+ +L QVQ      +A  +   I     RI  E+GF 
Sbjct: 8   LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 67
Query: 108 AFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHF----VSGG 163
           +FW+GNL  +    P  ++NF   + YK++          G +     + +F     SGG
Sbjct: 68  SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLG-------GVDRHKQFWRYFAGNLASGG 120
Query: 164 LAGITAASVTYPLDLVRTRLAAQTNV----IYYRGICHALQTICRDEGIWGLYKGLGATL 219
            AG T+    YPLD  RTRLAA          + G+ + +  I + +G+ GLY+G   ++
Sbjct: 121 AAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSV 180
Query: 220 LGVGPSIAISFSVYETLR 237
            G+    A  F VY+T +
Sbjct: 181 QGIIIYRAAYFGVYDTAK 198
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2 Determined By Nmr Molecular Fragment Replacement Length = 303 Back     alignment and structure
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2 Determined By Nmr Molecular Fragment Replacement Length = 303 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 4e-84
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 4e-42
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 1e-11
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 2e-33
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 5e-32
2lck_A 303 Mitochondrial uncoupling protein 2; membrane prote 5e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
 Score =  252 bits (647), Expect = 4e-84
 Identities = 65/230 (28%), Positives = 103/230 (44%), Gaps = 10/230 (4%)

Query: 42  NQSQIGTISQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSDTATLRKA-SIWREASRI 100
           +   +  +   LAGGVA A+SKT  AP+ R+ +L QVQ      +  ++   I     RI
Sbjct: 1   SDQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRI 60

Query: 101 ISEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFV 160
             E+GF +FW+GNL  +    P  ++NF   + YK++         Q          +  
Sbjct: 61  PKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFW---RYFAGNLA 117

Query: 161 SGGLAGITAASVTYPLDLVRTRLAAQTNVI----YYRGICHALQTICRDEGIWGLYKGLG 216
           SGG AG T+    YPLD  RTRLAA          + G+ + +  I + +G+ GLY+G  
Sbjct: 118 SGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFN 177

Query: 217 ATLLGVGPSIAISFSVYETLRSFWQSRRQNDSPVLVSLACGSLSGIASST 266
            ++ G+    A  F VY+T +         +  ++VS          +  
Sbjct: 178 VSVQGIIIYRAAYFGVYDTAKGMLP--DPKNVHIIVSWMIAQTVTAVAGL 225
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 100.0
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 100.0
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 100.0
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 100.0
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=4.5e-45  Score=311.54  Aligned_cols=229  Identities=26%  Similarity=0.364  Sum_probs=197.8

Q ss_pred             chhhhhheecchhhhcccCCccceeeech--------HHHHHHHhhcCCCchhHHHHHHHHHHHHHHHhhccchHHHHHH
Q 024410            4 EARVGVVVEGGQRGLSSGNGSVSVDKITL--------QQQQKQMLQNQSQIGTISQLLAGGVAGALSKTCTAPLARLTIL   75 (268)
Q Consensus         4 ~~~~~i~~~~G~~gly~G~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~P~e~ik~~   75 (268)
                      ++.+.++++||++|||||+.+++++.+++        +..++.+.+.....+....+++|++||+++.++++|+|+||+|
T Consensus        52 ~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktr  131 (303)
T 2lck_A           52 GTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVR  131 (303)
T ss_dssp             HHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence            46788999999999999999999887643        3444444333224677889999999999999999999999999


Q ss_pred             HHhcCCcCCccccccchHHHHHHHHHHhhhhhhhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhcCccccccCCCCchhH
Q 024410           76 FQVQGMHSDTATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDL  155 (268)
Q Consensus        76 ~q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (268)
                      +|++...  ....+|++.++++++|+++||++|||||+.+++++.++..+++|.+||.+|+.+.+..       ....+.
T Consensus       132 lq~~~~~--~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~-------~~~~~~  202 (303)
T 2lck_A          132 FQAQARA--GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN-------LMTDDL  202 (303)
T ss_dssp             HHHSCSC--CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT-------SCCSCH
T ss_pred             Hhccccc--CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCCCch
Confidence            9998653  1234688999999999999999999999999999999999999999999999875421       112345


Q ss_pred             HHHHHhhhHHHHHHHHhhccHHHHHHHHhhccCccccccHHHHHHHHHHhhcccccccchhhhhhhhhhhHHHHHHHHHH
Q 024410          156 FVHFVSGGLAGITAASVTYPLDLVRTRLAAQTNVIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPSIAISFSVYET  235 (268)
Q Consensus       156 ~~~~~~g~~a~~~~~~v~~P~d~ik~r~q~~~~~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~l~~~~~~~~~~~~~ye~  235 (268)
                      ...+++|++|+++++++++|+|+||+|+|.+.. ..|.++++++++++++||+++||||+.|+++|.+|.++++|.+||.
T Consensus       203 ~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~-~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~  281 (303)
T 2lck_A          203 PCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL-GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQ  281 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS-SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc-cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHH
Confidence            677999999999999999999999999999864 3689999999999999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 024410          236 LRSFWQS  242 (268)
Q Consensus       236 ~~~~~~~  242 (268)
                      +++++.+
T Consensus       282 ~k~~l~~  288 (303)
T 2lck_A          282 LKRALMA  288 (303)
T ss_dssp             HHSCCCC
T ss_pred             HHHHHHH
Confidence            9987754
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 268
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 7e-23
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 1e-16
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]

 Score = 92.9 bits (229), Expect = 7e-23
 Identities = 64/213 (30%), Positives = 98/213 (46%), Gaps = 8/213 (3%)

Query: 43  QSQIGTISQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSDTATLRKA-SIWREASRII 101
              +  +   LAGGVA A+SKT  AP+ R+ +L QVQ      +  ++   I     RI 
Sbjct: 1   DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIP 60

Query: 102 SEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVS 161
            E+GF +FW+GNL  +    P  ++NF   + YK++         Q          +  S
Sbjct: 61  KEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRY---FAGNLAS 117

Query: 162 GGLAGITAASVTYPLDLVRTRLAAQTNVIY----YRGICHALQTICRDEGIWGLYKGLGA 217
           GG AG T+    YPLD  RTRLAA          + G+ + +  I + +G+ GLY+G   
Sbjct: 118 GGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNV 177

Query: 218 TLLGVGPSIAISFSVYETLRSFWQSRRQNDSPV 250
           ++ G+    A  F VY+T +      +     V
Sbjct: 178 SVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIV 210
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 100.0
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 100.0
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]

Probab=100.00  E-value=8.6e-39  Score=269.14  Aligned_cols=222  Identities=22%  Similarity=0.291  Sum_probs=185.5

Q ss_pred             chhhhhheecchhhhcccCCccceeeechH--------HHHHHHhhcC-----CCchhHHHHHHHHHHHHHHHhhccchH
Q 024410            4 EARVGVVVEGGQRGLSSGNGSVSVDKITLQ--------QQQKQMLQNQ-----SQIGTISQLLAGGVAGALSKTCTAPLA   70 (268)
Q Consensus         4 ~~~~~i~~~~G~~gly~G~~~~~~~~~~~~--------~~~~~~~~~~-----~~~~~~~~~~~g~~a~~~~~~i~~P~e   70 (268)
                      ++.+.++++||+++||||+.+.++...++.        ...+.+.+..     ........+.+|.+|++++.++++|+|
T Consensus        54 ~~~~~i~~~~G~~~ly~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~P~~  133 (292)
T d1okca_          54 DCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLD  133 (292)
T ss_dssp             HHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhhhccchhhhhhhcccchhHHHHHHHHHHHhcccccccccchhhhhhhhhhhhhhhhHHhhhhhhh
Confidence            457789999999999999999988877544        2222222221     122345678899999999999999999


Q ss_pred             HHHHHHHhcCCcCCccccccchHHHHHHHHHHhhhhhhhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhcCccccccCCC
Q 024410           71 RLTILFQVQGMHSDTATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGEN  150 (268)
Q Consensus        71 ~ik~~~q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (268)
                      ++|+|+|++..... ...++.+..+.+++++++||+++||+|+.+++++.+++.+++|..||.+|+.+.+         +
T Consensus       134 ~ik~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~G~~~l~~G~~~~~~~~~~~~~~~~~~~~~~k~~~~~---------~  203 (292)
T d1okca_         134 FARTRLAADVGKGA-AQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD---------P  203 (292)
T ss_dssp             HHHHHHHHCCCSST-TTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG---------G
T ss_pred             hhheeeeccccccc-cccccccHHHHHHHhhhccchhhhhccccccccceehHhhhhhhhccchhhhccc---------c
Confidence            99999999876443 2346889999999999999999999999999999999999999999999986532         2


Q ss_pred             CchhHHHHHHhhhHHHHHHHHhhccHHHHHHHHhhccC----ccccccHHHHHHHHHHhhcccccccchhhhhhhhhhhH
Q 024410          151 MSSDLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTN----VIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPSI  226 (268)
Q Consensus       151 ~~~~~~~~~~~g~~a~~~~~~v~~P~d~ik~r~q~~~~----~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~l~~~~~~~  226 (268)
                      ........++++.+++.+++++++|+|+||+|+|.+..    ...|.++++++++++++||+++||||+.+++++.++ +
T Consensus       204 ~~~~~~~~~~~~~~~~~~a~~~t~P~dvvktR~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~~lyrG~~~~~~r~i~-~  282 (292)
T d1okca_         204 KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG-G  282 (292)
T ss_dssp             GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHHHH-H
T ss_pred             cccchHHHHHHHHHHHHHHhhccccHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhcCcCcccccHHHHHHHHHH-H
Confidence            22456777899999999999999999999999999853    346889999999999999999999999999999765 6


Q ss_pred             HHHHHHHHHH
Q 024410          227 AISFSVYETL  236 (268)
Q Consensus       227 ~~~~~~ye~~  236 (268)
                      ++.|.+||.+
T Consensus       283 ~i~~~~ye~l  292 (292)
T d1okca_         283 AFVLVLYDEI  292 (292)
T ss_dssp             HHHHHHHHTC
T ss_pred             HhhhhHhhcC
Confidence            7889999963
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure