Citrus Sinensis ID: 024429

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MGSNMRTICRPHMVFTSLISCRDQARSFIKVSFRSPNYRPRLSSWFGFRELNRTESWFRVNQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQLELNLRARRLSRSKIDPEEERKILAREMKASKEYFTNTMKRHTLVLKKRDLMRRKAEEEKRKAIGRLLAAEGLELDTDDEAK
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHcccccccEEcccccccccccccccccccccccccccccccEEEHHccccccccccccHHccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccEEEHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHccccEEEEEEEcccccccccEEEEEcccccccccccccccHHccccccEEEEcccEEEEEEccccccccHHHHccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHccc
Coil and Loop (DISEMBL)
mgsnmrticrphmvFTSLISCRDQARSFIkvsfrspnyrprlsswfgfrelnrteswfrvNQRRTVVSaanwadekspyetlelerDADEEQIKVAYRRLAkfyhpdvydgrgtlekgeTAEAKFIKIQAAYELLIDEERRRQydmdnrvnpmkASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQLELNLRARrlsrskidpEEERKILAREMKASKEYFTNTMKRHTLVLKKRDLMRRKAEEEKRKAIGRLLAAegleldtddeak
Flexible Loop (DISEMBL)
mgsnmrticrphmVFTSLISCRDQARSFikvsfrspnyrprlsswfgfrelnrteswfrvnqrrtvvsaanwadekspyetlelerdadEEQIKVAYRrlakfyhpdvydgrgtlekgetaeaKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQLELNlrarrlsrskidpeeerKILAREMKaskeyftntmkrhtlvlkkrdlmRRKAEEEKRKAIGrllaaegleldtddeak
Low Complexity Region (SEG)
MGSNMRTICRPHMVFTSLISCRDQARSFIKVSFRSPNYRPRLSSWFGFRELNRTESWFRVNQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQLELNLRARRLSRSKIDPEEERKILAREMKASKEYFTNTMKRHTLVLKKRDLMRRKAEEEKRKAIGRLLAAEGLELDTDDEAK
Disordered region (IsUnstruct)
******TICRPHMVFTSLISCRDQARSFIKVSFRSPNYRPRLSSWFGFRELNRTESWFRVNQRRTVVSAANWADE***************EQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERR**Y********MKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQL******************************************LV*************************************
Disordered Region (DISOPRED)
**********PHMVFTSLISCRDQAR*********************************************WADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRG********EAKFIKIQAAYELLIDEERRRQYDMDNRV****************RKAFDQRGDMAIAA*********************DPEEERKILAREMKASKEYFTNTMKR*****************************************
Disordered Region (DISEMBL)
MGSNMRTICRPHMVFTSLISCRDQARSFIKVSFRSPNYRPRLSSWFGFRELNRTESWFRVNQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQLELNLRARRLSRSKIDPEEERKILAREMKASKEYFTNTMKRHTLVLKKRDLMRRKAEEEKRKAIGRLLAAEGLELDTDDEAK
Disordered Region (DISPRO)
***NMRTICRPHMVFTSLISCRDQARSFIKVSFRSPNYRPRLSSWFGFRELNRTESWFRVNQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQLELNLRARRLSRSKIDPEEERKILAREMKASKEYFTNTMKRHTLVLKKRDLMRRKAEEE****IGRLLAAEG**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSNMRTICRPHMVFTSLISCRDQARSFIKVSFRSPNYRPRLSSWFGFRELNRTESWFRVNQRRTVVSAANWADEKSPxxxxxxxxxxxxxxxxxxxxxLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQLELNLRARRLSRSKIDPEEERKILAREMKASKEYFTNTMKRHTLVLKKRDLMRRKAEEEKRKAIGRLLAAEGLELDTDDEAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	268	2.2.26 [Sep-21-2011]
B0S1F7	372	Chaperone protein DnaJ OS	yes	no	0.242	0.174	0.492	4e-11
A5UYW4	370	Chaperone protein DnaJ OS	yes	no	0.261	0.189	0.454	3e-10
A7NS65	370	Chaperone protein DnaJ OS	yes	no	0.264	0.191	0.448	3e-10
A9VHU0	368	Chaperone protein DnaJ OS	yes	no	0.25	0.182	0.472	5e-10
Q75VW3	356	Chaperone protein DnaJ OS	yes	no	0.291	0.219	0.423	6e-10
B8I304	379	Chaperone protein DnaJ OS	yes	no	0.253	0.179	0.445	6e-10
A4XKA5	387	Chaperone protein DnaJ OS	yes	no	0.25	0.173	0.506	6e-10
A9KKT9	381	Chaperone protein DnaJ OS	yes	no	0.343	0.241	0.373	9e-10
Q8RB67	384	Chaperone protein DnaJ OS	yes	no	0.227	0.158	0.507	1e-09
B9MJZ0	388	Chaperone protein DnaJ OS	yes	no	0.25	0.172	0.506	1e-09

>sp|B0S1F7|DNAJ_FINM2 Chaperone protein DnaJ OS=Finegoldia magna (strain ATCC 29328) GN=dnaJ PE=3 SV=1

 Score = 68.9 bits (167), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 48/71 (67%), Gaps = 6/71 (8%)

Query: 76  KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
           K+ YE LE+  +A +E+IK +YRRLAK YHPD+  G         AE KF +I  AYE+L
Sbjct: 2   KNLYEILEVNENATQEEIKKSYRRLAKKYHPDINSGD------SEAENKFKEINGAYEVL 55

Query: 136 IDEERRRQYDM 146
            D+E+R++YDM
Sbjct: 56  GDKEKRKKYDM 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Finegoldia magna (strain ATCC 29328) (taxid: 334413)

>sp|A5UYW4|DNAJ_ROSS1 Chaperone protein DnaJ OS=Roseiflexus sp. (strain RS-1) GN=dnaJ PE=3 SV=1

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 7/77 (9%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L ++R+A +++IK A+RRLA+ YHPDV        K   AEAKF +I  AYE+L D 
Sbjct: 8   YEVLGVQRNASQDEIKKAFRRLARQYHPDV-------NKAPDAEAKFKEINEAYEVLSDP 60

Query: 139 ERRRQYDMDNRVNPMKA 155
           E+R  YD      P  A
Sbjct: 61  EKRSMYDRFGHAGPTAA 77

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Roseiflexus sp. (strain RS-1) (taxid: 357808)

>sp|A7NS65|DNAJ_ROSCS Chaperone protein DnaJ OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=dnaJ PE=3 SV=1

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 7/78 (8%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L ++R+A +++IK A+RRLA+ YHPDV        K   AEAKF +I  AYE+L D 
Sbjct: 8   YEVLGVQRNASQDEIKKAFRRLARQYHPDV-------NKAPDAEAKFKEINEAYEVLSDP 60

Query: 139 ERRRQYDMDNRVNPMKAS 156
           E+R  YD      P  A 
Sbjct: 61  EKRSMYDRFGHAGPTAAP 78

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Roseiflexus castenholzii (strain DSM 13941 / HLO8) (taxid: 383372)

>sp|A9VHU0|DNAJ_BACWK Chaperone protein DnaJ OS=Bacillus weihenstephanensis (strain KBAB4) GN=dnaJ PE=3 SV=1

 Score = 65.1 bits (157), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 7/74 (9%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L L + A +++IK AYRRLAK YHPDV        K E A  KF ++Q AYE+L D+
Sbjct: 7   YEVLGLSQGASKDEIKKAYRRLAKKYHPDV-------SKEENAIEKFKEVQEAYEVLSDD 59

Query: 139 ERRRQYDMDNRVNP 152
           ++R QYD      P
Sbjct: 60  QKRAQYDQFGHAGP 73

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Bacillus weihenstephanensis (strain KBAB4) (taxid: 315730)

>sp|Q75VW3|DNAJ_HYDTT Chaperone protein DnaJ OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) GN=dnaJ PE=3 SV=1

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 7/85 (8%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y+ L + +DA  E+IK AYRRLAK YHPD+          E A  KF +I  AY +L DE
Sbjct: 7   YQILGVSKDATAEEIKKAYRRLAKEYHPDI-------SADENASEKFKEINEAYHILSDE 59

Query: 139 ERRRQYDMDNRVNPMKASQAWMEWL 163
           ERR++YD   +    K+ + +ME++
Sbjct: 60  ERRKEYDRILKSGDEKSYRDFMEYI 84

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) (taxid: 608538)

>sp|B8I304|DNAJ_CLOCE Chaperone protein DnaJ OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=dnaJ PE=3 SV=1

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 6/74 (8%)

Query: 72  WADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAA 131
            AD++  YE L ++++A + ++K AYR LAK YHPDV  G        TAEAKF ++  A
Sbjct: 1   MADKRDYYEVLGVDKNASDAELKKAYRNLAKKYHPDVNPGD------TTAEAKFKEVNEA 54

Query: 132 YELLIDEERRRQYD 145
           YE+L D ++R +YD
Sbjct: 55  YEILSDSQKRSRYD 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) (taxid: 394503)

>sp|A4XKA5|DNAJ_CALS8 Chaperone protein DnaJ OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=dnaJ PE=3 SV=1

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 47/73 (64%), Gaps = 6/73 (8%)

Query: 73  ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAY 132
           A +K  YE L + R+A +E+IK AYRRLAK YHPD   G       + AE KF +I  AY
Sbjct: 2   AQKKDYYEILGVPRNATQEEIKRAYRRLAKQYHPDANPGN------KEAEEKFKEINEAY 55

Query: 133 ELLIDEERRRQYD 145
           E+L D E+RR+YD
Sbjct: 56  EVLSDPEKRRKYD 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) (taxid: 351627)

>sp|A9KKT9|DNAJ_CLOPH Chaperone protein DnaJ OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=dnaJ PE=3 SV=1

 Score = 64.3 bits (155), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 55/107 (51%), Gaps = 15/107 (14%)

Query: 72  WADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAA 131
            AD++  YE L + + A +++IK AYR+LAK YHPD   G       +TAEAKF +   A
Sbjct: 1   MADKRDYYEVLGISKSASDDEIKKAYRKLAKQYHPDANPGD------QTAEAKFKEASEA 54

Query: 132 YELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFD-QRGDMA 177
           Y +L D E++RQ+D        +   A  E        FD   GDM 
Sbjct: 55  YAVLSDPEKKRQFD--------QFGHAAFEQGGGGAGGFDFNMGDMG 93

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) (taxid: 357809)

>sp|Q8RB67|DNAJ_THETN Chaperone protein DnaJ OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=dnaJ PE=3 SV=1

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 45/67 (67%), Gaps = 6/67 (8%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L ++R+A +E+IK AYRRLAK YHPD+  G       + AE KF +I  AYE+L D 
Sbjct: 7   YEILGVDRNASQEEIKKAYRRLAKKYHPDLNPGD------KEAEQKFKEINEAYEILSDP 60

Query: 139 ERRRQYD 145
           ++R QYD
Sbjct: 61  QKRAQYD 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068)

>sp|B9MJZ0|DNAJ_CALBD Chaperone protein DnaJ OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=dnaJ PE=3 SV=1

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 46/73 (63%), Gaps = 6/73 (8%)

Query: 73  ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAY 132
           A +K  YE L + R+A EE+IK AYRRLAK YHPD   G       + AE KF +I  AY
Sbjct: 2   AQKKDYYEILGVPRNATEEEIKRAYRRLAKQYHPDANPGN------KEAEEKFKEINEAY 55

Query: 133 ELLIDEERRRQYD 145
           E+L D E+R+ YD
Sbjct: 56  EVLSDPEKRKLYD 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Anaerocellum thermophilum (strain DSM 6725 / Z-1320) (taxid: 521460)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
225459417	272	PREDICTED: uncharacterized protein LOC10	0.973	0.959	0.762	1e-115
388516749	268	unknown [Lotus japonicus]	0.977	0.977	0.769	1e-111
356515831	268	PREDICTED: uncharacterized protein LOC10	0.955	0.955	0.777	1e-110
18411751	271	chaperone DnaJ-domain-containing protein	0.970	0.959	0.729	1e-109
297839657	272	hypothetical protein ARALYDRAFT_476957 [	0.955	0.941	0.731	1e-107
224066897	276	predicted protein [Populus trichocarpa]	0.958	0.931	0.733	1e-104
449511575	271	PREDICTED: uncharacterized LOC101214898	0.981	0.970	0.712	1e-103
388491678	271	unknown [Medicago truncatula]	0.973	0.963	0.686	1e-100
449458087	268	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.970	0.970	0.701	1e-100
255545582	256	chaperone protein DNAj, putative [Ricinu	0.925	0.968	0.774	1e-96

>gi|225459417|ref|XP_002285821.1| PREDICTED: uncharacterized protein LOC100250529 [Vitis vinifera] gi|302141895|emb|CBI19098.3| unnamed protein product [Vitis vinifera]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/274 (76%), Positives = 240/274 (87%), Gaps = 13/274 (4%)

Query: 3   SNMRTICRPHM---VFTSLISCRDQARSFIKVSFRSPNYRPRLS------SWFGFRELNR 53
           SN+RTICRPH+    F+S I CR QA +  ++SFR+PN + R+S       WF   + NR
Sbjct: 2   SNLRTICRPHIHIVFFSSFICCRSQA-AKSRISFRNPNSQSRVSLPCAFSPWF---DSNR 57

Query: 54  TESWFRVNQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRG 113
            E WFRV+QRRT+V A+ W DEKSPYETLEL+RDADEE+IK+AYRRLAKFYHPDVYDGRG
Sbjct: 58  NEPWFRVSQRRTLVRASKWTDEKSPYETLELDRDADEEKIKLAYRRLAKFYHPDVYDGRG 117

Query: 114 TLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQR 173
           TL +GETAEA+FIKIQAAYELLID+++RRQYD DNRVNPMKASQAWMEWL+KKRKAFDQR
Sbjct: 118 TLAEGETAEARFIKIQAAYELLIDDKKRRQYDNDNRVNPMKASQAWMEWLMKKRKAFDQR 177

Query: 174 GDMAIAAWAEQQQLELNLRARRLSRSKIDPEEERKILAREMKASKEYFTNTMKRHTLVLK 233
           GDMAIAAWAEQQQ ELNLRARRLSRSKIDPEEER+ILA+E KASKEYF+NT+KRHTL+LK
Sbjct: 178 GDMAIAAWAEQQQRELNLRARRLSRSKIDPEEERRILAKEKKASKEYFSNTLKRHTLILK 237

Query: 234 KRDLMRRKAEEEKRKAIGRLLAAEGLELDTDDEA 267
           KRDLMR+KAEEE +K+I +LLAAEGLELDTDDEA
Sbjct: 238 KRDLMRKKAEEEMKKSISQLLAAEGLELDTDDEA 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516749|gb|AFK46436.1| unknown [Lotus japonicus]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/269 (76%), Positives = 231/269 (85%), Gaps = 7/269 (2%)

Query: 3   SNMRTICRPHMVFTSLISCRDQARSFIKVSFRSPNYRPRLSSWFGFREL---NRTESWFR 59
           SN+RT+CR H VF S ISCR Q RS  +  FR+PN++P L S   +      +RT  WFR
Sbjct: 2   SNLRTLCRSHTVF-SFISCRHQFRS--RALFRNPNWKPSLQSPSLYSTCLGSSRTVPWFR 58

Query: 60  VNQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGE 119
           VNQRRTV  A+ W +EKSPYETLELERDADEEQIK+AYRRLAKFYHPDVYDGRGTLE+GE
Sbjct: 59  VNQRRTVTKASKWDEEKSPYETLELERDADEEQIKIAYRRLAKFYHPDVYDGRGTLEEGE 118

Query: 120 TAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIA 179
           TAEA+FIKIQAAYELLIDEE RR+YDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIA
Sbjct: 119 TAEARFIKIQAAYELLIDEETRRKYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIA 178

Query: 180 AWAEQQQLELNLRARRLSRSKIDPEEERKILAREMKASKEYFTNTMKRHTLVLKKRDLMR 239
           AWAEQQQ ELN+R R+LSRSKIDP+E R+ILARE KAS E F+NT+KRHTL+LKKRDLMR
Sbjct: 179 AWAEQQQRELNIRVRQLSRSKIDPDEARRILAREKKASAENFSNTLKRHTLILKKRDLMR 238

Query: 240 RKAEEEKRKAIGRLLAAEGLELDTD-DEA 267
           RKAEEEK+  I +LLAAEGLELD+D DEA
Sbjct: 239 RKAEEEKKMTISQLLAAEGLELDSDSDEA 267

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515831|ref|XP_003526601.1| PREDICTED: uncharacterized protein LOC100808285 [Glycine max]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/261 (77%), Positives = 227/261 (86%), Gaps = 5/261 (1%)

Query: 3   SNMRTICRPHMVFTSLISCRDQARSFIKVSFRSPNYRPRLSSWFGFRELNR--TESWFRV 60
           SN+RT+CRP  VF S IS + Q RS  +VSFR+PN +PRL S F +  +    +  WFRV
Sbjct: 2   SNLRTLCRPQTVF-SFISFQHQFRS--RVSFRNPNCKPRLPSPFLYSTIASRGSNPWFRV 58

Query: 61  NQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGET 120
           NQRRTV  A NWA++KSPYETLELE DAD+EQIK AYRRLAKFYHPDVYDGRGTLE+GET
Sbjct: 59  NQRRTVAKATNWAEQKSPYETLELEGDADDEQIKNAYRRLAKFYHPDVYDGRGTLEEGET 118

Query: 121 AEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAA 180
           AEA+FIKIQ+AYELLID ERRRQYDMD+RVNPMKASQAWMEWLIKKRKAFDQRGDMAIAA
Sbjct: 119 AEARFIKIQSAYELLIDRERRRQYDMDSRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAA 178

Query: 181 WAEQQQLELNLRARRLSRSKIDPEEERKILAREMKASKEYFTNTMKRHTLVLKKRDLMRR 240
           WAEQQQ ELNLR RRLSRSKIDP+E R+ILARE KAS EY++NT+KRHTL+LKKRDLMRR
Sbjct: 179 WAEQQQRELNLRVRRLSRSKIDPDEARRILAREKKASAEYYSNTLKRHTLILKKRDLMRR 238

Query: 241 KAEEEKRKAIGRLLAAEGLEL 261
           K+EEEK+K I RLLAAEGLEL
Sbjct: 239 KSEEEKKKTINRLLAAEGLEL 259

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411751|ref|NP_565163.1| chaperone DnaJ-domain-containing protein [Arabidopsis thaliana] gi|42572151|ref|NP_974166.1| chaperone DnaJ-domain-containing protein [Arabidopsis thaliana] gi|6573763|gb|AAF17683.1|AC009243_10 F28K19.14 [Arabidopsis thaliana] gi|107738377|gb|ABF83686.1| At1g77930 [Arabidopsis thaliana] gi|332197925|gb|AEE36046.1| chaperone DnaJ-domain-containing protein [Arabidopsis thaliana] gi|332197926|gb|AEE36047.1| chaperone DnaJ-domain-containing protein [Arabidopsis thaliana]

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/262 (72%), Positives = 232/262 (88%), Gaps = 2/262 (0%)

Query: 3   SNMRTICRPHMVFTSLISC-RDQARSFIKVSFRSPNYRPRLSSWFGFRELNRTESWFRVN 61
           SN+R ICRP+ VF+S++ C R Q+RS  +VS ++  +R + S+   FR  N +  WFR+N
Sbjct: 2   SNLRAICRPYSVFSSIVCCSRHQSRSLFRVSIKNVAFRNQSSNSSWFRSKN-SNLWFRLN 60

Query: 62  QRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETA 121
           QR+T+V A+NW+ EKSPY+TLEL+R+A+EEQIKVAYRRLAKFYHPDVYDG+GTLE+GETA
Sbjct: 61  QRKTLVRASNWSQEKSPYDTLELDRNAEEEQIKVAYRRLAKFYHPDVYDGKGTLEEGETA 120

Query: 122 EAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAW 181
           EA+FIKIQAAYELL+D E++ QYDMDNRVNPMKASQAWMEWL+KKRKAFDQRGDMA+AAW
Sbjct: 121 EARFIKIQAAYELLMDSEKKVQYDMDNRVNPMKASQAWMEWLMKKRKAFDQRGDMAVAAW 180

Query: 182 AEQQQLELNLRARRLSRSKIDPEEERKILAREMKASKEYFTNTMKRHTLVLKKRDLMRRK 241
           AEQQQL++NLRARRLSRSK+DPEEERKIL +E KAS+E F +T+KRHTLVLKKRDLMR+K
Sbjct: 181 AEQQQLDINLRARRLSRSKVDPEEERKILEKEKKASRELFNSTLKRHTLVLKKRDLMRKK 240

Query: 242 AEEEKRKAIGRLLAAEGLELDT 263
           AEE+K+K I +LLAAEGLELDT
Sbjct: 241 AEEDKKKLITQLLAAEGLELDT 262

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839657|ref|XP_002887710.1| hypothetical protein ARALYDRAFT_476957 [Arabidopsis lyrata subsp. lyrata] gi|297333551|gb|EFH63969.1| hypothetical protein ARALYDRAFT_476957 [Arabidopsis lyrata subsp. lyrata]

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/257 (73%), Positives = 227/257 (88%), Gaps = 1/257 (0%)

Query: 3   SNMRTICRPHMVFTSLISC-RDQARSFIKVSFRSPNYRPRLSSWFGFRELNRTESWFRVN 61
           SN+R I RPH VF+S++ C R Q+RS  +VS ++  +R R+S+   FR    +   FR+N
Sbjct: 2   SNLRAIGRPHSVFSSIVCCSRHQSRSLFRVSIKNVAFRNRVSNSSWFRSKEDSNLCFRLN 61

Query: 62  QRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETA 121
           QR+T+V A+NW++EKSPY+TLEL+RDA+EEQIKVAYRRLAKFYHPDVYDG+GTLE+GETA
Sbjct: 62  QRKTLVRASNWSEEKSPYDTLELDRDAEEEQIKVAYRRLAKFYHPDVYDGKGTLEEGETA 121

Query: 122 EAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAW 181
           EA+FIKIQAAYELL+D E++RQYDMDNRVNPMKASQAWMEWL+KKRKAFDQRGDMAIAAW
Sbjct: 122 EARFIKIQAAYELLMDSEKKRQYDMDNRVNPMKASQAWMEWLMKKRKAFDQRGDMAIAAW 181

Query: 182 AEQQQLELNLRARRLSRSKIDPEEERKILAREMKASKEYFTNTMKRHTLVLKKRDLMRRK 241
           AEQQQLE+NLRARRLSRSK+DPEEERKIL +E KAS+E + +T+KRHTLVLKKRDLMR+K
Sbjct: 182 AEQQQLEINLRARRLSRSKVDPEEERKILEKEKKASRELYNSTLKRHTLVLKKRDLMRKK 241

Query: 242 AEEEKRKAIGRLLAAEG 258
           AEE+K+K I +LLAAEG
Sbjct: 242 AEEDKKKLITQLLAAEG 258

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066897|ref|XP_002302268.1| predicted protein [Populus trichocarpa] gi|118487124|gb|ABK95391.1| unknown [Populus trichocarpa] gi|222843994|gb|EEE81541.1| predicted protein [Populus trichocarpa]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/266 (73%), Positives = 223/266 (83%), Gaps = 9/266 (3%)

Query: 5   MRTICRPHMVFTSLI---SCRDQARSFIKVSFRSP-NYRPRLSSWFG--FRELNRTESWF 58
           +RT CRPH V TS     S R Q RS I+VSFR+P +   R SS+F       N  + WF
Sbjct: 9   LRTACRPHTVLTSFTCSSSSRHQPRSRIRVSFRTPPDCNKRHSSFFSPWLIHTNNNDPWF 68

Query: 59  RVNQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKG 118
           RVN +RT+V A  W + KSPYETLELERDADEE IKVAYRRLAK+YHPDVYDGRGTLE+G
Sbjct: 69  RVNHKRTIVRA--WTEPKSPYETLELERDADEEDIKVAYRRLAKYYHPDVYDGRGTLEEG 126

Query: 119 ETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAI 178
           ETAEA+FIKIQAAYELL+D+E+RRQY+MDNRVNPMKASQAWMEWL+KKR AFDQRGDMAI
Sbjct: 127 ETAEARFIKIQAAYELLMDDEKRRQYNMDNRVNPMKASQAWMEWLMKKRTAFDQRGDMAI 186

Query: 179 AAWAEQQQLELNLRARRLSRSKIDPEEERKILAREMKASKEYFTNTMKRHTLVLKKRDLM 238
            AWAEQQQ E+NLR RRLSR+K DP+EER+ILA+E KAS EYF++TMKRHTLVLKKRDLM
Sbjct: 187 MAWAEQQQREMNLRVRRLSRTKTDPDEERRILAKEKKASMEYFSSTMKRHTLVLKKRDLM 246

Query: 239 RRKAEEEKRKAIGRLLAAEGLELDTD 264
           R+KAEE+KR +I +LLAAEGLELDTD
Sbjct: 247 RKKAEEKKR-SISQLLAAEGLELDTD 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511575|ref|XP_004163994.1| PREDICTED: uncharacterized LOC101214898 [Cucumis sativus]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/268 (71%), Positives = 226/268 (84%), Gaps = 5/268 (1%)

Query: 3   SNMRTICRPHMVFTSLISCRDQARSFIKVSFRSPNYRPRLS----SWFGFRELNRTESWF 58
           SN+RT CRPH    S      + RS   VSFR+PN + R S    ++        T++WF
Sbjct: 2   SNLRTACRPH-AMFSSFIFSSRFRSMPTVSFRNPNNKRRFSLFSPTFNSSPCFCPTQNWF 60

Query: 59  RVNQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKG 118
           R+NQRRT+  A+NWA+EKSPYETLELERDAD+EQIK ++RRLAKFYHPDVYDGRGTLE+G
Sbjct: 61  RINQRRTLAMASNWANEKSPYETLELERDADDEQIKSSHRRLAKFYHPDVYDGRGTLEEG 120

Query: 119 ETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAI 178
           ETAEA+FIKIQAAYELL+D+E+RRQYD+DNRVNPMKASQAWMEWLIKKRKAFDQRG+MAI
Sbjct: 121 ETAEARFIKIQAAYELLMDDEKRRQYDVDNRVNPMKASQAWMEWLIKKRKAFDQRGEMAI 180

Query: 179 AAWAEQQQLELNLRARRLSRSKIDPEEERKILAREMKASKEYFTNTMKRHTLVLKKRDLM 238
           AAWAEQQQ E+NLRARRLS+SK+DP EE++++A+E KAS EYF +T+KRH LVLKKRDLM
Sbjct: 181 AAWAEQQQREMNLRARRLSQSKVDPGEEKRLVAKEKKASIEYFNSTLKRHVLVLKKRDLM 240

Query: 239 RRKAEEEKRKAIGRLLAAEGLELDTDDE 266
           RRKAEEEK+K I +LLA EGLELDTDD+
Sbjct: 241 RRKAEEEKKKVISQLLAEEGLELDTDDD 268

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491678|gb|AFK33905.1| unknown [Medicago truncatula]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/271 (68%), Positives = 221/271 (81%), Gaps = 10/271 (3%)

Query: 3   SNMRTICRPHMVFTSLISCRDQARSFIKVSFRSPNYRPRL------SSWFGFR-ELNRTE 55
           SN+RT+CR   VF S I+CR Q R   + SF +PN +P L      S+W G     +R  
Sbjct: 2   SNLRTLCRTQTVF-SFINCRHQFR--FRASFWNPNCKPYLQSPWLYSTWLGSSGNSSRPM 58

Query: 56  SWFRVNQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTL 115
             FR+NQ+RTV  A NW  +K+PYETLELE DAD+EQIK+AYRRLAKFYHPDVYDGRG L
Sbjct: 59  PQFRLNQKRTVAKATNWDQQKTPYETLELEGDADDEQIKIAYRRLAKFYHPDVYDGRGIL 118

Query: 116 EKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGD 175
           E+GETAEA+FIKIQAAYELLID ERR++YDM N+ NPMKASQAWMEWL+KKRKAF+QRGD
Sbjct: 119 EEGETAEARFIKIQAAYELLIDSERRKKYDMANQANPMKASQAWMEWLMKKRKAFNQRGD 178

Query: 176 MAIAAWAEQQQLELNLRARRLSRSKIDPEEERKILAREMKASKEYFTNTMKRHTLVLKKR 235
           MAI AWAEQQQ ELN+RAR+LSRSK+DP+E RKILARE KAS E+F++T+KRHTL+L+KR
Sbjct: 179 MAIYAWAEQQQRELNVRARQLSRSKVDPDEYRKILAREKKASAEHFSSTLKRHTLILQKR 238

Query: 236 DLMRRKAEEEKRKAIGRLLAAEGLELDTDDE 266
           D+MR+KA+EE +K IG LLAAEGLELD  DE
Sbjct: 239 DIMRKKADEEMKKTIGHLLAAEGLELDDSDE 269

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458087|ref|XP_004146779.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101214898 [Cucumis sativus]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/268 (70%), Positives = 222/268 (82%), Gaps = 8/268 (2%)

Query: 3   SNMRTICRPHMVFTSLISCRDQARSFIKVSFRSPNYRPRLS----SWFGFRELNRTESWF 58
           SN+RT CRPH    S      + RS   VSFR+PN + R S    ++        T++WF
Sbjct: 2   SNLRTACRPH-AMFSSFIFSSRFRSMPTVSFRNPNNKRRFSLFSPTFNSSPCFCPTQNWF 60

Query: 59  RVNQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKG 118
           R+NQRRT+  A+NWA+EKSPYETLELERDAD+EQIK +YRRLAKFYHPDVYDGRGTLE+G
Sbjct: 61  RINQRRTLAMASNWANEKSPYETLELERDADDEQIKSSYRRLAKFYHPDVYDGRGTLEEG 120

Query: 119 ETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAI 178
           ETAEA+FIKIQ    LL+D+E+RRQYD+DNRVNPMKASQAWMEWLIKKRKAFDQRG+MAI
Sbjct: 121 ETAEARFIKIQX---LLMDDEKRRQYDVDNRVNPMKASQAWMEWLIKKRKAFDQRGEMAI 177

Query: 179 AAWAEQQQLELNLRARRLSRSKIDPEEERKILAREMKASKEYFTNTMKRHTLVLKKRDLM 238
           AAWAEQQQ E+NLRARRLS+SK+DP EE++++A+E KAS EYF +T+KRH LVLKKRDLM
Sbjct: 178 AAWAEQQQREMNLRARRLSQSKVDPGEEKRLVAKEKKASIEYFNSTLKRHVLVLKKRDLM 237

Query: 239 RRKAEEEKRKAIGRLLAAEGLELDTDDE 266
           RRKAEEEK+K I +LLA EGLELDTDD+
Sbjct: 238 RRKAEEEKKKVISQLLAEEGLELDTDDD 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545582|ref|XP_002513851.1| chaperone protein DNAj, putative [Ricinus communis] gi|223546937|gb|EEF48434.1| chaperone protein DNAj, putative [Ricinus communis]

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 196/253 (77%), Positives = 224/253 (88%), Gaps = 5/253 (1%)

Query: 19  ISCRD-QARS-FIKVSFRS-PNYRPRLSSWFGFREL--NRTESWFRVNQRRTVVSAANWA 73
           +SCR  Q RS  ++VSFR+ P+ +P LSS   F        +SWFRVNQRRT V AANW 
Sbjct: 1   MSCRHHQPRSNGVRVSFRNHPDDKPPLSSPSLFSSWLHGNNDSWFRVNQRRTAVRAANWT 60

Query: 74  DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYE 133
           D+KSPY+TLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLE+GETAEA+FIKIQAAYE
Sbjct: 61  DQKSPYDTLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEEGETAEARFIKIQAAYE 120

Query: 134 LLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQLELNLRA 193
           LL+D+++ RQYDMD+RVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQ E+NLRA
Sbjct: 121 LLMDDDKHRQYDMDHRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQREMNLRA 180

Query: 194 RRLSRSKIDPEEERKILAREMKASKEYFTNTMKRHTLVLKKRDLMRRKAEEEKRKAIGRL 253
           RRL+RSK+DPEEER+ILARE KAS EY  +T++RHTLVLKKRDLMR+KAEEEK+KAI +L
Sbjct: 181 RRLARSKVDPEEERRILAREKKASMEYLNSTLRRHTLVLKKRDLMRKKAEEEKKKAISQL 240

Query: 254 LAAEGLELDTDDE 266
           LAAEGLELDTD++
Sbjct: 241 LAAEGLELDTDED 253

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
TAIR|locus:2029381	271	AT1G77930 "AT1G77930" [Arabido	0.981	0.970	0.724	2.6e-102
UNIPROTKB|O25668	288	C694_05300 "Co-chaperone-curve	0.246	0.229	0.52	1.3e-11
TIGR_CMR|CJE_1364	297	CJE_1364 "co-chaperone protein	0.231	0.208	0.536	3.1e-10
UNIPROTKB|G4N1N5	416	MGG_07502 "Chaperone dnaJ 2" [	0.227	0.146	0.507	1.1e-09
WB|WBGene00001036	249	dnj-18 [Caenorhabditis elegans	0.679	0.730	0.259	1.3e-09
CGD|CAL0004107	488	MDJ1 [Candida albicans (taxid:	0.227	0.125	0.514	5.8e-09
TIGR_CMR|BA_4538	371	BA_4538 "chaperone protein dna	0.223	0.161	0.507	1e-08
POMBASE|SPAC1071.09c	282	SPAC1071.09c "DNAJ domain prot	0.690	0.656	0.274	1.1e-08
TAIR|locus:2013940	165	AT1G71000 [Arabidopsis thalian	0.246	0.4	0.426	2e-08
TAIR|locus:2135159	161	J11 "AT4G36040" [Arabidopsis t	0.347	0.577	0.367	2e-08

TAIR|locus:2029381 AT1G77930 "AT1G77930" [Arabidopsis thaliana (taxid:3702)]

 Score = 1014 (362.0 bits), Expect = 2.6e-102, P = 2.6e-102
 Identities = 192/265 (72%), Positives = 234/265 (88%)

Query:     3 SNMRTICRPHMVFTSLISC-RDQARSFIKVSFRSPNYRPRLSSWFGFRELNRTESWFRVN 61
             SN+R ICRP+ VF+S++ C R Q+RS  +VS ++  +R + S+   FR  N +  WFR+N
Sbjct:     2 SNLRAICRPYSVFSSIVCCSRHQSRSLFRVSIKNVAFRNQSSNSSWFRSKN-SNLWFRLN 60

Query:    62 QRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETA 121
             QR+T+V A+NW+ EKSPY+TLEL+R+A+EEQIKVAYRRLAKFYHPDVYDG+GTLE+GETA
Sbjct:    61 QRKTLVRASNWSQEKSPYDTLELDRNAEEEQIKVAYRRLAKFYHPDVYDGKGTLEEGETA 120

Query:   122 EAKFIKIQAAYELLIDEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAW 181
             EA+FIKIQAAYELL+D E++ QYDMDNRVNPMKASQAWMEWL+KKRKAFDQRGDMA+AAW
Sbjct:   121 EARFIKIQAAYELLMDSEKKVQYDMDNRVNPMKASQAWMEWLMKKRKAFDQRGDMAVAAW 180

Query:   182 AEQQQLELNLRARRLSRSKIDPEEERKILAREMKASKEYFTNTMKRHTLVLKKRDLMRRK 241
             AEQQQL++NLRARRLSRSK+DPEEERKIL +E KAS+E F +T+KRHTLVLKKRDLMR+K
Sbjct:   181 AEQQQLDINLRARRLSRSKVDPEEERKILEKEKKASRELFNSTLKRHTLVLKKRDLMRKK 240

Query:   242 AEEEKRKAIGRLLAAEGLELDTDDE 266
             AEE+K+K I +LLAAEGLELDT+ E
Sbjct:   241 AEEDKKKLITQLLAAEGLELDTEAE 265

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

UNIPROTKB|O25668 C694_05300 "Co-chaperone-curved DNA binding protein A (CbpA)" [Helicobacter pylori 26695 (taxid:85962)]

 Score = 174 (66.3 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 39/75 (52%), Positives = 51/75 (68%)

Query:    76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
             KS Y+TL +  +A +++IK +YRRLA+ YHPD       L K + AE KF +I AAYE+L
Sbjct:     3 KSLYQTLNVSENASQDEIKKSYRRLARQYHPD-------LNKTKEAEEKFKEINAAYEIL 55

Query:   136 IDEERRRQYDM--DN 148
              DEE+RRQYD   DN
Sbjct:    56 SDEEKRRQYDQFGDN 70

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|CJE_1364 CJE_1364 "co-chaperone protein DnaJ" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 164 (62.8 bits), Expect = 3.1e-10, P = 3.1e-10
 Identities = 37/69 (53%), Positives = 48/69 (69%)

Query:    77 SPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLI 136
             S YETL + ++A  ++IK AYRRLA+ YHPD+       EKG  AE KF +I AAYE+L 
Sbjct:     3 SLYETLGVSKNASADEIKKAYRRLARKYHPDI-----NKEKG--AEEKFKEINAAYEILS 55

Query:   137 DEERRRQYD 145
             DE++R QYD
Sbjct:    56 DEKKRAQYD 64

GO:0006457 "protein folding" evidence=ISS

GO:0006950 "response to stress" evidence=ISS

UNIPROTKB|G4N1N5 MGG_07502 "Chaperone dnaJ 2" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 163 (62.4 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 34/67 (50%), Positives = 46/67 (68%)

Query:    79 YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
             Y+ LE++R+ADE+ IK+AYRRL+K +HPD   G  T      AE KF+++  AYE LID+
Sbjct:    24 YKILEIDRNADEKAIKIAYRRLSKKWHPDKNPGDAT------AEGKFVEVSEAYEALIDK 77

Query:   139 ERRRQYD 145
               RR YD
Sbjct:    78 TTRRIYD 84

GO:0005575 "cellular_component" evidence=ND

WB|WBGene00001036 dnj-18 [Caenorhabditis elegans (taxid:6239)]

 Score = 156 (60.0 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 50/193 (25%), Positives = 94/193 (48%)

Query:    61 NQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGET 120
             NQ+R++  +   + ++  Y+ L L + A ++ IK AY +L+K +HPD         K E 
Sbjct:     8 NQKRSLFLSVPCSSQQDHYKVLGLAQSASQKDIKSAYYKLSKQHHPDT----NPTNKEEA 63

Query:   121 AEAKFIKIQAAYELLIDEERRRQYDMDN-RVNPMKASQAWMEWLIKKRKAFD--QRGDMA 177
             A+ KF ++  AYE+L  E++R+ YDM   R +PM    +      ++R + +  Q  D+ 
Sbjct:    64 AK-KFHQVAMAYEILSSEDKRKAYDMTRIRTSPMPNDPSSFSNRYRRRTSSNLKQYTDID 122

Query:   178 IAAWAEQQQLELNLRARRLSRSKID-PEE-ERKILAREMKASKEYFTNTMKRHTLVLKKR 235
             I  + + +  + + R R    S  D P E   +    + +  K  +    ++H  + K  
Sbjct:   123 ID-YKDFEHFQRSTRRRPQYHSHFDMPNEFYAEFGGFKKRVFKSEYEEAQEKHGSMYKDG 181

Query:   236 DLMRRKAEEEKRK 248
                +R+ EE +R+
Sbjct:   182 RAAQREMEELRRQ 194

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

CGD|CAL0004107 MDJ1 [Candida albicans (taxid:5476)]

 Score = 158 (60.7 bits), Expect = 5.8e-09, P = 5.8e-09
 Identities = 35/68 (51%), Positives = 45/68 (66%)

Query:    78 PYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLID 137
             PY+TL +++ AD+ QIK AY  L K YHPDV        K + AE +F KIQ +YELL D
Sbjct:    48 PYKTLGVDKSADDRQIKKAYYDLVKKYHPDV-------NKEKDAEKRFHKIQESYELLRD 100

Query:   138 EERRRQYD 145
             +E+R QYD
Sbjct:   101 KEKRAQYD 108

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=IEA

GO:0006458 "'de novo' protein folding" evidence=IEA

GO:0000002 "mitochondrial genome maintenance" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0042026 "protein refolding" evidence=IEA

GO:0001671 "ATPase activator activity" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TIGR_CMR|BA_4538 BA_4538 "chaperone protein dnaJ" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 154 (59.3 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 34/67 (50%), Positives = 44/67 (65%)

Query:    79 YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
             YE L L + A +++IK AYRRLAK YHPDV        K E A  KF ++Q AYE+L D+
Sbjct:     7 YEVLGLSKGASKDEIKKAYRRLAKKYHPDV-------SKEENAIEKFKEVQEAYEVLSDD 59

Query:   139 ERRRQYD 145
             ++R QYD
Sbjct:    60 QKRAQYD 66

GO:0009408 "response to heat" evidence=ISS

POMBASE|SPAC1071.09c SPAC1071.09c "DNAJ domain protein, DNAJC9 family (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 151 (58.2 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 56/204 (27%), Positives = 96/204 (47%)

Query:    78 PYETLELERDADEEQIKVAYRRLAKFYHPD-VYDGRGTLEKGETAEAKFIKIQAAYELLI 136
             PY  L +E+DA +E I+ AYR+ A  +HPD ++D     EK   A  +F K+  AY +L 
Sbjct:    32 PYSVLGVEKDASDELIRRAYRKKALQHHPDRIHDE----EKKVEARIEFDKVAIAYGVLS 87

Query:   137 DEERRRQYDMDNRVNPMKASQA--WMEWLIKKRKAFDQRGDM----AIAAWAEQQQLELN 190
             D++RR+ YD   ++    A     W EWL +  +       +    A   ++E+++ ++ 
Sbjct:    88 DKKRRKHYDKTGQLRETDADIDFDWKEWLDELYQGVVSGETLNEFKASYQYSEEEKCDV- 146

Query:   191 LRARRLSRSKIDPEEERKILAREMKAS---KEYFTNTMKRHTLVLKKRDLMRRKAEEEKR 247
             L+A    +  +D   E +++  E+      ++   N +K   +   KR     K  + + 
Sbjct:   147 LKAYEKGKGSMDVILE-EVMCCEISDEDRFRQVINNAIKDGKISKYKRFAPNEKKRKRRA 205

Query:   248 KAIGR-LLAAEGL--ELDTDDEAK 268
             KA  R    AE L  EL  D+  K
Sbjct:   206 KAAEREAQEAEELSMELGLDENLK 229

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0006457 "protein folding" evidence=NAS

GO:0030544 "Hsp70 protein binding" evidence=ISM

TAIR|locus:2013940 AT1G71000 [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 29/68 (42%), Positives = 42/68 (61%)

Query:    79 YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
             YE L +  D+  EQI+ AY +LAK +HPD +  +     GE A+ +F +IQ AY +L DE
Sbjct:    10 YEILGVAVDSSAEQIRRAYHKLAKIWHPDRWT-KDPFRSGE-AKRRFQQIQEAYSVLSDE 67

Query:   139 ERRRQYDM 146
              +R  YD+
Sbjct:    68 RKRSSYDV 75

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006457 "protein folding" evidence=ISS;RCA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2135159 J11 "AT4G36040" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 36/98 (36%), Positives = 50/98 (51%)

Query:    77 SPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLI 136
             S Y+ LE+   A  + IK AYRRLA+  HPDV    GT     ++  +F+KI AAY  L 
Sbjct:    65 SLYDVLEVPLGATSQDIKSAYRRLARICHPDV---AGTDRTSSSSADEFMKIHAAYCTLS 121

Query:   137 DEERRRQYD--MDNRVNPMKASQAWMEWLIKKRKAFDQ 172
             D E+R  YD  M  R  P+    + +   + +    DQ
Sbjct:   122 DPEKRSVYDRRMLRRSRPLTVGTSGLGSYVGRNWETDQ 159

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0009536 "plastid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00015296001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (272 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00017724001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (538 aa)			•						0.467
	GSVIVG00022013001	SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (667 aa)			•						0.461
	GSVIVG00017185001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (482 aa)			•						0.455
	GSVIVG00001482001	SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (103 aa)			•						0.454
	GSVIVG00004141001	SubName- Full=Chromosome undetermined scaffold_611, whole genome shotgun sequence; (468 aa)			•						0.450
	GSVIVG00012517001	SubName- Full=Chromosome undetermined scaffold_388, whole genome shotgun sequence; Flags- Fragm [...] (372 aa)			•						0.447
	GSVIVG00027610001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (105 aa)			•						0.446
	GSVIVG00005738001	SubName- Full=Chromosome chr3 scaffold_157, whole genome shotgun sequence; (626 aa)			•						0.445
	GSVIVG00022731001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (655 aa)			•						0.441
	GSVIVG00037232001	SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (658 aa)			•						0.440

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	268
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-22
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	3e-21
pfam00226	63	pfam00226, DnaJ, DnaJ domain	2e-19
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	1e-17
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	7e-17
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	4e-16
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	2e-15
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	6e-15
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	7e-15
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	7e-15
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	1e-14
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	2e-14
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	4e-14
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	2e-12
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	2e-12
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	8e-12
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	1e-11
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	2e-11
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	2e-11
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	2e-11
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	2e-11
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	3e-11
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	5e-11
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	6e-11
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	8e-11
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	2e-10
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	3e-10
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	3e-10
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	7e-10
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	9e-10
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	1e-09
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	2e-09
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	5e-09
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	9e-09
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	1e-08
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	4e-08
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	4e-07
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	5e-05

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 95.0 bits (237), Expect = 1e-22
 Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 6/68 (8%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + +DA EE+IK AYR+LAK YHPD   G       + AE KF +I  AYE+L D 
Sbjct: 7   YEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD------KEAEEKFKEINEAYEVLSDP 60

Query: 139 ERRRQYDM 146
           E+R  YD 
Sbjct: 61  EKRAAYDQ 68

Length = 371

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 91.1 bits (227), Expect = 3e-21
 Identities = 35/68 (51%), Positives = 43/68 (63%), Gaps = 7/68 (10%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + +DA EE+IK AYR+LAK YHPD         K + AE KF +I  AYE+L D 
Sbjct: 3   YEILGVSKDASEEEIKKAYRKLAKKYHPDR-------NKDKEAEEKFKEINEAYEVLSDP 55

Query: 139 ERRRQYDM 146
           E+R QYD 
Sbjct: 56  EKRAQYDQ 63

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 79.5 bits (197), Expect = 2e-19
 Identities = 33/68 (48%), Positives = 40/68 (58%), Gaps = 6/68 (8%)

Query: 78  PYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLID 137
            YE L + RDA +E+IK AYR+LA  YHPD   G         AE KF +I  AYE+L D
Sbjct: 2   YYEILGVPRDASDEEIKKAYRKLALKYHPDKNPG------DPAAEEKFKEINEAYEVLSD 55

Query: 138 EERRRQYD 145
            E+R  YD
Sbjct: 56  PEKRAIYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 81.3 bits (202), Expect = 1e-17
 Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 6/67 (8%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + R+A E++IK AYR+LA  YHPD    R   +K   AE KF +I+ AYE+L D 
Sbjct: 7   YEVLGVSRNASEDEIKKAYRKLAMKYHPD----RNPGDK--EAEEKFKEIKEAYEVLSDP 60

Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 61  QKRAAYD 67

Length = 371

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 79.1 bits (195), Expect = 7e-17
 Identities = 37/73 (50%), Positives = 48/73 (65%), Gaps = 6/73 (8%)

Query: 73  ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAY 132
           A +K  YE L ++R+A EE+IK AYRRLAK YHPD+  G       + AE KF +I  AY
Sbjct: 2   AAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPG------DKEAEQKFKEINEAY 55

Query: 133 ELLIDEERRRQYD 145
           E+L D ++R QYD
Sbjct: 56  EILSDPQKRAQYD 68

Length = 386

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 76.7 bits (189), Expect = 4e-16
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 7/67 (10%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y+ L + +DA +++IK AYR+L+K YHPD       + K   AE K+ ++Q AYE L D 
Sbjct: 7   YDRLGVSKDASQDEIKKAYRKLSKKYHPD-------INKEPGAEEKYKEVQEAYETLSDP 59

Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 60  QKRAAYD 66

Length = 380

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 74.7 bits (184), Expect = 2e-15
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 7/68 (10%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y  L + R+A + +IK AYR+LA+  HPDV          E A+ KF +I  AYE+L D 
Sbjct: 6   YGLLGVSRNASDAEIKRAYRKLARELHPDVNP-------DEEAQEKFKEISVAYEVLSDP 58

Query: 139 ERRRQYDM 146
           E+RR  D+
Sbjct: 59  EKRRIVDL 66

Length = 378

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 73.5 bits (181), Expect = 6e-15
 Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 7/67 (10%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + RDAD++++K AYRRLA+ YHPDV        K   AE +F +I  AYE+L D 
Sbjct: 6   YEILGVSRDADKDELKRAYRRLARKYHPDV-------NKEPGAEDRFKEINRAYEVLSDP 58

Query: 139 ERRRQYD 145
           E R +YD
Sbjct: 59  ETRARYD 65

Length = 374

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 73.2 bits (180), Expect = 7e-15
 Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 7/67 (10%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + + A +++IK AYR+L+K YHPD+        K E A+ KF +I  AYE+L D+
Sbjct: 7   YEVLGVSKSASKDEIKKAYRKLSKKYHPDI-------NKEEGADEKFKEISEAYEVLSDD 59

Query: 139 ERRRQYD 145
           ++R QYD
Sbjct: 60  QKRAQYD 66

Length = 376

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 66.8 bits (164), Expect = 7e-15
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 78  PYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLID 137
            Y+ L +  DA +E+IK AYR+LA  YHPD             AE KF +I  AYE+L D
Sbjct: 2   YYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD------PEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 72.5 bits (178), Expect = 1e-14
 Identities = 33/73 (45%), Positives = 51/73 (69%), Gaps = 7/73 (9%)

Query: 73  ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAY 132
           A+++  YE L ++R+AD+++IK AYR+LA+ YHPDV +  G       AE KF +I  AY
Sbjct: 2   AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEG-------AEEKFKEISEAY 54

Query: 133 ELLIDEERRRQYD 145
            +L D+E+R++YD
Sbjct: 55  AVLSDDEKRQRYD 67

Length = 378

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 65.7 bits (161), Expect = 2e-14
 Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 5/65 (7%)

Query: 76  KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
              YE L + RDA  ++IK AYR+LA  YHPD    +   +K E AE KF +I  AYE+L
Sbjct: 1   TDYYEILGVPRDASLDEIKKAYRKLALKYHPD----KNPGDK-EEAEEKFKEINEAYEVL 55

Query: 136 IDEER 140
            D E+
Sbjct: 56  SDPEK 60

Length = 60

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 71.0 bits (174), Expect = 4e-14
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 7/72 (9%)

Query: 75  EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL 134
           +K  YE L + R+A +E+IK AYRRLA+ YHPD         K   AE KF +I  AY++
Sbjct: 2   KKDYYEILGVSRNATQEEIKKAYRRLARKYHPD-------FNKNPEAEEKFKEINEAYQV 54

Query: 135 LIDEERRRQYDM 146
           L D E+R+ YD 
Sbjct: 55  LSDPEKRKLYDQ 66

Length = 382

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 66.4 bits (162), Expect = 2e-12
 Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 10/72 (13%)

Query: 74  DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYE 133
           D +  YE L L +D    +IK AYR+LA  +HPD         KG   E KF +I  AYE
Sbjct: 26  DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPD---------KGGDPE-KFKEISRAYE 75

Query: 134 LLIDEERRRQYD 145
           +L D E+R+ YD
Sbjct: 76  VLSDPEKRKIYD 87

Length = 421

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 65.7 bits (160), Expect = 2e-12
 Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 5/70 (7%)

Query: 76  KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
           K  Y+ L ++R+A +E IK A+R LAK +HPD++ G     K E AE KF +I  AYE+L
Sbjct: 3   KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPG----NKAE-AEEKFKEISEAYEVL 57

Query: 136 IDEERRRQYD 145
            D ++RRQYD
Sbjct: 58  SDPQKRRQYD 67

Length = 365

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 63.7 bits (155), Expect = 8e-12
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 7/70 (10%)

Query: 76  KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
           K  Y  + ++   D + IK AYRRLA+ YHPDV        K   AEA+F ++  A+E+L
Sbjct: 4   KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDV-------SKEPDAEARFKEVAEAWEVL 56

Query: 136 IDEERRRQYD 145
            DE+RR +YD
Sbjct: 57  SDEQRRAEYD 66

Length = 306

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 8/72 (11%)

Query: 75  EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGET-AEAKFIKIQAAYE 133
           EK  Y+ L + +DA E +IK AYR+LA+ YHPD         KG+  AE +F +I  AY+
Sbjct: 8   EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDA-------NKGDAKAEERFKEISEAYD 60

Query: 134 LLIDEERRRQYD 145
           +L DE++R++YD
Sbjct: 61  VLSDEKKRKEYD 72

Length = 389

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 63.3 bits (154), Expect = 2e-11
 Identities = 32/67 (47%), Positives = 37/67 (55%), Gaps = 7/67 (10%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L L +DA  E IK AYR+LA  YHPD             AE KF +I  AY +L D 
Sbjct: 8   YEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPD-------AEEKFKEISEAYAVLSDA 60

Query: 139 ERRRQYD 145
           E+R QYD
Sbjct: 61  EKRAQYD 67

Length = 377

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 63.0 bits (153), Expect = 2e-11
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 7/71 (9%)

Query: 75  EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL 134
           +K  YE L + + A E++I+ AYR+LAK YHPD       L K   A  K ++I  A ++
Sbjct: 3   KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPD-------LNKSPDAHDKMVEINEAADV 55

Query: 135 LIDEERRRQYD 145
           L+D+++R+QYD
Sbjct: 56  LLDKDKRKQYD 66

Length = 372

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 62.9 bits (153), Expect = 2e-11
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 75  EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL 134
           +K  YE L + R+A +E+IK AY+RL K +HPD    R    + E AE KF +IQ AYE+
Sbjct: 3   KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPD----RHPENRKE-AEQKFKEIQEAYEV 57

Query: 135 LIDEERRRQYD 145
           L D ++R  YD
Sbjct: 58  LSDPQKRAMYD 68

Length = 369

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 62.9 bits (153), Expect = 2e-11
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 6/67 (8%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + R AD+++IK AYR+LA  YHPD           + AE  F ++  AYE+L ++
Sbjct: 6   YEVLGVSRSADKDEIKKAYRKLALKYHPDKNPD------NKEAEEHFKEVNEAYEVLSND 59

Query: 139 ERRRQYD 145
           ++RR+YD
Sbjct: 60  DKRRRYD 66

Length = 397

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 62.5 bits (152), Expect = 3e-11
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 73  ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAY 132
             ++  YE L + RDA E++IK AYR+LA  YHPD             AE KF +   AY
Sbjct: 1   MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPD------NPEAEQKFKEAAEAY 54

Query: 133 ELLIDEERRRQYD 145
           E+L D E+R +YD
Sbjct: 55  EVLRDAEKRARYD 67

Length = 373

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 61.6 bits (149), Expect = 5e-11
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 7/74 (9%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L ++R+A  +++K AYR+LA+ YHPDV        K   AE KF +++ AY+ L D 
Sbjct: 7   YEVLGVDRNASVDEVKKAYRKLARKYHPDV-------NKAPDAEDKFKEVKEAYDTLSDP 59

Query: 139 ERRRQYDMDNRVNP 152
           +++  YD     +P
Sbjct: 60  QKKAHYDQFGHTDP 73

Length = 371

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 61.7 bits (150), Expect = 6e-11
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 6/70 (8%)

Query: 76  KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
           K  YE L LE+ A +++IK A+R+LA  YHPD    +G  E    AE KF +I  AY++L
Sbjct: 4   KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPD--KNKGNKE----AEEKFKEINEAYQVL 57

Query: 136 IDEERRRQYD 145
            D +++ QYD
Sbjct: 58  SDPQKKAQYD 67

Length = 380

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 60.7 bits (147), Expect = 8e-11
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 7/70 (10%)

Query: 76  KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
           K  Y  L + ++A +++IK A+++LA+ YHPDV        K   AE KF +I  AY +L
Sbjct: 4   KDYYAILGVPKNASQDEIKKAFKKLARKYHPDV-------NKSPGAEEKFKEINEAYTVL 56

Query: 136 IDEERRRQYD 145
            D E+RR YD
Sbjct: 57  SDPEKRRIYD 66

Length = 291

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 60.2 bits (146), Expect = 2e-10
 Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + RDA EE+IK +YR+LA  YHPD   G       + AE  F +   AYE+L D 
Sbjct: 7   YEILGVTRDASEEEIKKSYRKLAMKYHPDRNPG------DKEAEELFKEAAEAYEVLSDP 60

Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 61  KKRGIYD 67

Length = 366

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 59.5 bits (144), Expect = 3e-10
 Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 7/67 (10%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + R A  ++IK AYR+LA  YHPD         K + A  KF +I  AY +L D 
Sbjct: 5   YELLGVSRTASADEIKSAYRKLALKYHPD-------RNKEKGAAEKFAQINEAYAVLSDA 57

Query: 139 ERRRQYD 145
           E+R  YD
Sbjct: 58  EKRAHYD 64

Length = 371

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 59.5 bits (144), Expect = 3e-10
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y  L + + A  E+IK AYR+LA  YHPD   G         AE +F ++  AYE+L D 
Sbjct: 4   YTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDA------EAEKRFKEVSEAYEVLSDA 57

Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 58  QKRESYD 64

Length = 391

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 57.5 bits (138), Expect = 7e-10
 Identities = 34/80 (42%), Positives = 43/80 (53%), Gaps = 5/80 (6%)

Query: 73  ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAY 132
           +D    YE L +  +A  E+IK AYR+LA  YHPD   G       + AE KF +I  AY
Sbjct: 3   SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGD-----PKVAEEKFKEINEAY 57

Query: 133 ELLIDEERRRQYDMDNRVNP 152
           E+L D ERR +YD     N 
Sbjct: 58  EILSDPERRAEYDKIGADNY 77

Length = 237

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 58.7 bits (141), Expect = 9e-10
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 7/67 (10%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L ++RDADE++IK A+R+LAK YHPD         K   A + F +I  A ++L + 
Sbjct: 5   YEVLGIDRDADEQEIKKAFRKLAKKYHPDR-------NKAPDAASIFAEINEANDVLSNP 57

Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 58  KKRANYD 64

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 72  WADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAA 131
           W  EK  Y+ L +  DA  E+IK AYR+LA+  HPD   G         AE +F  +  A
Sbjct: 6   WV-EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPG------DPAAEERFKAVSEA 58

Query: 132 YELLIDEERRRQYD 145
           +++L D  +R++YD
Sbjct: 59  HDVLSDPAKRKEYD 72

Length = 392

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 56.9 bits (137), Expect = 2e-09
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 6/71 (8%)

Query: 75  EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL 134
           E+S Y+ L + + A++E+IK AYR+LA  YHPD   G       + +E KF +   AYE+
Sbjct: 3   ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKG------NKESEEKFKEATEAYEI 56

Query: 135 LIDEERRRQYD 145
           L D ++R+ YD
Sbjct: 57  LRDPKKRQAYD 67

Length = 372

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 55.8 bits (134), Expect = 5e-09
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 7/67 (10%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y+ L + + A +  +K AY +LAK YHPD  D +        AE KF +I AAY++L DE
Sbjct: 6   YQILGVSKTASQADLKKAYLKLAKQYHPDTTDAK-------DAEKKFKEINAAYDVLKDE 58

Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 59  QKRAAYD 65

Length = 372

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 55.2 bits (133), Expect = 9e-09
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 73  ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAY 132
           A+++  YE L + + A  ++IK AYR+ A  YHPD   G       + AE KF +   AY
Sbjct: 2   AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPG------DKEAEEKFKEAAEAY 55

Query: 133 ELLIDEERRRQYD 145
           ++L D ++R +YD
Sbjct: 56  DVLSDPDKRSRYD 68

Length = 386

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 55.0 bits (132), Expect = 1e-08
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 6/71 (8%)

Query: 75  EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL 134
           ++  YE L L + A +++IK AYR++A  YHPD   G       + AE+ F +   AYE+
Sbjct: 2   KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKG------NKEAESIFKEATEAYEV 55

Query: 135 LIDEERRRQYD 145
           LID+ +R QYD
Sbjct: 56  LIDDNKRAQYD 66

Length = 365

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 53.2 bits (127), Expect = 4e-08
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 6/71 (8%)

Query: 75  EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL 134
           E S YE LE+E+ +++E IK +YR+LA  YHPD   G       + AE KF  I  AY +
Sbjct: 2   ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAG------DKEAEEKFKLINEAYGV 55

Query: 135 LIDEERRRQYD 145
           L DE++R  YD
Sbjct: 56  LSDEKKRALYD 66

Length = 369

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 50.3 bits (120), Expect = 4e-07
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 78  PYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLID 137
           PYE L +++D  E  IK  YR L+  +HPD         + E  E K+  I  AY LL D
Sbjct: 100 PYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEY-EEKYKTITKAYGLLTD 158

Query: 138 EERRRQY 144
           ++RR  Y
Sbjct: 159 KKRRENY 165

Length = 610

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTL--EKGETAEAKFIKIQAAYELLI 136
           Y+ L +    D+++IK AYR+L   +HPD    +G L  E  E A+ K  +IQAAYE LI
Sbjct: 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKG-LPPEMMEMAKEKAQEIQAAYE-LI 260

Query: 137 DEERR 141
            +++ 
Sbjct: 261 KKQKG 265

Length = 267

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	268
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.97
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.93
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.88
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	99.87
PRK14288	369	chaperone protein DnaJ; Provisional	99.84
PRK14296	372	chaperone protein DnaJ; Provisional	99.83
PRK14286	372	chaperone protein DnaJ; Provisional	99.82
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.82
PRK14285	365	chaperone protein DnaJ; Provisional	99.81
PRK14287	371	chaperone protein DnaJ; Provisional	99.8
PRK14282	369	chaperone protein DnaJ; Provisional	99.79
PRK14294	366	chaperone protein DnaJ; Provisional	99.79
PRK14276	380	chaperone protein DnaJ; Provisional	99.79
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.79
PRK14301	373	chaperone protein DnaJ; Provisional	99.79
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.79
PRK14278	378	chaperone protein DnaJ; Provisional	99.78
PRK14298	377	chaperone protein DnaJ; Provisional	99.78
PRK14279	392	chaperone protein DnaJ; Provisional	99.78
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.78
PRK14297	380	chaperone protein DnaJ; Provisional	99.77
PRK14284	391	chaperone protein DnaJ; Provisional	99.77
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.77
PRK14291	382	chaperone protein DnaJ; Provisional	99.77
PRK14281	397	chaperone protein DnaJ; Provisional	99.76
PRK14280	376	chaperone protein DnaJ; Provisional	99.76
PRK10767	371	chaperone protein DnaJ; Provisional	99.76
PRK14277	386	chaperone protein DnaJ; Provisional	99.75
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.75
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.74
PRK14283	378	chaperone protein DnaJ; Provisional	99.74
PRK14290	365	chaperone protein DnaJ; Provisional	99.74
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.74
PRK14299	291	chaperone protein DnaJ; Provisional	99.73
PRK14295	389	chaperone protein DnaJ; Provisional	99.73
PRK14293	374	chaperone protein DnaJ; Provisional	99.71
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.7
PRK14289	386	chaperone protein DnaJ; Provisional	99.69
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.69
PRK14300	372	chaperone protein DnaJ; Provisional	99.68
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.68
PRK14292	371	chaperone protein DnaJ; Provisional	99.67
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.65
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.65
PHA03102	153	Small T antigen; Reviewed	99.63
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.62
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.57
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.56
PRK03578	176	hscB co-chaperone HscB; Provisional	99.53
PRK05014	171	hscB co-chaperone HscB; Provisional	99.53
PRK01356	166	hscB co-chaperone HscB; Provisional	99.51
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.48
PRK00294	173	hscB co-chaperone HscB; Provisional	99.48
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.43
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.41
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.36
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.36
PHA02624	647	large T antigen; Provisional	99.33
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.32
PTZ00100	116	DnaJ chaperone protein; Provisional	99.3
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.21
PRK01773	173	hscB co-chaperone HscB; Provisional	99.21
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	99.1
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.09
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.2
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.17
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	97.85
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	97.56
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.11
KOG0431	453	consensus Auxilin-like protein and related protein	96.87
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.16
KOG0724	335	consensus Zuotin and related molecular chaperones	95.05
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	93.54
PF13446	62	RPT: A repeated domain in UCH-protein	81.96
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	81.51

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.2e-29  Score=237.32  Aligned_cols=159  Identities=28%  Similarity=0.391  Sum_probs=115.7

Q ss_pred             CCCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC--
Q 024429           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV--  150 (268)
Q Consensus        73 ~~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~--  150 (268)
                      ...++||+||||.++|++.+||++||+|||+||||+++..     .++++++|+.|+.||+|||||..|+|||++...  
T Consensus         5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~-----ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil   79 (508)
T KOG0717|consen    5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDR-----IEEATQQFQLIQAAYEVLSDPQERAWYDSHREQIL   79 (508)
T ss_pred             hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCcc-----HHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHh
Confidence            3568999999999999999999999999999999998875     688999999999999999999999999997531  


Q ss_pred             --CCC---cchHHHHHHHHH-hhhccccc--------hH----------------------------------HHHHHHh
Q 024429          151 --NPM---KASQAWMEWLIK-KRKAFDQR--------GD----------------------------------MAIAAWA  182 (268)
Q Consensus       151 --~~~---~~~~~~~~~~~~-~~~~f~~~--------~~----------------------------------~f~~~~~  182 (268)
                        .+.   ....+.+.||.. +..+|+..        ++                                  -|+.+|.
T Consensus        80 ~~~~s~~~~~~~dlf~ff~~~~y~gy~~~~~gfy~vy~dvf~~~~~~e~~~~~d~~~~ap~fg~~~t~ye~~~~fY~~W~  159 (508)
T KOG0717|consen   80 RGKNSDTGVQIEDLFQFFTSSCYIGYENTSAGFYRVYQDVFNALASDELPFLGDSKLLYPLFGYSTTDYEQVVPFYQFWL  159 (508)
T ss_pred             cCCCCccccchHHHHHHhhhhhhcccccccchhHHHHHHHHHHHhhhhhhhccCCccccccccCCCCcHHHHHHHHHHHH
Confidence              111   112223333221 11111111        11                                  3445555


Q ss_pred             hhhHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhh
Q 024429          183 EQQQLELNLRARRLSRSKIDPEEERKILAREMKASK----EYFTNTMKRHTLVLKKRD  236 (268)
Q Consensus       183 ~~~~~e~~~~~~~~~~~~~~~r~erR~~ekenk~~r----ke~~~~ir~lv~~~~krD  236 (268)
                      .+...--.............+|..+|+|+++|+++|    +|||.+||.||.||+|||
T Consensus       160 afsT~Ksf~W~d~Ydv~~~~~r~~~R~v~~enkk~rq~ak~eyNe~Vr~lv~fvkKrD  217 (508)
T KOG0717|consen  160 AFSTKKSFEWLDEYDVEEESDRFTRRLMERENKKQRQYARQEYNETVRNLVGFVKKRD  217 (508)
T ss_pred             hhhhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            554431111122222222388999999999999999    999999999999999999

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=4.3e-26  Score=211.92  Aligned_cols=98  Identities=38%  Similarity=0.553  Sum_probs=81.5

Q ss_pred             CCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCCCCC
Q 024429           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPM  153 (268)
Q Consensus        74 ~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~  153 (268)
                      ..+|||+||||+++||.+|||+|||+||++||||+|++      .++|+++|++|++||+|||||++|+.||++|.....
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g------~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~   75 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPG------DKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK   75 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------CHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence            36899999999999999999999999999999999986      478999999999999999999999999999987654


Q ss_pred             cchHHHHHHHHHhhhccc-cchHHHHHHHh
Q 024429          154 KASQAWMEWLIKKRKAFD-QRGDMAIAAWA  182 (268)
Q Consensus       154 ~~~~~~~~~~~~~~~~f~-~~~~~f~~~~~  182 (268)
                      .++..  .+   ....|+ +++|+|..||+
T Consensus        76 ~gg~g--g~---g~~~fgg~~~DIF~~~Fg  100 (371)
T COG0484          76 AGGFG--GF---GFGGFGGDFGDIFEDFFG  100 (371)
T ss_pred             cCCcC--CC---CcCCCCCCHHHHHHHhhc
Confidence            22211  11   112344 57899999995

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=2e-23  Score=190.01  Aligned_cols=72  Identities=40%  Similarity=0.634  Sum_probs=68.2

Q ss_pred             CCCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        73 ~~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ...+|||+||||+++|+..|||+|||+||++||||||++      .+.|.+.|+.|+.||+|||||.+|+.||.+|..
T Consensus        13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpd------dp~A~e~F~~in~AYEVLsDpekRk~YD~~GEe   84 (336)
T KOG0713|consen   13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPD------DPNANEKFKEINAAYEVLSDPEKRKHYDTYGEE   84 (336)
T ss_pred             hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------CHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHh
Confidence            357999999999999999999999999999999999998      688999999999999999999999999998854

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=4.2e-22  Score=176.03  Aligned_cols=175  Identities=21%  Similarity=0.234  Sum_probs=133.1

Q ss_pred             CCCCccccccCCC---CCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           74 DEKSPYETLELER---DADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        74 ~~~d~Y~iLgl~~---~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ...|+|.+|||+.   .+++.+|.++.++.+.+||||+....|    .....+.|++|+.||+||+|+.+|..||+....
T Consensus        41 k~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g----~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~  116 (379)
T COG5269          41 KKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGG----NKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFD  116 (379)
T ss_pred             hhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccC----CCCcHHHHHHHHHHHHHhccHHHHhhccccccc
Confidence            3599999999987   789999999999999999999986655    345789999999999999999999999997654


Q ss_pred             CCCcch--HHHHHHHHHhhhccccc---------------------hHHHHHHHhhhhHHHHHHHHHHhhhccCCCHHHH
Q 024429          151 NPMKAS--QAWMEWLIKKRKAFDQR---------------------GDMAIAAWAEQQQLELNLRARRLSRSKIDPEEER  207 (268)
Q Consensus       151 ~~~~~~--~~~~~~~~~~~~~f~~~---------------------~~~f~~~~~~~~~~e~~~~~~~~~~~~~~~r~er  207 (268)
                      ....++  ....+||..+.+.|+..                     .+-|+.||.++.+.--.+...+.-...+++|.-.
T Consensus       117 advppp~~~t~~~Ffe~w~pvFe~earFSkKqPvPsLg~~dss~keVe~FY~FW~nFdSWRtFE~lded~pdd~e~rD~k  196 (379)
T COG5269         117 ADVPPPRIYTPDEFFEVWEPVFEREARFSKKQPVPSLGPSDSSLKEVEEFYEFWSNFDSWRTFEPLDEDYPDDMEERDRK  196 (379)
T ss_pred             cCCCCccCCCchhHHHHHHHHHHhhhhccccCCCCCCCCchhHHHHHHHHHHHHHhccccccccchhhhcCcchhhhhhH
Confidence            332222  22244555555555522                     4568899999987522222222223335788999


Q ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHhhh--hhhhhhHHHHHHHHHH
Q 024429          208 KILAREMKASK----EYFTNTMKRHTLVLKKRD--LMRRKAEEEKRKAIGR  252 (268)
Q Consensus       208 R~~ekenk~~r----ke~~~~ir~lv~~~~krD--~~~~~~ee~~~k~~~~  252 (268)
                      |..|+.|+..|    -.-|.+|++||+.|.++|  |+-+++++++.+.+++
T Consensus       197 ry~e~KNr~~r~k~K~~DnaRl~~LV~~A~~~DPRIK~fkEqeK~~k~~rk  247 (379)
T COG5269         197 RYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSFKEQEKEMKKIRK  247 (379)
T ss_pred             HHHHhhhHHHHHhhhchhHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhc
Confidence            99999999988    567889999999999999  7778887776666654

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=1.2e-21  Score=184.60  Aligned_cols=70  Identities=46%  Similarity=0.683  Sum_probs=65.0

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ..|||+||||+++||.+|||+|||+||++||||+++.      .+.++++|++|++||+||+||.+|+.||.+|..
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~------~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~   71 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAG------DKEAEEKFKLINEAYGVLSDEKKRALYDRYGKK   71 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC------ccHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence            3799999999999999999999999999999999875      346899999999999999999999999998864

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=3.2e-21  Score=181.92  Aligned_cols=69  Identities=39%  Similarity=0.701  Sum_probs=64.2

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ..|||+||||+++|+.++||+|||+||++||||+++.       +.|+++|+.|++||+||+||.+|+.||.+|..
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-------~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~   71 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-------PDAHDKMVEINEAADVLLDKDKRKQYDQFGHA   71 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------chHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence            4799999999999999999999999999999999863       35889999999999999999999999998864

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=8.1e-21  Score=179.21  Aligned_cols=70  Identities=41%  Similarity=0.707  Sum_probs=65.2

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ..|||+||||+++|+.++||+|||+||++||||+++.      .+.+.++|++|++||+||+||.+|+.||.+|..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~------~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   72 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKG------NKESEEKFKEATEAYEILRDPKKRQAYDQFGKA   72 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------chHHHHHHHHHHHHHHHhccHHHHHHHHHhCch
Confidence            4799999999999999999999999999999999875      356899999999999999999999999998864

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=1.2e-20  Score=173.49  Aligned_cols=70  Identities=43%  Similarity=0.613  Sum_probs=65.3

Q ss_pred             CCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCCCC
Q 024429           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNP  152 (268)
Q Consensus        74 ~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~  152 (268)
                      ..+.||+||||+++||.+|||+|||+|+++||||||++         +.++|++|+.||+|||||++|..||.+|....
T Consensus         2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---------~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~   71 (337)
T KOG0712|consen    2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---------AGEKFKEISQAYEVLSDPEKREIYDQYGEEGL   71 (337)
T ss_pred             cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence            36789999999999999999999999999999999986         68999999999999999999999999986533

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=2.3e-20  Score=175.68  Aligned_cols=69  Identities=42%  Similarity=0.691  Sum_probs=64.6

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        76 ~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      .|||+||||+++||.++||+|||+|+++||||++++      .+.+.++|++|++||+||+||.+|+.||.++..
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~------~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~   71 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKG------NKEAESIFKEATEAYEVLIDDNKRAQYDRFGHT   71 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC------CHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence            699999999999999999999999999999999875      356889999999999999999999999998864

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=9.9e-20  Score=171.78  Aligned_cols=69  Identities=38%  Similarity=0.689  Sum_probs=64.1

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ..|||+||||+++|+.++||+|||+||++||||+++.       +.++++|+.|++||+||+||.+|+.||.+|..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-------~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~   71 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-------PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT   71 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence            4799999999999999999999999999999999863       35789999999999999999999999998865

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=8.9e-20  Score=172.00  Aligned_cols=71  Identities=45%  Similarity=0.644  Sum_probs=65.2

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ..|||+||||+++|+.++||+|||+|+++||||+++..     ...+.++|++|++||+||+||.+|+.||.++..
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-----~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~   73 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPEN-----RKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV   73 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccc-----hhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence            47999999999999999999999999999999998652     345889999999999999999999999998864

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1.1e-19  Score=171.34  Aligned_cols=70  Identities=43%  Similarity=0.648  Sum_probs=65.2

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ..|||+||||+++|+.++||+|||+||++||||+++.      .+.+.+.|+.|++||+||+||.+|+.||.+|..
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~------~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~   72 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPG------DKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHE   72 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC------chHHHHHHHHHHHHHHHhccHHHHHHHHhhccc
Confidence            4799999999999999999999999999999999875      346889999999999999999999999998865

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=9.2e-20  Score=172.51  Aligned_cols=69  Identities=39%  Similarity=0.672  Sum_probs=64.3

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ..|||+||||+++||.+|||+|||+|+++||||+++.       +.++++|+.|++||+||+||.+|+.||.+|..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-------~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   71 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-------PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAA   71 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence            4799999999999999999999999999999999864       35789999999999999999999999998864

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.79  E-value=1.5e-19  Score=172.77  Aligned_cols=67  Identities=42%  Similarity=0.609  Sum_probs=62.2

Q ss_pred             CCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        74 ~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ...|||+||||+++||.++||+|||+||++||||++++          .++|+.|++||+||+||.+|+.||.+|..
T Consensus        26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----------~e~F~~i~~AYevLsD~~kR~~YD~~G~~   92 (421)
T PTZ00037         26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----------PEKFKEISRAYEVLSDPEKRKIYDEYGEE   92 (421)
T ss_pred             cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----------HHHHHHHHHHHHHhccHHHHHHHhhhcch
Confidence            36899999999999999999999999999999999742          48999999999999999999999998864

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1.4e-19  Score=170.82  Aligned_cols=70  Identities=44%  Similarity=0.670  Sum_probs=65.1

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ..|||+||||+++|+.++||+|||+||++||||++++      .+.++++|+.|++||+||+||.+|+.||.+|..
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~------~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~   72 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPD------NPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHA   72 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCC------ChHHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence            4799999999999999999999999999999999875      356889999999999999999999999998864

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.4e-18  Score=158.17  Aligned_cols=72  Identities=39%  Similarity=0.616  Sum_probs=67.8

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCCCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNP  152 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~  152 (268)
                      ..|||+||||+.+++..+|++|||..+++||||||++      ++.|.+.|+.|.+||+||+||..|..||..+....
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~------dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~   75 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPG------DPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGS   75 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCC------ChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Confidence            6899999999999999999999999999999999998      46699999999999999999999999999987643

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=1.9e-19  Score=170.26  Aligned_cols=68  Identities=43%  Similarity=0.661  Sum_probs=63.6

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        76 ~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      .|||+||||+++|+.++||+|||+||++||||+++.       +.++++|+.|++||+||+||.+|+.||.+|..
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-------~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~   70 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-------EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP   70 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-------HHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence            699999999999999999999999999999999863       45889999999999999999999999998854

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=2.2e-19  Score=169.71  Aligned_cols=99  Identities=36%  Similarity=0.479  Sum_probs=75.4

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCCCCCc
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPMK  154 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~~  154 (268)
                      ..|||+||||+++|+.++||+|||+||++||||+++.       +.+.++|+.|++||+||+||.+|+.||.+|......
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-------~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~   76 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-------PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDN   76 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-------hhHHHHHHHHHHHHHHhcchHhhhhhhhcCcccccc
Confidence            5799999999999999999999999999999999863       347899999999999999999999999988642211


Q ss_pred             chHHHHHHHHHhhhccccchHHHHHHHhh
Q 024429          155 ASQAWMEWLIKKRKAFDQRGDMAIAAWAE  183 (268)
Q Consensus       155 ~~~~~~~~~~~~~~~f~~~~~~f~~~~~~  183 (268)
                      .... ...|.  ...|++++++|..||++
T Consensus        77 ~~~~-~~~~~--~~~~~~~~d~f~~~Fgg  102 (377)
T PRK14298         77 QYSA-EDIFR--GADFGGFGDIFEMFFGG  102 (377)
T ss_pred             ccCc-ccccc--cCCcCcchhhhHhhhcC
Confidence            0000 00000  01244566778888764

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=1.7e-19  Score=171.25  Aligned_cols=69  Identities=41%  Similarity=0.660  Sum_probs=64.5

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (268)
                      ..|||+||||+++|+.++||+|||+||++||||++++      .+.+.++|+.|++||+||+||++|+.||.+|.
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~------~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~   76 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPG------DPAAEERFKAVSEAHDVLSDPAKRKEYDETRR   76 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------ChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence            4799999999999999999999999999999999875      35689999999999999999999999999864

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=2.3e-18  Score=149.57  Aligned_cols=87  Identities=37%  Similarity=0.636  Sum_probs=74.2

Q ss_pred             CCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCCCCC
Q 024429           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPM  153 (268)
Q Consensus        74 ~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~  153 (268)
                      ...|+|+||||.++|+..+|++||++|+++||||+++.    +...++++.|+.|+.||+||+|.++|+.||..|..+..
T Consensus        12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~e----ed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~idd~   87 (264)
T KOG0719|consen   12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHE----EDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSIDDE   87 (264)
T ss_pred             cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchh----hhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCCCc
Confidence            35699999999999999999999999999999999962    23678999999999999999999999999999987643


Q ss_pred             cc--hHHHHHHHH
Q 024429          154 KA--SQAWMEWLI  164 (268)
Q Consensus       154 ~~--~~~~~~~~~  164 (268)
                      .+  ..+|.+||.
T Consensus        88 ~~d~~~~~~e~~~  100 (264)
T KOG0719|consen   88 SGDIDEDWLEFWR  100 (264)
T ss_pred             cchhhhHHHHHHH
Confidence            32  345555554

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=2e-19  Score=170.23  Aligned_cols=70  Identities=43%  Similarity=0.693  Sum_probs=65.2

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.      .+.++++|+.|++||+||+||.+|+.||.+|..
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~------~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~   72 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKG------NKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTA   72 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------cHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcc
Confidence            4799999999999999999999999999999999875      356899999999999999999999999998865

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=3.4e-19  Score=169.26  Aligned_cols=69  Identities=39%  Similarity=0.629  Sum_probs=64.3

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        76 ~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      .|||+||||+++|+.++||+|||+||++||||++++      .+.+.++|+.|++||+||+||.+|+.||.++..
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~------~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   69 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPG------DAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKD   69 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------chHHHHHHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence            489999999999999999999999999999999975      356899999999999999999999999998864

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.77  E-value=7.2e-18  Score=170.47  Aligned_cols=72  Identities=28%  Similarity=0.399  Sum_probs=66.2

Q ss_pred             CCCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCCC
Q 024429           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVN  151 (268)
Q Consensus        73 ~~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~  151 (268)
                      ....+||+||||+++|+..+||+|||+||++||||++++       ..+..+|+.|++||+|||||.+|+.||.+|..+
T Consensus       570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~-------~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~G  641 (1136)
T PTZ00341        570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSG-------NEGFHKFKKINEAYQILGDIDKKKMYNKFGYDG  641 (1136)
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------chHHHHHHHHHHHHHHhCCHHHHHHHhhccccc
Confidence            456899999999999999999999999999999999875       247889999999999999999999999998764

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=5.1e-19  Score=167.54  Aligned_cols=69  Identities=46%  Similarity=0.727  Sum_probs=64.2

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ..|||+||||+++|+.++||+|||+|+++||||++++       +.+.++|+.|++||+||+||.+|+.||.++..
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-------~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~   70 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-------PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA   70 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-------ccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence            4799999999999999999999999999999999864       35789999999999999999999999998864

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=9.4e-19  Score=166.50  Aligned_cols=69  Identities=41%  Similarity=0.706  Sum_probs=64.3

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        76 ~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      .|||+||||+++|+.++||+|||+|+++||||++++      ...+++.|+.|++||+||+||.+|+.||.++..
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~------~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~   71 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPD------NKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHA   71 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCC------chHHHHHHHHHHHHHHHhhhhhhhhhhhhccch
Confidence            699999999999999999999999999999999875      346889999999999999999999999998764

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=1.3e-18  Score=164.55  Aligned_cols=69  Identities=42%  Similarity=0.729  Sum_probs=64.2

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.       +.++++|+.|++||+||+||.+|+.||.+|..
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-------~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~   71 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-------EGADEKFKEISEAYEVLSDDQKRAQYDQFGHA   71 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------ccHHHHHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence            4799999999999999999999999999999999864       34889999999999999999999999998865

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=8.2e-19  Score=165.56  Aligned_cols=70  Identities=44%  Similarity=0.720  Sum_probs=64.8

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ..|||+||||+++|+.++||+|||+|+++||||++++      .+.+.+.|+.|++||+||+||.+|+.||.++..
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~------~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~   72 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPG------DKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA   72 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC------cHHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence            4799999999999999999999999999999999875      345889999999999999999999999998764

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.8e-18  Score=164.06  Aligned_cols=70  Identities=51%  Similarity=0.788  Sum_probs=64.9

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ..|||+||||+++|+.++||+|||+||++||||++++      .+.++++|+.|++||+||+||.+|+.||.+|..
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~------~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~   73 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPG------DKEAEQKFKEINEAYEILSDPQKRAQYDQFGHA   73 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCC------chHHHHHHHHHHHHHHHhCCHHHHHHHHhhccc
Confidence            4799999999999999999999999999999999875      356889999999999999999999999998754

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.75  E-value=1.6e-18  Score=123.40  Aligned_cols=64  Identities=58%  Similarity=0.926  Sum_probs=59.7

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhc
Q 024429           77 SPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYD  145 (268)
Q Consensus        77 d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD  145 (268)
                      |||+||||+++++.++||++|+++++++|||++++.     ...+.+.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~-----~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGD-----EAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTST-----HHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhh-----hhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            589999999999999999999999999999998763     1468899999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.4e-18  Score=154.09  Aligned_cols=70  Identities=37%  Similarity=0.591  Sum_probs=66.0

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ..++|+||||+++|+.++|||+||+|+++||||++++      .+++.++|+.||+||+||+||.+|..||.+|..
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd------~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~   99 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGD------NPEATDKFKEINTAYAILSDPTKRNVYDEYGEL   99 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCC------CchhHHHHHHHHHHHHHhcChhhhhhHHHhhhH
Confidence            6899999999999999999999999999999999987      467999999999999999999999999998654

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=2.4e-18  Score=162.73  Aligned_cols=69  Identities=46%  Similarity=0.785  Sum_probs=64.4

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ..|||+||||+++|+.+|||+|||+||++||||+++.       +.++++|+.|++||+||+||.+|+.||.+|..
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-------~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~   72 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-------EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHA   72 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------ccHHHHHHHHHHHHHHhchhHHHHHHhhhccc
Confidence            5799999999999999999999999999999999863       35899999999999999999999999998754

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=2.5e-18  Score=161.99  Aligned_cols=70  Identities=47%  Similarity=0.749  Sum_probs=64.7

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        76 ~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      .|||+||||+++|+.++||+|||+|+++||||+++..     ...+.++|+.|++||+||+||.+|+.||.+|..
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-----~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~   72 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN-----KAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV   72 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----hhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence            6999999999999999999999999999999998652     336899999999999999999999999998865

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.74  E-value=1.7e-18  Score=162.47  Aligned_cols=67  Identities=51%  Similarity=0.744  Sum_probs=62.4

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           77 SPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        77 d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      |||+||||+++|+.++||+|||+|+++||||+++.       +.+.++|+.|++||+||+||.+|+.||.++..
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-------~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~   67 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD-------KEAEEKFKEINEAYEVLSDPEKRAQYDQFGHA   67 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-------ccHHHHHHHHHHHHHHhhChHHHHhhhhcccc
Confidence            79999999999999999999999999999999862       34789999999999999999999999998765

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=3.3e-18  Score=156.54  Aligned_cols=69  Identities=41%  Similarity=0.660  Sum_probs=64.1

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ..|||+||||+++||.++||+|||+|+++||||+++.       +.+.++|+.|++||+||+||.+|+.||.++..
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-------~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~   71 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-------PGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT   71 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence            4799999999999999999999999999999999863       35789999999999999999999999998764

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=3.3e-18  Score=162.31  Aligned_cols=70  Identities=44%  Similarity=0.732  Sum_probs=64.3

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcc----cCCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDM----DNRV  150 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~----~~~~  150 (268)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.      .+.++++|+.|++||+||+||.+|+.||.    +|..
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~------~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~   81 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKG------DAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNG   81 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCC------chhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccc
Confidence            4799999999999999999999999999999999875      34689999999999999999999999998    6643

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=1.8e-17  Score=156.61  Aligned_cols=68  Identities=47%  Similarity=0.727  Sum_probs=63.4

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        76 ~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      .|||+||||+++|+.++||+|||+|+++||||+++.       +.++++|+.|++||+||+||.+|+.||.++..
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-------~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~   70 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-------PGAEDRFKEINRAYEVLSDPETRARYDQFGEA   70 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-------cCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence            699999999999999999999999999999999864       34789999999999999999999999998864

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=1.2e-17  Score=157.13  Aligned_cols=76  Identities=42%  Similarity=0.667  Sum_probs=69.5

Q ss_pred             CCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCCCC
Q 024429           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNP  152 (268)
Q Consensus        74 ~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~  152 (268)
                      ++.+||.+|||+++||.+|||+|||++++.|||||..++   .++..|++.|+.|..||||||||++|+.||.+|..+.
T Consensus         7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dp---d~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL   82 (546)
T KOG0718|consen    7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDP---DQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGL   82 (546)
T ss_pred             chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCCh---hHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccc
Confidence            456999999999999999999999999999999998753   3478899999999999999999999999999987744

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=2.6e-17  Score=156.15  Aligned_cols=70  Identities=37%  Similarity=0.616  Sum_probs=65.1

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++      .+.+.++|+.|++||+||+||.+|+.||.++..
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~------~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~   73 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPG------DKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA   73 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC------ChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence            5799999999999999999999999999999999975      356899999999999999999999999998754

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=3.2e-17  Score=149.67  Aligned_cols=70  Identities=43%  Similarity=0.690  Sum_probs=65.3

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVN  151 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~  151 (268)
                      ..|||+||||+++|+..|||+||++|+++||||.+..       ..+.++|+.|.+||+||+|+++|..||..+...
T Consensus        42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-------~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~  111 (288)
T KOG0715|consen   42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-------KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ  111 (288)
T ss_pred             CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-------cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence            3499999999999999999999999999999999986       369999999999999999999999999988753

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.68  E-value=3.6e-17  Score=154.47  Aligned_cols=68  Identities=41%  Similarity=0.654  Sum_probs=63.2

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        76 ~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      .|||+||||+++||.++||+|||+|+++||||+++.       ..++++|+.|++||+||+||.+|+.||.+|..
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-------~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~   70 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-------KDAEKKFKEINAAYDVLKDEQKRAAYDRFGHD   70 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------cCHHHHHHHHHHHHHHhhhHhHhhHHHhcccc
Confidence            699999999999999999999999999999999863       34788999999999999999999999998754

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.68  E-value=4.8e-17  Score=149.92  Aligned_cols=68  Identities=43%  Similarity=0.644  Sum_probs=62.8

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (268)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.       +.+.+.|+.|++||+||+||.+|+.||.++.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-------~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~   70 (306)
T PRK10266          3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-------PDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ   70 (306)
T ss_pred             cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------ccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            3699999999999999999999999999999999753       3589999999999999999999999998763

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.67  E-value=6.2e-17  Score=152.83  Aligned_cols=68  Identities=41%  Similarity=0.617  Sum_probs=63.5

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        76 ~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      .|||+||||+++|+.++||+|||+|+++||||+++.       ..+.++|+.|++||+||+||.+|+.||.+|..
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~-------~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~   69 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-------KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA   69 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-------hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence            589999999999999999999999999999999863       35889999999999999999999999998865

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.65  E-value=2.1e-16  Score=110.74  Aligned_cols=59  Identities=51%  Similarity=0.720  Sum_probs=54.3

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChh
Q 024429           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEE  139 (268)
Q Consensus        76 ~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~  139 (268)
                      .+||+||||+++++.++||++|+++++++|||++++.     .+.+.+.|..|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~-----~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD-----KEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----hHHHHHHHHHHHHHHHHHcCCC
Confidence            4899999999999999999999999999999998753     3568999999999999999985

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=5e-16  Score=133.86  Aligned_cols=75  Identities=36%  Similarity=0.532  Sum_probs=67.9

Q ss_pred             CCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCCCCC
Q 024429           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPM  153 (268)
Q Consensus        74 ~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~  153 (268)
                      ..-|+|+||||+++++..|||+|||+|+++|||||++..      ...++.|..|++||+.|+|+..|..|..+|..+..
T Consensus        97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~------~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGp  170 (230)
T KOG0721|consen   97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE------EGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGP  170 (230)
T ss_pred             hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc------chhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCc
Confidence            467999999999999999999999999999999999762      45788999999999999999999999999977553


Q ss_pred             c
Q 024429          154 K  154 (268)
Q Consensus       154 ~  154 (268)
                      +
T Consensus       171 q  171 (230)
T KOG0721|consen  171 Q  171 (230)
T ss_pred             c
Confidence            3

>PHA03102 Small T antigen; Reviewed

Probab=99.63  E-value=4.4e-16  Score=129.37  Aligned_cols=71  Identities=20%  Similarity=0.237  Sum_probs=63.1

Q ss_pred             CCCccccccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCCCC
Q 024429           75 EKSPYETLELERDA--DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNP  152 (268)
Q Consensus        75 ~~d~Y~iLgl~~~a--s~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~  152 (268)
                      ...+|+||||+++|  |..+||+|||++++++|||++++          .+.|+.|++||++|+|+.+|..||.+|....
T Consensus         4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----------~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~   73 (153)
T PHA03102          4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----------EEKMKELNTLYKKFRESVKSLRDLDGEEDSS   73 (153)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----------hHHHHHHHHHHHHHhhHHHhccccccCCccc
Confidence            35689999999999  99999999999999999999643          5799999999999999999999999987654


Q ss_pred             Ccc
Q 024429          153 MKA  155 (268)
Q Consensus       153 ~~~  155 (268)
                      ...
T Consensus        74 ~~~   76 (153)
T PHA03102         74 SEE   76 (153)
T ss_pred             ccc
Confidence            443

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.62  E-value=7.6e-16  Score=105.96  Aligned_cols=55  Identities=47%  Similarity=0.697  Sum_probs=51.2

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCC
Q 024429           77 SPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLID  137 (268)
Q Consensus        77 d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsd  137 (268)
                      |||+||||+++++.++||++|+++++++|||++++      .+.+.+.|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~------~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPD------DPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------cHHHHHHHHHHHHHHHHhcC
Confidence            69999999999999999999999999999999875      15689999999999999987

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.57  E-value=5.9e-15  Score=146.68  Aligned_cols=69  Identities=39%  Similarity=0.638  Sum_probs=63.6

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCCC
Q 024429           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVN  151 (268)
Q Consensus        76 ~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~  151 (268)
                      .|||+||||+++|+..+||+|||+|+++||||+++.       +.+...|+.|++||++|+||.+|+.||.++..+
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-------~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG   70 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-------PDAASIFAEINEANDVLSNPKKRANYDKYGHDG   70 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence            699999999999999999999999999999999864       357889999999999999999999999987643

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=4.6e-15  Score=127.10  Aligned_cols=68  Identities=49%  Similarity=0.664  Sum_probs=63.5

Q ss_pred             CCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccc-hHHHHHHHHHHHHHHcCChhHHHhhccc
Q 024429           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGE-TAEAKFIKIQAAYELLIDEERRRQYDMD  147 (268)
Q Consensus        74 ~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~-~a~~~f~~I~~AY~vLsdp~~R~~YD~~  147 (268)
                      ...+||+||||+++|+..+|++|||+++++||||+++..      + .+.+.|+.|++||+||+|+..|..||..
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~------~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~   72 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGD------PKVAEEKFKEINEAYEILSDPERRAEYDKI   72 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc------hhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence            467999999999999999999999999999999999863      3 4889999999999999999999999985

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.53  E-value=1.8e-13  Score=116.71  Aligned_cols=74  Identities=22%  Similarity=0.299  Sum_probs=62.2

Q ss_pred             CCCCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccC
Q 024429           74 DEKSPYETLELERD--ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDN  148 (268)
Q Consensus        74 ~~~d~Y~iLgl~~~--as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~  148 (268)
                      ...|||+||||++.  ++..+|+++|+++++++|||++.+. +..+...+.+.+..||+||+||+||.+|+.|+...
T Consensus         4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~-~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l   79 (176)
T PRK03578          4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAA-GDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHL   79 (176)
T ss_pred             CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-CHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHh
Confidence            35899999999995  6899999999999999999998753 22223446677899999999999999999999643

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.53  E-value=1.3e-14  Score=123.17  Aligned_cols=73  Identities=19%  Similarity=0.313  Sum_probs=62.1

Q ss_pred             CCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCC
Q 024429           76 KSPYETLELERD--ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (268)
Q Consensus        76 ~d~Y~iLgl~~~--as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (268)
                      .|||+||||++.  ++..+|+++|+++++++|||+..+.+ +.+...+.+.|..|++||+||+||.+|+.|+....
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~-~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~   75 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANAS-ERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH   75 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCc-HHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence            489999999996  68899999999999999999987532 22344578899999999999999999999996443

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.51  E-value=2.7e-13  Score=114.56  Aligned_cols=71  Identities=21%  Similarity=0.294  Sum_probs=60.7

Q ss_pred             CCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCC
Q 024429           76 KSPYETLELERD--ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (268)
Q Consensus        76 ~d~Y~iLgl~~~--as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (268)
                      .|||+||||++.  ++..+|+++|+++++++|||++.+.   .+...+.+.+..|++||+||+||.+|+.|+....
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~---~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~   74 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTL---QEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ   74 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCH---HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence            589999999996  7899999999999999999998641   2234455678999999999999999999987654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.48  E-value=9.8e-15  Score=134.05  Aligned_cols=75  Identities=40%  Similarity=0.655  Sum_probs=67.7

Q ss_pred             CCCCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCC
Q 024429           72 WADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (268)
Q Consensus        72 ~~~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (268)
                      ....+|||.||||.++|+..||-+|||++|.+||||-..+   .+++..|+.+|.-|..|-+||+||++|+.||..-+
T Consensus       390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqd---EeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeD  464 (504)
T KOG0624|consen  390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQD---EEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGED  464 (504)
T ss_pred             HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccC---HHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCC
Confidence            3457999999999999999999999999999999999865   34467899999999999999999999999998643

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.48  E-value=6.6e-14  Score=118.97  Aligned_cols=75  Identities=23%  Similarity=0.368  Sum_probs=64.2

Q ss_pred             CCCCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCC
Q 024429           74 DEKSPYETLELERD--ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (268)
Q Consensus        74 ~~~d~Y~iLgl~~~--as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (268)
                      ...+||++|||++.  .+..+|+++||++++++|||++.+. +..+...+.+.|..||+||+||+||.+|+.|+....
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~-~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~   78 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADA-PEREQRLALERSASLNEAYQTLKSPPRRARYLLALS   78 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-cHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence            46899999999996  6789999999999999999998653 223345678899999999999999999999997543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=7.8e-14  Score=130.40  Aligned_cols=77  Identities=35%  Similarity=0.569  Sum_probs=69.2

Q ss_pred             CCCCCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           71 NWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        71 ~~~~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ......|||.||||.++++..+||+|||++++.||||++.++     ..+++.+|+.|.+||.||+||.+|..||+.-..
T Consensus       368 kkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags-----q~eaE~kFkevgeAy~il~d~~kr~r~dsg~dl  442 (486)
T KOG0550|consen  368 KKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS-----QKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDL  442 (486)
T ss_pred             HHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch-----hHHHHHHHHHHHHHHHHhcCHHHHhhcccccch
Confidence            345678999999999999999999999999999999999875     578999999999999999999999999996544


Q ss_pred             CC
Q 024429          151 NP  152 (268)
Q Consensus       151 ~~  152 (268)
                      .+
T Consensus       443 e~  444 (486)
T KOG0550|consen  443 EE  444 (486)
T ss_pred             hh
Confidence            33

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=2e-13  Score=128.82  Aligned_cols=70  Identities=31%  Similarity=0.524  Sum_probs=64.9

Q ss_pred             CCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        74 ~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ...|+|.||||+.++++++||+.||++|...|||||..       +.|++.|+.|+.||++|+|+.+|..||.....
T Consensus       233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~-------~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k  302 (490)
T KOG0720|consen  233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI-------PRAEEAFKKLQVAFEVIGDSVKRKEYDLELKK  302 (490)
T ss_pred             cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC-------hhHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence            37899999999999999999999999999999999973       67999999999999999999999999985543

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=3.4e-13  Score=118.86  Aligned_cols=75  Identities=35%  Similarity=0.562  Sum_probs=67.4

Q ss_pred             hcCCCCCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccC
Q 024429           69 AANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDN  148 (268)
Q Consensus        69 ~~~~~~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~  148 (268)
                      ....+...|.|+||||.++++..+|.+|||+|+++||||+++++       +..+.|..|..||++|.|...|..||-..
T Consensus        26 egLYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~-------e~k~~F~~iAtayeilkd~e~rt~ydyal   98 (329)
T KOG0722|consen   26 EGLYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDP-------ESKKLFVKIATAYEILKDNETRTQYDYAL   98 (329)
T ss_pred             hhhcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCc-------hhhhhhhhhhcccccccchhhHHhHHHHh
Confidence            34568899999999999999999999999999999999999863       45699999999999999999999999765


Q ss_pred             CC
Q 024429          149 RV  150 (268)
Q Consensus       149 ~~  150 (268)
                      ..
T Consensus        99 dh  100 (329)
T KOG0722|consen   99 DH  100 (329)
T ss_pred             cC
Confidence            43

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.36  E-value=7.1e-13  Score=120.02  Aligned_cols=65  Identities=37%  Similarity=0.507  Sum_probs=57.2

Q ss_pred             CCCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCc-cccchHHHHHHHHHHHHHHcCC
Q 024429           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTL-EKGETAEAKFIKIQAAYELLID  137 (268)
Q Consensus        73 ~~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~-~~~~~a~~~f~~I~~AY~vLsd  137 (268)
                      ....++|+||||++++|.++||++||+|+++||||++.+.+.+ +..+.++++|+.|++||++|+.
T Consensus       197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            3458999999999999999999999999999999998766543 3356799999999999999974

>PHA02624 large T antigen; Provisional

Probab=99.33  E-value=1.9e-12  Score=127.35  Aligned_cols=85  Identities=22%  Similarity=0.375  Sum_probs=68.8

Q ss_pred             CCCCccccccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhh--cccC-
Q 024429           74 DEKSPYETLELERDA--DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQY--DMDN-  148 (268)
Q Consensus        74 ~~~d~Y~iLgl~~~a--s~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~Y--D~~~-  148 (268)
                      ...++|+||||+++|  +..+||+|||+++++||||+.+          +.+.|+.|++||++|+|+.+|..|  |.+. 
T Consensus         9 e~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG----------deekfk~Ln~AYevL~d~~k~~r~~fd~~~~   78 (647)
T PHA02624          9 ESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG----------DEEKMKRLNSLYKKLQEGVKSARQSFGTQDS   78 (647)
T ss_pred             HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC----------cHHHHHHHHHHHHHHhcHHHhhhcccccccc
Confidence            457899999999999  9999999999999999999953          268999999999999999999999  5431 


Q ss_pred             CCCCCcchHHHHHHHHHhhh
Q 024429          149 RVNPMKASQAWMEWLIKKRK  168 (268)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~  168 (268)
                      ...+..+...|..|+..+.+
T Consensus        79 ~~v~~~~~~~w~~ww~~f~~   98 (647)
T PHA02624         79 SEIPTYGTPEWEQWWEEFNE   98 (647)
T ss_pred             cCCCCCccccHHHHHHHhhh
Confidence            12233456677777774443

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=1.2e-12  Score=117.22  Aligned_cols=70  Identities=47%  Similarity=0.673  Sum_probs=62.9

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (268)
                      ..|||.||||.++|+..+|++||++++++||||+++..     ...+..+|++|.+||+||+||.+|..||.++.
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~-----~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~   71 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSP-----KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE   71 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCc-----hhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence            47899999999999999999999999999999997653     23455689999999999999999999999986

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.30  E-value=3e-12  Score=101.53  Aligned_cols=52  Identities=27%  Similarity=0.372  Sum_probs=47.3

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLI  136 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLs  136 (268)
                      ..++|+||||++++|.++|+++||+|++++|||+.+          ..+.|..|++||++|.
T Consensus        64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG----------s~~~~~kIneAyevL~  115 (116)
T PTZ00100         64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG----------STYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC----------CHHHHHHHHHHHHHHh
Confidence            479999999999999999999999999999999853          2578999999999995

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.21  E-value=1.2e-11  Score=116.69  Aligned_cols=79  Identities=33%  Similarity=0.448  Sum_probs=71.2

Q ss_pred             CCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCCCCC
Q 024429           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPM  153 (268)
Q Consensus        74 ~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~  153 (268)
                      ..-|+|+||||+.+++..+||++||+|+.++||||.+. -.++...+.++.++.|++||..|+|...|..|=.+|..+..
T Consensus        96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~-mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~p  174 (610)
T COG5407          96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPP-MVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSP  174 (610)
T ss_pred             cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCC-CChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCC
Confidence            35799999999999999999999999999999999886 45556788999999999999999999999999999876543

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.21  E-value=2.5e-11  Score=103.18  Aligned_cols=73  Identities=22%  Similarity=0.324  Sum_probs=63.4

Q ss_pred             CCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCC
Q 024429           76 KSPYETLELERD--ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (268)
Q Consensus        76 ~d~Y~iLgl~~~--as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (268)
                      .|||++|||++.  .+...+++.|+.|.+++|||+..+. ++.++..+.+.-..||+||.||+||.+|+.|=....
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~-~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~   76 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANS-SAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN   76 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCC-CHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence            589999999995  8999999999999999999998764 344456678889999999999999999999976443

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=1.2e-09  Score=93.54  Aligned_cols=68  Identities=29%  Similarity=0.516  Sum_probs=62.0

Q ss_pred             CCCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhc
Q 024429           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYD  145 (268)
Q Consensus        73 ~~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD  145 (268)
                      --+-++|+||.|.|..+.++||+.||+|++..|||+|+.+     .+.|...|..|.+||.+|-|+..|..-+
T Consensus        50 yfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd-----~~rAqkAFdivkKA~k~l~n~~~rkr~~  117 (250)
T KOG1150|consen   50 YFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDD-----AERAQKAFDIVKKAYKLLENDKIRKRCL  117 (250)
T ss_pred             ccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCccc-----HHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            3578999999999999999999999999999999999985     5789999999999999999999776544

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.09  E-value=2.6e-09  Score=89.61  Aligned_cols=61  Identities=23%  Similarity=0.410  Sum_probs=51.7

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCC
Q 024429           88 ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (268)
Q Consensus        88 as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (268)
                      .+..+|+++|+++++++|||+.++.+ ..+...+.+.|..|++||+||+||.+|+.|+....
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~-~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~   63 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGS-AQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH   63 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCC-hhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence            47789999999999999999986542 22345678999999999999999999999998654

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=1.9e-06  Score=88.69  Aligned_cols=58  Identities=29%  Similarity=0.423  Sum_probs=49.3

Q ss_pred             CCCCCCccccccCCCC----CCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCCh
Q 024429           72 WADEKSPYETLELERD----ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE  138 (268)
Q Consensus        72 ~~~~~d~Y~iLgl~~~----as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp  138 (268)
                      .....+.|+||.|+-+    ...+.||++|++|+.+|||||||.         .-++|..+++||+.|+..
T Consensus      1277 ~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE---------GRemFe~VnKAYE~L~~~ 1338 (2235)
T KOG1789|consen 1277 TMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE---------GREMFERVNKAYELLSSE 1338 (2235)
T ss_pred             ccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch---------HHHHHHHHHHHHHHHHHH
Confidence            3456789999999863    345889999999999999999975         589999999999999843

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=1.4e-06  Score=76.46  Aligned_cols=74  Identities=27%  Similarity=0.438  Sum_probs=56.8

Q ss_pred             hhhhhhHHHhhhcCCCCCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHH-HcC
Q 024429           58 FRVNQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYE-LLI  136 (268)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~-vLs  136 (268)
                      ++....++.+.-.+...-..+|.||||..+|+.++++.+|..|++++|||....       +...+.|.+|.+||. ||+
T Consensus        29 fgiirnrll~~~kske~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~-------~adaa~f~qideafrkvlq  101 (342)
T KOG0568|consen   29 FGIIRNRLLHLHKSKEKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE-------EADAARFIQIDEAFRKVLQ  101 (342)
T ss_pred             hhhHHHHHHHHhhhHHHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc-------cccHHHHHHHHHHHHHHHH
Confidence            333333444433222334689999999999999999999999999999999753       446789999999998 877


Q ss_pred             Ch
Q 024429          137 DE  138 (268)
Q Consensus       137 dp  138 (268)
                      ..
T Consensus       102 ~~  103 (342)
T KOG0568|consen  102 EK  103 (342)
T ss_pred             HH
Confidence            43

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=3.2e-05  Score=60.07  Aligned_cols=53  Identities=28%  Similarity=0.265  Sum_probs=45.1

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCCh
Q 024429           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE  138 (268)
Q Consensus        76 ~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp  138 (268)
                      ...-.||||.++++.+.||.|+|+..+..|||+...+          -.-..|++|+++|...
T Consensus        56 ~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP----------YlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   56 REAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP----------YLASKINEAKDLLEGT  108 (112)
T ss_pred             HHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH----------HHHHHHHHHHHHHhcc
Confidence            3445799999999999999999999999999998653          4556899999999753

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=9.8e-05  Score=61.23  Aligned_cols=74  Identities=20%  Similarity=0.297  Sum_probs=58.5

Q ss_pred             CCCCCccccccCCC--CCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhccc
Q 024429           73 ADEKSPYETLELER--DADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMD  147 (268)
Q Consensus        73 ~~~~d~Y~iLgl~~--~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~  147 (268)
                      ....+||.++|...  ...+.-++--|.-..+++|||+...+... +...+.+....|++||.+|.||-.|+.|=..
T Consensus         5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~-~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilk   80 (168)
T KOG3192|consen    5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAG-DTDQASEQSAELNKAYDTLKDPLARARYLLK   80 (168)
T ss_pred             chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccc-cchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            45789999998665  45666677689999999999996543211 1346888999999999999999999999764

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.00026  Score=60.23  Aligned_cols=62  Identities=35%  Similarity=0.477  Sum_probs=53.9

Q ss_pred             CCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccc-cchHHHHHHHHHHHHHHc
Q 024429           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEK-GETAEAKFIKIQAAYELL  135 (268)
Q Consensus        74 ~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~-~~~a~~~f~~I~~AY~vL  135 (268)
                      ...+.|.+||+...++..+|+++|+++...+|||+..+.+.+.+ ...+.+.++.|++||+.+
T Consensus       111 ~~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         111 DREDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             cchhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            34799999999999999999999999999999999877665443 567889999999999854

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=96.87  E-value=0.00093  Score=65.00  Aligned_cols=53  Identities=30%  Similarity=0.406  Sum_probs=41.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhCCCCCCCCCC-ccccchHHHHHHHHHHHHHHcC
Q 024429           84 LERDADEEQIKVAYRRLAKFYHPDVYDGRGT-LEKGETAEAKFIKIQAAYELLI  136 (268)
Q Consensus        84 l~~~as~~eIKkaYrkla~~~HPDk~~~~~~-~~~~~~a~~~f~~I~~AY~vLs  136 (268)
                      |..-.+.++||++|||.+|..||||.+..|. ...+=.+++.|-.+++||....
T Consensus       396 ltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~  449 (453)
T KOG0431|consen  396 LTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN  449 (453)
T ss_pred             hhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence            3334689999999999999999999988752 2224467888888888887654

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.16  E-value=0.0031  Score=53.65  Aligned_cols=72  Identities=25%  Similarity=0.397  Sum_probs=54.2

Q ss_pred             CccccccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCC
Q 024429           77 SPYETLELERDA--DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (268)
Q Consensus        77 d~Y~iLgl~~~a--s~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (268)
                      ++..++|+++.+  ..+.++..|+.+.+.+|||+....+ ..+...+.+.+..++.||.+|.||-.|..|=....
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~-~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~   75 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKAS-EAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA   75 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccc-hHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence            345556666544  4567899999999999999987642 11233466789999999999999999999976443

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=95.05  E-value=0.01  Score=55.31  Aligned_cols=62  Identities=31%  Similarity=0.364  Sum_probs=47.4

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           87 DADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        87 ~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      .++..+|..+|+..++.+||++....  ........+.|++|.+||.||++...|..+|.+...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~   64 (335)
T KOG0724|consen    3 LASEDELRLAYREMALKSHPEKKSFY--EKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWDKF   64 (335)
T ss_pred             cccHHHHHHHHHHHhhhcCcHHHHHH--HHhhhhHHHHHHHHHHHHHHHhccccccchhhhhHH
Confidence            35778899999999999999997410  000124578899999999999997777788877643

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=93.54  E-value=0.14  Score=41.44  Aligned_cols=56  Identities=21%  Similarity=0.166  Sum_probs=40.0

Q ss_pred             CCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChh
Q 024429           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEE  139 (268)
Q Consensus        74 ~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~  139 (268)
                      .......||||++..+.++|.+.|.+|-...+|++.+.          --.-..|..|.+.|....
T Consensus        56 tl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS----------fYLQSKV~rAKErl~~El  111 (127)
T PF03656_consen   56 TLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS----------FYLQSKVFRAKERLEQEL  111 (127)
T ss_dssp             -HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----------HHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC----------HHHHHHHHHHHHHHHHHH
Confidence            34567799999999999999999999999999998643          344557888888887544

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PF13446 RPT: A repeated domain in UCH-protein

Probab=81.96  E-value=2.7  Score=29.21  Aligned_cols=28  Identities=25%  Similarity=0.489  Sum_probs=25.4

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHH
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAK  102 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~  102 (268)
                      ..+.|++|||+++.+.+.|-.+|.....
T Consensus         4 ~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    4 VEEAYEILGIDEDTDDDFIISAFQSKVN   31 (62)
T ss_pred             HHHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence            3567999999999999999999999887

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=81.51  E-value=2.6  Score=33.33  Aligned_cols=53  Identities=17%  Similarity=0.289  Sum_probs=42.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhH
Q 024429           86 RDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEER  140 (268)
Q Consensus        86 ~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~  140 (268)
                      +..+..+++.|.|.+-++.|||....  .|.+....++-++.|+.-.+.|..+..
T Consensus         4 r~~~~~~l~~aLr~Fy~~VHPDlF~~--~P~~k~~Ne~SLk~Ln~~Ld~l~~~~~   56 (112)
T PF14687_consen    4 RNLSSPDLRSALRPFYFAVHPDLFGQ--HPEEKQVNEESLKLLNSYLDSLKKRKS   56 (112)
T ss_pred             hhhhhHHHHHHHHHHHHHhCCccccc--ChHHHHhhHHHHHHHHHHHHHHhccCC
Confidence            34567889999999999999998765  344567778889999988888887553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	268
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		1e-07
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		1e-07
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		3e-07
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		4e-07
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		5e-07
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		6e-07
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		7e-07
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		1e-06
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		3e-06
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		3e-06
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		8e-06
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		1e-05
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		2e-05
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		6e-05
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		1e-04
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		3e-04
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		4e-04
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		4e-04
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		5e-04
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		7e-04

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 78  PYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLID 137
           PY  L + R A +  IK AY++LA+ +HPD         K   AE +FI+I  AYE+L +
Sbjct: 19  PYRVLGVSRTASQADIKKAYKKLAREWHPDK-------NKDPGAEDRFIQISKAYEILSN 71
Query: 138 EERRRQYD 145
           EE+R  YD
Sbjct: 72  EEKRTNYD 79

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
Query: 70  ANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQ 129
           +N  + K  Y  L ++   D + IK AYRRLA+ YHPDV        K   AEAKF  + 
Sbjct: 22  SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDV-------SKENDAEAKFKDLA 74
Query: 130 AAYELLIDEERRRQYD 145
            A+E+L DE+RR +YD
Sbjct: 75  EAWEVLKDEQRRAEYD 90

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y+ L + + A E QIK A+ +LA  YHPD         K   AEAKF +I  AYE L D 
Sbjct: 10  YDILGVPKSASERQIKKAFHKLAMKYHPDK-------NKSPDAEAKFREIAEAYETLSDA 62
Query: 139 ERRRQYDM 146
            RR++YD 
Sbjct: 63  NRRKEYDT 70

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 6/67 (8%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + + A+E +I+ AY+RLA  YHPD   G       + AEAKF +I+ AYE+L D 
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD------KEAEAKFKEIKEAYEVLTDS 59
Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 60  QKRAAYD 66

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 6/67 (8%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y+ L + R+A +++IK AY +LAK YHPD      T +    A+ KF ++  AYE+L DE
Sbjct: 10  YQILGVPRNASQKEIKKAYYQLAKKYHPD------TNKDDPKAKEKFSQLAEAYEVLSDE 63
Query: 139 ERRRQYD 145
            +R+QYD
Sbjct: 64  VKRKQYD 70

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 6/67 (8%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + + A+E +I+ AY+RLA  YHPD   G       + AEAKF +I+ AYE+L D 
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD------KEAEAKFKEIKEAYEVLTDS 59
Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 60  QKRAAYD 66

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 6/67 (8%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + + A+E +I+ AY+RLA  YHPD   G       + AEAKF +I+ AYE+L D 
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD------KEAEAKFKEIKEAYEVLTDS 59
Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 60  QKRAAYD 66

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 7/70 (10%)
Query: 76  KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
           K  Y  + ++   D + IK AYRRLA+ YHPDV        K   AEA+F ++  A+E+L
Sbjct: 5   KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDV-------SKEPDAEARFKEVAEAWEVL 57
Query: 136 IDEERRRQYD 145
            DE+RR +YD
Sbjct: 58  SDEQRRAEYD 67

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + R A +E +K AYRRLA  +HPD     G  E        F  I  AY +L + 
Sbjct: 10  YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATE-------AFKAIGTAYAVLSNP 62
Query: 139 ERRRQYD 145
           E+R+QYD
Sbjct: 63  EKRKQYD 69

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L++ R A  E IK AYR+LA  +HPD        E  E AE +F ++  AYE+L D 
Sbjct: 12  YEVLDVPRQASSEAIKKAYRKLALKWHPDK-----NPENKEEAERRFKQVAEAYEVLSDA 66
Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 67  KKRDIYD 73

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L ++  A  E IK AYR+LA  +HPD        +  E AE KF  +  AYE+L D 
Sbjct: 12  YEVLGVQASASPEDIKKAYRKLALRWHPDK-----NPDNKEEAEKKFKLVSEAYEVLSDS 66
Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 67  KKRSLYD 73

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 76  KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
           K  Y+TL L R A +E+IK AYRR A  YHPD         K   AE KF +I  AY++L
Sbjct: 3   KDYYQTLGLARGASDEEIKRAYRRQALRYHPDK-------NKEPGAEEKFKEIAEAYDVL 55
Query: 136 IDEERRRQYD 145
            D  +R  +D
Sbjct: 56  SDPRKREIFD 65

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L++ R A  + IK AYRR A  +HPD        +  E AE KF ++  AYE+L D+
Sbjct: 5   YEILDVPRSASADDIKKAYRRKALQWHPDK-----NPDNKEFAEKKFKEVAEAYEVLSDK 59
Query: 139 ERRRQYD 145
            +R  YD
Sbjct: 60  HKREIYD 66

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 9/67 (13%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y+ L ++ DA + ++K AYR++A  +HPD         K      +F +I  AYE+L DE
Sbjct: 11  YDVLGVKPDASDNELKKAYRKMALKFHPD---------KNPDGAEQFKQISQAYEVLSDE 61
Query: 139 ERRRQYD 145
           ++R+ YD
Sbjct: 62  KKRQIYD 68

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 75  EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL 134
           E + Y+ L ++ +A +E++K AYR+LA  YHPD         K      KF +I  AYE+
Sbjct: 5   ETTYYDVLGVKPNATQEELKKAYRKLALKYHPD---------KNPNEGEKFKQISQAYEV 55
Query: 135 LIDEERRRQYD 145
           L D ++R  YD
Sbjct: 56  LSDAKKRELYD 66

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 77  SPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLI 136
           S Y  L L+++A  + IK +YR+LA  YHPD        +  E A+ KF +I  A+ +L 
Sbjct: 18  SLYHVLGLDKNATSDDIKKSYRKLALKYHPDK-----NPDNPEAAD-KFKEINNAHAILT 71
Query: 137 DEERRRQYD 145
           D  +R  YD
Sbjct: 72  DATKRNIYD 80

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y+ L +   A + QIK AY R    YHPD   G       E AE +F +I  AY +L   
Sbjct: 20  YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSG-----SAEAAE-RFTRISQAYVVLGSA 73
Query: 139 ERRRQYD 145
             RR+YD
Sbjct: 74  TLRRKYD 80

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y  L + + A   +I+ A+++LA   HPD             A   F+KI  AYE+L DE
Sbjct: 24  YSLLGVSKTASSREIRQAFKKLALKLHPD------KNPNNPNAHGDFLKINRAYEVLKDE 77
Query: 139 ERRRQYD 145
           + R++YD
Sbjct: 78  DLRKKYD 84

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y  L + + A   +I+ A+++LA   HPD             A   F+KI  AYE+L DE
Sbjct: 5   YSLLGVSKTASSREIRQAFKKLALKLHPD------KNPNNPNAHGDFLKINRAYEVLKDE 58
Query: 139 ERRRQYD 145
           + R++YD
Sbjct: 59  DLRKKYD 65

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDG---RGTLEKGETAEAKFIKIQAAYELL 135
           Y  L  +  A+   +K  Y++L   YHPD        GT+E+      KFI+I  A+++L
Sbjct: 19  YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEE---CMQKFIEIDQAWKIL 75
Query: 136 IDEERRRQYDMDNRVNP 152
            +EE +++YD+  R  P
Sbjct: 76  GNEETKKKYDL-QRSGP 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	268
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	3e-22
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	6e-22
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	1e-19
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	3e-19
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	7e-19
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	1e-18
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	2e-18
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	4e-18
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	5e-18
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	5e-18
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	7e-18
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	7e-18
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	2e-17
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	2e-17
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	3e-17
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	4e-17
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	2e-16
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	6e-16
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	1e-15
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	6e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-14
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	2e-14
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	7e-14
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	7e-14
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	7e-13
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	2e-11
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	7e-10
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	1e-08
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	3e-08
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	8e-08
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	2e-07
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	2e-07
2guz_A	71	Mitochondrial import inner membrane translocase su	3e-06
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 93.1 bits (232), Expect = 3e-22
 Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 7/72 (9%)

Query: 74  DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYE 133
           + K  Y  L ++   D + IK AYRRLA+ YHPDV        K   AEAKF  +  A+E
Sbjct: 26  ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDV-------SKENDAEAKFKDLAEAWE 78

Query: 134 LLIDEERRRQYD 145
           +L DE+RR +YD
Sbjct: 79  VLKDEQRRAEYD 90

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 88.4 bits (219), Expect = 6e-22
 Identities = 23/72 (31%), Positives = 37/72 (51%)

Query: 75  EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL 134
           +K  Y  L  +  A+   +K  Y++L   YHPD           E    KFI+I  A+++
Sbjct: 9   KKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKI 68

Query: 135 LIDEERRRQYDM 146
           L +EE +R+YD+
Sbjct: 69  LGNEETKREYDL 80

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 80.5 bits (199), Expect = 1e-19
 Identities = 21/68 (30%), Positives = 35/68 (51%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y  L  +  A+   +K  Y++L   YHPD           E    KFI+I  A+++L +E
Sbjct: 19  YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 139 ERRRQYDM 146
           E +++YD+
Sbjct: 79  ETKKKYDL 86

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 79.0 bits (195), Expect = 3e-19
 Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 7/73 (9%)

Query: 73  ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAY 132
           A +  PY  L + R A +  IK AY++LA+ +HPD         K   AE +FI+I  AY
Sbjct: 14  ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDK-------NKDPGAEDRFIQISKAY 66

Query: 133 ELLIDEERRRQYD 145
           E+L +EE+R  YD
Sbjct: 67  EILSNEEKRTNYD 79

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 78.4 bits (194), Expect = 7e-19
 Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 6/67 (8%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L + + A+E +I+ AY+RLA  YHPD   G       + AEAKF +I+ AYE+L D 
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG------DKEAEAKFKEIKEAYEVLTDS 59

Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 60  QKRAAYD 66

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 80.7 bits (199), Expect = 1e-18
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 76  KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
           ++ Y  L + + A   +I+ A+++LA   HPD             A   F+KI  AYE+L
Sbjct: 2   QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPN------NPNAHGDFLKINRAYEVL 55

Query: 136 IDEERRRQYD 145
            DE+ R++YD
Sbjct: 56  KDEDLRKKYD 65

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 77.0 bits (190), Expect = 2e-18
 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L++ R A  + IK AYRR A  +HPD           E AE KF ++  AYE+L D+
Sbjct: 5   YEILDVPRSASADDIKKAYRRKALQWHPDKNPD-----NKEFAEKKFKEVAEAYEVLSDK 59

Query: 139 ERRRQYD 145
            +R  YD
Sbjct: 60  HKREIYD 66

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 75.8 bits (187), Expect = 4e-18
 Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 73  ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAY 132
                 YE L + R A +E +K AYRRLA  +HPD             A   F  I  AY
Sbjct: 4   GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDK-------NHAPGATEAFKAIGTAY 56

Query: 133 ELLIDEERRRQYD 145
            +L + E+R+QYD
Sbjct: 57  AVLSNPEKRKQYD 69

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 75.8 bits (187), Expect = 5e-18
 Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 7/67 (10%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y+ L + + A E QIK A+ +LA  YHPD         K   AEAKF +I  AYE L D 
Sbjct: 10  YDILGVPKSASERQIKKAFHKLAMKYHPDK-------NKSPDAEAKFREIAEAYETLSDA 62

Query: 139 ERRRQYD 145
            RR++YD
Sbjct: 63  NRRKEYD 69

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 75.3 bits (186), Expect = 5e-18
 Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 7/67 (10%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y+TL L R A +E+IK AYRR A  YHPD         K   AE KF +I  AY++L D 
Sbjct: 6   YQTLGLARGASDEEIKRAYRRQALRYHPDK-------NKEPGAEEKFKEIAEAYDVLSDP 58

Query: 139 ERRRQYD 145
            +R  +D
Sbjct: 59  RKREIFD 65

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 75.5 bits (186), Expect = 7e-18
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y+ L +   A + QIK AY R    YHPD   G         A  +F +I  AY +L   
Sbjct: 20  YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSG------SAEAAERFTRISQAYVVLGSA 73

Query: 139 ERRRQYD 145
             RR+YD
Sbjct: 74  TLRRKYD 80

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 75.9 bits (187), Expect = 7e-18
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 73  ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAY 132
            D +  Y  L  +  +  EQI   ++  A   HPD +           A   F K+Q A 
Sbjct: 17  EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPE------NPKAVETFQKLQKAK 70

Query: 133 ELLIDEERRRQYD 145
           E+L +EE R +YD
Sbjct: 71  EILTNEESRARYD 83

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 74.2 bits (183), Expect = 2e-17
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 6/67 (8%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y+ L + R+A +++IK AY +LAK YHPD             A+ KF ++  AYE+L DE
Sbjct: 10  YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKD------DPKAKEKFSQLAEAYEVLSDE 63

Query: 139 ERRRQYD 145
            +R+QYD
Sbjct: 64  VKRKQYD 70

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 73.9 bits (182), Expect = 2e-17
 Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L ++  A  E IK AYR+LA  +HPD         K E AE KF  +  AYE+L D 
Sbjct: 12  YEVLGVQASASPEDIKKAYRKLALRWHPDKNPD----NKEE-AEKKFKLVSEAYEVLSDS 66

Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 67  KKRSLYD 73

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 74.4 bits (183), Expect = 3e-17
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 4/72 (5%)

Query: 75  EKSPYETLELERDA-DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYE 133
            ++ Y+ LE+ R+  D++++  AYR LA+ +HPD    +   E+   AE +F  I  AYE
Sbjct: 14  LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNK---EEKLLAEERFRVIATAYE 70

Query: 134 LLIDEERRRQYD 145
            L D+E +  YD
Sbjct: 71  TLKDDEAKTNYD 82

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 73.1 bits (180), Expect = 4e-17
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 5/67 (7%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           YE L++ R A  E IK AYR+LA  +HPD         K E AE +F ++  AYE+L D 
Sbjct: 12  YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPE----NKEE-AERRFKQVAEAYEVLSDA 66

Query: 139 ERRRQYD 145
           ++R  YD
Sbjct: 67  KKRDIYD 73

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 72.4 bits (178), Expect = 2e-16
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
           Y  L L+++A  + IK +YR+LA  YHPD             A  KF +I  A+ +L D 
Sbjct: 20  YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPD------NPEAADKFKEINNAHAILTDA 73

Query: 139 ERRRQYD 145
            +R  YD
Sbjct: 74  TKRNIYD 80

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 70.0 bits (172), Expect = 6e-16
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 9/73 (12%)

Query: 73  ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAY 132
             E   Y+ L +   A+E+++K  YR+ A  YHPD         K      KF +I  A+
Sbjct: 5   VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPD---------KPTGDTEKFKEISEAF 55

Query: 133 ELLIDEERRRQYD 145
           E+L D ++R  YD
Sbjct: 56  EILNDPQKREIYD 68

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 68.8 bits (169), Expect = 1e-15
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 9/73 (12%)

Query: 73  ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAY 132
             E   Y+ L ++ DA + ++K AYR++A  +HPD         K      +F +I  AY
Sbjct: 5   VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPD---------KNPDGAEQFKQISQAY 55

Query: 133 ELLIDEERRRQYD 145
           E+L DE++R+ YD
Sbjct: 56  EVLSDEKKRQIYD 68

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 67.8 bits (166), Expect = 6e-15
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 7/71 (9%)

Query: 75  EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL 134
            K  ++ L ++  A  +++  AYR+LA   HPD             +E  F  +  A   
Sbjct: 26  SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDK-------CVAPGSEDAFKAVVNARTA 78

Query: 135 LIDEERRRQYD 145
           L+   +     
Sbjct: 79  LLKNIKSGPSS 89

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 61  NQRRTVVSAANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGET 120
                       + ++  Y+ L ++R+A +++I  AYR+LA  +HPD +      +K   
Sbjct: 367 EGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKK--- 423

Query: 121 AEAKFIKIQAAYELLIDEERRRQYDM 146
           AE KFI I AA E+L D E R+++D 
Sbjct: 424 AEKKFIDIAAAKEVLSDPEMRKKFDD 449

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 68.4 bits (167), Expect = 2e-14
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 73  ADEKSPYETLELERDA--DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQA 130
            +     + L LER A  +   ++ AY +  K +HPD         KG   E K  K+  
Sbjct: 8   EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD---------KG-GDEEKMKKMNT 57

Query: 131 AYELLIDEERRRQYD 145
            Y+ + D  +     
Sbjct: 58  LYKKMEDGVKYAHQP 72

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 65.6 bits (160), Expect = 7e-14
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 12/74 (16%)

Query: 74  DEKSPYETLELERDA--DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAA 131
           +     + L LER A  +   ++ AY +  K +HPD         KG   E K  K+   
Sbjct: 6   ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD---------KG-GDEEKMKKMNTL 55

Query: 132 YELLIDEERRRQYD 145
           Y+ + D  +     
Sbjct: 56  YKKMEDGVKYAHQP 69

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 70.2 bits (171), Expect = 7e-14
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 73  ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAY 132
             +++ Y  L + + A   +I+ A+++LA   HPD             A   F+KI  AY
Sbjct: 18  RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN------PNAHGDFLKINRAY 71

Query: 133 ELLIDEERRRQYDMDNRVNPMKASQAWMEW 162
           E+L DE+ R++YD               E 
Sbjct: 72  EVLKDEDLRKKYDKYGEKGLEDNQGGQYES 101

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 62.0 bits (151), Expect = 7e-13
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 8/67 (11%)

Query: 79  YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
              +E      E + K   RRL   +HPD        E  + A   F  +Q     L   
Sbjct: 19  TSVVEQAWKLPESERKKIIRRLYLKWHPDK-----NPENHDIANEVFKHLQNEINRL--- 70

Query: 139 ERRRQYD 145
           E++   D
Sbjct: 71  EKQAFLD 77

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 55.7 bits (134), Expect = 7e-10
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 78  PYETLELER--DADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
            +    L      D + + + ++ L + YHPD +      E+   A  +   I  A++ L
Sbjct: 3   YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQ-LAAVQQSATINQAWQTL 61

Query: 136 IDEERRRQYDMD 147
                R +Y + 
Sbjct: 62  RHPLMRAEYLLS 73

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 53.2 bits (127), Expect = 1e-08
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 3/78 (3%)

Query: 74  DEKSPYETLELER--DADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAA 131
             +  +  ++  R    D  +++  Y++L +  HPD +  R   EK + +E     +  A
Sbjct: 41  PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEK-DFSEKHSTLVNDA 99

Query: 132 YELLIDEERRRQYDMDNR 149
           Y+ L+    R  Y +   
Sbjct: 100 YKTLLAPLSRGLYLLKLH 117

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 51.4 bits (122), Expect = 3e-08
 Identities = 13/71 (18%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 74  DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYE 133
             ++ ++ + +      EQ+K  YR+     HPD   G+      + A+  F+++  A+ 
Sbjct: 115 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQ---PYEQYAKMIFMELNDAWS 171

Query: 134 LLIDEERRRQY 144
              ++ ++  Y
Sbjct: 172 EFENQGQKPLY 182

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 47.6 bits (113), Expect = 8e-08
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 12/76 (15%)

Query: 73  ADEKSPYETLELERDA--DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQA 130
           AD++   E L+L R    D  +++ AY++ +   HPD         KG +      ++ +
Sbjct: 8   ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPD---------KGGSHA-LMQELNS 57

Query: 131 AYELLIDEERRRQYDM 146
            +     E    + ++
Sbjct: 58  LWGTFKTEVYNLRMNL 73

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 9/60 (15%)

Query: 87  DADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDM 146
             D+ +++  YR+L   +HPD+          +    +   +  AY  L D  RR QY +
Sbjct: 29  TIDQSRLRKEYRQLQAQHHPDMA---------QQGSEQSSTLNQAYHTLKDPLRRSQYML 79

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 75  EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRG-TLEKGETAEAKFIKIQAAYE 133
             S ++ + L    +   ++ +Y+R     HPD    +G +  +   AE  F  +Q A++
Sbjct: 39  SGSGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWD 98

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 11/65 (16%)

Query: 79  YETLELERDA-DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLID 137
            + L L  +   ++++K  +R++    HPD         KG +      KI  A + L  
Sbjct: 17  LQILNLTENTLTKKKLKEVHRKIMLANHPD---------KGGSPF-LATKINEAKDFLEK 66

Query: 138 EERRR 142
               +
Sbjct: 67  RGISK 71

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 72  WADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAA 131
           WA E + ++ + +      EQ+K  YR+     HP    G+      + A+  F+++  A
Sbjct: 30  WAGE-TKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQ---PYEQYAKMIFMELNDA 85

Query: 132 YELLIDE 138
           +    ++
Sbjct: 86  WSEFENQ 92

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 39/331 (11%), Positives = 85/331 (25%), Gaps = 106/331 (32%)

Query: 16  TSLIS--CRDQARSFIKVSFRSPNYRPRLSSWFGFRELNRTESWFRVNQRRTVVSAANWA 73
           T +    C       ++       +      W   +  N  E+   + Q+       NW 
Sbjct: 164 TWVALDVCLSYK---VQCKMDFKIF------WLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 74  DEKSPYETLELERDADEEQIK-----------------VAYRRLAK-F------------ 103
                   ++L   + + +++                 V   +    F            
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274

Query: 104 ------------YHPDVYDGRGTLEKGETAE--AKFIKIQAAYEL-------------LI 136
                        H  +     TL   E      K++  +   +L             +I
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-DLPREVLTTNPRRLSII 333

Query: 137 DEERRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAW--AEQQQL------- 187
            E  R   D             W  W            + ++     AE +++       
Sbjct: 334 AESIR---DGLAT---------WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 188 --ELNLRARRLSR--SKIDPEEERKILAREMKAS---KEYFTNTMKRHTLVLKKRDLMRR 240
               ++    LS     +   +   ++ +  K S   K+   +T+   ++ L+    ++ 
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE----LKV 437

Query: 241 KAEEEK---RKAIGRLLAAEGLELDTDDEAK 268
           K E E    R  +      +    D+DD   
Sbjct: 438 KLENEYALHRSIVDHYNIPKT--FDSDDLIP 466

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 5e-04
 Identities = 45/318 (14%), Positives = 88/318 (27%), Gaps = 99/318 (31%)

Query: 23  DQARSFIKVSFRSPNYRPRL-------SSW----FGF--------RELNRTESWFRVNQR 63
              ++ ++   +S  Y   L       ++     F          R    T+  F     
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD--FLSAAT 285

Query: 64  RTVVSAANWADEKSPYETLEL-----ERDADEEQIKVAYRRLAKFYHP--------DVYD 110
            T +S  + +   +P E   L     +    +        R     +P         + D
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL------PREVLTTNPRRLSIIAESIRD 339

Query: 111 GRGTLE--KGETAEAKFIKIQAAYELLIDEERRRQYDM-----DNRVN-PMKA-SQAW-- 159
           G  T +  K    +     I+++  +L   E R+ +D       +  + P    S  W  
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-AHIPTILLSLIWFD 398

Query: 160 ---------MEWLIKKRKAFDQRGDMAIAAWAEQQQLELNLRARRLSRSKIDPEEE--RK 208
                    +  L K            +    ++  + +      L + K++ E    R 
Sbjct: 399 VIKSDVMVVVNKLHKYS---------LVEKQPKESTISIPSIYLEL-KVKLENEYALHRS 448

Query: 209 ILAREMKASK------------EYFTNTMKRHTLVLKKRDLMRRKAE-----------EE 245
           I+                    +YF + +  H   LK  +   R              E+
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH---LKNIEHPERMTLFRMVFLDFRFLEQ 505

Query: 246 KRKAIGRLLAAEGLELDT 263
           K +       A G  L+T
Sbjct: 506 KIRHDSTAWNASGSILNT 523

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	268
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.85
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.84
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.84
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.83
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.83
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.83
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.83
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.83
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.82
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.82
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.81
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.81
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.81
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.81
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.8
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.79
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.77
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.76
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.74
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.74
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.73
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.73
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.73
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.71
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.69
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.68
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.67
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.65
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.64
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.63
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.61
2guz_A	71	Mitochondrial import inner membrane translocase su	99.6
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.59
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.03
2guz_B	65	Mitochondrial import inner membrane translocase su	98.83
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	84.27

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=2.1e-21  Score=143.17  Aligned_cols=73  Identities=38%  Similarity=0.595  Sum_probs=67.0

Q ss_pred             CCCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCCC
Q 024429           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVN  151 (268)
Q Consensus        73 ~~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~  151 (268)
                      ....+||+||||+++++.++||+||++|+++||||++++      .+.+.+.|+.|++||+||+||.+|..||.++...
T Consensus         4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~------~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   76 (79)
T 2dn9_A            4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKD------DPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP   76 (79)
T ss_dssp             SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSS------CTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------CHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence            457899999999999999999999999999999999875      3468999999999999999999999999988653

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.84  E-value=8.5e-22  Score=152.68  Aligned_cols=72  Identities=42%  Similarity=0.678  Sum_probs=66.0

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCCCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNP  152 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~  152 (268)
                      ..+||+||||+++++.++||+|||+|+++||||+++.      .+.+.+.|+.|++||+||+||.+|..||.++....
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~------~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   73 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG------DKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAF   73 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTT------TCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC------cHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhh
Confidence            4789999999999999999999999999999999875      34688999999999999999999999999987643

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=2.5e-21  Score=143.80  Aligned_cols=73  Identities=38%  Similarity=0.559  Sum_probs=66.8

Q ss_pred             CCCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        73 ~~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ....+||+||||+++++.++||+||++|+++||||+++..     .+.+.+.|+.|++||+||+||.+|..||.++..
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   78 (82)
T 2ej7_A            6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN-----KEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSG   78 (82)
T ss_dssp             SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTT-----HHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCC
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence            4568999999999999999999999999999999998753     356889999999999999999999999998865

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=5.3e-21  Score=140.77  Aligned_cols=72  Identities=38%  Similarity=0.548  Sum_probs=66.2

Q ss_pred             CCCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCCC
Q 024429           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVN  151 (268)
Q Consensus        73 ~~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~  151 (268)
                      ....+||+||||+++++.++||+||++|+++||||+++.       +.+.+.|+.|++||+||+||.+|..||.++...
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-------~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A            4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-------PGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS-------HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            457899999999999999999999999999999999864       457899999999999999999999999988653

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.83  E-value=5.7e-21  Score=140.26  Aligned_cols=69  Identities=43%  Similarity=0.613  Sum_probs=64.0

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ..|||+||||+++++.++||+||++|+++||||+++.       +.+.+.|+.|++||+||+||.+|..||.++..
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~-------~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   70 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-------PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEE   70 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-------TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGG
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------ccHHHHHHHHHHHHHHHCCHHHHHHHHHHccc
Confidence            3689999999999999999999999999999999874       34789999999999999999999999998865

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.83  E-value=2.8e-21  Score=147.06  Aligned_cols=78  Identities=28%  Similarity=0.458  Sum_probs=69.1

Q ss_pred             CCCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        73 ~~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ....+||+||||+++++.++||+||++|+++||||+++....+...+.+.+.|+.|++||+||+||.+|+.||..+..
T Consensus        13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   90 (94)
T 1wjz_A           13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG   90 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence            357899999999999999999999999999999999985433334567899999999999999999999999997654

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.83  E-value=8e-21  Score=138.15  Aligned_cols=68  Identities=35%  Similarity=0.634  Sum_probs=62.0

Q ss_pred             CCCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCC
Q 024429           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (268)
Q Consensus        73 ~~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (268)
                      ....+||+||||+++++.++||++|++|+++||||++++.         .+.|+.|++||+||+||.+|..||.+|.
T Consensus         5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---------AEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---------HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---------HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            3568999999999999999999999999999999998642         5899999999999999999999999874

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=5.3e-21  Score=150.40  Aligned_cols=84  Identities=30%  Similarity=0.345  Sum_probs=72.3

Q ss_pred             CCCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCCCC
Q 024429           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNP  152 (268)
Q Consensus        73 ~~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~  152 (268)
                      ....|||+||||+++++.++||+|||+|+++||||++++      .+.+.+.|+.|++||+||+||.+|..||.++....
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~------~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~   90 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPE------NPKAVETFQKLQKAKEILTNEESRARYDHWRRSQM   90 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTT------CSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------cHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence            356899999999999999999999999999999999975      34689999999999999999999999999876544


Q ss_pred             CcchHHHHHH
Q 024429          153 MKASQAWMEW  162 (268)
Q Consensus       153 ~~~~~~~~~~  162 (268)
                      ..+...|...
T Consensus        91 ~~~~~~w~~~  100 (112)
T 2ctq_A           91 SMPFQQWEAL  100 (112)
T ss_dssp             SSCHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence            4444555443

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.82  E-value=1.6e-20  Score=141.48  Aligned_cols=71  Identities=41%  Similarity=0.658  Sum_probs=65.6

Q ss_pred             CCCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        73 ~~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ....|||+||||+++++.++||+||++|+++||||+++.       +.+.+.|+.|++||+||+||.+|..||.++..
T Consensus        14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-------~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   84 (88)
T 2cug_A           14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-------PGAEDRFIQISKAYEILSNEEKRTNYDHYGSG   84 (88)
T ss_dssp             SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-------TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred             cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-------hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence            346899999999999999999999999999999999874       35789999999999999999999999998865

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=2.3e-20  Score=143.67  Aligned_cols=72  Identities=33%  Similarity=0.499  Sum_probs=65.7

Q ss_pred             CCCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        73 ~~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ....+||+||||+++++.++||+||++|+++||||+++.      .+.+.+.|+.|++||+||+||.+|..||.....
T Consensus        14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~------~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   85 (99)
T 2yua_A           14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSG------SAEAAERFTRISQAYVVLGSATLRRKYDRGLLS   85 (99)
T ss_dssp             SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSS------CSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred             CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------CHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccc
Confidence            357899999999999999999999999999999999975      356899999999999999999999999986543

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=1.4e-20  Score=142.83  Aligned_cols=73  Identities=38%  Similarity=0.536  Sum_probs=66.6

Q ss_pred             CCCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        73 ~~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ....+||+||||+++++.++||+||++|+++||||+++..     .+.+.+.|+.|++||+||+||.+|..||..+..
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   78 (92)
T 2dmx_A            6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDN-----KEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCD   78 (92)
T ss_dssp             CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSC-----SHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSC
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCcc-----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence            3568999999999999999999999999999999998753     357889999999999999999999999998754

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.81  E-value=6.3e-21  Score=149.14  Aligned_cols=76  Identities=34%  Similarity=0.521  Sum_probs=67.8

Q ss_pred             CCCCCCccccccCCCCC-CHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           72 WADEKSPYETLELERDA-DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        72 ~~~~~d~Y~iLgl~~~a-s~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      +....+||+||||++++ +.++||+|||+|+++||||++++   +...+.+.+.|+.|++||+||+||.+|+.||..+..
T Consensus        11 ~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~---~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~   87 (109)
T 2qsa_A           11 YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKN---KEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH   87 (109)
T ss_dssp             TTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCS---HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred             HcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence            34579999999999999 99999999999999999999874   222467899999999999999999999999998754

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=2e-20  Score=140.88  Aligned_cols=70  Identities=43%  Similarity=0.629  Sum_probs=64.8

Q ss_pred             CCCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCC
Q 024429           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (268)
Q Consensus        73 ~~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (268)
                      ....+||+||||+++++.++||+||++|+++||||+++.       +.+.+.|+.|++||+||+||.+|..||..+.
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-------~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   73 (88)
T 2ctr_A            4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-------PDAEAKFREIAEAYETLSDANRRKEYDTLGH   73 (88)
T ss_dssp             CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS-------HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCH
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-------hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence            457899999999999999999999999999999999873       4688999999999999999999999999764

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.81  E-value=4e-20  Score=144.74  Aligned_cols=72  Identities=35%  Similarity=0.549  Sum_probs=66.1

Q ss_pred             CCCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        73 ~~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ....+||+||||+++++.++||+||++|+++||||+++.      .+.+.+.|+.|++||+||+||.+|+.||.++..
T Consensus        14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~------~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~   85 (109)
T 2ctw_A           14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPD------NPEAADKFKEINNAHAILTDATKRNIYDKYGSL   85 (109)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTT------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHH
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC------cHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccc
Confidence            356899999999999999999999999999999999975      356899999999999999999999999998743

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.80  E-value=1.8e-20  Score=144.40  Aligned_cols=70  Identities=43%  Similarity=0.611  Sum_probs=64.5

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        76 ~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      .|||+||||+++++.++||+||++|+++||||+++..     .+.+.+.|+.|++||+||+||.+|..||.++..
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-----~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~   71 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDN-----KEFAEKKFKEVAEAYEVLSDKHKREIYDRYGRE   71 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSC-----CHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCcc-----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence            5899999999999999999999999999999998753     456889999999999999999999999997754

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.79  E-value=6.8e-20  Score=139.17  Aligned_cols=67  Identities=36%  Similarity=0.589  Sum_probs=62.1

Q ss_pred             CCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCC
Q 024429           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (268)
Q Consensus        74 ~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (268)
                      ...+||+||||+++++.++||+||++|+++||||+++..         .+.|+.|++||+||+||.+|..||.++.
T Consensus         6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   72 (92)
T 2o37_A            6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---------TEKFKEISEAFEILNDPQKREIYDQYGL   72 (92)
T ss_dssp             SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---------HHHHHHHHHHHHHHTSHHHHHHHHHHCH
T ss_pred             cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---------HHHHHHHHHHHHHHCCHHHHHHHHHHCH
Confidence            568999999999999999999999999999999998752         5699999999999999999999999763

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.77  E-value=3.2e-19  Score=147.68  Aligned_cols=76  Identities=30%  Similarity=0.493  Sum_probs=67.8

Q ss_pred             CCCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccC
Q 024429           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDN  148 (268)
Q Consensus        73 ~~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~  148 (268)
                      ....|||+||||+++++.++||+|||+|++++|||+++..+...+.+.+.+.|+.|++||+||+||.+|+.||..+
T Consensus         7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~   82 (155)
T 2l6l_A            7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR   82 (155)
T ss_dssp             CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred             CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            4568999999999999999999999999999999999875443445678899999999999999999999999754

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.76  E-value=2.6e-19  Score=153.52  Aligned_cols=69  Identities=33%  Similarity=0.562  Sum_probs=64.4

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        76 ~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      .|||+||||+++|+.++||+|||+|+++||||++++      .+.+.+.|+.|++||+||+||.+|+.||.+|..
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~------~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~   70 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPN------NPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEK   70 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTT------CTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTT
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------ChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccc
Confidence            589999999999999999999999999999999975      356899999999999999999999999998854

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=1.1e-18  Score=131.91  Aligned_cols=63  Identities=24%  Similarity=0.426  Sum_probs=57.9

Q ss_pred             CCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHh
Q 024429           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQ  143 (268)
Q Consensus        74 ~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~  143 (268)
                      ...|||+||||+++++.++||+|||+|+++||||+++.       +.+.+.|+.|++||++|+||.+|+.
T Consensus        25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-------~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-------PGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC-------TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-------ccHHHHHHHHHHHHHHHCCcccccC
Confidence            36899999999999999999999999999999999975       3478999999999999999998864

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.74  E-value=1.6e-19  Score=166.56  Aligned_cols=69  Identities=45%  Similarity=0.659  Sum_probs=0.0

Q ss_pred             CCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCC
Q 024429           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (268)
Q Consensus        74 ~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (268)
                      ..+|||+||||+++|+.++||+|||+|+++||||+++.       +.+.++|++|++||+||+||.+|+.||.++.
T Consensus        26 ~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~-------~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~   94 (329)
T 3lz8_A           26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-------NDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ   94 (329)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             cccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC-------hHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence            45899999999999999999999999999999999874       3578999999999999999999999999753

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.73  E-value=2.4e-19  Score=141.43  Aligned_cols=79  Identities=24%  Similarity=0.347  Sum_probs=66.1

Q ss_pred             CCCccccccCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC--
Q 024429           75 EKSPYETLELERDADE--EQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV--  150 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~--~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~--  150 (268)
                      ..+||+||||+++++.  .+||+|||+|+++||||+++.          .++|+.|++||+||+||.+|+.||.++..  
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----------~e~f~~I~~AYevL~d~~~R~~~~~~~~~w~   76 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----------EEKMKKMNTLYKKMEDGVKYAHQPDFGGFWD   76 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----------TTTTHHHHHHHHHHHHHHHSCCSSCCSCCCC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----------HHHHHHHHHHHHHHCCHHHHHHhhhcccccc
Confidence            4689999999999998  999999999999999999764          47899999999999999999999976642  


Q ss_pred             ---CCCcchHHHHHHH
Q 024429          151 ---NPMKASQAWMEWL  163 (268)
Q Consensus       151 ---~~~~~~~~~~~~~  163 (268)
                         .+..+...|.+|+
T Consensus        77 ~~~~~~~g~p~w~~w~   92 (114)
T 1gh6_A           77 ATEIPTYGTDEWEQWW   92 (114)
T ss_dssp             CCCCCCCSSSCHHHHH
T ss_pred             cccCCCCCCchHHHHH
Confidence               2223445566654

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.73  E-value=1.7e-18  Score=149.98  Aligned_cols=73  Identities=19%  Similarity=0.420  Sum_probs=63.4

Q ss_pred             CCCCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhccc
Q 024429           74 DEKSPYETLELERD--ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMD  147 (268)
Q Consensus        74 ~~~d~Y~iLgl~~~--as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~  147 (268)
                      ...|||+||||+++  ++..+||++||+|+++||||++++.+ ..+...+.+.|+.|++||+||+||.+|+.||..
T Consensus        41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~-~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~  115 (207)
T 3bvo_A           41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRS-QTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLK  115 (207)
T ss_dssp             TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSC-HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCC-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            46899999999986  79999999999999999999998642 222445788999999999999999999999963

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.71  E-value=3.9e-17  Score=137.43  Aligned_cols=72  Identities=18%  Similarity=0.306  Sum_probs=63.6

Q ss_pred             CccccccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCC
Q 024429           77 SPYETLELERDA--DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (268)
Q Consensus        77 d~Y~iLgl~~~a--s~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (268)
                      |||+||||++++  +..+||++||+|+++||||++++.+ ..+...+.+.|..|++||+||+||.+|+.||....
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~-~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~   75 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGS-QAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH   75 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSC-HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCC-HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence            799999999999  9999999999999999999998642 22234577899999999999999999999998654

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.69  E-value=1.2e-17  Score=123.28  Aligned_cols=61  Identities=20%  Similarity=0.309  Sum_probs=56.2

Q ss_pred             CCCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhc
Q 024429           75 EKSPYETLELERD--ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYD  145 (268)
Q Consensus        75 ~~d~Y~iLgl~~~--as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD  145 (268)
                      ..++|+||||+++  ++.++||+|||+|+++||||++++          .+.|+.|++||+||+|+.+|..++
T Consensus        10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----------~~~f~~i~~AYe~L~~~~~r~~~~   72 (79)
T 1faf_A           10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----------HALMQELNSLWGTFKTEVYNLRMN   72 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----------HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----------HHHHHHHHHHHHHHhhHHHHHHHh
Confidence            4689999999999  999999999999999999999753          589999999999999999999854

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.68  E-value=3.5e-18  Score=128.80  Aligned_cols=65  Identities=22%  Similarity=0.161  Sum_probs=58.3

Q ss_pred             CCCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHH
Q 024429           73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRR  142 (268)
Q Consensus        73 ~~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~  142 (268)
                      ....++|+||||+++|+.++||+|||+|+++||||++++.     .+.+++.|+.|++||+||+|...|.
T Consensus        13 ~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~-----~~~a~~~F~~I~~AYevL~~~~~r~   77 (88)
T 1iur_A           13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN-----HDIANEVFKHLQNEINRLEKQAFLD   77 (88)
T ss_dssp             SCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSC-----HHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             ccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-----hHHHHHHHHHHHHHHHHHHhhcccc
Confidence            4568999999999999999999999999999999998753     3568999999999999999987773

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.67  E-value=3.8e-18  Score=143.55  Aligned_cols=65  Identities=25%  Similarity=0.245  Sum_probs=57.7

Q ss_pred             CCCccccccCCCCCC--HHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCC
Q 024429           75 EKSPYETLELERDAD--EEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as--~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (268)
                      ..+||+||||+++|+  .++||+|||++++++|||++++          .+.|+.|++||+||+||.+|+.||.+|.
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----------~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----------EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----------CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----------HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            479999999999998  6999999999999999999764          3689999999999999999999999884

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.65  E-value=2.3e-17  Score=128.41  Aligned_cols=65  Identities=17%  Similarity=0.245  Sum_probs=55.8

Q ss_pred             CCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-CccccchHHHHHHHHHHHHHHcCChh
Q 024429           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRG-TLEKGETAEAKFIKIQAAYELLIDEE  139 (268)
Q Consensus        74 ~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~-~~~~~~~a~~~f~~I~~AY~vLsdp~  139 (268)
                      ...+||+|||++. |+.++||+|||+++++|||||+++.+ +++....+++.|+.|++||+||+|+.
T Consensus        39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            3579999999996 99999999999999999999987543 23334468999999999999999985

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.64  E-value=4.4e-17  Score=137.93  Aligned_cols=67  Identities=19%  Similarity=0.381  Sum_probs=59.7

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhh
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQY  144 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~Y  144 (268)
                      ..+||+||||+++|+.++||+|||+++++||||++++...   ...+++.|+.|++||+||+||.+|+.|
T Consensus       116 ~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~---e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPY---EQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             TCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTT---HHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcch---HHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            3699999999999999999999999999999999975311   124889999999999999999999887

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.63  E-value=6.9e-16  Score=130.92  Aligned_cols=67  Identities=27%  Similarity=0.394  Sum_probs=60.0

Q ss_pred             CCCCCccccc------cCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhc
Q 024429           73 ADEKSPYETL------ELER-DADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYD  145 (268)
Q Consensus        73 ~~~~d~Y~iL------gl~~-~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD  145 (268)
                      ....|||+||      |+++ +++..+||++||+|+++||||++++         +.+.|+.|++||+||+||.+|+.||
T Consensus         8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---------a~~~f~~i~~AY~vL~dp~~R~~Yd   78 (181)
T 3uo3_A            8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---------GSEQSSTLNQAYHTLKDPLRRSQYM   78 (181)
T ss_dssp             CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---------CSSGGGSHHHHHHHHHSHHHHHHHH
T ss_pred             CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---------HHHHHHHHHHHHHHHcChHHHHHHH
Confidence            4568999999      4665 8999999999999999999999864         3578999999999999999999999


Q ss_pred             ccC
Q 024429          146 MDN  148 (268)
Q Consensus       146 ~~~  148 (268)
                      ...
T Consensus        79 ~~l   81 (181)
T 3uo3_A           79 LKL   81 (181)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            854

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.61  E-value=1.3e-16  Score=120.99  Aligned_cols=59  Identities=19%  Similarity=0.329  Sum_probs=51.9

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCC
Q 024429           76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLID  137 (268)
Q Consensus        76 ~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsd  137 (268)
                      .++|++|||++.|+.++||+|||+++++||||++++..  . ...+.+.|+.|++||+||.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~--~-~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQP--Y-EQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTST--T-HHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCch--h-HhHHHHHHHHHHHHHHHHHh
Confidence            68999999999999999999999999999999997631  1 13588999999999999964

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.60  E-value=1.8e-16  Score=114.66  Aligned_cols=57  Identities=21%  Similarity=0.233  Sum_probs=51.2

Q ss_pred             CCCccccccCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHH
Q 024429           75 EKSPYETLELER-DADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERR  141 (268)
Q Consensus        75 ~~d~Y~iLgl~~-~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R  141 (268)
                      ..++|+||||++ +++.++||+|||+|+++||||+++.          .+.|+.|++||++|+|+..|
T Consensus        13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~----------~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS----------PFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC----------HHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----------HHHHHHHHHHHHHHhhhhhc
Confidence            468999999999 7999999999999999999999632          46999999999999988655

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.59  E-value=8.2e-17  Score=162.39  Aligned_cols=74  Identities=31%  Similarity=0.520  Sum_probs=40.8

Q ss_pred             CCCCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCCC
Q 024429           72 WADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVN  151 (268)
Q Consensus        72 ~~~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~  151 (268)
                      .....|||+||||+++|+.++||+|||+|+++||||++++      .+.+.+.|+.|++||++|+||.+|+.||.+|..+
T Consensus        17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~------~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~   90 (780)
T 3apo_A           17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPN------NPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG   90 (780)
T ss_dssp             ------CHHHHTCCTTCCHHHHHHHHCC-----------------------------CTHHHHHHSHHHHHHHTTC----
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------ChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccc
Confidence            3457899999999999999999999999999999999875      3468899999999999999999999999988653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.03  E-value=1.2e-10  Score=106.74  Aligned_cols=69  Identities=41%  Similarity=0.667  Sum_probs=57.2

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcc
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDM  146 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~  146 (268)
                      ..++|.+||+.+.++.++|+++|+++++++|||+.+..   .+...+.+.|+.|++||++|+||++|..||.
T Consensus       381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~---~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNE---EEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSH---HHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            45899999999999999999999999999999998652   1135688999999999999999999999997

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.83  E-value=3e-09  Score=75.22  Aligned_cols=52  Identities=15%  Similarity=0.072  Sum_probs=46.0

Q ss_pred             CCccccccCCCC---CCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCC
Q 024429           76 KSPYETLELERD---ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLID  137 (268)
Q Consensus        76 ~d~Y~iLgl~~~---as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsd  137 (268)
                      ...|.||||+++   ++.++|+++||+|...+|||+.+.          ......|++|+++|..
T Consensus         4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS----------~yl~~ki~~Ake~l~~   58 (65)
T 2guz_B            4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS----------FYLQSKVYRAAERLKW   58 (65)
T ss_dssp             HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC----------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC----------HHHHHHHHHHHHHHHH
Confidence            356899999999   999999999999999999999643          5788899999999864

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=84.27  E-value=0.51  Score=46.31  Aligned_cols=47  Identities=13%  Similarity=0.222  Sum_probs=36.8

Q ss_pred             CCCCccccccCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHH
Q 024429           74 DEKSPYETLELERDADE--EQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL  134 (268)
Q Consensus        74 ~~~d~Y~iLgl~~~as~--~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~v  134 (268)
                      ...+||.|||++.+...  .+|+++||++++..+++              .+++..|..|+.|
T Consensus       627 ~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          627 NKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------------RHRYTLVDMANKV  675 (681)
T ss_dssp             CCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------------HHHHHHHHHHHHH
T ss_pred             cCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------------HHHHHHHHHhccc
Confidence            35569999999776655  77999999999965443              3688888888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	268
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	8e-16
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	1e-11
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	7e-11
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	1e-10
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	2e-09
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	3e-09
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	5e-09
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	1e-06

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.9 bits (168), Expect = 8e-16
 Identities = 22/72 (30%), Positives = 37/72 (51%)

Query: 75  EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL 134
           +K  Y  L  +  A+   +K  Y++L   YHPD           E    KFI+I  A+++
Sbjct: 15  KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKI 74

Query: 135 LIDEERRRQYDM 146
           L +EE +++YD+
Sbjct: 75  LGNEETKKKYDL 86

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.6 bits (139), Expect = 1e-11
 Identities = 13/71 (18%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 74  DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYE 133
             ++ ++ + +      EQ+K  YR+     HPD   G+      + A+  F+++  A+ 
Sbjct: 31  AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQ---PYEQYAKMIFMELNDAWS 87

Query: 134 LLIDEERRRQY 144
              ++ ++  Y
Sbjct: 88  EFENQGQKPLY 98

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 55.0 bits (132), Expect = 7e-11
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 79  YETLELER--DADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLI 136
           +    L      D + + + ++ L + YHPD +      E+   A  +   I  A++ L 
Sbjct: 4   FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQ-LAAVQQSATINQAWQTLR 62

Query: 137 DEERRRQYDMD 147
               R +Y + 
Sbjct: 63  HPLMRAEYLLS 73

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 54.2 bits (130), Expect = 1e-10
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 6/71 (8%)

Query: 76  KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
           +  YE L + + A+E +I+ AY+RLA  YHPD   G       + AEAKF +I+ AYE+L
Sbjct: 3   QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG------DKEAEAKFKEIKEAYEVL 56

Query: 136 IDEERRRQYDM 146
            D ++R  YD 
Sbjct: 57  TDSQKRAAYDQ 67

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 2e-09
 Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 7/71 (9%)

Query: 76  KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
           K  Y+TL L R A +E+IK AYRR A  YHPD             AE KF +I  AY++L
Sbjct: 3   KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-------EPGAEEKFKEIAEAYDVL 55

Query: 136 IDEERRRQYDM 146
            D  +R  +D 
Sbjct: 56  SDPRKREIFDR 66

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 50.8 bits (121), Expect = 3e-09
 Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 12/78 (15%)

Query: 71  NWADEKSPYETLELERDA--DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKI 128
           + AD++   E L+L R    D  +++ AY++ +   HPD             + A   ++
Sbjct: 6   SRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG----------SHALMQEL 55

Query: 129 QAAYELLIDEERRRQYDM 146
            + +     E    + ++
Sbjct: 56  NSLWGTFKTEVYNLRMNL 73

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 5e-09
 Identities = 16/77 (20%), Positives = 22/77 (28%), Gaps = 5/77 (6%)

Query: 76  KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
           K     +E      E + K   RRL   +HPD        E  + A   F  +Q     L
Sbjct: 16  KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNP-----ENHDIANEVFKHLQNEINRL 70

Query: 136 IDEERRRQYDMDNRVNP 152
             +    Q         
Sbjct: 71  EKQAFLDQNADRASRRT 87

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 44.0 bits (103), Expect = 1e-06
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 12/74 (16%)

Query: 74  DEKSPYETLELERDA--DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAA 131
           +     + L LER A  +   ++ AY +  K +HPD                K  K+   
Sbjct: 6   ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE----------KMKKMNTL 55

Query: 132 YELLIDEERRRQYD 145
           Y+ + D  +     
Sbjct: 56  YKKMEDGVKYAHQP 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	268
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.88
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.84
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.81
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.74
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.72
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.66
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.65

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=2e-23  Score=151.33  Aligned_cols=70  Identities=43%  Similarity=0.717  Sum_probs=65.2

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      .+|||+||||+++||.++||+||++++++||||++++      .+.+.+.|..|++||+||+||.+|..||.+|..
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~------~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~   71 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG------DKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA   71 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTT------TCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTS
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCC------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCcc
Confidence            5799999999999999999999999999999999876      356788999999999999999999999998865

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=3.6e-22  Score=150.69  Aligned_cols=76  Identities=29%  Similarity=0.482  Sum_probs=68.4

Q ss_pred             CCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCC
Q 024429           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (268)
Q Consensus        74 ~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (268)
                      ..+|||+||||+++|+.++||+||++|+++||||+++........+.+.+.|+.|++||+||+||.+|+.||....
T Consensus        14 ~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~   89 (94)
T d1wjza_          14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             hccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccC
Confidence            4589999999999999999999999999999999998765444457789999999999999999999999998654

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=9.6e-22  Score=143.02  Aligned_cols=69  Identities=43%  Similarity=0.613  Sum_probs=64.1

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        75 ~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      .+|||+||||+++||.++|++||+++++++|||++..       +.+.+.|..|++||+||+||.+|+.||.+|..
T Consensus         2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~-------~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~   70 (77)
T d1hdja_           2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-------PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEE   70 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-------TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGG
T ss_pred             CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccc-------hhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhh
Confidence            3699999999999999999999999999999999874       35788999999999999999999999998865

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.81  E-value=1.5e-21  Score=152.24  Aligned_cols=66  Identities=24%  Similarity=0.279  Sum_probs=60.2

Q ss_pred             CCCccccccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCCC
Q 024429           75 EKSPYETLELERDA--DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV  150 (268)
Q Consensus        75 ~~d~Y~iLgl~~~a--s~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~  150 (268)
                      ..+||+||||+++|  +.++||+|||+||++||||++++          .++|+.|++||+||+||.+|+.||..+..
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~----------~e~F~~I~~AY~vLsd~~kR~~YD~~~~~   74 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----------EEKMKKMNTLYKKMEDGVKYAHQPDFGGF   74 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----------TTTTHHHHHHHHHHHHHHHSCCSSCCSCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhh----------HHHHHHHHHHHHHhCCHHHHHHHhccCCC
Confidence            47899999999999  78899999999999999999864          35799999999999999999999987654

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=4.7e-19  Score=128.20  Aligned_cols=70  Identities=19%  Similarity=0.326  Sum_probs=61.2

Q ss_pred             CccccccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhccc
Q 024429           77 SPYETLELERDA--DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMD  147 (268)
Q Consensus        77 d~Y~iLgl~~~a--s~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~  147 (268)
                      |||+||||++++  +.++||+||++++++||||+..+.+ +.+...+...|..|++||+||+||.+|+.|+..
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~-~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~   73 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGS-QAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS   73 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSC-HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccch-HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            799999999854  5899999999999999999987643 333566889999999999999999999999864

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.72  E-value=1e-18  Score=127.20  Aligned_cols=66  Identities=20%  Similarity=0.317  Sum_probs=60.0

Q ss_pred             CCCCccccccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCC
Q 024429           74 DEKSPYETLELERDA--DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (268)
Q Consensus        74 ~~~d~Y~iLgl~~~a--s~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (268)
                      ...+||+||||++++  +.++||+||++++++||||++++          .+.|+.|++||++|+|+.+|..||..+.
T Consensus         9 ~~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~----------~e~~~~in~Ay~~L~d~~~r~~~~~~~~   76 (79)
T d1fafa_           9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----------HALMQELNSLWGTFKTEVYNLRMNLGGT   76 (79)
T ss_dssp             HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----------HHHHHHHHHHHHHHHHHHHHHTTCCSSC
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC----------HHHHHHHHHHHHHHCCHHHHHHHccCCC
Confidence            357899999999987  99999999999999999999753          4789999999999999999999998664

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2e-17  Score=122.76  Aligned_cols=68  Identities=22%  Similarity=0.197  Sum_probs=60.0

Q ss_pred             CCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhhcccCC
Q 024429           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR  149 (268)
Q Consensus        74 ~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~  149 (268)
                      ..+++|+||||+.+||.++||+|||+|+++||||+++++     .+.+.+.|+.|++||++|+   ++..||....
T Consensus        14 ~~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~-----~~~a~~~f~~i~~Ay~~L~---~~~~~d~~~~   81 (88)
T d1iura_          14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN-----HDIANEVFKHLQNEINRLE---KQAFLDQNAD   81 (88)
T ss_dssp             CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSC-----HHHHHHHHHHHHHHHHHHH---HHTTCSSSSS
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccch-----hhHHHHHHHHHHHHHHHHH---HHHHhhccch
Confidence            357999999999999999999999999999999998764     4678999999999999996   5677887654

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=1e-17  Score=126.80  Aligned_cols=68  Identities=19%  Similarity=0.373  Sum_probs=60.6

Q ss_pred             CCCCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccccchHHHHHHHHHHHHHHcCChhHHHhh
Q 024429           74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQY  144 (268)
Q Consensus        74 ~~~d~Y~iLgl~~~as~~eIKkaYrkla~~~HPDk~~~~~~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~Y  144 (268)
                      ...++|++|||...+|.++||+||+++++.||||++++.+   ....+...|+.|++||++|+||.+|+.|
T Consensus        31 ~~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~---~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          31 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQP---YEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TTCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTST---THHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             CcccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChH---HHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            3567899999999999999999999999999999987643   1345889999999999999999999987