Citrus Sinensis ID: 024479

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
Protein Sequence
MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDGFSSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTAYASAAGSGSNISSEGALSATTPEGFDSLFSFNSSNSDASQSETTANLTSETSLFQDESKPKLDSRHHHHHQVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGFF
Secondary Structure (PSIPRED)
cEEEHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MIIHLQALLGNRWAAIASylpqrtdndikNYWNTHLKKKLKKlqtgsdggqnnqdgfsstsqqasnkgQWERRLQTDIHMAKQALCEAlsldktsptspanlllspdqsnlkpmssttynntpyasnaENISRLLQNwmknppkisettqdsftntayasaagsgsnissegalsattpegfdslfsfnssnsdasqsettanltsetslfqdeskpkldsrhhhhhqvplTLLEKWLFDDVaaahqghddddlinmsledstvgff
Flexible Loop (DISEMBL)
MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGgqnnqdgfsstsqqasnKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLlspdqsnlkpmsSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTAYASAAGSGSNISSEGALSATTPEGFDSLFSFNSSNSDASQSETTANLTSETSLFQDESKPKLDSRHHHHHQVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGFF
Low Complexity Region (SEG)
MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHlkkklkklQTGSDGGQNNQDGFSSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTayasaagsgsnissegaLSATTPEGfdslfsfnssnsdasqsETTANLTSETSLFQDESKPKLDSRHHHHHQVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGFF
Disordered region (IsUnstruct)
*IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLK*************************************************************************************************************************************************************************************************LTLLEKWLFDDVAAAH*********************
Disordered Region (DISOPRED)
MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLK*************************************************************************************************************************************************************************************************LTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTV*FF
Disordered Region (DISEMBL)
MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLK*****************************ERRLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTAYAS**************SATTPEGFDSLFSFNS**************************************VPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGFF
Disordered Region (DISPRO)
MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKL**************************************KQALCEA*S*******************************************LLQNWMK**************************************************************************************HQVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDST*GFF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDGFSSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTAYASAAGSGSNISSEGALSATTPEGFDSLFSFNSSNSDASQSETTANLTSETSLFQDESKPKLDSRHHHHHQVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGFF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	267	2.2.26 [Sep-21-2011]
P81392	316	Myb-related protein 306 O	N/A	no	0.850	0.718	0.537	1e-56
Q8GWP0	360	Transcription factor MYB3	no	no	0.168	0.125	0.659	9e-12
O49608	274	Transcription factor MYB3	no	no	0.239	0.233	0.515	2e-11
P81393	232	Myb-related protein 308 O	N/A	no	0.404	0.465	0.382	3e-11
P81394	268	Myb-related protein 315 O	N/A	no	0.157	0.156	0.714	3e-11
Q7XBH4	257	Myb-related protein Myb4	no	no	0.146	0.151	0.743	4e-11
Q9FJA2	258	Transcription factor TT2	no	no	0.333	0.344	0.405	6e-11
Q38850	249	Transcription repressor M	no	no	0.172	0.184	0.625	6e-11
P20024	340	Myb-related protein Zm1 O	N/A	no	0.224	0.176	0.5	8e-11
Q9SPG2	366	Transcription factor MYB2	no	no	0.172	0.125	0.604	9e-11

>sp|P81392|MYB06_ANTMA Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1

 Score =  219 bits (559), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 142/264 (53%), Positives = 169/264 (64%), Gaps = 37/264 (14%)

Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDG-FSS 59
           MIIHLQALLGNRWAAIASYLP RTDNDIKNYWNTHLKKKL+KLQ+  +G    QDG  S 
Sbjct: 77  MIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKKLEKLQSPENG--KCQDGNSSV 134

Query: 60  TSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPDQSNLKPMSSTTY 119
            S ++ +KGQWERRLQTDIHMAKQALC+ALSLDKTS ++    L +   +  +P  ++TY
Sbjct: 135 DSDKSVSKGQWERRLQTDIHMAKQALCDALSLDKTSSSTDDPKLSTVQTTQPRPFQASTY 194

Query: 120 NNTPYASNAENISRLLQNWMKNPP---------KISETTQDSFTNTAYASAAGSGSNISS 170
                 S+AENI+RLL+NW K  P           SE+T  SF    Y S   S S+  S
Sbjct: 195 ------SSAENIARLLENWKKKSPVNASSTSQAGSSESTTTSFN---YPSVCLSTSS-PS 244

Query: 171 EGALSATTPEGFDSLFSFNSSNSDASQSETTANLTSETSL--FQDESKPKLDSRHHHHHQ 228
           EGA+S        +  SFNSSNSD  +    A   + T+   FQDESKP LD      +Q
Sbjct: 245 EGAIST-------NFISFNSSNSDILEDHDQAKFEAATNGVNFQDESKPILD------NQ 291

Query: 229 VPLTLLEKWLFDDVAAAHQGHDDD 252
           +PL+LLEKWL DD AA  QG D D
Sbjct: 292 MPLSLLEKWLLDDSAAVAQGQDVD 315

Transcription factor.
Antirrhinum majus (taxid: 4151)

>sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 38/47 (80%), Gaps = 2/47 (4%)

Query: 2   IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSD 48
           I+ L ALLGN+W+ IA +LP RTDN+IKNYWNTH++KKL  LQ G D
Sbjct: 79  IVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKL--LQMGID 123

Arabidopsis thaliana (taxid: 3702)

>sp|O49608|MYB32_ARATH Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 2/66 (3%)

Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDGFSST 60
           +II L +LLGN+W+ IA+ LP RTDN+IKNYWNTH+K+KL  L+ G D   +     + T
Sbjct: 77  LIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKL--LRKGIDPATHRPINETKT 134

Query: 61  SQQASN 66
           SQ +S+
Sbjct: 135 SQDSSD 140

Arabidopsis thaliana (taxid: 3702)

>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 70/128 (54%), Gaps = 20/128 (15%)

Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSD--------GGQN 52
           +II L +LLGN+W+ IA  LP RTDN+IKNYWNTH+++KL  L  G D         G  
Sbjct: 77  LIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL--LSRGIDPTTHRSINDGTA 134

Query: 53  NQDGFSSTSQQASNKGQWE--RRLQTDIHMAK-----QALCEALSLD-KTSPTSPANLLL 104
           +QD  ++ S   +N  + +   ++  DI + +     Q  C  L+LD K SP  P    +
Sbjct: 135 SQDQVTTISFSNANSKEEDTKHKVAVDIMIKEENSPVQERCPDLNLDLKISP--PCQQQI 192

Query: 105 SPDQSNLK 112
           +  Q NLK
Sbjct: 193 NYHQENLK 200

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|P81394|MYB15_ANTMA Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 35/42 (83%)

Query: 2   IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKL 43
           II L A LGNRW+ IA ++P RTDN+IKNYWNTH+KKKLK L
Sbjct: 78  IIELHAHLGNRWSKIALHIPGRTDNEIKNYWNTHIKKKLKLL 119

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2

 Score = 68.9 bits (167), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 29/39 (74%), Positives = 34/39 (87%)

Query: 2   IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 40
           IIHL  LLGNRW+AIA+ LP RTDN+IKN W+THLKK+L
Sbjct: 78  IIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 116

Putative transcription factor which is may be involved in cold stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FJA2|TT2_ARATH Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 55/106 (51%), Gaps = 17/106 (16%)

Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGS----DGGQNNQDG 56
           +II L  LLGNRW+ IA  LP RTDN+IKN+WN++L+K+L K QT          NN++ 
Sbjct: 79  LIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRKRLPKTQTKQPKRIKHSTNNENN 138

Query: 57  FSSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANL 102
                 +A             I  +K  L   LSL K S TSP  L
Sbjct: 139 VCVIRTKA-------------IRCSKTLLFSDLSLQKKSSTSPLPL 171

Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS).

Arabidopsis thaliana (taxid: 3702)

>sp|Q38850|MYB5_ARATH Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/48 (62%), Positives = 37/48 (77%), Gaps = 2/48 (4%)

Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSD 48
           +I+ L  LLGNRW+ IA  +P RTDN+IKNYWNTHL+KKL  L+ G D
Sbjct: 88  LILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKL--LRQGID 133

Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8.

Arabidopsis thaliana (taxid: 3702)

>sp|P20024|MYB1_MAIZE Myb-related protein Zm1 OS=Zea mays PE=2 SV=1

 Score = 67.8 bits (164), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 2   IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDGFSSTS 61
           II L  LLGN+W+ IA+ LP RTDN+IKN WNTHLKKK+ + +    G  +   G  +T+
Sbjct: 80  IIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKKVAQREKKKAGAGSGDAGTPATA 139

Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1.

Zea mays (taxid: 4577)

>sp|Q9SPG2|MYB28_ARATH Transcription factor MYB28 OS=Arabidopsis thaliana GN=MYB28 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 29/48 (60%), Positives = 38/48 (79%), Gaps = 2/48 (4%)

Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSD 48
           +II L A  GN+W+ IA +LP+RTDN+IKNYWNTHLKK+L  ++ G D
Sbjct: 77  IIIMLHASRGNKWSVIARHLPRRTDNEIKNYWNTHLKKRL--MEQGID 122

Major regulator of aliphatic glucosinolates (GLSs) biosynthesis, both short- or long-chained. Together with MYB29/HAG3 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae and Spodoptera exigua) by promoting glucosinolates.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
255547411	332	r2r3-myb transcription factor, putative	0.868	0.698	0.539	1e-63
302398935	374	MYB domain class transcription factor [M	0.951	0.679	0.540	3e-62
363806964	319	uncharacterized protein LOC100807020 [Gl	0.906	0.758	0.544	1e-60
225457423	307	PREDICTED: myb-related protein 306 [Viti	0.857	0.745	0.593	3e-60
117957143	307	R2R3 Myb30 transcription factor [Vitis v	0.850	0.739	0.589	3e-60
356516796	333	PREDICTED: myb-related protein 306-like	0.940	0.753	0.516	1e-57
357458775	310	R2R3-MYB transcription factor [Medicago	0.861	0.741	0.487	1e-57
224140977	322	predicted protein [Populus trichocarpa]	0.831	0.689	0.524	1e-55
75107027	316	RecName: Full=Myb-related protein 306 gi	0.850	0.718	0.537	6e-55
318611279	275	R2R3-MYB transcription factor [Lupinus a	0.921	0.894	0.523	1e-54

>gi|255547411|ref|XP_002514763.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223546367|gb|EEF47869.1| r2r3-myb transcription factor, putative [Ricinus communis]

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 156/289 (53%), Positives = 188/289 (65%), Gaps = 57/289 (19%)

Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDGFSST 60
           MI+HLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL +L+ G D  +       S 
Sbjct: 79  MIVHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLTELKDGQDLDR------LSV 132

Query: 61  SQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSP----------------ANLLL 104
           SQ    KGQWERRLQTDIH+AKQALCEALSLDK  PT+P                +NL++
Sbjct: 133 SQP---KGQWERRLQTDIHLAKQALCEALSLDK--PTTPLTHLKPSVATTGANGASNLII 187

Query: 105 SPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTAYASAAGS 164
            P Q+        +  +T YAS+AENI+RLL+NWMKN P+   T ++S +          
Sbjct: 188 RPYQAQ------ESNTSTAYASSAENIARLLENWMKNSPRQVLTAENSSS---------- 231

Query: 165 GSNISSEGALSATTPEG---FDSLFSFNSSNSDASQS-ETTANLTSETSLFQDESKPKLD 220
               S+EGA S T P            +SSNSDASQS +  ANLT ETSLFQDESK  ++
Sbjct: 232 ----STEGAHSTTIPSSQGFNLLFSFNSSSNSDASQSVDENANLTPETSLFQDESKSDME 287

Query: 221 SRHHHHH--QVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGFF 267
             HH+HH  QVPL+LLEKWLFD+ A   QGH  DDL+N+SLE++ +G F
Sbjct: 288 DNHHNHHLQQVPLSLLEKWLFDEGAV--QGH--DDLVNISLEETAIGLF 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398935|gb|ADL36762.1| MYB domain class transcription factor [Malus x domestica]

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 168/311 (54%), Positives = 196/311 (63%), Gaps = 57/311 (18%)

Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDG--GQNNQDGFS 58
           MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTG DG    N+QDG  
Sbjct: 77  MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGLDGHDHHNHQDG-- 134

Query: 59  STSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPDQSNLKP----- 113
           ++  Q  +KGQWERRLQTDIHMAKQALCEALS+DK +  S   +       +LKP     
Sbjct: 135 NSHDQPISKGQWERRLQTDIHMAKQALCEALSIDKPNVISTTTVSHDLHLQDLKPSINIG 194

Query: 114 ---------MSSTTYNNTPYASNAENISRLLQNWMKNPPKIS--ETTQD--------SFT 154
                     S+  ++ + YASN ENI++LL+NWMKN PK+S  +T  D        SF 
Sbjct: 195 NYNINDNPSTSTRPHHTSTYASNTENIAKLLENWMKNSPKVSAHQTNSDQTNADQTNSFN 254

Query: 155 NT----------AYASAAGSGSNISSEGALSATTP--EGFDSLFSFNSSNSDASQS---- 198
           N           A A+  G   + SSEGA SATT   + FDSLFSFNSS SD SQS    
Sbjct: 255 NNNNNDNDNKGGATATTRGRSMSTSSEGAHSATTTPDQAFDSLFSFNSSPSDVSQSMSVD 314

Query: 199 ETTANLTSE--TSLFQDESKPKLDSRHHHHHQVPLTLLEKWLFDDVAAAHQGHDDDDLIN 256
           E  AN  ++  + LFQDESKP L+       QVPL+LLEKWL DD A     H  +DLIN
Sbjct: 315 ENNANFIADQASCLFQDESKPNLEG------QVPLSLLEKWLLDDAAP----HAHEDLIN 364

Query: 257 MSLEDSTVGFF 267
           +SLE+   G F
Sbjct: 365 ISLENG-AGLF 374

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806964|ref|NP_001242312.1| uncharacterized protein LOC100807020 [Glycine max] gi|255639323|gb|ACU19959.1| unknown [Glycine max]

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 146/268 (54%), Positives = 172/268 (64%), Gaps = 26/268 (9%)

Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDGFSST 60
           MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK+++G D   NN D  +S 
Sbjct: 77  MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKMRSGGDDDDNNDDKLNSC 136

Query: 61  SQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPDQSNLKPMSSTTYN 120
           + Q   KGQWERRLQTDIHMAKQALCEALSLDK +   P   L  P  S+  P  +TT N
Sbjct: 137 NSQI--KGQWERRLQTDIHMAKQALCEALSLDKPTQIFPETKL--PSTSSHNP--TTTPN 190

Query: 121 NTP-YASNAENISRLLQNWMKNPPKISETTQDSFTNTAYASAAGSGSNISSEGALSATTP 179
            T  YAS+ ENI++LL+NWMK  P I+  T+    N     A GS S+  ++  ++ T  
Sbjct: 191 QTSLYASSTENIAKLLENWMKKSPNITTITETKPFNINNMVATGSSSSEGTQSTITCTQD 250

Query: 180 EGFDSLFSFNSSNSDASQSETTANLTSETSLFQDESKPKLDSRHHHHHQVPLTLLEKWLF 239
              DSL+SFNS  S   QSE   NL         ESKP+     +   QVPL LLE WL 
Sbjct: 251 HALDSLWSFNSERS--CQSEENTNL--------GESKPQ-----YQEAQVPLMLLENWLL 295

Query: 240 DDVAAAHQGHDDDDLINMSLEDSTVGFF 267
           DD A       ++DL+NMSLE+ST G F
Sbjct: 296 DDAAP----QCNEDLMNMSLEESTEGLF 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457423|ref|XP_002284926.1| PREDICTED: myb-related protein 306 [Vitis vinifera]

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 158/266 (59%), Positives = 183/266 (68%), Gaps = 37/266 (13%)

Query: 2   IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDGFSSTS 61
           IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK  TG D   +NQDGFS + 
Sbjct: 78  IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFPTGVD--DHNQDGFSIS- 134

Query: 62  QQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPDQSNLKPMSSTTYNN 121
                KGQWERRLQTDIHMAKQALCEALS+D TS + P     +    N +P+ ++T   
Sbjct: 135 -----KGQWERRLQTDIHMAKQALCEALSID-TSSSLPDLKSSNGYNPNTRPVQAST--- 185

Query: 122 TPYASNAENISRLLQNWMKNPPKISETTQDSFTNTAYASAAGSGSNISSEGALSATTPEG 181
             YAS+AENI++LL+ WM+N PK + T           S A   S  SSEG   ATTP+ 
Sbjct: 186 --YASSAENIAKLLEGWMRNSPKSTRTN----------SEATQNSKNSSEG---ATTPDA 230

Query: 182 FDSLFSFNSSNSDASQSET-TANLTSETSLFQDESKPKLDSRHHHHHQVPLTLLEKWLFD 240
            DSLFSFNSSNSD S S   TAN T ET LFQDESKP L++      QVPLT++EKWLFD
Sbjct: 231 LDSLFSFNSSNSDLSLSNDETANFTPETILFQDESKPNLET------QVPLTMIEKWLFD 284

Query: 241 DVAAAHQGHDDDDLINMSLEDSTVGF 266
           + AA  +    +DLI+MSLED+   F
Sbjct: 285 EGAATQE---QEDLIDMSLEDTAQLF 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|117957143|gb|ABK59040.1| R2R3 Myb30 transcription factor [Vitis vinifera]

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 158/268 (58%), Positives = 185/268 (69%), Gaps = 41/268 (15%)

Query: 2   IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDGFSSTS 61
           IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK  TG D   +NQDGFS + 
Sbjct: 78  IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFPTGVD--DHNQDGFSIS- 134

Query: 62  QQASNKGQWERRLQTDIHMAKQALCEALSLDKTS--PTSPANLLLSPDQSNLKPMSSTTY 119
                KGQWERRLQTDIHMAKQALCEALS+D +S  P   ++   +P   N +P+ ++T 
Sbjct: 135 -----KGQWERRLQTDIHMAKQALCEALSIDTSSSLPDLKSSNGYNP---NTRPVQAST- 185

Query: 120 NNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTAYASAAGSGSNISSEGALSATTP 179
               YAS+AENI++LL+ WM+N PK + T           S A   S  SSEG   ATTP
Sbjct: 186 ----YASSAENIAKLLEGWMRNSPKSTRTN----------SEATQNSKNSSEG---ATTP 228

Query: 180 EGFDSLFSFNSSNSDASQSET-TANLTSETSLFQDESKPKLDSRHHHHHQVPLTLLEKWL 238
           +  DSLFSFNSSNSD S S   TAN T ET LFQDESKP L++      QVPLT++EKWL
Sbjct: 229 DALDSLFSFNSSNSDLSLSNDETANFTPETILFQDESKPNLET------QVPLTMIEKWL 282

Query: 239 FDDVAAAHQGHDDDDLINMSLEDSTVGF 266
           FD+ AA  +    +DLI+MSLED+   F
Sbjct: 283 FDEGAATQE---QEDLIDMSLEDTAQLF 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516796|ref|XP_003527079.1| PREDICTED: myb-related protein 306-like [Glycine max]

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 141/273 (51%), Positives = 170/273 (62%), Gaps = 22/273 (8%)

Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDGFSST 60
           MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK+Q G     +N D  S++
Sbjct: 77  MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKMQIGGGSDDDNNDDKSNS 136

Query: 61  SQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSP-ANLLLSPDQSNLKPMSSTTY 119
           S  +  KGQWERRLQTDIHMAKQALCEALSLDK +   P   L  +    +    ++   
Sbjct: 137 SNNSQIKGQWERRLQTDIHMAKQALCEALSLDKPTQIFPETKLPSTSSHHHPTTTTTPNQ 196

Query: 120 NNTPYASNAENISRLLQNWMKNPPKISETTQ-----DSFTNTAYASAAGSGSNISSEGAL 174
             + YAS+ ENI+RLL+NWMK  P ++ TT        F+N       GS S+  ++  +
Sbjct: 197 TTSLYASSTENIARLLENWMKKSPNMTTTTTTTMETKPFSNNNMVITTGSSSSEGTQSTI 256

Query: 175 SATTPEGFDSLFSFNSSNSDASQSETTANLTSETSLFQDESKPKLDSRHHHHHQVPLTLL 234
           + T     DSL+SFNS  S  SQSE   NL         ESKP+   +     QVPL LL
Sbjct: 257 TCTQEYALDSLWSFNSERS--SQSEENTNL--------GESKPQY--QEPQETQVPLMLL 304

Query: 235 EKWLFDDVAAAHQGHDDDDLINMSLEDSTVGFF 267
           E WLFDD A       ++DL+NMSLE+ST G F
Sbjct: 305 ENWLFDDAAP----QCNEDLMNMSLEESTEGLF 333

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458775|ref|XP_003599668.1| R2R3-MYB transcription factor [Medicago truncatula] gi|355488716|gb|AES69919.1| R2R3-MYB transcription factor [Medicago truncatula]

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/271 (48%), Positives = 164/271 (60%), Gaps = 41/271 (15%)

Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDGFSST 60
           MIIHLQALLGNRWAAIASYLP+RTDNDIKNYWNTHL+KKLKK+    D  +  ++     
Sbjct: 77  MIIHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLRKKLKKINQTGDENEVEENSIPQV 136

Query: 61  SQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPDQSNLKPMSSTTYN 120
                 KGQWERRLQTDIHMAKQALCEALSLDK +P      +L+ +Q+           
Sbjct: 137 ------KGQWERRLQTDIHMAKQALCEALSLDKPTP------ILAENQT----------- 173

Query: 121 NTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTAYASAAGSGSNISSEGALSATTP- 179
            +PYASN ENI+RLL+ WMK P    ETT    +  +     GSGS    +  ++     
Sbjct: 174 -SPYASNTENIARLLEKWMKKPENSVETTN---SGNSIMVVTGSGSREGGQNTIACKQKD 229

Query: 180 EGFDSLFSFNSSNSDASQS---ETTANLTSETSLFQDESKPKLDSRHHHHHQVPLTLLEK 236
           + FDSL SFNS NSD SQS   E    L  ++  FQ +SKP      +   Q PL  +E 
Sbjct: 230 QAFDSLVSFNSLNSDCSQSVSVEEKNFLAMDSCFFQYQSKP------NQETQDPLMFMEN 283

Query: 237 WLFDDVAAAHQGHDDDDLINMSLEDSTVGFF 267
           W FDD AA      ++DL+N+S+E++T G F
Sbjct: 284 WPFDDEAA----QCNEDLMNVSMEENTPGLF 310

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140977|ref|XP_002323853.1| predicted protein [Populus trichocarpa] gi|222866855|gb|EEF03986.1| predicted protein [Populus trichocarpa]

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 137/261 (52%), Positives = 170/261 (65%), Gaps = 39/261 (14%)

Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDGFSST 60
           MIIHLQALLGNRWAAIASYLPQRTDNDIKN+WNTHLKKKL+KLQ G +G   ++DG SST
Sbjct: 77  MIIHLQALLGNRWAAIASYLPQRTDNDIKNFWNTHLKKKLRKLQAGQEG--QSRDGLSST 134

Query: 61  SQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLL--LSPDQSNLKPMSSTT 118
             Q  ++GQWERRLQTDI+MA+QALCEAL     SP  P++LL  L P     KP +   
Sbjct: 135 GSQQISRGQWERRLQTDINMARQALCEAL-----SPGKPSSLLTGLKPSCGYEKPATEPI 189

Query: 119 YNNTPYASNAENISRLLQNWMKNPPKIS---ETTQDSFTNTAYASAAGSGSNISSEGALS 175
                YAS+ ENISRLL+ WM + PK S    TTQ+SF +TA A +      +SSEG   
Sbjct: 190 -----YASSTENISRLLKGWMISGPKQSLKNSTTQNSFIDTAGADS------LSSEGTPD 238

Query: 176 ATTPEG------FDSLFSFNSSNSDASQSETTANLTSETSLFQDESKPKLDSRHHHHHQV 229
                G      F+SL  F   + D+S S+ + +++ +T LFQDESKP      +   QV
Sbjct: 239 KADKNGTGLSQAFESL--FGFDSFDSSNSDFSQSMSPDTGLFQDESKP------NSSAQV 290

Query: 230 PLTLLEKWLFDDVAAAHQGHD 250
           PL+L+E+WLFD+   A QG D
Sbjct: 291 PLSLIERWLFDE--GAMQGKD 309

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75107027|sp|P81392.1|MYB06_ANTMA RecName: Full=Myb-related protein 306 gi|256828|gb|AAB23528.1| Myb oncoprotein homolog {clone 306} [Antirrhinum majus=snapdragons, J1:522, flowers, Peptide, 316 aa]

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 142/264 (53%), Positives = 169/264 (64%), Gaps = 37/264 (14%)

Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDG-FSS 59
           MIIHLQALLGNRWAAIASYLP RTDNDIKNYWNTHLKKKL+KLQ+  +G    QDG  S 
Sbjct: 77  MIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKKLEKLQSPENG--KCQDGNSSV 134

Query: 60  TSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPDQSNLKPMSSTTY 119
            S ++ +KGQWERRLQTDIHMAKQALC+ALSLDKTS ++    L +   +  +P  ++TY
Sbjct: 135 DSDKSVSKGQWERRLQTDIHMAKQALCDALSLDKTSSSTDDPKLSTVQTTQPRPFQASTY 194

Query: 120 NNTPYASNAENISRLLQNWMKNPP---------KISETTQDSFTNTAYASAAGSGSNISS 170
                 S+AENI+RLL+NW K  P           SE+T  SF    Y S   S S+  S
Sbjct: 195 ------SSAENIARLLENWKKKSPVNASSTSQAGSSESTTTSFN---YPSVCLSTSS-PS 244

Query: 171 EGALSATTPEGFDSLFSFNSSNSDASQSETTANLTSETSL--FQDESKPKLDSRHHHHHQ 228
           EGA+S        +  SFNSSNSD  +    A   + T+   FQDESKP LD      +Q
Sbjct: 245 EGAIST-------NFISFNSSNSDILEDHDQAKFEAATNGVNFQDESKPILD------NQ 291

Query: 229 VPLTLLEKWLFDDVAAAHQGHDDD 252
           +PL+LLEKWL DD AA  QG D D
Sbjct: 292 MPLSLLEKWLLDDSAAVAQGQDVD 315

Source: Antirrhinum majus

Species: Antirrhinum majus

Genus: Antirrhinum

Family: Plantaginaceae

Order: Lamiales

Class: N/A

Phylum: Streptophyta

>gi|318611279|dbj|BAJ61426.1| R2R3-MYB transcription factor [Lupinus albus]

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 145/277 (52%), Positives = 172/277 (62%), Gaps = 31/277 (11%)

Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDGFSST 60
           MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHL+K   KLQ G  G  +NQ+G SS+
Sbjct: 20  MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLRKNHNKLQNG--GNDHNQEGHSSS 77

Query: 61  SQ--QASNKGQWERRLQTDIHMAKQALCEALSLDK-TSPTSPAN--LLLSPDQSNLKPMS 115
           S   Q  +KGQWERRLQTDI MAKQAL EALS  K T+ T P    L      +      
Sbjct: 78  SSSAQEQSKGQWERRLQTDIQMAKQALSEALSFHKPTTNTFPETKPLTFHIHTTTTSTYP 137

Query: 116 STTYNNTP-YASNAENISRLLQNWMKNPPKISETTQDSFTNTAYASAAGSGSNISSEGAL 174
           +   NN P YAS+ ENIS+LL+NWM   P     T +SF+N    + +      SSEG  
Sbjct: 138 TNQPNNAPSYASSYENISKLLKNWMMRSPN----TPNSFSNNMVTTGS-----CSSEGGN 188

Query: 175 S----ATTPEGFDSLFSFNSSNSDASQSETTANLTSETSLFQDESKPKLDSRHHHHHQVP 230
           S     T    FDSL SFNSS     + + T   T++T +FQD  K  ++++     QVP
Sbjct: 189 STTDQCTQDHAFDSLLSFNSSKFVVEEIKNTLT-TNKTGVFQDLRKTNMETQ-----QVP 242

Query: 231 LTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGFF 267
            TLLE WLFDD A   Q H  DDL+NMSLE+ST+G F
Sbjct: 243 FTLLENWLFDDGAV--QCH--DDLMNMSLEESTLGLF 275

Source: Lupinus albus

Species: Lupinus albus

Genus: Lupinus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
TAIR|locus:2019185	330	MYB31 "myb domain protein 31"	0.876	0.709	0.412	1.1e-39
TAIR|locus:2090764	323	MYB30 "myb domain protein 30"	0.576	0.476	0.485	1.2e-35
TAIR|locus:2079182	333	MYB94 "myb domain protein 94"	0.906	0.726	0.398	1.5e-33
TAIR|locus:2154119	352	MYB96 "myb domain protein 96"	0.823	0.625	0.397	1.1e-32
TAIR|locus:2025565	280	MYB60 "myb domain protein 60"	0.131	0.125	0.942	6.1e-27
TAIR|locus:2150891	326	MYB16 "myb domain protein 16"	0.303	0.248	0.445	1.1e-15
TAIR|locus:2102152	388	MYB106 "myb domain protein 106	0.468	0.322	0.340	1.2e-13
TAIR|locus:2038520	246	MYB13 "myb domain protein 13"	0.475	0.516	0.340	4.1e-10
TAIR|locus:2205283	282	MYB20 "myb domain protein 20"	0.131	0.124	0.685	1.2e-09
TAIR|locus:2174195	327	MYB43 "myb domain protein 43"	0.127	0.103	0.705	1.6e-09

TAIR|locus:2019185 MYB31 "myb domain protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 115/279 (41%), Positives = 149/279 (53%)

Query:     1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHXXXXXXXX--QTG----------SD 48
             MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH          Q G          +D
Sbjct:    77 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLVMMKFQNGIINENKTNLATD 136

Query:    49 -GGQNNQDGFSSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPD 107
                 NN +   + +++ +NKGQWE++LQTDI+MAKQAL +ALSLD+  P+S    L+ PD
Sbjct:   137 ISSCNNNNNGCNHNKRTTNKGQWEKKLQTDINMAKQALFQALSLDQ--PSS----LIPPD 190

Query:   108 QSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTXXXXXXXXXXX 167
               + KP   +T   T YAS+ +NIS+LLQNW  +    S+    S +N            
Sbjct:   191 PDSPKPHHHST---TTYASSTDNISKLLQNWTSSSS--SKPNTSSVSNNRS--------- 236

Query:   168 XXXXXXLSATTPEGXXXXXXXXXXXXXXXXXETTANLTSETSLFQDESKPKLD-----SR 222
                    S+    G                 +   NL SETS+F+ ESKP +D     + 
Sbjct:   237 -------SSPGEGGLFDHHSLFSSNSESGSVDEKLNLMSETSMFKGESKPDIDMEATPTT 289

Query:   223 HHHHHQVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLED 261
                  Q  L+L+EKWLFDD          +DLI++SLE+
Sbjct:   290 TTTDDQGSLSLIEKWLFDDQGLVQCDDSQEDLIDVSLEE 328

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2090764 MYB30 "myb domain protein 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
 Identities = 82/169 (48%), Positives = 104/169 (61%)

Query:     1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHXXXXXXXXQTGS----DGGQNNQDG 56
             MI+HLQALLGNRWAAIASYLPQRTDNDIKNYWNTH           S    D    +   
Sbjct:    77 MIVHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLNKVNQDSHQELDRSSLSSSP 136

Query:    57 FSSTSQQASN--KGQWERRLQTDIHMAKQALCEALSLDKTSP--TSPANLLLSPDQSNLK 112
              SS++   SN  +GQWERRLQTDIH+AK+AL EALS    +P  TS      S  +S   
Sbjct:   137 SSSSANSNSNISRGQWERRLQTDIHLAKKALSEALS-PAVAPIITSTVTTTSSSAESRRS 195

Query:   113 PMSSTTY-----NNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNT 156
               S++ +      +T YAS+ ENI++LL+ W+KN PK ++ + D   +T
Sbjct:   196 TSSASGFLRTQETSTTYASSTENIAKLLKGWVKNSPK-TQNSADQIAST 243

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009617 "response to bacterium" evidence=IEP

GO:0009626 "plant-type hypersensitive response" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042761 "very long-chain fatty acid biosynthetic process" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2079182 MYB94 "myb domain protein 94" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 112/281 (39%), Positives = 138/281 (49%)

Query:     1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHXXXXXXXXQTGSDG----GQNNQDG 56
             MI+HLQALLGNRWAAIASYLP+RTDNDIKNYWNTH            D     G +N+D 
Sbjct:    77 MILHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKKKLKKMNDSCDSTINNGLDNKD- 135

Query:    57 FS-----STSQQASN--KGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPD-- 107
             FS     +TS Q+SN  KGQWERRLQTDI+MAKQALC+ALS+DK  P +P N  + PD  
Sbjct:   136 FSISNKNTTSHQSSNSSKGQWERRLQTDINMAKQALCDALSIDK--PQNPTNFSI-PDLG 192

Query:   108 QSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTXXXXXXXXXXX 167
                    SSTT   T   +     S +  +  +N  ++ +        T           
Sbjct:   193 YGPSSSSSSTTTTTTTTRNTNPYPSGVYASSAENIARLLQNFMKDTPKTSVPLPVAATEM 252

Query:   168 XXXXXXLSATTPEGXXXXXXXXXXXXXXXXXETTANLTSETSLFQDESKPKLDSRHHHH- 226
                    S +T EG                     +L S  S+ + E KPKL     +  
Sbjct:   253 AITTAASSPSTTEGDGEGIDH--------------SLFSFNSIDEAEEKPKLIDHDINGL 298

Query:   227 -HQVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGF 266
               Q  L+L EKWLFD+     Q HD   + NMSLE   V F
Sbjct:   299 ITQGSLSLFEKWLFDE-----QSHDMI-INNMSLEGQEVLF 333

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2154119 MYB96 "myb domain protein 96" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 97/244 (39%), Positives = 127/244 (52%)

Query:     2 IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHXXXXXXXXQTGSDGGQNNQDGFSST- 60
             I+HLQALLGNRWAAIASYLP+RTDNDIKNYWNTH           ++ G+ + DG SS+ 
Sbjct:    78 IVHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKKKLKKI---NESGEEDNDGVSSSN 134

Query:    61 --SQ---QASNKGQWERRLQTDIHMAKQALCEALSLDKTSPT-SPANLLLSP--DQSNLK 112
               SQ   Q++NKGQWERRLQTDI+MAKQALCEALSLDK S T S ++ L +P   Q N++
Sbjct:   135 TSSQKNHQSTNKGQWERRLQTDINMAKQALCEALSLDKPSSTLSSSSSLPTPVITQQNIR 194

Query:   113 PMSSTTYNNT--PYASNAENISRLLQNWMKNP-PK-ISETTQDSFTNTXXXXXXXX--XX 166
               SS   +    P +S++   +    N   NP P  +  ++ ++                
Sbjct:   195 NFSSALLDRCYDPSSSSSSTTTTTTSN-TTNPYPSGVYASSAENIARLLQDFMKDTPKAL 253

Query:   167 XXXXXXXLSATTPEGXXXXXXXXX----XXXXXXXXETTANLTSETSLFQDES-KPKLDS 221
                    +S T P                       + T NLT ETS F D+  KP++  
Sbjct:   254 TLSSSSPVSETGPLTAAVSEEGGEGFEQSFFSFNSMDETQNLTQETSFFHDQVIKPEITM 313

Query:   222 RHHH 225
                H
Sbjct:   314 DQDH 317

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IMP

TAIR|locus:2025565 MYB60 "myb domain protein 60" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 6.1e-27, Sum P(3) = 6.1e-27
 Identities = 33/35 (94%), Positives = 35/35 (100%)

Query:     1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH 35
             MIIHLQALLGN+WA+IASYLPQRTDNDIKNYWNTH
Sbjct:    77 MIIHLQALLGNKWASIASYLPQRTDNDIKNYWNTH 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010118 "stomatal movement" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2150891 MYB16 "myb domain protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
 Identities = 41/92 (44%), Positives = 57/92 (61%)

Query:     2 IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHXXXXXXXXQTGSDGGQN---NQDGFS 58
             II L ALLGNRW+AIA++LP+RTDN+IKNYWNTH        + G D   +   N+   S
Sbjct:    78 IIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLV--KMGIDPVTHKPKNETPLS 135

Query:    59 ST--SQQA---SNKGQWER-RLQTDIHMAKQA 84
             S   S+ A   S+  QWE  RL+ +  +A+++
Sbjct:   136 SLGLSKNAAILSHTAQWESARLEAEARLARES 167

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2102152 MYB106 "myb domain protein 106" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 46/135 (34%), Positives = 69/135 (51%)

Query:     2 IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHXXXXXXXXQTGSDGGQNNQDGFSSTS 61
             II L ALLGNRW+AIA++LP+RTDN+IKNYWNTH               ++  +  SS++
Sbjct:   121 IIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLIKMGIDPVTHKHKNETLSSST 180

Query:    62 QQASNKG------QWER-RLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPDQSNLKPM 114
              Q+ N        QWE  RL+ +  +A+++  + L L      +  N   +P Q      
Sbjct:   181 GQSKNAATLSHMAQWESARLEAEARLARES--KLLHLQHYQNNNNLNKSAAPQQHCFTQK 238

Query:   115 SSTTYNNTPYASNAE 129
             +ST +   P   N +
Sbjct:   239 TSTNWTK-PNQGNGD 252

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0010091 "trichome branching" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2038520 MYB13 "myb domain protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 48/141 (34%), Positives = 70/141 (49%)

Query:     2 IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHXXXXXXXXQTGSDGGQNNQDGF-SST 60
             II L  LLGNRW+AIA+ LP RTDN+IKN W+TH        Q      QNN++ F S+T
Sbjct:    78 IISLHQLLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLHHSQD-----QNNKEDFVSTT 132

Query:    61 SQQASNKGQWERRLQTDIHMAKQALC---EALSLDKTSPTSPANLLLSPDQSNLKPMSST 117
             + +     Q +     DI  A   L    +  + +K S TS  ++L   D+S     S  
Sbjct:   133 AAEMPTSPQQQSSSSADIS-AITTLGNNNDISNSNKDSATSSEDVLAIIDESF---WSEV 188

Query:   118 TYNNTPYASNAENISRLLQNW 138
                +   + N +N  + ++NW
Sbjct:   189 VLMDCDISGNEKN-EKKIENW 208

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2205283 MYB20 "myb domain protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 24/35 (68%), Positives = 30/35 (85%)

Query:     1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH 35
             M+I L + LGNRW+ IAS+LP RTDN+IKN+WNTH
Sbjct:    77 MVIDLHSQLGNRWSKIASHLPGRTDNEIKNHWNTH 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2174195 MYB43 "myb domain protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
 Identities = 24/34 (70%), Positives = 30/34 (88%)

Query:     2 IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH 35
             +I+L A LGNRW+ IAS+LP RTDN+IKN+WNTH
Sbjct:    78 VINLHAQLGNRWSKIASHLPGRTDNEIKNHWNTH 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	267
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	5e-12
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	3e-11
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	4e-09
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	6e-08
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-07

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score = 63.9 bits (155), Expect = 5e-12
 Identities = 30/48 (62%), Positives = 37/48 (77%), Gaps = 2/48 (4%)

Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSD 48
           +I+ L  LLGNRW+ IA  +P RTDN+IKNYWNTHL+KKL  L+ G D
Sbjct: 88  LILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKL--LRQGID 133

Length = 249

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score = 62.7 bits (152), Expect = 3e-11
 Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 28/174 (16%)

Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSD-----------G 49
           +II L A+LGNRW+ IA+ LP RTDN+IKN WN+ LKKKL+  Q G D            
Sbjct: 77  LIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLR--QRGIDPNTHKPLSEVEN 134

Query: 50  GQNNQDGFSSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPDQS 109
           G++        S +AS+    E  L    +    A   AL   ++S  SPA   L  + S
Sbjct: 135 GEDKNPPTDDKSDKASSVVSNELNLLKADNSKPLA---ALQEKRSSSISPAGYQLEVESS 191

Query: 110 NLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTAYASAAG 163
           +   ++++  NN               + +  P    +   D FT +  +S   
Sbjct: 192 SSSKINNSNNNNHS------------NSNLMTPTPNKDFFLDRFTTSHESSTTS 233

Length = 459

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 51.0 bits (123), Expect = 4e-09
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 2  IIHLQALLGNR-WAAIASYLPQRTDNDIKNYWNTHL 36
          +I      GN  W+ IA +LP RTDN  KN WN +L
Sbjct: 12 LIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 48.0 bits (115), Expect = 6e-08
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 1  MIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKK 38
          ++I L    G N W  IA  LP RT    +  W   LK 
Sbjct: 11 LLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 1  MIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHL 36
          +++      G N W  IA  LP RT    +  W   L
Sbjct: 9  LLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	267
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.58
PLN03212	249	Transcription repressor MYB5; Provisional	99.23
PLN03091	459	hypothetical protein; Provisional	99.15
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	98.45
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.44
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	98.43
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.34
PLN03212	249	Transcription repressor MYB5; Provisional	97.61
PLN03091	459	hypothetical protein; Provisional	97.06
KOG0048	238	consensus Transcription factor, Myb superfamily [T	96.72
COG5147	512	REB1 Myb superfamily proteins, including transcrip	94.42
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	93.86
KOG0049	939	consensus Transcription factor, Myb superfamily [T	93.79
COG5147	512	REB1 Myb superfamily proteins, including transcrip	93.43
KOG0049	939	consensus Transcription factor, Myb superfamily [T	91.56

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.58  E-value=1.3e-15  Score=136.27  Aligned_cols=46  Identities=65%  Similarity=1.047  Sum_probs=43.6

Q ss_pred             CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHHHHHHhhcCC
Q 024479            1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTG   46 (267)
Q Consensus         1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~LrKklkk~~~~   46 (267)
                      +||+||++|||||++||++|||||||+||||||++|||+++++..+
T Consensus        72 ~Ii~lH~~~GNrWs~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~~~  117 (238)
T KOG0048|consen   72 LIIKLHALLGNRWSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMGID  117 (238)
T ss_pred             HHHHHHHHHCcHHHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcCCC
Confidence            5999999999999999999999999999999999999999998833

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.23  E-value=9.4e-12  Score=114.18  Aligned_cols=50  Identities=54%  Similarity=0.956  Sum_probs=45.7

Q ss_pred             CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHHHHHHhhcCCCCCC
Q 024479            1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGG   50 (267)
Q Consensus         1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~LrKklkk~~~~~~~~   50 (267)
                      +|+++|.+||+||+.||++|||||||+|||||+.+++|++++....+..+
T Consensus        88 lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~  137 (249)
T PLN03212         88 LILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTH  137 (249)
T ss_pred             HHHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCC
Confidence            58999999999999999999999999999999999999998877666554

>PLN03091 hypothetical protein; Provisional

Probab=99.15  E-value=3.7e-11  Score=117.61  Aligned_cols=52  Identities=52%  Similarity=0.882  Sum_probs=47.1

Q ss_pred             CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 024479            1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQN   52 (267)
Q Consensus         1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~LrKklkk~~~~~~~~~~   52 (267)
                      +|+++|++||+||++||++||||||++|||||+.++||++++...++..+.+
T Consensus        77 lLLeL~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kp  128 (459)
T PLN03091         77 LIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKP  128 (459)
T ss_pred             HHHHHHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            4899999999999999999999999999999999999999988877665543

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=98.45  E-value=5.7e-08  Score=69.14  Aligned_cols=39  Identities=36%  Similarity=0.700  Sum_probs=32.7

Q ss_pred             CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHHHH
Q 024479            1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKK   39 (267)
Q Consensus         1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~LrKk   39 (267)
                      +|+++|.+||+.|..||++|+.||..+|++||+.+|+++
T Consensus         8 ~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~   46 (60)
T PF13921_consen    8 LLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPK   46 (60)
T ss_dssp             HHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCccc
Confidence            478999999999999999996699999999999866533

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.44  E-value=1.5e-07  Score=61.74  Aligned_cols=37  Identities=41%  Similarity=0.740  Sum_probs=34.0

Q ss_pred             CHHHHHHHhc-CcHHHHhccCCCCChhHHHHHHHHHHH
Q 024479            1 MIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLK   37 (267)
Q Consensus         1 LIi~L~~elG-nKWs~IAk~LPGRTDNqIKNrWnt~Lr   37 (267)
                      +|+.++.+|| ..|..||..||+||+++|++||+..++
T Consensus        11 ~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717       11 LLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             HHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            4788999999 999999999999999999999997654

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=98.43  E-value=1.5e-07  Score=65.10  Aligned_cols=36  Identities=22%  Similarity=0.470  Sum_probs=33.2

Q ss_pred             CHHHHHHHhcCc-HHHHhccCC-CCChhHHHHHHHHHH
Q 024479            1 MIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL   36 (267)
Q Consensus         1 LIi~L~~elGnK-Ws~IAk~LP-GRTDNqIKNrWnt~L   36 (267)
                      +|++++.+||.. |..||.+|| |||..+|++||+.++
T Consensus        11 ~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen   11 KLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             HHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            378999999988 999999999 999999999999764

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.34  E-value=5.2e-07  Score=58.54  Aligned_cols=35  Identities=29%  Similarity=0.615  Sum_probs=32.5

Q ss_pred             CHHHHHHHhc-CcHHHHhccCCCCChhHHHHHHHHH
Q 024479            1 MIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTH   35 (267)
Q Consensus         1 LIi~L~~elG-nKWs~IAk~LPGRTDNqIKNrWnt~   35 (267)
                      +|++++.++| .+|..||+.||+||.++|++||+.+
T Consensus         9 ~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           9 LLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             HHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            4788999999 9999999999999999999999865

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PLN03212 Transcription repressor MYB5; Provisional

Probab=97.61  E-value=3.4e-05  Score=71.43  Aligned_cols=44  Identities=16%  Similarity=0.357  Sum_probs=39.2

Q ss_pred             CHHHHHHHhc-CcHHHHhccC-CCCChhHHHHHHHHHHHHHHHhhc
Q 024479            1 MIIHLQALLG-NRWAAIASYL-PQRTDNDIKNYWNTHLKKKLKKLQ   44 (267)
Q Consensus         1 LIi~L~~elG-nKWs~IAk~L-PGRTDNqIKNrWnt~LrKklkk~~   44 (267)
                      +|++++++|| ++|..||+++ +|||+.+|+.||+.+|++.+++-.
T Consensus        35 ~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgp   80 (249)
T PLN03212         35 ILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGG   80 (249)
T ss_pred             HHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCC
Confidence            4789999999 6899999998 799999999999999998876644

>PLN03091 hypothetical protein; Provisional

Probab=97.06  E-value=0.00022  Score=70.86  Aligned_cols=43  Identities=19%  Similarity=0.357  Sum_probs=37.5

Q ss_pred             CHHHHHHHhc-CcHHHHhccC-CCCChhHHHHHHHHHHHHHHHhh
Q 024479            1 MIIHLQALLG-NRWAAIASYL-PQRTDNDIKNYWNTHLKKKLKKL   43 (267)
Q Consensus         1 LIi~L~~elG-nKWs~IAk~L-PGRTDNqIKNrWnt~LrKklkk~   43 (267)
                      +|++++.+|| ..|..||+++ +||++.+|+.||+.+|++.+++-
T Consensus        24 ~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKg   68 (459)
T PLN03091         24 KLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRG   68 (459)
T ss_pred             HHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCC
Confidence            4789999999 5699999988 59999999999999888877553

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=96.72  E-value=0.00045  Score=62.27  Aligned_cols=48  Identities=17%  Similarity=0.252  Sum_probs=42.2

Q ss_pred             CHHHHHHHhcCc-HHHHhccCC-CCChhHHHHHHHHHHHHHHHhhcCCCC
Q 024479            1 MIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHLKKKLKKLQTGSD   48 (267)
Q Consensus         1 LIi~L~~elGnK-Ws~IAk~LP-GRTDNqIKNrWnt~LrKklkk~~~~~~   48 (267)
                      +|++++++||.+ |..|++.++ ||++.+|+-||..+|++.+++-.-+.+
T Consensus        19 ~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~e   68 (238)
T KOG0048|consen   19 TQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDE   68 (238)
T ss_pred             HHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHH
Confidence            478999999955 999999999 999999999999999999987655433

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=94.42  E-value=0.033  Score=56.53  Aligned_cols=40  Identities=28%  Similarity=0.495  Sum_probs=36.8

Q ss_pred             HHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHHHHHH
Q 024479            2 IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLK   41 (267)
Q Consensus         2 Ii~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~LrKklk   41 (267)
                      |++++.++|++|..||.++||||+.+|.+||+..+.....
T Consensus        83 li~l~~~~~~~wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          83 LIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             HHHHHHhcCchhhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            7899999999999999999999999999999987776655

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=93.86  E-value=0.042  Score=56.13  Aligned_cols=41  Identities=32%  Similarity=0.545  Sum_probs=37.1

Q ss_pred             HHHHHhc-CcHHHHhccCCCCChhHHHHHHHHHHHHHHHhhc
Q 024479            4 HLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ   44 (267)
Q Consensus         4 ~L~~elG-nKWs~IAk~LPGRTDNqIKNrWnt~LrKklkk~~   44 (267)
                      -.+..|| |.|+.|++.|+..|..+||+||+.++.+.+++..
T Consensus        20 aav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~te   61 (617)
T KOG0050|consen   20 AAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTE   61 (617)
T ss_pred             HHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhh
Confidence            3578899 8899999999999999999999999999988764

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=93.79  E-value=0.057  Score=56.71  Aligned_cols=43  Identities=19%  Similarity=0.474  Sum_probs=37.7

Q ss_pred             CHHHHHHHhcCc-HHHHhccCCCCChhHHHHHHHHHHHHHHHhh
Q 024479            1 MIIHLQALLGNR-WAAIASYLPQRTDNDIKNYWNTHLKKKLKKL   43 (267)
Q Consensus         1 LIi~L~~elGnK-Ws~IAk~LPGRTDNqIKNrWnt~LrKklkk~   43 (267)
                      +|+..+++||.| |++|...+|||+|.||+.||...|...+|+-
T Consensus       370 ~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~  413 (939)
T KOG0049|consen  370 LLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVE  413 (939)
T ss_pred             HHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccC
Confidence            478889999966 9999999999999999999998887776553

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=93.43  E-value=0.033  Score=56.50  Aligned_cols=44  Identities=39%  Similarity=0.598  Sum_probs=38.6

Q ss_pred             HHHHHHHhc-CcHHHHhccCCCCChhHHHHHHHHHHHHHHHhhcC
Q 024479            2 IIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQT   45 (267)
Q Consensus         2 Ii~L~~elG-nKWs~IAk~LPGRTDNqIKNrWnt~LrKklkk~~~   45 (267)
                      +..++++|| |.|++||..|.-|+.+++++||+.++.+++++...
T Consensus        31 l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~   75 (512)
T COG5147          31 LKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNW   75 (512)
T ss_pred             HHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccc
Confidence            456789999 77999999998899999999999999988877654

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=91.56  E-value=0.43  Score=50.45  Aligned_cols=41  Identities=22%  Similarity=0.429  Sum_probs=33.4

Q ss_pred             HHHHHHHhc-CcHHHHhccCCCCChhHHHHHHHHHHHHHHHh
Q 024479            2 IIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK   42 (267)
Q Consensus         2 Ii~L~~elG-nKWs~IAk~LPGRTDNqIKNrWnt~LrKklkk   42 (267)
                      ||.++.+|| ..|.+||.+||.||..+...|-...++.+++-
T Consensus       423 L~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k~rl  464 (939)
T KOG0049|consen  423 LLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAAKLRL  464 (939)
T ss_pred             HHHHHHHHccchHHHHHHHccccchhHHHHHHHHHHHHHHHH
Confidence            688999999 77999999999999988777666566555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	267
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		9e-06
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		2e-05
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		2e-05
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		3e-05
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		3e-05
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		1e-04
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		1e-04

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 34
           +I     +LGNRWA IA  LP RTDN +KN+WN+
Sbjct: 69  IIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNS 102

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 34
           +I      LGNRWA IA  LP RTDN IKN+WN+
Sbjct: 120 IIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 153

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 1  MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 34
          +I      LGNRWA IA  LP RTDN IKN+WN+
Sbjct: 66 IIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 1  MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 34
          +I      LGNRWA IA  LP RTDN IKN+WN+
Sbjct: 66 IIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 34
           +I      LGNRWA IA  LP RTDN +KN+WN+
Sbjct: 89  IIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNS 122

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 1  MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 34
          +I      LGNRWA IA  LP RTDN IKN+WN+
Sbjct: 13 IIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 46

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/26 (73%), Positives = 21/26 (80%)
Query: 9  LGNRWAAIASYLPQRTDNDIKNYWNT 34
          LGNRWA IA  LP RTDN IKN+WN+
Sbjct: 23 LGNRWAEIAKLLPGRTDNAIKNHWNS 48

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	267
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	5e-23
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	4e-22
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	5e-21
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	5e-19
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	2e-18
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	3e-17

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score = 90.4 bits (225), Expect = 5e-23
 Identities = 17/64 (26%), Positives = 29/64 (45%)

Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDGFSST 60
            I      LG++W+ IA  +P RTDN IKN WN+ + K++       +    ++      
Sbjct: 64  TIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKKRKA 123

Query: 61  SQQA 64
           +   
Sbjct: 124 ADVP 127

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score = 87.2 bits (217), Expect = 4e-22
 Identities = 21/40 (52%), Positives = 28/40 (70%)

Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 40
           +I      LGNRWA IA  LP RTDN IKN+WN+ +++K+
Sbjct: 66  IIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score = 84.9 bits (211), Expect = 5e-21
 Identities = 20/40 (50%), Positives = 28/40 (70%)

Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 40
           +I      LGNRWA IA  LP RTDN +KN+WN+ +++K+
Sbjct: 89  IIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score = 79.6 bits (197), Expect = 5e-19
 Identities = 15/42 (35%), Positives = 20/42 (47%)

Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 42
           +++      G +WA IA + P RTD  IKN W T   K    
Sbjct: 72  LLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIP 113

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score = 77.6 bits (192), Expect = 2e-18
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQT 45
           ++    A  G +W  I+ +L  R+DN+I+N W    + + K  ++
Sbjct: 63  LLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQKS 107

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 75.8 bits (187), Expect = 3e-17
 Identities = 21/40 (52%), Positives = 28/40 (70%)

Query: 1   MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 40
           +I      LGNRWA IA  LP RTDN IKN+WN+ +++K+
Sbjct: 120 IIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	267
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.23
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.12
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.11
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.09
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.57
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	98.99
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	98.99
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	98.98
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	98.96
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	98.94
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	98.9
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	98.89
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	98.86
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	98.84
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	98.81
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	98.78
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	98.77
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	98.69
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	98.64
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	98.62
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	98.6
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.55
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.53
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	98.39
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	98.3
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	98.3
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	98.3
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	98.24
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	98.24
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	98.23
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	98.15
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.11
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	98.11
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.89
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	97.87
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	97.8
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	97.7
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	97.4
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.15
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	95.76
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	94.63
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	95.34
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	94.21
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	93.21
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	93.05
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	91.84
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	90.99
2crg_A	70	Metastasis associated protein MTA3; transcription	90.77
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	90.65
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	89.89
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	83.71

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.23  E-value=3.6e-12  Score=94.24  Aligned_cols=42  Identities=29%  Similarity=0.432  Sum_probs=39.2

Q ss_pred             CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHHHHHHh
Q 024479            1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK   42 (267)
Q Consensus         1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~LrKklkk   42 (267)
                      +|+++|.+||++|..||++|||||+++|||||+.+++++++.
T Consensus        19 ~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A           19 LFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            478999999999999999999999999999999999988655

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=3.4e-11  Score=87.39  Aligned_cols=44  Identities=23%  Similarity=0.382  Sum_probs=40.1

Q ss_pred             CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHHHHHHhhcC
Q 024479            1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQT   45 (267)
Q Consensus         1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~LrKklkk~~~   45 (267)
                      +|+++|++||++|..||+ |||||+++||+||+.+|++.+++...
T Consensus        19 ~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~   62 (66)
T 2din_A           19 KLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG   62 (66)
T ss_dssp             HHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence            478999999999999999 99999999999999999998876543

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.11  E-value=3e-11  Score=93.83  Aligned_cols=40  Identities=53%  Similarity=0.948  Sum_probs=35.6

Q ss_pred             CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHHHHH
Q 024479            1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL   40 (267)
Q Consensus         1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~LrKkl   40 (267)
                      +|+++|.+||++|+.||++|||||+++|||||+.++++++
T Consensus        66 ~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           66 IIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHHhccC
Confidence            4789999999999999999999999999999999998864

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.09  E-value=4e-11  Score=94.05  Aligned_cols=43  Identities=28%  Similarity=0.587  Sum_probs=39.2

Q ss_pred             CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHHHHHHhh
Q 024479            1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKL   43 (267)
Q Consensus         1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~LrKklkk~   43 (267)
                      +|+++|.+||++|+.||++|||||+++|||||+.++++..+..
T Consensus        63 ~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~~~  105 (107)
T 2k9n_A           63 LLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQ  105 (107)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred             HHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhHHHhh
Confidence            4889999999999999999999999999999999998876543

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.57  E-value=3.4e-11  Score=92.97  Aligned_cols=39  Identities=23%  Similarity=0.311  Sum_probs=36.8

Q ss_pred             CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHHHH
Q 024479            1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKK   39 (267)
Q Consensus         1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~LrKk   39 (267)
                      +|+++|.+||++|..||.+|||||+++|||||+.++++.
T Consensus        26 ~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A           26 TAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            588999999999999999999999999999999998865

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=98.99  E-value=1.5e-10  Score=93.69  Aligned_cols=44  Identities=39%  Similarity=0.723  Sum_probs=40.0

Q ss_pred             CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHHHHHHhhc
Q 024479            1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ   44 (267)
Q Consensus         1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~LrKklkk~~   44 (267)
                      +|+++|.+||++|+.||++|||||+++|||||+.++++++....
T Consensus        64 ~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~  107 (131)
T 3zqc_A           64 TIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNS  107 (131)
T ss_dssp             HHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred             HHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence            47899999999999999999999999999999999998865444

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=98.99  E-value=1.9e-10  Score=79.53  Aligned_cols=38  Identities=34%  Similarity=0.645  Sum_probs=35.2

Q ss_pred             CHHHHHHHhcC-cHHHHhccCCCCChhHHHHHHHHHHHH
Q 024479            1 MIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLKK   38 (267)
Q Consensus         1 LIi~L~~elGn-KWs~IAk~LPGRTDNqIKNrWnt~LrK   38 (267)
                      +|++++.+||+ +|..||++|||||+++|++||+.+|++
T Consensus        13 ~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A           13 KLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             HHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999998 999999999999999999999998864

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=98.98  E-value=9.2e-11  Score=88.55  Aligned_cols=34  Identities=26%  Similarity=0.440  Sum_probs=31.9

Q ss_pred             CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHH
Q 024479            1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH   35 (267)
Q Consensus         1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~   35 (267)
                      +|+++|++||++|+.||++| |||+++|||||+.+
T Consensus        33 ~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L   66 (73)
T 2llk_A           33 KLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM   66 (73)
T ss_dssp             HHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence            48999999999999999999 99999999999954

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=98.96  E-value=8.8e-11  Score=83.59  Aligned_cols=40  Identities=28%  Similarity=0.458  Sum_probs=36.4

Q ss_pred             CHHHHHHHhc-CcHHHHhccCCCCChhHHHHHHHHHHHHHH
Q 024479            1 MIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKKL   40 (267)
Q Consensus         1 LIi~L~~elG-nKWs~IAk~LPGRTDNqIKNrWnt~LrKkl   40 (267)
                      +|+++|.+|| ++|..||++|||||+++||+||+.+|++.+
T Consensus        18 ~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i   58 (60)
T 2d9a_A           18 QLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS   58 (60)
T ss_dssp             HHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred             HHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence            4789999999 699999999999999999999999887653

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=98.94  E-value=2.9e-10  Score=83.19  Aligned_cols=43  Identities=26%  Similarity=0.288  Sum_probs=39.1

Q ss_pred             CHHHHHHHhc-CcHHHHhccCC--CCChhHHHHHHHHHHHHHHHhh
Q 024479            1 MIIHLQALLG-NRWAAIASYLP--QRTDNDIKNYWNTHLKKKLKKL   43 (267)
Q Consensus         1 LIi~L~~elG-nKWs~IAk~LP--GRTDNqIKNrWnt~LrKklkk~   43 (267)
                      +|+++|.+|| ++|..||.+||  |||+++||+||+.+|++.+.+.
T Consensus        20 ~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~   65 (69)
T 1ity_A           20 NLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS   65 (69)
T ss_dssp             HHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred             HHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence            4789999999 79999999999  9999999999999999886543

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=98.90  E-value=8.4e-10  Score=88.91  Aligned_cols=39  Identities=38%  Similarity=0.668  Sum_probs=36.3

Q ss_pred             CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHHHH
Q 024479            1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKK   39 (267)
Q Consensus         1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~LrKk   39 (267)
                      +|+++|.+||++|+.||++|||||+++|||||+.++++.
T Consensus        72 ~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           72 LLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             HHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            478999999999999999999999999999999888764

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=98.89  E-value=5.3e-10  Score=77.48  Aligned_cols=38  Identities=32%  Similarity=0.624  Sum_probs=34.5

Q ss_pred             CHHHHHHHhcC-cHHHHhccCCCCChhHHHHHHHHHHHH
Q 024479            1 MIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLKK   38 (267)
Q Consensus         1 LIi~L~~elGn-KWs~IAk~LPGRTDNqIKNrWnt~LrK   38 (267)
                      +|++++.+||+ +|..||++|||||+++||+||+.+|++
T Consensus        13 ~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A           13 RLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             HHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999997 599999999999999999999988753

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=98.86  E-value=1.1e-09  Score=76.45  Aligned_cols=38  Identities=24%  Similarity=0.298  Sum_probs=35.3

Q ss_pred             CHHHHHHHhc-CcHHHHhccCC--CCChhHHHHHHHHHHHH
Q 024479            1 MIIHLQALLG-NRWAAIASYLP--QRTDNDIKNYWNTHLKK   38 (267)
Q Consensus         1 LIi~L~~elG-nKWs~IAk~LP--GRTDNqIKNrWnt~LrK   38 (267)
                      +|+++|.+|| ++|..||.+||  |||+++|++||+.+++.
T Consensus        12 ~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A           12 NLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            4789999999 79999999999  99999999999998875

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=4.3e-10  Score=82.39  Aligned_cols=42  Identities=29%  Similarity=0.534  Sum_probs=38.3

Q ss_pred             CHHHHHHHhc-CcHHHHhccCCCCChhHHHHHHHHHHHHHHHh
Q 024479            1 MIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK   42 (267)
Q Consensus         1 LIi~L~~elG-nKWs~IAk~LPGRTDNqIKNrWnt~LrKklkk   42 (267)
                      +|+++|.+|| ++|..||.+|||||+++|++||+.+|++.+++
T Consensus        19 ~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~   61 (70)
T 2dim_A           19 ILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK   61 (70)
T ss_dssp             HHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCC
T ss_pred             HHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccC
Confidence            4789999999 89999999999999999999999999877554

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=98.81  E-value=1.8e-09  Score=77.35  Aligned_cols=37  Identities=11%  Similarity=0.287  Sum_probs=34.5

Q ss_pred             CHHHHHHHhc-CcHHHHhccCCCCChhHHHHHHHHHHH
Q 024479            1 MIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLK   37 (267)
Q Consensus         1 LIi~L~~elG-nKWs~IAk~LPGRTDNqIKNrWnt~Lr   37 (267)
                      +|++++.+|| ++|..||++|||||+++|++||+.+|.
T Consensus        18 ~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A           18 ALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             HHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence            4789999999 899999999999999999999998775

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=98.78  E-value=1.4e-09  Score=98.63  Aligned_cols=42  Identities=26%  Similarity=0.493  Sum_probs=39.0

Q ss_pred             CHHHHHHHhcCc------HHHHhccCCCCChhHHHHHHHHHHHHHHHh
Q 024479            1 MIIHLQALLGNR------WAAIASYLPQRTDNDIKNYWNTHLKKKLKK   42 (267)
Q Consensus         1 LIi~L~~elGnK------Ws~IAk~LPGRTDNqIKNrWnt~LrKklkk   42 (267)
                      +|+++|.++|++      |..||++|||||+|+|||||+.+|++++..
T Consensus        18 ~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~   65 (246)
T 1ign_A           18 FILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEY   65 (246)
T ss_dssp             HHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCC
T ss_pred             HHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhccc
Confidence            489999999986      999999999999999999999999998753

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.77  E-value=1.7e-09  Score=80.04  Aligned_cols=42  Identities=24%  Similarity=0.261  Sum_probs=37.6

Q ss_pred             CHHHHHHHhc------CcHHHHhccCCCCChhHHHHHHHHHHHHHHHh
Q 024479            1 MIIHLQALLG------NRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK   42 (267)
Q Consensus         1 LIi~L~~elG------nKWs~IAk~LPGRTDNqIKNrWnt~LrKklkk   42 (267)
                      +|++++.+||      ++|..||.+|||||+++|++||+.+|++.++.
T Consensus        18 ~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~   65 (75)
T 2yum_A           18 KLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA   65 (75)
T ss_dssp             HHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred             HHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence            4789999999      79999999999999999999999888876543

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.69  E-value=6.1e-09  Score=78.47  Aligned_cols=37  Identities=14%  Similarity=0.292  Sum_probs=33.6

Q ss_pred             CHHHHHHHhc----CcHHHHhccCCCCChhHHHHHHHHHHH
Q 024479            1 MIIHLQALLG----NRWAAIASYLPQRTDNDIKNYWNTHLK   37 (267)
Q Consensus         1 LIi~L~~elG----nKWs~IAk~LPGRTDNqIKNrWnt~Lr   37 (267)
                      +|++++++||    ++|.+||++|||||+++||+||+.+++
T Consensus        28 ~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           28 LLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             HHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            4788999999    899999999999999999999997653

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=98.64  E-value=2.3e-08  Score=76.99  Aligned_cols=40  Identities=25%  Similarity=0.480  Sum_probs=36.3

Q ss_pred             CHHHHHHHhcC-cHHHHhcc----CCCCChhHHHHHHHHHHHHHH
Q 024479            1 MIIHLQALLGN-RWAAIASY----LPQRTDNDIKNYWNTHLKKKL   40 (267)
Q Consensus         1 LIi~L~~elGn-KWs~IAk~----LPGRTDNqIKNrWnt~LrKkl   40 (267)
                      +|+++|++||+ +|+.|++.    |+|||+++||+||++++++.-
T Consensus        10 ~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A           10 ALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             HHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            37899999998 99999995    899999999999999988663

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=98.62  E-value=1.5e-08  Score=74.02  Aligned_cols=39  Identities=31%  Similarity=0.444  Sum_probs=34.8

Q ss_pred             CHHHHHHHhc-CcHHHHhccCC--CCChhHHHHHHHHHHHHH
Q 024479            1 MIIHLQALLG-NRWAAIASYLP--QRTDNDIKNYWNTHLKKK   39 (267)
Q Consensus         1 LIi~L~~elG-nKWs~IAk~LP--GRTDNqIKNrWnt~LrKk   39 (267)
                      +|++++.+|| .+|..||+++|  |||+.+||+||+.++|..
T Consensus        21 ~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g   62 (64)
T 3sjm_A           21 WVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   62 (64)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence            3789999999 58999999876  999999999999988754

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=98.60  E-value=1.9e-08  Score=71.69  Aligned_cols=36  Identities=28%  Similarity=0.567  Sum_probs=33.1

Q ss_pred             CHHHHHHHhc-CcHHHHhccCC-CCChhHHHHHHHHHH
Q 024479            1 MIIHLQALLG-NRWAAIASYLP-QRTDNDIKNYWNTHL   36 (267)
Q Consensus         1 LIi~L~~elG-nKWs~IAk~LP-GRTDNqIKNrWnt~L   36 (267)
                      +|++++++|| ++|..||++|| |||+++|++||+.+.
T Consensus        19 ~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A           19 LLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             HHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            4789999999 89999999999 999999999998653

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.55  E-value=4.7e-08  Score=72.32  Aligned_cols=37  Identities=19%  Similarity=0.445  Sum_probs=34.4

Q ss_pred             HHHHHHHhcCcHHHHh---ccCCCCChhHHHHHHHHHHHH
Q 024479            2 IIHLQALLGNRWAAIA---SYLPQRTDNDIKNYWNTHLKK   38 (267)
Q Consensus         2 Ii~L~~elGnKWs~IA---k~LPGRTDNqIKNrWnt~LrK   38 (267)
                      |+++|++||.+|..|+   .+|+|||+.+||++|+.++|+
T Consensus        19 L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A           19 LFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             HHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            7899999999999999   689999999999999987764

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.53  E-value=6.4e-08  Score=75.99  Aligned_cols=39  Identities=21%  Similarity=0.388  Sum_probs=34.5

Q ss_pred             CHHHHHHHhc----CcHHHHhccCCCCChhHHHHHHHHHHHHH
Q 024479            1 MIIHLQALLG----NRWAAIASYLPQRTDNDIKNYWNTHLKKK   39 (267)
Q Consensus         1 LIi~L~~elG----nKWs~IAk~LPGRTDNqIKNrWnt~LrKk   39 (267)
                      +|++++.+||    ++|.+||++|||||+++||+||+.+++..
T Consensus        18 ~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A           18 AFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             HHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            3678899995    89999999999999999999999877653

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=98.39  E-value=2e-07  Score=76.59  Aligned_cols=39  Identities=26%  Similarity=0.510  Sum_probs=35.6

Q ss_pred             CHHHHHHHhcC-cHHHHhcc----CCCCChhHHHHHHHHHHHHH
Q 024479            1 MIIHLQALLGN-RWAAIASY----LPQRTDNDIKNYWNTHLKKK   39 (267)
Q Consensus         1 LIi~L~~elGn-KWs~IAk~----LPGRTDNqIKNrWnt~LrKk   39 (267)
                      +|+++|++||+ +|+.|++.    |+|||+++||+||+.++++.
T Consensus        27 ~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~   70 (121)
T 2juh_A           27 ALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   70 (121)
T ss_dssp             HHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence            37899999998 99999998    49999999999999999864

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=98.30  E-value=5.3e-07  Score=72.32  Aligned_cols=39  Identities=26%  Similarity=0.520  Sum_probs=35.2

Q ss_pred             CHHHHHHHhcC-cHHHHhccC----CCCChhHHHHHHHHHHHHH
Q 024479            1 MIIHLQALLGN-RWAAIASYL----PQRTDNDIKNYWNTHLKKK   39 (267)
Q Consensus         1 LIi~L~~elGn-KWs~IAk~L----PGRTDNqIKNrWnt~LrKk   39 (267)
                      +|++.|++||+ +|+.|++.+    +|||+++||++|+.++++.
T Consensus        23 ~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~   66 (105)
T 2aje_A           23 ALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA   66 (105)
T ss_dssp             HHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            37899999998 999999965    9999999999999988765

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=98.30  E-value=1.3e-07  Score=78.29  Aligned_cols=38  Identities=32%  Similarity=0.627  Sum_probs=34.4

Q ss_pred             CHHHHHHHhcC-cHHHHhccCCCCChhHHHHHHHHHHHH
Q 024479            1 MIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLKK   38 (267)
Q Consensus         1 LIi~L~~elGn-KWs~IAk~LPGRTDNqIKNrWnt~LrK   38 (267)
                      +|+++|.+||+ +|..||.+|||||+++|++||+.+|.+
T Consensus        68 ~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p  106 (159)
T 1h89_C           68 RVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP  106 (159)
T ss_dssp             HHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence            37899999996 699999999999999999999987754

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=98.30  E-value=2e-07  Score=70.80  Aligned_cols=35  Identities=9%  Similarity=0.276  Sum_probs=32.4

Q ss_pred             CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHH
Q 024479            1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH   35 (267)
Q Consensus         1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~   35 (267)
                      +|++++.+||++|..||++|++||+.+|++||+.+
T Consensus        28 ~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           28 LLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             HHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             HHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            47899999999999999999999999999999744

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=98.24  E-value=1.8e-07  Score=75.06  Aligned_cols=38  Identities=29%  Similarity=0.570  Sum_probs=34.2

Q ss_pred             CHHHHHHHhcC-cHHHHhccCCCCChhHHHHHHHHHHHH
Q 024479            1 MIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLKK   38 (267)
Q Consensus         1 LIi~L~~elGn-KWs~IAk~LPGRTDNqIKNrWnt~LrK   38 (267)
                      +|++++.+||. +|..||.+|||||+++|++||+.+|.+
T Consensus        37 ~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p   75 (128)
T 1h8a_C           37 RVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNP   75 (128)
T ss_dssp             HHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccc
Confidence            37899999996 699999999999999999999987753

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=98.24  E-value=2.8e-07  Score=74.16  Aligned_cols=39  Identities=26%  Similarity=0.535  Sum_probs=35.7

Q ss_pred             CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHHHH
Q 024479            1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKK   39 (267)
Q Consensus         1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~LrKk   39 (267)
                      +|++++.+||.+|..||.+|||||+.+|+.||+.+|.+.
T Consensus        21 ~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~   59 (126)
T 3osg_A           21 MLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPS   59 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccc
Confidence            478999999999999999999999999999999887544

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=98.23  E-value=2.2e-07  Score=71.96  Aligned_cols=37  Identities=32%  Similarity=0.649  Sum_probs=33.7

Q ss_pred             CHHHHHHHhcC-cHHHHhccCCCCChhHHHHHHHHHHH
Q 024479            1 MIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLK   37 (267)
Q Consensus         1 LIi~L~~elGn-KWs~IAk~LPGRTDNqIKNrWnt~Lr   37 (267)
                      +|++++.+||. +|..||.+|||||+.+|+.||+.+|.
T Consensus        14 ~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~   51 (105)
T 1gv2_A           14 RVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN   51 (105)
T ss_dssp             HHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccC
Confidence            47899999997 69999999999999999999998764

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=98.15  E-value=1.4e-06  Score=71.60  Aligned_cols=39  Identities=26%  Similarity=0.550  Sum_probs=35.3

Q ss_pred             CHHHHHHHhcC-cHHHHhcc----CCCCChhHHHHHHHHHHHHH
Q 024479            1 MIIHLQALLGN-RWAAIASY----LPQRTDNDIKNYWNTHLKKK   39 (267)
Q Consensus         1 LIi~L~~elGn-KWs~IAk~----LPGRTDNqIKNrWnt~LrKk   39 (267)
                      .|+++|++||. +|+.|++.    |+|||+++||+||++++++.
T Consensus        41 ~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~   84 (122)
T 2roh_A           41 LLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA   84 (122)
T ss_dssp             HHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            37899999997 99999996    49999999999999998765

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.11  E-value=1.1e-06  Score=63.29  Aligned_cols=37  Identities=22%  Similarity=0.235  Sum_probs=33.2

Q ss_pred             CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHH
Q 024479            1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLK   37 (267)
Q Consensus         1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~Lr   37 (267)
                      ++++++.+||.+|..||.+|||||..+|++||+...+
T Consensus        22 ~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A           22 IFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             HHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            3678999999999999999999999999999997543

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=98.11  E-value=6.6e-07  Score=69.97  Aligned_cols=39  Identities=18%  Similarity=0.428  Sum_probs=35.0

Q ss_pred             CHHHHHHHhcC-cHHHHhccCCCCChhHHHHHHHHHHHHH
Q 024479            1 MIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLKKK   39 (267)
Q Consensus         1 LIi~L~~elGn-KWs~IAk~LPGRTDNqIKNrWnt~LrKk   39 (267)
                      +|++++.+||. +|..||.+|||||+.+|+.||+.+|.+.
T Consensus        11 ~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~   50 (107)
T 2k9n_A           11 KLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPA   50 (107)
T ss_dssp             HHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHccc
Confidence            47899999996 8999999999999999999999887643

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.89  E-value=1.5e-05  Score=62.94  Aligned_cols=43  Identities=16%  Similarity=0.195  Sum_probs=38.8

Q ss_pred             HHHHHHHhcCcHHHHhccC-----CCCChhHHHHHHHHHHHHHHHhhc
Q 024479            2 IIHLQALLGNRWAAIASYL-----PQRTDNDIKNYWNTHLKKKLKKLQ   44 (267)
Q Consensus         2 Ii~L~~elGnKWs~IAk~L-----PGRTDNqIKNrWnt~LrKklkk~~   44 (267)
                      |++|+++||-||..|+.++     ++||..+||+||+...++.++...
T Consensus        41 Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~   88 (93)
T 3hm5_A           41 LFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             HHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            7899999999999999999     589999999999999887766553

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=97.87  E-value=1.8e-06  Score=69.62  Aligned_cols=39  Identities=28%  Similarity=0.614  Sum_probs=35.2

Q ss_pred             CHHHHHHHhc-CcHHHHhccCCCCChhHHHHHHHHHHHHH
Q 024479            1 MIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKK   39 (267)
Q Consensus         1 LIi~L~~elG-nKWs~IAk~LPGRTDNqIKNrWnt~LrKk   39 (267)
                      +|++++.+|| ..|..||.+|||||+.+|+.||+.+|.+.
T Consensus        12 ~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~   51 (131)
T 3zqc_A           12 LIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPA   51 (131)
T ss_dssp             HHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCcc
Confidence            3789999999 67999999999999999999999888644

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=97.80  E-value=5.6e-06  Score=74.69  Aligned_cols=38  Identities=13%  Similarity=0.329  Sum_probs=34.3

Q ss_pred             CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHHH
Q 024479            1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK   38 (267)
Q Consensus         1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~LrK   38 (267)
                      ++++.+.+||+.|..||++|++||+++|||+|+.+.+|
T Consensus       143 lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          143 LAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            36788999999999999999999999999999976654

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=97.70  E-value=1.8e-05  Score=59.31  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=32.2

Q ss_pred             CHHHHHHHhc----CcHHHHhccCCCCChhHHHHHHHHHHHH
Q 024479            1 MIIHLQALLG----NRWAAIASYLPQRTDNDIKNYWNTHLKK   38 (267)
Q Consensus         1 LIi~L~~elG----nKWs~IAk~LPGRTDNqIKNrWnt~LrK   38 (267)
                      +|.+++++|+    +||.+||.+| |||.++|++||+.+++.
T Consensus        18 ~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A           18 QLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             HHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            3678899997    8999999998 99999999999977554

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=97.40  E-value=1e-05  Score=66.89  Aligned_cols=38  Identities=34%  Similarity=0.660  Sum_probs=10.2

Q ss_pred             CHHHHHHHhc-CcHHHHhccCCCCChhHHHHHHHHHHHH
Q 024479            1 MIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKK   38 (267)
Q Consensus         1 LIi~L~~elG-nKWs~IAk~LPGRTDNqIKNrWnt~LrK   38 (267)
                      +|++++.+|| .+|..||.+|||||..+|+.||..+|.+
T Consensus        16 ~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p   54 (159)
T 1h89_C           16 KLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   54 (159)
T ss_dssp             ---------------------------CHHHHHHTTTCT
T ss_pred             HHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCC
Confidence            4788999999 5899999999999999999999987754

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.15  E-value=0.0042  Score=49.28  Aligned_cols=36  Identities=14%  Similarity=0.313  Sum_probs=33.1

Q ss_pred             HHHHHHHhcC---cHHHHhccCCCCChhHHHHHHHHHHH
Q 024479            2 IIHLQALLGN---RWAAIASYLPQRTDNDIKNYWNTHLK   37 (267)
Q Consensus         2 Ii~L~~elGn---KWs~IAk~LPGRTDNqIKNrWnt~Lr   37 (267)
                      |+..+++-|.   .|+.||+.|.+|+.|+|+|||+.+++
T Consensus        44 IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~   82 (95)
T 1ug2_A           44 ILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             HHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            7888899997   79999999999999999999998775

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=95.76  E-value=0.0037  Score=47.21  Aligned_cols=34  Identities=15%  Similarity=0.209  Sum_probs=28.0

Q ss_pred             HHHHHHhc----CcHHHHhccCCCCChhHHHHHHHHHH
Q 024479            3 IHLQALLG----NRWAAIASYLPQRTDNDIKNYWNTHL   36 (267)
Q Consensus         3 i~L~~elG----nKWs~IAk~LPGRTDNqIKNrWnt~L   36 (267)
                      .+....|+    .+|..||.++||||..+|+.||..++
T Consensus        20 e~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~   57 (73)
T 1wgx_A           20 HCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP   57 (73)
T ss_dssp             HHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred             HHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            34455666    57999999999999999999998663

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=94.63  E-value=0.0019  Score=48.75  Aligned_cols=36  Identities=19%  Similarity=0.308  Sum_probs=31.6

Q ss_pred             CHHHHHHHhcC---cHHHHhccCCCCChhHHHHHHHHHHH
Q 024479            1 MIIHLQALLGN---RWAAIASYLPQRTDNDIKNYWNTHLK   37 (267)
Q Consensus         1 LIi~L~~elGn---KWs~IAk~LPGRTDNqIKNrWnt~Lr   37 (267)
                      .|+..+++-|.   .|+.||..| +|+.++|+|||..+++
T Consensus        24 ~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           24 VILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            36778889998   799999999 9999999999997654

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=95.34  E-value=0.023  Score=44.79  Aligned_cols=42  Identities=17%  Similarity=0.200  Sum_probs=36.9

Q ss_pred             HHHHHHHhcCcHHHHhccCC-----CCChhHHHHHHHHHHHHHHHhh
Q 024479            2 IIHLQALLGNRWAAIASYLP-----QRTDNDIKNYWNTHLKKKLKKL   43 (267)
Q Consensus         2 Ii~L~~elGnKWs~IAk~LP-----GRTDNqIKNrWnt~LrKklkk~   43 (267)
                      |++|..+|+=||..|+.++.     .||..++|+||+...++.++..
T Consensus        41 LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r   87 (93)
T 4iej_A           41 LFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             HHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            78999999999999999874     7999999999999888766543

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=94.21  E-value=0.03  Score=40.15  Aligned_cols=36  Identities=28%  Similarity=0.470  Sum_probs=31.6

Q ss_pred             HHHHHHHh--------cCc-HHHHhc-cCCCCChhHHHHHHHHHHH
Q 024479            2 IIHLQALL--------GNR-WAAIAS-YLPQRTDNDIKNYWNTHLK   37 (267)
Q Consensus         2 Ii~L~~el--------GnK-Ws~IAk-~LPGRTDNqIKNrWnt~Lr   37 (267)
                      |++.+.++        ||+ |..|+. .+|+||-...++||..+|+
T Consensus        13 L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A           13 ILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             HHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             HHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            67788888        877 999999 7999999999999987663

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=93.21  E-value=0.075  Score=41.20  Aligned_cols=34  Identities=18%  Similarity=0.188  Sum_probs=30.5

Q ss_pred             HHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHH
Q 024479            2 IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH   35 (267)
Q Consensus         2 Ii~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~   35 (267)
                      ..+.+.+||..|.+|+.+||+||..+|-.+++..
T Consensus        54 F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           54 FREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             HHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence            3567899999999999999999999999998854

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.05  E-value=0.11  Score=37.25  Aligned_cols=33  Identities=12%  Similarity=0.322  Sum_probs=29.4

Q ss_pred             HHHHHHhcCcHHHHhc-cCCCCChhHHHHHHHHH
Q 024479            3 IHLQALLGNRWAAIAS-YLPQRTDNDIKNYWNTH   35 (267)
Q Consensus         3 i~L~~elGnKWs~IAk-~LPGRTDNqIKNrWnt~   35 (267)
                      .+.+.+||..|..|++ +||.||-.+|..+|+..
T Consensus        21 e~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A           21 VKGLRQYGKNFFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             HHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence            4678999999999999 69999999999999854

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=91.84  E-value=0.088  Score=47.87  Aligned_cols=28  Identities=14%  Similarity=0.147  Sum_probs=25.7

Q ss_pred             cHHHHhccCCCCChhHHHHHHHHHHHHH
Q 024479           12 RWAAIASYLPQRTDNDIKNYWNTHLKKK   39 (267)
Q Consensus        12 KWs~IAk~LPGRTDNqIKNrWnt~LrKk   39 (267)
                      .|..||+++|+||++.+|+||+..|++.
T Consensus       173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          173 FFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence            7999999999999999999999877654

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=90.99  E-value=0.033  Score=42.43  Aligned_cols=23  Identities=30%  Similarity=0.782  Sum_probs=21.4

Q ss_pred             CcHHHHhccCCCCChhHHHHHHH
Q 024479           11 NRWAAIASYLPQRTDNDIKNYWN   33 (267)
Q Consensus        11 nKWs~IAk~LPGRTDNqIKNrWn   33 (267)
                      .||.+||..+||||..+|+.++.
T Consensus        44 dRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           44 DRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             SSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             cHHHHHHHHcCCCCHHHHHHHHH
Confidence            48999999999999999999875

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=90.77  E-value=0.21  Score=36.62  Aligned_cols=32  Identities=19%  Similarity=0.360  Sum_probs=28.9

Q ss_pred             HHHHHHhcCcHHHHhc-cCCCCChhHHHHHHHH
Q 024479            3 IHLQALLGNRWAAIAS-YLPQRTDNDIKNYWNT   34 (267)
Q Consensus         3 i~L~~elGnKWs~IAk-~LPGRTDNqIKNrWnt   34 (267)
                      .+.+.+||..|..|++ +||+||-.+|..+++.
T Consensus        20 e~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A           20 EEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             HHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             HHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            4567899999999999 6999999999999984

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=90.65  E-value=0.021  Score=45.44  Aligned_cols=25  Identities=24%  Similarity=0.510  Sum_probs=2.1

Q ss_pred             HhccCCCCChhHHHHHHHHHHHHHH
Q 024479           16 IASYLPQRTDNDIKNYWNTHLKKKL   40 (267)
Q Consensus        16 IAk~LPGRTDNqIKNrWnt~LrKkl   40 (267)
                      ||+.|||||..+|+.||..+|.+.+
T Consensus         1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~   25 (128)
T 1h8a_C            1 MEAVIKNRTDVQCQHRWQKVLNPEL   25 (128)
T ss_dssp             ---------------------CTTC
T ss_pred             CccccCCCCHHHHHHHHHHhhCCCC
Confidence            8999999999999999998876543

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=89.89  E-value=0.11  Score=51.00  Aligned_cols=33  Identities=15%  Similarity=0.341  Sum_probs=30.2

Q ss_pred             HHHHHHHhcCcHHHHhccCCCCChhHHHHHHHH
Q 024479            2 IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT   34 (267)
Q Consensus         2 Ii~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt   34 (267)
                      .++.+.+||..|..||..+..||..+||++|..
T Consensus       391 f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~  423 (482)
T 2xag_B          391 AVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN  423 (482)
T ss_dssp             HHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence            467789999999999999999999999999864

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=83.71  E-value=0.46  Score=35.26  Aligned_cols=32  Identities=28%  Similarity=0.561  Sum_probs=25.1

Q ss_pred             cHHHHhccCC----CCChhHHHHHHHHHHHHHHHhhc
Q 024479           12 RWAAIASYLP----QRTDNDIKNYWNTHLKKKLKKLQ   44 (267)
Q Consensus        12 KWs~IAk~LP----GRTDNqIKNrWnt~LrKklkk~~   44 (267)
                      .|..||..|.    .||..+|+++|+.+.+ ..++..
T Consensus        35 ~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k-~Yk~~k   70 (86)
T 2ebi_A           35 LWEQISSKMREKGFDRSPDMCTDKWRNLLK-EFKKAK   70 (86)
T ss_dssp             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHCSCS
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-HHHHHH
Confidence            5999999863    7999999999997655 454443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	267
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	4e-10
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	7e-09
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	3e-08
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	3e-08
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	5e-08
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-05
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-05
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	1e-04
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	0.003

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (124), Expect = 4e-10
 Identities = 20/37 (54%), Positives = 25/37 (67%)

Query: 1  MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLK 37
          +I      LGNRWA IA  LP RTDN IKN+WN+ ++
Sbjct: 11 IIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (117), Expect = 7e-09
 Identities = 7/38 (18%), Positives = 13/38 (34%)

Query: 1  MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 38
                      +  IAS+L ++T  +   Y+    K 
Sbjct: 27 TFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (113), Expect = 3e-08
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 1  MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 42
          +     A  G RW  I+  +  RT   +K+Y   + K K+K 
Sbjct: 12 LFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 53

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (113), Expect = 3e-08
 Identities = 5/44 (11%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 1  MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK-KLKKL 43
          + +      G  + AI+  +  ++   +KN++  + ++  + ++
Sbjct: 15 LAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEV 58

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (112), Expect = 5e-08
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 6/57 (10%)

Query: 1  MIIHLQALLGNR------WAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQ 51
           I+ +      R      +  I+ Y+P  T N I++ +  +L K+L+ +      G+
Sbjct: 11 FILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGK 67

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.4 bits (92), Expect = 1e-05
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 1  MIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLK 37
           +  L    G + W  IA+YLP RTD   ++ W   L 
Sbjct: 11 KLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 1  MIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLK 37
           +I L    G  RW+ IA +L  R     +  W+ HL 
Sbjct: 13 RLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 36.8 bits (85), Expect = 1e-04
 Identities = 10/36 (27%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 11 NRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTG 46
          +RWA +A  +  RT  ++K ++   L + +K +++G
Sbjct: 25 DRWANVARAVEGRTPEEVKKHYE-ILVEDIKYIESG 59

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (75), Expect = 0.003
 Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)

Query: 1  MIIHLQALLG-NRWAAIASY--LPQRTDNDIKNYWNTHLKKKL 40
           +       G   WAAI+       RT   IK+ W T  +  +
Sbjct: 12 WVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	267
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.37
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.86
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	98.85
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.84
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	98.83
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	98.48
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	98.45
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	98.45
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.41
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	98.36
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.26
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.26
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.25
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	98.19
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	95.05
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	91.46
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	80.97

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=9.6e-14  Score=94.91  Aligned_cols=37  Identities=54%  Similarity=0.955  Sum_probs=35.0

Q ss_pred             CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHH
Q 024479            1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLK   37 (267)
Q Consensus         1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~Lr   37 (267)
                      +|+++|++||++|+.||++|||||+++|||||+.++|
T Consensus        11 ~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2          11 IIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             HHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            4899999999999999999999999999999998874

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=3.3e-10  Score=78.25  Aligned_cols=38  Identities=32%  Similarity=0.639  Sum_probs=34.7

Q ss_pred             CHHHHHHHhc-CcHHHHhccCCCCChhHHHHHHHHHHHH
Q 024479            1 MIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKK   38 (267)
Q Consensus         1 LIi~L~~elG-nKWs~IAk~LPGRTDNqIKNrWnt~LrK   38 (267)
                      +|++++.+|| .+|..||++|||||+++|++||+.+|++
T Consensus        13 ~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_          13 RLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             HHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            4789999999 5799999999999999999999988754

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=7.4e-10  Score=78.33  Aligned_cols=41  Identities=29%  Similarity=0.465  Sum_probs=37.4

Q ss_pred             CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHHHHHH
Q 024479            1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLK   41 (267)
Q Consensus         1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~LrKklk   41 (267)
                      +|++++.+||.+|..||.+|||||+.+||+||+..+++..+
T Consensus        12 ~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k   52 (65)
T d2cu7a1          12 LFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK   52 (65)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence            47899999999999999999999999999999988877643

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=5.3e-10  Score=76.34  Aligned_cols=38  Identities=34%  Similarity=0.660  Sum_probs=34.7

Q ss_pred             CHHHHHHHhc-CcHHHHhccCCCCChhHHHHHHHHHHHH
Q 024479            1 MIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKK   38 (267)
Q Consensus         1 LIi~L~~elG-nKWs~IAk~LPGRTDNqIKNrWnt~LrK   38 (267)
                      +|++++.+|| ++|..||++|||||+.+|++||+.+|.+
T Consensus        11 ~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_          11 KLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             HHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            4789999999 5799999999999999999999998754

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=3.4e-10  Score=85.82  Aligned_cols=46  Identities=24%  Similarity=0.426  Sum_probs=41.4

Q ss_pred             CHHHHHHHhcCc------HHHHhccCCCCChhHHHHHHHHHHHHHHHhhcCC
Q 024479            1 MIIHLQALLGNR------WAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTG   46 (267)
Q Consensus         1 LIi~L~~elGnK------Ws~IAk~LPGRTDNqIKNrWnt~LrKklkk~~~~   46 (267)
                      +|++++.+||++      |..||++|||||+++||+||+.+|.+.+++..-.
T Consensus        11 ~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t   62 (86)
T d1igna1          11 FILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEV   62 (86)
T ss_dssp             HHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECB
T ss_pred             HHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCC
Confidence            488999999986      9999999999999999999999999998775443

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=98.48  E-value=5e-08  Score=68.94  Aligned_cols=43  Identities=23%  Similarity=0.441  Sum_probs=35.5

Q ss_pred             CHHHHHHHhcC----cHHHHhccCCCCChhHHHHHHHHHHHHHHHhhc
Q 024479            1 MIIHLQALLGN----RWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ   44 (267)
Q Consensus         1 LIi~L~~elGn----KWs~IAk~LPGRTDNqIKNrWnt~LrKklkk~~   44 (267)
                      +|++++++||.    +|.+||.+|||||+++|++||+. |.+.++...
T Consensus        11 ~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~-L~~dik~ie   57 (63)
T d2cjja1          11 AFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEI-LVEDIKYIE   57 (63)
T ss_dssp             HHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHH-HHHHhhccc
Confidence            47889999995    69999999999999999999965 445565543

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=6.2e-08  Score=66.47  Aligned_cols=36  Identities=22%  Similarity=0.309  Sum_probs=31.7

Q ss_pred             CHHHHHHHhcC-cHHHHhccCC--CCChhHHHHHHHHHH
Q 024479            1 MIIHLQALLGN-RWAAIASYLP--QRTDNDIKNYWNTHL   36 (267)
Q Consensus         1 LIi~L~~elGn-KWs~IAk~LP--GRTDNqIKNrWnt~L   36 (267)
                      +|++++.+||. +|..|+..+|  |||+++|++||+.+.
T Consensus        12 ~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_          12 NLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            37899999996 8999999854  999999999998764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=3.9e-08  Score=68.12  Aligned_cols=39  Identities=28%  Similarity=0.381  Sum_probs=34.3

Q ss_pred             CHHHHHHHhc-CcHHHHhcc--CCCCChhHHHHHHHHHHHHH
Q 024479            1 MIIHLQALLG-NRWAAIASY--LPQRTDNDIKNYWNTHLKKK   39 (267)
Q Consensus         1 LIi~L~~elG-nKWs~IAk~--LPGRTDNqIKNrWnt~LrKk   39 (267)
                      +|++++++|| .+|..|++.  |+|||+.+||+||+.+++..
T Consensus        12 ~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_          12 WVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCC
Confidence            3789999999 479999997  56999999999999887754

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=8.6e-08  Score=74.25  Aligned_cols=39  Identities=13%  Similarity=0.272  Sum_probs=35.9

Q ss_pred             CHHHHHHHhcCc---HHHHhccCCCCChhHHHHHHHHHHHHH
Q 024479            1 MIIHLQALLGNR---WAAIASYLPQRTDNDIKNYWNTHLKKK   39 (267)
Q Consensus         1 LIi~L~~elGnK---Ws~IAk~LPGRTDNqIKNrWnt~LrKk   39 (267)
                      +|++.|+++|++   |..||++|+||++++|+|||+.+++-.
T Consensus        43 iIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf   84 (95)
T d1ug2a_          43 VILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             HHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            489999999998   999999999999999999999887654

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=8.8e-08  Score=64.56  Aligned_cols=35  Identities=11%  Similarity=0.283  Sum_probs=31.8

Q ss_pred             CHHHHHHHhc-CcHHHHhccCCCCChhHHHHHHHHH
Q 024479            1 MIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTH   35 (267)
Q Consensus         1 LIi~L~~elG-nKWs~IAk~LPGRTDNqIKNrWnt~   35 (267)
                      +|++++.+|| ..|..||++|+|||+.+|++||+.+
T Consensus        11 ~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1          11 ALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             HHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            4789999999 4699999999999999999999864

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=7.9e-08  Score=68.61  Aligned_cols=35  Identities=17%  Similarity=0.177  Sum_probs=32.4

Q ss_pred             CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHH
Q 024479            1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH   35 (267)
Q Consensus         1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~   35 (267)
                      ++++++.+||..|..||.+|||||..+|++||+.+
T Consensus        27 ~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          27 TFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             HHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence            36889999999999999999999999999999854

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=2.9e-07  Score=64.21  Aligned_cols=34  Identities=15%  Similarity=0.299  Sum_probs=31.1

Q ss_pred             CHHHHHHHhcC----cHHHHhccCCCCChhHHHHHHHH
Q 024479            1 MIIHLQALLGN----RWAAIASYLPQRTDNDIKNYWNT   34 (267)
Q Consensus         1 LIi~L~~elGn----KWs~IAk~LPGRTDNqIKNrWnt   34 (267)
                      +|++++.+||.    +|..||.+|||||+.+|++||+.
T Consensus        22 ~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1          22 LLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL   59 (60)
T ss_dssp             HHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            47889999995    69999999999999999999975

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.3e-07  Score=66.77  Aligned_cols=37  Identities=14%  Similarity=0.314  Sum_probs=33.5

Q ss_pred             CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHH
Q 024479            1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLK   37 (267)
Q Consensus         1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~Lr   37 (267)
                      ++++++..||..|..||.+|||||..+|++||+...+
T Consensus        15 ~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1          15 LAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            3678999999999999999999999999999987543

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.19  E-value=9.2e-07  Score=65.54  Aligned_cols=42  Identities=24%  Similarity=0.438  Sum_probs=36.5

Q ss_pred             CHHHHHHHhcC-cHHHHhcc----CCCCChhHHHHHHHHHHHHHHHh
Q 024479            1 MIIHLQALLGN-RWAAIASY----LPQRTDNDIKNYWNTHLKKKLKK   42 (267)
Q Consensus         1 LIi~L~~elGn-KWs~IAk~----LPGRTDNqIKNrWnt~LrKklkk   42 (267)
                      +|++++.+||. +|..|++.    |+|||+.+||.||+.+|+.....
T Consensus        10 ~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~   56 (83)
T d2ckxa1          10 ALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA   56 (83)
T ss_dssp             HHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccC
Confidence            37899999995 89999984    79999999999999999876543

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.05  E-value=0.0099  Score=40.56  Aligned_cols=33  Identities=18%  Similarity=0.279  Sum_probs=29.2

Q ss_pred             HHHHHHHhcCcHHHHhcc-CCCCChhHHHHHHHH
Q 024479            2 IIHLQALLGNRWAAIASY-LPQRTDNDIKNYWNT   34 (267)
Q Consensus         2 Ii~L~~elGnKWs~IAk~-LPGRTDNqIKNrWnt   34 (267)
                      ..+.+.+||..|..|++. +|+||-.+|.++++.
T Consensus        12 F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1          12 FEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             HHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            356789999999999985 799999999999984

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.46  E-value=0.053  Score=37.57  Aligned_cols=31  Identities=23%  Similarity=0.333  Sum_probs=25.2

Q ss_pred             HHHHHHHhc----CcHHHHhccCCCCChhHHHHHHH
Q 024479            2 IIHLQALLG----NRWAAIASYLPQRTDNDIKNYWN   33 (267)
Q Consensus         2 Ii~L~~elG----nKWs~IAk~LPGRTDNqIKNrWn   33 (267)
                      +.++..+|.    .||.+||.+| |||..+|..|++
T Consensus        12 le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k   46 (59)
T d2cqqa1          12 LTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAK   46 (59)
T ss_dssp             HHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHH
T ss_pred             HHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHH
Confidence            344555664    7899999999 999999999875

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.97  E-value=1.1  Score=29.77  Aligned_cols=33  Identities=21%  Similarity=0.392  Sum_probs=26.1

Q ss_pred             HHHHHHHhcCcHHHHhcc---CCCCChhHHHHHHHH
Q 024479            2 IIHLQALLGNRWAAIASY---LPQRTDNDIKNYWNT   34 (267)
Q Consensus         2 Ii~L~~elGnKWs~IAk~---LPGRTDNqIKNrWnt   34 (267)
                      |.+-++.||+.|..|==.   -|||+..++-..++.
T Consensus        12 L~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1          12 LFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             HHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             HHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHh
Confidence            456789999999988654   389999998776654