Citrus Sinensis ID: 024492

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
Protein Sequence
MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQQQEPVINNHSNANHVTARSEICSGASTPDRQDSTTTSSDMSSVTSSAANNACVKTEPSSSENNHDSLVEIDENFWTEVLSAENSGISIEDSNDRFSAVGSADPLSIVEFQSSLDDFRPGSTLCDNTDFWFNLFTKAGDFSEMLPEIL
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHccccccccccccccHHHHHHHHHHHHHHccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHcccccccccHHHHHHHHHHHHHHccccHHHHHcHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHHHcccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccHccccccccccccccccHHHHHHHHcccHHHHccccc
Coil and Loop (DISEMBL)
mvrapccekmglkkgpwtpeedQILINYVKLyghgnwralpkqagllrcgksCRLRWINylrpdikrgnftreEEDTIINLHEMLGNRWSAIAarlpgrtdneiKNVWHTHLKKRLKQkqqqepvinnhsnanhvtarseicsgastpdrqdstttssdmssvtssaannacvktepsssennhdslvEIDENFWTEVLSaensgisiedsndrfsavgsadplsIVEFQsslddfrpgstlcdntDFWFNLFtkagdfsemlpeil
Flexible Loop (DISEMBL)
mvrapccekmglkkgpwtpeeDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINylrpdikrgnftrEEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKqkqqqepvinnhsnanhvtarseicsgastpdrqdstttssdmssvtsSAANNACVktepsssennhdSLVEIDENFWTEVLSAENSGISIEDSNDRFSAVGSADPLSIVEFQSSLDDFRPGSTLCDNTDFWFNLFTKagdfsemlpeil
Low Complexity Region (SEG)
MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHlkkrlkqkqqqEPVINNHSNANHVTARSEICSGAstpdrqdstttssdmssvtssAANNACVKTEPSSSENNHDSLVEIDENFWTEVLSAENSGISIEDSNDRFSAVGSADPLSIVEFQSSLDDFRPGSTLCDNTDFWFNLFTKAGDFSEMLPEIL
Disordered region (IsUnstruct)
**************GPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHL***************************************************************************VEIDENFWTEVLSA**********************LSIVEFQSSLDDFRPGSTLCDNTDFWFNLFTKAGDF********
Disordered Region (DISOPRED)
**RAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLK*******************************************************************************NFWTEVLS****************************************TLCDNTDFWFNLFTKAGDFSEMLPEIL
Disordered Region (DISEMBL)
MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLK**********PVINNHSNANHVTARSEICSG***************************************HDSLVEIDENFWTEVLSAENSGISIEDSNDRFSAVGSADPLSIVEFQSSLDDFRPGSTLCDNTDFWFNLFTKAGDFSEMLPEIL
Disordered Region (DISPRO)
***APCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQ**************************************************************************************************************************CDNTDFWFNLFTKAGDFSEMLPEIL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQQQEPVINNHSNANHVTARSEICSGASTPDRQDSTTTSSDMSSVTSSAANNACVKTEPSSSENNHDSLVEIDENFWTEVLSAENSGISIEDSNDRFSAVGSADPLSIVEFQSSLDDFRPGSTLCDNTDFWFNLFTKAGDFSEMLPEIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	267	2.2.26 [Sep-21-2011]
Q7XBH4	257	Myb-related protein Myb4	yes	no	0.902	0.937	0.478	1e-65
P20024	340	Myb-related protein Zm1 O	N/A	no	0.505	0.397	0.666	1e-51
Q38850	249	Transcription repressor M	no	no	0.621	0.666	0.520	2e-48
P81392	316	Myb-related protein 306 O	N/A	no	0.460	0.389	0.658	2e-47
P27898	399	Myb-related protein P OS=	N/A	no	0.456	0.305	0.663	5e-47
P81395	274	Myb-related protein 330 O	N/A	no	0.434	0.423	0.706	1e-46
Q9SZP1	282	Transcription repressor M	no	no	0.434	0.411	0.689	2e-46
Q9S9K9	257	Transcription factor MYB3	no	no	0.434	0.451	0.672	3e-46
Q38851	236	Transcription repressor M	no	no	0.434	0.491	0.689	3e-46
P20026	267	Myb-related protein Hv1 O	N/A	no	0.524	0.524	0.595	8e-46

>sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2

 Score =  249 bits (637), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 135/282 (47%), Positives = 173/282 (61%), Gaps = 41/282 (14%)

Query: 1   MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
           M RAPCCEKMGLKKGPWTPEED++L+ +++ +GHGNWRALPKQAGLLRCGKSCRLRWINY
Sbjct: 1   MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINY 60

Query: 61  LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQ 120
           LRPDIKRGNF++EEEDTII+LHE+LGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL    
Sbjct: 61  LRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLDAPA 120

Query: 121 QQEPVINNHSNANHVTARS---------------EICSGASTPDRQDSTTTSSDMSSVTS 165
           Q   V  +    +     +                  S + T     S+      ++  S
Sbjct: 121 QGGHVAASGGKKHKKPKSAKKPAAAAAAPPASPERSASSSVTESSMASSVAEEHGNAGIS 180

Query: 166 SAANNACVKTEPSSSENNHDSLVEIDENFWTEVLSAENSGISIE-DSNDRFSAVGSADPL 224
           SA+ + C K E S +  + +   +ID++FW+E LS    G  +  +  D F A  SA   
Sbjct: 181 SASASVCAKEESSFTSASEE--FQIDDSFWSETLSMPLDGYDVSMEPGDAFVAPPSA--- 235

Query: 225 SIVEFQSSLDDFRPGSTLCDNTDFWFNLFTKAGDFSEMLPEI 266
                              D+ D+W  +F ++G+ ++ LP+I
Sbjct: 236 -------------------DDMDYWLGVFMESGE-AQDLPQI 257

Putative transcription factor which is may be involved in cold stress response.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|P20024|MYB1_MAIZE Myb-related protein Zm1 OS=Zea mays PE=2 SV=1

 Score =  203 bits (516), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 90/135 (66%), Positives = 109/135 (80%)

Query: 3   RAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLR 62
           RAPCC K+GL +G WTP+ED  LI Y++ +GH NWRALPKQAGLLRCGKSCRLRWINYLR
Sbjct: 5   RAPCCAKVGLNRGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYLR 64

Query: 63  PDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQQQ 122
           PD+KRGNFT EEE+ II LH +LGN+WS IAA LPGRTDNEIKNVW+THLKK++ Q++++
Sbjct: 65  PDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKKVAQREKK 124

Query: 123 EPVINNHSNANHVTA 137
           +    +       TA
Sbjct: 125 KAGAGSGDAGTPATA 139

Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1.

Zea mays (taxid: 4577)

>sp|Q38850|MYB5_ARATH Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 87/167 (52%), Positives = 120/167 (71%), Gaps = 1/167 (0%)

Query: 4   APCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRP 63
            PCC KMG+K+GPWT EED+IL++++K  G G WR+LPK+AGLLRCGKSCRLRW+NYLRP
Sbjct: 15  TPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRP 74

Query: 64  DIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQQQE 123
            +KRG  T +EED I+ LH +LGNRWS IA R+PGRTDNEIKN W+THL+K+L  +Q  +
Sbjct: 75  SVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKL-LRQGID 133

Query: 124 PVINNHSNANHVTARSEICSGASTPDRQDSTTTSSDMSSVTSSAANN 170
           P  +   +AN++    E  SG      +  +++ +D ++V     ++
Sbjct: 134 PQTHKPLDANNIHKPEEEVSGGQKYPLEPISSSHTDDTTVNGGDGDS 180

Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8.

Arabidopsis thaliana (taxid: 3702)

>sp|P81392|MYB06_ANTMA Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1

 Score =  189 bits (480), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 81/123 (65%), Positives = 100/123 (81%)

Query: 1   MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
           M R PCC+K+G+KKGPWTPEED IL++Y++ +G GNWRA+P   GLLRC KSCRLRW NY
Sbjct: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAIPSNTGLLRCSKSCRLRWTNY 60

Query: 61  LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQ 120
           LRP IKRG+FT  EE  II+L  +LGNRW+AIA+ LP RTDN+IKN W+THLKK+L++ Q
Sbjct: 61  LRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKKLEKLQ 120

Query: 121 QQE 123
             E
Sbjct: 121 SPE 123

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|P27898|MYBP_MAIZE Myb-related protein P OS=Zea mays GN=P PE=2 SV=1

 Score =  187 bits (476), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 81/122 (66%), Positives = 100/122 (81%)

Query: 1   MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
           M R PCCEK+GLK+G WT EEDQ+L NY+  +G G+WR+LPK AGLLRCGKSCRLRWINY
Sbjct: 1   MGRTPCCEKVGLKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINY 60

Query: 61  LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQ 120
           LR D+KRGN ++EEED II LH  LGNRWS IA+ LPGRTDNEIKN W++HL +++   +
Sbjct: 61  LRADVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHTYR 120

Query: 121 QQ 122
           ++
Sbjct: 121 RK 122

Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.

Zea mays (taxid: 4577)

>sp|P81395|MYB30_ANTMA Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1

 Score =  186 bits (472), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 82/116 (70%), Positives = 96/116 (82%)

Query: 1   MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
           M R+PCCEK    KG WT EEDQ LINY++ +G G WR+LPK AGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 116
           LRPD+KRGNFT EE++ II LH +LGN+WS IA  LPGRTDNEIKN W+TH+K++L
Sbjct: 61  LRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKL 116

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1

 Score =  186 bits (471), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 80/116 (68%), Positives = 96/116 (82%)

Query: 1   MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
           M R+PCCEK    KG WT EED+ L+ Y+K +G G WR+LPK AGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 116
           LRPD+KRGNFT EE++ II LH +LGN+WS IA RLPGRTDNEIKN W+TH++++L
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 116

Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score =  185 bits (469), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 78/116 (67%), Positives = 98/116 (84%)

Query: 1   MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
           M R+PCCEK  + KG WT EEDQ+L++Y++ +G G WR+LP+ AGL RCGKSCRLRW+NY
Sbjct: 1   MGRSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNY 60

Query: 61  LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 116
           LRPD+KRGNFT EE++ II LH +LGN+WS IA RLPGRTDNEIKN W+TH+K++L
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116

Arabidopsis thaliana (taxid: 3702)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score =  185 bits (469), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 80/116 (68%), Positives = 96/116 (82%)

Query: 1   MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
           M R+PCCEK    KG WT EEDQ L++Y++ +G G WR+LPK AGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINY 60

Query: 61  LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 116
           LRPD+KRGNFT +E+  II LH +LGN+WS IA RLPGRTDNEIKN W+TH+K++L
Sbjct: 61  LRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116

Arabidopsis thaliana (taxid: 3702)

>sp|P20026|MYB1_HORVU Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1

 Score =  184 bits (466), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 84/141 (59%), Positives = 105/141 (74%), Gaps = 1/141 (0%)

Query: 1   MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
           M R+PCCEK    KG WT EED  L  Y+K +G G WR+LPK AGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQ 120
           LRPD+KRGNF+ EE++ II LH +LGN+WS IA RLPGRTDNEIKN W+TH++++L  + 
Sbjct: 61  LRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLTSR- 119

Query: 121 QQEPVINNHSNANHVTARSEI 141
             +PV +   N++H  +   I
Sbjct: 120 GIDPVTHRAINSDHAASNITI 140

Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.

Hordeum vulgare (taxid: 4513)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
224066247	272	predicted protein [Populus trichocarpa]	0.932	0.915	0.560	1e-76
327412635	272	putative MYB transcription factor [Rosa	0.981	0.963	0.549	2e-74
6552359	281	myb-related transcription factor LBM1 [N	0.958	0.911	0.539	4e-73
6552389	281	myb-related transcription factor LBM4 [N	0.970	0.921	0.517	1e-72
170676240	278	myb-related transcription factor [Capsic	0.970	0.931	0.519	5e-72
156147383	278	myb-related transcription factor [Datura	0.958	0.920	0.538	1e-71
20561	280	protein 2 [Petunia x hybrida]	0.962	0.917	0.525	7e-71
6552361	277	myb-related transcription factor LBM2 [N	0.962	0.927	0.520	2e-70
224082812	264	predicted protein [Populus trichocarpa]	0.902	0.912	0.542	4e-70
224099907	287	predicted protein [Populus trichocarpa]	0.955	0.888	0.517	6e-70

>gi|224066247|ref|XP_002302045.1| predicted protein [Populus trichocarpa] gi|222843771|gb|EEE81318.1| predicted protein [Populus trichocarpa]

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 158/282 (56%), Positives = 190/282 (67%), Gaps = 33/282 (11%)

Query: 1   MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
           MVRAPCCEKMGLK+GPWT EED+ILIN+++LYGHGNWRALPKQAGLLRCGKSCRLRWINY
Sbjct: 1   MVRAPCCEKMGLKRGPWTAEEDRILINHIQLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60

Query: 61  LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQ 120
           LRPDIKRGNF+REEEDTII LHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL+Q  
Sbjct: 61  LRPDIKRGNFSREEEDTIIKLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLEQNH 120

Query: 121 QQEPVINNH----SNANH-------VTARSEICSGASTPDRQDSTTT----SSDMSSVTS 165
              P IN      S  NH       + + S + +      ++    +    SSD+SSVT+
Sbjct: 121 FA-PEINGRSVDVSRFNHELKTGPEIVSSSNVVAAGCDQSKEHRPISPQQCSSDVSSVTT 179

Query: 166 -SAANNACVKTEPSSSENNHDSLVEIDENFWTEVLSAENSGISIEDSNDRFSAVGSADPL 224
              +N+ C K   S      D  +E+DE FW+EVLSA+NS +  +     +SA+ S +P 
Sbjct: 180 VDTSNDMCTKVAES------DDFLEMDEIFWSEVLSADNSSMMSD-----YSAI-STEPQ 227

Query: 225 SIVEFQSSLDDFR----PGSTLCDNTDFWFNLFTKAGDFSEM 262
               F   + D        S + D  DFW NLFT+AG+  E+
Sbjct: 228 LQFPFSPLIIDVEQVQATNSNMYDGMDFWHNLFTRAGELPEL 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327412635|emb|CCA29106.1| putative MYB transcription factor [Rosa rugosa]

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 149/271 (54%), Positives = 182/271 (67%), Gaps = 9/271 (3%)

Query: 1   MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
           MVRAPCCEKMGLKKGPWTPEED +L++Y++ YGHGNWRALPK AGLLRCGKSCRLRW NY
Sbjct: 1   MVRAPCCEKMGLKKGPWTPEEDHVLVSYIQQYGHGNWRALPKLAGLLRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQ 120
           LRPDIKRGNF+REEE+ IINLH+MLGNRWSAIAARLPGRTDNEIKNVWHTHLKK+L  KQ
Sbjct: 61  LRPDIKRGNFSREEEEAIINLHQMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKKLSIKQ 120

Query: 121 QQ-EPVINNHSNANHVTARSEICSGAST-----PDRQDSTTTSSDMSSVTSSAANNACVK 174
               P      +       +  C   S      P      TTS+D +S  +++ NN C  
Sbjct: 121 NSTTPEAQGQESEPEPEPENTSCFAKSESFEYGPVSPPQCTTSADDTSSFTTSENNTCSA 180

Query: 175 TEPSSSENNHDSLVEIDENFWTEVLSAENSGISIEDSNDRFSAVG-SADPLSIVEFQSSL 233
                 +   + L + DE+FW+EVLSA+ +  +   S D   A+G +ADP      +  +
Sbjct: 181 NMGMKVDYEMN-LPQADESFWSEVLSADQNCSNETVSCDFDQAIGAAADPQVNATVEVPV 239

Query: 234 DDFRPGSTLCDN-TDFWFNLFTKAGDFSEML 263
           D    GS + DN  DFW+N+FT AG+ SE+L
Sbjct: 240 DFGFSGSNMYDNCMDFWYNVFTTAGEISELL 270

Source: Rosa rugosa

Species: Rosa rugosa

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6552359|dbj|BAA88221.1| myb-related transcription factor LBM1 [Nicotiana tabacum]

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 157/291 (53%), Positives = 189/291 (64%), Gaps = 35/291 (12%)

Query: 1   MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
           MVRAPCCEKMGLKKGPWTPEEDQIL++Y++  GHGNWRALPK AGLLRCGKSCRLRW NY
Sbjct: 1   MVRAPCCEKMGLKKGPWTPEEDQILVSYIQTNGHGNWRALPKLAGLLRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQ 120
           LRPDIKRGNFTREEED+II LHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLK  Q
Sbjct: 61  LRPDIKRGNFTREEEDSIIQLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKNYQ 120

Query: 121 QQE------------------PVINNHSNANHVTAR-SEICSGASTPDRQDS-----TTT 156
             +                     NN  N +++    +   +G ++P R  S     T  
Sbjct: 121 PPQNSKRHSKNNLDSKAPSTSQTFNNSDNFSNIQEDINGPVTGPNSPQRSSSEMSTVTVD 180

Query: 157 SSDMSSVTSSAANNACVKTEPSSSENNHDSLVEIDENFWTEVLS-AENSGISIEDSNDRF 215
           S+ M+++T    N      E  SSEN    + EIDE+FWT+ LS ++NS   +E +    
Sbjct: 181 STAMTTITIDDQNMFKQLDEMDSSEN---FIPEIDESFWTDDLSTSDNSTFGMEGTGGEL 237

Query: 216 SAVGSADPLSIVEFQSSLDDFRPGSTLCDNTDFWFNLFTKAGDFSEMLPEI 266
                  P S V+ Q S+D    G+ L D+ DFW+N+F K+GD  + LPE 
Sbjct: 238 QV---QFPFSSVK-QESMD--MVGAKLEDDMDFWYNVFIKSGDLLD-LPEF 281

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6552389|dbj|BAA88224.1| myb-related transcription factor LBM4 [Nicotiana tabacum]

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 149/288 (51%), Positives = 190/288 (65%), Gaps = 29/288 (10%)

Query: 1   MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
           MVRAPCCEKMGLKKGPWTPEEDQ+L++Y++  GHGNWRALPK AGLLRCGKSCRLRW NY
Sbjct: 1   MVRAPCCEKMGLKKGPWTPEEDQVLVSYIQTNGHGNWRALPKLAGLLRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQ 120
           LRPDIKRGNFTREEED+II LHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLK  Q
Sbjct: 61  LRPDIKRGNFTREEEDSIIQLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKNYQ 120

Query: 121 QQE------------------PVINNHSNANHVTAR-SEICSGASTPDRQDS--TTTSSD 159
             +                     NN  N +++    +   +G ++P R  S  +T ++D
Sbjct: 121 PPQNSKKHSKNNLDSKAPSTSQTFNNSDNFSNIQEDINGPVTGPNSPQRSSSEMSTVTAD 180

Query: 160 MSSVTSSAANNACVKTEPSSSENNHDSLVEIDENFWTEVLS-AENSGISIEDSNDRFSAV 218
            +++T+   ++  +  +     ++   + EIDE+FWT  LS  +NS   +E + +     
Sbjct: 181 STAMTTITIDDQNMFKQLDEMNSSESFIPEIDESFWTNDLSTGDNSNFDMEGTGEELQV- 239

Query: 219 GSADPLSIVEFQSSLDDFRPGSTLCDNTDFWFNLFTKAGDFSEMLPEI 266
               P S V+ Q S+D    G+ L D+ DFW+N+F K+GD  + LPE 
Sbjct: 240 --QFPFSSVK-QESMD--MVGTKLEDDMDFWYNVFIKSGDLLD-LPEF 281

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|170676240|gb|ACB30359.1| myb-related transcription factor [Capsicum annuum]

 Score =  276 bits (707), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 148/285 (51%), Positives = 186/285 (65%), Gaps = 26/285 (9%)

Query: 1   MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
           MVRAPCCEKMGLKKGPWTPEEDQIL++Y++  GHGNWRALPK AGLLRCGKSCRLRW NY
Sbjct: 1   MVRAPCCEKMGLKKGPWTPEEDQILVSYIQANGHGNWRALPKLAGLLRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQ 120
           LRPDIKRGNFTREEED+II LHEMLGNRWSAIAARLPGRTD+EIKNVWHTHLKKRLK  Q
Sbjct: 61  LRPDIKRGNFTREEEDSIIQLHEMLGNRWSAIAARLPGRTDDEIKNVWHTHLKKRLKNYQ 120

Query: 121 QQE--------PVINNHSNANHVTARSE-----ICSGASTPDRQDSTTTSSDMSSVT--S 165
             E         + +   + + +T +S      I  G + PD      +SS++S+VT  S
Sbjct: 121 APENSKRHCKKNIDSKAPSTSQITLKSSHNFSNIKEGINGPDPNSPQLSSSEVSTVTADS 180

Query: 166 SAANNACVKTEPSSSENNHDSLVEIDENFWTEVLSAENSGISIEDSNDRFSAVGSADPLS 225
            +     V       ++  + + EIDE+FWT+ L      +S  D+++   A+   + L 
Sbjct: 181 ESVMTMGVTNGGDQMDSYENFIPEIDESFWTDDL------LSTADNSNFDMAISGGEELQ 234

Query: 226 ----IVEFQSSLDDFRPGSTLCDNTDFWFNLFTKAGDFSEMLPEI 266
                 + +    +   G+ L D+ DFW+N+F K+GD  E LPE 
Sbjct: 235 GQFPFYDMKQESVELDVGAKLEDDMDFWYNVFIKSGDLLE-LPEF 278

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156147383|gb|ABU53925.1| myb-related transcription factor [Datura metel]

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 155/288 (53%), Positives = 186/288 (64%), Gaps = 32/288 (11%)

Query: 1   MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
           M RAPCCEKMGLKKGPWTPEEDQILI+Y++  GHGNWRALPK AGLL+CGKSCRLRW NY
Sbjct: 1   MGRAPCCEKMGLKKGPWTPEEDQILISYIQSNGHGNWRALPKLAGLLKCGKSCRLRWTNY 60

Query: 61  LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQ 120
           LRPDIKRGNFTREEED+II LHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLK  Q
Sbjct: 61  LRPDIKRGNFTREEEDSIIQLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKNYQ 120

Query: 121 QQEPVINNHSNANHVTA--RSEICSGAS-------------TPDRQDSTTTSSDMSSVTS 165
             +    +  N N   A   S+I   +S              P       +SS+MS+VT+
Sbjct: 121 PPQTSKRHCKNNNDSKAPSTSQIALKSSHNFSNIQEDINGPGPGPNSPQRSSSEMSTVTA 180

Query: 166 -SAANNACVKTEPSSSENNHDSLVEIDENFWTEVLSAENSGISIEDSNDRFSAVGSADPL 224
            S A    +       +++ + + EIDE+FWT+ LS  +        N  F+ VGS    
Sbjct: 181 DSLAVTMGITNGGGHMDSSENFIPEIDESFWTDDLSTAD--------NSNFNMVGSGGEE 232

Query: 225 SIVEF------QSSLDDFRPGSTLCDNTDFWFNLFTKAGDFSEMLPEI 266
             V+F      Q S+ +   G+ L D+ DFW+N+F K+GD  E LPE 
Sbjct: 233 LQVQFPFHAMKQESV-EMDVGAKLEDDMDFWYNVFIKSGDLLE-LPEF 278

Source: Datura metel

Species: Datura metel

Genus: Datura

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20561|emb|CAA78387.1| protein 2 [Petunia x hybrida]

 Score =  273 bits (697), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 152/289 (52%), Positives = 189/289 (65%), Gaps = 32/289 (11%)

Query: 1   MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
           M RAPCCEKMGLKKGPWTPEEDQIL++Y++  GHGNWRALPK AGLLRCGKSCRLRW NY
Sbjct: 1   MGRAPCCEKMGLKKGPWTPEEDQILVSYIEKNGHGNWRALPKLAGLLRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQ 120
           LRPDIKRGNFTREEEDTII LHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLK  Q
Sbjct: 61  LRPDIKRGNFTREEEDTIIQLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKNYQ 120

Query: 121 ----QQEPVINNHSNANHVTAR---------------SEICSGASTPDR---QDSTTTSS 158
                +    NNH +    T++               +E  +G ++P R   + ST T+ 
Sbjct: 121 PPQNSKRHSKNNHDSKAPSTSKMLDNSESFSTIQENINEPMTGPNSPQRSSSESSTVTAD 180

Query: 159 DMSSVTSSAANNACVKTEPSSSENNHDSLVEIDENFWTEVLS-AENSGISIEDSNDRFSA 217
            +++   +  +   +K E   S   +++  EIDE+FWTE LS  +N  + +E + ++   
Sbjct: 181 SLAATDVTNDDQTFIKHEEMDS---YENFPEIDESFWTEDLSMGDNLDLDMEVAGEKSQV 237

Query: 218 VGSADPLSIVEFQSSLDDFRPGSTLCDNTDFWFNLFTKAGDFSEMLPEI 266
                P S    + S+D    G+ L D+ DFW+N+F KA D  + LPE 
Sbjct: 238 QF---PYSHDMKEQSVDMV--GAKLEDDMDFWYNVFIKAEDLLD-LPEF 280

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6552361|dbj|BAA88222.1| myb-related transcription factor LBM2 [Nicotiana tabacum]

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 149/286 (52%), Positives = 184/286 (64%), Gaps = 29/286 (10%)

Query: 1   MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
           M RAPCCEKMGLKKGPWTPEEDQILI++++  GHGNWRALPKQAGLLRCGKSCRLRW NY
Sbjct: 1   MGRAPCCEKMGLKKGPWTPEEDQILISFIQQNGHGNWRALPKQAGLLRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQ 120
           LRPDIKRGNFT+EEEDTII LHEMLGNRWSAIAA+LPGRTDNEIKNVWHTHLKK+LK  +
Sbjct: 61  LRPDIKRGNFTKEEEDTIIQLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKKLKDYK 120

Query: 121 QQE-------------PVINNHSNANHVT---ARSEICSGASTPDRQDSTTTSSDMSSVT 164
             +             P  +  SN +H+T    +  I   +         ++S++MS+VT
Sbjct: 121 PPQNPKRHSKNHDSKGPTTSESSNNSHLTFIYTQKHIIDSSVPAPNSPQISSSTEMSTVT 180

Query: 165 SSAANNACVKTEPSSSENNHDSLVEIDENFWTEVLSAENSGISIEDSNDRFSAVGSADPL 224
               +   +K E   S    +   EIDE+FWT+ LS +N+      SN     + +AD  
Sbjct: 181 LVDDHQMVIKQEEMESS---EYFPEIDESFWTDKLSTDNNW-----SNTHDHVMVTADQE 232

Query: 225 SIVEFQ-SSLDDFRPG---STLCDNTDFWFNLFTKAGDFSEMLPEI 266
             V+   SSL +       + + D+ DFW+N+F K  D  E LPE 
Sbjct: 233 LQVQLPFSSLKEENVDMLTTKMEDDMDFWYNVFIKTDDLPE-LPEF 277

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082812|ref|XP_002306849.1| predicted protein [Populus trichocarpa] gi|222856298|gb|EEE93845.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (691), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 152/280 (54%), Positives = 184/280 (65%), Gaps = 39/280 (13%)

Query: 10  MGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGN 69
           MGLKKGPWT EEDQILINY++L+GHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGN
Sbjct: 1   MGLKKGPWTAEEDQILINYIQLHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGN 60

Query: 70  FTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQQQEPVINNH 129
           F+REEEDTII LHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL +K    P I   
Sbjct: 61  FSREEEDTIIKLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL-EKNHVTPEIKGR 119

Query: 130 S-----------NANHVTARSEICSGASTPDRQDSTT---TSSDMSSVTSS---AANNAC 172
           S               +   S + +G+   +     +    SSD SS+ +     +NN C
Sbjct: 120 SVDISRFDHELNTDQELLDSSNLAAGSDQTEEHRPISPQQCSSDTSSLITGDIDISNNMC 179

Query: 173 VKTEPSSSENNHDSLVEIDENFWTEVLSAENSGISIEDSNDRFSAVGSADPLS------I 226
           +K E S      D   E+DE+FW+EVLSA+NS I  +     FSA+G+   L       +
Sbjct: 180 MKIESS------DDFPEMDESFWSEVLSADNSRIVSD-----FSAIGTEPQLQFPFSPLV 228

Query: 227 VEFQSSLDDFRPGSTLCDNTDFWFNLFTKAGDFSEMLPEI 266
           +E +     +   S + D+T++W +LFT+AG  S  LPEI
Sbjct: 229 IEVEQV---YATNSNMYDSTEYWHDLFTRAGG-SLDLPEI 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099907|ref|XP_002311670.1| predicted protein [Populus trichocarpa] gi|222851490|gb|EEE89037.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (689), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 149/288 (51%), Positives = 183/288 (63%), Gaps = 33/288 (11%)

Query: 1   MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
           MVRAPCCEKMGLK+GPWTPEEDQILI+YV+ YGH NWRALPKQAGL RCGKSCRLRW+NY
Sbjct: 1   MVRAPCCEKMGLKRGPWTPEEDQILISYVQKYGHSNWRALPKQAGLQRCGKSCRLRWVNY 60

Query: 61  LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQ-- 118
           LRPDIKRGNF++EEE+ II LHE+LGNRWSAIA+RLPGRTDNEIKNVWHTHL KRLKQ  
Sbjct: 61  LRPDIKRGNFSKEEEEAIIKLHEILGNRWSAIASRLPGRTDNEIKNVWHTHLLKRLKQNG 120

Query: 119 ---KQQQEPVINNHSNANHV--TARSEICS---------GASTPDRQDSTTTSSDMSSVT 164
               QQ   + + H N N +  +A S I S            +P    S  +S   +SVT
Sbjct: 121 EPKSQQHIRIPDCHLNDNKLSQSANSTIPSLSGCKSIEYAQISPQPSSSDHSSVTDTSVT 180

Query: 165 SSAANN-ACVKTEPSSSENNHDSLVEIDENFWTEVLSAENSGIS----IEDSNDRFSAVG 219
           +S  NN   +K E   S   +     IDE+FW+E    ENSG+     ++DS   F +  
Sbjct: 181 TSETNNTGLIKVENIDSSEIYPV---IDEDFWSEPEMVENSGMPSSNFLDDSQFPFPSPD 237

Query: 220 SADPLSIVEFQSSLDDFRPGSTLCDNTDFWFNLFTKAGDFSEMLPEIL 267
           + +      +   +D         DN +FW+NLF K+G   E+  + L
Sbjct: 238 TMERAGCYGYGPKVD---------DNMEFWYNLFIKSGGIEELPVQYL 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
TAIR|locus:2042526	249	MYB14 "myb domain protein 14"	0.726	0.779	0.568	1.4e-62
TAIR|locus:2086233	285	MYB15 "myb domain protein 15"	0.535	0.501	0.685	5.4e-59
TAIR|locus:2038520	246	MYB13 "myb domain protein 13"	0.760	0.825	0.532	1.3e-54
TAIR|locus:2115708	324	MYB74 "myb domain protein 74"	0.415	0.342	0.767	6e-50
TAIR|locus:2102152	388	MYB106 "myb domain protein 106	0.486	0.335	0.648	3.3e-49
TAIR|locus:2075387	321	MYB107 "myb domain protein 107	0.415	0.345	0.783	8.5e-49
TAIR|locus:2132957	282	MYB41 "myb domain protein 41"	0.415	0.393	0.747	6e-48
TAIR|locus:2141231	350	MYB102 "MYB-like 102" [Arabido	0.415	0.317	0.765	4.2e-47
TAIR|locus:2149000	336	MYB9 "myb domain protein 9" [A	0.415	0.330	0.756	8.8e-47
TAIR|locus:2098906	299	MYB17 "myb domain protein 17"	0.415	0.371	0.738	2.3e-46

TAIR|locus:2042526 MYB14 "myb domain protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
 Identities = 116/204 (56%), Positives = 133/204 (65%)

Query:     1 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
             M RAPCCEKMG+K+GPWTPEEDQILINY+ LYGH NWRALPK AGLLRCGKSCRLRWINY
Sbjct:     1 MGRAPCCEKMGVKRGPWTPEEDQILINYIHLYGHSNWRALPKHAGLLRCGKSCRLRWINY 60

Query:    61 LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHXXXXXXXXX 120
             LRPDIKRGNFT +EE TIINLHE LGNRWSAIAA+LPGRTDNEIKNVWHTH         
Sbjct:    61 LRPDIKRGNFTPQEEQTIINLHESLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLSKN- 119

Query:   121 XXEPVINNHSNANHVTARSEICSGAXXXXXXXXXXXXXXXXXXXXXAANNACVKTEPSSS 180
                  +NN  +   V   +E  +                         +N   K +  S 
Sbjct:   120 -----LNNGGDTKDVNGINETTNEDKGSVIVDTASLQQFSNSITTFDISNDN-KDDIMSY 173

Query:   181 ENNHDSLVEIDENFWTEVLSAENS 204
             E   D    ID++FW++V+S +NS
Sbjct:   174 E---DISALIDDSFWSDVISVDNS 194

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

TAIR|locus:2086233 MYB15 "myb domain protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 554 (200.1 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
 Identities = 98/143 (68%), Positives = 114/143 (79%)

Query:     1 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
             M RAPCCEKMGLK+GPWTPEEDQIL++++  +GH NWRALPKQAGLLRCGKSCRLRW+NY
Sbjct:     1 MGRAPCCEKMGLKRGPWTPEEDQILVSFILNHGHSNWRALPKQAGLLRCGKSCRLRWMNY 60

Query:    61 LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHXXXXXXXXX 120
             L+PDIKRGNFT+EEED II+LH++LGNRWSAIAA+LPGRTDNEIKNVWHTH         
Sbjct:    61 LKPDIKRGNFTKEEEDAIISLHQILGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLEDYQ 120

Query:   121 XXEPVINNHSNANHVTARSEICS 143
               +P  +N        + S I S
Sbjct:   121 PAKPKTSNKKKGTKPKSESVITS 143

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2038520 MYB13 "myb domain protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 114/214 (53%), Positives = 138/214 (64%)

Query:     1 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
             M R PCCEK+GLKKGPW+ EED+ILINY+ L+GH NWRALPK AGLLRCGKSCRLRWINY
Sbjct:     1 MGRRPCCEKIGLKKGPWSAEEDRILINYISLHGHPNWRALPKLAGLLRCGKSCRLRWINY 60

Query:    61 LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHXXXXXXXXX 120
             LRPDIKRGNFT  EEDTII+LH++LGNRWSAIAA+LPGRTDNEIKNVWHTH         
Sbjct:    61 LRPDIKRGNFTPHEEDTIISLHQLLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLHHSQ 120

Query:   121 XXEPVINNHSNANHVTARSEICSGAXXXXXXXXXXXXXXXXXXXXXAANNACVKTEPSSS 180
                   NN  +    TA +E+ +                         NN    +   S+
Sbjct:   121 DQ----NNKEDFVSTTA-AEMPTSPQQQSSSSADISAITTLGN-----NNDISNSNKDSA 170

Query:   181 ENNHDSLVEIDENFWTEVLSAENSGISIEDSNDR 214
              ++ D L  IDE+FW+EV+  +   IS  + N++
Sbjct:   171 TSSEDVLAIIDESFWSEVVLMD-CDISGNEKNEK 203

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2115708 MYB74 "myb domain protein 74" [Arabidopsis thaliana (taxid:3702)]

 Score = 493 (178.6 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
 Identities = 86/112 (76%), Positives = 98/112 (87%)

Query:     1 MVRAPCCEKM-GLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWIN 59
             M R+PCCEK  GLKKGPWTPEEDQ LI+Y+ ++G+GNWR LPK AGL RCGKSCRLRW N
Sbjct:     1 MGRSPCCEKKNGLKKGPWTPEEDQKLIDYINIHGYGNWRTLPKNAGLQRCGKSCRLRWTN 60

Query:    60 YLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 111
             YLRPDIKRG F+ EEE+TII LH ++GN+WSAIAARLPGRTDNEIKN W+TH
Sbjct:    61 YLRPDIKRGRFSFEEEETIIQLHSIMGNKWSAIAARLPGRTDNEIKNYWNTH 112

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2102152 MYB106 "myb domain protein 106" [Arabidopsis thaliana (taxid:3702)]

 Score = 482 (174.7 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
 Identities = 85/131 (64%), Positives = 101/131 (77%)

Query:     1 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
             M+ +PCC+K GLKKGPWTPEEDQ L+ Y++ +GHG+WR+LP++AGL RCGKSCRLRW NY
Sbjct:    44 MIISPCCDKAGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLQRCGKSCRLRWTNY 103

Query:    61 LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHXXXXXXXXX 120
             LRPDIKRG FT +EE TII LH +LGNRWSAIA  LP RTDNEIKN W+TH         
Sbjct:   104 LRPDIKRGKFTVQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLIKMG 163

Query:   121 XXEPVINNHSN 131
               +PV + H N
Sbjct:   164 I-DPVTHKHKN 173

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0010091 "trichome branching" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2075387 MYB107 "myb domain protein 107" [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 87/111 (78%), Positives = 99/111 (89%)

Query:     1 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
             M R+PCC++ GLKKGPWTPEEDQ LIN+++ +GHG+WRALPKQAGL RCGKSCRLRW NY
Sbjct:     1 MGRSPCCDESGLKKGPWTPEEDQKLINHIRKHGHGSWRALPKQAGLNRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 111
             LRPDIKRGNFT EEE TIINLH +LGN+WS+IA  LPGRTDNEIKN W+TH
Sbjct:    61 LRPDIKRGNFTAEEEQTIINLHSLLGNKWSSIAGHLPGRTDNEIKNYWNTH 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2132957 MYB41 "myb domain protein 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
 Identities = 83/111 (74%), Positives = 96/111 (86%)

Query:     1 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
             M R+PCC+K G+KKGPWT EEDQ LI+Y++ +G GNWR LPK AGL RCGKSCRLRW NY
Sbjct:     1 MGRSPCCDKNGVKKGPWTAEEDQKLIDYIRFHGPGNWRTLPKNAGLHRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 111
             LRPDIKRG F+ EEE+TII LH ++GN+WSAIAARLPGRTDNEIKN W+TH
Sbjct:    61 LRPDIKRGRFSFEEEETIIQLHSVMGNKWSAIAARLPGRTDNEIKNHWNTH 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0016049 "cell growth" evidence=IMP

GO:0042335 "cuticle development" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0080090 "regulation of primary metabolic process" evidence=IMP

GO:0080091 "regulation of raffinose metabolic process" evidence=IMP

TAIR|locus:2141231 MYB102 "MYB-like 102" [Arabidopsis thaliana (taxid:3702)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 85/111 (76%), Positives = 96/111 (86%)

Query:     1 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
             M R+PCCEK GLKKGPWT EEDQ L++Y++ +G+GNWR LPK AGL RCGKSCRLRW NY
Sbjct:     1 MARSPCCEKNGLKKGPWTSEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 111
             LRPDIKRG F+ EEE+TII LH  LGN+WSAIAARLPGRTDNEIKN W+TH
Sbjct:    61 LRPDIKRGRFSFEEEETIIQLHSFLGNKWSAIAARLPGRTDNEIKNFWNTH 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2149000 MYB9 "myb domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 84/111 (75%), Positives = 97/111 (87%)

Query:     1 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
             M R+PCC++ GLKKGPWT EED  LI++++ +GHG+WRALPKQAGL RCGKSCRLRW NY
Sbjct:     1 MGRSPCCDENGLKKGPWTQEEDDKLIDHIQKHGHGSWRALPKQAGLNRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 111
             LRPDIKRGNFT EEE TIINLH +LGN+WS+IA  LPGRTDNEIKN W+TH
Sbjct:    61 LRPDIKRGNFTEEEEQTIINLHSLLGNKWSSIAGNLPGRTDNEIKNYWNTH 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2098906 MYB17 "myb domain protein 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 82/111 (73%), Positives = 97/111 (87%)

Query:     1 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
             M R PCC+K+GLKKGPWTPEED++L+ ++K  GHG+WR LPK AGLLRCGKSCRLRW NY
Sbjct:     1 MGRTPCCDKIGLKKGPWTPEEDEVLVAHIKKNGHGSWRTLPKLAGLLRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 111
             LRPDIKRG FT +EE  +I LH +LGNRW+AIAA+LPGRTDNEIKN+W+TH
Sbjct:    61 LRPDIKRGPFTADEEKLVIQLHAILGNRWAAIAAQLPGRTDNEIKNLWNTH 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0048443 "stamen development" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7XBH4	MYB4_ORYSJ	No assigned EC number	0.4787	0.9026	0.9377	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	267
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	2e-60
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	7e-57
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	7e-17
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	8e-17
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	3e-14
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	1e-13
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-12
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-11
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	8e-11
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-09
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	3e-06
cd11659	53	cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding d	5e-04
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	6e-04

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  191 bits (486), Expect = 2e-60
 Identities = 87/159 (54%), Positives = 118/159 (74%), Gaps = 1/159 (0%)

Query: 5   PCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPD 64
           PCC KMG+K+GPWT EED+IL++++K  G G WR+LPK+AGLLRCGKSCRLRW+NYLRP 
Sbjct: 16  PCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPS 75

Query: 65  IKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQQQEP 124
           +KRG  T +EED I+ LH +LGNRWS IA R+PGRTDNEIKN W+THL+K+L  +Q  +P
Sbjct: 76  VKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKL-LRQGIDP 134

Query: 125 VINNHSNANHVTARSEICSGASTPDRQDSTTTSSDMSSV 163
             +   +AN++    E  SG      +  +++ +D ++V
Sbjct: 135 QTHKPLDANNIHKPEEEVSGGQKYPIEPISSSHTDDTTV 173

Length = 249

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  188 bits (478), Expect = 7e-57
 Identities = 78/119 (65%), Positives = 99/119 (83%)

Query: 1   MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
           M R  CC K  L+KG W+PEED+ L+ ++  YGHG W ++PKQAGL RCGKSCRLRWINY
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60

Query: 61  LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQK 119
           LRPD+KRG F+++EE+ II LH +LGNRWS IAA+LPGRTDNEIKN+W++ LKK+L+Q+
Sbjct: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR 119

Length = 459

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 72.2 bits (178), Expect = 7e-17
 Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 14 KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYL 61
          +GPWTPEED++LI  VK +G+GNW  + K     R    C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLP-GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 79.4 bits (196), Expect = 8e-17
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 12  LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFT 71
            K G W   ED+ L   VK  G  NW  +         GK    RW N+L P +K+ N++
Sbjct: 18  RKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWS 76

Query: 72  REEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLK 117
            EE++ +I+L + LG +WS IA     RT  +    +   L+    
Sbjct: 77  EEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDLSS 122

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 65.2 bits (160), Expect = 3e-14
 Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 67  RGNFTREEEDTIINLHEMLGNR-WSAIAARLPGRTDNEIKNVWHTHL 112
           RG +T EE++ +I   +  GN  WS IA  LPGRTDN+ KN W+ +L
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 63.9 bits (156), Expect = 1e-13
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 17 WTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEED 76
          WT EED+ L+  V+ YG  +W+ + ++ G  R   +CR RW   LRP   RG +T+EE+ 
Sbjct: 1  WTEEEDEKLLKLVEKYG-NDWKQIAEELG--RTPSACRDRWRRKLRPKRSRGPWTKEEDQ 57

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 60.3 bits (147), Expect = 2e-12
 Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 14 KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRP 63
          KG WT EED++LI  VK YG  NW  + K+    R  + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 57.6 bits (140), Expect = 1e-11
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 16 PWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYL 61
          PWT EED++L+  VK YG  NW  + K+    R  K CR RW N L
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 55.7 bits (135), Expect = 8e-11
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 67  RGNFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHLKK 114
           +G +T EE++ +I L +  G N W  IA  LPGRT  + +  W   LK 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 52.2 bits (126), Expect = 1e-09
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 69  NFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHL 112
            +T EE++ ++   +  G N W  IA  LPGRT  + +  W   L
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 70  FTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQ 118
           +T EE++ ++ L E  GN W  IA  L GRT +  ++ W   L+ +  +
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKRSR 48

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212557 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 63  PDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDN 102
           P IK+  +TREE++ +++L ++L  +W  I A + GRT  
Sbjct: 1   PSIKKTEWTREEDEKLLHLAKLLPTQWRTI-APIVGRTAQ 39

In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins. Length = 53

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 16 PWTPEEDQILINYVKLYGHGNWR 38
           WT EED+ L+  V+ YG GNW 
Sbjct: 2  KWTDEEDEALVEGVEKYGVGNWA 24

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	267
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
PLN03091	459	hypothetical protein; Provisional	100.0
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.78
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.66
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.65
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.61
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.57
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.45
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.44
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.38
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.33
PLN03212	249	Transcription repressor MYB5; Provisional	99.29
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.28
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.23
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.16
PLN03091	459	hypothetical protein; Provisional	99.12
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.05
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.89
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.88
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.31
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.72
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.68
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.64
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.6
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.58
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.52
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	97.25
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.18
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	97.05
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.0
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.86
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	96.73
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.58
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.52
PRK13923	170	putative spore coat protein regulator protein YlbO	96.44
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.3
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.09
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	95.9
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.52
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.23
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	94.89
KOG2656	445	consensus DNA methyltransferase 1-associated prote	94.67
PRK13923	170	putative spore coat protein regulator protein YlbO	94.5
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	94.04
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	93.85
KOG4282	345	consensus Transcription factor GT-2 and related pr	93.71
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	93.12
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	91.42
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	88.32
smart00595	89	MADF subfamily of SANT domain.	87.07
KOG1194	534	consensus Predicted DNA-binding protein, contains	83.32
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	82.27
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	80.18

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=5e-39  Score=288.80  Aligned_cols=119  Identities=66%  Similarity=1.303  Sum_probs=113.9

Q ss_pred             CccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHH
Q 024492            3 RAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLH   82 (267)
Q Consensus         3 R~p~~~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv   82 (267)
                      |+|||.|+++++|+||+|||++|+++|++||..+|..||+.++.+|+++|||+||.++|+|.+++++||.|||++|+++|
T Consensus        14 ~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~   93 (249)
T PLN03212         14 TTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLH   93 (249)
T ss_pred             CCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999975599999999999999999999999999999999999


Q ss_pred             HHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhHHHhhhhc
Q 024492           83 EMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQQ  121 (267)
Q Consensus        83 ~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk~~~~~~~  121 (267)
                      .+||++|+.||++|||||+++|||||+.++++++.+...
T Consensus        94 ~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i  132 (249)
T PLN03212         94 RLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGI  132 (249)
T ss_pred             HhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCC
Confidence            999999999999999999999999999999998776543

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=4.7e-39  Score=307.50  Aligned_cols=120  Identities=65%  Similarity=1.238  Sum_probs=116.1

Q ss_pred             CCCccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHH
Q 024492            1 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIIN   80 (267)
Q Consensus         1 m~R~p~~~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~   80 (267)
                      |||++||.|.+++||+||+|||++|+++|.+||..+|..||+.++.+|+++|||+||.+||+|++++++||+|||++|++
T Consensus         1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLe   80 (459)
T PLN03091          1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE   80 (459)
T ss_pred             CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998756999999999999999999999999999999999


Q ss_pred             HHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhHHHhhhh
Q 024492           81 LHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQ  120 (267)
Q Consensus        81 lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk~~~~~~  120 (267)
                      +|++||++|++||++|||||+++|||||+.++|++++++.
T Consensus        81 L~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~  120 (459)
T PLN03091         81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG  120 (459)
T ss_pred             HHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999887553

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=1.3e-37  Score=280.54  Aligned_cols=112  Identities=67%  Similarity=1.128  Sum_probs=106.8

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCCc
Q 024492            9 KMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNR   88 (267)
Q Consensus         9 K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~k   88 (267)
                      |+.+.||+||+|||++|++||++||+++|..||+.+|.+|++|+||+||.|||+|++++|.||+|||++|++||..|||+
T Consensus         4 k~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr   83 (238)
T KOG0048|consen    4 NPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNR   83 (238)
T ss_pred             CccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcH
Confidence            34456899999999999999999999999999999996699999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCCCCHHHHHHHHHHhhhHHHhhhh
Q 024492           89 WSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQ  120 (267)
Q Consensus        89 Ws~IA~~lpgRT~~q~knRW~~llrk~~~~~~  120 (267)
                      |+.||++|||||+++|||+|+.++|+++.+..
T Consensus        84 Ws~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   84 WSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999988765

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.78  E-value=1.7e-19  Score=178.89  Aligned_cols=106  Identities=25%  Similarity=0.499  Sum_probs=100.4

Q ss_pred             CCCccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHH
Q 024492            1 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIIN   80 (267)
Q Consensus         1 m~R~p~~~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~   80 (267)
                      ++|+-....|++++|+||++||.+|+.+|.+||..+|-+|-..+|+ |+..|||+||.|.|+...|++.||-.||+.|+.
T Consensus       347 I~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPn-RSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~  425 (939)
T KOG0049|consen  347 ITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPN-RSDSQCRERYTNVLNRSAKVERWTLVEDEQLLY  425 (939)
T ss_pred             hhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCC-ccHHHHHHHHHHHHHHhhccCceeecchHHHHH
Confidence            5788899999999999999999999999999999999999999998 999999999999999999999999999999999


Q ss_pred             HHHHcC-CcHHHHhhhCCCCCHHHHHHH
Q 024492           81 LHEMLG-NRWSAIAARLPGRTDNEIKNV  107 (267)
Q Consensus        81 lv~~~G-~kWs~IA~~lpgRT~~q~knR  107 (267)
                      +|++|| ++|.+||..||.||..|...|
T Consensus       426 ~V~~YG~g~WakcA~~Lp~~t~~q~~rr  453 (939)
T KOG0049|consen  426 AVKVYGKGNWAKCAMLLPKKTSRQLRRR  453 (939)
T ss_pred             HHHHHccchHHHHHHHccccchhHHHHH
Confidence            999999 899999999999999665443

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.66  E-value=1.1e-16  Score=159.11  Aligned_cols=107  Identities=23%  Similarity=0.455  Sum_probs=99.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC---CCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCCc
Q 024492           12 LKKGPWTPEEDQILINYVKLYGH---GNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNR   88 (267)
Q Consensus        12 lkkG~WT~EEDe~L~~~V~~~G~---~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~k   88 (267)
                      ++...||.|||.+|+++|+....   .+|++|-..|++ |+..|...||...|+|.+++|.||.+||.+|+.+|.+||.+
T Consensus       303 L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympg-r~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~k  381 (939)
T KOG0049|consen  303 LSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPG-RTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAK  381 (939)
T ss_pred             HHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCC-cchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCcc
Confidence            56789999999999999998743   489999999999 99999999999999999999999999999999999999965


Q ss_pred             -HHHHhhhCCCCCHHHHHHHHHHhhhHHHhhh
Q 024492           89 -WSAIAARLPGRTDNEIKNVWHTHLKKRLKQK  119 (267)
Q Consensus        89 -Ws~IA~~lpgRT~~q~knRW~~llrk~~~~~  119 (267)
                       |.+|-..+|||++.|||.||++.|..+.|..
T Consensus       382 dw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~  413 (939)
T KOG0049|consen  382 DWAKVRQAVPNRSDSQCRERYTNVLNRSAKVE  413 (939)
T ss_pred             chhhHHHhcCCccHHHHHHHHHHHHHHhhccC
Confidence             9999999999999999999999998876644

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.65  E-value=8.9e-17  Score=115.16  Aligned_cols=60  Identities=47%  Similarity=0.986  Sum_probs=55.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHH
Q 024492           17 WTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTI   78 (267)
Q Consensus        17 WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~L   78 (267)
                      ||+|||++|+.+|..||. +|..||++||. |+..||+.||.++|+|.+++++||.+||++|
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~~-Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIAEHLGN-RTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHHHHSTT-S-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHHHHHCc-CCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999995 99999999975 9999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.61  E-value=5e-16  Score=153.08  Aligned_cols=108  Identities=31%  Similarity=0.515  Sum_probs=102.8

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCCc
Q 024492            9 KMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNR   88 (267)
Q Consensus         9 K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~k   88 (267)
                      ...++.|.|+..||+.|..+|+.||+.+|..||..+.. |+++||+.||+++++|.++++.|+.|||+.|+.+..++|++
T Consensus        15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~-~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~   93 (512)
T COG5147          15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ   93 (512)
T ss_pred             cceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcc-cccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch
Confidence            34567899999999999999999999999999999998 99999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCCCCHHHHHHHHHHhhhHHHh
Q 024492           89 WSAIAARLPGRTDNEIKNVWHTHLKKRLK  117 (267)
Q Consensus        89 Ws~IA~~lpgRT~~q~knRW~~llrk~~~  117 (267)
                      |+.||..++|||..+|.+||...+....+
T Consensus        94 wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          94 WSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            99999999999999999999999887665

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=7.5e-16  Score=150.10  Aligned_cols=106  Identities=26%  Similarity=0.619  Sum_probs=100.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCCcHHH
Q 024492           12 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSA   91 (267)
Q Consensus        12 lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~kWs~   91 (267)
                      ++.|.|+.-||+.|..+|.+||...|.+|++.+.- .+++||+.||..+|+|.|++..|+.|||++|+.+.+.+.+.|..
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~-kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrt   83 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNR-KTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRT   83 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhh-cchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccch
Confidence            57799999999999999999999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             HhhhCCCCCHHHHHHHHHHhhhHHHhhh
Q 024492           92 IAARLPGRTDNEIKNVWHTHLKKRLKQK  119 (267)
Q Consensus        92 IA~~lpgRT~~q~knRW~~llrk~~~~~  119 (267)
                      ||..| ||+.+||-.||..++-.....-
T Consensus        84 Ia~i~-gr~~~qc~eRy~~ll~~~~s~~  110 (617)
T KOG0050|consen   84 IADIM-GRTSQQCLERYNNLLDVYVSYH  110 (617)
T ss_pred             HHHHh-hhhHHHHHHHHHHHHHHHHhhh
Confidence            99999 9999999999999997665443

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.45  E-value=1.2e-13  Score=95.20  Aligned_cols=46  Identities=33%  Similarity=0.719  Sum_probs=42.0

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCc-HHHHhhhCC-CCCHHHHHHHHHHhh
Q 024492           67 RGNFTREEEDTIINLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL  112 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~G~k-Ws~IA~~lp-gRT~~q~knRW~~ll  112 (267)
                      |++||.|||++|++++.+||.. |..||..|+ |||..||++||+.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5899999999999999999988 999999999 999999999999874

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.44  E-value=1.1e-13  Score=138.03  Aligned_cols=107  Identities=28%  Similarity=0.561  Sum_probs=95.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCC--CCCCCCHHHHHHHHHHHH-------
Q 024492           13 KKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDI--KRGNFTREEEDTIINLHE-------   83 (267)
Q Consensus        13 kkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~i--kkg~WT~EED~~Li~lv~-------   83 (267)
                      .+|.||+||++.|..+|.++|. .|..|++.++  |.+..|++||.+|..++-  ++|.||.||+++|+++|.       
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            7999999999999999999996 9999999998  999999999999999984  899999999999999995       


Q ss_pred             Hc-------------------CCcHHHHhhhCCCCCHHHHHHHHHHhhhHHHhhhhcc
Q 024492           84 ML-------------------GNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQQQ  122 (267)
Q Consensus        84 ~~-------------------G~kWs~IA~~lpgRT~~q~knRW~~llrk~~~~~~~~  122 (267)
                      ++                   +-+|..|++.+..|+..|||-+|..++......+.+.
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~~  517 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQE  517 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcccc
Confidence            33                   1259999999999999999999999998766554443

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.38  E-value=9.5e-14  Score=95.76  Aligned_cols=48  Identities=46%  Similarity=0.858  Sum_probs=42.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhccc
Q 024492           14 KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYL   61 (267)
Q Consensus        14 kG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L   61 (267)
                      ||+||+|||++|+++|.+||..+|..||..+|++|++.||+.||+++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999998669999999994499999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.33  E-value=1.3e-12  Score=93.48  Aligned_cols=47  Identities=34%  Similarity=0.762  Sum_probs=40.4

Q ss_pred             CCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhHHH
Q 024492           70 FTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL  116 (267)
Q Consensus        70 WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk~~  116 (267)
                      ||+|||++|+++|++||++|.+||++|+.||..+|++||+.+|++.+
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~   47 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKI   47 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTS
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccc
Confidence            99999999999999999999999999966999999999999776543

...

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.29  E-value=3.2e-12  Score=115.80  Aligned_cols=68  Identities=22%  Similarity=0.477  Sum_probs=58.1

Q ss_pred             hcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcC-CcHHHHhhhC-CCCCHHHHHHHHHHhhhHHHhhh
Q 024492           44 AGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLG-NRWSAIAARL-PGRTDNEIKNVWHTHLKKRLKQK  119 (267)
Q Consensus        44 l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G-~kWs~IA~~l-pgRT~~q~knRW~~llrk~~~~~  119 (267)
                      +++ |+.--|.       ++.+++++||+|||++|+++|++|| ++|..||+++ +|||.+|||.||.++|++.+++.
T Consensus        10 ~~~-~~~pcc~-------K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kg   79 (249)
T PLN03212         10 VSK-KTTPCCT-------KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRG   79 (249)
T ss_pred             CCC-CCCCCcc-------cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccC
Confidence            454 5554443       3588999999999999999999999 6899999998 69999999999999999877654

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.28  E-value=7.3e-12  Score=83.74  Aligned_cols=47  Identities=40%  Similarity=0.837  Sum_probs=44.4

Q ss_pred             CCCCCHHHHHHHHHHHHHcC-CcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 024492           67 RGNFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHLK  113 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~llr  113 (267)
                      +++||++||.+|+.++.+|| .+|..||..|++||..+|++||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998764

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.23  E-value=5e-12  Score=114.27  Aligned_cols=59  Identities=24%  Similarity=0.374  Sum_probs=53.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcC-CcHHHHhhhCC-CCCHHHHHHHHHHhhhHHHhhhhc
Q 024492           63 PDIKRGNFTREEEDTIINLHEMLG-NRWSAIAARLP-GRTDNEIKNVWHTHLKKRLKQKQQ  121 (267)
Q Consensus        63 p~ikkg~WT~EED~~Li~lv~~~G-~kWs~IA~~lp-gRT~~q~knRW~~llrk~~~~~~~  121 (267)
                      |.+.||+||.|||++|+++|++|| .+|..||+.++ ||++++||-||.++|++.+++...
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~f   65 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNF   65 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCC
Confidence            445589999999999999999999 56999999998 999999999999999999887643

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.16  E-value=7.1e-11  Score=77.86  Aligned_cols=44  Identities=34%  Similarity=0.729  Sum_probs=41.8

Q ss_pred             CCCHHHHHHHHHHHHHcC-CcHHHHhhhCCCCCHHHHHHHHHHhh
Q 024492           69 NFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHL  112 (267)
Q Consensus        69 ~WT~EED~~Li~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~ll  112 (267)
                      +||.||+.+|++++.+|| .+|..||+.|++||..+|++||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 99999999999999999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PLN03091 hypothetical protein; Provisional

Probab=99.12  E-value=4.9e-11  Score=115.50  Aligned_cols=57  Identities=19%  Similarity=0.453  Sum_probs=51.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcC-CcHHHHhhhC-CCCCHHHHHHHHHHhhhHHHhhh
Q 024492           63 PDIKRGNFTREEEDTIINLHEMLG-NRWSAIAARL-PGRTDNEIKNVWHTHLKKRLKQK  119 (267)
Q Consensus        63 p~ikkg~WT~EED~~Li~lv~~~G-~kWs~IA~~l-pgRT~~q~knRW~~llrk~~~~~  119 (267)
                      +.++++.||+|||++|+++|++|| ++|..||+.+ +||+++|||.||.++|++.+++.
T Consensus        10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKg   68 (459)
T PLN03091         10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRG   68 (459)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCC
Confidence            578899999999999999999999 5799999988 59999999999999998876544

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.05  E-value=9.4e-11  Score=78.31  Aligned_cols=48  Identities=48%  Similarity=0.941  Sum_probs=44.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccC
Q 024492           14 KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLR   62 (267)
Q Consensus        14 kG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~   62 (267)
                      +++||++||++|..++..||..+|..||..+++ |++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~-rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCC-CCHHHHHHHHHHHcC
Confidence            478999999999999999996699999999997 999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.89  E-value=7.3e-10  Score=72.94  Aligned_cols=45  Identities=49%  Similarity=0.948  Sum_probs=42.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhccc
Q 024492           16 PWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYL   61 (267)
Q Consensus        16 ~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L   61 (267)
                      +||++||+.|+.++..||..+|..||+.+++ |++.+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~-rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCC-CCHHHHHHHHHHhC
Confidence            5999999999999999996699999999998 99999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.88  E-value=2.2e-09  Score=107.71  Aligned_cols=102  Identities=29%  Similarity=0.368  Sum_probs=85.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC-----------------------CCccccchhhcccccccccccchhcccCCCC-CCC
Q 024492           13 KKGPWTPEEDQILINYVKLYGH-----------------------GNWRALPKQAGLLRCGKSCRLRWINYLRPDI-KRG   68 (267)
Q Consensus        13 kkG~WT~EEDe~L~~~V~~~G~-----------------------~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~i-kkg   68 (267)
                      +.+.|+++||+.|...|..|-.                       .-|+.|...+|. |+.+.+..+-++...|.- ++|
T Consensus       307 ~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~-R~~~siy~~~rR~y~~FE~~rg  385 (607)
T KOG0051|consen  307 NLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPY-RDRKSIYHHLRRAYTPFENKRG  385 (607)
T ss_pred             hhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCc-ccchhHHHHHHhcCCccccccC
Confidence            3489999999999999988711                       126788888998 999998774334444433 999


Q ss_pred             CCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhHHH
Q 024492           69 NFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL  116 (267)
Q Consensus        69 ~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk~~  116 (267)
                      .||+||++.|..+|.++|+.|..|++.| ||.+..|+.||+.+++..-
T Consensus       386 ~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~  432 (607)
T KOG0051|consen  386 KWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGS  432 (607)
T ss_pred             CCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhcccc
Confidence            9999999999999999999999999999 9999999999999887653

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.31  E-value=6e-08  Score=96.36  Aligned_cols=97  Identities=28%  Similarity=0.556  Sum_probs=84.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCC--CCCCCCCCHHHHHHHHHHHHHcC----
Q 024492           13 KKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRP--DIKRGNFTREEEDTIINLHEMLG----   86 (267)
Q Consensus        13 kkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p--~ikkg~WT~EED~~Li~lv~~~G----   86 (267)
                      .+|.||++|++.|...+..+|. .|..|.+.++  |-...||+||.+|..+  .+++++|+.||+.+|...+...-    
T Consensus       290 ~~~~wt~e~~~eL~~~~~~~~~-~w~~ig~~~~--rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~~~  366 (512)
T COG5147         290 QRGKWTKEEEQELAKLVVEHGG-SWTEIGKLLG--RMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLEAQ  366 (512)
T ss_pred             hhccCccccccccccccccccc-hhhHhhhhhc--cCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHHHHh
Confidence            4799999999999999999996 9999998777  8899999999999999  68889999999999999887332    


Q ss_pred             ----CcHHHHhhhCCCCCHHHHHHHHHHhh
Q 024492           87 ----NRWSAIAARLPGRTDNEIKNVWHTHL  112 (267)
Q Consensus        87 ----~kWs~IA~~lpgRT~~q~knRW~~ll  112 (267)
                          -.|..|+..++.|....|+..+.++.
T Consensus       367 ~~~~~~~~li~~~~~~~~~~~~~~~~~~~~  396 (512)
T COG5147         367 QSSRILWLLIAQNIRNRLQHHCRDKYGVLI  396 (512)
T ss_pred             hhhhhhHHHHHHhhhccccCCCCCcccccc
Confidence                35999999999888888876655433

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.72  E-value=2.7e-05  Score=77.15  Aligned_cols=55  Identities=29%  Similarity=0.506  Sum_probs=50.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcC-CcHHHHhhhCCCCCHHHHHHHHHHhhhHHHhhh
Q 024492           65 IKRGNFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQK  119 (267)
Q Consensus        65 ikkg~WT~EED~~Li~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~llrk~~~~~  119 (267)
                      ++.|-|+.-||+.|-.+|.+|| +.|++|++.++-.|..||++||..++.+.+++-
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~t   60 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKT   60 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhh
Confidence            5678999999999999999999 779999999999999999999999998877654

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.68  E-value=1.9e-05  Score=76.85  Aligned_cols=49  Identities=22%  Similarity=0.706  Sum_probs=45.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhccc
Q 024492           12 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYL   61 (267)
Q Consensus        12 lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L   61 (267)
                      +-...||++|+-+|+++++.||.+||..||.++|. |++.+|+++|.+++
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGt-Ktkeeck~hy~k~f  118 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGT-KTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcc-cchHHHHHHHHHHH
Confidence            34578999999999999999999999999999998 99999999999876

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.64  E-value=3.6e-05  Score=55.48  Aligned_cols=49  Identities=12%  Similarity=0.233  Sum_probs=43.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCc---cccchhhcccc-cccccccchhccc
Q 024492           13 KKGPWTPEEDQILINYVKLYGHGNW---RALPKQAGLLR-CGKSCRLRWINYL   61 (267)
Q Consensus        13 kkG~WT~EEDe~L~~~V~~~G~~nW---~~IA~~l~~~R-t~kqCr~Rw~n~L   61 (267)
                      ++-.||+||.++++.++..+|.++|   ..|+..+...| +..||+.+++.|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            3568999999999999999998899   99999887546 9999999988764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.60  E-value=0.00011  Score=71.65  Aligned_cols=49  Identities=27%  Similarity=0.462  Sum_probs=44.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcC-CcHHHHhhhCCCCCHHHHHHHHHHhh
Q 024492           64 DIKRGNFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHL  112 (267)
Q Consensus        64 ~ikkg~WT~EED~~Li~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~ll  112 (267)
                      .+-...||.+|+.+|++++..|| ++|..||.++..||..+|+.+|..++
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence            34467899999999999999999 99999999998899999999998765

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.58  E-value=0.00021  Score=63.65  Aligned_cols=102  Identities=22%  Similarity=0.388  Sum_probs=72.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccchhhcc--cccccccccchhccc-CCCC--------------------CCCCCCH
Q 024492           16 PWTPEEDQILINYVKLYGHGNWRALPKQAGL--LRCGKSCRLRWINYL-RPDI--------------------KRGNFTR   72 (267)
Q Consensus        16 ~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~--~Rt~kqCr~Rw~n~L-~p~i--------------------kkg~WT~   72 (267)
                      +|++++|-+|+.+|..-.  +-..|+.-+..  .-|-+.+.+||+..| +|.+                    .+-+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            699999999999998854  55555544322  134466778998876 5543                    2458999


Q ss_pred             HHHHHHHHHHHHcCC---cHHHHhh----hC-CCCCHHHHHHHHHHhhhHHHhhh
Q 024492           73 EEEDTIINLHEMLGN---RWSAIAA----RL-PGRTDNEIKNVWHTHLKKRLKQK  119 (267)
Q Consensus        73 EED~~Li~lv~~~G~---kWs~IA~----~l-pgRT~~q~knRW~~llrk~~~~~  119 (267)
                      +|+++|........+   .+.+|-.    .| ++||++++.++|..+.+.++-..
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~D  133 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLPD  133 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhhc
Confidence            999999997766543   4777732    23 78999999999996655555433

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.52  E-value=0.00025  Score=51.08  Aligned_cols=46  Identities=17%  Similarity=0.299  Sum_probs=39.9

Q ss_pred             CCCCCHHHHHHHHHHHHHcCC-cH---HHHhhhCC-CC-CHHHHHHHHHHhh
Q 024492           67 RGNFTREEEDTIINLHEMLGN-RW---SAIAARLP-GR-TDNEIKNVWHTHL  112 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~G~-kW---s~IA~~lp-gR-T~~q~knRW~~ll  112 (267)
                      +-.||+||..+++++++.||. .|   ..|+..|. .| |..||+.+...+.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            457999999999999999996 99   99999883 35 9999999887654

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=97.25  E-value=0.00027  Score=53.63  Aligned_cols=48  Identities=33%  Similarity=0.533  Sum_probs=34.9

Q ss_pred             CCCCHHHHHHHHHHHHH------cC--C------cHHHHhhhC----CCCCHHHHHHHHHHhhhHH
Q 024492           68 GNFTREEEDTIINLHEM------LG--N------RWSAIAARL----PGRTDNEIKNVWHTHLKKR  115 (267)
Q Consensus        68 g~WT~EED~~Li~lv~~------~G--~------kWs~IA~~l----pgRT~~q~knRW~~llrk~  115 (267)
                      ..||.+|...||+++..      ++  +      -|..||..|    ..||..||+++|.++.+.-
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y   67 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY   67 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            47999999999999877      21  1      399999987    3699999999999866554

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.18  E-value=0.0005  Score=59.17  Aligned_cols=53  Identities=15%  Similarity=0.251  Sum_probs=46.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHcC-------CcHHHHhhhCCCCCHHHHHHHHHHhhhHHHhhh
Q 024492           66 KRGNFTREEEDTIINLHEMLG-------NRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQK  119 (267)
Q Consensus        66 kkg~WT~EED~~Li~lv~~~G-------~kWs~IA~~lpgRT~~q~knRW~~llrk~~~~~  119 (267)
                      ....||.|||.+|-+.|..|-       .-+..++..| +||.-+|.=||+..+|+++...
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~~   62 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEEA   62 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHHH
Confidence            456899999999999998883       2389999999 9999999999999999987644

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=97.05  E-value=0.0011  Score=49.12  Aligned_cols=51  Identities=22%  Similarity=0.478  Sum_probs=32.8

Q ss_pred             CCCCCHHHHHHHHHHHHHcC--------Cc-HHHHhhhCC-CCCHHHHHHHHHHhhhHHHh
Q 024492           67 RGNFTREEEDTIINLHEMLG--------NR-WSAIAARLP-GRTDNEIKNVWHTHLKKRLK  117 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~G--------~k-Ws~IA~~lp-gRT~~q~knRW~~llrk~~~  117 (267)
                      +.+||.|||.+|++.|+.+.        |+ |.+++..-+ .+|-...|+||...|+.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~~   62 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRPR   62 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc
Confidence            45799999999999997652        22 999999776 99999999999998877643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.00  E-value=0.00097  Score=66.79  Aligned_cols=46  Identities=20%  Similarity=0.374  Sum_probs=42.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHh
Q 024492           66 KRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH  111 (267)
Q Consensus        66 kkg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~l  111 (267)
                      .++.||.+|.-+|++.+.+||-.|.+||.++.+||..||--++..+
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            3578999999999999999999999999999999999999888764

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.86  E-value=0.0012  Score=65.17  Aligned_cols=44  Identities=20%  Similarity=0.341  Sum_probs=41.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHh
Q 024492           68 GNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH  111 (267)
Q Consensus        68 g~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~l  111 (267)
                      .+||.+|..+|++.++.||..|.+||.++..||..||--||.++
T Consensus       280 k~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         280 KNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            48999999999999999999999999999999999999988765

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=96.73  E-value=0.0055  Score=45.67  Aligned_cols=49  Identities=31%  Similarity=0.549  Sum_probs=40.6

Q ss_pred             CCCCCHHHHHHHHHHHHHcC----C-------------cHHHHhhhC-----CCCCHHHHHHHHHHhhhHH
Q 024492           67 RGNFTREEEDTIINLHEMLG----N-------------RWSAIAARL-----PGRTDNEIKNVWHTHLKKR  115 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~G----~-------------kWs~IA~~l-----pgRT~~q~knRW~~llrk~  115 (267)
                      +..||.+|.+.|++++.+|.    +             -|..|+..|     +.||..+|+.+|..+...-
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~   72 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA   72 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence            45799999999999998873    1             299999876     3599999999999877553

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.58  E-value=0.00087  Score=66.04  Aligned_cols=46  Identities=20%  Similarity=0.685  Sum_probs=42.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcc
Q 024492           13 KKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY   60 (267)
Q Consensus        13 kkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~   60 (267)
                      ....||.+|..+|.+.|+.||. +|.+||+++|+ |+..||..|+.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVgt-Kt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARHVGT-KTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhh-hHHHHHHHhCC-CCHHHHHHHHHcC
Confidence            5569999999999999999996 99999999998 9999999998764

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.52  E-value=0.0012  Score=66.16  Aligned_cols=46  Identities=22%  Similarity=0.733  Sum_probs=42.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcc
Q 024492           13 KKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY   60 (267)
Q Consensus        13 kkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~   60 (267)
                      -++.||.+|..+|+++|+.||. +|.+||.+++. |+..||..++.+.
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg~-ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGD-DWNKVADHVGT-KSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcc-cHHHHHhccCC-CCHHHHHHHHHhc
Confidence            4689999999999999999996 99999999998 9999999998764

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.44  E-value=0.0037  Score=54.47  Aligned_cols=52  Identities=13%  Similarity=0.294  Sum_probs=44.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCc-------HHHHhhhCCCCCHHHHHHHHHHhhhHHHhh
Q 024492           66 KRGNFTREEEDTIINLHEMLGNR-------WSAIAARLPGRTDNEIKNVWHTHLKKRLKQ  118 (267)
Q Consensus        66 kkg~WT~EED~~Li~lv~~~G~k-------Ws~IA~~lpgRT~~q~knRW~~llrk~~~~  118 (267)
                      +...||.|+|.+|-+.|..|+..       ...++..| +||.-+|.-||+..+|+++..
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Yee   62 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQE   62 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHHH
Confidence            46789999999999999888732       67777888 999999999999999987653

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.30  E-value=0.0011  Score=48.93  Aligned_cols=52  Identities=29%  Similarity=0.456  Sum_probs=33.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC--------CCccccchhhcccccccccccchhcccCCCC
Q 024492           14 KGPWTPEEDQILINYVKLYGH--------GNWRALPKQAGLLRCGKSCRLRWINYLRPDI   65 (267)
Q Consensus        14 kG~WT~EEDe~L~~~V~~~G~--------~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~i   65 (267)
                      +-+||+|||+.|+.+|..+..        .=|..+++..++.++-.+-|+||...|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            468999999999999976632        2399999888855888889999999997653

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.09  E-value=0.0014  Score=56.45  Aligned_cols=50  Identities=26%  Similarity=0.538  Sum_probs=41.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC------CCccccchhhcccccccccccchhcccCC
Q 024492           12 LKKGPWTPEEDQILINYVKLYGH------GNWRALPKQAGLLRCGKSCRLRWINYLRP   63 (267)
Q Consensus        12 lkkG~WT~EEDe~L~~~V~~~G~------~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p   63 (267)
                      .+...||.|||.+|...|-+|-.      .-+..+++.++  ||+--|..||+.+++.
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK   57 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence            36679999999999999998822      14677888787  9999999999999874

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=95.90  E-value=0.053  Score=58.84  Aligned_cols=103  Identities=16%  Similarity=0.325  Sum_probs=76.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccc----------------------------------------
Q 024492           15 GPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCR----------------------------------------   54 (267)
Q Consensus        15 G~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr----------------------------------------   54 (267)
                      +.|+.-+=..++.+..+||-.+-..||..+.+ ++...++                                        
T Consensus       825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~-k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~  903 (1033)
T PLN03142        825 STWSRRDFNAFIRACEKYGRNDIKSIASEMEG-KTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAI  903 (1033)
T ss_pred             CcccHHHHHHHHHHHHHhCHhHHHHHHHHhcC-CCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46888888889999999998888888888865 5554333                                        


Q ss_pred             --------cchhccc--CCCCCCCCCCHHHHHHHHHHHHHcC-CcHHHHhhh------------CCCCCHHHHHHHHHHh
Q 024492           55 --------LRWINYL--RPDIKRGNFTREEEDTIINLHEMLG-NRWSAIAAR------------LPGRTDNEIKNVWHTH  111 (267)
Q Consensus        55 --------~Rw~n~L--~p~ikkg~WT~EED~~Li~lv~~~G-~kWs~IA~~------------lpgRT~~q~knRW~~l  111 (267)
                              .-|...-  -+..++..||.|||..|+-.+.+|| .+|.+|-..            +..||+..|..|-.++
T Consensus       904 ~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l  983 (1033)
T PLN03142        904 GKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL  983 (1033)
T ss_pred             HHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence                    2221110  1233445699999999999999999 789999433            2489999999999999


Q ss_pred             hhHHHhh
Q 024492          112 LKKRLKQ  118 (267)
Q Consensus       112 lrk~~~~  118 (267)
                      ++-..+.
T Consensus       984 ~~~~~~e  990 (1033)
T PLN03142        984 IRLIEKE  990 (1033)
T ss_pred             HHHHHHH
Confidence            9875444

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.52  E-value=0.016  Score=55.09  Aligned_cols=47  Identities=26%  Similarity=0.442  Sum_probs=42.7

Q ss_pred             CCCCCHHHHHHHHHHHHHcC-CcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 024492           67 RGNFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHLK  113 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~llr  113 (267)
                      -..|+..|+-+|++....+| ++|.-||.++..|+..+||.+|..+.-
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            34799999999999999999 999999999988999999999876543

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.23  E-value=0.0065  Score=57.70  Aligned_cols=48  Identities=21%  Similarity=0.554  Sum_probs=44.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccC
Q 024492           14 KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLR   62 (267)
Q Consensus        14 kG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~   62 (267)
                      --.|+++|+-+|++...-.|.+||.-||..+|. |....|+.+|..++.
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGs-r~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGS-RAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhh-hhhHHHHHHHHHHHh
Confidence            347999999999999999999999999999997 999999999998775

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=94.89  E-value=0.0047  Score=46.76  Aligned_cols=48  Identities=29%  Similarity=0.620  Sum_probs=32.6

Q ss_pred             CCCCCHHHHHHHHHHHHH--h----C--C-----CCccccchhh---cccccccccccchhccc
Q 024492           14 KGPWTPEEDQILINYVKL--Y----G--H-----GNWRALPKQA---GLLRCGKSCRLRWINYL   61 (267)
Q Consensus        14 kG~WT~EEDe~L~~~V~~--~----G--~-----~nW~~IA~~l---~~~Rt~kqCr~Rw~n~L   61 (267)
                      +-.||.+|...|+.++..  +    +  .     .-|..||..|   |..|++.||+.||.+..
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~   64 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK   64 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            357999999999999877  2    1  1     1499999885   44599999999998743

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=94.67  E-value=0.027  Score=54.71  Aligned_cols=86  Identities=21%  Similarity=0.383  Sum_probs=64.8

Q ss_pred             CccccchhhcccccccccccchhcccCCC-------------------------CCCCCCCHHHHHHHHHHHHHcCCcHH
Q 024492           36 NWRALPKQAGLLRCGKSCRLRWINYLRPD-------------------------IKRGNFTREEEDTIINLHEMLGNRWS   90 (267)
Q Consensus        36 nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~-------------------------ikkg~WT~EED~~Li~lv~~~G~kWs   90 (267)
                      .|.-++=..+. |...-...+|....++.                         ++...||+||-+.|++|.+.|.-+|-
T Consensus        75 ~W~w~pFtn~a-RkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~  153 (445)
T KOG2656|consen   75 PWKWVPFTNSA-RKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF  153 (445)
T ss_pred             CceeeccCCcc-ccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence            56666544444 66666666676653321                         12246999999999999999999999


Q ss_pred             HHhhh-----CCC-CCHHHHHHHHHHhhhHHHhhhhcc
Q 024492           91 AIAAR-----LPG-RTDNEIKNVWHTHLKKRLKQKQQQ  122 (267)
Q Consensus        91 ~IA~~-----lpg-RT~~q~knRW~~llrk~~~~~~~~  122 (267)
                      .||..     ++. ||-.++|.||+...++-++.+.+.
T Consensus       154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~s  191 (445)
T KOG2656|consen  154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAPS  191 (445)
T ss_pred             EEeeccchhhccccccHHHHHHHHHHHHHHHHHccCCC
Confidence            99987     555 999999999999999887765544

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=94.50  E-value=0.0096  Score=51.88  Aligned_cols=50  Identities=22%  Similarity=0.450  Sum_probs=38.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCC------ccccchhhcccccccccccchhcccC
Q 024492           11 GLKKGPWTPEEDQILINYVKLYGHGN------WRALPKQAGLLRCGKSCRLRWINYLR   62 (267)
Q Consensus        11 ~lkkG~WT~EEDe~L~~~V~~~G~~n------W~~IA~~l~~~Rt~kqCr~Rw~n~L~   62 (267)
                      ..+...||.|||.+|...|-.|+...      ...++..+.  |+...|..||+.+++
T Consensus         2 k~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vr   57 (170)
T PRK13923          2 KTRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVR   57 (170)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHH
Confidence            35778999999999999999886532      344445555  999999999977665

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=94.04  E-value=0.018  Score=42.87  Aligned_cols=49  Identities=22%  Similarity=0.400  Sum_probs=39.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC----------------CCccccchhh----cccccccccccchhccc
Q 024492           13 KKGPWTPEEDQILINYVKLYGH----------------GNWRALPKQA----GLLRCGKSCRLRWINYL   61 (267)
Q Consensus        13 kkG~WT~EEDe~L~~~V~~~G~----------------~nW~~IA~~l----~~~Rt~kqCr~Rw~n~L   61 (267)
                      ++..||++|.+.|+.+|.+|..                .-|..|+..+    |+.|+..||+.+|.+..
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            4678999999999999998822                1499999874    22499999999998854

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=93.85  E-value=0.16  Score=38.79  Aligned_cols=46  Identities=33%  Similarity=0.560  Sum_probs=35.7

Q ss_pred             CCCHHHHHHHHHHHHHc---CC----------cHHHHhhhC---CC--CCHHHHHHHHHHhhhH
Q 024492           69 NFTREEEDTIINLHEML---GN----------RWSAIAARL---PG--RTDNEIKNVWHTHLKK  114 (267)
Q Consensus        69 ~WT~EED~~Li~lv~~~---G~----------kWs~IA~~l---pg--RT~~q~knRW~~llrk  114 (267)
                      .||+++++.|++++.+.   |+          .|..|+..|   +|  .|..||++||..+.+.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~   64 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD   64 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence            49999999999998543   22          299999877   33  5789999999875554

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=93.71  E-value=0.15  Score=48.30  Aligned_cols=54  Identities=24%  Similarity=0.362  Sum_probs=42.1

Q ss_pred             CCCCCHHHHHHHHHHHHHc----------CCcHHHHhhhC----CCCCHHHHHHHHHHhhhHHHhhhh
Q 024492           67 RGNFTREEEDTIINLHEML----------GNRWSAIAARL----PGRTDNEIKNVWHTHLKKRLKQKQ  120 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~----------G~kWs~IA~~l----pgRT~~q~knRW~~llrk~~~~~~  120 (267)
                      ...|+.+|-..||++..+.          +.-|..||+.+    .-||+.+||++|.++.++..+.+.
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~  121 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKA  121 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            3689999999999998653          23499999965    349999999999987776544433

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=93.12  E-value=0.24  Score=40.76  Aligned_cols=52  Identities=21%  Similarity=0.377  Sum_probs=41.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCC----cHHHHhhhC------------CCCCHHHHHHHHHHhhhHH
Q 024492           64 DIKRGNFTREEEDTIINLHEMLGN----RWSAIAARL------------PGRTDNEIKNVWHTHLKKR  115 (267)
Q Consensus        64 ~ikkg~WT~EED~~Li~lv~~~G~----kWs~IA~~l------------pgRT~~q~knRW~~llrk~  115 (267)
                      ..++..||.+||.-|+-++.+||-    .|.+|-..+            ..||+..|..|-.++++-.
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI  113 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence            556789999999999999999995    799886542            3799999999999988754

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=91.42  E-value=0.31  Score=47.55  Aligned_cols=47  Identities=19%  Similarity=0.332  Sum_probs=43.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492           68 GNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKK  114 (267)
Q Consensus        68 g~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk  114 (267)
                      -+||.+|-++..++..++|..++.|+..+|.|...|||.+|.+--|+
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~  412 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV  412 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence            37999999999999999999999999999999999999999875544

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=88.32  E-value=1.5  Score=29.92  Aligned_cols=41  Identities=24%  Similarity=0.322  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 024492           72 REEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLK  113 (267)
Q Consensus        72 ~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llr  113 (267)
                      ++++..++.++-..|-.|.+||..+ |.|...|+.+.+..++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~   52 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK   52 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence            4678889999999999999999999 9999999998776544

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>smart00595 MADF subfamily of SANT domain

Probab=87.07  E-value=1.2  Score=33.48  Aligned_cols=25  Identities=32%  Similarity=0.640  Sum_probs=22.0

Q ss_pred             HHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492           89 WSAIAARLPGRTDNEIKNVWHTHLKK  114 (267)
Q Consensus        89 Ws~IA~~lpgRT~~q~knRW~~llrk  114 (267)
                      |.+||..| |-|..+|+.+|+++...
T Consensus        30 W~~Ia~~l-~~~~~~~~~kw~~LR~~   54 (89)
T smart00595       30 WEEIAEEL-GLSVEECKKRWKNLRDR   54 (89)
T ss_pred             HHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence            99999999 55999999999987644

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=83.32  E-value=2.9  Score=41.82  Aligned_cols=49  Identities=18%  Similarity=0.289  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhHH
Q 024492           67 RGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKR  115 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk~  115 (267)
                      ...||.||-.++.+++..||.++.+|-+.||.|+-..|...|...-+.+
T Consensus       187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~  235 (534)
T KOG1194|consen  187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTR  235 (534)
T ss_pred             cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHh
Confidence            4579999999999999999999999999999999999999888765543

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=82.27  E-value=1  Score=36.97  Aligned_cols=34  Identities=32%  Similarity=0.630  Sum_probs=28.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC---CCccccchhh
Q 024492           11 GLKKGPWTPEEDQILINYVKLYGH---GNWRALPKQA   44 (267)
Q Consensus        11 ~lkkG~WT~EEDe~L~~~V~~~G~---~nW~~IA~~l   44 (267)
                      +.++..||.+||.-|+-++.+||.   +.|..|-..+
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~I   82 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEI   82 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence            567889999999999999999999   8999997765

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=80.18  E-value=1.2  Score=43.52  Aligned_cols=45  Identities=13%  Similarity=0.276  Sum_probs=41.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcc
Q 024492           14 KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY   60 (267)
Q Consensus        14 kG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~   60 (267)
                      --+||.+|-+++..+....|. ++..|+..+|. |..+|+..+|.+-
T Consensus       365 ~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP~-R~RkqIKaKfi~E  409 (507)
T COG5118         365 ALRWSKKEIEKFYKALSIWGT-DFSLISSLFPN-RERKQIKAKFIKE  409 (507)
T ss_pred             CCcccHHHHHHHHHHHHHhcc-hHHHHHHhcCc-hhHHHHHHHHHHH
Confidence            358999999999999999997 99999999999 9999999998874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	267
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		2e-22
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		7e-22
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		1e-21
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		1e-21
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		1e-21
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		2e-16
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		1e-11
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		1e-07
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		1e-07
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		2e-07
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		3e-07
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		4e-07
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		5e-07

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Query: 12  LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFT 71
           L KGPWT EEDQ +I  VK YG   W  + K     R GK CR RW N+L P++K+ ++T
Sbjct: 5   LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSSWT 63
Query: 72  REEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 110
            EE+  I   H++LGNRW+ IA  LPGRTDN +KN W++
Sbjct: 64  EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNS 102

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  100 bits (250), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Query: 12  LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFT 71
           L KGPWT EEDQ +I +V+ YG   W  + K     R GK CR RW N+L P++K+ ++T
Sbjct: 25  LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 83
Query: 72  REEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 110
            EE+  I   H+ LGNRW+ IA  LPGRTDN +KN W++
Sbjct: 84  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNS 122

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 12  LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFT 71
           L KGPWT EEDQ +I  V+ YG   W  + K     R GK CR RW N+L P++K+ ++T
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72  REEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 110
            EE+  I   H+ LGNRW+ IA  LPGRTDN IKN W++
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 10  MG-LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLL--RCGKSCRLRWINYLRPDIK 66
           MG L K  WT EED+ L   V+  G  +W+ +   A  L  R    C+ RW   L P++ 
Sbjct: 1   MGHLGKTRWTREEDEKLKKLVEQNGTDDWKVI---ANYLPNRTDVQCQHRWQKVLNPELI 57
Query: 67  RGNFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTH 111
           +G +T+EE+  +I L +  G  RWS IA  L GR   + +  WH H
Sbjct: 58  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 103

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 12  LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFT 71
           L KGPWT EEDQ +I  V+ YG   W  + K     R GK CR RW N+L P++K+ ++T
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72  REEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 110
            EE+  I   H+ LGNRW+ IA  LPGRTDN IKN W++
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 60/99 (60%), Gaps = 5/99 (5%)
Query: 14  KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLL--RCGKSCRLRWINYLRPDIKRGNFT 71
           KGP+T  ED ++  YVK  G  NW   P+    L  R  K CR RW N+L P + +  +T
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 72  REEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 110
            EE++TI   +  LG++WS IA  +PGRTDN IKN W++
Sbjct: 59  PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNS 97

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 13  KKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLL--RCGKSCRLRWINYLRPDIKRGNF 70
           KK  +TPEED++L   V  +G  +W+ +   A     R  + CR RW NYL P I    +
Sbjct: 10  KKQKFTPEEDEMLKRAVAQHG-SDWKMI---AATFPNRNARQCRDRWKNYLAPSISHTPW 65
Query: 71  TREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 110
           T EE+  ++   +  G +W+ IA   PGRTD  IKN W T
Sbjct: 66  TAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 65  IKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 110
           +K+ ++T EE+  I   H+ LGNRW+ IA  LPGRTDN IKN W++
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 46

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 64  DIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 110
           ++K+ ++T EE+  +   H+ LGNRW+ IA  LPGRTDN IKN W++
Sbjct: 2   EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 48

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPD 64
          L KGPWT EEDQ LI  V+ YG   W  + K     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 14  KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTRE 73
           K  +T EED  L   V  YG  +W  +  Q  + R  + CR RW NY+ P ++   ++ E
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRIS-QLMITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 74  EEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVW 108
           E+  +   +   G +W+ I+  L  R+DN I+N W
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPD 64
          L KGPWT EEDQ +I  V+ YG   W  + K     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPD 64
          L KGPWT EEDQ +I  V+ YG   W  + K     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	267
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	3e-73
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	1e-72
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	4e-04
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	4e-71
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	3e-19
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	6e-62
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-59
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	1e-37
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	4e-58
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	4e-31
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	4e-27
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	4e-23
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	2e-16
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	9e-07
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	1e-11
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	2e-06
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-10
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-09
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	2e-09
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	7e-09
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	7e-06
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	1e-08
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	1e-08
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	1e-08
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	3e-08
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	1e-05
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	3e-08
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	2e-07
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	5e-04
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	2e-06
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	9e-06
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	1e-05
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	2e-05
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	2e-05
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	1e-04
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	5e-04

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  219 bits (559), Expect = 3e-73
 Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 1/124 (0%)

Query: 14  KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTRE 73
           KGP+T  ED ++  YVK  G  NW  +       R  K CR RW N+L P + +  +T E
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 74  EEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQQQEPVINNHSNAN 133
           E++TI   +  LG++WS IA  +PGRTDN IKN W++ + KR+      + ++    +  
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKK 120

Query: 134 HVTA 137
              A
Sbjct: 121 RKAA 124

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  217 bits (554), Expect = 1e-72
 Identities = 50/105 (47%), Positives = 69/105 (65%), Gaps = 1/105 (0%)

Query: 12  LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFT 71
           L KGPWT EEDQ +I  V+ YG   W  + K     R GK CR RW N+L P++K+ ++T
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 60

Query: 72  REEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 116
            EE+  I   H+ LGNRW+ IA  LPGRTDN IKN W++ +++++
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 64  DIKRGNFTREEEDTIINLHEMLGNR-WSAIAARLPGRTDNEIKNVWHTHLKKRLK 117
           ++ +G +T+EE+  +I L +  G + WS IA  L GR   + +  WH HL   +K
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVK 55

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  213 bits (545), Expect = 4e-71
 Identities = 49/106 (46%), Positives = 70/106 (66%), Gaps = 1/106 (0%)

Query: 11  GLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNF 70
            L KGPWT EEDQ +I +V+ YG   W  + K     R GK CR RW N+L P++K+ ++
Sbjct: 24  ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 82

Query: 71  TREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 116
           T EE+  I   H+ LGNRW+ IA  LPGRTDN +KN W++ +++++
Sbjct: 83  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score = 80.3 bits (199), Expect = 3e-19
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 48  RCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNR-WSAIAARLPGRTDNEIKN 106
           R    C+ RW   L P++ +G +T+EE+  +I   +  G + WS IA  L GR   + + 
Sbjct: 8   RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRE 67

Query: 107 VWHTHLKKRLK 117
            WH HL   +K
Sbjct: 68  RWHNHLNPEVK 78

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  190 bits (484), Expect = 6e-62
 Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 2/124 (1%)

Query: 8   EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKR 67
                KK  +TPEED++L   V  +G  +W+ +       R  + CR RW NYL P I  
Sbjct: 5   NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISH 62

Query: 68  GNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQQQEPVIN 127
             +T EE+  ++   +  G +W+ IA   PGRTD  IKN W T   K    + QQ    +
Sbjct: 63  TPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQMLEHH 122

Query: 128 NHSN 131
           +H +
Sbjct: 123 HHHH 126

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  184 bits (470), Expect = 2e-59
 Identities = 50/106 (47%), Positives = 69/106 (65%), Gaps = 1/106 (0%)

Query: 11  GLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNF 70
            L KGPWT EEDQ +I  V+ YG   W  + K     R GK CR RW N+L P++K+ ++
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 113

Query: 71  TREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 116
           T EE+  I   H+ LGNRW+ IA  LPGRTDN IKN W++ +++++
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  129 bits (326), Expect = 1e-37
 Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 2/108 (1%)

Query: 11  GLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNF 70
            L K  WT EED+ L   V+  G  +W+ +       R    C+ RW   L P++ +G +
Sbjct: 3   HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPW 61

Query: 71  TREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHLKKRLK 117
           T+EE+  +I L +  G  RWS IA  L GR   + +  WH HL   +K
Sbjct: 62  TKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVK 109

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  179 bits (457), Expect = 4e-58
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 1/107 (0%)

Query: 14  KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTRE 73
           K  +T EED  L   V  YG  +W  + +     R  + CR RW NY+ P ++   ++ E
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPE 59

Query: 74  EEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQ 120
           E+  +   +   G +W+ I+  L  R+DN I+N W    + R K ++
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQK 106

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score =  109 bits (274), Expect = 4e-31
 Identities = 27/53 (50%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 12 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPD 64
          L KGPWT EEDQ LI  V+ YG   W  + K     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 98.9 bits (247), Expect = 4e-27
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 11 GLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNF 70
            K G W   ED+IL   V  YG   W  +       +  K C+ RW  +L P IK+  +
Sbjct: 6  SGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWYEWLDPSIKKTEW 64

Query: 71 TREEE 75
          +    
Sbjct: 65 SGPSS 69

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 88.0 bits (219), Expect = 4e-23
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 12 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPD 64
          L K  WT EED+ L   V+  G  +W+ +       R    C+ RW   L P+
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 70.7 bits (174), Expect = 2e-16
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 12 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLL--RCGKSCRLRWINYLRPDIK 66
            K  WT EED+ L   V+ +G  +W+ L   A     R  + C+ RW+  L     
Sbjct: 6  SGKVKWTHEEDEQLRALVRQFGQQDWKFL---ASHFPNRTDQQCQYRWLRVLSGPSS 59

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 44.1 bits (105), Expect = 9e-07
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 62  RPDIKRGNFTREEEDTIINLHEMLGNR-WSAIAARLPGRTDNEIKNVWHTHLK 113
                +  +T EE++ +  L    G + W  +A+  P RTD + +  W   L 
Sbjct: 3   SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 57.3 bits (139), Expect = 1e-11
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 13 KKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLL-RCGKSCRLRWINYLR 62
          K+  W  EED+ L + V+ YG GNW  +        R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 66  KRGNFTREEEDTIINLHEMLGN-RWSAIAARLP--GRTDNEIKNVWHTHLKKR 115
           KR  +  EE+  + +     G   WS I        RT   +K+ W T  K +
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 55.2 bits (133), Expect = 1e-10
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 12 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGN 69
           KK  W+ EE++ L++  KL     WR +    G  R    C   +   L    +R +
Sbjct: 7  GKKTEWSREEEEKLLHLAKLMPT-QWRTIAPIIG--RTAAQCLEHYEFLLDKAAQRDS 61

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 52.1 bits (125), Expect = 2e-09
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 65  IKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQQQEP 124
            K+  ++REEE+ +++L +++  +W  I A + GRT  +    +   L K  ++      
Sbjct: 7   GKKTEWSREEEEKLLHLAKLMPTQWRTI-APIIGRTAAQCLEHYEFLLDKAAQRDSGPSS 65

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 53.2 bits (127), Expect = 2e-09
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 9/92 (9%)

Query: 13  KKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLL---RCGKSCRLRWINYLR-----PD 64
            + P++  E + L+  V+  G G WR +   A      R     + +W   +      P 
Sbjct: 12  IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ 71

Query: 65  IKRGNFTREE-EDTIINLHEMLGNRWSAIAAR 95
            +RG    +E  + ++N H     +      +
Sbjct: 72  QRRGEPVPQELLNRVLNAHGYWTQQQMQQLQQ 103

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 50.0 bits (120), Expect = 7e-09
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 13 KKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLL-RCGKSCRLRWINYLRPDI 65
          KK  WT EE + +   V+ YG GNW A+ K    + R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 41.5 bits (98), Expect = 7e-06
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 66  KRGNFTREEEDTIINLHEMLGN-RWSAIAARLP--GRTDNEIKNVWHTHLKKRL 116
           K+  +T EE + +    +  G   W+AI+   P   RT   IK+ W T  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 50.4 bits (120), Expect = 1e-08
 Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 16 PWTPEEDQILINYVKLYGHGNWRALPKQAGLL---RCGKSCRLRWINYLR-----PDIKR 67
          P++  E + L+  V+  G G WR +  +A      R     + +W   +      P  +R
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 68 GNFTREEE-DTIINLHEMLGNR 88
          G    ++  D ++  H     +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 51.3 bits (122), Expect = 1e-08
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 13  KKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLL---RCGKSCRLRWINYLR-----PD 64
            + P+T  E ++L+  V+  G G WR +  +A      R     + +W   +      P 
Sbjct: 30  IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQ 89

Query: 65  IKRGNFTREE-EDTIINLHEMLGNRWSA 91
            +RG    +E  D ++          S 
Sbjct: 90  QRRGAPVPQELLDRVLAAQAYWSVDSSG 117

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 49.3 bits (118), Expect = 1e-08
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 13 KKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLL-RCGKSCRLRWINYLRPDI 65
          KK  WT EE + +   V+ YG GNW A+ K    + R     + RW    R  +
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 39.3 bits (92), Expect = 7e-05
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 66  KRGNFTREEEDTIINLHEMLGN-RWSAIAARLP--GRTDNEIKNVWHTHLKKRL 116
           K+  +T EE + +    +  G   W+AI+   P   RT   IK+ W T  +  +
Sbjct: 10  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 3e-08
 Identities = 39/256 (15%), Positives = 73/256 (28%), Gaps = 78/256 (30%)

Query: 27  NYVKLYGHGNWRALPKQAGLLRCGKSC-----------------RLRWINYLRPDIKRGN 69
             V + G           G    GK+                  ++ W+N         N
Sbjct: 151 KNVLIDG---------VLG---SGKTWVALDVCLSYKVQCKMDFKIFWLNL-------KN 191

Query: 70  FTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH-LKKRLKQKQQQEP---- 124
                 +T++   EML      I      R+D+        H ++  L++  + +P    
Sbjct: 192 --CNSPETVL---EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 125 --VINNHSNANHVTARSEICSGASTPDRQDSTT--TSSDMSSVTSSAANNACVKTEPSSS 180
             V+ N  NA    A +  C               T+     VT   +      T   S 
Sbjct: 247 LLVLLNVQNAKAWNAFNLSC-----------KILLTTRF-KQVTDFLSAA---TTTHISL 291

Query: 181 ENNHDSLVEIDENFWTEVLSAENSGISIEDSNDRFSAVGSADPLSIVEFQSSLDDFRPGS 240
           +++  +L   DE    + L  +      +D       + + +P  +     S+ D     
Sbjct: 292 DHHSMTLTP-DE---VKSLLLKYLDCRPQDL--PREVL-TTNPRRLSIIAESIRDGL--- 341

Query: 241 TLCDNTDFWFNLFTKA 256
                 D W ++    
Sbjct: 342 ---ATWDNWKHVNCDK 354

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 48.6 bits (116), Expect = 3e-08
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 13 KKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLL-RCGKSCRLRWINYLRPDIKRGNFT 71
          K+  W  EED+ L + V+ YG GNW  +        R     + RW        K    +
Sbjct: 9  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK----KLKLIS 64

Query: 72 REEED 76
           + ED
Sbjct: 65 SDSED 69

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 66  KRGNFTREEEDTIINLHEMLGN-RWSAIAARLP--GRTDNEIKNVWHTHLKKRLKQKQQQ 122
           KR  +  EE+  + +     G   WS I        RT   +K+ W T  K +L     +
Sbjct: 9   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68

Query: 123 E 123
           +
Sbjct: 69  D 69

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 49.8 bits (118), Expect = 3e-08
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 9/87 (10%)

Query: 13  KKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLL---RCGKSCRLRWINYLR-----PD 64
            + P++  E + L+  V+  G G WR +  +A      R     + +W   +      P 
Sbjct: 16  IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ 75

Query: 65  IKRGNFT-REEEDTIINLHEMLGNRWS 90
            +RG    ++  D ++  H     +  
Sbjct: 76  QRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 13 KKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYL 61
              WT +E+  L+  V   G GNW+ +  Q    +  + C   ++ Y 
Sbjct: 7  GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYF 54

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 66  KRGNFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHL 112
              ++T +EE  ++      G   W  +A ++  +T  E +  +  + 
Sbjct: 7   GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF 54

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 12 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
               W  +E+ +LI+  +  G GNW  +    G  R  + CR  ++  
Sbjct: 7  GFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 45.0 bits (105), Expect = 9e-06
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 63  PDIKRGNFTREEEDTIINLHEMLGNR------WSAIAARLPGRTDNEIKNVWHTHLKKRL 116
           P   + +FT EE++ I+++      R      +  I+  +P  T N I++ +  +L KRL
Sbjct: 4   PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 63

Query: 117 KQKQQQEP 124
           +   + + 
Sbjct: 64  EYVYEVDK 71

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 22/167 (13%), Positives = 52/167 (31%), Gaps = 15/167 (8%)

Query: 13  KKGPWTPEEDQILINYVKL-----YGHGNWRALPKQAGLL--RCGKSCRLRWINYLRPDI 65
            K  +T EED+ +++ V+        H  +  +   +  +    G S R R+  YL   +
Sbjct: 7   NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEI---SHYVPNHTGNSIRHRFRVYLSKRL 63

Query: 66  KRGNFTREEEDTIINLHEMLGNRW--SAIAARLPGRTDNEIKNVWHTHLKKRLKQKQQQE 123
           +      +    + +     GN      +   +  +   +        +KK+  +   Q 
Sbjct: 64  EYVYEVDKFGKLVRDDD---GNLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQI 120

Query: 124 PVINNHSNANHVTARSEICSGASTPDRQDSTTTSSDMSSVTSSAANN 170
                 S        + I     T D      +  + ++  + +   
Sbjct: 121 DPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRG 167

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 54  RLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLK 113
                +  R ++    +T EE  T        G  WSAIA  +  +T ++ KN +  + K
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNY-K 61

Query: 114 KRLKQKQ 120
           KR    +
Sbjct: 62  KRQNLDE 68

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 13 KKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRG 68
            G +TPEE + L      +G  +W  +    G  R   S + R    ++     G
Sbjct: 22 HVGKYTPEEIEKLKELRIKHG-NDWATIGAALG--RSASSVKDRC-RLMKDTCNTG 73

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 13/62 (20%), Positives = 26/62 (41%)

Query: 62  RPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQQ 121
                   +T EE++         G RW+ I+  +  RT  ++K+    + K ++K    
Sbjct: 4   GSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLD 63

Query: 122 QE 123
           +E
Sbjct: 64  KE 65

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 37.2 bits (86), Expect = 5e-04
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 8  EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
           K       WT +E  +L+  +++Y   +W  + +  G  R    C L ++  
Sbjct: 12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	267
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	100.0
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	100.0
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	100.0
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.86
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.85
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.78
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.76
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.74
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.73
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.73
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.7
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.7
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.7
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.7
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.68
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.68
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.67
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.66
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.66
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.65
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.64
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.63
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.62
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.61
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.6
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.6
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.57
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.57
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.57
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.56
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.34
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.54
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.5
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.49
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.44
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.44
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.44
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.44
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.42
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.41
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.39
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.38
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.36
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.36
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.35
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.34
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.34
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.33
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.33
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.98
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.28
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.25
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	99.09
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.04
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.97
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.96
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.83
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.75
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.69
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.68
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.52
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.48
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.41
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.4
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.27
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.23
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.18
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.15
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.41
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.1
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.07
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	97.89
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.75
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.59
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.56
2crg_A	70	Metastasis associated protein MTA3; transcription	97.51
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.36
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.28
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.21
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	96.7
2crg_A	70	Metastasis associated protein MTA3; transcription	96.7
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.6
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.57
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	95.98
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	94.43
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	94.53
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	94.43
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	94.36
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	93.93
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	92.38
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	87.98
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	82.76
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	82.06

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=1.1e-35  Score=234.83  Aligned_cols=105  Identities=48%  Similarity=0.909  Sum_probs=99.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCCcHH
Q 024492           11 GLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWS   90 (267)
Q Consensus        11 ~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~kWs   90 (267)
                      ++++|+||+|||++|+.+|.+||..+|..||+.+++ |+++||++||.++|+|.+++|+||+|||++|+++|.+||++|+
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcC-CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            478999999999999999999998899999999988 9999999999999999999999999999999999999999999


Q ss_pred             HHhhhCCCCCHHHHHHHHHHhhhHHH
Q 024492           91 AIAARLPGRTDNEIKNVWHTHLKKRL  116 (267)
Q Consensus        91 ~IA~~lpgRT~~q~knRW~~llrk~~  116 (267)
                      .||++|||||+++|++||+.++++++
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999998763

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=2.8e-35  Score=234.04  Aligned_cols=103  Identities=31%  Similarity=0.561  Sum_probs=99.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024492           14 KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIA   93 (267)
Q Consensus        14 kG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~kWs~IA   93 (267)
                      ||+||+|||++|+.+|..||..+|..||..||+ |+++||++||.++|+|.+++|+||.|||++|+++|.+||++|+.||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTT-SCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCC-CCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            689999999999999999998899999999998 9999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHhhhHHHh
Q 024492           94 ARLPGRTDNEIKNVWHTHLKKRLK  117 (267)
Q Consensus        94 ~~lpgRT~~q~knRW~~llrk~~~  117 (267)
                      ++|||||+++|++||+.++++..+
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~~  103 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRAK  103 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHHH
Confidence            999999999999999999988654

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=100.00  E-value=7.8e-35  Score=239.07  Aligned_cols=107  Identities=41%  Similarity=0.752  Sum_probs=102.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024492           14 KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIA   93 (267)
Q Consensus        14 kG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~kWs~IA   93 (267)
                      ||+||+|||++|+.+|..||..+|..||..|++ |+++||++||.++|+|.+++|+||.|||++|+++|.+||++|+.||
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTT-SCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCC-CCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            799999999999999999998899999999998 9999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHhhhHHHhhhhc
Q 024492           94 ARLPGRTDNEIKNVWHTHLKKRLKQKQQ  121 (267)
Q Consensus        94 ~~lpgRT~~q~knRW~~llrk~~~~~~~  121 (267)
                      ++|||||+++|++||+.++++++.....
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~  108 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTNSN  108 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCCTT
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999998765543

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=100.00  E-value=1.5e-34  Score=236.16  Aligned_cols=106  Identities=37%  Similarity=0.631  Sum_probs=101.6

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 024492            8 EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGN   87 (267)
Q Consensus         8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~   87 (267)
                      .+++.++|+||+|||++|+.+|.+||. +|..||+.+++ |+++||++||.++|+|.+++|+||.|||++|+++|.+||+
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~   82 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR   82 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTT-CCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            478899999999999999999999998 99999999998 9999999999999999999999999999999999999999


Q ss_pred             cHHHHhhhCCCCCHHHHHHHHHHhhhHH
Q 024492           88 RWSAIAARLPGRTDNEIKNVWHTHLKKR  115 (267)
Q Consensus        88 kWs~IA~~lpgRT~~q~knRW~~llrk~  115 (267)
                      +|++||++|||||+++|++||+.++++.
T Consensus        83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           83 QWAIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999988763

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=100.00  E-value=1.1e-34  Score=236.86  Aligned_cols=108  Identities=45%  Similarity=0.869  Sum_probs=102.9

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 024492            8 EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGN   87 (267)
Q Consensus         8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~   87 (267)
                      .+|++++|+||+|||++|+.+|++||..+|..||+.+++ |+++||++||.++|+|.+++|+||+|||++|+++|++||+
T Consensus        21 l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~   99 (128)
T 1h8a_C           21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN   99 (128)
T ss_dssp             -CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSS-CCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             hCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcC-CcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            478999999999999999999999998899999999998 9999999999999999999999999999999999999999


Q ss_pred             cHHHHhhhCCCCCHHHHHHHHHHhhhHHH
Q 024492           88 RWSAIAARLPGRTDNEIKNVWHTHLKKRL  116 (267)
Q Consensus        88 kWs~IA~~lpgRT~~q~knRW~~llrk~~  116 (267)
                      +|+.||++|||||+++|++||+.++++++
T Consensus       100 ~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~  128 (128)
T 1h8a_C          100 RWAEIAKLLPGRTDNAVKNHWNSTMRRKV  128 (128)
T ss_dssp             CHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred             CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999999998753

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=1.8e-32  Score=231.16  Aligned_cols=108  Identities=46%  Similarity=0.870  Sum_probs=103.0

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 024492            8 EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGN   87 (267)
Q Consensus         8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~   87 (267)
                      ..|++++|+||+|||++|+.+|.+||..+|..||+.+++ |+++||+.||.++|+|.+++++||+|||++|++++.+||+
T Consensus        52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~  130 (159)
T 1h89_C           52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN  130 (159)
T ss_dssp             TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTT-CCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCC-CCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence            368899999999999999999999998789999999998 9999999999999999999999999999999999999999


Q ss_pred             cHHHHhhhCCCCCHHHHHHHHHHhhhHHH
Q 024492           88 RWSAIAARLPGRTDNEIKNVWHTHLKKRL  116 (267)
Q Consensus        88 kWs~IA~~lpgRT~~q~knRW~~llrk~~  116 (267)
                      +|+.||++|||||+++|+|||+.++++++
T Consensus       131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~~  159 (159)
T 1h89_C          131 RWAEIAKLLPGRTDNAIKNHWNSTMRRKV  159 (159)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred             CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999999998764

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=1.6e-31  Score=225.44  Aligned_cols=105  Identities=34%  Similarity=0.711  Sum_probs=62.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCC-cH
Q 024492           11 GLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGN-RW   89 (267)
Q Consensus        11 ~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~-kW   89 (267)
                      ++++|+||+|||++|+++|.+||..+|..||+.+++ |+++||++||.++|+|.+++|+||+|||++|+++|.+||. +|
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W   81 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW   81 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence            468999999999999999999998899999999998 9999999999999999999999999999999999999996 79


Q ss_pred             HHHhhhCCCCCHHHHHHHHHHhhhHHH
Q 024492           90 SAIAARLPGRTDNEIKNVWHTHLKKRL  116 (267)
Q Consensus        90 s~IA~~lpgRT~~q~knRW~~llrk~~  116 (267)
                      ..||++|||||++||++||+++|++.+
T Consensus        82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~  108 (159)
T 1h89_C           82 SVIAKHLKGRIGKQCRERWHNHLNPEV  108 (159)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHTTCTTS
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHhCccc
Confidence            999999999999999999999987654

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=7.5e-23  Score=150.93  Aligned_cols=67  Identities=28%  Similarity=0.606  Sum_probs=64.2

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHH
Q 024492            8 EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEE   75 (267)
Q Consensus         8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED   75 (267)
                      ..+++++|+||+|||++|+.+|.+||..+|..||+.|++ |+++||++||+++|+|.+++++||.|||
T Consensus         3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTT-CCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcC-CCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            357899999999999999999999998899999999997 9999999999999999999999999997

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.85  E-value=2.7e-22  Score=163.42  Aligned_cols=76  Identities=32%  Similarity=0.702  Sum_probs=52.2

Q ss_pred             cchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCC-cHHHHhhhCCCCCHHHHHHHHHHhhhHHH
Q 024492           40 LPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGN-RWSAIAARLPGRTDNEIKNVWHTHLKKRL  116 (267)
Q Consensus        40 IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~-kWs~IA~~lpgRT~~q~knRW~~llrk~~  116 (267)
                      ||+.+++ |+++||+.||.++|+|.+++|+||+|||++|+++|++||. +|.+||..|||||+.||++||+++|++.+
T Consensus         1 Ia~~~~~-Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~   77 (128)
T 1h8a_C            1 MEAVIKN-RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEV   77 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSS
T ss_pred             CccccCC-CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccc
Confidence            7888988 9999999999999999999999999999999999999995 69999999999999999999999987654

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.78  E-value=1.5e-19  Score=135.23  Aligned_cols=59  Identities=24%  Similarity=0.370  Sum_probs=47.4

Q ss_pred             cccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhh
Q 024492           53 CRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHL  112 (267)
Q Consensus        53 Cr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~ll  112 (267)
                      .--||.++|+|++++|+||+|||++|+++|++||++|++||+.| |||+++||+||+.+.
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~   67 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK   67 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            34589999999999999999999999999999999999999999 999999999999653

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.76  E-value=4.6e-19  Score=158.42  Aligned_cols=106  Identities=18%  Similarity=0.284  Sum_probs=92.7

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCC-----ccccchhhcccccccccccchhcccCCCCC-----------------
Q 024492            9 KMGLKKGPWTPEEDQILINYVKLYGHGN-----WRALPKQAGLLRCGKSCRLRWINYLRPDIK-----------------   66 (267)
Q Consensus         9 K~~lkkG~WT~EEDe~L~~~V~~~G~~n-----W~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ik-----------------   66 (267)
                      ...+++++||+|||++|+++|.+||..+     |..||+.|++ |++.|||.||+++|.+.+.                 
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G   81 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   81 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence            4567899999999999999999998643     9999999998 9999999999999999996                 


Q ss_pred             ------------CCCCCHHHHHHHHHHHHH-c--------------------------------CC--------------
Q 024492           67 ------------RGNFTREEEDTIINLHEM-L--------------------------------GN--------------   87 (267)
Q Consensus        67 ------------kg~WT~EED~~Li~lv~~-~--------------------------------G~--------------   87 (267)
                                  +..||.|||-.|...+++ +                                |.              
T Consensus        82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  161 (246)
T 1ign_A           82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR  161 (246)
T ss_dssp             CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred             CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence                        899999999999999877 1                                11              


Q ss_pred             -----------cHHHHhhhCCCCCHHHHHHHHHHhhhHH
Q 024492           88 -----------RWSAIAARLPGRTDNEIKNVWHTHLKKR  115 (267)
Q Consensus        88 -----------kWs~IA~~lpgRT~~q~knRW~~llrk~  115 (267)
                                 .|..||+.+|+||.+++|+||+.+|+..
T Consensus       162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                       6999999999999999999999999764

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=1.9e-18  Score=125.92  Aligned_cols=60  Identities=23%  Similarity=0.446  Sum_probs=56.8

Q ss_pred             cccCCCCCCCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhHHHhhh
Q 024492           59 NYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQK  119 (267)
Q Consensus        59 n~L~p~ikkg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk~~~~~  119 (267)
                      .+|+|.+++++||.|||++|+++|++||++|.+||+ |+|||++|||+||+.+|++.+++.
T Consensus         1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence            379999999999999999999999999999999999 889999999999999999988754

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.73  E-value=6.3e-19  Score=143.45  Aligned_cols=82  Identities=20%  Similarity=0.394  Sum_probs=77.2

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhh----cccccccccccchhcccC-----CCCCCC-CCCHHHHHHH
Q 024492            9 KMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQA----GLLRCGKSCRLRWINYLR-----PDIKRG-NFTREEEDTI   78 (267)
Q Consensus         9 K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l----~~~Rt~kqCr~Rw~n~L~-----p~ikkg-~WT~EED~~L   78 (267)
                      ++..++++||+|||+.|+.+|++||.++|..|++.+    ++ |++.+|++||.++|+     |.+++| +|++||+.+|
T Consensus        12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~-RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv   90 (121)
T 2juh_A           12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV   90 (121)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSS-CCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCC-CCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence            567789999999999999999999999999999985    55 999999999999998     999999 9999999999


Q ss_pred             HHHHHHcCCcHHH
Q 024492           79 INLHEMLGNRWSA   91 (267)
Q Consensus        79 i~lv~~~G~kWs~   91 (267)
                      +.++..|||+|.+
T Consensus        91 ~~~h~~~gn~~~~  103 (121)
T 2juh_A           91 LAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHccchhc
Confidence            9999999999976

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.73  E-value=5.6e-18  Score=125.56  Aligned_cols=58  Identities=21%  Similarity=0.240  Sum_probs=55.4

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhHHHhh
Q 024492           61 LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQ  118 (267)
Q Consensus        61 L~p~ikkg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk~~~~  118 (267)
                      ++|.+++++||.|||++|+++|++||++|..||++|||||++|||+||+.++++.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5799999999999999999999999999999999999999999999999999987665

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.70  E-value=3.7e-18  Score=122.02  Aligned_cols=57  Identities=28%  Similarity=0.546  Sum_probs=54.2

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCC
Q 024492            9 KMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIK   66 (267)
Q Consensus         9 K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ik   66 (267)
                      .|++++|+||+|||++|+++|.+||..+|..||+.|++ |+++||+.||.++|+|+++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSS-SCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccC-CCHHHHHHHHHHHcCCccC
Confidence            47889999999999999999999998899999999998 9999999999999999876

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.70  E-value=6.7e-18  Score=137.56  Aligned_cols=79  Identities=22%  Similarity=0.373  Sum_probs=72.7

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhh----cccccccccccchhccc-----CCCCCCCCCCHHH-HHHH
Q 024492            9 KMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQA----GLLRCGKSCRLRWINYL-----RPDIKRGNFTREE-EDTI   78 (267)
Q Consensus         9 K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l----~~~Rt~kqCr~Rw~n~L-----~p~ikkg~WT~EE-D~~L   78 (267)
                      +...++++||+|||+.|+++|++||.++|..|++..    ++ |++.||++||.|++     +|.+++|.|+++| +.+|
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~-RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v  104 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHH-RTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV  104 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCC-CCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence            344578999999999999999999999999999974    45 99999999999999     8999999999999 8999


Q ss_pred             HHHHHHcCCc
Q 024492           79 INLHEMLGNR   88 (267)
Q Consensus        79 i~lv~~~G~k   88 (267)
                      +.+|..||++
T Consensus       105 ~~~h~~~g~~  114 (122)
T 2roh_A          105 LAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhhH
Confidence            9999999975

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.70  E-value=1.1e-17  Score=119.50  Aligned_cols=55  Identities=24%  Similarity=0.462  Sum_probs=52.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcC-CcHHHHhhhCCCCCHHHHHHHHHHhhhHHH
Q 024492           62 RPDIKRGNFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHLKKRL  116 (267)
Q Consensus        62 ~p~ikkg~WT~EED~~Li~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~llrk~~  116 (267)
                      +|.+++++||+|||++|+++|.+|| ++|.+||++|+|||+.||++||+++|++.+
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i   58 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS   58 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence            5789999999999999999999999 699999999999999999999999998754

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.70  E-value=4.9e-18  Score=118.10  Aligned_cols=52  Identities=52%  Similarity=0.938  Sum_probs=49.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCC
Q 024492           12 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPD   64 (267)
Q Consensus        12 lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~   64 (267)
                      +++|+||+|||++|+++|.+||..+|..||+.+++ |+++||+.||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence            58999999999999999999998889999999998 99999999999999995

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.68  E-value=1e-17  Score=116.44  Aligned_cols=52  Identities=33%  Similarity=0.660  Sum_probs=48.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCC
Q 024492           12 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPD   64 (267)
Q Consensus        12 lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~   64 (267)
                      +++|+||+|||++|+.+|.+||.++|..||+.+++ |+++||+.||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence            57899999999999999999998899999999998 99999999999999995

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.68  E-value=1.2e-17  Score=122.73  Aligned_cols=62  Identities=24%  Similarity=0.378  Sum_probs=58.0

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhc--ccccccccccchhcccCCCCCCCCCC
Q 024492            9 KMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAG--LLRCGKSCRLRWINYLRPDIKRGNFT   71 (267)
Q Consensus         9 K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~--~~Rt~kqCr~Rw~n~L~p~ikkg~WT   71 (267)
                      ++..++|+||+|||++|+.+|++||.++|..||+.++  + |++.||++||.++|+|.+.++..+
T Consensus         5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCC-CCHHHHHHHHHHHcCCCCCCCCCC
Confidence            5677899999999999999999999889999999999  6 999999999999999999998764

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.67  E-value=5.2e-17  Score=112.81  Aligned_cols=50  Identities=34%  Similarity=0.643  Sum_probs=46.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCC-cHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492           65 IKRGNFTREEEDTIINLHEMLGN-RWSAIAARLPGRTDNEIKNVWHTHLKK  114 (267)
Q Consensus        65 ikkg~WT~EED~~Li~lv~~~G~-kWs~IA~~lpgRT~~q~knRW~~llrk  114 (267)
                      +++++||.|||++|+++|.+||. +|..||++|+|||+.||++||+++|++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            57899999999999999999998 999999999999999999999999875

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.66  E-value=9.5e-17  Score=111.57  Aligned_cols=50  Identities=38%  Similarity=0.800  Sum_probs=47.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCC-cHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492           65 IKRGNFTREEEDTIINLHEMLGN-RWSAIAARLPGRTDNEIKNVWHTHLKK  114 (267)
Q Consensus        65 ikkg~WT~EED~~Li~lv~~~G~-kWs~IA~~lpgRT~~q~knRW~~llrk  114 (267)
                      +++|+||+|||++|+++|.+||. +|.+||+.|+|||++||++||.++|++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            57899999999999999999997 699999999999999999999999875

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=6.9e-17  Score=118.87  Aligned_cols=57  Identities=25%  Similarity=0.418  Sum_probs=53.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcC-CcHHHHhhhCCCCCHHHHHHHHHHhhhHHHhh
Q 024492           62 RPDIKRGNFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQ  118 (267)
Q Consensus        62 ~p~ikkg~WT~EED~~Li~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~llrk~~~~  118 (267)
                      .|.+++|+||.|||++|+++|.+|| ++|.+||.+|+|||+.||++||+++|++.+++
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~   61 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK   61 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccC
Confidence            5789999999999999999999999 89999999999999999999999999987654

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.65  E-value=1.2e-16  Score=117.28  Aligned_cols=59  Identities=25%  Similarity=0.335  Sum_probs=54.6

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHcC-CcHHHHhhhCC--CCCHHHHHHHHHHhhhHHHhh
Q 024492           60 YLRPDIKRGNFTREEEDTIINLHEMLG-NRWSAIAARLP--GRTDNEIKNVWHTHLKKRLKQ  118 (267)
Q Consensus        60 ~L~p~ikkg~WT~EED~~Li~lv~~~G-~kWs~IA~~lp--gRT~~q~knRW~~llrk~~~~  118 (267)
                      ...|..++++||+|||++|+++|.+|| ++|..||.+|+  |||+.||++||+++|++.+.+
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k   64 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS   64 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence            456788999999999999999999999 79999999999  999999999999999987654

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.64  E-value=2.3e-16  Score=110.21  Aligned_cols=49  Identities=29%  Similarity=0.424  Sum_probs=46.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHcC-CcHHHHhhhCC--CCCHHHHHHHHHHhhhH
Q 024492           66 KRGNFTREEEDTIINLHEMLG-NRWSAIAARLP--GRTDNEIKNVWHTHLKK  114 (267)
Q Consensus        66 kkg~WT~EED~~Li~lv~~~G-~kWs~IA~~lp--gRT~~q~knRW~~llrk  114 (267)
                      ++++||+|||++|+++|.+|| ++|..||..|+  |||+.||++||+++++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            579999999999999999999 79999999999  99999999999999875

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.63  E-value=3.5e-16  Score=112.05  Aligned_cols=53  Identities=15%  Similarity=0.260  Sum_probs=49.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcC-CcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492           62 RPDIKRGNFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHLKK  114 (267)
Q Consensus        62 ~p~ikkg~WT~EED~~Li~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~llrk  114 (267)
                      .|.+.+++||+|||++|+++|++|| ++|.+||++|+|||+.||++||+++|..
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            4678999999999999999999999 8999999999999999999999998754

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.62  E-value=9.6e-17  Score=116.88  Aligned_cols=55  Identities=33%  Similarity=0.529  Sum_probs=49.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccchhhc-ccccccccccchhcccCCCCC
Q 024492           12 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAG-LLRCGKSCRLRWINYLRPDIK   66 (267)
Q Consensus        12 lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~-~~Rt~kqCr~Rw~n~L~p~ik   66 (267)
                      .+|++||+|||++|+++|++||.++|..||+.++ .+|++.||++||.|+++|.++
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            4789999999999999999999989999999876 139999999999999999874

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=4.8e-16  Score=115.69  Aligned_cols=57  Identities=23%  Similarity=0.246  Sum_probs=53.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcC------CcHHHHhhhCCCCCHHHHHHHHHHhhhHHHhh
Q 024492           62 RPDIKRGNFTREEEDTIINLHEMLG------NRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQ  118 (267)
Q Consensus        62 ~p~ikkg~WT~EED~~Li~lv~~~G------~kWs~IA~~lpgRT~~q~knRW~~llrk~~~~  118 (267)
                      +|.+.+++||.|||++|+++|.+||      ++|.+||++|+|||..||++||+.+|++.++.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~   65 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA   65 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence            5889999999999999999999999      78999999999999999999999999876543

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.60  E-value=2e-16  Score=113.31  Aligned_cols=55  Identities=22%  Similarity=0.479  Sum_probs=51.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCC
Q 024492           10 MGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDI   65 (267)
Q Consensus        10 ~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~i   65 (267)
                      +.+++++||+|||++|+++|++||..+|..||+.+++ |+++||+.||.++|.+..
T Consensus         4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~r~~~~l~~~~   58 (60)
T 1x41_A            4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYFSGPS   58 (60)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCC-CCHHHHHHHHHHHccCCC
Confidence            5789999999999999999999998899999999998 999999999999998753

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.60  E-value=9.9e-16  Score=111.50  Aligned_cols=52  Identities=29%  Similarity=0.480  Sum_probs=47.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcC-CcHHHHhhhCC--CCCHHHHHHHHHHhhhHHH
Q 024492           65 IKRGNFTREEEDTIINLHEMLG-NRWSAIAARLP--GRTDNEIKNVWHTHLKKRL  116 (267)
Q Consensus        65 ikkg~WT~EED~~Li~lv~~~G-~kWs~IA~~lp--gRT~~q~knRW~~llrk~~  116 (267)
                      .++++||+|||++|+++|.+|| ++|.+||+.++  |||+.||++||++++++.+
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl   63 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   63 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence            4789999999999999999999 58999999865  9999999999999988754

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.57  E-value=3.4e-15  Score=106.37  Aligned_cols=51  Identities=25%  Similarity=0.381  Sum_probs=47.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcC-CcHHHHhhhCC-CCCHHHHHHHHHHhh
Q 024492           62 RPDIKRGNFTREEEDTIINLHEMLG-NRWSAIAARLP-GRTDNEIKNVWHTHL  112 (267)
Q Consensus        62 ~p~ikkg~WT~EED~~Li~lv~~~G-~kWs~IA~~lp-gRT~~q~knRW~~ll  112 (267)
                      ...+.+++||+|||++|+++|++|| ++|.+||++|+ |||+.||++||.+++
T Consensus         4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            3456789999999999999999999 89999999999 999999999999864

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.57  E-value=5.7e-16  Score=108.19  Aligned_cols=49  Identities=31%  Similarity=0.507  Sum_probs=46.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCccccchhhc--ccccccccccchhcccC
Q 024492           13 KKGPWTPEEDQILINYVKLYGHGNWRALPKQAG--LLRCGKSCRLRWINYLR   62 (267)
Q Consensus        13 kkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~--~~Rt~kqCr~Rw~n~L~   62 (267)
                      ++|+||+|||++|+.+|++||.++|..||+.++  + |++.||++||.++++
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCC-CCHHHHHHHHHHHHc
Confidence            589999999999999999999889999999999  6 999999999999885

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=2.1e-16  Score=115.00  Aligned_cols=59  Identities=24%  Similarity=0.386  Sum_probs=54.3

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCC
Q 024492            8 EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGN   69 (267)
Q Consensus         8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~   69 (267)
                      ..|.+++++||+|||++|+.+|+.||. +|..||+ +++ |+++||+.||.++|+|.++++.
T Consensus         3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCCC
Confidence            468999999999999999999999997 9999999 776 9999999999999999877653

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=4.3e-16  Score=115.93  Aligned_cols=61  Identities=21%  Similarity=0.290  Sum_probs=56.7

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-----CCccccchhhcccccccccccchhcccCCCCCCCC
Q 024492            8 EKMGLKKGPWTPEEDQILINYVKLYGH-----GNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGN   69 (267)
Q Consensus         8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~-----~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~   69 (267)
                      .+|++++++||+|||++|+++|.+||.     .+|..||+.|++ |+++||+.||++||.+.++.|.
T Consensus         2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcCC
Confidence            478999999999999999999999996     689999999998 9999999999999999887764

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.34  E-value=2.5e-16  Score=121.54  Aligned_cols=57  Identities=26%  Similarity=0.272  Sum_probs=53.7

Q ss_pred             cccCCCCCCCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhHH
Q 024492           59 NYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKR  115 (267)
Q Consensus        59 n~L~p~ikkg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk~  115 (267)
                      ..+.|.+++|+||.|||++|+++|.+||++|..||.+|+|||++||++||+.++++.
T Consensus         8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            357889999999999999999999999999999999999999999999999999864

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.54  E-value=1.9e-15  Score=107.72  Aligned_cols=51  Identities=24%  Similarity=0.517  Sum_probs=47.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhccc
Q 024492           11 GLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYL   61 (267)
Q Consensus        11 ~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L   61 (267)
                      .+.+++||+|||++|+++|++||.++|..||+.++++|+++||+.||.+++
T Consensus         6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            467899999999999999999998899999999993399999999999876

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.50  E-value=2.6e-14  Score=106.67  Aligned_cols=53  Identities=11%  Similarity=0.242  Sum_probs=48.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcC----CcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492           62 RPDIKRGNFTREEEDTIINLHEMLG----NRWSAIAARLPGRTDNEIKNVWHTHLKK  114 (267)
Q Consensus        62 ~p~ikkg~WT~EED~~Li~lv~~~G----~kWs~IA~~lpgRT~~q~knRW~~llrk  114 (267)
                      .+.+.+++||.|||.+|++++.+||    ++|.+||++|||||.+||++||+.+++.
T Consensus        13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d   69 (73)
T 2cqr_A           13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG   69 (73)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            3567889999999999999999999    7899999999999999999999988753

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.49  E-value=3.6e-15  Score=110.38  Aligned_cols=58  Identities=19%  Similarity=0.305  Sum_probs=54.1

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCC
Q 024492            8 EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKR   67 (267)
Q Consensus         8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikk   67 (267)
                      ..|.+++|+||+|||++|+.+|.+||. +|..||+.|++ |++.||+.||+++|++.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhc
Confidence            357899999999999999999999997 99999999998 99999999999999887665

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.44  E-value=2.7e-14  Score=113.54  Aligned_cols=79  Identities=22%  Similarity=0.375  Sum_probs=68.3

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhh----cccccccccccchhccc-----CCCCCCCCCCHHHHHH-
Q 024492            8 EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQA----GLLRCGKSCRLRWINYL-----RPDIKRGNFTREEEDT-   77 (267)
Q Consensus         8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l----~~~Rt~kqCr~Rw~n~L-----~p~ikkg~WT~EED~~-   77 (267)
                      .+...++++||+|||+.|+.+|++||.++|..|++.+    ++ |++.+|++||.+++     +|.+++|.-+++|--. 
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~-RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r   85 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADH-RTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR   85 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTC-CCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence            3567789999999999999999999999999999975    45 99999999999999     6999999888877665 


Q ss_pred             HHHHHHHcCC
Q 024492           78 IINLHEMLGN   87 (267)
Q Consensus        78 Li~lv~~~G~   87 (267)
                      +++|+..+|+
T Consensus        86 v~~~~~~~~~   95 (105)
T 2aje_A           86 VLNAHGYWTQ   95 (105)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888877664

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.44  E-value=7.8e-14  Score=113.31  Aligned_cols=56  Identities=25%  Similarity=0.502  Sum_probs=51.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhHHHh
Q 024492           62 RPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLK  117 (267)
Q Consensus        62 ~p~ikkg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk~~~  117 (267)
                      .+..++|+||+|||++|+++|.+||.+|..||+.|+|||..||+.||.++|.+.++
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~   61 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSIS   61 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSC
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccc
Confidence            45788999999999999999999999999999999999999999999999876543

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.44  E-value=5.7e-14  Score=107.28  Aligned_cols=69  Identities=23%  Similarity=0.482  Sum_probs=60.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccchh----hcccccccccccchhccc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 024492           15 GPWTPEEDQILINYVKLYGHGNWRALPKQ----AGLLRCGKSCRLRWINYL-----RPDIKRG-NFTREEEDTIINLHEM   84 (267)
Q Consensus        15 G~WT~EEDe~L~~~V~~~G~~nW~~IA~~----l~~~Rt~kqCr~Rw~n~L-----~p~ikkg-~WT~EED~~Li~lv~~   84 (267)
                      ++||+|||+.|+.+|++||.++|..|++.    +++ |++.+|++||.|+|     .|.+++| +...+...+++.++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~-RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCC-CCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            58999999999999999999999999986    666 99999999999998     6877766 6777777889998864

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.44  E-value=6.8e-14  Score=109.77  Aligned_cols=53  Identities=36%  Similarity=0.787  Sum_probs=48.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCC-cHHHHhhhCCCCCHHHHHHHHHHhhhHHH
Q 024492           64 DIKRGNFTREEEDTIINLHEMLGN-RWSAIAARLPGRTDNEIKNVWHTHLKKRL  116 (267)
Q Consensus        64 ~ikkg~WT~EED~~Li~lv~~~G~-kWs~IA~~lpgRT~~q~knRW~~llrk~~  116 (267)
                      ++++|+||+|||++|+++|++||. +|..||+.|||||..||++||.++|.+.+
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~   54 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEV   54 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcc
Confidence            478999999999999999999996 79999999999999999999999886543

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.42  E-value=1.1e-13  Score=104.58  Aligned_cols=49  Identities=16%  Similarity=0.265  Sum_probs=45.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHh
Q 024492           63 PDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH  111 (267)
Q Consensus        63 p~ikkg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~l  111 (267)
                      ....+++||.|||++|+++|++||++|.+||++|++||..||++||..+
T Consensus        14 ~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           14 GASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             ccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            3456899999999999999999999999999999999999999999865

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.41  E-value=7.4e-14  Score=104.23  Aligned_cols=62  Identities=19%  Similarity=0.224  Sum_probs=48.9

Q ss_pred             CccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCC
Q 024492            3 RAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRG   68 (267)
Q Consensus         3 R~p~~~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg   68 (267)
                      |.--...|++++|+||+|||++|+++|++||. .|..||+.+ + |++.||+.||.. |....+.|
T Consensus        12 ~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-g-Rt~~q~knRw~~-L~~~~~~G   73 (73)
T 2llk_A           12 ENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-G-RSASSVKDRCRL-MKDTCNTG   73 (73)
T ss_dssp             -------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-T-SCHHHHHHHHHH-CSCCCSCC
T ss_pred             ceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-C-CCHHHHHHHHHH-HHHHccCC
Confidence            33445678999999999999999999999997 699999999 6 999999999974 55554443

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.39  E-value=5.1e-14  Score=115.03  Aligned_cols=83  Identities=19%  Similarity=0.333  Sum_probs=61.6

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 024492            8 EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGN   87 (267)
Q Consensus         8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~   87 (267)
                      ..|++++|+||+|||++|+.+|.+||. +|..||+.|++ |++.||+.||+++|++.+..++|+.+-    +......+.
T Consensus        48 l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~g-Rt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk~  121 (131)
T 3zqc_A           48 LDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIPG-RTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKKR  121 (131)
T ss_dssp             TSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTSTT-CCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC---
T ss_pred             cCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhhh
Confidence            368999999999999999999999996 99999999998 999999999999999999999988652    111122345


Q ss_pred             cHHHHhhhC
Q 024492           88 RWSAIAARL   96 (267)
Q Consensus        88 kWs~IA~~l   96 (267)
                      +|..|++.|
T Consensus       122 ~~~~i~k~~  130 (131)
T 3zqc_A          122 KAADVPKKL  130 (131)
T ss_dssp             ---------
T ss_pred             hhhhcchhc
Confidence            677777765

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.38  E-value=1.9e-13  Score=103.37  Aligned_cols=54  Identities=20%  Similarity=0.503  Sum_probs=50.0

Q ss_pred             ccccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhccc
Q 024492            6 CCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYL   61 (267)
Q Consensus         6 ~~~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L   61 (267)
                      .+.+....+++||+|||++|+++|++|| .+|..||+++++ |+..||+.||.++.
T Consensus        10 ~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~-RT~~qcr~r~~~~~   63 (79)
T 2yus_A           10 AKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGS-RTQDECILHFLRLP   63 (79)
T ss_dssp             CCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSS-CCHHHHHHHHTTSC
T ss_pred             CCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHhc
Confidence            4567778899999999999999999999 799999999998 99999999999984

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.36  E-value=8.6e-13  Score=100.71  Aligned_cols=49  Identities=27%  Similarity=0.511  Sum_probs=45.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCC-cHHHHhhh----CCCCCHHHHHHHHHHhhhHHH
Q 024492           68 GNFTREEEDTIINLHEMLGN-RWSAIAAR----LPGRTDNEIKNVWHTHLKKRL  116 (267)
Q Consensus        68 g~WT~EED~~Li~lv~~~G~-kWs~IA~~----lpgRT~~q~knRW~~llrk~~  116 (267)
                      ++||.|||+.|+++|++||. +|+.|++.    |+|||+.+||+||+++++...
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            47999999999999999996 99999996    899999999999999998643

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.36  E-value=4e-13  Score=106.11  Aligned_cols=51  Identities=22%  Similarity=0.429  Sum_probs=47.2

Q ss_pred             CCCCCHHHHHHHHHHHHHcCC-cHHHHhhhCCCCCHHHHHHHHHHhhhHHHh
Q 024492           67 RGNFTREEEDTIINLHEMLGN-RWSAIAARLPGRTDNEIKNVWHTHLKKRLK  117 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~G~-kWs~IA~~lpgRT~~q~knRW~~llrk~~~  117 (267)
                      ||.||+|||++|+++|.+||. +|..||..|||||+.||+.||.++|.+.++
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~   52 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALR   52 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCT
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHccccc
Confidence            689999999999999999995 899999999999999999999999876543

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.35  E-value=4.4e-13  Score=119.89  Aligned_cols=55  Identities=29%  Similarity=0.534  Sum_probs=49.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCCc------HHHHhhhCCCCCHHHHHHHHHHhhhHHHh
Q 024492           63 PDIKRGNFTREEEDTIINLHEMLGNR------WSAIAARLPGRTDNEIKNVWHTHLKKRLK  117 (267)
Q Consensus        63 p~ikkg~WT~EED~~Li~lv~~~G~k------Ws~IA~~lpgRT~~q~knRW~~llrk~~~  117 (267)
                      +.+++++||+|||++|+++|++||++      |.+||++|||||+++||+||+.+|++++.
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln   64 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE   64 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence            46789999999999999999999986      99999999999999999999999999876

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.34  E-value=1.3e-12  Score=94.33  Aligned_cols=49  Identities=24%  Similarity=0.493  Sum_probs=45.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCcHHHHh---hhCCCCCHHHHHHHHHHhhhH
Q 024492           66 KRGNFTREEEDTIINLHEMLGNRWSAIA---ARLPGRTDNEIKNVWHTHLKK  114 (267)
Q Consensus        66 kkg~WT~EED~~Li~lv~~~G~kWs~IA---~~lpgRT~~q~knRW~~llrk  114 (267)
                      ++.+||+|||+.|+++|++||.+|..|+   ..++|||..+||+||+++.|+
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            5789999999999999999999999999   577999999999999998764

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.34  E-value=1.1e-12  Score=106.71  Aligned_cols=55  Identities=27%  Similarity=0.477  Sum_probs=50.7

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHcCC-cHHHHhhh----CCCCCHHHHHHHHHHhhhH
Q 024492           60 YLRPDIKRGNFTREEEDTIINLHEMLGN-RWSAIAAR----LPGRTDNEIKNVWHTHLKK  114 (267)
Q Consensus        60 ~L~p~ikkg~WT~EED~~Li~lv~~~G~-kWs~IA~~----lpgRT~~q~knRW~~llrk  114 (267)
                      .+.+..++++||.|||+.|+++|++||+ +|+.|++.    |+|||+.+||+||+++++.
T Consensus        10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~   69 (121)
T 2juh_A           10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT   69 (121)
T ss_dssp             CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            4567889999999999999999999996 99999997    4999999999999999985

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.33  E-value=2.4e-12  Score=100.19  Aligned_cols=50  Identities=18%  Similarity=0.395  Sum_probs=46.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHcC----CcHHHHhhhCCCCCHHHHHHHHHHhhhHH
Q 024492           66 KRGNFTREEEDTIINLHEMLG----NRWSAIAARLPGRTDNEIKNVWHTHLKKR  115 (267)
Q Consensus        66 kkg~WT~EED~~Li~lv~~~G----~kWs~IA~~lpgRT~~q~knRW~~llrk~  115 (267)
                      .+++||.|||.+|++++.+||    ++|.+||++|||||.++|++||+.+++..
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            468999999999999999996    78999999999999999999999988764

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.33  E-value=1.9e-12  Score=102.85  Aligned_cols=54  Identities=24%  Similarity=0.422  Sum_probs=48.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCC-cHHHHhhhC----CCCCHHHHHHHHHHhhhHH
Q 024492           62 RPDIKRGNFTREEEDTIINLHEMLGN-RWSAIAARL----PGRTDNEIKNVWHTHLKKR  115 (267)
Q Consensus        62 ~p~ikkg~WT~EED~~Li~lv~~~G~-kWs~IA~~l----pgRT~~q~knRW~~llrk~  115 (267)
                      .+..++++||.|||+.|+++|++||. +|+.|++.+    +|||+.+||+||+++++..
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~   66 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA   66 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            35678999999999999999999996 999999965    8999999999999998753

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.98  E-value=1.7e-13  Score=105.61  Aligned_cols=54  Identities=24%  Similarity=0.394  Sum_probs=50.4

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCC
Q 024492            8 EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRP   63 (267)
Q Consensus         8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p   63 (267)
                      .-|++++|+||+|||++|+.+|..||. +|..||+.+++ |++.||+.||+++|..
T Consensus        10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~g-Rt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGS-KTVSQCKNFYFNYKKR   63 (89)
Confidence            357889999999999999999999997 89999999998 9999999999999864

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.28  E-value=5.4e-13  Score=99.54  Aligned_cols=55  Identities=16%  Similarity=0.387  Sum_probs=50.0

Q ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhC---CCCccccchhhcccccccccccchhcccC
Q 024492            7 CEKMGLKKGPWTPEEDQILINYVKLYG---HGNWRALPKQAGLLRCGKSCRLRWINYLR   62 (267)
Q Consensus         7 ~~K~~lkkG~WT~EEDe~L~~~V~~~G---~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~   62 (267)
                      -+++...+++||+|||++|..+++.||   ..+|..||++||+ |+.+||+.||.+++.
T Consensus        11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHS
T ss_pred             ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence            467788999999999999999999999   3589999999998 999999999998764

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.25  E-value=7.3e-12  Score=101.93  Aligned_cols=54  Identities=28%  Similarity=0.469  Sum_probs=48.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCC-cHHHHhhh----CCCCCHHHHHHHHHHhhhHH
Q 024492           62 RPDIKRGNFTREEEDTIINLHEMLGN-RWSAIAAR----LPGRTDNEIKNVWHTHLKKR  115 (267)
Q Consensus        62 ~p~ikkg~WT~EED~~Li~lv~~~G~-kWs~IA~~----lpgRT~~q~knRW~~llrk~  115 (267)
                      ....++++||.|||+.|+++|++||. +|+.|++.    |+|||..+||+||+++++..
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~   84 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA   84 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            34567899999999999999999996 99999986    48999999999999999754

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=99.09  E-value=1.7e-10  Score=89.70  Aligned_cols=66  Identities=18%  Similarity=0.272  Sum_probs=60.2

Q ss_pred             ccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCCcHHHHhhhC-----CCCCHHHHHHHHHHhhhHHHhhh
Q 024492           50 GKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARL-----PGRTDNEIKNVWHTHLKKRLKQK  119 (267)
Q Consensus        50 ~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~kWs~IA~~l-----pgRT~~q~knRW~~llrk~~~~~  119 (267)
                      ..-+.++|.++|.+    ++||.||++.|++|+++||.+|..|+..+     ++||..+||+||..+.++-++.+
T Consensus        17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            46688999999987    89999999999999999999999999999     58999999999999998876654

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=4.8e-10  Score=80.36  Aligned_cols=47  Identities=11%  Similarity=0.034  Sum_probs=43.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhh
Q 024492           66 KRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHL  112 (267)
Q Consensus        66 kkg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~ll  112 (267)
                      ..++||+||++++++++.+||.+|..||..|||||..+|.++|....
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            45799999999999999999999999999999999999999998643

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.97  E-value=7.6e-10  Score=82.18  Aligned_cols=50  Identities=18%  Similarity=0.274  Sum_probs=45.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcC----CcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492           64 DIKRGNFTREEEDTIINLHEMLG----NRWSAIAARLPGRTDNEIKNVWHTHLKK  114 (267)
Q Consensus        64 ~ikkg~WT~EED~~Li~lv~~~G----~kWs~IA~~lpgRT~~q~knRW~~llrk  114 (267)
                      ..+.+.||.||+++|.+++.+|+    ++|.+||++| |||.++|++||+.+.+.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            45678999999999999999997    6899999998 99999999999987654

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.96  E-value=1.1e-10  Score=90.87  Aligned_cols=48  Identities=13%  Similarity=0.387  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---CCCccccchhhcccccccccccchhccc
Q 024492           13 KKGPWTPEEDQILINYVKLYG---HGNWRALPKQAGLLRCGKSCRLRWINYL   61 (267)
Q Consensus        13 kkG~WT~EEDe~L~~~V~~~G---~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L   61 (267)
                      .+++||+|||++|..++++||   ..+|..||+.+|+ |+.+||+.||.+++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence            468999999999999999997   4579999999998 99999999998865

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.83  E-value=3.2e-09  Score=94.29  Aligned_cols=49  Identities=16%  Similarity=0.258  Sum_probs=46.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492           66 KRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKK  114 (267)
Q Consensus        66 kkg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk  114 (267)
                      ..++||.||+.++++++.+||++|..||+.|++||..|||++|+.+.++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999999999987765

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.75  E-value=9.9e-09  Score=76.44  Aligned_cols=48  Identities=17%  Similarity=0.274  Sum_probs=43.8

Q ss_pred             CCCCCHHHHHHHHHHHHHcC----CcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492           67 RGNFTREEEDTIINLHEMLG----NRWSAIAARLPGRTDNEIKNVWHTHLKK  114 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~G----~kWs~IA~~lpgRT~~q~knRW~~llrk  114 (267)
                      .+.||.||+.+|.+++..|+    .+|.+||..|||||..+|+.||..+++.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            46899999999999999998    4799999999999999999999987544

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.69  E-value=4.3e-09  Score=75.98  Aligned_cols=48  Identities=19%  Similarity=0.248  Sum_probs=43.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCccccch---hhcccccccccccchhcccC
Q 024492           13 KKGPWTPEEDQILINYVKLYGHGNWRALPK---QAGLLRCGKSCRLRWINYLR   62 (267)
Q Consensus        13 kkG~WT~EEDe~L~~~V~~~G~~nW~~IA~---~l~~~Rt~kqCr~Rw~n~L~   62 (267)
                      .+++||+|||+.|++.|++||. +|..|+.   ++.+ |+...+++||++..+
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~-RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKG-RRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTT-CCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccC-cccchHHHHHHHHHh
Confidence            6799999999999999999998 9999994   5555 999999999998764

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.68  E-value=6.9e-09  Score=74.28  Aligned_cols=52  Identities=13%  Similarity=0.110  Sum_probs=45.5

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhccc
Q 024492            8 EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYL   61 (267)
Q Consensus         8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L   61 (267)
                      ++..-..++||+||++++.+++.+||. +|..||+.+++ |+..||+.+|....
T Consensus         6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~~-rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A            6 SGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLER-KSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCTT-SCHHHHHHHHHHHT
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHHHhc
Confidence            334446799999999999999999995 99999999998 99999999987654

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.52  E-value=1.2e-07  Score=67.58  Aligned_cols=47  Identities=26%  Similarity=0.456  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHHc--------CCc-HHHHhh-hCCCCCHHHHHHHHHHhhh
Q 024492           67 RGNFTREEEDTIINLHEML--------GNR-WSAIAA-RLPGRTDNEIKNVWHTHLK  113 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~--------G~k-Ws~IA~-~lpgRT~~q~knRW~~llr  113 (267)
                      +.+||.|||.+|++.|.+|        |++ |.++++ .+|++|-.++|+||...|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        544 999999 8999999999999998764

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.48  E-value=3.2e-08  Score=73.37  Aligned_cols=50  Identities=14%  Similarity=0.202  Sum_probs=43.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC---CCccccchhhcccccccccccchhcccC
Q 024492           11 GLKKGPWTPEEDQILINYVKLYGH---GNWRALPKQAGLLRCGKSCRLRWINYLR   62 (267)
Q Consensus        11 ~lkkG~WT~EEDe~L~~~V~~~G~---~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~   62 (267)
                      ..+++.||.|||++|..++.+|+.   ..|..||+.+ + |+.++|+.||.....
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-g-Rt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-G-RSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-T-SCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-C-CCHHHHHHHHHHHHH
Confidence            346789999999999999999983   5799999998 4 999999999987654

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.41  E-value=1.6e-07  Score=91.46  Aligned_cols=46  Identities=17%  Similarity=0.273  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 024492           68 GNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLK  113 (267)
Q Consensus        68 g~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llr  113 (267)
                      ..||.||-.++++++.+||..|..||.+++.||..|||++|..+.+
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk  426 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR  426 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999999999976443

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.40  E-value=5.7e-08  Score=69.37  Aligned_cols=48  Identities=27%  Similarity=0.475  Sum_probs=43.3

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCCCccccch-hhcccccccccccchhcccC
Q 024492           14 KGPWTPEEDQILINYVKLY--------GHGNWRALPK-QAGLLRCGKSCRLRWINYLR   62 (267)
Q Consensus        14 kG~WT~EEDe~L~~~V~~~--------G~~nW~~IA~-~l~~~Rt~kqCr~Rw~n~L~   62 (267)
                      +.+||+|||+.|+.+|.+|        |..-|..+++ .++. ++-.+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~-HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCC-CCHHHHHHHHHHHcc
Confidence            6799999999999999999        5557999999 6877 999999999999884

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.27  E-value=2.3e-07  Score=69.03  Aligned_cols=48  Identities=21%  Similarity=0.412  Sum_probs=43.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC---CCccccchhhcccccccccccchhcccC
Q 024492           14 KGPWTPEEDQILINYVKLYGH---GNWRALPKQAGLLRCGKSCRLRWINYLR   62 (267)
Q Consensus        14 kG~WT~EEDe~L~~~V~~~G~---~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~   62 (267)
                      ...||.+|+++|..++..|+.   .+|..||..+|+ |+..+|+.||...+.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence            468999999999999999975   479999999999 999999999988754

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.23  E-value=1.4e-06  Score=67.12  Aligned_cols=46  Identities=22%  Similarity=0.397  Sum_probs=43.4

Q ss_pred             CCCHHHHHHHHHHHHHcCC---cHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492           69 NFTREEEDTIINLHEMLGN---RWSAIAARLPGRTDNEIKNVWHTHLKK  114 (267)
Q Consensus        69 ~WT~EED~~Li~lv~~~G~---kWs~IA~~lpgRT~~q~knRW~~llrk  114 (267)
                      .||+|||+.|+...++-|.   .|..||+.|.+|+.+||++||+.|++-
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L   83 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL   83 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            6999999999999999996   799999999999999999999998765

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.18  E-value=6.4e-07  Score=79.61  Aligned_cols=50  Identities=22%  Similarity=0.466  Sum_probs=45.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccC
Q 024492           11 GLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLR   62 (267)
Q Consensus        11 ~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~   62 (267)
                      ....++||+||+++++.++.+||. +|..||+.+++ |+..||+.+|+++.+
T Consensus       130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~VgT-KT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGN-KSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred             CccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence            345689999999999999999995 99999999999 999999999998774

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.15  E-value=3.2e-07  Score=68.23  Aligned_cols=43  Identities=21%  Similarity=0.340  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHHHHHHHcCC----cHHHHhhhCCCCCHHHHHHHHH
Q 024492           67 RGNFTREEEDTIINLHEMLGN----RWSAIAARLPGRTDNEIKNVWH  109 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~G~----kWs~IA~~lpgRT~~q~knRW~  109 (267)
                      .+.||.||+++|.+++.+|+.    +|.+||+.|||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999984    7999999999999999998874

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.41  E-value=3.3e-07  Score=67.07  Aligned_cols=45  Identities=20%  Similarity=0.378  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHHHHHHcCC---cHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492           69 NFTREEEDTIINLHEMLGN---RWSAIAARLPGRTDNEIKNVWHTHLKK  114 (267)
Q Consensus        69 ~WT~EED~~Li~lv~~~G~---kWs~IA~~lpgRT~~q~knRW~~llrk  114 (267)
                      .||.|||+.|+..+++-|.   .|..||+.| +|+++||++||+.+++-
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L   63 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL   63 (70)
Confidence            5999999999999999997   799999999 99999999999998763

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=98.10  E-value=7.2e-06  Score=63.54  Aligned_cols=61  Identities=20%  Similarity=0.321  Sum_probs=52.3

Q ss_pred             cchhcccCCCCCCCCCCHHHHHHHHHHHHHcCCcHHHHhhhCC-----CCCHHHHHHHHHHhhhHHHhhh
Q 024492           55 LRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLP-----GRTDNEIKNVWHTHLKKRLKQK  119 (267)
Q Consensus        55 ~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~kWs~IA~~lp-----gRT~~q~knRW~~llrk~~~~~  119 (267)
                      +.|..+|.    ...||.||...|++|+++|+-+|..|+..+.     .||-.++|.||..+.++-++.+
T Consensus        22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r   87 (93)
T 4iej_A           22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            45666665    3689999999999999999999999999873     7999999999999998876544

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.07  E-value=9.6e-06  Score=58.26  Aligned_cols=49  Identities=14%  Similarity=0.196  Sum_probs=44.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCcHHHHhh-hCCCCCHHHHHHHHHH
Q 024492           62 RPDIKRGNFTREEEDTIINLHEMLGNRWSAIAA-RLPGRTDNEIKNVWHT  110 (267)
Q Consensus        62 ~p~ikkg~WT~EED~~Li~lv~~~G~kWs~IA~-~lpgRT~~q~knRW~~  110 (267)
                      .|.++...||+||-.+..+.+.+||..|..|++ .|++||..+|...|..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            477888999999999999999999999999999 5899999999988763

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=97.89  E-value=2.5e-05  Score=72.28  Aligned_cols=103  Identities=19%  Similarity=0.263  Sum_probs=79.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccchhhccccccccccc-------chhc-----------------------c----
Q 024492           15 GPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRL-------RWIN-----------------------Y----   60 (267)
Q Consensus        15 G~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~-------Rw~n-----------------------~----   60 (267)
                      +.||..+...++.++.+||..+|..||..+++ ++...++.       ||..                       .    
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~-Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l  189 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEG-KTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL  189 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTT-CCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999986 66544422       1100                       0    


Q ss_pred             -------------c---CCCCCCCCCCHHHHHHHHHHHHHcC----CcHHHHhh------------hCCCCCHHHHHHHH
Q 024492           61 -------------L---RPDIKRGNFTREEEDTIINLHEMLG----NRWSAIAA------------RLPGRTDNEIKNVW  108 (267)
Q Consensus        61 -------------L---~p~ikkg~WT~EED~~Li~lv~~~G----~kWs~IA~------------~lpgRT~~q~knRW  108 (267)
                                   |   -+..+...||.|||..|+-++.+||    +.|..|-.            .+..||+.+|..|-
T Consensus       190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc  269 (304)
T 1ofc_X          190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC  269 (304)
T ss_dssp             HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence                         0   0222446899999999999999999    57999963            34579999999999


Q ss_pred             HHhhhHHHhh
Q 024492          109 HTHLKKRLKQ  118 (267)
Q Consensus       109 ~~llrk~~~~  118 (267)
                      .+|++-..+.
T Consensus       270 ~tLi~~iekE  279 (304)
T 1ofc_X          270 NTLITLIERE  279 (304)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999764443

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.75  E-value=4.9e-06  Score=61.80  Aligned_cols=44  Identities=11%  Similarity=0.279  Sum_probs=39.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC---Cccccchhhcccccccccccchh
Q 024492           14 KGPWTPEEDQILINYVKLYGHG---NWRALPKQAGLLRCGKSCRLRWI   58 (267)
Q Consensus        14 kG~WT~EEDe~L~~~V~~~G~~---nW~~IA~~l~~~Rt~kqCr~Rw~   58 (267)
                      .+.||.+|+++|..++..|+..   .|.+||+.+|+ |+..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHH
Confidence            4689999999999999999753   79999999998 99999999985

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.59  E-value=0.00011  Score=56.80  Aligned_cols=44  Identities=16%  Similarity=0.112  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHH
Q 024492           67 RGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT  110 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~  110 (267)
                      ...||+||.++..+.+..||.+|.+||..||+||..+|-..|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence            46899999999999999999999999999999999999988764

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.56  E-value=3.6e-05  Score=55.22  Aligned_cols=50  Identities=14%  Similarity=0.133  Sum_probs=44.5

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccch-hhcccccccccccchhc
Q 024492            8 EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPK-QAGLLRCGKSCRLRWIN   59 (267)
Q Consensus         8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~-~l~~~Rt~kqCr~Rw~n   59 (267)
                      -.|.+....||+||-++..+++.+||. +|..|++ .++. |+..+|..-|..
T Consensus         3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY~   53 (63)
T 2yqk_A            3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPN-KETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTT-SCHHHHHHHHHH
T ss_pred             CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CcHHHHHHHHhc
Confidence            357888899999999999999999996 9999999 5888 999999887654

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.51  E-value=0.00022  Score=52.18  Aligned_cols=43  Identities=16%  Similarity=0.187  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCcHHHHhh-hCCCCCHHHHHHHHH
Q 024492           67 RGNFTREEEDTIINLHEMLGNRWSAIAA-RLPGRTDNEIKNVWH  109 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~G~kWs~IA~-~lpgRT~~q~knRW~  109 (267)
                      ...||+||-.+..+.+.+||..|..|++ .|++||..+|...|.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY   51 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY   51 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence            4689999999999999999999999999 599999999999887

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.36  E-value=0.00018  Score=54.07  Aligned_cols=48  Identities=17%  Similarity=0.485  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHHHcC----------CcHHHHhhhCC----CCCHHHHHHHHHHhhhH
Q 024492           67 RGNFTREEEDTIINLHEMLG----------NRWSAIAARLP----GRTDNEIKNVWHTHLKK  114 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~G----------~kWs~IA~~lp----gRT~~q~knRW~~llrk  114 (267)
                      ...||.+|-.+||+++..+.          ..|..||..|.    .||+.||+++|.+|.+.
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~   65 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE   65 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            46899999999999997643          14999999873    69999999999987765

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.28  E-value=8.6e-05  Score=57.52  Aligned_cols=49  Identities=14%  Similarity=0.287  Sum_probs=42.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccchhhc----ccccccccccchhccc
Q 024492           12 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAG----LLRCGKSCRLRWINYL   61 (267)
Q Consensus        12 lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~----~~Rt~kqCr~Rw~n~L   61 (267)
                      |..++||.||++.|..++++|+. .|..|+....    .+|+..+++.||....
T Consensus        28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999997 9999999983    2399999999998754

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.21  E-value=0.00013  Score=71.16  Aligned_cols=48  Identities=21%  Similarity=0.459  Sum_probs=43.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhccc
Q 024492           12 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYL   61 (267)
Q Consensus        12 lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L   61 (267)
                      ....+||.||-++++.++.+||. +|..||+.+++ |+..||+..|.++-
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~VgT-KT~~Qvk~fy~~~k  425 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGN-KSVVQVKNFFVNYR  425 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHSS-CCHHHHHHHHHHTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence            34689999999999999999995 99999999999 99999999887654

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=96.70  E-value=0.00058  Score=52.70  Aligned_cols=44  Identities=11%  Similarity=0.179  Sum_probs=40.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhc
Q 024492           14 KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWIN   59 (267)
Q Consensus        14 kG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n   59 (267)
                      ...||+||.+++.+....||. +|..|++.+++ |+..+|..-|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~~-Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLER-KTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCTT-CCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcCC-CCHHHHHHHHhc
Confidence            478999999999999999995 99999999998 999999887653

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.70  E-value=0.0006  Score=49.81  Aligned_cols=45  Identities=11%  Similarity=0.201  Sum_probs=40.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCccccch-hhcccccccccccchhc
Q 024492           13 KKGPWTPEEDQILINYVKLYGHGNWRALPK-QAGLLRCGKSCRLRWIN   59 (267)
Q Consensus        13 kkG~WT~EEDe~L~~~V~~~G~~nW~~IA~-~l~~~Rt~kqCr~Rw~n   59 (267)
                      ....||+||-++...++..||. +|..|++ .+++ |+..+|..-|..
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPW-KSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSS-SCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CCHHHHHHHHHh
Confidence            4578999999999999999996 9999999 5888 999999887754

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.60  E-value=0.00025  Score=53.30  Aligned_cols=49  Identities=20%  Similarity=0.479  Sum_probs=39.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC---------CCccccchhhc---ccccccccccchhccc
Q 024492           13 KKGPWTPEEDQILINYVKLYGH---------GNWRALPKQAG---LLRCGKSCRLRWINYL   61 (267)
Q Consensus        13 kkG~WT~EEDe~L~~~V~~~G~---------~nW~~IA~~l~---~~Rt~kqCr~Rw~n~L   61 (267)
                      +...||.+|-..|+.+......         .-|..||..|.   -.|++.||+.+|.+..
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            5689999999999999876421         15999998844   4599999999998865

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.57  E-value=0.0054  Score=58.06  Aligned_cols=106  Identities=17%  Similarity=0.234  Sum_probs=77.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccc----------------------------------------
Q 024492           15 GPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCR----------------------------------------   54 (267)
Q Consensus        15 G~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr----------------------------------------   54 (267)
                      +.||.-+=..++.++.+||-.+-..||..++++++...++                                        
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L  203 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL  203 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999988999999987224443332                                        


Q ss_pred             --------cchhcc---cCCC-CCCCCCCHHHHHHHHHHHHHcC----CcHHHHhhh------------CCCCCHHHHHH
Q 024492           55 --------LRWINY---LRPD-IKRGNFTREEEDTIINLHEMLG----NRWSAIAAR------------LPGRTDNEIKN  106 (267)
Q Consensus        55 --------~Rw~n~---L~p~-ikkg~WT~EED~~Li~lv~~~G----~kWs~IA~~------------lpgRT~~q~kn  106 (267)
                              .-|...   ..+. -+...||.+||..||-++.+||    +.|.+|-..            +..||+..|..
T Consensus       204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r  283 (374)
T 2y9y_A          204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR  283 (374)
T ss_dssp             HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred             HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence                    111110   0111 1345799999999999999999    679999433            35799999999


Q ss_pred             HHHHhhhHHHhhhh
Q 024492          107 VWHTHLKKRLKQKQ  120 (267)
Q Consensus       107 RW~~llrk~~~~~~  120 (267)
                      |-..|++-..+...
T Consensus       284 Rc~tLi~~IeKE~~  297 (374)
T 2y9y_A          284 RGNTLLQCLEKEFN  297 (374)
T ss_dssp             HHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999987554433

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=95.98  E-value=0.0028  Score=48.80  Aligned_cols=48  Identities=21%  Similarity=0.371  Sum_probs=41.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC--CCccccchhhcccccccccccchhc
Q 024492           11 GLKKGPWTPEEDQILINYVKLYGH--GNWRALPKQAGLLRCGKSCRLRWIN   59 (267)
Q Consensus        11 ~lkkG~WT~EEDe~L~~~V~~~G~--~nW~~IA~~l~~~Rt~kqCr~Rw~n   59 (267)
                      |-+---||.|||..++...++.|.  ..|..||+.++. |+..|+.+|++.
T Consensus        30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~N-ks~nqV~~RFq~   79 (95)
T 1ug2_A           30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFRE   79 (95)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHH
T ss_pred             CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHcc-CCHHHHHHHHHH
Confidence            334457999999999999999876  479999999987 999999999865

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=94.43  E-value=0.0025  Score=46.59  Aligned_cols=51  Identities=14%  Similarity=0.220  Sum_probs=42.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC--CCccccchhhcccccccccccchhcccC
Q 024492           10 MGLKKGPWTPEEDQILINYVKLYGH--GNWRALPKQAGLLRCGKSCRLRWINYLR   62 (267)
Q Consensus        10 ~~lkkG~WT~EEDe~L~~~V~~~G~--~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~   62 (267)
                      .|-.--.||.|||..|+..+++-|.  ..|..||+.+ + |++.|+..|++..+.
T Consensus        10 ~ge~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-n-ks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           10 KGEIIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-D-KNPNQVSERFQQLMK   62 (70)
Confidence            3444468999999999999999886  3799999999 4 999999999987553

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=94.53  E-value=0.027  Score=48.22  Aligned_cols=39  Identities=28%  Similarity=0.543  Sum_probs=32.8

Q ss_pred             ccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccch
Q 024492            4 APCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPK   42 (267)
Q Consensus         4 ~p~~~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~   42 (267)
                      -|++.++......||++||..|+..|.+||-++|..|-.
T Consensus       124 i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~  162 (211)
T 4b4c_A          124 IPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM  162 (211)
T ss_dssp             CCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence            356666666667899999999999999999999998854

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=94.43  E-value=0.016  Score=44.78  Aligned_cols=49  Identities=14%  Similarity=0.287  Sum_probs=40.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccchhhc----ccccccccccchhccc
Q 024492           12 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAG----LLRCGKSCRLRWINYL   61 (267)
Q Consensus        12 lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~----~~Rt~kqCr~Rw~n~L   61 (267)
                      ++...||.||...|..++++|.. .|..|+....    ..|+..+.++||....
T Consensus        28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            34578999999999999999997 9999998854    2388888888887754

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=94.36  E-value=0.066  Score=49.35  Aligned_cols=47  Identities=19%  Similarity=0.285  Sum_probs=41.7

Q ss_pred             CCCCCHHHHHHHHHHHHHcC-CcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 024492           67 RGNFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHLK  113 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~llr  113 (267)
                      -+.||..+...++.+..+|| +.|..||..|+|+|..+|+..+.....
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~  157 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE  157 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            35899999999999999999 589999999999999999877665554

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=93.93  E-value=0.2  Score=35.98  Aligned_cols=47  Identities=15%  Similarity=0.117  Sum_probs=40.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCc---HHHHhhhC--CCCCHHHHHHHHHHhh
Q 024492           66 KRGNFTREEEDTIINLHEMLGNR---WSAIAARL--PGRTDNEIKNVWHTHL  112 (267)
Q Consensus        66 kkg~WT~EED~~Li~lv~~~G~k---Ws~IA~~l--pgRT~~q~knRW~~ll  112 (267)
                      .+-.||+|..+..++++.++|..   +..|.+.|  +|.|..+|+.+...+.
T Consensus         6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR   57 (64)
T 1irz_A            6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            45679999999999999999954   88998876  7999999998877544

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=92.38  E-value=0.19  Score=42.77  Aligned_cols=49  Identities=18%  Similarity=0.281  Sum_probs=41.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHcC---CcHHHHhh--hCCCCCHHHHHHHHHHhhhH
Q 024492           66 KRGNFTREEEDTIINLHEMLG---NRWSAIAA--RLPGRTDNEIKNVWHTHLKK  114 (267)
Q Consensus        66 kkg~WT~EED~~Li~lv~~~G---~kWs~IA~--~lpgRT~~q~knRW~~llrk  114 (267)
                      ....||+.|-..|+.++.+||   .+|..|+.  .|.++|...|+..+..++..
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~   59 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG   59 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999   68999986  47899999999877766544

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=87.98  E-value=0.39  Score=43.51  Aligned_cols=29  Identities=38%  Similarity=0.712  Sum_probs=26.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccchh
Q 024492           15 GPWTPEEDQILINYVKLYGHGNWRALPKQ   43 (267)
Q Consensus        15 G~WT~EEDe~L~~~V~~~G~~nW~~IA~~   43 (267)
                      ..|+.+||..|+..|.+||.++|..|-.-
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D  197 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD  197 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence            56999999999999999999999999643

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=82.76  E-value=0.83  Score=32.72  Aligned_cols=48  Identities=10%  Similarity=0.046  Sum_probs=33.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCC--Cccccchhhcc-cccccccccchhc
Q 024492           12 LKKGPWTPEEDQILINYVKLYGHG--NWRALPKQAGL-LRCGKSCRLRWIN   59 (267)
Q Consensus        12 lkkG~WT~EEDe~L~~~V~~~G~~--nW~~IA~~l~~-~Rt~kqCr~Rw~n   59 (267)
                      ..+-.||+|..+..+.+|.++|..  .+..|.+.|+- +.+..++.-+.+.
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK   55 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK   55 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence            356799999999999999999942  15566666552 1455555554433

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=82.06  E-value=2.8  Score=37.82  Aligned_cols=47  Identities=13%  Similarity=0.218  Sum_probs=42.1

Q ss_pred             CCCCCHHHHHHHHHHHHHcC---CcHHHHhh--hCCCCCHHHHHHHHHHhhh
Q 024492           67 RGNFTREEEDTIINLHEMLG---NRWSAIAA--RLPGRTDNEIKNVWHTHLK  113 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~G---~kWs~IA~--~lpgRT~~q~knRW~~llr  113 (267)
                      +++||+.|-..|+..+.+||   .+|..|+.  .|+.++...++.-+..++.
T Consensus         3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~   54 (270)
T 2xb0_X            3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMME   54 (270)
T ss_dssp             TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence            68899999999999999999   68999975  6789999999998887774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	267
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-22
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-11
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-20
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-09
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	3e-18
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	5e-18
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	7e-14
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	2e-17
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	9e-17
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	3e-07
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	4e-14
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	8e-12
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	4e-14
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	3e-12
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	7e-13
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	5e-08
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	1e-12
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	8e-12
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	5e-09
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	1e-11
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	3e-11
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	1e-06
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	8e-04

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.2 bits (211), Expect = 2e-22
 Identities = 27/53 (50%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 12 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPD 64
          L KGPWT EEDQ LI  V+ YG   W  + K     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.1 bits (133), Expect = 3e-11
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 65  IKRGNFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHLK 113
           + +G +T+EE+  +I L +  G  RWS IA  L GR   + +  WH HL 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.6 bits (199), Expect = 1e-20
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 14 KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPD 64
          K  WT EED+ L   V+  G  +W+ +       R    C+ RW   L P+
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.9 bits (122), Expect = 1e-09
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 67  RGNFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHLK 113
           +  +TREE++ +  L E  G + W  IA  LP RTD + ++ W   L 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 75.1 bits (184), Expect = 3e-18
 Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 16 PWTPEEDQILINYVKLYGHGNWRALPKQA---GLLRCGKSCRLRWINYLR-----PDIKR 67
          P++  E + L+  V+  G G WR +  +A      R     + +W   +      P  +R
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 68 GNFTREEE-DTIINLHEMLGNR 88
          G    ++  D ++  H     +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.6 bits (183), Expect = 5e-18
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 14 KGPWTPEEDQILINYVKLYGHG-----NWRALPKQAGLLRCGKSCRLRWINYLRPDIKRG 68
          K  +T EED+ +++ V+           +  +         G S R R+  YL   ++  
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYV 59

Query: 69 NFTREEEDTIINLHEMLGN 87
              +    + +    L  
Sbjct: 60 YEVDKFGKLVRDDDGNLIK 78

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.4 bits (154), Expect = 7e-14
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 67  RGNFTREEEDTIINLHEMLGNR------WSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQ 120
           + +FT EE++ I+++      R      +  I+  +P  T N I++ +  +L KRL+   
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 121 QQE 123
           + +
Sbjct: 61  EVD 63

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (177), Expect = 2e-17
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 13 KKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLL-RCGKSCRLRWINYLR 62
          K+  W  EED+ L + V+ YG GNW  +        R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (172), Expect = 9e-17
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 13 KKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLL-RCGKSCRLRWINYLRPDI 65
          KK  WT EE + +   V+ YG GNW A+ K    + R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 3e-07
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 66  KRGNFTREEEDTIINLHEMLG-NRWSAIA--ARLPGRTDNEIKNVWHTHLKKRL 116
           K+  +T EE + +    +  G   W+AI+       RT   IK+ W T  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.9 bits (153), Expect = 4e-14
 Identities = 23/47 (48%), Positives = 33/47 (70%)

Query: 67  RGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLK 113
           + ++T EE+  I   H+ LGNRW+ IA  LPGRTDN IKN W++ ++
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.8 bits (137), Expect = 8e-12
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 14 KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLR 62
          K  WT EED+I+    K      W  + K     R   + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRL-GNRWAEIAKLLP-GRTDNAIKNHWNSTMR 47

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (154), Expect = 4e-14
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 2/62 (3%)

Query: 14 KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTRE 73
             WT EE ++    +  +G   W  + K  G  R     +     Y +  +K G     
Sbjct: 2  SVKWTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKCGLDKET 59

Query: 74 EE 75
            
Sbjct: 60 PN 61

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (141), Expect = 3e-12
 Identities = 13/55 (23%), Positives = 26/55 (47%)

Query: 70  FTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQQQEP 124
           +T EE++         G RW+ I+  +  RT  ++K+    + K ++K    +E 
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKET 59

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (145), Expect = 7e-13
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 8  EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLL--RCGKSCRLRW 57
          E+    + PWT  + ++L   ++ Y  G+     K A  +  +  + C  R+
Sbjct: 6  ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (110), Expect = 5e-08
 Identities = 6/52 (11%), Positives = 18/52 (34%), Gaps = 4/52 (7%)

Query: 62  RPDIKRGNFTREEEDTIINLHEMLG----NRWSAIAARLPGRTDNEIKNVWH 109
           R       +T+ ++  +    +       + W  IA  +P ++  +    + 
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYK 58

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (144), Expect = 1e-12
 Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 66  KRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQK 119
               ++ +E++T           +  IA+ L  +T  E    ++   KK    K
Sbjct: 16  VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT-KKNENYK 68

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (138), Expect = 8e-12
 Identities = 9/55 (16%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 66  KRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQ 120
               +T EE+   +      G  + AI+  +  ++  ++KN +  + ++R    +
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY-RRRFNIDE 57

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (118), Expect = 5e-09
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 13 KKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLR 62
              WT EE  + +  ++ YG  +++A+    G  +     +  ++NY R
Sbjct: 4  CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 51

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 1e-11
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 17 WTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY 60
          WT +E+  L+  V   G GNW+ +  Q    +  + C   ++ Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 55.7 bits (134), Expect = 3e-11
 Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 16 PWTPEEDQILINYVKLYGHGNWRALPKQAGLL--RCGKSCRLRWINYLRPDIKR 67
          PW+ +E++     + +Y           A  +  R  +  +  +   L  DIK 
Sbjct: 3  PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVEDIKY 55

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.4 bits (102), Expect = 1e-06
 Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 56  RWINYLRPDIKRGNFTREEEDTIINLHEMLGNR---WSAIAARLPGRTDNEIKNVWHTHL 112
                     K   +TRE +  I+ + +  G +   +S I+ +L  +T  E+ + +   +
Sbjct: 22  NNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81

Query: 113 K 113
           +
Sbjct: 82  Q 82

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.7 bits (82), Expect = 8e-04
 Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 8  EKMGLKKGPWTPEEDQILINYVKLYG--HGNWRALPKQAGLLRCGKSCRLRWINYLR 62
             G K   WT E D++++   +  G     +  + +Q G  +       R+   ++
Sbjct: 27 SSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELMQ 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	267
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.75
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.74
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.73
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.69
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.69
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.62
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.6
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.55
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.54
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.54
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.53
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.49
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.47
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.46
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.45
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.44
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.44
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.38
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.34
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.31
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.3
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.29
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.2
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.19
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.18
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.9
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.89
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.71
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.38
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.1
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.67
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.45
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.44
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.42
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.59
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.52
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	96.39
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	94.89
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.43
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	92.07
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	92.01
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	85.48

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=3.6e-21  Score=146.32  Aligned_cols=72  Identities=18%  Similarity=0.185  Sum_probs=66.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-----CccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcC
Q 024492           14 KGPWTPEEDQILINYVKLYGHG-----NWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLG   86 (267)
Q Consensus        14 kG~WT~EEDe~L~~~V~~~G~~-----nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G   86 (267)
                      |++||+|||++|+++|.+||..     +|..||+.|++ |+++|||.||.++|+|.++++.||.+||++|++++..+.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpg-Rt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~li   77 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNLI   77 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCBC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCC-CCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhccc
Confidence            6899999999999999999974     49999999998 999999999999999999999999999999988776554

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=2.4e-19  Score=124.00  Aligned_cols=52  Identities=52%  Similarity=0.938  Sum_probs=50.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCC
Q 024492           12 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPD   64 (267)
Q Consensus        12 lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~   64 (267)
                      |+||+||+|||++|+.+|++||.++|..||+.|++ |++.||+.||.++|+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCC-CCHHHHHHHHHhhCCCC
Confidence            57999999999999999999998899999999998 99999999999999995

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=2.1e-18  Score=116.97  Aligned_cols=47  Identities=49%  Similarity=0.918  Sum_probs=45.3

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 024492           67 RGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLK  113 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llr  113 (267)
                      |++||+|||++|+++|++||++|+.||++|||||+++|||||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999875

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=1.3e-17  Score=115.15  Aligned_cols=50  Identities=38%  Similarity=0.811  Sum_probs=47.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcC-CcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492           65 IKRGNFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHLKK  114 (267)
Q Consensus        65 ikkg~WT~EED~~Li~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~llrk  114 (267)
                      +.||+||+|||++|+++|++|| ++|..||+.|+|||+.||++||.++|++
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            5799999999999999999999 6899999999999999999999998875

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=2.8e-18  Score=117.51  Aligned_cols=50  Identities=32%  Similarity=0.667  Sum_probs=48.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCC
Q 024492           14 KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPD   64 (267)
Q Consensus        14 kG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~   64 (267)
                      |++||+|||++|+.+|++||.++|..||+.|++ |++.||+.||.++|+|+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCC-CCHHHHHHHHHhhCCCC
Confidence            689999999999999999998899999999998 99999999999999995

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2.4e-16  Score=107.74  Aligned_cols=48  Identities=35%  Similarity=0.670  Sum_probs=45.5

Q ss_pred             CCCCCHHHHHHHHHHHHHcC-CcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492           67 RGNFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHLKK  114 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~llrk  114 (267)
                      |+.||.|||++|+++|.+|| ++|.+||.+|+|||+.||++||.++|.+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 6899999999999999999999999865

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.60  E-value=9.8e-17  Score=120.53  Aligned_cols=74  Identities=22%  Similarity=0.432  Sum_probs=60.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccchhh---cccccccccccchhccc-----CCCCCCCCCCHHHHHHHHHHHHHcC
Q 024492           15 GPWTPEEDQILINYVKLYGHGNWRALPKQA---GLLRCGKSCRLRWINYL-----RPDIKRGNFTREEEDTIINLHEMLG   86 (267)
Q Consensus        15 G~WT~EEDe~L~~~V~~~G~~nW~~IA~~l---~~~Rt~kqCr~Rw~n~L-----~p~ikkg~WT~EED~~Li~lv~~~G   86 (267)
                      .+||+|||++|+.+|.+||.++|..|++.+   ..+|++.||++||.|+|     .|..+++.|+++|   |+..|..++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            489999999999999999999999999863   23499999999999998     4778899999876   455555555


Q ss_pred             CcHHH
Q 024492           87 NRWSA   91 (267)
Q Consensus        87 ~kWs~   91 (267)
                      .+|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            57764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.6e-16  Score=107.87  Aligned_cols=54  Identities=33%  Similarity=0.547  Sum_probs=48.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCccccchhhc-ccccccccccchhcccCCCCC
Q 024492           13 KKGPWTPEEDQILINYVKLYGHGNWRALPKQAG-LLRCGKSCRLRWINYLRPDIK   66 (267)
Q Consensus        13 kkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~-~~Rt~kqCr~Rw~n~L~p~ik   66 (267)
                      ++++||+|||++|+.+|++||.++|..|++.++ .+|++.||++||+++++|.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            578999999999999999999989999998743 239999999999999998864

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=1.5e-15  Score=114.84  Aligned_cols=55  Identities=27%  Similarity=0.473  Sum_probs=50.8

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCc------HHHHhhhCCCCCHHHHHHHHHHhhhHHHhhhhc
Q 024492           67 RGNFTREEEDTIINLHEMLGNR------WSAIAARLPGRTDNEIKNVWHTHLKKRLKQKQQ  121 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~G~k------Ws~IA~~lpgRT~~q~knRW~~llrk~~~~~~~  121 (267)
                      |+.||+|||++|+++|.+||.+      |.+||++|||||++|||+||+++|.+.+++...
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~   61 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYE   61 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEEC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCC
Confidence            6899999999999999999975      999999999999999999999999999876543

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.5e-15  Score=102.14  Aligned_cols=48  Identities=29%  Similarity=0.448  Sum_probs=43.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCC-cHHHHhhhC--CCCCHHHHHHHHHHhhh
Q 024492           66 KRGNFTREEEDTIINLHEMLGN-RWSAIAARL--PGRTDNEIKNVWHTHLK  113 (267)
Q Consensus        66 kkg~WT~EED~~Li~lv~~~G~-kWs~IA~~l--pgRT~~q~knRW~~llr  113 (267)
                      ++++||+|||++|+++|.+||. +|+.||+.+  .|||+.||++||+++.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            5789999999999999999994 899999875  49999999999998764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.8e-15  Score=103.59  Aligned_cols=51  Identities=27%  Similarity=0.446  Sum_probs=46.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHcC-CcHHHHhhh--CCCCCHHHHHHHHHHhhhHHH
Q 024492           66 KRGNFTREEEDTIINLHEMLG-NRWSAIAAR--LPGRTDNEIKNVWHTHLKKRL  116 (267)
Q Consensus        66 kkg~WT~EED~~Li~lv~~~G-~kWs~IA~~--lpgRT~~q~knRW~~llrk~~  116 (267)
                      ++++||.|||++|+++|++|| ++|..||+.  |++||+.||++||++++++.+
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~   54 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   54 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCC
Confidence            478999999999999999999 589999997  569999999999999988754

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.5e-14  Score=103.07  Aligned_cols=53  Identities=23%  Similarity=0.311  Sum_probs=48.7

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhHHHhhh
Q 024492           67 RGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQK  119 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk~~~~~  119 (267)
                      ...||.|||++|++++.+||.+|..||++|||||+.||++||..++++..+..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~   54 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCG   54 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSC
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcC
Confidence            35799999999999999999999999999999999999999999998866544

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.7e-15  Score=102.05  Aligned_cols=50  Identities=30%  Similarity=0.477  Sum_probs=44.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCccccchhhc-ccccccccccchhcccC
Q 024492           13 KKGPWTPEEDQILINYVKLYGHGNWRALPKQAG-LLRCGKSCRLRWINYLR   62 (267)
Q Consensus        13 kkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~-~~Rt~kqCr~Rw~n~L~   62 (267)
                      ++++||+|||++|+++|.+||.++|..|++.++ .+|++.||++||.++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            589999999999999999999999999998754 23999999999998753

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=7.3e-15  Score=99.18  Aligned_cols=47  Identities=30%  Similarity=0.555  Sum_probs=44.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccC
Q 024492           14 KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLR   62 (267)
Q Consensus        14 kG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~   62 (267)
                      |++||+|||++|+.+|++||. +|..||+.+|+ |++.||+.||+++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~g-Rt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPG-RTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTT-CCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcCC-CCHHHHHHHHHHHcC
Confidence            689999999999999999997 89999999998 999999999999874

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.2e-15  Score=98.85  Aligned_cols=45  Identities=27%  Similarity=0.671  Sum_probs=42.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhccc
Q 024492           16 PWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYL   61 (267)
Q Consensus        16 ~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L   61 (267)
                      .||+|||++|+++|++||.++|..||+.+++ |++.||+.||.++.
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~-Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCC-CCHHHHHHHHHHhC
Confidence            5999999999999999999999999999998 99999999999863

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=7.9e-14  Score=98.17  Aligned_cols=51  Identities=12%  Similarity=0.216  Sum_probs=46.3

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHcCC----cHHHHhhhCCCCCHHHHHHHHHHh
Q 024492           61 LRPDIKRGNFTREEEDTIINLHEMLGN----RWSAIAARLPGRTDNEIKNVWHTH  111 (267)
Q Consensus        61 L~p~ikkg~WT~EED~~Li~lv~~~G~----kWs~IA~~lpgRT~~q~knRW~~l  111 (267)
                      ..+...+++||+|||++|++++.+||.    +|.+||++|||||..||++||+.|
T Consensus         6 ~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           6 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             ccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            356677899999999999999999994    699999999999999999999864

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.8e-14  Score=95.00  Aligned_cols=43  Identities=19%  Similarity=0.359  Sum_probs=41.0

Q ss_pred             CCCHHHHHHHHHHHHHcC-CcHHHHhhhCCCCCHHHHHHHHHHh
Q 024492           69 NFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTH  111 (267)
Q Consensus        69 ~WT~EED~~Li~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~l  111 (267)
                      .||.|||++|+++|.+|| ++|..||++|+|||+.||++||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 6799999999999999999999875

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=3.6e-13  Score=103.01  Aligned_cols=70  Identities=16%  Similarity=0.171  Sum_probs=63.0

Q ss_pred             hcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCCc---HHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492           44 AGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNR---WSAIAARLPGRTDNEIKNVWHTHLKK  114 (267)
Q Consensus        44 l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~k---Ws~IA~~lpgRT~~q~knRW~~llrk  114 (267)
                      +|. .+..++..++.+..++......||.|||++|++.++++|.+   |..||+.|+|||++||++||..+++-
T Consensus        11 ~p~-~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~l   83 (95)
T d1ug2a_          11 LPK-ASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL   83 (95)
T ss_dssp             CCC-CCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             CCC-CCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            444 66777888888888888889999999999999999999988   99999999999999999999988765

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.34  E-value=9.1e-13  Score=93.53  Aligned_cols=47  Identities=19%  Similarity=0.433  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCC----cHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492           68 GNFTREEEDTIINLHEMLGN----RWSAIAARLPGRTDNEIKNVWHTHLKK  114 (267)
Q Consensus        68 g~WT~EED~~Li~lv~~~G~----kWs~IA~~lpgRT~~q~knRW~~llrk  114 (267)
                      .+||.|||++|++++++||.    +|.+||.+|||||.+||++||+.+++.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~d   52 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED   52 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            47999999999999999994    599999999999999999999766543

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.4e-13  Score=94.88  Aligned_cols=51  Identities=20%  Similarity=0.472  Sum_probs=46.6

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCC---Cccccchhhcccccccccccchhc
Q 024492            8 EKMGLKKGPWTPEEDQILINYVKLYGHG---NWRALPKQAGLLRCGKSCRLRWIN   59 (267)
Q Consensus         8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~~---nW~~IA~~l~~~Rt~kqCr~Rw~n   59 (267)
                      +++..++++||+|||++|+.+|..||.+   +|..||+.||+ |+++||+.||..
T Consensus         6 ~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~-Rt~~qc~~R~~~   59 (60)
T d2cqra1           6 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKL   59 (60)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHH
T ss_pred             ccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCC-CCHHHHHHHHHH
Confidence            4677889999999999999999999975   59999999998 999999999964

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.1e-13  Score=98.62  Aligned_cols=58  Identities=21%  Similarity=0.350  Sum_probs=52.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHH
Q 024492           14 KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTRE   73 (267)
Q Consensus        14 kG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~E   73 (267)
                      ..+||+|||++|+.+|..||. +|..||+.||+ |+..||+.||.+++++..+.+.+...
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~-Rt~~q~k~ry~~~~~~~~k~~~~~~~   59 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKCGLDKET   59 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCSCTTCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhcc-hHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            468999999999999999995 99999999998 99999999999999888777766543

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.29  E-value=2e-12  Score=96.55  Aligned_cols=50  Identities=26%  Similarity=0.492  Sum_probs=45.2

Q ss_pred             CCCHHHHHHHHHHHHHcC-CcHHHHhhh----CCCCCHHHHHHHHHHhhhHHHhh
Q 024492           69 NFTREEEDTIINLHEMLG-NRWSAIAAR----LPGRTDNEIKNVWHTHLKKRLKQ  118 (267)
Q Consensus        69 ~WT~EED~~Li~lv~~~G-~kWs~IA~~----lpgRT~~q~knRW~~llrk~~~~  118 (267)
                      +||.|||++|+++|.+|| ++|..|++.    ++|||+.||++||+++|+.....
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~   56 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA   56 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccC
Confidence            799999999999999999 589999985    68999999999999999876543

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.20  E-value=4.7e-13  Score=95.04  Aligned_cols=44  Identities=14%  Similarity=0.430  Sum_probs=40.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---ccccchhhcccccccccccchhc
Q 024492           15 GPWTPEEDQILINYVKLYGHGN---WRALPKQAGLLRCGKSCRLRWIN   59 (267)
Q Consensus        15 G~WT~EEDe~L~~~V~~~G~~n---W~~IA~~l~~~Rt~kqCr~Rw~n   59 (267)
                      .+||+|||++|..+|..||.++   |..||..+++ |++.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~g-Rt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCC-CCHHHHHHHHHH
Confidence            5899999999999999999764   9999999998 999999999943

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=8.3e-12  Score=88.78  Aligned_cols=48  Identities=17%  Similarity=0.283  Sum_probs=44.5

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492           67 RGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKK  114 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk  114 (267)
                      ...||+||+.+|++++.+||.+|..||.+|||||..+|+++|..+.++
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            357999999999999999999999999999999999999999987653

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=5.9e-12  Score=90.41  Aligned_cols=47  Identities=15%  Similarity=0.077  Sum_probs=43.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHh
Q 024492           65 IKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH  111 (267)
Q Consensus        65 ikkg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~l  111 (267)
                      ....+||.||+++|++++.+||.+|..||.+|||||..||+++|...
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence            34568999999999999999999999999999999999999999854

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2e-10  Score=81.46  Aligned_cols=47  Identities=23%  Similarity=0.537  Sum_probs=43.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccC
Q 024492           14 KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLR   62 (267)
Q Consensus        14 kG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~   62 (267)
                      ..+||++||++|..++..||. +|..||+++|+ |+..||+.+|.++.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~~-kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGR-DFQAISDVIGN-KSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCc-hHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence            467999999999999999995 99999999998 999999999998764

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.8e-10  Score=82.39  Aligned_cols=51  Identities=12%  Similarity=0.102  Sum_probs=44.9

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhccc
Q 024492            9 KMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYL   61 (267)
Q Consensus         9 K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L   61 (267)
                      +......+||+|||++|..++.+||. +|..||+.+|+ |+..||+.+|....
T Consensus        12 ~~~~~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~~-rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          12 KDRQVMNMWSEQEKETFREKFMQHPK-NFGLIASFLER-KTVAECVLYYYLTK   62 (68)
T ss_dssp             TSTTTTTCCCTTTHHHHHHHHHHTTS-CSSSHHHHTTT-SCHHHHHHHHHHHT
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHCC-cHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence            33445588999999999999999995 99999999998 99999999997654

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=1.8e-09  Score=82.19  Aligned_cols=51  Identities=20%  Similarity=0.340  Sum_probs=45.6

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCC--ccccchhhcccccccccccchhcc
Q 024492            9 KMGLKKGPWTPEEDQILINYVKLYGHGN--WRALPKQAGLLRCGKSCRLRWINY   60 (267)
Q Consensus         9 K~~lkkG~WT~EEDe~L~~~V~~~G~~n--W~~IA~~l~~~Rt~kqCr~Rw~n~   60 (267)
                      +.|.+...||.|||+.|+..++++|...  |..||+.|++ |++.||+.||...
T Consensus        28 s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~-Rs~~qvr~Rf~~L   80 (95)
T d1ug2a_          28 STGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHHH
T ss_pred             CCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence            4667788999999999999999999743  9999999998 9999999999663

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2e-07  Score=64.98  Aligned_cols=44  Identities=20%  Similarity=0.329  Sum_probs=40.3

Q ss_pred             CCCCHHHHHHHHHHHHHcC----CcHHHHhhhCCCCCHHHHHHHHHHhh
Q 024492           68 GNFTREEEDTIINLHEMLG----NRWSAIAARLPGRTDNEIKNVWHTHL  112 (267)
Q Consensus        68 g~WT~EED~~Li~lv~~~G----~kWs~IA~~lpgRT~~q~knRW~~ll  112 (267)
                      +.||.||+.+|.+++.+|+    .+|.+||..| |||..+|..|++.+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            5799999999999999997    6799999999 999999999998643

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=2.9e-06  Score=58.26  Aligned_cols=43  Identities=16%  Similarity=0.218  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCcHHHHhhh-CCCCCHHHHHHHHHH
Q 024492           68 GNFTREEEDTIINLHEMLGNRWSAIAAR-LPGRTDNEIKNVWHT  110 (267)
Q Consensus        68 g~WT~EED~~Li~lv~~~G~kWs~IA~~-lpgRT~~q~knRW~~  110 (267)
                      ..||+||-.+..+++.+||.+|.+|++. +|+||..+|.+.|..
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3699999999999999999999999985 699999999999874

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=4.8e-06  Score=57.77  Aligned_cols=45  Identities=16%  Similarity=0.250  Sum_probs=39.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CCccccchhhcccccccccccchhccc
Q 024492           15 GPWTPEEDQILINYVKLYGH---GNWRALPKQAGLLRCGKSCRLRWINYL   61 (267)
Q Consensus        15 G~WT~EEDe~L~~~V~~~G~---~nW~~IA~~l~~~Rt~kqCr~Rw~n~L   61 (267)
                      +.||++|+.+|.+++.+|..   ..|..||..+ + |+..+|..||...-
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-g-kt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-G-RSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-T-SCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-C-CCHHHHHHHHHHHH
Confidence            57999999999999999964   3699999999 4 99999999987543

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.45  E-value=2.1e-05  Score=53.82  Aligned_cols=43  Identities=12%  Similarity=0.295  Sum_probs=38.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccchh-hcccccccccccchhcc
Q 024492           16 PWTPEEDQILINYVKLYGHGNWRALPKQ-AGLLRCGKSCRLRWINY   60 (267)
Q Consensus        16 ~WT~EEDe~L~~~V~~~G~~nW~~IA~~-l~~~Rt~kqCr~Rw~n~   60 (267)
                      .||+||-.++.+++..||. +|..|++. +|+ |+..||...|...
T Consensus         3 ~WT~eE~~~F~~~~~~yGK-df~~I~~~~v~~-Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK-DFNDIRQDFLPW-KSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSS-SCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc-cHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence            6999999999999999996 99999986 566 9999999987654

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=0.00019  Score=46.70  Aligned_cols=46  Identities=26%  Similarity=0.560  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCcHHHHhhhC---CCCCHHHHHHHHHHhh
Q 024492           67 RGNFTREEEDTIINLHEMLGNRWSAIAARL---PGRTDNEIKNVWHTHL  112 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~G~kWs~IA~~l---pgRT~~q~knRW~~ll  112 (267)
                      +..||+||-.-|+..|+.+|+.|..|-=.+   |||+..++..+|+.++
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            357999999999999999999999996443   8999999999998753

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00013  Score=50.37  Aligned_cols=47  Identities=23%  Similarity=0.413  Sum_probs=40.8

Q ss_pred             CCCCCHHHHHHHHHHHHHcC--------Cc-HHHHhh-hCCCCCHHHHHHHHHHhhh
Q 024492           67 RGNFTREEEDTIINLHEMLG--------NR-WSAIAA-RLPGRTDNEIKNVWHTHLK  113 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~G--------~k-Ws~IA~-~lpgRT~~q~knRW~~llr  113 (267)
                      +.+||.|||+.|++.|+++.        |. |...++ .+|.+|-.+.|+||...|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            45899999999999999874        22 999995 6899999999999998775

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.59  E-value=0.0026  Score=44.20  Aligned_cols=46  Identities=15%  Similarity=0.141  Sum_probs=38.7

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCcH---HHHhhh--CCCCCHHHHHHHHHHhh
Q 024492           67 RGNFTREEEDTIINLHEMLGNRW---SAIAAR--LPGRTDNEIKNVWHTHL  112 (267)
Q Consensus        67 kg~WT~EED~~Li~lv~~~G~kW---s~IA~~--lpgRT~~q~knRW~~ll  112 (267)
                      +-.||+||.++.++++..||..|   ..|...  ++|+|..+|+.+...+.
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            45699999999999999999877   577765  59999999998776553

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00031  Score=48.33  Aligned_cols=48  Identities=25%  Similarity=0.427  Sum_probs=39.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC--------Cccccch-hhcccccccccccchhcccC
Q 024492           14 KGPWTPEEDQILINYVKLYGHG--------NWRALPK-QAGLLRCGKSCRLRWINYLR   62 (267)
Q Consensus        14 kG~WT~EEDe~L~~~V~~~G~~--------nW~~IA~-~l~~~Rt~kqCr~Rw~n~L~   62 (267)
                      +-+||.|||+.|+.+|..+...        =|..+++ .++. ++-.+-|+||.++|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~-HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCC-CCHHHHHHHHHHHhc
Confidence            5689999999999999998432        3888885 4555 888889999998874

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0033  Score=44.26  Aligned_cols=50  Identities=16%  Similarity=0.302  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCc----HHHHhhhCCCCCHHHHHHHHHHhhhHH
Q 024492           66 KRGNFTREEEDTIINLHEMLGNR----WSAIAARLPGRTDNEIKNVWHTHLKKR  115 (267)
Q Consensus        66 kkg~WT~EED~~Li~lv~~~G~k----Ws~IA~~lpgRT~~q~knRW~~llrk~  115 (267)
                      ..+.|+++|-++|-.++..+...    |..+|..+..||..+|..+|...++.+
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~~   60 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK   60 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcccc
Confidence            45689999999999999999844    999999999999999999888765543

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.89  E-value=0.008  Score=41.61  Aligned_cols=47  Identities=11%  Similarity=0.111  Sum_probs=34.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCc--cccchhh--cccccccccccchhcc
Q 024492           13 KKGPWTPEEDQILINYVKLYGHGNW--RALPKQA--GLLRCGKSCRLRWINY   60 (267)
Q Consensus        13 kkG~WT~EEDe~L~~~V~~~G~~nW--~~IA~~l--~~~Rt~kqCr~Rw~n~   60 (267)
                      .+-.||+||.++++.+|..+|...|  ..|...+  ++ ++..||+-+.+.|
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~-lT~~qV~SHlQKY   56 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDK-LTRENVASHLQKF   56 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTT-CCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCC-CCHHHHHHHHHHH
Confidence            3568999999999999999997444  3555554  33 6778887765554

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.43  E-value=0.013  Score=41.19  Aligned_cols=50  Identities=20%  Similarity=0.377  Sum_probs=43.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhC---CCCccccchhhcccccccccccchhcccCCC
Q 024492           14 KGPWTPEEDQILINYVKLYG---HGNWRALPKQAGLLRCGKSCRLRWINYLRPD   64 (267)
Q Consensus        14 kG~WT~EEDe~L~~~V~~~G---~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~   64 (267)
                      -+.|+++|=++|-.++.-..   .+.|..||..+|. |++..|...|...+.-.
T Consensus         8 d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGt-RSaeECQ~ky~~~~~~~   60 (73)
T d1wgxa_           8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPRGK   60 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSSSS
T ss_pred             ccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHcc-CCHHHHHHHHHhCcccc
Confidence            47999999999999998764   4579999999999 99999999998876543

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.07  E-value=0.11  Score=40.17  Aligned_cols=55  Identities=20%  Similarity=0.333  Sum_probs=44.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcC-Cc---HHHHhhh------------CCCCCHHHHHHHHHHhhhHHHhh
Q 024492           64 DIKRGNFTREEEDTIINLHEMLG-NR---WSAIAAR------------LPGRTDNEIKNVWHTHLKKRLKQ  118 (267)
Q Consensus        64 ~ikkg~WT~EED~~Li~lv~~~G-~k---Ws~IA~~------------lpgRT~~q~knRW~~llrk~~~~  118 (267)
                      ..++..+|.|||.-|+-.+.+|| .+   |.+|-..            +..||+..|..|-.++++-..+.
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~kE  116 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIERE  116 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHHHH
Confidence            44555799999999999999999 55   9888432            24799999999999999875544

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.01  E-value=0.23  Score=32.62  Aligned_cols=42  Identities=21%  Similarity=0.349  Sum_probs=37.6

Q ss_pred             CCCHHHHHHHHHHHHHcC-CcHHHHhhhCCCCCHHHHHHHHHH
Q 024492           69 NFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHT  110 (267)
Q Consensus        69 ~WT~EED~~Li~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~  110 (267)
                      .|++-|=..++.+..+|| ..-..||..|.|+|..+|+.....
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~v   43 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAV   43 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHH
Confidence            499999999999999999 689999999999999999875543

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.48  E-value=0.19  Score=32.07  Aligned_cols=45  Identities=20%  Similarity=0.270  Sum_probs=34.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccchhhcc--cccccccccchhc
Q 024492           14 KGPWTPEEDQILINYVKLYGHGNWRALPKQAGL--LRCGKSCRLRWIN   59 (267)
Q Consensus        14 kG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~--~Rt~kqCr~Rw~n   59 (267)
                      +..||.||-.-|...|+++|. .|+.|-=..|-  +|+......+|+.
T Consensus         1 Rknft~eEv~YL~~GVK~~G~-~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcc-hhhhhhhccCCCCCchhhHHHHHHHh
Confidence            357999999999999999997 99998755432  3777666666543